Citrus Sinensis ID: 012368
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | 2.2.26 [Sep-21-2011] | |||||||
| O04866 | 451 | Acetylornithine aminotran | N/A | no | 0.916 | 0.944 | 0.748 | 0.0 | |
| Q9M8M7 | 457 | Acetylornithine aminotran | yes | no | 0.963 | 0.980 | 0.675 | 0.0 | |
| Q55DT8 | 453 | Probable acetylornithine | yes | no | 0.864 | 0.887 | 0.455 | 1e-101 | |
| Q58131 | 398 | Acetylornithine aminotran | yes | no | 0.823 | 0.962 | 0.463 | 2e-99 | |
| Q9X2A5 | 385 | Acetylornithine aminotran | yes | no | 0.812 | 0.981 | 0.478 | 5e-98 | |
| Q8R7C1 | 393 | Acetylornithine aminotran | yes | no | 0.823 | 0.974 | 0.453 | 3e-94 | |
| Q97GH9 | 387 | Acetylornithine aminotran | yes | no | 0.815 | 0.979 | 0.451 | 9e-93 | |
| O30156 | 375 | Acetylornithine aminotran | yes | no | 0.793 | 0.984 | 0.447 | 2e-92 | |
| Q6C846 | 411 | Acetylornithine aminotran | yes | no | 0.836 | 0.946 | 0.438 | 7e-92 | |
| O27392 | 390 | Acetylornithine aminotran | yes | no | 0.819 | 0.976 | 0.444 | 3e-91 |
| >sp|O04866|ARGD_ALNGL Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1 | Back alignment and function desciption |
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Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/429 (74%), Positives = 365/429 (85%), Gaps = 3/429 (0%)
Query: 35 RPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYD 94
R + +A NVEV + G+ +KEVMEA ++LVGTY R PVVL+ GKGCKLYD
Sbjct: 25 RHLQVSACANVEVQAPSSVKKQGV---SKEVMEAAGRVLVGTYARVPVVLSRGKGCKLYD 81
Query: 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF 154
EGREYLDLS+GIAVN LGH D+DW++AV +QA LTHVSN++YSIPQ+ELAKRLVA SF
Sbjct: 82 PEGREYLDLSAGIAVNVLGHADSDWLRAVTEQAATLTHVSNVFYSIPQVELAKRLVASSF 141
Query: 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
ADRVFFSN+GTEANEAAIKFARKFQR + PD K+PATEFVSF+NSFHGRTMG+LALTSKE
Sbjct: 142 ADRVFFSNSGTEANEAAIKFARKFQRFTRPDEKQPATEFVSFSNSFHGRTMGSLALTSKE 201
Query: 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274
+YRSPFEPVMPGV F+EYGNIEA +LIQ K AAVFVEPIQGEGG+YSATKEFL LR
Sbjct: 202 NYRSPFEPVMPGVTFLEYGNIEAATQLIQRRKIAAVFVEPIQGEGGVYSATKEFLYALRK 261
Query: 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVAS 334
ACDD+G LLVFDEVQCGLGRTGYLWAHE Y +FPDIMTLAKPLAGGLPIGA LVTE+VAS
Sbjct: 262 ACDDSGTLLVFDEVQCGLGRTGYLWAHEIYDVFPDIMTLAKPLAGGLPIGAVLVTERVAS 321
Query: 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394
AI YGDHG+TFAG PLVC AA+ VLDKI P FLASVSKKGHYFKE L KL N HV++
Sbjct: 322 AITYGDHGTTFAGGPLVCKAALTVLDKILRPGFLASVSKKGHYFKEMLINKLGGNSHVRE 381
Query: 395 VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454
VRG+GLI+GIE DVSA+P+V+AC +SGLLVLTAGKGNVVR+VPPLII+EQEL++A EIL
Sbjct: 382 VRGVGLIVGIELDVSASPLVNACLNSGLLVLTAGKGNVVRIVPPLIITEQELEKAAEILL 441
Query: 455 KTLPVLDSN 463
+ LP LD +
Sbjct: 442 QCLPALDRH 450
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Involved in the biosynthesis of citrulline. Alnus glutinosa (taxid: 3517) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 1 |
| >sp|Q9M8M7|ARGD_ARATH Acetylornithine aminotransferase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=WIN1 PE=1 SV=1 | Back alignment and function description |
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Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/466 (67%), Positives = 379/466 (81%), Gaps = 18/466 (3%)
Query: 5 MSSTFQAPL-QVPLSQSGNLRRQIKFNGVKRRPMVAA--------ASVNVEVNDAARGSA 55
M+S Q L + P S+ G LRR+++ RP++ ASV D A
Sbjct: 1 MASLSQITLPRAPSSEIGLLRRRLE------RPIIRTRIGFNGRIASVLTNAGDQAVSVK 54
Query: 56 GGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG 115
+ +++V+E E K++VGTY RAPVVL+SGKGCKL+D EG+EYLD +SGIAVNALGHG
Sbjct: 55 ASV---SQKVIEEEAKVIVGTYARAPVVLSSGKGCKLFDPEGKEYLDCASGIAVNALGHG 111
Query: 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175
D DW++AV +QA VL HVSN+YY+IPQIELAKRLVA SFADRVFF N+GTEANEAAIKF+
Sbjct: 112 DPDWLRAVTEQAGVLAHVSNVYYTIPQIELAKRLVASSFADRVFFCNSGTEANEAAIKFS 171
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235
RKFQR ++P+ KE AT F++FTNSFHGRT+GALALTSKE YR+PFEP+MPGV F+EYGNI
Sbjct: 172 RKFQRFTHPEDKEVATGFIAFTNSFHGRTLGALALTSKEQYRTPFEPIMPGVTFLEYGNI 231
Query: 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
+A LI+ GK AAVFVEPIQGEGGIYSATKEFLQ LR ACD AG+LLVFDEVQCGLGRT
Sbjct: 232 QAATDLIRSGKIAAVFVEPIQGEGGIYSATKEFLQSLRSACDAAGSLLVFDEVQCGLGRT 291
Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAA 355
G +WA+E +G+ PDIMT+AKPLAGGLPIGA LVTEKVA INYGDHGSTFAGSPLVC+AA
Sbjct: 292 GLMWAYEAFGVTPDIMTVAKPLAGGLPIGAVLVTEKVAETINYGDHGSTFAGSPLVCSAA 351
Query: 356 IAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVD 415
IAV+DK+S P+FL+SVS KG YF++ L +KL N HVK+VRG GLIIG+E DV A+ +VD
Sbjct: 352 IAVMDKVSKPSFLSSVSNKGRYFRDLLVKKLGGNSHVKEVRGEGLIIGVELDVPASSLVD 411
Query: 416 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461
ACRDSGLL+LTAGKGNVVR+VPPL+ISE+E+++AVEI+ + L LD
Sbjct: 412 ACRDSGLLILTAGKGNVVRIVPPLVISEEEIERAVEIMSQNLTALD 457
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Involved in the biosynthesis of citrulline (By similarity). Essential gene that modulates defense response to pathogenic bacteria, conferring susceptibility and repressing salicylic acid (SA) accumulation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q55DT8|ARGD_DICDI Probable acetylornithine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=argD PE=3 SV=1 | Back alignment and function description |
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Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/417 (45%), Positives = 275/417 (65%), Gaps = 15/417 (3%)
Query: 58 LGRNNKE----VMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNAL 112
L R+NK+ ++ +++ TY R + +V GK LYD +G +YLD +GIAVNAL
Sbjct: 39 LDRDNKDGTSDYIKLHDNVIMNTYGRVSDIVFTHGKDSWLYDMKGDKYLDFGAGIAVNAL 98
Query: 113 GHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAA 171
GH + W + V +Q+ LTH+SN+YY+ P IELA+ ++A + D+VFF+N+GTEANEAA
Sbjct: 99 GHSNDGWSEVVANQSKKLTHLSNLYYNQPAIELAQSMIASTPIFDKVFFANSGTEANEAA 158
Query: 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231
+KFA+K K E ++F++ F GR+MG+L+ T K YR + P++PGV+F E
Sbjct: 159 LKFAKKIGIAKGGVDKH---EIIAFSHGFSGRSMGSLSCTHKSKYREIYGPLVPGVHFAE 215
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
Y +IE+ +KL+ KT AV +EP+QGEGG+ +AT EF+Q L C + LL+ DEVQCG
Sbjct: 216 YNDIESVKKLMSKSKTCAVIIEPVQGEGGLEAATVEFMQQLYKLCKENDCLLIVDEVQCG 275
Query: 292 LGRTGYLWAHEHYGI---FPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGS 348
+GRTG LWAH + PDIMTLAKPLAGGLPIGA LV++KVAS I GDHG+TF G
Sbjct: 276 IGRTGQLWAHTRFDTEKCKPDIMTLAKPLAGGLPIGAVLVSDKVASEIKPGDHGTTFGGG 335
Query: 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGL-GLIIGIEF 406
PLVC V ++IS P+FL V +KG Y + LK+ + P+ + ++R + GL +GI+
Sbjct: 336 PLVCEVGKYVFERISQPSFLKEVQEKGKYLTDGLKKLKDQFPNSILEIRTVGGLFVGIQL 395
Query: 407 DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463
D + + +V + +L++ AG +V+R PPL I++QE+DQ + +L L ++SN
Sbjct: 396 DHNVSDLVSYAKSQKILIINAGD-DVIRFCPPLTITKQEIDQLLLVLKNYLIKVNSN 451
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Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q58131|ARGD_METJA Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=argD PE=3 SV=1 | Back alignment and function description |
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Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/388 (46%), Positives = 257/388 (66%), Gaps = 5/388 (1%)
Query: 66 MEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD 125
++ EKK + Y R PVVL GKG ++YD +G++YLD +GI VN +GH ++A+
Sbjct: 7 IDLEKKYHLQIYGRLPVVLVEGKGMEVYDIDGKKYLDFLAGIGVNNVGHCHPKVVEAIKK 66
Query: 126 QANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPD 185
QA L H SN+YY+IPQI+LAK+LV S DR FF N+G EANE AIKFARK+ S
Sbjct: 67 QAETLIHTSNIYYTIPQIKLAKKLVELSGLDRAFFCNSGAEANEGAIKFARKYV--SKVL 124
Query: 186 SKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245
+E E +S N+FHGRT+ LA T K Y+ F P+ PG +V + +IEA ++ I
Sbjct: 125 GRE-GGEIISMYNAFHGRTLTTLAATPKPKYQDGFYPLPPGFKYVPFNDIEALKEAITD- 182
Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
KTAA+ +EP+QGEGGI+ A K++L+ +RD CDD +L+FDEVQCG+GRTG ++A EHYG
Sbjct: 183 KTAAIMIEPVQGEGGIHVADKDYLKAVRDLCDDKNIVLIFDEVQCGMGRTGRMFAFEHYG 242
Query: 306 IFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
+ PDI+TLAK L GG+PIGA ++ E++A A++YGDHG+TF G+PL C+AA+A ++ I
Sbjct: 243 VEPDILTLAKALGGGVPIGAVVLKEEIAKALSYGDHGTTFGGNPLACSAALASVEVIEEL 302
Query: 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVL 425
V +KG YF L+ + + +K+VRGLGL+IG E + + +V + G L+
Sbjct: 303 IKDDKVIEKGKYFIRKLENLIEKYNFIKEVRGLGLMIGAELEFNGADIVKKMLEKGFLI- 361
Query: 426 TAGKGNVVRLVPPLIISEQELDQAVEIL 453
V+R +PPLI+ ++ +D + L
Sbjct: 362 NCTSDTVLRFLPPLIVEKEHIDALINAL 389
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Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q9X2A5|ARGD_THEMA Acetylornithine aminotransferase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=argD PE=1 SV=1 | Back alignment and function description |
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Score = 358 bits (919), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 185/387 (47%), Positives = 252/387 (65%), Gaps = 9/387 (2%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L+ TY+R P GKG +YD +G YLD +SGIAVN LGH ++A+ DQA L H
Sbjct: 3 LMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 62
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
SN++++ PQ+ELA+ L +F +VFF+NTGTEANEAAIK ARK E
Sbjct: 63 CSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARK----YGKKKSEKKYR 118
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
+S NSFHGRT+G+L T + Y+ PFEP++PG + E+ N+E R+ + AVF+
Sbjct: 119 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFL 177
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
EPIQGE GI ATKEFL+ R CD+ ALLVFDEVQCG+GRTG L+A++ YG+ PD++T
Sbjct: 178 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT 237
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVS 372
AK L GG+PIGA +V E+ A+ + GDHG+TF G+PL C A + V+ +++ FL V
Sbjct: 238 TAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE 296
Query: 373 KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKG 430
+KG+Y + L++ V DVRG+GL+IGI+F +VS V C ++ LLV+ AG
Sbjct: 297 EKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGN- 355
Query: 431 NVVRLVPPLIISEQELDQAVEILCKTL 457
N +R +PPL + E+D AVE L K L
Sbjct: 356 NTIRFLPPLTVEYGEIDLAVETLKKVL 382
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Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q8R7C1|ARGD_THETN Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=argD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (887), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/390 (45%), Positives = 252/390 (64%), Gaps = 7/390 (1%)
Query: 69 EKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQAN 128
EKK L+ TYNR P++L G+G +++D+EG YLD +GIAVN+LGH ++A+ QA
Sbjct: 5 EKKYLMDTYNRYPIMLVKGEGTRVWDSEGNAYLDFVAGIAVNSLGHCHPALVEAIKKQAE 64
Query: 129 VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
L H SN+Y++ QIELA+ + SF +VFF+N+G EANE AIK ARK+ +
Sbjct: 65 TLIHCSNLYWNEKQIELARMISENSFGGKVFFANSGAEANEGAIKLARKYASLKYGGKR- 123
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
+ ++ NSFHGRT GAL T +E Y F P++ G +V +IEA + + +
Sbjct: 124 --YKIITAKNSFHGRTFGALTATGQEKYHKGFGPLLAGFKYVPLNDIEALYEAVDD-EVC 180
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
A+ +E IQGEGGI+ AT E+++ +R CD+ L + DEVQ G+GRTG L+ +EHYG+ P
Sbjct: 181 AIMLEVIQGEGGIHEATPEYVKAVRKICDENDLLFILDEVQTGIGRTGKLFGYEHYGVVP 240
Query: 309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368
DIMTLAK L GG PIGA + E A GDH STF G+PL C A IAVL++++ FL
Sbjct: 241 DIMTLAKGLGGGFPIGAIVAKEDKA-VFKPGDHASTFGGNPLACAAGIAVLNEVTKDGFL 299
Query: 369 ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-ATPVVDACRDSGLLVLTA 427
V KKG YF+E L+ ++ VK++RG GL++G E D+ A+ +V + GLL+ +
Sbjct: 300 EGVDKKGKYFREGLETLQKKHKVVKEIRGKGLMVGCEVDLEDASEIVLKALEKGLLINSV 359
Query: 428 GKGNVVRLVPPLIISEQELDQAVEILCKTL 457
NV+R VPPLI++E+E+D+A++IL L
Sbjct: 360 SH-NVLRFVPPLIVTEEEIDEALQILDDVL 388
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Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q97GH9|ARGD_CLOAB Acetylornithine aminotransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=argD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (874), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 174/385 (45%), Positives = 252/385 (65%), Gaps = 6/385 (1%)
Query: 70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV 129
K L+ TY R V G+G KLYD +G EY+D SG+AVN LGH + +KA+ +Q++
Sbjct: 3 KSYLMNTYGRFNVTFDKGEGTKLYDKDGNEYIDFVSGVAVNCLGHCNPSIVKAIEEQSSK 62
Query: 130 LTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
L HVSN Y++ +EL + L S D+VF N+GTEA EA +K ARK+ ++K+
Sbjct: 63 LMHVSNYYWNENAMELTEILCKNSEFDKVFMCNSGTEAIEAGLKLARKYALLHGDENKK- 121
Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249
E + NSFHGRTMGAL++T + Y+ F+P++ V V++ +++ ++ I KTAA
Sbjct: 122 --EIIYMDNSFHGRTMGALSVTGQPKYQESFKPLIGAVKSVKFNDLDDIKQKISS-KTAA 178
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
V VEPIQGEGGI A KE+L+ LRD CD+ ALL+FDEVQCG+GR G L+A++ + + PD
Sbjct: 179 VIVEPIQGEGGIIPAKKEYLKLLRDLCDENNALLIFDEVQCGMGRVGSLFAYQKFEVVPD 238
Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369
I+ +AK L GG PIGA L E VAS+ GDHG+T+ G+PL C AIAVL ++ + +
Sbjct: 239 IVCIAKALGGGFPIGAMLAKESVASSFVPGDHGNTYGGNPLACAVAIAVLKELVDKKVVE 298
Query: 370 -SVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG 428
+V++K Y + L + + DVRG+GL+IG+E +++ C +S LL++TAG
Sbjct: 299 INVNEKSKYLFDKLMTLKEKYKVINDVRGMGLLIGVEVACDVKKIINKCFESKLLLITAG 358
Query: 429 KGNVVRLVPPLIISEQELDQAVEIL 453
K NVVR +PPL +S +E+D+A+ I
Sbjct: 359 K-NVVRFLPPLNVSFEEIDKALGIF 382
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Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|O30156|ARGD_ARCFU Acetylornithine aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=argD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/389 (44%), Positives = 252/389 (64%), Gaps = 20/389 (5%)
Query: 66 MEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD 125
+E EKK ++ TY R VV+ G+GC +YD G+ YLDL +GIA ++GH ++ ++ + +
Sbjct: 4 IEREKKHILQTYTRQKVVIERGEGCYVYDVNGKRYLDLVAGIATVSIGHCNSHLVERLKE 63
Query: 126 QANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPD 185
Q L H+SN+YY+ PQ+ELA++L + DR FF N+G EA EAA+KFAR+
Sbjct: 64 QLEKLIHISNLYYTTPQVELAEKLSEIAGMDRFFFCNSGAEAVEAALKFARRATGRKK-- 121
Query: 186 SKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245
FVSFT FHGRTMGAL++T KE +R PFEP++ V F E+ N E+ K++
Sbjct: 122 -------FVSFTGDFHGRTMGALSVTHKEKFRKPFEPLVSPVEFAEFNNPESLEKVVDE- 173
Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
+TAAV VE +QGE G+Y A +EF++ + + + G LL+ DEVQ G GRTG +A +HYG
Sbjct: 174 ETAAVIVELVQGEAGVYPADREFVKAIEELREKYGFLLIVDEVQTGFGRTGRWFAKDHYG 233
Query: 306 IFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
I PD++T+AK + G+PIG + E+VA I GDHGSTF G+PL C AA+A ++ I
Sbjct: 234 IEPDMITMAKAMGSGVPIGCCALKEEVAEKIQVGDHGSTFGGNPLACTAALATIEVIERE 293
Query: 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-SATPVVDACRDSGLLV 424
+ + ++ G YF + LK+ ++V G+GL+IG FDV A V C ++GLLV
Sbjct: 294 GLVENSARMGEYFVKRLKESF------ENVIGVGLMIG--FDVGDAAEFVRKCLENGLLV 345
Query: 425 LTAGKGNVVRLVPPLIISEQELDQAVEIL 453
+ +RLVPPL+I+E+E+D+AVEI+
Sbjct: 346 NNTSERR-IRLVPPLVITEREVDKAVEIM 373
|
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q6C846|ARGD_YARLI Acetylornithine aminotransferase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ARG8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (866), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 178/406 (43%), Positives = 256/406 (63%), Gaps = 17/406 (4%)
Query: 60 RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
R +++ +K V TY + V+L GKG L+D+ +Y+D S+GIAV ALGH + +
Sbjct: 8 RQYSTLLQTAEKYSVPTYAKPSVILTKGKGAYLWDSNDNKYIDFSAGIAVTALGHSNPEI 67
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-------ADRVFFSNTGTEANEAAI 172
K + +Q++ L H SN++ + L + LV + A +VF +N+GTEANEAA+
Sbjct: 68 TKILAEQSSQLMHCSNLFNNEWAPRLQESLVEETLKSGGMKGARKVFLANSGTEANEAAL 127
Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232
KFARK S+PD TEFV+F +FHGRTMGAL++T Y++PF P++PGV Y
Sbjct: 128 KFARKVGTLSSPDK----TEFVNFEKAFHGRTMGALSVTPNPKYQAPFAPLVPGVKTGVY 183
Query: 233 GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
+ +A + + KT V VEP+QGEGG+Y A EFLQ LR+ CD+ GA+L+FDE+QCGL
Sbjct: 184 NDPKAADLITE--KTCGVIVEPVQGEGGVYKANDEFLQALRNKCDEVGAMLIFDEIQCGL 241
Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352
GRTG LWAH+ + PDI+T+AK L G PIGA +VTE VA I GDHG+T+ G+PL
Sbjct: 242 GRTGRLWAHDK--VHPDILTMAKALGNGFPIGATMVTEAVADKIAIGDHGTTYGGNPLAS 299
Query: 353 NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDVSAT 411
VL ++++ L +V K ++ + + P + +VRG GL++GI+F +
Sbjct: 300 RVGHYVLSQVASKEVLDNVKKVSQQIRDAVAEVQEEFPELITEVRGDGLLLGIQFSKDPS 359
Query: 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
VV A R++GLLV+TAG N VRLVP L I ++ + + +EIL K +
Sbjct: 360 KVVAAARENGLLVITAGT-NTVRLVPALNIDQEAVTEGLEILKKAI 404
|
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|O27392|ARGD_METTH Acetylornithine aminotransferase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=argD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/394 (44%), Positives = 249/394 (63%), Gaps = 13/394 (3%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
+++E++E E+K ++ TY R P+VL+ GKG ++D EG Y+D +G+AVN++GH
Sbjct: 2 DSEEIIELERKFIMQTYTRQPIVLSHGKGATVWDIEGNSYIDCFAGVAVNSIGHAHPKVA 61
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
A+ QA L H SN+YY+ Q+ELAK L A S DRVFF+N+G EANE AIK ARKF
Sbjct: 62 LAICHQAQRLIHSSNIYYTREQVELAKLLTAISPHDRVFFANSGAEANEGAIKLARKFTG 121
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
S E ++ NSFHGRT+ + T ++ Y PF P+ G V YG+I A
Sbjct: 122 KS---------EIIAAENSFHGRTLATVTATGQKKYSEPFRPLPEGFKHVPYGDIGAMAD 172
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+ +TAA+ +EP+QGEGG+ + +L+ +++ LL+ DEVQ G GRTG ++A
Sbjct: 173 AVGD-ETAAIILEPVQGEGGVIIPPEGYLKDVQELARQNDVLLILDEVQTGFGRTGAMFA 231
Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
+ +G+ PDI T+AK + GG PIGA L E+VA A GDHGSTF G+P C AAIA ++
Sbjct: 232 SQLFGVEPDITTVAKAMGGGYPIGAVLANERVAMAFEPGDHGSTFGGNPWGCAAAIATIE 291
Query: 361 KISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDS 420
+ + +K G YF L+Q L V+D+RG+GL+IGIE D VVDA R+
Sbjct: 292 VLMDEKLPERAAKMGSYFLGRLRQVLHGCDAVRDIRGVGLMIGIEIDGECAGVVDAAREM 351
Query: 421 GLLV-LTAGKGNVVRLVPPLIISEQELDQAVEIL 453
G+L+ TAGK V+R+VPPL+I ++E+D AV++L
Sbjct: 352 GVLINCTAGK--VIRIVPPLVIKKEEIDAAVDVL 383
|
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | ||||||
| 255544652 | 470 | acetylornithine aminotransferase, putati | 0.993 | 0.982 | 0.756 | 0.0 | |
| 225465060 | 467 | PREDICTED: acetylornithine aminotransfer | 0.963 | 0.959 | 0.751 | 0.0 | |
| 118486369 | 452 | unknown [Populus trichocarpa] gi|1184870 | 0.967 | 0.995 | 0.718 | 0.0 | |
| 225443065 | 463 | PREDICTED: acetylornithine aminotransfer | 0.987 | 0.991 | 0.737 | 0.0 | |
| 224083964 | 394 | predicted protein [Populus trichocarpa] | 0.845 | 0.997 | 0.811 | 0.0 | |
| 224140799 | 398 | predicted protein [Populus trichocarpa] | 0.855 | 1.0 | 0.802 | 0.0 | |
| 2811029 | 451 | RecName: Full=Acetylornithine aminotrans | 0.916 | 0.944 | 0.748 | 0.0 | |
| 356520746 | 467 | PREDICTED: acetylornithine aminotransfer | 0.972 | 0.967 | 0.697 | 0.0 | |
| 356536077 | 463 | PREDICTED: acetylornithine aminotransfer | 0.913 | 0.917 | 0.741 | 0.0 | |
| 217072680 | 470 | unknown [Medicago truncatula] | 0.870 | 0.861 | 0.758 | 0.0 |
| >gi|255544652|ref|XP_002513387.1| acetylornithine aminotransferase, putative [Ricinus communis] gi|223547295|gb|EEF48790.1| acetylornithine aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/468 (75%), Positives = 397/468 (84%), Gaps = 6/468 (1%)
Query: 1 MQNAMSSTFQAP--LQVPLSQSGNLRRQI-KFNGVKRRPMVAAASVNVEVNDAARGSAGG 57
M ++T P L+ SQ R QI +FNG R +A A +NV+V G
Sbjct: 5 MHICSNTTISHPINLRCLFSQDRRGRPQIIRFNG---RKSIATACLNVDVRAQNSDGKVG 61
Query: 58 LGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
+ R +KEVMEAE K +VGTY RAPVVLASGKGCKLYD EGREYLD++SGIAVNALGH D
Sbjct: 62 VVRESKEVMEAEGKFMVGTYARAPVVLASGKGCKLYDVEGREYLDMTSGIAVNALGHCDP 121
Query: 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177
DW+KAVVDQA+VLTHVSN+YYSIPQ+ELAK LVACSFADRVFF+N+GTEANEAA+KFARK
Sbjct: 122 DWVKAVVDQADVLTHVSNVYYSIPQVELAKHLVACSFADRVFFTNSGTEANEAAMKFARK 181
Query: 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237
+QRHSNP++ EPATEF+SF+N FHGRTMGALALTSKE YRSPFEP++PGV FVEYGNIEA
Sbjct: 182 YQRHSNPNAAEPATEFISFSNCFHGRTMGALALTSKEQYRSPFEPLVPGVTFVEYGNIEA 241
Query: 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
TRKLIQ GKTAAVFVEPIQGEGGIYSATKEFL+FLR ACDDAGALLVFDEVQCGLGRTGY
Sbjct: 242 TRKLIQRGKTAAVFVEPIQGEGGIYSATKEFLEFLRAACDDAGALLVFDEVQCGLGRTGY 301
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA 357
LWAHE YG+FPDIMTLAKPLAGGLPIGA LVTE+VASAINYGDHGSTFAG LVCNAA+
Sbjct: 302 LWAHEAYGVFPDIMTLAKPLAGGLPIGAILVTERVASAINYGDHGSTFAGGSLVCNAALT 361
Query: 358 VLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC 417
V+ KI P FLASVSKKG YFKE LKQKL N HVK++RG+GLIIGIE DVSA+P+VDAC
Sbjct: 362 VVQKIGKPDFLASVSKKGLYFKEILKQKLGGNSHVKEIRGVGLIIGIELDVSASPLVDAC 421
Query: 418 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNSN 465
R+SGLLVLTAGKGNVVRLVPPLII+E+EL A +IL TLPVL+ + +
Sbjct: 422 RNSGLLVLTAGKGNVVRLVPPLIITEEELGSAADILQNTLPVLNESDS 469
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465060|ref|XP_002268013.1| PREDICTED: acetylornithine aminotransferase, mitochondrial [Vitis vinifera] gi|296082676|emb|CBI21681.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/455 (75%), Positives = 393/455 (86%), Gaps = 7/455 (1%)
Query: 17 LSQSGNLRRQIKFNGVKRRPMV-----AAASVNVEVNDAARGSAGGLG-RNNKEVMEAEK 70
+SQ+ + R K G + V +A +NVEV + G LG +K+VME E
Sbjct: 12 VSQANTVHRVFKLEGGRTLVQVNGQRAVSACLNVEVKAPKSANLGKLGFGESKDVMEMEG 71
Query: 71 KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
+++VGTY R P+VL SGKGCKLYDAEGREYLD+SSGIAVN+LGHGD W+KAV++QAN L
Sbjct: 72 RVIVGTYARTPIVLVSGKGCKLYDAEGREYLDMSSGIAVNSLGHGDPTWLKAVIEQANTL 131
Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
THVSN+YYSIPQ+ELAKRLVACSF+DRVFFSN+GTEANEAAIKFARKFQRHS+PD+KEP
Sbjct: 132 THVSNIYYSIPQVELAKRLVACSFSDRVFFSNSGTEANEAAIKFARKFQRHSHPDAKEPP 191
Query: 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250
T+F++FTNSFHGRTMGALALTSKEHYRSPFEPVMPGV FVEYGNIEAT++LIQ GKTAAV
Sbjct: 192 TDFIAFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVTFVEYGNIEATKELIQKGKTAAV 251
Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
FVEPIQGEGGIYSATKEFLQFLR ACDDAG LLVFDEVQCGLGRTG+LWAHE YG+FPDI
Sbjct: 252 FVEPIQGEGGIYSATKEFLQFLRSACDDAGVLLVFDEVQCGLGRTGHLWAHESYGVFPDI 311
Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
MTLAKPLAGGLPIGA LVTE+VASAIN+GDHGSTFAGSPLVCNAA+AVL+KIS P+FLAS
Sbjct: 312 MTLAKPLAGGLPIGAVLVTERVASAINFGDHGSTFAGSPLVCNAALAVLEKISEPSFLAS 371
Query: 371 VSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKG 430
V+KKG Y K+ L QKL NPHVK+VRG GLI+GIE DV A+P+V AC+++GLLVLT+GKG
Sbjct: 372 VAKKGQYLKQILTQKLGHNPHVKEVRGFGLIVGIELDVQASPLVVACQEAGLLVLTSGKG 431
Query: 431 NVVRLVPPLIISEQELDQAVEILCKTLPVLD-SNS 464
NVVRLVPPLII+E+EL+ A E+L +LP LD SNS
Sbjct: 432 NVVRLVPPLIITEEELELAAEVLSGSLPALDGSNS 466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118486369|gb|ABK95025.1| unknown [Populus trichocarpa] gi|118487098|gb|ABK95379.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/461 (71%), Positives = 383/461 (83%), Gaps = 11/461 (2%)
Query: 4 AMSSTFQAPLQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNK 63
++ +P+ VP S + N RR A +++V D+ + ++
Sbjct: 3 SLQHFLNSPISVPFSPNLNHRRSFFLR--------ACLNLDVHAPDSVKPKTH---LKSR 51
Query: 64 EVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAV 123
EVME E K+LVGTY R PVV++SGKGCKLYD EGREYLD +SGIAVNALGHGD DW+KAV
Sbjct: 52 EVMEMEGKVLVGTYARNPVVISSGKGCKLYDPEGREYLDCTSGIAVNALGHGDPDWVKAV 111
Query: 124 VDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSN 183
V+QAN+LTHVSN++YS+PQ+ELA+RLVACSFADRVFF+N+GTEANEAAIKFARK+QR +N
Sbjct: 112 VEQANLLTHVSNVFYSVPQVELARRLVACSFADRVFFTNSGTEANEAAIKFARKYQRFTN 171
Query: 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243
PD K+ TEF+SF+NSFHGRTMGALALTSKE YR PFEPVMPGVNF+EYG+++A +LI+
Sbjct: 172 PDEKQQVTEFISFSNSFHGRTMGALALTSKEQYRFPFEPVMPGVNFLEYGDVQAATELIK 231
Query: 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303
G+ AAVFVEPIQGEGGIYSATKEFLQ LR ACDDAG+LLVFDEVQCGLGRTGYLWAHE
Sbjct: 232 SGRIAAVFVEPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGYLWAHEA 291
Query: 304 YGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS 363
YG+ PDIMTLAKPLAGGLPIGAALV+EKVA+AI YGDHGSTFAG PLVCNAAIAVLDKIS
Sbjct: 292 YGVVPDIMTLAKPLAGGLPIGAALVSEKVAAAIKYGDHGSTFAGGPLVCNAAIAVLDKIS 351
Query: 364 NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLL 423
P FLASVS+KG YFKE L KL N HV++VRGLGLIIGIE DVSA+P+VDACRDS LL
Sbjct: 352 KPGFLASVSEKGQYFKELLIHKLGGNSHVREVRGLGLIIGIELDVSASPLVDACRDSSLL 411
Query: 424 VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 464
+LTAGKGNVVRLVPPLIISEQEL++A EI+ + LP LD S
Sbjct: 412 ILTAGKGNVVRLVPPLIISEQELERAAEIILECLPALDKTS 452
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443065|ref|XP_002272158.1| PREDICTED: acetylornithine aminotransferase, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/461 (73%), Positives = 385/461 (83%), Gaps = 2/461 (0%)
Query: 7 STFQAPLQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRN--NKE 64
++ Q L L + +LR A A V V V G +G +G +KE
Sbjct: 2 ASIQFLLNNTLPSASDLRHSFSGLSGSSNGGRAIACVKVGVQAPGSGDSGKMGFRGASKE 61
Query: 65 VMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVV 124
VMEAE +L+VGTY RAPVV++ G+GCKLYDAEGREYLD+++GIAVNALGHGD DW+KAVV
Sbjct: 62 VMEAEGRLMVGTYARAPVVISHGEGCKLYDAEGREYLDMTAGIAVNALGHGDPDWLKAVV 121
Query: 125 DQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNP 184
+QAN LTHVSNM+YSIPQ+ELA+RLV+CSFADRVFFSN+GTEANEAAIKFARKFQR +P
Sbjct: 122 EQANTLTHVSNMFYSIPQVELAERLVSCSFADRVFFSNSGTEANEAAIKFARKFQRFLHP 181
Query: 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP 244
D K+ ATEF+SF+NSFHGRTMG+LALTSKE+YRSPFEPVMPGV F+EYGNI A R+LIQ
Sbjct: 182 DQKQLATEFISFSNSFHGRTMGSLALTSKEYYRSPFEPVMPGVTFLEYGNIHAARELIQS 241
Query: 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY 304
GK AAVFVEPIQGEGGIYSATKEFLQ LR ACDDAG+LLVFDEVQCGLGRTGYLWAHE Y
Sbjct: 242 GKIAAVFVEPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGYLWAHESY 301
Query: 305 GIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364
GIFPDIMTLAKPLAGGLPIGA LVTE+VASAI YGDHGSTFAG PLVC AA+AVLDKIS
Sbjct: 302 GIFPDIMTLAKPLAGGLPIGAVLVTERVASAIKYGDHGSTFAGGPLVCKAAVAVLDKISK 361
Query: 365 PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLV 424
P FL SVSKKG YFKE L QKL NPHV++VRGLGLI+GIE DV A+P+VDACR+SGLL+
Sbjct: 362 PTFLDSVSKKGQYFKELLMQKLGGNPHVREVRGLGLIVGIELDVPASPLVDACRNSGLLI 421
Query: 425 LTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNSN 465
LTAGKGNV+R+VPPLIISE+EL+ A EIL K LPVLD +
Sbjct: 422 LTAGKGNVIRIVPPLIISEEELELAAEILLKCLPVLDKTKS 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083964|ref|XP_002307189.1| predicted protein [Populus trichocarpa] gi|222856638|gb|EEE94185.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/393 (81%), Positives = 355/393 (90%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
+VGTY RAPVVL SGKGCKLYD EGREYLD++SGIAVNALGH D DW+KAV DQA+VLTH
Sbjct: 1 MVGTYGRAPVVLVSGKGCKLYDVEGREYLDMTSGIAVNALGHCDPDWVKAVADQAHVLTH 60
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
VSN+YYS+PQ+ELAKRLV CSFADRVFF+N+G EANEAAIKFARKFQRHSNPD K+PATE
Sbjct: 61 VSNVYYSVPQVELAKRLVDCSFADRVFFTNSGAEANEAAIKFARKFQRHSNPDVKDPATE 120
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
F+SFTNSFHGRTMGALALTSKE YR+PFEPVMPGV FVEYGNI+AT++LI+ GKTAAVFV
Sbjct: 121 FISFTNSFHGRTMGALALTSKEQYRTPFEPVMPGVTFVEYGNIKATQELIRRGKTAAVFV 180
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
EPIQGEGGIYSATK FL+FLR ACDDAGALLVFDEVQCGLGRTGYLWAHE YGIFPDIMT
Sbjct: 181 EPIQGEGGIYSATKAFLEFLRTACDDAGALLVFDEVQCGLGRTGYLWAHEAYGIFPDIMT 240
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVS 372
LAKPLAGGLPIGAALVTE+VAS+INYGDHGSTFAG LVCNAA+ VL+KIS P FL+SVS
Sbjct: 241 LAKPLAGGLPIGAALVTERVASSINYGDHGSTFAGGSLVCNAALTVLEKISKPEFLSSVS 300
Query: 373 KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNV 432
KKG Y KE L+QKL RN HVK++RGLG IIGIE DV A+P+V ACR+SGLLVLTAGKGNV
Sbjct: 301 KKGLYLKEILQQKLGRNSHVKEIRGLGFIIGIELDVPASPLVSACRNSGLLVLTAGKGNV 360
Query: 433 VRLVPPLIISEQELDQAVEILCKTLPVLDSNSN 465
VRLVPPL +++QEL A +IL + VLD N++
Sbjct: 361 VRLVPPLTVTKQELRLASDILQNAMSVLDENNS 393
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140799|ref|XP_002323766.1| predicted protein [Populus trichocarpa] gi|222866768|gb|EEF03899.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/399 (80%), Positives = 360/399 (90%), Gaps = 1/399 (0%)
Query: 66 MEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD 125
ME E K+LVGTY R PVV++SGKGCKLYD EGREYLD +SGIAVNALGHGD DW+KAVV+
Sbjct: 1 MEMEGKVLVGTYARNPVVISSGKGCKLYDPEGREYLDCTSGIAVNALGHGDPDWVKAVVE 60
Query: 126 QANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPD 185
QAN+LTHVSN++YS+PQ+ELAKRLVACSFADRVFF+N+GTEANEAAIKFARK+QR +NP+
Sbjct: 61 QANLLTHVSNVFYSVPQVELAKRLVACSFADRVFFTNSGTEANEAAIKFARKYQRFTNPE 120
Query: 186 SKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245
K+ ATEF+SF+NSFHGRTMGALALTSKE YR PFEPVMPGVNF+EYG+++A +LI+ G
Sbjct: 121 -KQQATEFISFSNSFHGRTMGALALTSKEQYRFPFEPVMPGVNFLEYGDVQAATELIKSG 179
Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
+ AAVFVEPIQGEGGIYSATKEFLQ LR ACDDAG+LLVFDEVQCGLGRTGYLWAHE YG
Sbjct: 180 RIAAVFVEPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGYLWAHEAYG 239
Query: 306 IFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
+ PDIMTLAKPLAGGLPIGAALV+EKVA+AI YGDHGSTFAG PLVCNAAIAVLDKIS P
Sbjct: 240 VVPDIMTLAKPLAGGLPIGAALVSEKVAAAIKYGDHGSTFAGGPLVCNAAIAVLDKISKP 299
Query: 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVL 425
FLASVS+KG YFKE L KL N HV++VRGLGLIIGIE DVSA+P+VDACRDS LL+L
Sbjct: 300 GFLASVSEKGQYFKELLIHKLGGNSHVREVRGLGLIIGIELDVSASPLVDACRDSSLLIL 359
Query: 426 TAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 464
TAGKGNVVRLVPPLIISEQEL++A EI+ + LP LD S
Sbjct: 360 TAGKGNVVRLVPPLIISEQELERAAEIILECLPALDKTS 398
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2811029|sp|O04866.1|ARGD_ALNGL RecName: Full=Acetylornithine aminotransferase, mitochondrial; Short=ACOAT; AltName: Full=Acetylornithine transaminase; Short=AOTA; Flags: Precursor gi|1944511|emb|CAA69936.1| acetylornithine aminotransferase [Alnus glutinosa] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/429 (74%), Positives = 365/429 (85%), Gaps = 3/429 (0%)
Query: 35 RPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYD 94
R + +A NVEV + G+ +KEVMEA ++LVGTY R PVVL+ GKGCKLYD
Sbjct: 25 RHLQVSACANVEVQAPSSVKKQGV---SKEVMEAAGRVLVGTYARVPVVLSRGKGCKLYD 81
Query: 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF 154
EGREYLDLS+GIAVN LGH D+DW++AV +QA LTHVSN++YSIPQ+ELAKRLVA SF
Sbjct: 82 PEGREYLDLSAGIAVNVLGHADSDWLRAVTEQAATLTHVSNVFYSIPQVELAKRLVASSF 141
Query: 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
ADRVFFSN+GTEANEAAIKFARKFQR + PD K+PATEFVSF+NSFHGRTMG+LALTSKE
Sbjct: 142 ADRVFFSNSGTEANEAAIKFARKFQRFTRPDEKQPATEFVSFSNSFHGRTMGSLALTSKE 201
Query: 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274
+YRSPFEPVMPGV F+EYGNIEA +LIQ K AAVFVEPIQGEGG+YSATKEFL LR
Sbjct: 202 NYRSPFEPVMPGVTFLEYGNIEAATQLIQRRKIAAVFVEPIQGEGGVYSATKEFLYALRK 261
Query: 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVAS 334
ACDD+G LLVFDEVQCGLGRTGYLWAHE Y +FPDIMTLAKPLAGGLPIGA LVTE+VAS
Sbjct: 262 ACDDSGTLLVFDEVQCGLGRTGYLWAHEIYDVFPDIMTLAKPLAGGLPIGAVLVTERVAS 321
Query: 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394
AI YGDHG+TFAG PLVC AA+ VLDKI P FLASVSKKGHYFKE L KL N HV++
Sbjct: 322 AITYGDHGTTFAGGPLVCKAALTVLDKILRPGFLASVSKKGHYFKEMLINKLGGNSHVRE 381
Query: 395 VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454
VRG+GLI+GIE DVSA+P+V+AC +SGLLVLTAGKGNVVR+VPPLII+EQEL++A EIL
Sbjct: 382 VRGVGLIVGIELDVSASPLVNACLNSGLLVLTAGKGNVVRIVPPLIITEQELEKAAEILL 441
Query: 455 KTLPVLDSN 463
+ LP LD +
Sbjct: 442 QCLPALDRH 450
|
Source: Alnus glutinosa Species: Alnus glutinosa Genus: Alnus Family: Betulaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520746|ref|XP_003529021.1| PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/470 (69%), Positives = 383/470 (81%), Gaps = 18/470 (3%)
Query: 7 STFQAPLQVPLSQSG-------NLRRQIKFNGVKRRPM-------VAAASVNVEVNDAAR 52
S+F L +SQS NL R+ G R P+ V +A +NV+V+
Sbjct: 2 SSFYMSLNPSISQSCYKPKQFFNLERESTLVG--RSPVIQIRCRRVVSACLNVDVDAPDS 59
Query: 53 GSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNAL 112
G K+V+E E K LVGTY R PVVL G+GCKLYD EGREYLDLS+GIAVNAL
Sbjct: 60 GKTAL--EKTKDVIEMEGKFLVGTYARTPVVLERGEGCKLYDVEGREYLDLSAGIAVNAL 117
Query: 113 GHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAI 172
GHGDADW+KAVV+QA LTH SN++++IPQ+ELAKRLVA SFADRVFF+N+GTEANEAAI
Sbjct: 118 GHGDADWLKAVVEQAGTLTHTSNIFHTIPQVELAKRLVASSFADRVFFANSGTEANEAAI 177
Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232
KFARK+QR + D KEPATEF++F+N FHGRT+GALALTSK YR+PFEPVMPGV F+EY
Sbjct: 178 KFARKYQRDTTTDGKEPATEFIAFSNCFHGRTLGALALTSKVQYRTPFEPVMPGVTFLEY 237
Query: 233 GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
GN +A +LI+ GK AAVFVEPIQGEGGIYSATKEFLQ L ACD+AGALLVFDEVQCGL
Sbjct: 238 GNAQAAVELIKQGKIAAVFVEPIQGEGGIYSATKEFLQSLHSACDEAGALLVFDEVQCGL 297
Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352
GR+G+LWAHE +G+FPD+MTLAKPLAGGLPIGA LVTE+VAS+INYGDHGSTFAG+PLVC
Sbjct: 298 GRSGFLWAHEAFGVFPDMMTLAKPLAGGLPIGAVLVTERVASSINYGDHGSTFAGNPLVC 357
Query: 353 NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATP 412
+AA+AV DKIS P FL+SVSKKG YFKE LKQKL N HVK++RG+GLIIGI+ DV A+P
Sbjct: 358 SAALAVFDKISKPDFLSSVSKKGLYFKELLKQKLGGNQHVKEIRGVGLIIGIDLDVPASP 417
Query: 413 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462
VDACR+SGLLVLTAGKGNVVRLVPPLII+E+EL+ A +ILCKTLPVLD+
Sbjct: 418 FVDACRNSGLLVLTAGKGNVVRLVPPLIITEKELELAADILCKTLPVLDN 467
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536077|ref|XP_003536567.1| PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/425 (74%), Positives = 368/425 (86%)
Query: 38 VAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEG 97
V +A +NV+V+ G+ + K+V+E E LVGTY R PVVL G+GCKLYD EG
Sbjct: 39 VVSACLNVDVDAPNTGNTTSEKKKTKDVIEMEGMYLVGTYARTPVVLERGEGCKLYDVEG 98
Query: 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
EYLDLS+GIAVNALGHGDADW+KAVV+QA LTH SN++++IPQ+ELAKRLVA SFADR
Sbjct: 99 NEYLDLSAGIAVNALGHGDADWLKAVVEQAGTLTHTSNIFHTIPQVELAKRLVASSFADR 158
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR 217
VFF+N+GTEANEAAIKFARK+QRH+ + K PATEF++F+N FHGRT+GALALTSK YR
Sbjct: 159 VFFANSGTEANEAAIKFARKYQRHTTSNGKVPATEFIAFSNCFHGRTLGALALTSKVQYR 218
Query: 218 SPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277
PFEPVMPGV F+EYGN +A +LI+ GK AAVFVEPIQGEGGIYSATKEFLQ LR+ACD
Sbjct: 219 MPFEPVMPGVTFLEYGNAQAAVELIKQGKIAAVFVEPIQGEGGIYSATKEFLQSLRNACD 278
Query: 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN 337
+ GALLVFDEVQCGLGR+G+LWAHE YG+FPD+MTLAKPLAGGLPIGA LVTE+VASAIN
Sbjct: 279 ETGALLVFDEVQCGLGRSGFLWAHEAYGVFPDMMTLAKPLAGGLPIGALLVTERVASAIN 338
Query: 338 YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG 397
YGDHGSTFAGSPLVC+AA+AVLDKIS P FL+SVSKKG YFKE L++KL N HVK++RG
Sbjct: 339 YGDHGSTFAGSPLVCSAALAVLDKISKPDFLSSVSKKGLYFKELLREKLGENRHVKEIRG 398
Query: 398 LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+GLIIGI+ DV A+P+VDACR SGLLVLTAGKGNVVRLVPPLII+E+EL+QA ILC+TL
Sbjct: 399 VGLIIGIDLDVPASPLVDACRSSGLLVLTAGKGNVVRLVPPLIITEKELEQAAGILCQTL 458
Query: 458 PVLDS 462
PVLD+
Sbjct: 459 PVLDN 463
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072680|gb|ACJ84700.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/405 (75%), Positives = 356/405 (87%)
Query: 60 RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+ KEV++ E K +VGTY RAP+VL GKGC++YD +G EYLD S GIAVNALGHGD DW
Sbjct: 66 KKTKEVIDEEAKYIVGTYARAPIVLEKGKGCEVYDVQGNEYLDCSGGIAVNALGHGDDDW 125
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
+KAVVDQA +LTHVSN+Y+S+PQ+ELAKRLVA SFA+RVFF+N+GTEANEAAIKF+RK+Q
Sbjct: 126 LKAVVDQAGLLTHVSNIYHSLPQVELAKRLVASSFANRVFFANSGTEANEAAIKFSRKYQ 185
Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
+H+ D K PATEF++F+N FHGRT+GALALTSK YR+PFEPVMPGV FVEYGN A
Sbjct: 186 KHTCTDGKVPATEFLAFSNCFHGRTLGALALTSKVQYRTPFEPVMPGVTFVEYGNAPAAV 245
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
+LIQ GK AAVFVEPIQGEGGIYSATKEFLQ LR+ACD+ GAL VFDEVQCGLGR+G+LW
Sbjct: 246 ELIQQGKIAAVFVEPIQGEGGIYSATKEFLQSLRNACDETGALPVFDEVQCGLGRSGFLW 305
Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
AHE +G+FPDIMTLAKPLAGGLPIGA LVTEKVASAINYGDHGSTFAG PL+CNAA+AVL
Sbjct: 306 AHEAFGVFPDIMTLAKPLAGGLPIGAVLVTEKVASAINYGDHGSTFAGGPLICNAALAVL 365
Query: 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRD 419
+KIS P FL+ VSKKG FKE LKQKL N HVK++RG+GLIIGI+ DVSATP+VDACRD
Sbjct: 366 NKISKPTFLSDVSKKGLCFKELLKQKLGGNRHVKEIRGVGLIIGIDLDVSATPLVDACRD 425
Query: 420 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 464
SGLLVLTAGKGNVVRLVPPLII+EQE++ A +IL +TL VLD+N+
Sbjct: 426 SGLLVLTAGKGNVVRLVPPLIITEQEIEHAADILSQTLHVLDANN 470
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | ||||||
| TAIR|locus:2198948 | 457 | WIN1 "AT1G80600" [Arabidopsis | 0.976 | 0.993 | 0.682 | 7.9e-165 | |
| DICTYBASE|DDB_G0269526 | 453 | argD "acetylornithine transami | 0.864 | 0.887 | 0.455 | 2.7e-93 | |
| UNIPROTKB|Q3A9W3 | 398 | argD "Acetylornithine aminotra | 0.815 | 0.952 | 0.487 | 2.8e-89 | |
| TIGR_CMR|CHY_2262 | 398 | CHY_2262 "acetylornithine amin | 0.815 | 0.952 | 0.487 | 2.8e-89 | |
| CGD|CAL0001267 | 455 | ARG8 [Candida albicans (taxid: | 0.924 | 0.945 | 0.412 | 2.9e-87 | |
| ASPGD|ASPL0000052571 | 476 | AN1150 [Emericella nidulans (t | 0.883 | 0.863 | 0.433 | 2.7e-84 | |
| TIGR_CMR|SPO_0962 | 391 | SPO_0962 "acetylornithine amin | 0.789 | 0.938 | 0.456 | 9.4e-82 | |
| TIGR_CMR|GSU_0151 | 399 | GSU_0151 "acetylornithine amin | 0.834 | 0.972 | 0.423 | 4.1e-81 | |
| TIGR_CMR|DET_1258 | 398 | DET_1258 "acetylornithine amin | 0.825 | 0.964 | 0.426 | 5.4e-79 | |
| TIGR_CMR|CJE_0278 | 393 | CJE_0278 "acetylornithine amin | 0.823 | 0.974 | 0.415 | 2.1e-77 |
| TAIR|locus:2198948 WIN1 "AT1G80600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1604 (569.7 bits), Expect = 7.9e-165, P = 7.9e-165
Identities = 314/460 (68%), Positives = 378/460 (82%)
Query: 5 MSSTFQAPL-QVPLSQSGNLRRQIKFNGVKRRPMVAA--ASVNVEVNDAARGSAGGLGRN 61
M+S Q L + P S+ G LRR+++ ++ R ASV D A +
Sbjct: 1 MASLSQITLPRAPSSEIGLLRRRLERPIIRTRIGFNGRIASVLTNAGDQAVSVKASV--- 57
Query: 62 NKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIK 121
+++V+E E K++VGTY RAPVVL+SGKGCKL+D EG+EYLD +SGIAVNALGHGD DW++
Sbjct: 58 SQKVIEEEAKVIVGTYARAPVVLSSGKGCKLFDPEGKEYLDCASGIAVNALGHGDPDWLR 117
Query: 122 AVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRH 181
AV +QA VL HVSN+YY+IPQIELAKRLVA SFADRVFF N+GTEANEAAIKF+RKFQR
Sbjct: 118 AVTEQAGVLAHVSNVYYTIPQIELAKRLVASSFADRVFFCNSGTEANEAAIKFSRKFQRF 177
Query: 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKL 241
++P+ KE AT F++FTNSFHGRT+GALALTSKE YR+PFEP+MPGV F+EYGNI+A L
Sbjct: 178 THPEDKEVATGFIAFTNSFHGRTLGALALTSKEQYRTPFEPIMPGVTFLEYGNIQAATDL 237
Query: 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301
I+ GK AAVFVEPIQGEGGIYSATKEFLQ LR ACD AG+LLVFDEVQCGLGRTG +WA+
Sbjct: 238 IRSGKIAAVFVEPIQGEGGIYSATKEFLQSLRSACDAAGSLLVFDEVQCGLGRTGLMWAY 297
Query: 302 EHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
E +G+ PDIMT+AKPLAGGLPIGA LVTEKVA INYGDHGSTFAGSPLVC+AAIAV+DK
Sbjct: 298 EAFGVTPDIMTVAKPLAGGLPIGAVLVTEKVAETINYGDHGSTFAGSPLVCSAAIAVMDK 357
Query: 362 ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSG 421
+S P+FL+SVS KG YF++ L +KL N HVK+VRG GLIIG+E DV A+ +VDACRDSG
Sbjct: 358 VSKPSFLSSVSNKGRYFRDLLVKKLGGNSHVKEVRGEGLIIGVELDVPASSLVDACRDSG 417
Query: 422 LLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461
LL+LTAGKGNVVR+VPPL+ISE+E+++AVEI+ + L LD
Sbjct: 418 LLILTAGKGNVVRIVPPLVISEEEIERAVEIMSQNLTALD 457
|
|
| DICTYBASE|DDB_G0269526 argD "acetylornithine transaminase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 190/417 (45%), Positives = 275/417 (65%)
Query: 58 LGRNNKE----VMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNAL 112
L R+NK+ ++ +++ TY R + +V GK LYD +G +YLD +GIAVNAL
Sbjct: 39 LDRDNKDGTSDYIKLHDNVIMNTYGRVSDIVFTHGKDSWLYDMKGDKYLDFGAGIAVNAL 98
Query: 113 GHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAA 171
GH + W + V +Q+ LTH+SN+YY+ P IELA+ ++A + D+VFF+N+GTEANEAA
Sbjct: 99 GHSNDGWSEVVANQSKKLTHLSNLYYNQPAIELAQSMIASTPIFDKVFFANSGTEANEAA 158
Query: 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231
+KFA+K K E ++F++ F GR+MG+L+ T K YR + P++PGV+F E
Sbjct: 159 LKFAKKIGIAKGGVDKH---EIIAFSHGFSGRSMGSLSCTHKSKYREIYGPLVPGVHFAE 215
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
Y +IE+ +KL+ KT AV +EP+QGEGG+ +AT EF+Q L C + LL+ DEVQCG
Sbjct: 216 YNDIESVKKLMSKSKTCAVIIEPVQGEGGLEAATVEFMQQLYKLCKENDCLLIVDEVQCG 275
Query: 292 LGRTGYLWAHEHYGIF---PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGS 348
+GRTG LWAH + PDIMTLAKPLAGGLPIGA LV++KVAS I GDHG+TF G
Sbjct: 276 IGRTGQLWAHTRFDTEKCKPDIMTLAKPLAGGLPIGAVLVSDKVASEIKPGDHGTTFGGG 335
Query: 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLG-LIIGIEF 406
PLVC V ++IS P+FL V +KG Y + LK+ + P+ + ++R +G L +GI+
Sbjct: 336 PLVCEVGKYVFERISQPSFLKEVQEKGKYLTDGLKKLKDQFPNSILEIRTVGGLFVGIQL 395
Query: 407 DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463
D + + +V + +L++ AG +V+R PPL I++QE+DQ + +L L ++SN
Sbjct: 396 DHNVSDLVSYAKSQKILIINAGD-DVIRFCPPLTITKQEIDQLLLVLKNYLIKVNSN 451
|
|
| UNIPROTKB|Q3A9W3 argD "Acetylornithine aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 190/390 (48%), Positives = 252/390 (64%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
KE++E E K L+ TY R PV L SGKG +YD G +YLDL +GIAVN LG+ A
Sbjct: 4 KELIEKESKYLMQTYRRKPVYLVSGKGSYVYDDAGNKYLDLVAGIAVNTLGYAHPKLTAA 63
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
V L H SN++Y+ PQ+ELA++LV S DRVFF+N+G EA E AIK ARK+
Sbjct: 64 VETAVKTLHHTSNLFYTRPQVELAQKLVENSPFDRVFFANSGAEAVEGAIKLARKYWWQK 123
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
E E +S NSFHGRTMGAL+ T +E Y+ PF P++PG +V Y ++ A K +
Sbjct: 124 G----EEKYEIISAVNSFHGRTMGALSATGQEKYQKPFRPLVPGFVYVPYNDLNALEKAL 179
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
KTAAV +EP+QGE G+ A +LQ + + C + LL+FDEVQ G+GRTG L+A E
Sbjct: 180 T-SKTAAVILEPVQGESGVNPADPAYLQKVAELCREKNILLIFDEVQTGVGRTGKLFAFE 238
Query: 303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362
H+G+ PDI+TLAK LAGG+PIGA L E+VA A GDH STF G+PL C AA+AVL+++
Sbjct: 239 HFGVVPDIITLAKGLAGGVPIGAVLAKEEVAKAFEPGDHASTFGGNPLACTAALAVLEEV 298
Query: 363 SNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-SATPVVDACRDSG 421
P FL V KG F TL LA P +K+VRG GL++GIE + A V + G
Sbjct: 299 LAPGFLEEVLDKGKLFY-TL---LADAPGIKEVRGYGLMLGIELNFPGAGRVSEILLAKG 354
Query: 422 LLVLTAGKGNVVRLVPPLIISEQELDQAVE 451
+L+ G+ ++R+VPPLII+ +E+ +A E
Sbjct: 355 VLINNVGEW-ILRIVPPLIITREEIREASE 383
|
|
| TIGR_CMR|CHY_2262 CHY_2262 "acetylornithine aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 190/390 (48%), Positives = 252/390 (64%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
KE++E E K L+ TY R PV L SGKG +YD G +YLDL +GIAVN LG+ A
Sbjct: 4 KELIEKESKYLMQTYRRKPVYLVSGKGSYVYDDAGNKYLDLVAGIAVNTLGYAHPKLTAA 63
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
V L H SN++Y+ PQ+ELA++LV S DRVFF+N+G EA E AIK ARK+
Sbjct: 64 VETAVKTLHHTSNLFYTRPQVELAQKLVENSPFDRVFFANSGAEAVEGAIKLARKYWWQK 123
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
E E +S NSFHGRTMGAL+ T +E Y+ PF P++PG +V Y ++ A K +
Sbjct: 124 G----EEKYEIISAVNSFHGRTMGALSATGQEKYQKPFRPLVPGFVYVPYNDLNALEKAL 179
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
KTAAV +EP+QGE G+ A +LQ + + C + LL+FDEVQ G+GRTG L+A E
Sbjct: 180 T-SKTAAVILEPVQGESGVNPADPAYLQKVAELCREKNILLIFDEVQTGVGRTGKLFAFE 238
Query: 303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362
H+G+ PDI+TLAK LAGG+PIGA L E+VA A GDH STF G+PL C AA+AVL+++
Sbjct: 239 HFGVVPDIITLAKGLAGGVPIGAVLAKEEVAKAFEPGDHASTFGGNPLACTAALAVLEEV 298
Query: 363 SNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-SATPVVDACRDSG 421
P FL V KG F TL LA P +K+VRG GL++GIE + A V + G
Sbjct: 299 LAPGFLEEVLDKGKLFY-TL---LADAPGIKEVRGYGLMLGIELNFPGAGRVSEILLAKG 354
Query: 422 LLVLTAGKGNVVRLVPPLIISEQELDQAVE 451
+L+ G+ ++R+VPPLII+ +E+ +A E
Sbjct: 355 VLINNVGEW-ILRIVPPLIITREEIREASE 383
|
|
| CGD|CAL0001267 ARG8 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 187/453 (41%), Positives = 267/453 (58%)
Query: 17 LSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGT 76
L S +++ FN + + V DA S G K + K V T
Sbjct: 10 LKTSTTIKKSFSFN-TATLSLPTYKKYSTSVPDANDESHTG-----KFINSISKPYSVTT 63
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
Y R +VL GKG +YD E R+Y+D +SGIAV LGH + + DQ+ L H SN+
Sbjct: 64 YARPNLVLTHGKGSYIYDLEDRKYIDFTSGIAVTCLGHSYEPITQLIKDQSEKLIHCSNL 123
Query: 137 YYSIPQIELAKRLVACS--F-----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
YY++P EL+ +L+ + F A RVF N+GTEANEAA+KFARK+ + NP+ E
Sbjct: 124 YYNLPAGELSNKLIVKTKEFDGMKDASRVFLCNSGTEANEAALKFARKYGKSINPEKYE- 182
Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249
F++F NSFHGR+MGAL++T Y+ PF P++PGV + +IE+ +++I KT A
Sbjct: 183 ---FITFENSFHGRSMGALSVTPNPKYQEPFSPLIPGVKIAKPNDIESVKQVINKDKTCA 239
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG--IF 307
V +EP+QGEGG+ + FL LR CD+ LL++DE+QCGLGRTG LWAH
Sbjct: 240 VIIEPLQGEGGVNIIDESFLIELRKLCDENNVLLIYDEIQCGLGRTGKLWAHSWLSPEAH 299
Query: 308 PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367
PDI+T+AK L G PIGA ++TEKV ++N GDHG+T+ G+PL ++D I + F
Sbjct: 300 PDIVTIAKALGNGFPIGATMITEKVEKSLNVGDHGTTYGGNPLASTVGSYIVDHIGDKEF 359
Query: 368 LASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLV 424
L V K F E L + NP+ ++ V+G GL++G++F +V +V CR GLL+
Sbjct: 360 LQQVENKSQIFLEGLNKIAEENPNLIEKVKGKGLLLGLQFKENVDIGEIVAKCRQHGLLI 419
Query: 425 LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+TAG N +RLVP L I +Q + +EIL +++
Sbjct: 420 ITAGM-NTIRLVPALNIPDQTIKDGLEILTQSI 451
|
|
| ASPGD|ASPL0000052571 AN1150 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 189/436 (43%), Positives = 257/436 (58%)
Query: 39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGR 98
A A V+ V A G + + LV TY R ++ G+GC L+D E R
Sbjct: 36 AQAGVSNNVKGAVVTPDPGADSVSAAFVNERAPYLVPTYVRPAPIMVKGQGCYLWDMENR 95
Query: 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLV-------A 151
YLDL++GIAVN+LGH D + K + +QA L H SN+Y++ L+K L+ A
Sbjct: 96 RYLDLTAGIAVNSLGHCDPEISKIIAEQAETLLHASNLYHNAWVGALSKDLIILTRESGA 155
Query: 152 CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211
A +VF +N+GTEANEAAIKFARK R +P + E VSF NSFHGRTMGAL+ T
Sbjct: 156 MRDAAQVFIANSGTEANEAAIKFARKTGRARDPSGAKH--EIVSFHNSFHGRTMGALSAT 213
Query: 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF 271
Y++PF P++PG + +Y ++ + L+ KT V VEPIQGEGG+ AT EFL
Sbjct: 214 PNPKYQTPFSPMLPGFKYGKYNDVAQLKDLVTE-KTCGVIVEPIQGEGGVNVATPEFLSA 272
Query: 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP--------DIMTLAKPLAGGLPI 323
LR CDD GA+L+FDE+QCGL RTG WAH H + P DI+T AK L G+PI
Sbjct: 273 LRKRCDDVGAVLIFDEIQCGLSRTGSFWAHAHPSLVPSSGEAAHPDILTTAKALGNGIPI 332
Query: 324 GAALVTEK-VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETL 382
GA +V+ K VA I GDHG+TF G+PL C A ++ ++++P SV K
Sbjct: 333 GATIVSGKTVADNIKAGDHGTTFGGNPLACRVAHHIIHRLASPELQKSVQDKSAILVAGF 392
Query: 383 KQKLARNPH-VKDVRGLGLIIGIE----FDVSATPVVDACRDSGLLVLTAGKGNVVRLVP 437
+ + P V +VRG GLI+G++ F A +V A R+ G+L++TAG+G +R VP
Sbjct: 393 QALQQKYPDLVSEVRGRGLILGLQLSKDFSARAGEIVTAARERGMLIITAGEG-CLRFVP 451
Query: 438 PLIISEQELDQAVEIL 453
PL I+E++L A+ IL
Sbjct: 452 PLTITEEQLKTALRIL 467
|
|
| TIGR_CMR|SPO_0962 SPO_0962 "acetylornithine aminotransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 172/377 (45%), Positives = 243/377 (64%)
Query: 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN 135
TY RAP+ G+G L +A+GR +LDL +GIAVNALGH +KA+ DQA L HVSN
Sbjct: 8 TYTRAPLHFVKGEGAWLTEADGRRFLDLGAGIAVNALGHAHPALVKALTDQAQNLWHVSN 67
Query: 136 MYYSIPQIE-LAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-TEF 193
+Y+ IPQ + LA +LV +FAD VFF+N+GTEA E A+K ARK+ D +P E
Sbjct: 68 LYH-IPQQQALADKLVEHTFADTVFFTNSGTEACELAVKMARKYFY----DKGQPERVEI 122
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253
++F SFHGR+ +A E F P++PG + +G+++ I KTAA+ +E
Sbjct: 123 ITFDGSFHGRSSAGIAAAGSEKMVKGFGPLLPGFVHLTFGDLDGVTNAITD-KTAAILIE 181
Query: 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313
P+QGEGGI L+ LR CDD G LL+ DEVQCG+GRTG L+AHE GI PDIM +
Sbjct: 182 PVQGEGGIRPVPDADLKALRQICDDHGLLLILDEVQCGVGRTGRLFAHEWAGITPDIMMV 241
Query: 314 AKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSK 373
AK + GG P+GA L TE+ AS + G HGST+ G+PL C AV+D +++P FLA V++
Sbjct: 242 AKGIGGGFPLGAVLATEEAASGMTVGTHGSTYGGNPLGCAVGCAVMDHVADPDFLAEVNR 301
Query: 374 KGHYFKETLKQKLARNPHV-KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNV 432
K ++ L+ +A +P+V ++VRG GL++G++ S VV A D+ L++ NV
Sbjct: 302 KAALLRQRLEGLIATHPNVFEEVRGSGLMLGLKCKASNLDVVKAGFDN-LVITVPAADNV 360
Query: 433 VRLVPPLIISEQELDQA 449
VRL+PPL ++E+++ +A
Sbjct: 361 VRLLPPLTLTEEDIAEA 377
|
|
| TIGR_CMR|GSU_0151 GSU_0151 "acetylornithine aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 167/394 (42%), Positives = 247/394 (62%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
N + + K ++ TY R P+V G+GC+++DA+G+EYLD +G+AVN LGH +
Sbjct: 2 NTTQWIAKADKYIMKTYGRYPLVPVRGEGCRVWDADGKEYLDFLAGVAVNNLGHCHPKVV 61
Query: 121 KAVVDQANVLTHVSNMYYSIP-QIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
+A+ QA + H SN YY IP QIELA+ L A SFAD+VFF N+G EANEAAIK ARK
Sbjct: 62 EALRTQAAEIIHCSN-YYHIPNQIELAELLCAHSFADKVFFCNSGAEANEAAIKLARKHA 120
Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
R D++ ++ SFHGRTM ++ T +E + F+P++ G +V + + A
Sbjct: 121 REKTGDAERYG--IITALASFHGRTMATISATGQEKVQKFFDPLLHGFTYVPFDDAAALE 178
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
+ P T AV +EPIQGEGG+ + ++ + +R+ CD G LL+FDEVQ G+GRTG L+
Sbjct: 179 AAVTP-TTCAVMLEPIQGEGGVVVPSADYFRKVREICDRHGLLLIFDEVQVGIGRTGKLF 237
Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
AHEH+ + PDIMTLAK LAGG PIGA L +++A++ + G HGSTF G+PLV A +A +
Sbjct: 238 AHEHFDVTPDIMTLAKALAGGAPIGAMLARDEIAASFSPGTHGSTFGGNPLVTAAGLAAV 297
Query: 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRD 419
+ L + G Y L++ + + DVRG+GL++G+E V A +V +
Sbjct: 298 RAVLEEGLLNRAEEMGEYLVGELERLKGKYDIITDVRGIGLMVGMELSVPAGDIVLKGLE 357
Query: 420 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453
G+L L + V+R VPPL++++QE++ + +L
Sbjct: 358 RGVL-LNVAQDRVLRFVPPLVVTKQEVNDMIAVL 390
|
|
| TIGR_CMR|DET_1258 DET_1258 "acetylornithine aminotransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 167/392 (42%), Positives = 244/392 (62%)
Query: 67 EAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQ 126
E E K + T+ RAP+ + G+G K++D +G+EYLD +G AVN+LGH +KAV +Q
Sbjct: 6 ELEHKYYMQTFYRAPITIVKGQGAKVWDDKGKEYLDFVAGWAVNSLGHCHPAVVKAVSEQ 65
Query: 127 ANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDS 186
A L SN +Y+IPQ++LAK LV S DR+FF N+GTEA E A+K AR++ +
Sbjct: 66 AGTLIQTSNNFYTIPQLKLAKLLVDNSVLDRIFFCNSGTEATEGAVKLARRYGKLK---- 121
Query: 187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246
+ A E ++ T SFHGRT+ ++ + + Y+ P+ P+ G VEY N +A + I K
Sbjct: 122 LKGAYEVITATGSFHGRTLAMVSASGQSKYQEPYTPLPTGFINVEYNNPQAIKTAITD-K 180
Query: 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI 306
T AV +EPIQGE G+ K +L+ +R CD+AG LL+ DE+Q G+GRTG L+A+EH GI
Sbjct: 181 TCAVMLEPIQGESGVNVPDKGYLKAVRQICDEAGILLILDEIQTGIGRTGKLFAYEHSGI 240
Query: 307 FPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA 366
PDI+TLAK LAGG+PIGA + E AS G+HGSTF G+PL C A A + I +
Sbjct: 241 EPDIITLAKGLAGGIPIGAFMAKES-ASVFAKGEHGSTFGGNPLACAAGYAAMKFILDNH 299
Query: 367 FLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-ATPVVDACRDSGLLVL 425
+ G Y E L++ ++ ++ RG GL++ ++F + A +V++C + GLL L
Sbjct: 300 ISENAGSMGSYLAEGLEKLKIKHSLIQGCRGCGLLMALDFKTNIAKEIVESCLEEGLL-L 358
Query: 426 TAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
A K N +R +PPL I++ ++D A+ L L
Sbjct: 359 NAVKPNALRFMPPLNITQADIDAAIAKLDSVL 390
|
|
| TIGR_CMR|CJE_0278 CJE_0278 "acetylornithine aminotransferase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 163/392 (41%), Positives = 244/392 (62%)
Query: 69 EKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQAN 128
E+ +V TY R +VL G+G L+D + ++YLD SSGI V ALG+ A + + Q +
Sbjct: 5 EQSHIVPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD 64
Query: 129 VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
L H SN+YY+ AK L S +RVFF+N+GTE+ E A+K ARK+ N K
Sbjct: 65 KLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYA--FNKGIK- 121
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
+F++F +SFHGRT+GAL+LT+ E Y+ PF+P++ GV F +Y +I + KL+ KT
Sbjct: 122 -GGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDILSVEKLVNE-KTC 179
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
A+ +E +QGEGGI A K+F + LR CD+ LL+ DE+QCG+GR+G +A+EH I P
Sbjct: 180 AIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILP 239
Query: 309 DIMTLAKPLAGGLPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367
DIMT AK L GL +GA ++ +KVAS ++ GDHGST+ G+PLVC AV +
Sbjct: 240 DIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKI 299
Query: 368 LASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVL 425
L +V+K Y +++L + + K +GLG + G+ D V V+ C+++ LL++
Sbjct: 300 LENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKNVKVAKVIQKCQENALLLI 359
Query: 426 TAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+ G+ N +R +PPLI+ ++ +D+ E L K L
Sbjct: 360 SCGE-NDLRFLPPLILQKEHIDEMSEKLRKAL 390
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9PIR7 | ARGD_CAMJE | 2, ., 6, ., 1, ., 1, 1 | 0.4081 | 0.8236 | 0.9745 | yes | no |
| B7LQ44 | ASTC_ESCF3 | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| B1IPI2 | ASTC_ECOLC | 2, ., 6, ., 1, ., 8, 1 | 0.4181 | 0.8086 | 0.9261 | yes | no |
| B7MVM7 | ASTC_ECO81 | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| Q97GH9 | ARGD_CLOAB | 2, ., 6, ., 1, ., 1, 1 | 0.4519 | 0.8150 | 0.9793 | yes | no |
| Q1C8B1 | ASTC_YERPA | 2, ., 6, ., 1, ., 8, 1 | 0.4205 | 0.8193 | 0.9202 | yes | no |
| B7NT29 | ASTC_ECO7I | 2, ., 6, ., 1, ., 8, 1 | 0.4233 | 0.8086 | 0.9261 | yes | no |
| Q58131 | ARGD_METJA | 2, ., 6, ., 1, ., 1, 1 | 0.4639 | 0.8236 | 0.9623 | yes | no |
| Q6C846 | ARGD_YARLI | 2, ., 6, ., 1, ., 1, 1 | 0.4384 | 0.8365 | 0.9464 | yes | no |
| Q59282 | ARGD_CORGL | 2, ., 6, ., 1, ., 1, 1 | 0.4306 | 0.8064 | 0.9590 | yes | no |
| Q1RB45 | ASTC_ECOUT | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| A1JS45 | ASTC_YERE8 | 2, ., 6, ., 1, ., 8, 1 | 0.4102 | 0.8193 | 0.9202 | yes | no |
| Q9M8M7 | ARGD_ARATH | 2, ., 6, ., 1, ., 1, 1 | 0.6759 | 0.9634 | 0.9803 | yes | no |
| B6IBG8 | ASTC_ECOSE | 2, ., 6, ., 1, ., 8, 1 | 0.4181 | 0.8086 | 0.9261 | yes | no |
| Q55DT8 | ARGD_DICDI | 2, ., 6, ., 1, ., 1, 1 | 0.4556 | 0.8645 | 0.8874 | yes | no |
| Q66B21 | ASTC_YERPS | 2, ., 6, ., 1, ., 8, 1 | 0.4230 | 0.8193 | 0.9202 | yes | no |
| A1ABS9 | ASTC_ECOK1 | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| P59322 | ARGD_THEEB | 2, ., 6, ., 1, ., 1, 1 | 0.4137 | 0.8193 | 0.9247 | yes | no |
| A9QZ63 | ASTC_YERPG | 2, ., 6, ., 1, ., 8, 1 | 0.4205 | 0.8193 | 0.9202 | yes | no |
| Q7VMS5 | ARGD_HAEDU | 2, ., 6, ., 1, ., 1, 1 | 0.4160 | 0.8322 | 0.9847 | yes | no |
| O04866 | ARGD_ALNGL | 2, ., 6, ., 1, ., 1, 1 | 0.7482 | 0.9161 | 0.9445 | N/A | no |
| P54752 | ARGD_NOSS1 | 2, ., 6, ., 1, ., 1, 1 | 0.4278 | 0.8172 | 0.8899 | yes | no |
| B2U3D0 | ASTC_SHIB3 | 2, ., 6, ., 1, ., 8, 1 | 0.4207 | 0.8086 | 0.9261 | yes | no |
| Q9X2A5 | ARGD_THEMA | 2, ., 6, ., 1, ., 1, 1 | 0.4780 | 0.8129 | 0.9818 | yes | no |
| O74548 | ARGD_SCHPO | 2, ., 6, ., 1, ., 1, 1 | 0.3936 | 0.8344 | 0.8798 | yes | no |
| Q3Z295 | ASTC_SHISS | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| B1LDY3 | ASTC_ECOSM | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| P18544 | ARGD_YEAST | 2, ., 6, ., 1, ., 1, 1 | 0.4222 | 0.8236 | 0.9054 | yes | no |
| Q0TH82 | ASTC_ECOL5 | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| B7L6M2 | ASTC_ECO55 | 2, ., 6, ., 1, ., 8, 1 | 0.4222 | 0.8107 | 0.9285 | yes | no |
| A7FIL6 | ASTC_YERP3 | 2, ., 6, ., 1, ., 8, 1 | 0.4205 | 0.8193 | 0.9202 | yes | no |
| B7N584 | ASTC_ECOLU | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| B7MAV9 | ASTC_ECO45 | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| Q321P0 | ASTC_SHIBS | 2, ., 6, ., 1, ., 8, 1 | 0.4207 | 0.8086 | 0.9261 | yes | no |
| Q8R7C1 | ARGD_THETN | 2, ., 6, ., 1, ., 1, 1 | 0.4538 | 0.8236 | 0.9745 | yes | no |
| Q6BUP9 | ARGD_DEBHA | 2, ., 6, ., 1, ., 1, 1 | 0.4 | 0.9290 | 0.9270 | yes | no |
| O27392 | ARGD_METTH | 2, ., 6, ., 1, ., 1, 1 | 0.4441 | 0.8193 | 0.9769 | yes | no |
| B5YQ35 | ASTC_ECO5E | 2, ., 6, ., 1, ., 8, 1 | 0.4233 | 0.8086 | 0.9261 | yes | no |
| Q8FGZ9 | ASTC_ECOL6 | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
| P59319 | ARGD_PSEPK | 2, ., 6, ., 1, ., 1, 1 | 0.4086 | 0.8279 | 0.9482 | yes | no |
| Q8D0D7 | ASTC_YERPE | 2, ., 6, ., 1, ., 8, 1 | 0.4205 | 0.8193 | 0.9202 | yes | no |
| B7USC9 | ASTC_ECO27 | 2, ., 6, ., 1, ., 8, 1 | 0.4259 | 0.8086 | 0.9261 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.983 |
| 4th Layer | 2.6.1.11 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00035727001 | SubName- Full=Chromosome undetermined scaffold_80, whole genome shotgun sequence; (467 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00036526001 | RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa) | • | • | • | • | • | 0.996 | |||
 | GSVIVG00023053001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (430 aa) | • | • | • | • | • | 0.991 | |||
 | GSVIVG00032389001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (351 aa) | • | • | • | • | 0.959 | ||||
 | GSVIVG00017913001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (430 aa) | • | • | • | • | 0.956 | ||||
 | GSVIVG00014587001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (261 aa) | • | • | • | • | 0.942 | ||||
 | GSVIVG00015101001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (525 aa) | • | • | • | • | 0.904 | ||||
 | GSVIVG00036294001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (206 aa) | • | 0.899 | |||||||
 | GSVIVG00015771001 | SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (433 aa) | • | 0.899 | |||||||
 | GSVIVG00030599001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (344 aa) | • | • | • | 0.745 | |||||
 | GSVIVG00001917001 | SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (381 aa) | • | • | • | • | 0.727 | ||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 465 | |||
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 0.0 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 0.0 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 0.0 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 1e-173 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 1e-170 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-157 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 1e-147 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 1e-137 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 1e-134 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 1e-132 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 1e-129 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 1e-127 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 1e-126 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 1e-122 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 1e-118 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 1e-115 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 1e-114 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 1e-110 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 1e-103 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 6e-99 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 2e-96 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 5e-96 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 6e-90 | |
| PRK04013 | 364 | PRK04013, argD, acetylornithine/acetyl-lysine amin | 3e-86 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 1e-84 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 1e-80 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 2e-80 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 1e-79 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 4e-79 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 1e-78 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 6e-78 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 2e-77 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 2e-77 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 2e-76 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 7e-76 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 4e-75 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 2e-74 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 3e-73 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 3e-72 | |
| TIGR02407 | 412 | TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu | 7e-72 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 8e-70 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 2e-68 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 4e-68 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 9e-67 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 3e-66 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 7e-64 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 9e-64 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 1e-60 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 1e-60 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 4e-60 | |
| PRK06931 | 459 | PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat | 3e-59 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 2e-58 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 9e-57 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 2e-56 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 5e-56 | |
| PRK06938 | 464 | PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat | 4e-54 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 3e-51 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 3e-50 | |
| PRK06148 | 1013 | PRK06148, PRK06148, hypothetical protein; Provisio | 4e-49 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 4e-49 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 9e-47 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 2e-46 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 2e-46 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 5e-46 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 4e-45 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 4e-45 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 6e-45 | |
| PRK05639 | 457 | PRK05639, PRK05639, 4-aminobutyrate aminotransfera | 8e-44 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 5e-43 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 2e-42 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 1e-40 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 6e-40 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 2e-39 | |
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 1e-33 | |
| PRK06149 | 972 | PRK06149, PRK06149, hypothetical protein; Provisio | 2e-32 | |
| TIGR00699 | 464 | TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran | 2e-32 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 3e-27 | |
| PRK06209 | 431 | PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a | 4e-21 | |
| PRK07046 | 453 | PRK07046, PRK07046, aminotransferase; Validated | 5e-16 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 9e-16 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-11 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 3e-08 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 6e-04 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 759 bits (1962), Expect = 0.0
Identities = 301/382 (78%), Positives = 336/382 (87%), Gaps = 4/382 (1%)
Query: 84 LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQI 143
SGKGCKLYD EG+EYLD+++GIAVNALGHGD DW+KAV +QA L HVSN+Y++IPQ+
Sbjct: 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQV 60
Query: 144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP----ATEFVSFTNS 199
ELAKRLVA SFADRVFF N+GTEANEAAIKFARK+QR PD K+P ATEFVSF+NS
Sbjct: 61 ELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNS 120
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG 259
FHGRT+GALALTSKE YR+PFEP+MPGV FVEYGN+EA RKLIQ GKTAAVFVEP+QGEG
Sbjct: 121 FHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEG 180
Query: 260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG 319
GIY ATKEFLQ LR CD+AGALLVFDEVQCGLGRTGYLWAHE YG+ PDIMTLAKPLAG
Sbjct: 181 GIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAG 240
Query: 320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379
GLPIGA LVTEKVASAIN GDHGSTFAG PLVCNAA+AVLDKIS P FLASV+KKG Y +
Sbjct: 241 GLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLR 300
Query: 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPL 439
E L++KL NPHVK+VRG+GL++GI+ DV A P+VDACRDSGLLVLTAGKG+VVRLVPPL
Sbjct: 301 ELLRRKLGGNPHVKEVRGVGLLVGIQLDVPAGPLVDACRDSGLLVLTAGKGDVVRLVPPL 360
Query: 440 IISEQELDQAVEILCKTLPVLD 461
+ISE EL+QAVEIL LP LD
Sbjct: 361 VISEAELEQAVEILADCLPALD 382
|
Length = 382 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 567 bits (1465), Expect = 0.0
Identities = 196/397 (49%), Positives = 266/397 (67%), Gaps = 6/397 (1%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
++ ++E EKK L+ TY R P+ G+G +L+D +G+EYLD +GIAVN LGH +
Sbjct: 2 TSEAIIELEKKYLMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLV 61
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
+A+ +QA L H SN+YY PQ ELA++LV S D+VFF N+G EANEAAIK ARK+
Sbjct: 62 EAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGH 121
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
E ++ NSFHGRT+ L+ T + Y+ FEP++ G +V + +IEA +
Sbjct: 122 KKG----IEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKA 177
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
I KTAAV +EPIQGEGG+ A KE+LQ LR+ CD+ G LL+ DEVQ G+GRTG L+A
Sbjct: 178 AITD-KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFA 236
Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
++HYGI PDIMTLAK L GG+PIGA L EKVA GDHGSTF G+PL C AA+AV++
Sbjct: 237 YQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIE 296
Query: 361 KISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDS 420
I L + ++ G Y + L++ L + P +K+VRGLGL+IGIE D A +V +
Sbjct: 297 IIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDRPAAEIVKKALEK 356
Query: 421 GLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
GLL+ G NV+RL+PPLIIS++E+D+AV+ L + L
Sbjct: 357 GLLINVTG-DNVLRLLPPLIISKEEIDEAVDRLEEVL 392
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Length = 396 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 540 bits (1394), Expect = 0.0
Identities = 203/400 (50%), Positives = 270/400 (67%), Gaps = 11/400 (2%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
+E K L+ TY R PVV+ G+G ++D +GREYLD ++GIAVN LGH +
Sbjct: 5 LTAATIELFMKYLMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALV 64
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQ 179
+A+ +QA L HVSN++Y+ PQ ELA++LV S FADRVFF N+G EANEAA+K ARK+
Sbjct: 65 EALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYT 124
Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
++ ++F NSFHGRT+GAL+ T + YR F P++PG V + +IEA
Sbjct: 125 GDPE------KSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALE 178
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
I TAAV VEPIQGEGG+ A EFL+ LR+ CD+ GALL+ DEVQ GLGRTG L+
Sbjct: 179 AAIDE-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF 237
Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
A+EHYG+ PDI+TLAK L GG PIGA L TE++ASA GDHGSTF G+PL C A+AVL
Sbjct: 238 AYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVL 297
Query: 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDAC 417
+ + L +V +KG Y + L++ R P VK+VRG GL+IGIE A +V A
Sbjct: 298 EVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRARDIVRAL 357
Query: 418 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
R+ G+LVL AG NV+R +PPL+I+E+E+D+A++ L + L
Sbjct: 358 REEGVLVLPAG-PNVIRFLPPLVITEEEIDEALDALERAL 396
|
Length = 404 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 489 bits (1261), Expect = e-173
Identities = 199/381 (52%), Positives = 263/381 (69%), Gaps = 7/381 (1%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L+ TY R PV + GKG +YD G+EYLD +GIAVN+LGH ++A+ +Q L H
Sbjct: 2 LMNTYGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVH 61
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
VSN+YY+ PQ ELA++LV S ADRVFF N+G EANEAA+K ARK+ + K+
Sbjct: 62 VSNLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKK---- 117
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
++F NSFHGRTMGAL+ T + Y+ FEP++PG ++ Y +IE+ +K I +TAAV V
Sbjct: 118 IIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID-DETAAVIV 176
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
EPIQGEGG+ A+ EFL+ LR+ C D ALL+FDEVQ G+GRTG +A+EHYGI PDI+T
Sbjct: 177 EPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIIT 236
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVS 372
LAK L GG+PIGA L E+VA A GDHGSTF G+PL C AA+AVL+ I L +V
Sbjct: 237 LAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVK 296
Query: 373 KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNV 432
+KG YFKE L++ L +N K+VRG GL++GIE + +V + GLLV AG V
Sbjct: 297 EKGDYFKERLEE-LGKNYPNKEVRGKGLMLGIELEAPCKDIVKKALEKGLLVNCAG-PKV 354
Query: 433 VRLVPPLIISEQELDQAVEIL 453
+R +PPLII+++E+D+AV L
Sbjct: 355 LRFLPPLIITKEEIDEAVSAL 375
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 483 bits (1247), Expect = e-170
Identities = 185/387 (47%), Positives = 251/387 (64%), Gaps = 8/387 (2%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L+ YNRA + G+G L D +G YLD +SGIAVN+LGH ++A+ +QA L H
Sbjct: 6 LLPVYNRADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWH 65
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS-NPDSKEPAT 191
VSN+Y Q LA+RLV SFAD+VFF+N+G EA E AIK AR++ +P+
Sbjct: 66 VSNLYRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPER----Y 121
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251
++F +FHGRT+ +A +E Y F P++PG + V +G+IEA + I P TAA+
Sbjct: 122 RIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP-NTAAIL 180
Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311
+EPIQGEGGI A EFL+ LR CD+ G LL+FDEVQCG+GRTG L+AHE G+ PDIM
Sbjct: 181 IEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIM 240
Query: 312 TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371
+AK + GG P+GA L TE+ A + G HGST+ G+PL AVLD I P FL +V
Sbjct: 241 AVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNV 300
Query: 372 SKKGHYFKETLKQKLARNPHV-KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKG 430
+ G Y K+ L+ + R P V ++VRG GL++G++ V +V A RD GLL + AG
Sbjct: 301 QRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVPNRDLVQALRDEGLLTVGAGD- 359
Query: 431 NVVRLVPPLIISEQELDQAVEILCKTL 457
NVVRL+PPLII+E+E+D+A+E L +
Sbjct: 360 NVVRLLPPLIITEEEIDEALERLERAA 386
|
Length = 389 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 450 bits (1161), Expect = e-157
Identities = 172/422 (40%), Positives = 246/422 (58%), Gaps = 40/422 (9%)
Query: 66 MEAEKKLLVGTYN--RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAV 123
E ++K+L Y P+V+ +G LYD +G YLD SGI V LGH + ++A+
Sbjct: 2 FERDRKVLWHGYTVRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEAL 61
Query: 124 VDQANVLTHVSNMY-YSIPQIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQR 180
+Q LTH S + Y+ P +ELA+ L+A + D+VFF N+GTEA EAA+K AR +
Sbjct: 62 KEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTG 121
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN------ 234
+SF ++HGRT+GAL+LT + YR F P++PGV V Y
Sbjct: 122 RKK---------IISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPA 172
Query: 235 -----IEATRKLI--QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
+EA + + P + AAV VEPIQGEGG+ +L+ LR+ C G LL+ DE
Sbjct: 173 ELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADE 232
Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN--YGDHGSTF 345
VQ G GRTG ++A EH+G+ PDI+TL K L GGLP+GA L E++ A G HG TF
Sbjct: 233 VQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTF 292
Query: 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405
G+PL C AA+AVL+ + L + ++ G Y +E L++ ++P V DVRG GL+IGIE
Sbjct: 293 GGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIE 352
Query: 406 F----------DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455
A ++ A + GLL+ +G GNV+RL+PPLII+E+E+D+ ++ L +
Sbjct: 353 LVKDRATKPPDKELAAKIIKAALERGLLLRPSG-GNVIRLLPPLIITEEEIDEGLDALDE 411
Query: 456 TL 457
L
Sbjct: 412 AL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 425 bits (1096), Expect = e-147
Identities = 177/391 (45%), Positives = 232/391 (59%), Gaps = 22/391 (5%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
++ Y P+ L G+G ++D +G+EYLDL GIAVNALGH ++AV Q L H
Sbjct: 18 MMNNYGTPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGH 77
Query: 133 VSNMYYSIPQIELAKRLVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
VSN++ + PQI LA+RLV A RVFF N+G EANEAA K AR R
Sbjct: 78 VSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGR--------- 128
Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249
T+ V+ FHGRTMGALALT + R+PFEP+ GV V YG+++A + TAA
Sbjct: 129 -TKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD-DDTAA 186
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
VF+EPIQGE G+ +L R+ D GALLV DEVQ G+GRTG +AH+H G+ PD
Sbjct: 187 VFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPD 246
Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369
++TLAK L GGLPIGA L A + G HGSTF G+P+ C AA+AVLD I++ L
Sbjct: 247 VVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLE 306
Query: 370 SVSKKGHYFKETLKQKLA--RNPHVKDVRGLGLIIGIEFDVS-ATPVVDACRDSGLLVLT 426
+ + G E L+ + +P V VRG GL++GI A V A R++G LV
Sbjct: 307 NAERLG----EQLRAGIEALGHPLVDHVRGRGLLLGIVLTAPVAKAVEAAAREAGFLV-N 361
Query: 427 AGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
A +V+RL PPLII++ ++D V L L
Sbjct: 362 AVAPDVIRLAPPLIITDAQVDAFVAALPAIL 392
|
Length = 398 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 400 bits (1029), Expect = e-137
Identities = 171/383 (44%), Positives = 244/383 (63%), Gaps = 13/383 (3%)
Query: 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN 135
TY R P+ + GKG K+ D G+ YLD +SGIAV LGH KAV +Q + + HVSN
Sbjct: 7 TYGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSN 66
Query: 136 MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF-QRHSNPDSKEPATEFV 194
++ + Q E+A L S D VFF N+G EANEAA+K ARK + + V
Sbjct: 67 LFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKS----------KIV 116
Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254
+F SFHGRT G ++ T +E + F P++PG V + +I+A ++++ + AAV +E
Sbjct: 117 TFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE-EVAAVMLEV 175
Query: 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA 314
+QGEGG+ A FLQ ++ C GALL+ DEVQ G+GRTG L+A+E +G+ PDI+T+A
Sbjct: 176 VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVA 235
Query: 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKK 374
K L G+P+GA + +++ +A G HGSTF G+PL AA VL I P+FL V +K
Sbjct: 236 KGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEK 295
Query: 375 GHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVR 434
G YF + L+++L VK++RG GL+IGIE PV++ R+ GLLVL+AG NV+R
Sbjct: 296 GEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEEVAPVIEQLREEGLLVLSAGP-NVIR 354
Query: 435 LVPPLIISEQELDQAVEILCKTL 457
L+PPL+++++ELDQAV +L K L
Sbjct: 355 LLPPLVVTKEELDQAVYLLKKVL 377
|
Length = 377 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 393 bits (1012), Expect = e-134
Identities = 175/457 (38%), Positives = 246/457 (53%), Gaps = 50/457 (10%)
Query: 45 VEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRA--PVVLASGKGCKLYDAEGREYLD 102
+ + G E++E ++ L +Y R P+V+ +G LYD +G EYLD
Sbjct: 1 QSLPEEPDIVTEAPGPKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLD 60
Query: 103 LSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVAC---SFADRV 158
SGIAV LGH ++AV Q L H Y P +ELA++L A S +V
Sbjct: 61 FLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKV 120
Query: 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYR 217
FF N+G EA EAAIK AR + ++F +FHGRT+GAL+LT SK Y+
Sbjct: 121 FFGNSGAEAVEAAIKIARAYTGRPG---------VIAFDGAFHGRTLGALSLTGSKPPYK 171
Query: 218 SPFEPVMPGVNFVEYGN-----------------IEATRKLI-----QPGKTAAVFVEPI 255
+ F P+ PGV V Y N +E + + P + AA+ +EPI
Sbjct: 172 AGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPI 231
Query: 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315
QGEGGI K FL+ LR C + G LL+ DEVQ G GRTG ++A EH+G+ PDI+TLAK
Sbjct: 232 QGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAK 291
Query: 316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKG 375
L GGLP+ A + ++ G HG TF G+P+ C AA+AVLD I L ++ G
Sbjct: 292 SLGGGLPLSAVVGRAEIMDWPPGG-HGGTFGGNPVACAAALAVLDVIEEENLLERAAELG 350
Query: 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------ATPVVDACRDSGLLVL 425
Y ++ L++ ++P + DVRGLGL+IG+E A +V + GLL+L
Sbjct: 351 EYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLL 410
Query: 426 TAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461
T G GNV+R++PPL IS++ELD+ ++IL + L
Sbjct: 411 TCGPHGNVLRILPPLTISDEELDEGLDILEEALKEAL 447
|
Length = 447 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 387 bits (996), Expect = e-132
Identities = 164/393 (41%), Positives = 241/393 (61%), Gaps = 13/393 (3%)
Query: 71 KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
+++V Y A + G+G +++D +G+EY+D + GIAV ALGH +KA+ +Q L
Sbjct: 13 EVMVPNYAPAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKL 72
Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK--FQRHSNPDSKE 188
H+SN++ + P + LAK+L+ +FA+RVFF+N+G EANEAA K AR+ RH P+
Sbjct: 73 WHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHG-PEK-- 129
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
TE ++F NSFHGRT+ +++ + Y F P + V + ++ A + +I T
Sbjct: 130 --TEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDD-HTC 186
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
AV VEPIQGEGG+ AT EFLQ LR+ CD ALL+FDEVQ G+GRTG L+A+ HYG+ P
Sbjct: 187 AVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTP 246
Query: 309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368
DI+T AK L GG PIGA L T ++AS G HGST+ G+PL C A AV D I+ P L
Sbjct: 247 DILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVL 306
Query: 369 ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE----FDVSATPVVDACRDSGLLV 424
V + F + L++ + ++RG+GL+IG E + A ++A + G++V
Sbjct: 307 EGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMV 366
Query: 425 LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
L AG +V+R P L+I E ++D+ + K +
Sbjct: 367 LVAGP-DVLRFAPSLVIEEADIDEGLARFEKAV 398
|
Length = 403 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 378 bits (973), Expect = e-129
Identities = 148/396 (37%), Positives = 227/396 (57%), Gaps = 13/396 (3%)
Query: 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN 135
Y+ PVVL GKG ++D EG++Y D S + GH + A+++QA LT S
Sbjct: 9 NYHPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSR 68
Query: 136 MYYSIPQIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARK--FQRHSNPDSKEPATE 192
+Y+ + LA++ + F D+V N+G EA E A+KFARK ++ P+++ +
Sbjct: 69 AFYN-DVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQ---AK 124
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
+ +F GRT+GA + ++ + F P +PG V+Y ++EA KL+Q AA V
Sbjct: 125 IIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIV 184
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
EPIQGE G+ +L+ + + C LL+ DE+Q GLGRTG L AH+H G+ PDI+
Sbjct: 185 EPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVL 244
Query: 313 LAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371
L K L+GGL PI A L + V I G+HGST+ G+PL C A+ L+ + +
Sbjct: 245 LGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENA 304
Query: 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD----VSATPVVDACRDSGLLVLTA 427
+ G F++ LK+ L ++P VK++RG GL+ I FD V+A + +++GLL
Sbjct: 305 QRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPT 364
Query: 428 GKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463
N++R PPL+I++++LDQA+EI+ K L DSN
Sbjct: 365 H-DNIIRFAPPLVITKEQLDQALEIIKKVLKSFDSN 399
|
Length = 400 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 375 bits (964), Expect = e-127
Identities = 171/436 (39%), Positives = 243/436 (55%), Gaps = 49/436 (11%)
Query: 59 GRNNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
G +E++E ++K L + R P+V+ G+G + D +G YLD ++GIAV +GH
Sbjct: 14 GPKAREIIERDEKYLAQSTRRWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHP 73
Query: 118 DWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVA---CSFADRVFFSNTGTEANEAAIK 173
+KAV +QA H S +Y P +ELA+RLV F +VFF+N+GTE+NEAAIK
Sbjct: 74 KVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIK 133
Query: 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEY 232
AR ++F +FHGRT G+L+LT SK R F P+MPGV V Y
Sbjct: 134 IARYHTGRK---------YIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPY 184
Query: 233 GN--------------IEAT---------RKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269
N A +KL+ P + AA+ VEPIQGEGG K F
Sbjct: 185 PNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFF 244
Query: 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT 329
+ LR D G LL+ DEVQ G+GRTG ++A EH+G+ PDI+TLAK +AGGLP+GA +
Sbjct: 245 KELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGR 304
Query: 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARN 389
++ G H +TF G+P+ AA+A L+++ L + K G Y ++ LK+ +
Sbjct: 305 AELMFLPP-GSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKY 362
Query: 390 PHVKDVRGLGLIIGIEF-DVSATP-------VVDACRDSGLLVLTAGKGNVVRLVPPLII 441
+ DVRGLGL+IG+E P V+ GLL+L AGK + +R++PPLII
Sbjct: 363 EFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGK-SAIRIIPPLII 421
Query: 442 SEQELDQAVEILCKTL 457
+E+E D +EIL + +
Sbjct: 422 TEEEADIGLEILEEAI 437
|
Length = 441 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 373 bits (959), Expect = e-126
Identities = 167/382 (43%), Positives = 241/382 (63%), Gaps = 13/382 (3%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
+V Y AP + G+G +++D +G+EY+D + GIAVNALGH + +KA+++QA+ L H
Sbjct: 10 MVPNYAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH 69
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF--QRHSNPDSKEPA 190
+ N Y + P + LAK+LV +FAD+VFF N+G EANEAA+K AR++ +H S
Sbjct: 70 IGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKS---- 125
Query: 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250
E V+F NSFHGRT+ +++ + Y F P+ G+ Y ++ A + LI KT AV
Sbjct: 126 -EIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISD-KTCAV 183
Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
VEPIQGEGG+ A FL+ LR+ CD ALL+FDEVQ G+GRTG L+A+ HYG+ PDI
Sbjct: 184 IVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDI 243
Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
+T AK L GG PIGA L T ++A+ + G HG+T+ G+PL C A VLD ++ P LA
Sbjct: 244 LTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAG 303
Query: 371 VSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----ATPVVDACRDSGLLVLT 426
V ++ F + L++ AR ++RG GL+IG + A V+A + G++ L
Sbjct: 304 VKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALI 363
Query: 427 AGKGNVVRLVPPLIISEQELDQ 448
AG NVVR P L+IS+ ++D+
Sbjct: 364 AG-PNVVRFAPSLVISDDDIDE 384
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 362 bits (930), Expect = e-122
Identities = 167/381 (43%), Positives = 229/381 (60%), Gaps = 9/381 (2%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
+V Y AP + G+G +L+D +G+EY+D + GIAVNALGH +A+ +QA+ H
Sbjct: 14 MVPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWH 73
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
N Y + P + LAK+L+ +FADRVFF N+G EANEAA+K ARK+ K +
Sbjct: 74 TGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHK---SG 130
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
V+F N+FHGRT+ ++ + Y F P+ P + Y ++ + LI +T AV V
Sbjct: 131 IVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD-QTCAVIV 189
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
EPIQGEGG+ A K FLQ LR+ CD ALL+FDEVQ G+GRTG L+A+ HYG+ PD++T
Sbjct: 190 EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLT 249
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVS 372
AK L GG PIGA L TEK AS + G HG+T+ G+PL A VL+ I+ P L V
Sbjct: 250 TAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVK 309
Query: 373 KKGHYFKETLKQKLARNPHVKDVRGLGLIIGI----EFDVSATPVVDACRDSGLLVLTAG 428
++ +F E L AR ++RGLGL+IG E+ A + +G++VL AG
Sbjct: 310 QRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAG 369
Query: 429 KGNVVRLVPPLIISEQELDQA 449
NVVR P L ISE+E+
Sbjct: 370 -PNVVRFAPALNISEEEITTG 389
|
Length = 406 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 350 bits (899), Expect = e-118
Identities = 153/336 (45%), Positives = 200/336 (59%), Gaps = 20/336 (5%)
Query: 87 GKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIEL 145
KG LYD +GR YLD SGIAV LGH ++AV +QA+ LTH S + + P ++L
Sbjct: 5 AKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQL 64
Query: 146 AKRLVA--CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGR 203
A++L DRVFF N+G+EANE AIK AR++ + K T+ ++F+ FHGR
Sbjct: 65 AEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGK---TKIIAFSGGFHGR 121
Query: 204 TMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR-------------KLIQPGKTAAV 250
T+GAL++T Y+ F P +PGV F+ Y ++EA K + AAV
Sbjct: 122 TLGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLIKAVHDDNIAAV 181
Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
VEPIQGEGG+ FL LR+ C G LL+ DEVQ G GRTG L+A EHYG+ PDI
Sbjct: 182 IVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPDI 241
Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
MTLAK L GGLP+ A L T ++ A + G HG TF G+PL C AA+AVLD I + L +
Sbjct: 242 MTLAKALTGGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQN 301
Query: 371 VSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406
+KG Y ++ L L P + DVRG GL+I IE
Sbjct: 302 AQEKGDYLRKGLLA-LQDKPVIGDVRGKGLMIAIEI 336
|
Length = 338 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 345 bits (886), Expect = e-115
Identities = 154/410 (37%), Positives = 232/410 (56%), Gaps = 43/410 (10%)
Query: 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSI 140
+ + G+GC Y +G+EYLD +SGIAV +GH ++A+ +QA+ L H S + Y
Sbjct: 27 LPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYE 86
Query: 141 PQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
++LA+ L + D FFSN+G EA E A+K A+ +K P +SFT
Sbjct: 87 SILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHV-------TKRPYI--ISFTG 137
Query: 199 SFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGN--------------IEATR---- 239
FHGRT+GAL++T SK YR ++P++ V Y +E R
Sbjct: 138 CFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLES 197
Query: 240 ---KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ P + AAV +EP+ GEGG K FL+ LR+ CD G LL+FDEVQ G GRTG
Sbjct: 198 LFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG 257
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
+A + +G+ PDIMT+AK +A GLP+ A + ++++ G HG+TF G+P+ C AA+
Sbjct: 258 EWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAAL 317
Query: 357 AVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF-DVSATP--- 412
A L+ I L + ++ G Y E L+ ++P + DVRG+GL+IGIE D P
Sbjct: 318 ATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGD 377
Query: 413 ----VVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTL 457
++D C + GLL G GNV+R++PPL ++++E+D+ ++IL + L
Sbjct: 378 AVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEAL 427
|
Length = 433 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 339 bits (871), Expect = e-114
Identities = 159/381 (41%), Positives = 226/381 (59%), Gaps = 13/381 (3%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L Y RA + +G L D +G++YLD SSGI V LG +A+ QA ++ H
Sbjct: 4 LFQNYKRAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWH 62
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
N+Y + Q E+A++L+ FF N+G EANEAAIK ARK E
Sbjct: 63 SPNLYLNSLQEEVAQKLIG-DKDYLAFFCNSGAEANEAAIKIARKATGKQ---------E 112
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
++F NSFHGRT G+++ T ++ + F +P ++ + ++ + + L+ TAAV +
Sbjct: 113 IITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVN-KNTAAVML 171
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
E +QGE G+ A K+F++ L D C + G LL+ DEVQ G+GRTG L+A EHYGI PDI T
Sbjct: 172 ELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFT 231
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVS 372
LAK LA G+P+GA L + A YG HGSTF G+ L AA A LD + FL
Sbjct: 232 LAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQAL 291
Query: 373 KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNV 432
+ G+Y +E L++ L V VRGLG +IGIE + +V+A RD GL+VLTAG NV
Sbjct: 292 ENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTADLSQLVEAARDKGLIVLTAGT-NV 350
Query: 433 VRLVPPLIISEQELDQAVEIL 453
+RL+PPL ++++E++Q + IL
Sbjct: 351 IRLLPPLTLTKEEIEQGIAIL 371
|
Length = 375 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = e-110
Identities = 157/380 (41%), Positives = 221/380 (58%), Gaps = 12/380 (3%)
Query: 78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY 137
NR +V GKG LYD G+ YLD G AVN LGH + ++A+ QA L + S +
Sbjct: 16 NRPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAF 75
Query: 138 YSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
Y+ P +LA L S D+VFF+N+G EANE AIK ARK+ R K A E ++F
Sbjct: 76 YNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKH----KNGAYEIITFD 131
Query: 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG 257
+SFHGRT+ ++ + K + + F P +PG E +I + KLI KT AV +EP+QG
Sbjct: 132 HSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEPVQG 190
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
EGG+ AT+EF+Q LR G LL+ DEVQ G GRTG L+A+E GI PDIMTL K +
Sbjct: 191 EGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGI 250
Query: 318 AGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHY 377
GG+P+ A L +VA GD G T+ G+PL+ +AV+ ++ P FL V +G Y
Sbjct: 251 GGGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEY 309
Query: 378 FKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATP-VVDACRD---SGLLVLTAGKGNVV 433
KE L +L+ ++ RG GL+ + P +V+ RD GLL L A + N++
Sbjct: 310 LKEKL-LELSEERGLEGERGEGLLRALLLGKDIGPQIVEKARDMQPDGLL-LNAPRPNLL 367
Query: 434 RLVPPLIISEQELDQAVEIL 453
R +P L ++ +E+DQ + +L
Sbjct: 368 RFMPALNVTTEEIDQMIAML 387
|
Length = 395 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 314 bits (808), Expect = e-103
Identities = 149/425 (35%), Positives = 220/425 (51%), Gaps = 50/425 (11%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
P V+ +G L D +GR YLD SG+ GHG + +A+ Q + L HV
Sbjct: 23 PLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFG 82
Query: 137 YYS-IPQIELAKRLVA---CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-T 191
++ P IELA++L D VFF+++G+EA E A+K A ++ R +P
Sbjct: 83 GFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARG----QPQRK 138
Query: 192 EFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVE----YGN------------ 234
+F+S N +HG T+GA+++ + ++P++P V + Y
Sbjct: 139 KFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAE 198
Query: 235 -IEATRKLIQ---PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ 289
+ LI P AA VEP+ G GG+ +L+ +R+ CD G LL+ DEV
Sbjct: 199 AADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVA 258
Query: 290 CGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGS 343
G GRTG ++A EH GI PDI+ LAK L GG LP+ A L ++++ A + GD HG
Sbjct: 259 TGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGH 318
Query: 344 TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403
T++G+PL C AA+A LD + L V++ G Y + L+ LA +P V DVRGLGLI
Sbjct: 319 TYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGA 378
Query: 404 IEFDVS-ATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEI 452
IE AT V A + GLL+ G+V+ L+PPLII+ +E+D+ V+
Sbjct: 379 IELVADKATKTPFEARVGARVRAAALERGLLIRPL--GDVIYLMPPLIITREEIDELVDA 436
Query: 453 LCKTL 457
L + L
Sbjct: 437 LREAL 441
|
Length = 449 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 6e-99
Identities = 162/377 (42%), Positives = 228/377 (60%), Gaps = 12/377 (3%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
Y VVL G+G +++D +GREYLDL++GIAV LGH D D + A+ +QA L H SN+
Sbjct: 19 YRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNV 78
Query: 137 YYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSN--PDSKEPATEF 193
+YS P ++LA+ LV S FA++VF N+GTEANEAAIK RK+ D +
Sbjct: 79 FYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRV----I 134
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253
V+F SFHGRT+ A+ T++ Y+ +EP+ G +V++ ++EA + G AAV +E
Sbjct: 135 VTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLE 194
Query: 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313
PIQGEGG+ A FL +R CD ALLV DE+QCG+GRTG L+AH + PDI+TL
Sbjct: 195 PIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTL 254
Query: 314 AKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSK 373
AK L GG PIGA L KVA + +G HG+TF G+PL A L K+++P A+V++
Sbjct: 255 AKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVAR 314
Query: 374 KGHYFKETLKQKLARNPHVKDVRGLGLIIGI----EFDVSATPVVDACRDSGLLVLTAGK 429
+ + L+ A VRG GL++G A ++D + GLL+L AG
Sbjct: 315 QSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGP 374
Query: 430 GNVVRLVPPLIISEQEL 446
+V+R VP L +++ EL
Sbjct: 375 -DVLRFVPALNLTDAEL 390
|
Length = 408 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = 2e-96
Identities = 151/406 (37%), Positives = 223/406 (54%), Gaps = 18/406 (4%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADWIK 121
+E +E E K Y+ PVV + +G ++D EG+ YLD LS+ AVN GH +K
Sbjct: 2 EEAIERENKYGAHNYHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQ-GHCHPKIVK 60
Query: 122 AVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK--FQ 179
A+ +QA LT S +Y+ E A+ + D+V NTG EA E AIK ARK ++
Sbjct: 61 ALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYK 120
Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
P+++ VS +FHGRT+GA+++++ R+ F P +PG + Y N+EA
Sbjct: 121 VKGIPENQ---AIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALE 177
Query: 240 K-LIQPGKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
+ L G F VEPIQGE G+ +L+ +R+ C LL+ DE+Q GLGRTG
Sbjct: 178 EALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK 237
Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
L +H + PDI+ L K L+GG P+ A L + V I G+HGST+ G+PL C A+
Sbjct: 238 LLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAV 297
Query: 357 AVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPV--V 414
A L+ + + K G F++ LK+ P + +VRG GL+ I D S T
Sbjct: 298 AALEVLEEEKLAENAEKLGEIFRDQLKK--LPKPIITEVRGRGLLNAIVIDESKTGRTAW 355
Query: 415 DAC---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
D C ++ GLL GN++RL PPL+I+E++LD+ +EI+ K +
Sbjct: 356 DLCLKLKEKGLLAKPT-HGNIIRLAPPLVITEEQLDEGLEIIKKVI 400
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 5e-96
Identities = 141/414 (34%), Positives = 219/414 (52%), Gaps = 48/414 (11%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
P+ + +G LYD +GREY+D S VN GH + A+ +Q + L HV M+ +
Sbjct: 14 PLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDKLEHV--MFGGL 71
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IELA+RLV + ++VFFS++G+ A E A+K A ++ ++ K T F++
Sbjct: 72 THEPAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGK---TRFLA 128
Query: 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN--------------IEATRKL 241
F N +HG T GA+++ + + FEP++ V F+ + A L
Sbjct: 129 FRNGYHGDTFGAMSVGDVGGFHALFEPLLFEVVFIPAPPCYRCWDPDDCEAECLAALEAL 188
Query: 242 IQ--PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
++ + AA VEP+ QG GG+ E+L+ LR+ CD+ G LL+ DE+ G GRTG L
Sbjct: 189 LEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGKL 248
Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGSTFAGSPL 350
+A EH G+ PDI+ L+K L GG LP+ A L T+++ A Y D HG T+ G+PL
Sbjct: 249 FACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAF-YSDDEGKAFMHGHTYTGNPL 307
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSA 410
C AA+A LD + +L V++ + L L +P V DVR LG I +E
Sbjct: 308 ACAAALASLDLLEEEDWLEQVARIEAQLRAGL-APLRDHPGVADVRVLGAIGAVELVRDV 366
Query: 411 TP-----VVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
P + + G+L+ L GNV+ L+PP II+++EL++ + + +
Sbjct: 367 EPYIGAKIQQFFLERGVLLRPL----GNVIYLMPPYIITDEELEKLTAAIKEAI 416
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 6e-90
Identities = 146/393 (37%), Positives = 216/393 (54%), Gaps = 12/393 (3%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADWIK 121
++++E Y+ P+V++ +G + D EG Y+D LS+ AVN GH I+
Sbjct: 5 EKIIELTNHYGAHNYHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQ-GHRHPKIIQ 63
Query: 122 AVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK--FQ 179
A+ DQA+ +T S ++S +++ + D V NTG EA E AIK AR+ +
Sbjct: 64 ALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYD 123
Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
+K E ++ +FHGRTM A++L+S+E Y+ F P++PG+ + YG++EA +
Sbjct: 124 VKGVEPNK---AEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALK 180
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
I P TAA VEPIQGE GI + FL+ R+ C + L + DE+Q GLGRTG L+
Sbjct: 181 AAITP-NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF 239
Query: 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAV 358
A + + PD+ L K L GG PI + G HGSTF G+PL C +IA
Sbjct: 240 ACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAA 299
Query: 359 LDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACR 418
L+ + + G YFKE LK+ NP +K+VRG GL IG+E + A P +A +
Sbjct: 300 LEVLEEEKLPERSLELGEYFKEQLKE--IDNPMIKEVRGRGLFIGVELNEPARPYCEALK 357
Query: 419 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVE 451
+ GLL + V+R PPL+I+++ELD A E
Sbjct: 358 EEGLLCKETHE-TVIRFAPPLVITKEELDWAFE 389
|
Length = 396 |
| >gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 268 bits (686), Expect = 3e-86
Identities = 152/371 (40%), Positives = 212/371 (57%), Gaps = 25/371 (6%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
R + L G+G ++D++GR YLDL +GI VN LGH +W++ + +Q L M+
Sbjct: 5 RKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFE 64
Query: 139 SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
+ E+ + L + V+ N+GTEA EAA+KFAR + E ++ TN
Sbjct: 65 HEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRK---------EIIAMTN 115
Query: 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGE 258
+FHGRTMGAL+ T K YR FEP++PG + + ++EA ++ I +TAAV EPIQGE
Sbjct: 116 AFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITK-ETAAVIFEPIQGE 174
Query: 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA 318
GGI A +EF++ LRD +D GALL+ DEVQ GL RTG A EHY + PDI+T+ K +
Sbjct: 175 GGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIG 233
Query: 319 GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378
G+P+ L V G HGSTF G+PL C A+AV +I L V K G F
Sbjct: 234 NGVPVSLTLTNFDVER----GKHGSTFGGNPLACK-AVAVTLRILRRERL--VEKAGEKF 286
Query: 379 KETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPP 438
E + V RG GL+IGI V+ ++ G LV TAG+ V+RL+PP
Sbjct: 287 IEI------KGERVVTTRGRGLMIGIVLKKPVGKYVEELQNRGYLVHTAGQ-RVIRLLPP 339
Query: 439 LIISEQELDQA 449
LIIS+ +++A
Sbjct: 340 LIISKDTMEEA 350
|
Length = 364 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 1e-84
Identities = 142/391 (36%), Positives = 215/391 (54%), Gaps = 29/391 (7%)
Query: 85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQ-ANVLTHVSNMYYSIPQI 143
A G L D +G+E++D G + +GH + + AV +Q A H + + +
Sbjct: 70 AGGLNT-LVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPL-RA 127
Query: 144 ELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFH 201
LAK L A + FF N+GTE+ EAA+K A+ +Q S F++ + +FH
Sbjct: 128 MLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQ------SPRGKFTFIATSGAFH 181
Query: 202 GRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK-----TAAVFVEPIQ 256
G+++GAL+ T+K +R PF P++PG V +GNIEA R + K AAV +EPIQ
Sbjct: 182 GKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQ 241
Query: 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP 316
GEGG+ + +L +R CD+ GALL+ DEVQ G+GRTG ++A EH + PDI+ LAK
Sbjct: 242 GEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKA 301
Query: 317 LAGG-LPIGAALVTEKVASAI--NYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSK 373
L GG +PIGA + TE+V S + N H +TF G+PL C AA+A ++ + A +
Sbjct: 302 LGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQ 361
Query: 374 KGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDVSATPVVDACRDSGLL---VLTAGK 429
KG Y + +Q P V++ RG G+++ IEF + A S + VL AG
Sbjct: 362 KGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFA---SEMFRQRVLVAGT 418
Query: 430 GN---VVRLVPPLIISEQELDQAVEILCKTL 457
N +R+ PPL ++ ++ +Q ++ K L
Sbjct: 419 LNNAKTIRIEPPLTLTIEQCEQVLKAARKAL 449
|
Length = 459 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 255 bits (655), Expect = 1e-80
Identities = 149/429 (34%), Positives = 221/429 (51%), Gaps = 61/429 (14%)
Query: 64 EVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
E +E+E V +Y R+ PVV KG LYD +G+EY+D +G GH + +A
Sbjct: 8 ERLESE----VRSYCRSFPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQA 63
Query: 123 VVD--QANVLTHVSNMYYSIPQIELAKRLVACSFADRV-----------FFSNTGTEANE 169
++D Q + +TH +M+ + AKR +F + + F TGT A E
Sbjct: 64 LIDYLQRDGITHGLDMHTT------AKREFLETFEETILKPRGLDYKVQFTGPTGTNAVE 117
Query: 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF 229
AA+K ARK +N V+FTN FHG T+G+LA+T H R + V
Sbjct: 118 AALKLARKVTGRTN---------IVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTR 168
Query: 230 VEYGN--------IEATRKLIQ-PG----KTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276
+ Y + KL++ AAV VE +QGEGGI A+ E+LQ L C
Sbjct: 169 MPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLC 228
Query: 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEK---- 331
LL+ D++Q G GRTG ++ E GI PDI+TL+K ++G GLP+ ALV K
Sbjct: 229 RKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYGLPM--ALVLIKPELD 286
Query: 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKI-SNPAFLASVSKKGHYFKETLKQKLARNP 390
V G+H TF G+ L A A L++ S+ AF V KG +E L++ A+ P
Sbjct: 287 VWKP---GEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYP 343
Query: 391 -HVKDVRGLGLIIGIEFDVS--ATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQEL 446
+VRG G++ GI+F A + ++GL++ T+G + VV+L+PPL I E+EL
Sbjct: 344 GLGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEEL 403
Query: 447 DQAVEILCK 455
++ ++IL +
Sbjct: 404 EEGLDILEE 412
|
Length = 425 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 2e-80
Identities = 130/443 (29%), Positives = 222/443 (50%), Gaps = 50/443 (11%)
Query: 60 RNNKEVMEAEKKLLV--GTYNRAPVVLASGKGCKLYDAEGREYLDL-SSGIAVNALGHGD 116
++++ ++ G P+V+ G G L D +G+ Y+DL +S + N +GH
Sbjct: 2 SKAHQLIQEDEHYFAKSGRIKYYPLVIDHGYGATLTDVDGKTYIDLLASASSQN-VGHAP 60
Query: 117 ADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVACS---FADRVFFSNTGTEANEAAI 172
++A+ QA+ H + Y Y P + LAK+L + F RV F +G++AN+ I
Sbjct: 61 PRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGII 120
Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGV---- 227
KFAR + +SFTN++HG T G+L+++ + R + P++PG
Sbjct: 121 KFARAYTGRPY---------IISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIP 171
Query: 228 --------------NFVE-YGN--IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270
NFVE Y E K + + A + +E IQG+GG+ + +
Sbjct: 172 FPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFE 231
Query: 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTE 330
L C + G L D++Q GLGRTG + H+ I PD+M+ K LAGG+P+ A + +
Sbjct: 232 ALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRK 291
Query: 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390
++ ++ H T +P+ C AA+A +D I + + L ++KG Y ++ Q +++
Sbjct: 292 EIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYN 351
Query: 391 HVKDVRGLGLIIGIEF----------DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLI 440
V DVRG GL IGI+ + +A + + C + G +V+ A GNV+R PPL+
Sbjct: 352 FVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHG-VVIIAVAGNVLRFQPPLV 410
Query: 441 ISEQELDQAVEILCKTLPVLDSN 463
I+ ++LD A+ + + L++
Sbjct: 411 ITYEQLDTALNTIEQAFTALEAG 433
|
Length = 445 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 1e-79
Identities = 133/410 (32%), Positives = 222/410 (54%), Gaps = 48/410 (11%)
Query: 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-Y 138
P+V + K++D EG EY+D S AV +GH + +KA+ +Q + L H + +Y +
Sbjct: 23 YPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGF 82
Query: 139 SIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
+ + LA++L+ + D +V F +G++AN+ AIKFAR + + + +S+
Sbjct: 83 PVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKR---------RKILSY 133
Query: 197 TNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK--------- 246
S++G T GA++LT + R+ + V+++ Y + +PG
Sbjct: 134 LRSYYGSTYGAMSLTGLDFPVRALVGEL-SDVHYIPYPDCYRCPFGKEPGSCKMECVEYI 192
Query: 247 ------------TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
AA+F EPIQG+ G+ +++ + L+ D+ G LLV DEVQ GLGR
Sbjct: 193 KEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGR 252
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNA 354
TG +A EH+G+ PDI+TL KPL GGLPI A + ++ ++ H T +G+P+ A
Sbjct: 253 TGKWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAA 312
Query: 355 AIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE--------- 405
A+AV+++I L K G+Y K+ L++ ++ + DVRG+GL+IG++
Sbjct: 313 ALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKE 372
Query: 406 --FDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453
++ A VV + GL+V T GNV+R+ PPL I ++ LD+ ++IL
Sbjct: 373 RAYE-EAAKVVWRAWELGLIV-TFFSGNVLRIQPPLTIEKEVLDEGLDIL 420
|
Length = 443 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 4e-79
Identities = 147/428 (34%), Positives = 221/428 (51%), Gaps = 18/428 (4%)
Query: 50 AARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIA 108
GSA L ++ ++E E+K Y+ PVV + KG +++D EG++YLD LS+ A
Sbjct: 27 LPEGSAPSLSDSSAHLIELEEKYSAHNYHPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSA 86
Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEAN 168
VN GH IKA+ +QA LT S +Y+ E A+ L + D V NTG E
Sbjct: 87 VNQ-GHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGV 145
Query: 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN 228
E AIK ARK+ K A VS FHGRT+ A++++ F P++PG
Sbjct: 146 ETAIKLARKWGYEKKGIPKNEAI-IVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHL 204
Query: 229 FVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286
V++G+++A K+ + + AA EPIQGE G+ +L+ +R+ C L++ D
Sbjct: 205 KVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIAD 264
Query: 287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTF 345
E+Q GL RTG + A + + PD++ L K L GG +P+ A L + V I G+HGSTF
Sbjct: 265 EIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTF 324
Query: 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGI 404
G+PL A+A L + + +K G ++ L++ + P +K+VRG GL+ +
Sbjct: 325 GGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAV 384
Query: 405 EFD------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV----EILC 454
+ VSA V ++ GLL ++RL PPL ISE EL + ++L
Sbjct: 385 VLNSPKLGPVSAYDVCLKLKERGLLA-KPTHDTIIRLAPPLSISEDELQECSKALSDVLE 443
Query: 455 KTLPVLDS 462
LP L S
Sbjct: 444 HDLPKLQS 451
|
Length = 474 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 250 bits (639), Expect = 1e-78
Identities = 142/418 (33%), Positives = 199/418 (47%), Gaps = 44/418 (10%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
G PV A +G L D +G +D +SGIAV +GH + AV Q TH
Sbjct: 10 GVGVTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTC 69
Query: 135 NMYYSIPQ-IELAKRLVAC---SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
M + LA++L S + F N+G EA E A+K AR + + P
Sbjct: 70 FMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSY-------TGRPG 122
Query: 191 TEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEY----------------G 233
V+F + FHGRT +ALT+K Y+S F P P V G
Sbjct: 123 V--VAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDG 180
Query: 234 NIEATRKL----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ 289
+ A R + + AA+ +EP+QGEGG K F+ L D C + G + + DEVQ
Sbjct: 181 ELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQ 240
Query: 290 CGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSP 349
G RTG ++A EH G PD++T AK LA GLP+ ++ A G G T+AG+P
Sbjct: 241 TGFARTGAMFACEHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNP 300
Query: 350 LVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS 409
L C AA+AVL I + + + G + L A +P + DVRGLG +I +E
Sbjct: 301 LACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDP 360
Query: 410 ATPVVDACR---------DSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTL 457
T DA +GLL+LT G GN++R +PPL I ++ L + ++ILC L
Sbjct: 361 GTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAIL 418
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (637), Expect = 6e-78
Identities = 130/414 (31%), Positives = 198/414 (47%), Gaps = 49/414 (11%)
Query: 78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIA---VNALGHGDADWIKAVVDQANVLTHVS 134
+ P+ + +G LY A+GRE +D I+ V GH +A+ +Q + L HV
Sbjct: 22 HPPPIPIVRAEGAYLYLADGRELID---AISSWWVATHGHNHPYIDQAIREQLDRLDHV- 77
Query: 135 NMYYSI---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
++ P LA+RLVA + D VFFS++G+ A E A+K A ++ R+ +
Sbjct: 78 -IFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRG---EPG 133
Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV-------EYGNIEATRKLI 242
+ F+S +HG T+G +++ + + + P++ E ++A L+
Sbjct: 134 RSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALL 193
Query: 243 QP--GKTAAVFVEP-IQGEGG--IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
+ G+ AA VEP +QG GG Y +L LR CD G LL+FDE+ G GRTG
Sbjct: 194 EKHAGEIAAFIVEPLVQGAGGMLFYDP--RYLAELRRICDRHGVLLIFDEIATGFGRTGT 251
Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGSPL 350
L+A E G+ PDIM L+K L GG LP+ A L T ++ A D H ++ +PL
Sbjct: 252 LFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPL 311
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSA 410
C AA A LD + L V+ E L + P V DVR LG I +E D
Sbjct: 312 ACAAANASLDLFEDEPVLERVAALSAGLAEGL-EPFRDLPGVADVRVLGAIGAVELDRPV 370
Query: 411 TPVV-----DACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+ G+L+ L GN + L+PP II+ +ELD+ + + +
Sbjct: 371 LERDGPALRAFALERGVLLRPL----GNTIYLMPPYIITAEELDRITDAIVEVA 420
|
Length = 423 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 2e-77
Identities = 145/430 (33%), Positives = 210/430 (48%), Gaps = 68/430 (15%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNMYY 138
V +G+G L DA G+ YLD S G AV+ LGH I A+ Q + L H S +
Sbjct: 13 LPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS-FFT 71
Query: 139 SIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKF-------QRHSNPDSKEP 189
+ P LA RLVA + A + V+F + G+EA EAA+K AR++ QR
Sbjct: 72 TEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRR-------- 123
Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------EYG 233
F++ S+HG T+GALA+ R PF P++ + V YG
Sbjct: 124 --HFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYG 181
Query: 234 -----NIEATRKLIQPGKTAAVFVEPIQGE-GGIYSATKEFLQFLRDACDDAGALLVFDE 287
+EA + P AA E + G G + + +R+ CD G LL+ DE
Sbjct: 182 QRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDE 241
Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG----DHG 342
V CG+GRTG L+A E G+ PD++T+AK L G PIGA L ++++ AI G HG
Sbjct: 242 VMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHG 301
Query: 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402
T+ G C AA+AV I+ LA+V +G + L+++L ++PHV D+RG GL +
Sbjct: 302 HTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFV 361
Query: 403 GIEF---DVSATPVVDACR----------DSGLLVLTAG------KGNVVRLVPPLIISE 443
G+E + P A + GL+V G +G+ V L PP II+
Sbjct: 362 GVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITA 421
Query: 444 QELDQAVEIL 453
++D+ VE L
Sbjct: 422 AQIDEIVERL 431
|
Length = 443 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 2e-77
Identities = 146/427 (34%), Positives = 212/427 (49%), Gaps = 53/427 (12%)
Query: 75 GTYNRAPV-VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV 133
G Y APV V+ G+GC ++D G+ YLD +G+ V +GHG A+ +A QA L
Sbjct: 28 GAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFF 87
Query: 134 SNMYYS-IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARK-FQRHSNPDSKEP 189
Y+ P IELA+RL A + D RVFF+ G+EA E+A K A++ F+ P
Sbjct: 88 PLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGK--- 144
Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NF---VEYGN------ 234
+ +S ++HG T GALA+T +++PFEP++PG NF E G+
Sbjct: 145 -HKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFG 203
Query: 235 ---IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV 288
+ + I+ P AAVF+EP+Q GG + + + +R+ CD LLV DEV
Sbjct: 204 RWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEV 263
Query: 289 QCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD----HGS 343
C GR G ++ E +G PDI+T AK + G P+GA + ++++ G HG
Sbjct: 264 ICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGY 323
Query: 344 TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403
TF G P+ A+A LD L V F+ TL +KL P V DVRG G G
Sbjct: 324 TFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATL-EKLLDLPIVGDVRGDGYFYG 382
Query: 404 IE----------FD------VSATPVVDACRDSGLLVLTAGKGN-VVRLVPPLIISEQEL 446
IE F + + A ++GL +G+ VV+L PPLI ++E
Sbjct: 383 IELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEF 442
Query: 447 DQAVEIL 453
D+ +IL
Sbjct: 443 DEIEQIL 449
|
Length = 460 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 2e-76
Identities = 142/403 (35%), Positives = 204/403 (50%), Gaps = 39/403 (9%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
P+ + C+++D EGREYLD + GIAV GH + AV Q L+H +
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY 83
Query: 141 -PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
P +EL +++ V FA + TG+EA E A+K AR + S ++F
Sbjct: 84 EPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSG---------VIAF 134
Query: 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF-VEY-------------GNIEATRKL- 241
T ++HGRT LALT K + S +MPG + Y +IE K
Sbjct: 135 TGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKND 194
Query: 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301
P AA+ +EP+QGEGG Y+A+ F+Q LR CD+ G +L+ DEVQ G GRTG L+A
Sbjct: 195 AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAM 254
Query: 302 EHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
E G+ D+ T AK +AGG P+ +V AI G G T+AG+P+ C AA+AVL
Sbjct: 255 EQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKV 314
Query: 362 ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF---DVSATPVVDAC- 417
L + G K+ L ++P + DVRGLG +I IE + P
Sbjct: 315 FEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTA 374
Query: 418 ------RDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEIL 453
RD GL++L+ G NV+R++ PL I + ++ Q +EI+
Sbjct: 375 QIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417
|
Length = 425 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 7e-76
Identities = 136/396 (34%), Positives = 198/396 (50%), Gaps = 42/396 (10%)
Query: 89 GCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ---IEL 145
+++D EGR Y+D ++GIAV GH I AV Q + TH + +P + L
Sbjct: 31 NAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQV--VPYENYVRL 88
Query: 146 AKRL---VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHG 202
A+RL V FA + F TG EA E A+K AR S ++F FHG
Sbjct: 89 AERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSA---------VIAFGGGFHG 139
Query: 203 RTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN----------IEATRKL----IQPGKT 247
RT ++LT K Y+ F +MP V V + + A KL + P +
Sbjct: 140 RTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRV 199
Query: 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF 307
AA+ +EP+QGEGG Y A F++ LR+ CD G LL+ DEVQ G RTG L+A EH+ +
Sbjct: 200 AAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVA 259
Query: 308 PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367
D+ T+AK LAGG P+ A ++ A G G T+ G+PL AA AVLD I
Sbjct: 260 ADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDL 319
Query: 368 LASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC---------R 418
++ G+ K+ L P + D+RG G + +EF+ + + + A
Sbjct: 320 CERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKAL 379
Query: 419 DSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEIL 453
+ GL++LT G GNV+R + P+ I + +A++IL
Sbjct: 380 EKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDIL 415
|
Length = 425 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 4e-75
Identities = 138/404 (34%), Positives = 211/404 (52%), Gaps = 15/404 (3%)
Query: 62 NKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADWI 120
+++++ E++L Y VVL G+G ++D +G YLD LS+ AVN GH +
Sbjct: 5 SEDLIATEQRLGAHNYKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQ-GHCHPKIL 63
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK--F 178
A+V+QA LT S + + L + L A + + +V N+G EA E AIK RK +
Sbjct: 64 AAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGY 123
Query: 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT 238
+ P+ + E + ++FHGRT+ + ++ R F P PG V +G+ EA
Sbjct: 124 EVKGVPEGQ---AEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEAL 180
Query: 239 RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
I P T A VEPIQGE G+ + +R+ C L+ DE+Q GLGRTG L
Sbjct: 181 EAAITP-NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKL 239
Query: 299 WAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA 357
A EH GI D+ + K L+GG P+ A L +V + G HGSTF G+PL C A A
Sbjct: 240 LAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARA 299
Query: 358 VLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC 417
L ++ + + ++ G YF E L+ R+ V++VRG GL++ +E + A C
Sbjct: 300 ALKVLTEEGMIENAAEMGAYFLEGLRS--IRSNIVREVRGRGLMLAVELEPEAGGARQYC 357
Query: 418 ---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458
++ GLL + +RL PPL+I+ +++D A+E + K L
Sbjct: 358 EALKERGLLAKDT-HDHTIRLAPPLVITREQVDWALEQIAKVLA 400
|
Length = 401 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 2e-74
Identities = 132/423 (31%), Positives = 214/423 (50%), Gaps = 49/423 (11%)
Query: 80 APVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
A +V+A +G + D +G YLD SG+ VN +G+G + +A +Q L++
Sbjct: 29 ATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVN-VGYGRKELAEAAYEQLKTLSYFPLTQS 87
Query: 139 SIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
P I+LA++L + +FFSN+G+EANE A K AR++ + +F+S
Sbjct: 88 HEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHR---YKFISRY 144
Query: 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV--------------EYGNIEATRKLIQ 243
++HG +MGALA T + + +EP+ PG V + ++E +++ +
Sbjct: 145 RAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDR 204
Query: 244 ------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
AAV +EPI GG+ +++++ +++ C GALL+ DEV CG GRTG
Sbjct: 205 VMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264
Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGSPL 350
+ +YG+ PDI+T+AK + LP+ A V +++ A H +TF G+P
Sbjct: 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPA 324
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF---- 406
C A+ L+ + N + ++ G E LK++L +P V D+RG GL++GIE
Sbjct: 325 ACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDK 384
Query: 407 ------DVS-ATPVVDACRDSGLLV-----LTAGKGNVVRLVPPLIISEQELDQAVEILC 454
D VV AC++ GL++ AG NV+ L PPL+IS +E+ V L
Sbjct: 385 ETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLK 444
Query: 455 KTL 457
L
Sbjct: 445 TAL 447
|
Length = 451 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 3e-73
Identities = 134/434 (30%), Positives = 208/434 (47%), Gaps = 66/434 (15%)
Query: 78 NRAPVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVLTHVSNM 136
R P+++ G G +YD +G++ LD G+ VN +GH + +A+V Q + L
Sbjct: 22 ARPPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVN-VGHNREEVKEAIVRQLDELE----- 75
Query: 137 YYSI-------PQIELAKRLVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDS 186
YYS IEL+ L+ + RVFFS+ G+++ E A+K AR++ +
Sbjct: 76 YYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRG--- 132
Query: 187 KEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE----YGN------- 234
+P T+F+S +HG G ++ +R +EP++PG VE Y N
Sbjct: 133 -QPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDP 191
Query: 235 -------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLV 284
+ I P AA EP+QG GG+ F +R+ CD G LL+
Sbjct: 192 EELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLI 251
Query: 285 FDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--- 340
DEV G GRTG + +G+ PDIM LAK + G +P+GA +V ++A A
Sbjct: 252 ADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFG 311
Query: 341 ----HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396
HG T++G P+ C AA+A LD + A+ +K+G Y E L+ R V DVR
Sbjct: 312 GAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVR 371
Query: 397 GLGLIIGIEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISE 443
G GL++ ++ + P V D R++G+LV + G + L PPL+I
Sbjct: 372 GKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS--GTKIILSPPLVIQR 429
Query: 444 QELDQAVEILCKTL 457
+++D+ V+ L L
Sbjct: 430 EDVDRIVDALDAGL 443
|
Length = 449 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 3e-72
Identities = 142/397 (35%), Positives = 204/397 (51%), Gaps = 42/397 (10%)
Query: 92 LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ---IELAKR 148
L+D EGREY+D ++GIAV GH + AV Q + TH + Y +P + LA+R
Sbjct: 34 LWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTA--YQIVPYASYVTLAER 91
Query: 149 LVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTM 205
+ A + D + F TG EA E A+K AR + + P ++F +FHGRT+
Sbjct: 92 INALAPIDGPAKTAFFTTGAEAVENAVKIARAY-------TGRPG--VIAFGGAFHGRTL 142
Query: 206 GALALTSK-EHYRSPFEPVMPGVNFVEYGNI-------EATRKL-------IQPGKTAAV 250
+ALT K Y+ F P + Y N EA + I P + AA+
Sbjct: 143 LTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAI 202
Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
+EPIQGEGG A EF+ LR CD+ G LL+ DEVQ G RTG L+A E+Y + PD+
Sbjct: 203 LLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL 262
Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
+T+AK L GG+PI A + +V A G G T+AG+PL AA+AVLD I+
Sbjct: 263 ITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQR 322
Query: 371 VSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT---------PVVDACRDSG 421
G + E L++ A P + D+R G ++ +EF+ T + G
Sbjct: 323 ALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEG 382
Query: 422 LLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTL 457
LL+L+ G GNV+R + PL I + + +A+ IL + L
Sbjct: 383 LLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLL 419
|
Length = 421 |
| >gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 7e-72
Identities = 137/409 (33%), Positives = 204/409 (49%), Gaps = 41/409 (10%)
Query: 74 VGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD--QANVL 130
V +Y R+ P V KG L+D +G+EY+D +G GH + +A++D + +
Sbjct: 10 VRSYCRSFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGI 69
Query: 131 THVSNMYYSIPQIELAKRLVACSFADR------VFFSNTGTEANEAAIKFARKFQRHSNP 184
H +M + + E + R F TGT A E+A+K ARK SN
Sbjct: 70 IHSLDMA-TEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSN- 127
Query: 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN--------IE 236
VSFTN+FHG T+G+L++T R + V+ + Y I
Sbjct: 128 --------VVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIA 179
Query: 237 ATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
KL++ AAV +E +QGEGGI A+ E+LQ L C LL+ D++Q G
Sbjct: 180 YFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAG 239
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAI-NYGDHGSTFAGSP 349
GRTG ++ E GI PDI+ L+K ++G GLP+ AL K + G+H TF G+
Sbjct: 240 CGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPL--ALTLIKPELDVWKPGEHNGTFRGNN 297
Query: 350 LVCNAAIAVLDKI-SNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFD 407
L A A L+ S+ AF +V +K +E L + +A P +K VRG GL+ GIE
Sbjct: 298 LAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECG 357
Query: 408 VS--ATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEIL 453
A + A ++GL++ T+G V++L+PPL I E+ L Q ++IL
Sbjct: 358 DGDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDIL 406
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 8e-70
Identities = 134/375 (35%), Positives = 212/375 (56%), Gaps = 22/375 (5%)
Query: 92 LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQ-ANVLTHVSNMYYSIPQIELAKRLV 150
L D +G E++D G + +GH + + I AV +Q A H + + + LAK L
Sbjct: 69 LIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRAL-LAKTLA 127
Query: 151 ACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
A + FF N+GTE+ EAA+K A+ +Q +P K F++ + +FHG+++GAL
Sbjct: 128 ALTPGKLKYSFFCNSGTESVEAALKLAKAYQ---SPRGK---FTFIAASGAFHGKSLGAL 181
Query: 209 ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK-----TAAVFVEPIQGEGGIYS 263
+ T+K +R PF P++PG + V +G+IEA K + K AA+ +EPIQGEGG+
Sbjct: 182 SATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVIL 241
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LP 322
+ +L +R CD+ GALL+ DEVQ G+GRTG ++A EH G+ PDI+ LAK L GG +P
Sbjct: 242 PPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMP 301
Query: 323 IGAALVTEKVASAI--NYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKE 380
IGA + TE V S + N H +TF G+PL C AA+A ++++ A + KG + +
Sbjct: 302 IGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLD 361
Query: 381 TLKQKLARNPH-VKDVRGLGLIIGIEF---DVSATPVVDACRDSGLLVLTAGKGNVVRLV 436
+Q A P + + RG GL++ IEF ++ + + + L+ T +R+
Sbjct: 362 GFQQLAAEYPDLIIEARGKGLLMAIEFRDNEIGYAFAKELFQQNILVAGTLNNAKSIRIE 421
Query: 437 PPLIISEQELDQAVE 451
PPL I+ ++ ++
Sbjct: 422 PPLTITIEQCALVIK 436
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 2e-68
Identities = 136/429 (31%), Positives = 212/429 (49%), Gaps = 48/429 (11%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-- 132
G N P S G + D +G +Y+D + I +GH +A+ Q + H
Sbjct: 31 GVSNGIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTG 90
Query: 133 VSNMYYSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
+ M Y P IELA++L A SF +V F N+G EA E A+K ARK+ +K
Sbjct: 91 FNVMMYE-PYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKY-------TKRQ 142
Query: 190 ATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN-------------- 234
+SF+ FHGRT+ + +TSK + Y+ F P P V +
Sbjct: 143 GI--ISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYD 200
Query: 235 ---IEATRKL----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
IE + + P AAV +EP+QGEGG +K+F+Q +R+ C + G L V DE
Sbjct: 201 DFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADE 260
Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
+Q G RTG +A EH+ + PD++T++K L G+PI + +++ G+ G T+AG
Sbjct: 261 IQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAG 320
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF- 406
SPL C AA+AVLD I + G ++ + + DVRGLG + E
Sbjct: 321 SPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELV 380
Query: 407 --------DVSATP-VVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKT 456
D + T + GLL+L+AG GNV+R++ PL+I++++L++ + I+ ++
Sbjct: 381 QDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEES 440
Query: 457 LPVLDSNSN 465
L +N
Sbjct: 441 LQACYEKAN 449
|
Length = 451 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 4e-68
Identities = 134/411 (32%), Positives = 198/411 (48%), Gaps = 43/411 (10%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM---Y 137
PV +A G + D +G +DL SGIAV ++G+ ++AV +Q TH M Y
Sbjct: 39 PVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPY 98
Query: 138 YSIPQI-ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
+ E RL R N+G EA E A+K AR + + A V F
Sbjct: 99 EGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSY-------TGRQAV--VVF 149
Query: 197 TNSFHGRTMGALALTSK-------------EHYRSPF-----EPVMPGVNFVEYGN--IE 236
+++HGRT +ALT+K E YR+P +P + E I
Sbjct: 150 DHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAIT 209
Query: 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
K + AAV +EPIQGEGG + FL L + C + G + + DEVQ G RTG
Sbjct: 210 VIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG 269
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
+A EH GI PD++T AK +AGGLP+ A ++ A + G G T+ G+P+ C AA+
Sbjct: 270 AWFACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAAL 329
Query: 357 AVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT----- 411
A ++ I +A + + L+ A + + DVRG G +I IE T
Sbjct: 330 AAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDA 389
Query: 412 ----PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 457
+ A +G++VLT G GNV+RL+PPL+I ++ L + +++L L
Sbjct: 390 ELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAAL 440
|
Length = 443 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 9e-67
Identities = 137/423 (32%), Positives = 216/423 (51%), Gaps = 54/423 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY--Y 138
P+++ G+G KLYD G EY D S I +N GH + +A+ +Q N + H S +
Sbjct: 39 PLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAH-STLLGLA 97
Query: 139 SIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
++P I LA++L V +VF+S++G A E AIK A ++ ++ K FV+
Sbjct: 98 NVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKK---QRFVTL 154
Query: 197 TNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGN---------IEATR 239
N++HG T+GA+++ + + + + ++ P YGN +E
Sbjct: 155 KNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELE 214
Query: 240 KLIQPG--KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+L++ + AA+ VEP +QG GG+ + K +L+ LR+ C L + DEV G GRTG
Sbjct: 215 ELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG 274
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTFAG 347
++A EH + PDIMT K L GG LPI + T+++ +A YGD HG ++ G
Sbjct: 275 KMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAF-YGDYEEQKTFFHGHSYTG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE-- 405
+PL C A+A L+ + V++K Y L + L HV D+R LGL++GIE
Sbjct: 334 NPLGCAVALANLELYEKTNLIEQVARKTEYVATQL-EDLFALKHVGDIRQLGLMVGIELV 392
Query: 406 --------FDVSATPVVDAC---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454
F+ + V C R+ G+ LT GN + +PPL + ELD+ + IL
Sbjct: 393 KNKETKEPFEWTERVGVQVCKRSRELGM--LTRPLGNTIVFMPPLASTIDELDEMLRILY 450
Query: 455 KTL 457
K +
Sbjct: 451 KAI 453
|
Length = 460 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 3e-66
Identities = 140/437 (32%), Positives = 210/437 (48%), Gaps = 57/437 (13%)
Query: 70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV 129
K LL Y PV+ + GKG LYD G +Y D SSG +GHG + A+ +QA
Sbjct: 7 KPLLGQPY---PVI-SHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEE 62
Query: 130 LTHV-SNMYYSIPQIELAKRLVACSFADR--VFFSNTGTEANEAAIKFA-RKFQRHSNPD 185
++ V + + S P +LAK+L S D FF N+G+EANE A+K A + FQ
Sbjct: 63 VSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQG 122
Query: 186 SKEPATEFVSFTNSFHGRTMGALALT-------------------SKEH-YRSPFEPVMP 225
+ +S S+HG TMGAL+++ S + YR P + V P
Sbjct: 123 K----HKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYP 178
Query: 226 GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLV 284
+E + I AA EPI G G K + + +++ CD L +
Sbjct: 179 TCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFI 238
Query: 285 FDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALVTEKVASAINYGDH-- 341
DEV GLGRTG ++A EH+G+ PDIMTL K L AG PI A +V+++V I G
Sbjct: 239 ADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSI 298
Query: 342 --GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG 399
G T + +PL A+AVL+ + ++KG Y + L++ ++ + DVRG G
Sbjct: 299 MSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKG 358
Query: 400 LIIGIEF---DVSATP----------VVDACRDSGLLV------LTAGKGNVVRLVPPLI 440
L+IG+EF + P ++ +GLL+ +G+ V + PP+
Sbjct: 359 LLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMT 418
Query: 441 ISEQELDQAVEILCKTL 457
I+ ELD+ + I K++
Sbjct: 419 ITYSELDELLSIFAKSV 435
|
Length = 447 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 7e-64
Identities = 125/441 (28%), Positives = 200/441 (45%), Gaps = 62/441 (14%)
Query: 64 EVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
ME+ V +Y R P A +GC + D EG+EYLD +G ALGH + +
Sbjct: 8 NEMESN----VRSYPRKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQK 63
Query: 123 VVD--QANVLTHVSNMYYSIPQIELAKRLVACSFADR-----VFFSNTGTEANEAAIKFA 175
++D Q+ + H ++ + + L+ + F +G +A EAAIK A
Sbjct: 64 ILDYLQSGLPLHTLDLTTPLKD-AFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--- 232
+ + +N +SF+ FHG T+GALA+T ++ +MPGV F+ Y
Sbjct: 123 KTYTGRTN---------VISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHE 173
Query: 233 --------------GNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLR 273
+IE I+ K AAV +E IQGEGG+ +A E+LQ +R
Sbjct: 174 YRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIR 233
Query: 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVA 333
+ L+ DEVQ G GR+G ++A EH GI PD + ++K + GGLP+ L+ +
Sbjct: 234 EVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPEF- 292
Query: 334 SAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK 393
A H TF G+ L L+ + + ++G L + +P +
Sbjct: 293 DAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIG 352
Query: 394 DVRGLGLIIGIEFDVS----------------ATPVVDACRDSGLLVLTAGK-GNVVRLV 436
+VRG GL+ GI A + AC ++GLL+ T G+ G V RL+
Sbjct: 353 NVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLL 412
Query: 437 PPLIISEQELDQAVEILCKTL 457
P+ I ++E ++ + + +
Sbjct: 413 CPITIDQEECEEGISRFKQAV 433
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (543), Expect = 9e-64
Identities = 122/407 (29%), Positives = 200/407 (49%), Gaps = 46/407 (11%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142
VLAS +G + D +G++Y+D G V+ LG+G I+ V +Q L + +
Sbjct: 57 VLASAEGIYIEDVDGKKYMDFH-GNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETA 115
Query: 143 IELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF 200
IE A++L + + RV F+ GT A A+K AR + + VS +SF
Sbjct: 116 IECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNF---------KVVSLWDSF 166
Query: 201 HGRTMGALALTSKEHYRSPFEPVMPGVNFVE--------YGNIEATR---------KLIQ 243
HG ++ A+++ + +R P+M GV + + + + + + +
Sbjct: 167 HGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK 226
Query: 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303
G A E ++ + +K + + +R+ CD LL+ DE+ G+GRTG + H+
Sbjct: 227 EGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQA 285
Query: 304 YGIFPDIMTLAKPLAGGL-PIGAALVTEK--VASAINYGDHGSTFAGSPLVCNAAIAVLD 360
YGI PDI+ + K L GGL PI A + +K A+ I+ G + T SPL C AA+A ++
Sbjct: 286 YGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHY--THEKSPLGCAAALATIE 343
Query: 361 KISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------A 410
I L V + +E L + A+ P + DVRG+GL+ G+E A
Sbjct: 344 VIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEA 403
Query: 411 TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
V+ C ++G L +GNV++L PPLII+ +EL QA+ IL + +
Sbjct: 404 EAVLYRCLNNG-LSFKVSQGNVIQLSPPLIITREELTQALAILEEAI 449
|
Length = 459 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 1e-60
Identities = 141/401 (35%), Positives = 199/401 (49%), Gaps = 44/401 (10%)
Query: 85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ-- 142
S + L D EG EY+D ++GIAV GH D + AV Q TH + Y +P
Sbjct: 27 QSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTA--YQIVPYES 84
Query: 143 -IELAKRLVAC----SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
+ LA+++ A A FF+ TG EA E A+K AR + P ++F+
Sbjct: 85 YVTLAEKINALAPVSGQAKTAFFT-TGAEAVENAVKIARA-------HTGRPGV--IAFS 134
Query: 198 NSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN----------IEATRKL----I 242
FHGRT +ALT K Y+ F P V V Y + ++A +L I
Sbjct: 135 GGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDI 194
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
+ + AA+ EP+QGEGG A KE + +R CD+ G +++ DEVQ G RTG L+A +
Sbjct: 195 EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMD 254
Query: 303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362
HY PD+MT+AK LAGG+P+ + + A G G T+AG+PL AA AVL+ I
Sbjct: 255 HYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNII 314
Query: 363 SNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---------VSATPV 413
+ ++ G K TL P + VRGLG +I EF+ A +
Sbjct: 315 DKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKI 374
Query: 414 VDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEIL 453
GLL+LT G GNV+R + PL I + + D A++IL
Sbjct: 375 QQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKIL 415
|
Length = 421 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 1e-60
Identities = 133/425 (31%), Positives = 204/425 (48%), Gaps = 49/425 (11%)
Query: 76 TYNR----APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT 131
T NR AP +L S +G DA+GR+ LD ++G+ GHG + ++AV QA L
Sbjct: 23 TANRQFKAAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLD 82
Query: 132 HVSNMYYSIPQ-IELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
+ P ELA+RL + D VFF+N+G+E+ + A+K A + R ++
Sbjct: 83 YAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTR- 141
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------EY 232
T + +HG G +++ + R F ++PGV+ + E+
Sbjct: 142 --TRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEH 199
Query: 233 GNIEATR--KLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
G A +L+ AAV VEP+ G G+ K +LQ LR+ CD G LL+FDE
Sbjct: 200 GAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDE 259
Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------ 340
V G GR G +A E +G+ PDI+T AK L G +P+GA + ++++ A G
Sbjct: 260 VITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEF 319
Query: 341 -HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG 399
HG T++ P+ C A +A LD ++ YF++ + L PHV D+R +G
Sbjct: 320 FHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHS-LKGLPHVIDIRNIG 378
Query: 400 LIIGIEFD-------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEI 452
L+ GIE C + GLLV G+ + L PPLII + ++D+ V+
Sbjct: 379 LVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT--GDTIALSPPLIIEKAQIDELVDA 436
Query: 453 LCKTL 457
L L
Sbjct: 437 LGDAL 441
|
Length = 445 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (517), Expect = 4e-60
Identities = 127/428 (29%), Positives = 205/428 (47%), Gaps = 61/428 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNA-LGHGDADWIKAVVDQANVLTHVSNMYYS 139
P+V+A +G ++D EGR YLD SS + VN +GH + A+ +QA L V+ + +
Sbjct: 36 PMVIAGAEGSYVWDYEGRRYLDFSSQL-VNTNIGHQHPKVVAAIQEQAARLCTVAPAHAN 94
Query: 140 IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
+ E A+ + + D +VFF+N G +ANE A++ AR + +S
Sbjct: 95 DARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRP---------KVLSAY 145
Query: 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVN------------FVEYGNIEATRKL---- 241
S+HG T A+ LT + R P + GV E R L
Sbjct: 146 RSYHGGTGSAINLTG-DPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLE 204
Query: 242 --IQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
I+ P AA+ +E + G GI +L +R+ CD G +L+ DEV G GRTG
Sbjct: 205 RVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG 264
Query: 297 YLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALVTEKVASAINYGDH----GSTFAGSPLV 351
+A EH+G+ PD++T AK + +G +P+G ++E +A+ + D G T++G PL
Sbjct: 265 KWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAAT--FADRPYPGGLTYSGHPLA 322
Query: 352 CNAAIAVLDKISNPAFLASVSKKG-HYFKETLKQKLARNPHVKDVRGLGLIIGIEF---- 406
C AA+A ++ + + + ++ G L++ R+P V +VRGLG+ +E
Sbjct: 323 CAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADR 382
Query: 407 ---------DVSATP---VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454
S+ V AC++ GLL GN + +VPP ++E E+ + + IL
Sbjct: 383 ETREPLAPYGASSAAMAAVKAACKERGLLPFVN--GNRIHVVPPCTVTEDEVREGLAILD 440
Query: 455 KTLPVLDS 462
L V D+
Sbjct: 441 AALAVADA 448
|
Length = 451 |
| >gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 3e-59
Identities = 137/429 (31%), Positives = 212/429 (49%), Gaps = 66/429 (15%)
Query: 74 VGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT- 131
V +Y R P+ +A +G + D EG +YLD +G ALGH D ++++ D VLT
Sbjct: 33 VRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQD---VLTS 89
Query: 132 ----HVSNMYYSIPQIELAKRLVACSFADR-----VFFSNTGTEANEAAIKFARKFQRHS 182
H ++ + ++ L++ F +G +A EAAIK A+ + S
Sbjct: 90 GLPLHTLDLTTPLKD-AFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRS 148
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---------- 232
N +SF+ +HG T GALA+T ++ +MPGV F+ Y
Sbjct: 149 N---------VISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGI 199
Query: 233 GNIEATRKL----------IQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
G + L ++ G K AAV +E IQGEGG+ A E+LQ +R+ G
Sbjct: 200 GGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHG 259
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
LL+ DEVQ G RTG ++A EH GI PDI+ ++K + GGLP+ A L +K A G
Sbjct: 260 ILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGLPL-AVLGIKKEFDAWQPGG 318
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400
H TF G+ L + L + + +++G + K L + R P + +VRG GL
Sbjct: 319 HTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGL 378
Query: 401 IIGIEF-----------------DVSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIIS 442
+IGIE +++A + AC ++GLL+ G+ GNVVRL+PPL+I+
Sbjct: 379 MIGIEIVDERQPADAMGSYPADGELAAA-IQKACFENGLLLERGGRNGNVVRLLPPLLIT 437
Query: 443 EQELDQAVE 451
+ E ++ ++
Sbjct: 438 QAECEEFID 446
|
Length = 459 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 2e-58
Identities = 136/430 (31%), Positives = 207/430 (48%), Gaps = 51/430 (11%)
Query: 76 TYNR----APVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVL 130
T NR AP +L + KG +GR LD ++G+ VNA GHG + ++AV QA L
Sbjct: 20 TANRQFKKAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNA-GHGRPEIVEAVRAQAGEL 78
Query: 131 THVSNMYYSIPQ-IELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187
+ P+ ELA R+ + VFF+N+G+E+ + A+K A + R S+
Sbjct: 79 DYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSR 138
Query: 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------E 231
T + +HG G +++ R F ++PGV+ + E
Sbjct: 139 ---TRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPE 195
Query: 232 YG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286
+G +E L AAV VEP+ G G+ K +LQ LR+ CD G LL+FD
Sbjct: 196 HGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFD 255
Query: 287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD----- 340
EV G GR G +A +++G+ PD++T AK L G +P+GA V+ ++ A G
Sbjct: 256 EVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIE 315
Query: 341 --HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398
HG T++G PL C AA+A LD L ++ Y+++ L L PHV D+R L
Sbjct: 316 FFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDAL-HSLRDAPHVIDIRNL 374
Query: 399 GLIIGIEFD-------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVE 451
GL+ +E A V C + GL++ G+++ L PPLII E ++D+ +
Sbjct: 375 GLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT--GDILALSPPLIIEEAQIDELFD 432
Query: 452 ILCKTLPVLD 461
IL + L
Sbjct: 433 ILAQALKETI 442
|
Length = 442 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 9e-57
Identities = 133/411 (32%), Positives = 199/411 (48%), Gaps = 50/411 (12%)
Query: 86 SGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIE 144
G+G L D EG+ YLD S VN GH + + + DQ + L HV +S P IE
Sbjct: 35 RGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIE 94
Query: 145 LAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHG 202
L++RLV + R F+++ G+ A E A+K + + R+ K FV+ TNS+HG
Sbjct: 95 LSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRK---KRFVTLTNSYHG 151
Query: 203 RTMGALALTSKEHYRSPFEPVM---------------PGVNFVEYGN--IEATRKLIQPG 245
T+ A+++ + ++P++ G+++ E+ + +
Sbjct: 152 ETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEH 211
Query: 246 --KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
+ AAV VEP IQG GG+ +L+ LR+ACD G L+ DE+ G GRTG ++A E
Sbjct: 212 HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACE 271
Query: 303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTFAGSPLVCN 353
GI PD + L+K L GG LP+ A L T+ V A Y D H ++ G+PL C
Sbjct: 272 QAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAF-YDDYPTLRAFLHSHSYTGNPLACA 330
Query: 354 AAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF---DVSA 410
AA+A LD + + E LA +PHV +VR G+I+ IE S
Sbjct: 331 AALATLDIFEQDNVIENNRALARRMAEATAH-LADHPHVAEVRQTGMILAIEMVQDKASK 389
Query: 411 TPVVDACRDSGLLV----LTAGK-----GNVVRLVPPLIISEQELDQAVEI 452
TP R GL V L G G+VV +PP +I+ +++D E+
Sbjct: 390 TPYPWQER-RGLKVYQHALERGALLRPLGSVVYFLPPYVITPEQIDFLAEV 439
|
Length = 466 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 2e-56
Identities = 118/421 (28%), Positives = 186/421 (44%), Gaps = 54/421 (12%)
Query: 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY- 138
+V+ +G + DA+GR YLD G+ +G+G + A+ DQA L + +
Sbjct: 33 GSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDM 92
Query: 139 -SIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPATEFV 194
+ P ELA +L + D VF + G+ A ++A++F + P K +
Sbjct: 93 TNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKH----II 148
Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN-------------------- 234
+ +++HG T +LT K R+ F+ V+ + N
Sbjct: 149 TRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDE 208
Query: 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
E + AA EPI G GG+ + +R+ C L + DEV G GR
Sbjct: 209 FEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGR 268
Query: 295 TGYLWA-HEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAI-------NYGDHGSTF 345
G+ +A +GI PDI+T AK L G P+GA +++E++ I N HG T+
Sbjct: 269 LGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTY 328
Query: 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405
+G P+ C AA+ ++ + V + G YF+E L L P V DVRG L+ +E
Sbjct: 329 SGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERL-ASLRELPLVGDVRGDHLMACVE 387
Query: 406 F------------DVSATPVVDA-CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEI 452
D++ +D C++ GLLV V L PPLII+ ++D+ V I
Sbjct: 388 CVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHLCV--LSPPLIITRAQIDEIVAI 445
Query: 453 L 453
L
Sbjct: 446 L 446
|
Length = 466 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 5e-56
Identities = 128/424 (30%), Positives = 199/424 (46%), Gaps = 61/424 (14%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY---- 138
V+ +G L+D+EG + LD +G+ +G+G + A Q L YY
Sbjct: 35 VITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELP-----YYNTFF 89
Query: 139 ---SIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
P IELA +L VA + VFF+N+G+EAN+ ++ R + K
Sbjct: 90 KTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQK---KVI 146
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV---------------EYGNIEAT 238
+S N +HG T+ +L ++ + +PG+ + E+G + A
Sbjct: 147 ISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFG-LAAA 205
Query: 239 RKL------IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
R+L + AA EPIQG GG+ + ++ C LLV DEV CG
Sbjct: 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGF 265
Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASA-INYGD---HGSTFAG 347
GRTG + +H+GI PD+MT+AK L G +P+GA V ++VA I G HG T++G
Sbjct: 266 GRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSG 325
Query: 348 SPLVCNAAIAVLDKISNPAFLASV-SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE- 405
P+ A+A L + + + V G Y ++ L ++LA +P V +VRG+GL+ IE
Sbjct: 326 HPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRL-RELADHPLVGEVRGVGLVGAIEL 384
Query: 406 ---------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453
F+ T D C +GL++ G + + PPL+I+ E+D+ VE
Sbjct: 385 VKDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMI--ISPPLVITHAEIDELVEKA 442
Query: 454 CKTL 457
K L
Sbjct: 443 RKAL 446
|
Length = 456 |
| >gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 4e-54
Identities = 133/442 (30%), Positives = 199/442 (45%), Gaps = 90/442 (20%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA--NVLT----- 131
R P+ L +G + D EGR+++D +G ALGH VV +A VL
Sbjct: 44 RIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHN-----HPVVIEAIQQVLADELPL 98
Query: 132 H------------VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
H V +++ S+P+ A+ A F TGT+A EAA+K +
Sbjct: 99 HTLDLTTPVKDQFVQDLFASLPE-AFARE------AKIQFCGPTGTDAVEAALKLVKT-- 149
Query: 180 RHSNPDSKEPAT---EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---- 232
AT +SF +HG + GAL+L + P ++PGV F+ Y
Sbjct: 150 ----------ATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDY 199
Query: 233 -------GN---------IEATRKLIQP----GKTAAVFVEPIQGEGGIYSATKEFLQFL 272
G +E L P AAV +E +QGEGG+ A E+L+ L
Sbjct: 200 RCPFGLGGEAGVRANLHYLE--NLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGL 257
Query: 273 RDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV 332
R ++AG L+ DE+Q G GRTG ++A EH GI PD++ L+K + G LP+ A +V +
Sbjct: 258 RRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPL-AVVVYREW 316
Query: 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV 392
G H TF G+ + A A L I + G +E L+Q P +
Sbjct: 317 LDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQL 376
Query: 393 KDVRGLGLIIGIEF-------DVSATPVVDA---------CRDSGLLVLTAGK-GNVVRL 435
DVRG GL++G+E D P + C GL++ G+ G+VVR
Sbjct: 377 GDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRF 436
Query: 436 VPPLIISEQELDQAVEILCKTL 457
+PPLII+ +++D+ EI + +
Sbjct: 437 LPPLIITAEQIDEVAEIFAEAV 458
|
Length = 464 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 3e-51
Identities = 119/425 (28%), Positives = 198/425 (46%), Gaps = 56/425 (13%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSNMYY 138
P+V+ G+G +YD G+ Y++ +G+ ALG + ++A Q L H +
Sbjct: 31 PLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKS 90
Query: 139 SIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHS---NPDSKEPATEF 193
P I+LA++LVA + +VFF+N+G+EAN+ +K + ++ P+ K+
Sbjct: 91 HGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLV--WYYNNALGRPEKKK----I 144
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV---------NFVEYGNIE---ATR-- 239
+S +HG T+ + +LT + F+ + + F G E ATR
Sbjct: 145 ISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLA 204
Query: 240 ----KLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
LI P AA EP+ G GG+ K + + ++ LLV DEV CG
Sbjct: 205 NELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGF 264
Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAI--------NYGDHGS 343
GRTG ++ E +GI PDI+ ++K L+ P+ A L+ EKV I +G HG
Sbjct: 265 GRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFG-HGF 323
Query: 344 TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403
T +G P+ A+ L I + + +++G + L+ LA +P V +VRG+GLI
Sbjct: 324 TASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRA-LADHPLVGEVRGVGLIAA 382
Query: 404 IEF--DVSATPVVDACRDSGLL---------VLTAGKGNVVRLVPPLIISEQELDQAVEI 452
+E D + + G V++ G+ + PPLII+ ++D+ V+
Sbjct: 383 VELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLIITAAQVDEMVDR 442
Query: 453 LCKTL 457
+ L
Sbjct: 443 FGRAL 447
|
Length = 460 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 3e-50
Identities = 104/380 (27%), Positives = 163/380 (42%), Gaps = 52/380 (13%)
Query: 59 GRNNKEVMEAEKKLLVG----------TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIA 108
++ + E KK++ G + P+ + GKG L D +G EY+D G
Sbjct: 4 FPKSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWG 63
Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVACSF--ADRVFFSNT 163
LGH ++AV +Q + P ++ELA+ L+ ++V F N+
Sbjct: 64 PLILGHAHPAVVEAVQEQLERGLS-----FGAPTELEVELAE-LLIERVPSIEKVRFVNS 117
Query: 164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFE 221
GTEA +AI+ AR + + + F +HG + L A + SP
Sbjct: 118 GTEATMSAIRLARAY-------TGRDK--IIKFEGCYHGHSDSLLVKAGSGAATLGSPSS 168
Query: 222 PVMPG-----VNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274
P +P + Y ++EA + + AAV VEP+ G G+ FL+ LR+
Sbjct: 169 PGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRE 228
Query: 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVAS 334
++ GALL+FDEV G R A +YG+ PD+ TL K + GGLPIGA ++
Sbjct: 229 LTEEHGALLIFDEVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIME 287
Query: 335 AIN-----YGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLAR 388
+ Y T +G+PL A +A L+++ + G E L+ R
Sbjct: 288 QLAPLGPVY--QAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAER 345
Query: 389 --NPHVKDVRGLGLIIGIEF 406
P V +G + GI F
Sbjct: 346 HGIPLT--VNRVGSMFGIFF 363
|
Length = 432 |
| >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 4e-49
Identities = 128/446 (28%), Positives = 199/446 (44%), Gaps = 66/446 (14%)
Query: 59 GRNNKEVMEAEKKLLVG----TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH 114
GR+ E++ K+ L+ +Y P+ G G L D GR YLD + V +GH
Sbjct: 582 GRDKAEILRERKEHLLPNLSISY-SDPIKFVRGWGVWLIDNRGRAYLDCFNN--VCHVGH 638
Query: 115 GDADWIKAVVDQANVLTHVSNMYYSIP-QIELAKRLVACSFADRV---FFSNTGTEANEA 170
+ A QA L +N Y + A+RL A + D + FF N+G+EAN
Sbjct: 639 AHPRVVAAAARQAARLN--TNTRYLHDAIVAYAERLTA-TLPDGLTVAFFVNSGSEANSL 695
Query: 171 AIKFARKF--QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-----------KEH-- 215
A++ AR QR + + +++HG T + L+ +H
Sbjct: 696 ALRLARAHTGQRDA-----------IVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVE 744
Query: 216 -------YRSPFEPVMP--GVNFVEY--GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264
YR P G F E I A + A E I G
Sbjct: 745 VAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAA--KGRGPAFFIAESIPSVAGQIFL 802
Query: 265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-YLWAHEHYGIFPDIMTLAKPLAGGLPI 323
+ +L+ + AG + + DEVQ G GR G + WA E G+ PDI+T+ KP+ G P+
Sbjct: 803 PEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPM 862
Query: 324 GAALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETL 382
GA + T ++A + + G ++ +TF G+P+ C +AVLD I + + + G+Y L
Sbjct: 863 GAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGL 922
Query: 383 KQKLARNPHVKDVRGLGLIIGIEF---DVSATP-------VVDACRDSGLLVLTAG-KGN 431
++ R + DVRG+GL +GIE + P V + R+ G+L+ T G N
Sbjct: 923 RELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDN 982
Query: 432 VVRLVPPLIISEQELDQAVEILCKTL 457
V+++ PPLI S + D +E+L L
Sbjct: 983 VLKIRPPLIFSRADADHLLEVLDDVL 1008
|
Length = 1013 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 175 bits (444), Expect = 4e-49
Identities = 118/428 (27%), Positives = 203/428 (47%), Gaps = 61/428 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY--Y 138
P+V+ +G +YD G++YLD +G+ ALG + + A +Q N L + +
Sbjct: 72 PLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRT 131
Query: 139 SIPQIELAKRLVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
+ P ++LAK L+ A +VFF+N+G+EAN+ +K + +N + +F++
Sbjct: 132 TKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYY---NNALGRPNKKKFIA 188
Query: 196 FTNSFHGRTMGALALTSKEHYRSPFE-PV---------------MPGVNFVEYGNIEATR 239
+ S+HG T+ + +L+ F+ P +PG E+ +TR
Sbjct: 189 RSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEF----STR 244
Query: 240 ------KLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
LI P AA EP+ G GG+ + + ++ L + DEV C
Sbjct: 245 LADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVIC 304
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-----YGD--HG 342
GR G ++ + Y I PD+++LAK L+ +PIGA LV+ +++ I+ G HG
Sbjct: 305 AFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHG 364
Query: 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402
T++G P+ C A+ L V+K F++ +K + +P + ++RG GLI+
Sbjct: 365 FTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIK-AFSGSPIIGEIRGTGLIL 423
Query: 403 GIEFDVSATP-------------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449
G EF + +P C+ G+LV A G+ + + PPLII+ +E+D+
Sbjct: 424 GTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA--GDNIMMSPPLIITPEEVDEL 481
Query: 450 VEILCKTL 457
+ I K L
Sbjct: 482 ISIYGKAL 489
|
Length = 504 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 9e-47
Identities = 133/425 (31%), Positives = 196/425 (46%), Gaps = 52/425 (12%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVLTHVSNMY 137
R VLAS KG L DA G + LD +G+ VN G+G ++A +Q L + + +
Sbjct: 27 RGVTVLASAKGATLTDASGHQLLDAFAGLWCVNV-GYGQESIVEAAAEQMRELPYATGYF 85
Query: 138 Y--SIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
+ S P I LA +L + V+F+ G++A ++A++F R + + SK+ +F
Sbjct: 86 HFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKK---QF 142
Query: 194 VSFTNSFHGR-TMGA-------------LALTSKEH------YRSPFEPVMPGVNFVEYG 233
+S +HG ++GA L L + YR+P +
Sbjct: 143 ISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVA 202
Query: 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
+ A + AA F EPIQG GG+ K +L+ +R+AC + G L V DEV G G
Sbjct: 203 ALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFG 262
Query: 294 RTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALVTEKVASAINYG-------DHGSTF 345
RTG L+A E G+ PD+MT+AK L +G +P+GA L+++ V I G HG T+
Sbjct: 263 RTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTY 322
Query: 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405
+ P+ + VL LA+ K G F L L +P V DVRG GL+ +E
Sbjct: 323 SAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGL-DALRAHPLVGDVRGRGLLGALE 381
Query: 406 ----------FDVSATP---VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEI 452
FD + P + D +G LV A V+ P L +E E D E
Sbjct: 382 LVADKATKTPFDAALDPADRIFDRAYANG-LVFRAFGDGVLGFAPALCCTEGEFDLIFER 440
Query: 453 LCKTL 457
KTL
Sbjct: 441 TRKTL 445
|
Length = 459 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-46
Identities = 131/411 (31%), Positives = 205/411 (49%), Gaps = 51/411 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLD-LSSG-IAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
PVV A G C+L A+GR +D +SS A++ H + A+ Q + ++HV M+
Sbjct: 28 PVVSAEG--CELILADGRRLVDGMSSWWAAIHGYNHPQLN--AAMKSQIDAMSHV--MFG 81
Query: 139 SI---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
I P IEL ++LVA + + VF +++G+ A E A+K A ++ + EP F
Sbjct: 82 GITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EPRQRF 137
Query: 194 VSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEY-----------GNIEATRKL 241
++ + +HG T GA+++ ++ S ++ +P F +I +L
Sbjct: 138 LTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARL 197
Query: 242 IQP--GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG L
Sbjct: 198 MAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKL 257
Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLVC 352
+A EH GI PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+PL C
Sbjct: 258 FACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLAC 317
Query: 353 NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATP 412
A A L + + + V+ +E L L P V DVR LG IG+ V T
Sbjct: 318 AVANASLSLLESGDWQQQVAAIEAQLREEL-APLRDAPMVADVRVLG-AIGV---VETTR 372
Query: 413 VVDACR------DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
V+ + G+ + GK ++ L+PP II ++L + + + +
Sbjct: 373 PVNMAALQRFFVEQGVWIRPFGK--LIYLMPPYIILPEQLQRLTAAVNRAV 421
|
Length = 428 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-46
Identities = 121/430 (28%), Positives = 189/430 (43%), Gaps = 68/430 (15%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGH------GDADWIKAVVDQANVLTHVSNM 136
L +G L DA GR YLD+ + A +ALG D ++ + A L SN
Sbjct: 30 LERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAA--LNKPSNS 87
Query: 137 -YYSIPQIELAK---RLVACSFADRVFFSNTGTEANEAAIKFA-----RKFQRHSNPDSK 187
Y++ R++ +FF + G A E A+K A RK + +
Sbjct: 88 DVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPAL 147
Query: 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-------PGVNFVEYG-NIEAT- 238
T+ + +FHGR+ L+LT+ + ++ P P + F G ++E
Sbjct: 148 --GTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVE 205
Query: 239 ----RKLIQ--------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286
L Q P A EPIQGEGG EF +R+ CD+ ALL+FD
Sbjct: 206 ALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFD 265
Query: 287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTE------KVAS 334
EVQ G+G TG WA++ G+ PDI+ K +AG V E V+S
Sbjct: 266 EVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQVCGIMAGR------RVDEVEDNVFAVSS 319
Query: 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VK 393
IN ST+ G+ + A +L+ I + + +++G Y L++ A P V
Sbjct: 320 RIN-----STWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVS 374
Query: 394 DVRGLGLIIGIEFDVSAT--PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVE 451
+VRG GL+ + +A V+ + G+LVL G+ +R P L ++ +E+D A++
Sbjct: 375 NVRGRGLMCAFDLPTTADRDEVIRRLWEEGVLVLPCGE-RSIRFRPALTVTTEEIDAAID 433
Query: 452 ILCKTLPVLD 461
L + LP +
Sbjct: 434 ALRRALPEVA 443
|
Length = 443 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 5e-46
Identities = 130/422 (30%), Positives = 193/422 (45%), Gaps = 54/422 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
+ +A G+G LYD +GR YLD S VN GH + A+ DQ + L H M
Sbjct: 37 LLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHA--MLAGC 94
Query: 141 ---PQIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IELA+RL A + FF++ G A E A+K + R+ K EFV
Sbjct: 95 THEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKR---EFVC 151
Query: 196 FTNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGNIEA---------T 238
N +HG T+GAL +T ++ ++P++ P G A
Sbjct: 152 LANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADV 211
Query: 239 RKLIQP--GKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
R+L GK AA+ VEP +Q G+ +L+ LR CD G L+ DE+ G GRT
Sbjct: 212 RRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRT 271
Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGS 348
G +A E G++PD + L+K ++GG LP+ L + + +A D H ++ G+
Sbjct: 272 GTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGN 331
Query: 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408
PL C AA+A LD + LA ++K + L LA +P V+ +R G I FDV
Sbjct: 332 PLACRAALATLDLFAEDDVLARNARKSARLRAALA-PLAAHPQVRHLRQRGTIFA--FDV 388
Query: 409 SATPVV---------DACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459
+ +A + LL+ G V L+PP ++ + E+ E +T
Sbjct: 389 ALDGDAARTFSRRFFEAALERELLLRPI--GTTVYLMPPYVLDDDEIAWLAE---RTRAT 443
Query: 460 LD 461
LD
Sbjct: 444 LD 445
|
Length = 453 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 4e-45
Identities = 124/414 (29%), Positives = 196/414 (47%), Gaps = 56/414 (13%)
Query: 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-I 140
V +A G+G L +GR YLD S N GH + A+ QA L V ++
Sbjct: 48 VPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHE 107
Query: 141 PQIELAKRLVACSFAD-------RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
P ++LA++L+A + +VF+++ G+ E A+K A F N + T F
Sbjct: 108 PAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA--FHYFHNRG-EHRRTRF 164
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVM---------------PGVNFVEYGNI--E 236
++ N +HG T+GALA+ YR + P++ PG + +Y +
Sbjct: 165 IALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAAD 224
Query: 237 ATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
A + L + PG+ A+ +EP +Q GG+ +L+ R+ CD GA L+ DE+ G G
Sbjct: 225 ALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284
Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGST 344
RTG L+A E G+ PD++ L+K L GG LP+ A L T+++ A + D H +
Sbjct: 285 RTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDA--FLDDSRERAFLHSHS 342
Query: 345 FAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404
+ G+PL C AA+A LD ++ +A + L ++ +PHV DVR G+++
Sbjct: 343 YTGNPLACAAALATLDIFADDDVIARNQPTAARMTQ-LAAQIGEHPHVADVRQAGMVVAF 401
Query: 405 EFDVSA---TPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQEL 446
E TP A R GL A G+V+ +PP + E +L
Sbjct: 402 ELTRGGNKRTPFPPAAR-VGLHAYRAALARGVVLRPLGDVLYWMPPYCVDEAQL 454
|
Length = 472 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 4e-45
Identities = 112/422 (26%), Positives = 196/422 (46%), Gaps = 55/422 (13%)
Query: 80 APVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVLT--HVSNM 136
++ G+G ++ DA+GR Y+D +G+ VN +G+G + +A+ +QA L H
Sbjct: 32 PGRIVEGGEGIRITDAQGRRYIDAFAGLYCVN-VGYGRTEVAEAIAEQAKELAYYHTYVG 90
Query: 137 YYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPATEF 193
+ + I L+KR++ + A +V++ +G++ANE IK + P+ K+
Sbjct: 91 HGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKK----I 146
Query: 194 VSFTNSFHGR-----TMGALAL---------------TSKEHYRSPFEPVMPGVNFVEYG 233
+S +HG ++ L+L + +YR + M F Y
Sbjct: 147 ISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRA-DAGMSEEQFSAYC 205
Query: 234 NIEATRKLIQPG-KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
E ++ G T A F+ EP+ G GGI + ++ LL+ DEV G
Sbjct: 206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTG 265
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGS 343
GR G ++ +HYGI PD++T+AK L P+ ++V EKV + G HG
Sbjct: 266 FGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGW 325
Query: 344 TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403
T++G P+ AA+A LD + + + ++ G YF+ L+ +P V +VRG+G++
Sbjct: 326 TYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAA 385
Query: 404 IE----------FDVSAT---PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 450
+E FD + V A + G++ G+++ PPL+++ E D+ V
Sbjct: 386 VEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIV 445
Query: 451 EI 452
I
Sbjct: 446 AI 447
|
Length = 461 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (411), Expect = 6e-45
Identities = 119/405 (29%), Positives = 177/405 (43%), Gaps = 91/405 (22%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLD--LSSGIA 108
++E+ E KKL+ G N RA P + KG LYD +G EY+D S G
Sbjct: 3 KSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPM 62
Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAK---RLVACSFADRVFFSN 162
+ LGH + ++AV++ A + + P ++ELA+ LV + V N
Sbjct: 63 I--LGHAHPEVVEAVIEAAE-----KGLSFGAPTELEVELAELVIELVPS--IEMVRMVN 113
Query: 163 TGTEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGR-------------TMGAL 208
+GTEA +AI+ AR + R K + F +HG T+G
Sbjct: 114 SGTEATMSAIRLARGYTGR-----DK-----IIKFEGCYHGHADSLLVKAGSGAATLGL- 162
Query: 209 ALTSKEHYRSPFEPVMPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGE 258
P PGV +F Y ++EA +L + + AAV VEP+ G
Sbjct: 163 -------------PDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGN 209
Query: 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA 318
G+ FL+ LR+ CD+ GALL+FDEV G R A +YG+ PD+ TL K +
Sbjct: 210 MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIG 268
Query: 319 GGLPIGA----ALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNPAFLASVS 372
GGLP+GA + E++A G T +G+PL A +A L + P F +
Sbjct: 269 GGLPVGAFGGRREIMEQLAPL---GPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELE 325
Query: 373 KKGHYFKETLKQKLARN--PHVKDVRGLGLIIGIEFDVSATPVVD 415
E LK+ + P V +G + G+ F + PV +
Sbjct: 326 ALTKRLAEGLKEAAKKAGIPLT--VNRVGSMFGLFF--TDEPVTN 366
|
Length = 426 |
| >gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 8e-44
Identities = 124/441 (28%), Positives = 218/441 (49%), Gaps = 53/441 (12%)
Query: 59 GRNNKEVMEAEKKLL---VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG 115
G KE++E EK++L +G P+V G G + D +G ++D +G A + G+
Sbjct: 12 GPKAKELIEREKRVLSPGIGV-KLFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYS 70
Query: 116 DADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAI 172
+KAV +Q ++ H Y +S I +A++L S + +V F +G++A + AI
Sbjct: 71 HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAI 130
Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-KEHYRSPFEPVMPGVNFVE 231
K ++ R ++F ++HG+T+GA ++ + + + F P+MP V ++
Sbjct: 131 KVSKFSTRRP---------WILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIP 181
Query: 232 YGN----------IEATRKLIQ----------------PGKTAAVFVEPIQGEGGIYSAT 265
Y N E +LI P + AA+F EPIQG+ GI
Sbjct: 182 YPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPP 241
Query: 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA 325
+ F + L+ D+ G LLV DEVQ G+GRTG +A E + + PD++ K +A G+ +
Sbjct: 242 ENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASGMGLSG 301
Query: 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK 385
+ +++ + G T A +P++ AA A L+ I L + K G + K+ L +
Sbjct: 302 VIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEM 360
Query: 386 LARNPHVKDVRGLGLIIGIEF-DVSATPVVDACR-------DSGLLVLTAGK-GNVVRLV 436
+ DVRG GL+IG+E + P + + GL++ + G GNV+R+
Sbjct: 361 KESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRIT 420
Query: 437 PPLIISEQELDQAVEILCKTL 457
PPL+I+++ ++ +EI+ + +
Sbjct: 421 PPLVITKEIAEKGLEIMERAI 441
|
Length = 457 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 5e-43
Identities = 116/416 (27%), Positives = 178/416 (42%), Gaps = 56/416 (13%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGH------GDADWIKAVVDQANVLTHVSNM 136
L +G L DA +GR YLD+ S A ALG D + + A + SN
Sbjct: 23 LDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAA--VNKPSNS 80
Query: 137 -YYSIPQIELAK---RLVACSFADRVFFSNTGTEANEAAIKFA-----RKFQRHSNPDSK 187
Y++ R++ +FF G A E A+K A R Q P +
Sbjct: 81 DVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAAL 140
Query: 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM----------------PGVNFVE 231
T+ + +FHGR+ L+LT+ + ++ P P ++ V
Sbjct: 141 --GTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVI 198
Query: 232 YGNIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286
EA R+ P A EPIQGEGG EFL+ +R CD+ ALL+FD
Sbjct: 199 ALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFD 258
Query: 287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGD 340
EVQ G+G TG WA++ G+ PDI+ K +AG A V S +N
Sbjct: 259 EVQTGVGLTGTAWAYQQLGVQPDIVAFGKKTQVCGIMAGRRVDEVADNVFAVPSRLN--- 315
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLG 399
ST+ G+ + A +L+ I + + +G + L + A PH V + RG G
Sbjct: 316 --STWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRG 373
Query: 400 LIIGIEFDVSAT--PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453
L+ + +A V+ G+L+L G+ +R PPL ++ +E+D A++ +
Sbjct: 374 LMCAFDLPSTADRDEVIRQLYREGVLLLGCGE-RSIRFRPPLTVTREEIDAAIDAI 428
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 2e-42
Identities = 125/409 (30%), Positives = 198/409 (48%), Gaps = 54/409 (13%)
Query: 86 SGKGCKLYDAEGREYLD-LSSGIAVNAL-GHGDADWIKAVVDQANVLTHVSNMYYSI--- 140
G + +GR +D +SS A AL G+ A +Q ++H+ M+
Sbjct: 32 RADGVMITLKDGRRLIDGMSSWWA--ALHGYNHPRLNAAATNQLAKMSHI--MFGGFTHE 87
Query: 141 PQIELAKRLVAC--SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
P +ELA++L+ +++FF+++G+ A E A+K A ++Q + + + T+F + +
Sbjct: 88 PAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQ-QAKGEVQR--TKFATIRS 144
Query: 199 SFHGRTMGALAL----TSKEHYRSPFEPVM-----PGVNFVEYGNIEATRKLIQP----- 244
+HG T A+++ T + PV P + F E N EA I+P
Sbjct: 145 GYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEA----IEPLQDLL 200
Query: 245 ----GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
+ AA+ +EP+ QG GG+Y + +L R+ CD G LL+FDE+ G GRTG L+
Sbjct: 201 EQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLF 260
Query: 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLVCN 353
A EH G+ PDIM + K L GG L + A + TE +A I G+ HG TF +PL C
Sbjct: 261 ALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACA 320
Query: 354 AAIAVLDKISNPAFLASVSKKGHYFKETLKQKLA---RNPHVKDVRGLGLIIGIEFD--V 408
A + + + ++ + + LKQ+LA V +VR LG I +E V
Sbjct: 321 IAAESIRLLLESPWQQNIQR----IEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV 376
Query: 409 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+ + + G+ V GK +V ++PP IIS EL Q L + L
Sbjct: 377 NMATLQPRFVEHGIWVRPFGK--LVYIMPPFIISPDELSQLTSGLLRVL 423
|
Length = 429 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 116/401 (28%), Positives = 181/401 (45%), Gaps = 45/401 (11%)
Query: 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139
++ S G L +G +D S A GHG A Q + ++HV M+
Sbjct: 22 RNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHV--MFGG 79
Query: 140 I---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPATEF 193
+ P I+L ++L+ + D VF+S++G+ + E AIK A ++ + +P+ T
Sbjct: 80 LTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPER----TRL 135
Query: 194 VSFTNSFHGRTMGALAL-------------TSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
+++ + +HG T A+++ T E +P PV + +
Sbjct: 136 LTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLEL 195
Query: 241 LIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
LI AA+ +EPI QG GG+ ++ +R CD LL+ DE+ G GRTG L+
Sbjct: 196 LID-ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF 254
Query: 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGSPLVC 352
A G+ PDIM + K L GG + A L T+KVA I+ + HG TF +PL C
Sbjct: 255 ATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLAC 314
Query: 353 NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATP 412
A A L+ I + V + L LA P V DVR LG I +E P
Sbjct: 315 AVAHASLEIIETGMWRKQVKRIEAELIAGL-SPLAHLPGVADVRVLGAIGVVEM---EQP 370
Query: 413 V-----VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448
V A D G+ + G+ +V ++PP I + +++ Q
Sbjct: 371 VDMEEATQAAVDHGVWLRPFGR--LVYVMPPYITTSEQIAQ 409
|
Length = 422 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 6e-40
Identities = 115/424 (27%), Positives = 196/424 (46%), Gaps = 52/424 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
P V+ G+G L+D +G+ YLD SG+ LG+G D A Q L + NM++
Sbjct: 37 PRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYY-NMFFHT 95
Query: 141 --PQ-IELAKRLVAC--SFADRVFFSNTGTEANEAAIKFARKF-QRHSNPDSKEPATEFV 194
P IEL++ L + ++N+G+EANE I+ R++ Q P K +
Sbjct: 96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKI----MI 151
Query: 195 SFTNSFHGRTMGALALTSKE--HYRSPFEPVMPGVN----FVEYGNI-----------EA 237
N +HG T+ A AL + H P + ++ + G + +
Sbjct: 152 GRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQL 211
Query: 238 TRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
K+++ G A EP QG GG+ + + ++ C LL DEV G GRT
Sbjct: 212 EEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRT 271
Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASA-INYGD---HGSTFAGSPL 350
G +AHEH+G PD +++AK L G +P+G ++++++A A + G HG T++G P+
Sbjct: 272 GEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPV 331
Query: 351 VCNAAIAVLDKISNPAFLASV-SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-- 407
AIA L + + + V G Y + L++ +P V +V+G GL+ ++F
Sbjct: 332 AAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAED 391
Query: 408 -------VSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+ + CR G +++ + G ++ + P L+ E+D+ V+ KT
Sbjct: 392 KATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMI-MAPALVAGRAEIDELVD---KTR 447
Query: 458 PVLD 461
+D
Sbjct: 448 IAVD 451
|
Length = 460 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-39
Identities = 102/379 (26%), Positives = 163/379 (43%), Gaps = 49/379 (12%)
Query: 62 NKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVNA 111
++ + E K++ G N RA P +A GKG LYD +G EY+D
Sbjct: 2 SENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLI 61
Query: 112 LGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTGTEA 167
LGH ++AV + T Y P +I LAK +++ + V F N+GTEA
Sbjct: 62 LGHAHPRVVEAVKEALERGTS-----YGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEA 116
Query: 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGR--TMGALALTSKEHYRSPFEPVMP 225
+A++ AR + + + F +HG + A + P P +P
Sbjct: 117 TMSAVRLARGYTGRD---------KIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVP 167
Query: 226 G-----VNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD 278
+ Y ++EA ++ + + A V VEP+ G G+ EFL LR ++
Sbjct: 168 EDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEE 227
Query: 279 AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA----ALVTEKVAS 334
G+LL+FDEV G R A E++G+ PD+ TL K + GGLP+GA + E++A
Sbjct: 228 YGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAP 286
Query: 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARN---PH 391
G T +G+PL A +A L + + + E L ++ + PH
Sbjct: 287 EGPVYQAG-TLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGL-SEVLEDTGIPH 344
Query: 392 VKDVRGLGLIIGIEFDVSA 410
V +G + + F
Sbjct: 345 T--VNRVGSMFSLFFTEEE 361
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-33
Identities = 118/423 (27%), Positives = 176/423 (41%), Gaps = 98/423 (23%)
Query: 4 AMSSTFQAPLQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNK 63
A + L S + V+ + A SV + S +
Sbjct: 3 AALAGSALGLSCSAKPSARRSSSQRRRAVRSSVIKMAVSVEEKKKFTTTKS--------E 54
Query: 64 EVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIAVNA 111
E+ +A K+L+ G N RA P+V KG +D +G EY+D S G A+
Sbjct: 55 EIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAI-- 112
Query: 112 LGHGDADWIKAVVDQA-------------NVLTHVSNMYYSIPQIELAKRLVACSFADRV 158
+GH D + + A+ + NVL + + ++P +E+ V
Sbjct: 113 IGHADDEVLAALAETMKKGTSFGAPCLLENVLAEM--VIDAVPSVEM------------V 158
Query: 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGAL 208
F N+GTEA ++ AR + +E + + F +HG + L
Sbjct: 159 RFVNSGTEACMGVLRLARAYT------GRE---KIIKFEGCYHGHADSFLVKAGSGVATL 209
Query: 209 ALTSKEHYRSPFEPVMPGVN--------FVEYGNIEATRKLIQ--PGKTAAVFVEPIQGE 258
L P PGV Y ++EA +KL + G+ AAV +EP+ G
Sbjct: 210 GL-----------PDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGN 258
Query: 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA 318
G KEFL+ LR+ + GALLVFDEV G R Y A E++GI PD+ TL K +
Sbjct: 259 SGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIG 317
Query: 319 GGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA---FLASV 371
GGLP+GA + E VA A G T +G+PL A I L ++ P +L +
Sbjct: 318 GGLPVGAYGGRREIMEMVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLQQPGTYEYLDKI 376
Query: 372 SKK 374
+KK
Sbjct: 377 TKK 379
|
Length = 474 |
| >gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-32
Identities = 115/425 (27%), Positives = 184/425 (43%), Gaps = 62/425 (14%)
Query: 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN 135
Y P + G L+D GR YLD+ + + V LGHG A Q ++L S
Sbjct: 563 HYYADPPQIERGWRHHLFDMAGRSYLDMVNNVTV--LGHGHPRLAAAAARQWSLLNTNSR 620
Query: 136 MYY-SIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+Y ++ E ++RL A + D VF N+G+EAN+ AI+ A S +
Sbjct: 621 FHYAAV--AEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWA---ASG------RRD 669
Query: 193 FVSFTNSFHGRTMGALAL---------------------TSKEHYRSPFEPVMPGVNFVE 231
VS ++HG T+ A+ S YR F ++V
Sbjct: 670 VVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVR 729
Query: 232 YGNIEATRK---LIQPGKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
+ + L G+ A F+ EP+ G G + +LQ + A G + + DE
Sbjct: 730 ----DVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADE 785
Query: 288 VQCGLGRTG-YLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFA 346
VQ G GR G Y W E G+ PDI+T+AK + G P+GA + ++A A G F+
Sbjct: 786 VQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAEA--LEAEGYFFS 843
Query: 347 ---GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403
GSP+ C +AVLD + + + G + K L+ R+P + V G+GL +G
Sbjct: 844 STGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLG 903
Query: 404 IEFDV----------SATPVVDACRDSGLLVLTAGKG-NVVRLVPPLIISEQELDQAVEI 452
+E + D + G+++ G N++++ PPL + + D V++
Sbjct: 904 VELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDM 963
Query: 453 LCKTL 457
L + L
Sbjct: 964 LDRVL 968
|
Length = 972 |
| >gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-32
Identities = 118/425 (27%), Positives = 175/425 (41%), Gaps = 65/425 (15%)
Query: 89 GCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAK 147
G L D +G LDL S I+ +G+ + +KA T ++ P + AK
Sbjct: 49 GNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAK 108
Query: 148 RL------VACSFADRVFFSNTGTEANEAAIKFA----RKFQRHSNPD-SKE-------- 188
L VA D+V+ +G++ANE A K A R QR D S+E
Sbjct: 109 ILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDN 168
Query: 189 -----PATEFVSFTNSFHGRTMGALALT-SKEHYR----------SPFEPV-MPGVNFVE 231
P +SF +FHGR G+L+ T SK ++ +PF + P V+
Sbjct: 169 QAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVK 228
Query: 232 YGNIEATRKLIQ--------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALL 283
E R L + AA+ VEPIQ EGG A+ +F + LRD
Sbjct: 229 ENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAF 288
Query: 284 VFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH 341
+ DEVQ G+G TG WAHEH+ + PD++T +K G Y
Sbjct: 289 IVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTA---GYFFHDPAFRPNKPY-RQ 344
Query: 342 GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKDVRGLGL 400
+T+ G P ++ +I L +V+ G Y L+ + P ++++RG G
Sbjct: 345 FNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGR 404
Query: 401 IIGIEFDVSATPVVDACRDSGLLVLTAGKG--------NVVRLVPPLIISEQELDQAVEI 452
I +D TP +A RD LL G +RL P L+ + D +EI
Sbjct: 405 GTFIAWD---TP-DEAKRDK-LLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEI 459
Query: 453 LCKTL 457
+ K +
Sbjct: 460 ISKII 464
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-27
Identities = 97/334 (29%), Positives = 148/334 (44%), Gaps = 42/334 (12%)
Query: 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139
APVV+ GKG YD +G +Y+D + GH KA+ + A + + Y
Sbjct: 35 APVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAE-----NGVLYG 89
Query: 140 IP---QIELAKRL-VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P +IE AK L A ++V F N+GTEA I+ AR + T+ +
Sbjct: 90 TPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGR---------TKIIK 140
Query: 196 FTNSFHGRT--------MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--G 245
F +HG + G L + + P + + V V + +IEA ++ +
Sbjct: 141 FAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVP-KSIAQEVITVPFNDIEALKEALDKWGD 199
Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
+ AAV VEPI G GI FL+ + + +AGAL+++DEV R Y A + G
Sbjct: 200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLG 258
Query: 306 IFPDIMTLAKPLAGGLPIGA----ALVTEKVA---SAINYGDHGSTFAGSPLVCNAAIAV 358
+ PD+ L K + GGLPIGA + E+VA A G T AG+P A IA
Sbjct: 259 VEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAG----TMAGNPASMAAGIAC 314
Query: 359 LDKISNPAFLASVSKKGHYFKETLKQKLARNPHV 392
L+ + + + G +E + + A +
Sbjct: 315 LEVLQQEGVYEKLDRLGAMLEEGI-LEAAEKHGI 347
|
Length = 428 |
| >gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 4e-21
Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 48/271 (17%)
Query: 76 TYNR--------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA 127
TY + AP + G G ++D +G EY++ G+ LGH ++AV +
Sbjct: 18 TYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREA- 76
Query: 128 NVLTHVSNMYY-SIPQIELAKRLVA-CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPD 185
L N S +++ A+ + AD V F G++A AA++ AR + + D
Sbjct: 77 --LQDGCNFTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAY---TGRD 131
Query: 186 -----SKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
+ P F S + F G T + + + + V F Y +I +
Sbjct: 132 LVARCADHP---FFSTDDWFIGTTPMSAGIPASVSALT--------VTF-RYNDIASLEA 179
Query: 241 LIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
L + PG+ A V +EP + FL +R C + GAL + DE+ TG+
Sbjct: 180 LFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMI-----TGFR 230
Query: 299 W----AHEHYGIFPDIMTLAKPLAGGLPIGA 325
W A + YGI PD+ K L G + A
Sbjct: 231 WHMRGAQKLYGIVPDLSCFGKALGNGFAVSA 261
|
Length = 431 |
| >gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 5e-16
Identities = 81/316 (25%), Positives = 121/316 (38%), Gaps = 58/316 (18%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA-NVLTHVSNMYYS 139
P+ +A +G + D +G Y D G GH A +A+ +QA LT M S
Sbjct: 58 PLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTT---MLPS 114
Query: 140 IPQIELAKRLVACSFADRVF------FSNTGTEANEAAIKFARKF-QR----------HS 182
+ + L A R F + T T+AN +++AR R H
Sbjct: 115 EDAAWVGEEL-----ARR-FGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHG 168
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
D FV + GR + L + H + V VE+ ++ A +
Sbjct: 169 TVDDV-----FVDLVD---GRPVQRPGLLGQVHDLTATTRV------VEFNDLAALEAAL 214
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE---VQCGLGRTGYLW 299
G AAV EP G+ F + LR+ G LLV DE + G G GY
Sbjct: 215 ADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPG--GYTR 272
Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN------YGDH---GSTFAGSPL 350
AH G+ PD + + KP+AGG+P + ++A H G+T + + L
Sbjct: 273 AH---GLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANAL 329
Query: 351 VCNAAIAVLDKISNPA 366
A A L ++ A
Sbjct: 330 AMAAMRATLAEVMTEA 345
|
Length = 453 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 9e-16
Identities = 68/225 (30%), Positives = 97/225 (43%), Gaps = 22/225 (9%)
Query: 243 QPGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301
+ G AA+ +EP + G GG+ F + L C ++FDEV GL R G A
Sbjct: 581 KNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAW 640
Query: 302 EHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGD-------HGSTFAGSPLVCN 353
E G PDI AK L GGL P+ A L TE+V A G HG ++ P+ C
Sbjct: 641 ELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAF-RGPSKLDALLHGHSYTAHPMGCA 699
Query: 354 AAIAVL----DKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS 409
AA L D +NP + S+ + E L + ++ P+V+ V LG ++ +E D
Sbjct: 700 AAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAE 759
Query: 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454
S L + V RL I + L V ++C
Sbjct: 760 G----SGSGYSSL----YARSVVRRLRREDGIYARPLGNVVYLMC 796
|
Length = 817 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-11
Identities = 37/172 (21%), Positives = 54/172 (31%), Gaps = 24/172 (13%)
Query: 144 ELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFH 201
EL ++L + D+ F +GT ANEAA+ P E + N
Sbjct: 4 ELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG-----------PGDEVIVDANGHG 52
Query: 202 GRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGI 261
R A L + PV I +L A + + P GG+
Sbjct: 53 SRYWVAAELAG---AKPVPVPVDDAGYGGLDVAIL--EELKAKPNVALIVITPNTTSGGV 107
Query: 262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313
KE +R + G LL+ D G G D++T
Sbjct: 108 LVPLKE----IRKIAKEYGILLLVDAASAGGASPA-PGVLIPEG-GADVVTF 153
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 72/307 (23%), Positives = 113/307 (36%), Gaps = 38/307 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
P +++S G D+ G+ ++D GH A+ Q S S
Sbjct: 36 PPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAI--QQGAERGTSYGLTSE 93
Query: 141 PQIELAKRLVAC-SFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
+I A+ L + D ++ F ++GTEA A++ AR S + F
Sbjct: 94 QEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRS---------IIIKFLG 144
Query: 199 SFHGRTMGALALTSKEH-------YRSPFEPVMPGVNFVEYGNIEATRKLI-QPG-KTAA 249
+HG L S + + P + Y + + + ++ G + A
Sbjct: 145 CYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAG 204
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
V EPI G+ F++ + C G+L + DEV G R A Y + PD
Sbjct: 205 VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPD 263
Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDH---------GSTFAGSPLVCNAAIAVLD 360
I K L GGLP AA+V K + DH T +G+PL A A ++
Sbjct: 264 ITVYGKILGGGLPA-AAVVAHK-----SIMDHLAPEGTIFQAGTLSGNPLAMAAGKASIN 317
Query: 361 KISNPAF 367
F
Sbjct: 318 LCREQGF 324
|
Length = 433 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 141 PQIELAKRLVA---CSFADRVFFSNTGTEANEAAIKFA-RKF---QRHSNPDSKEPATE- 192
P + A+ L+ +A RVFFS+ G+ A E A+K A RKF E
Sbjct: 410 PALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGD 469
Query: 193 -----FVSFTNSFHGRTMGALALTSKEHYRSP 219
++ S+HG T+GA+ + +
Sbjct: 470 LIELKVLALDGSYHGDTLGAMEAQAPSVFTGF 501
|
Length = 817 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 100.0 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.98 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.97 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.97 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.97 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK07324 | 373 | transaminase; Validated | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.96 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.96 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.96 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.96 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.96 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.96 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.96 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.96 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.96 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PLN02187 | 462 | rooty/superroot1 | 99.96 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.96 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.96 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.96 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.96 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.96 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.96 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.96 | |
| PLN02656 | 409 | tyrosine transaminase | 99.96 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.96 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.96 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.96 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.96 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.96 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.96 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.96 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.95 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.95 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.95 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.95 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.95 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.95 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.95 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.95 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.95 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.95 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.95 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.95 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.95 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.95 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.95 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.95 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.95 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.95 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.95 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.94 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.94 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.94 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.94 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.94 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.94 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.94 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.94 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.94 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.94 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.94 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.94 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.94 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.94 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.94 | |
| PLN02721 | 353 | threonine aldolase | 99.93 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.93 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.93 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.93 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.93 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.93 | |
| PLN02231 | 534 | alanine transaminase | 99.93 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.93 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.93 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.92 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.92 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.92 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.92 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.92 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.92 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.92 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.92 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.92 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.92 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.92 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.92 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.91 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.91 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.91 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.91 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.91 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.91 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.9 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.9 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.9 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.9 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.89 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.89 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.89 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.89 | |
| PLN02368 | 407 | alanine transaminase | 99.89 | |
| PLN02397 | 423 | aspartate transaminase | 99.88 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.88 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.88 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.88 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.88 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.87 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.87 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.87 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.86 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.86 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.85 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.85 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.85 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.85 | |
| PLN02651 | 364 | cysteine desulfurase | 99.85 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.84 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.83 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.83 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.83 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.83 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.82 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.82 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.82 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.81 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.8 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.8 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.8 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.79 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.79 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.79 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.79 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.79 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.79 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.78 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.78 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.78 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.78 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.78 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.77 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.76 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.76 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.76 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.76 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.76 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.76 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.76 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.76 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.76 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.76 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.76 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.76 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.75 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.75 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.75 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.75 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.74 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.74 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.74 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.73 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.73 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.73 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.73 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.72 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.71 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.71 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.71 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.71 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.7 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.7 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.7 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.68 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.68 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.68 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.68 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.67 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.67 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.67 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.67 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.66 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.65 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.65 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.65 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.65 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.64 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.64 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.62 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.62 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.62 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.61 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.6 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.59 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.59 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.59 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.59 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.58 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.55 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.55 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.55 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.55 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.54 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.54 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.54 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.53 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.53 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.52 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.52 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.51 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.51 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.51 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.5 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.5 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.46 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.45 | |
| PLN02263 | 470 | serine decarboxylase | 99.44 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.39 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.38 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.37 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.33 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.31 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.29 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.29 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.27 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.24 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.22 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.2 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.19 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.15 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.15 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.11 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.08 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.07 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.06 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.04 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.99 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.91 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.89 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.82 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.77 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.75 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.75 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.74 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.74 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.72 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.61 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.51 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.45 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.41 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.4 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.38 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.36 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.35 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.34 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.15 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.03 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 97.93 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 97.76 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.47 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 97.43 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 97.14 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 97.06 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 95.02 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 93.43 |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-86 Score=625.98 Aligned_cols=394 Identities=51% Similarity=0.858 Sum_probs=375.4
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 012368 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (465)
.+...++...++..+.|.+.|+++++|+|+|+||.+|++||||.+++++++|||+||.+++|+.+|++++.+.++.+.++
T Consensus 5 ~~~~~~~~~~~~~~~~Y~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~ 84 (404)
T COG4992 5 LTAATIELFMKYLMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNE 84 (404)
T ss_pred cHHHHHHHHHHhhhcccCcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCCh
Confidence 45566777788899999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 141 PQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 141 ~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
+..+|+++|++..+ .++|+|+|||+|||+.|+|+||.|++ + +.+.+||.|.++|||.|.+++++++.+.|+.+
T Consensus 85 ~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~--~----~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~ 158 (404)
T COG4992 85 PQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTG--D----PEKSKIIAFENSFHGRTLGALSATGQPKYRKG 158 (404)
T ss_pred HHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcC--C----CCCcEEEEEcCCcCCccceeeeccCChhhccC
Confidence 99999999999997 99999999999999999999999986 1 14779999999999999999999999999999
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
|.|+.+++.++||||++++++++++ ++++||+||+|+++|+++++++||++++++|++||++||+||||||+||+|++|
T Consensus 159 F~Pl~~g~~~vpfnDi~al~~ai~~-~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~f 237 (404)
T COG4992 159 FGPLLPGFRHVPFNDIEALEAAIDE-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF 237 (404)
T ss_pred CCCCCCCceecCCCCHHHHHHHhcc-CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHH
Confidence 9999999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012368 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
+++++++.|||+|++|++|||+|+|++++++.+.+.+.++.|++||++||++|+++.++|+++.++++.+++++++++|+
T Consensus 238 A~e~~gV~PDI~tlaK~LgGG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~ 317 (404)
T COG4992 238 AYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLL 317 (404)
T ss_pred HHHHhCCCCCEEEeeccccCCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEecCC--hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDVS--ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~--~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++|+++..++|.+..+||.|+|+++++..+ +..+.+.|.++||++.+.+. +++||.||+.++++|+++++++|++++
T Consensus 318 ~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~~a~~~~~~~~~~gvL~~~a~~-~ViR~~PpL~i~~eei~~~~~~l~~~l 396 (404)
T COG4992 318 QRLRELKRRYPLVKEVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPAGP-NVIRFLPPLVITEEEIDEALDALERAL 396 (404)
T ss_pred HHHHHHhhcCCceeeeecceeEEEEEecCcccHHHHHHHHHHCCeEEecCCC-CeEEecCCccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999544 78999999999999999887 899999999999999999999999999
Q ss_pred HHhhh
Q 012368 458 PVLDS 462 (465)
Q Consensus 458 ~~~~~ 462 (465)
..+..
T Consensus 397 ~~~~~ 401 (404)
T COG4992 397 AAASA 401 (404)
T ss_pred HHhhh
Confidence 87653
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-76 Score=578.25 Aligned_cols=390 Identities=43% Similarity=0.740 Sum_probs=351.0
Q ss_pred chHHHHHHHHhccccccCC--CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC
Q 012368 61 NNKEVMEAEKKLLVGTYNR--APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~--~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~ 138 (465)
...++++++.++..++|.. .|++++|++|+|+||+|||+||||.++.++.++||+||.|++|+.+|++++.+....+.
T Consensus 17 ~~~~~~~r~~~~~~r~~~~~~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~ 96 (447)
T COG0160 17 KALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDL 96 (447)
T ss_pred chHHHHHHHHHHhccccccccCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCcc
Confidence 5566777777777777766 79999999999999999999999999999999999999999999999999876655444
Q ss_pred C-HHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC
Q 012368 139 S-IPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (465)
Q Consensus 139 ~-~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (465)
. +...+++++|.+..+ .++++|+|||+|||++|+|+|+.+|+ +..||.|..+|||.|.+++++++..
T Consensus 97 ~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tg---------r~~viaf~~afHG~T~galslT~~~ 167 (447)
T COG0160 97 YYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTG---------RPGVIAFDGAFHGRTLGALSLTGSK 167 (447)
T ss_pred cchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhC---------CCcEEEECCcccccchhhHHhccCc
Confidence 4 889999999999886 57899999999999999999999996 8899999999999999999998765
Q ss_pred CcC-CCCCCCCCCceEeeCCC-----------------HHHHHhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHHH
Q 012368 215 HYR-SPFEPVMPGVNFVEYGN-----------------IEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQF 271 (465)
Q Consensus 215 ~~~-~~~~~~~~~~~~~~~~d-----------------~~~le~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~~ 271 (465)
... ..+.+..+++..+|+++ .+.+++.+. ..++|++|+||+|++||.+++|++|+++
T Consensus 168 ~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~ 247 (447)
T COG0160 168 PPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKA 247 (447)
T ss_pred cccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHH
Confidence 433 44667777787777653 244666443 4579999999999999999999999999
Q ss_pred HHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHH
Q 012368 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLV 351 (465)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~ 351 (465)
|+++|++||+++|+||||+||||||++|+++++++.|||+|+||++++|+|+|++++++++++ ..++.+.+||.+||++
T Consensus 248 l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva 326 (447)
T COG0160 248 LRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPVA 326 (447)
T ss_pred HHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cCCcccCCCCCcCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 7778899999999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC------C----hHHHHHHHHHCC
Q 012368 352 CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV------S----ATPVVDACRDSG 421 (465)
Q Consensus 352 ~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~------~----~~~~~~~l~~~G 421 (465)
|+|+.++|+.++++++.++..+.+++++++|.++.+++|.+.++||.|+|+++++.. + ..+++..|+++|
T Consensus 327 ~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~G 406 (447)
T COG0160 327 CAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERG 406 (447)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999899999999999999999999999999999999999999999921 2 356888999999
Q ss_pred ceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 422 LLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 422 v~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+++..+|. ++++||.||++++++++|+++++|+++++++
T Consensus 407 lil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 407 LLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred CEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 99988874 6999999999999999999999999999764
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-74 Score=551.17 Aligned_cols=399 Identities=26% Similarity=0.382 Sum_probs=350.8
Q ss_pred hhccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHH
Q 012368 39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD 118 (465)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~ 118 (465)
...|.++ |++|++++|||+++++|.+. +....|+++++++|+++||+|||+||||+++|+++.|||+||.
T Consensus 4 ~~~S~~l-~~~A~~~~pGGvnspvra~~---------~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~ 73 (432)
T COG0001 4 FPKSEAL-FERAKKVIPGGVNSPVRAFK---------SVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPA 73 (432)
T ss_pred ccchHHH-HHHHhhhCCCCCCccccccC---------CCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHH
Confidence 3577788 99999999999999999765 2234899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 012368 119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197 (465)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~ 197 (465)
|++|+.++++++.. .+.+++.+.++++.|.++++ .|+|.|+||||||++.|+|+||.||+ |++||.|+
T Consensus 74 V~~Av~~~l~~G~~--fg~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~Tg---------R~kIikF~ 142 (432)
T COG0001 74 VVEAVQEQLERGLS--FGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTG---------RDKIIKFE 142 (432)
T ss_pred HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhC---------CCeEEEEc
Confidence 99999999998644 45678889999999999998 69999999999999999999999996 99999999
Q ss_pred CCcccCccccccccC--CCCcCCCCC-----CCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHH
Q 012368 198 NSFHGRTMGALALTS--KEHYRSPFE-----PVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEF 268 (465)
Q Consensus 198 ~~yhg~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~ 268 (465)
++|||+.+..+.-.+ ...+..+-. .....+..+||||+++++++++ ++++|+||+||+.+|.|+++|.++|
T Consensus 143 G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~F 222 (432)
T COG0001 143 GCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGF 222 (432)
T ss_pred CCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHH
Confidence 999999998876322 221111111 1122346889999999999998 4689999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC---CCcCCC
Q 012368 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTF 345 (465)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~ 345 (465)
|++|+++|++||++||+|||+||| |.+..+++.++++.||+.||||.+|||+|+|++.+++++|+.+.+. .+.+|+
T Consensus 223 l~~Lr~lt~e~G~lLI~DEViTGF-R~~~gGaq~~~gi~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~ 301 (432)
T COG0001 223 LEGLRELTEEHGALLIFDEVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTL 301 (432)
T ss_pred HHHHHHHHHHcCcEEEEecchhhc-ccCCcccccccCcCcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCC
Confidence 999999999999999999999999 8777889999999999999999999999999999999999988763 688999
Q ss_pred CChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------------C
Q 012368 346 AGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------------S 409 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------------~ 409 (465)
++||++++|+.++|+.+.+ +..++++.+.+++|++.|++.+.+++....+...|.++.+.|.. .
T Consensus 302 sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~ 381 (432)
T COG0001 302 SGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVER 381 (432)
T ss_pred CCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHH
Confidence 9999999999999999876 46899999999999999999999998888899999999998831 1
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
..++.+.|+++||++.|+.. -.+.++..||+++|++.+++++++++++..
T Consensus 382 ~~~~~~~~l~~GV~l~ps~~---ea~flS~ahte~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 382 FAKFFHHLLNRGVYLAPSQF---EAGFLSTAHTEEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred HHHHHHHHHhCCcccCCccc---cceeeecccCHHHHHHHHHHHHHHHHHhhc
Confidence 34567789999999999864 234568899999999999999999988764
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-74 Score=517.26 Aligned_cols=394 Identities=37% Similarity=0.602 Sum_probs=363.4
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 012368 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (465)
.++..++++.++..++|+|.|+++.+++|+++||.+|++|+||.+++++++.|||||.|.+|+.+|.++++..+..+.+.
T Consensus 22 aS~~~~~~E~k~~ahnyhpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssrafYnd 101 (427)
T KOG1402|consen 22 ASQQIMERENKYGAHNYHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRAFYND 101 (427)
T ss_pred chhhhhchhhhcccccCCcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHHHhhh
Confidence 45557788889999999999999999999999999999999999999999999999999999999999877666667777
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcC--CCCCCCCceEEEEcCCcccCccccccccCCCCcCC
Q 012368 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSN--PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~--~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (465)
...++++.+.+.++.++|+-+|+|.||++.|++++|.+.-... |+ .+.+|+...++|||.+.+++++++++....
T Consensus 102 ~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~---nka~il~~~~nFhGrT~~ais~s~d~ds~~ 178 (427)
T KOG1402|consen 102 VLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPK---NKAKILSAENNFHGRTLGAISLSTDPDSWD 178 (427)
T ss_pred hHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCc---cceeEEEecccccCceeeeEEecCCcchhh
Confidence 8899999999999999999999999999999999997653221 22 356789999999999999999998886666
Q ss_pred CCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc
Q 012368 219 PFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297 (465)
Q Consensus 219 ~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~ 297 (465)
.|.|..|+ +..+||+|.++|+.+++...++++++||+|+++|+++|+++||+++++||++|++++|.||||||+||+|+
T Consensus 179 ~fgp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk 258 (427)
T KOG1402|consen 179 GFGPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK 258 (427)
T ss_pred ccCCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc
Confidence 78888888 78999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 012368 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGH 376 (465)
Q Consensus 298 ~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~ 376 (465)
++++++.++.||++.|+|+++|| +|++++++++++|..+.++.|++||++||++++++.|+|+++.++.+.++.+.++.
T Consensus 259 ~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~ 338 (427)
T KOG1402|consen 259 LLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGE 338 (427)
T ss_pred EEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC-CceeeeccceEEEEEec------CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHH
Q 012368 377 YFKETLKQKLARNP-HVKDVRGLGLIIGIEFD------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 377 ~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~ 449 (465)
.++.+|.++..++| .+..++|+|++..+.+. .++..++-.|.++|++..|.+. +.+||.||+.++++|+++.
T Consensus 339 ~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~-~IiRfaPPL~I~e~dl~eg 417 (427)
T KOG1402|consen 339 ILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHG-NIIRFAPPLVISEEDLREG 417 (427)
T ss_pred HHHHHHHhccccccchhheeeccceEEEEEeccccccchhHHHHHHcccccccccCCCCC-CeEEecCCcccCHHHHHHH
Confidence 99999999988887 57889999999999983 3466788888899999998875 8999999999999999999
Q ss_pred HHHHHHHHH
Q 012368 450 VEILCKTLP 458 (465)
Q Consensus 450 l~~l~~~l~ 458 (465)
+++|.+++.
T Consensus 418 ~e~i~k~i~ 426 (427)
T KOG1402|consen 418 IEAIEKTIA 426 (427)
T ss_pred HHHHHHHhc
Confidence 999998764
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-70 Score=530.62 Aligned_cols=390 Identities=38% Similarity=0.637 Sum_probs=343.1
Q ss_pred HHhccccccCC------CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHH
Q 012368 69 EKKLLVGTYNR------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSIP 141 (465)
Q Consensus 69 ~~~~~~~~~~~------~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~ 141 (465)
+.++.|++|.. .|.++++++|.|+||.|||+|||..|++|++++||++|+|.+|+.+|++++.+. ...+.+.+
T Consensus 9 d~~~~whP~t~~~~~~~~~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P 88 (449)
T COG0161 9 DLSHLWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEP 88 (449)
T ss_pred hhhheeccccccccccccceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCch
Confidence 45566765542 278999999999999999999999999999999999999999999999998776 33455666
Q ss_pred HHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcC-
Q 012368 142 QIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR- 217 (465)
Q Consensus 142 ~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~- 217 (465)
..+|+++|++..+ .++|+|++|||||++.|+|++++|...++++ .|.++|....+|||.+.+++++++.....
T Consensus 89 a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p---~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~ 165 (449)
T COG0161 89 AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQP---QRKKFISRRNGYHGDTLGAMSVGGPVALRH 165 (449)
T ss_pred HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCC---cceEEEEeccCcCcccchheeccCchhhhh
Confidence 9999999999987 7899999999999999999999999877765 47889999999999999999999843333
Q ss_pred CCCCCCCCCceEeeCC-----------------CHHHHHhhcC---CCCeEEEEEcccCCC-CCcccCCHHHHHHHHHHH
Q 012368 218 SPFEPVMPGVNFVEYG-----------------NIEATRKLIQ---PGKTAAVFVEPIQGE-GGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 218 ~~~~~~~~~~~~~~~~-----------------d~~~le~~l~---~~~~a~vi~ep~~~~-~G~~~~~~~~l~~l~~l~ 276 (465)
..+.++.+++.++|.+ ..++||++|. ++++++||+||+.+. ||+++|++.||++++++|
T Consensus 166 ~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC 245 (449)
T COG0161 166 AFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREIC 245 (449)
T ss_pred hhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHH
Confidence 3344444544433322 1566788776 378999999998777 999999999999999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-----CCcCCCCChHH
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPL 350 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~ 350 (465)
++||++||+|||.|||||+|++|++++++++|||+|++|++++| +|+|++++++++.+.+... .|+.||++||+
T Consensus 246 ~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPl 325 (449)
T COG0161 246 DKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPL 325 (449)
T ss_pred HHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHH
Confidence 99999999999999999999999999999999999999999999 8999999999999888653 58999999999
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe--cCC---------hHHHHHHHHH
Q 012368 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVS---------ATPVVDACRD 419 (465)
Q Consensus 351 ~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~--~~~---------~~~~~~~l~~ 419 (465)
+|+||++.|++++++++.+++++.+.++.+.|++++.++|.+.++|+.|++..+++ +.. ...+.+.+++
T Consensus 326 acAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e 405 (449)
T COG0161 326 ACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALE 405 (449)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999997778899999999999999999 222 4467888899
Q ss_pred CCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 420 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 420 ~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+|++++|.+ +.+-++||+++|++||+++++++.+++++..++
T Consensus 406 ~Gl~iRp~g--~~i~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 406 RGLLIRPLG--DVIYLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred CCeEEeecC--CEEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999985 789999999999999999999999999877654
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-69 Score=546.83 Aligned_cols=380 Identities=27% Similarity=0.482 Sum_probs=332.5
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHHhhcC--C
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~--~ 155 (465)
.|+++++++|+++||.|||+||||.++++++++||+||+|.+|+.+|++++.+.. ..+.++...+|+++|++..+ .
T Consensus 32 ~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~ 111 (461)
T PRK07482 32 PGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGM 111 (461)
T ss_pred CCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCc
Confidence 4799999999999999999999999999999999999999999999999875432 24667889999999999885 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC--
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-- 233 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (465)
++|+|++||+||++.|+|+|+.|+..++.. +|.+||.++++|||++.+++++++.+.++..+.+..+++.+++++
T Consensus 112 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~---~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (461)
T PRK07482 112 SKVYYGLSGSDANETQIKLVWYYNNVLGRP---EKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHY 188 (461)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCcc
Confidence 899999999999999999999887433221 478999999999999999998887666555555555555444322
Q ss_pred ----------------CHHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC
Q 012368 234 ----------------NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294 (465)
Q Consensus 234 ----------------d~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr 294 (465)
+++++++++. ++++++||+||+++++|+++++++|+++|+++|++||++||+|||+|||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGR 268 (461)
T PRK07482 189 YRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGR 268 (461)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Confidence 3577888884 357999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCcccEEEecccCCCcc-ceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 295 TGYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 295 ~g~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
+|.+|+++++++.||++|+||+++||+ |+|++++++++++.+.. ..|++||++||++|+|++++|+.+++++
T Consensus 269 tG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~ 348 (461)
T PRK07482 269 LGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILEREN 348 (461)
T ss_pred CcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999995 99999999999887752 2478999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--C-----------hHHHHHHHHHCCceEeecCCCCEE
Q 012368 367 FLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--S-----------ATPVVDACRDSGLLVLTAGKGNVV 433 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~-----------~~~~~~~l~~~Gv~v~~~~~~~~l 433 (465)
++++++++++++++.|+++..++|.+..++|.|+|+++++.. . ...+...|+++||++.+...++++
T Consensus 349 l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i 428 (461)
T PRK07482 349 LVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDIL 428 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCCCCEE
Confidence 999999999999999999999999999999999999999931 0 246788899999998654224789
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 434 RLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 434 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
|+.||+++|++||++++++|+++++++.+
T Consensus 429 ~~~Ppl~it~~ei~~~~~~l~~~l~~~~~ 457 (461)
T PRK07482 429 GFAPPLVLTRAEADEIVAIAKDAVDEVLG 457 (461)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987644
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-69 Score=545.43 Aligned_cols=381 Identities=32% Similarity=0.510 Sum_probs=330.9
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC--C
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~--~ 155 (465)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+.+++..+|+++|++..+ .
T Consensus 28 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 107 (459)
T PRK05965 28 GVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSL 107 (459)
T ss_pred CCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCc
Confidence 47899999999999999999999999999999999999999999999998655332 3557778999999999885 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC---
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--- 232 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 232 (465)
++|+|++||+||++.|+|+||.|+..++.+ ++.+||.++++|||++.+++++++.+.+...+.+..+++.++|+
T Consensus 108 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~---~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~ 184 (459)
T PRK05965 108 NHVYFTLGGSDAVDSAVRFIRHYWNATGRP---SKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYP 184 (459)
T ss_pred CEEEEeCChhHHHHHHHHHHHHHHHhcCCC---CccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcc
Confidence 899999999999999999999997533322 47889999999999998888887765555455444444444332
Q ss_pred ------CC--------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 233 ------GN--------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 233 ------~d--------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
+| ++++++++. ++++++||+||+++++|+++++++|+++|+++|++||++||+|||+|||||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRt 264 (459)
T PRK05965 185 YRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRT 264 (459)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccC
Confidence 23 256788775 2579999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
|.+|+++++++.|||+|+||+++|| +|+|++++++++++.+.. ..|++||++||++|+|++++|++++++++
T Consensus 265 G~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l 344 (459)
T PRK05965 265 GPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGL 344 (459)
T ss_pred chhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 9999999999999999999999999 599999999999988753 24789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--C------C-----hHHHHHHHHHCCceEeecCCCCEEE
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--V------S-----ATPVVDACRDSGLLVLTAGKGNVVR 434 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~------~-----~~~~~~~l~~~Gv~v~~~~~~~~lR 434 (465)
.++++++++++++.|+++. ++|.+..++|.|+++++++. . . ...+...|+++||++.+.+. +++|
T Consensus 345 ~~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~-~~i~ 422 (459)
T PRK05965 345 LANGQKAGPRFAAGLDALR-AHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFGD-GVLG 422 (459)
T ss_pred HHHHHHHHHHHHHHHHhhc-cCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecCC-cEEE
Confidence 9999999999999999874 68889999999999999982 1 0 24577888999999988664 7899
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHhhhcCC
Q 012368 435 LVPPLIISEQELDQAVEILCKTLPVLDSNSN 465 (465)
Q Consensus 435 i~~~~~~t~e~i~~~l~~l~~~l~~~~~~~~ 465 (465)
++||+++|++||++++++|++++.++..+||
T Consensus 423 ~~PpL~it~~ei~~~~~~l~~~l~~~~~~~~ 453 (459)
T PRK05965 423 FAPALCCTEGEFDLIFERTRKTLDDVLADPD 453 (459)
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999998876654
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-69 Score=542.42 Aligned_cols=379 Identities=34% Similarity=0.583 Sum_probs=332.0
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeE
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRV 158 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v 158 (465)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+....+.++...+|+++|++..+ .++|
T Consensus 29 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v 108 (451)
T PRK07678 29 ATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLTQSHEPAIKLAEKLNEWLGGEYVI 108 (451)
T ss_pred CCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHHhCCCCCEE
Confidence 389999999999999999999999999999999999999999999999987654444567788999999999886 5699
Q ss_pred EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC----
Q 012368 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN---- 234 (465)
Q Consensus 159 ~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---- 234 (465)
+|++||+||++.|+|+||.||+.++.+ ++.+||.++++|||++.+++++++...++..+.|..+++..+|+++
T Consensus 109 ~f~~sGseA~e~AlklAr~~t~~~g~~---~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (451)
T PRK07678 109 FFSNSGSEANETAFKIARQYHAQKGEP---HRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRM 185 (451)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccc
Confidence 999999999999999999998543321 4788999999999999999998877665555666666666555432
Q ss_pred -------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc
Q 012368 235 -------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298 (465)
Q Consensus 235 -------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~ 298 (465)
++.++++++ ++++++||+||+++++|+++|+++|+++|+++|++||++||+|||+|||||+|.+
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 265 (451)
T PRK07678 186 PGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKA 265 (451)
T ss_pred cccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchh
Confidence 233566674 4689999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC------CCCcCCCCChHHHHHHHHHHHHHhcCchHHHHH
Q 012368 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371 (465)
Q Consensus 299 ~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~ 371 (465)
|+++++++.||++|+||+++|| +|+|++++++++++.+.+ ..|++||++||++|+|++++|++++++++++++
T Consensus 266 ~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~ 345 (451)
T PRK07678 266 FGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERS 345 (451)
T ss_pred HHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 8899999999999999999998 799999999999998864 247899999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--------C---hHHHHHHHHHCCceEeecCC-----CCEEEE
Q 012368 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--------S---ATPVVDACRDSGLLVLTAGK-----GNVVRL 435 (465)
Q Consensus 372 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~---~~~~~~~l~~~Gv~v~~~~~-----~~~lRi 435 (465)
++++++|++.|++++++++.+..+++.|+|+.+++.. + ...+...|+++||++.+.+. ++.+||
T Consensus 346 ~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl 425 (451)
T PRK07678 346 AQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTL 425 (451)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEE
Confidence 9999999999998888899889999999999999821 1 34678889999999976531 378999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 436 VPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 436 ~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+|++++|++||+++++++++++++++
T Consensus 426 ~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (451)
T PRK07678 426 SPPLVISSEEIAFIVGTLKTALERIK 451 (451)
T ss_pred ECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998753
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=539.76 Aligned_cols=379 Identities=35% Similarity=0.579 Sum_probs=342.9
Q ss_pred CCCceEEEeeec-cEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--
Q 012368 78 NRAPVVLASGKG-CKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-- 154 (465)
Q Consensus 78 ~~~p~~~~~~~G-~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-- 154 (465)
.+.|+++++++| +|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+.+..+.++...+|+++|++..+
T Consensus 61 ~~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~ 140 (459)
T PRK11522 61 GDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGK 140 (459)
T ss_pred CCCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCC
Confidence 456889999999 99999999999999999999999999999999999999987655555678889999999999875
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN 234 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (465)
.++++|+|||+||++.|+|+|+.+|+.+ ++.+||.++++|||++.++++.++...++.++.+..+++.++|++|
T Consensus 141 ~~~v~f~~SGsEAve~AlklAr~~t~~~------gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d 214 (459)
T PRK11522 141 LKYSFFCNSGTESVEAALKLAKAYQSPR------GKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGN 214 (459)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHhccC------CCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCC
Confidence 6799999999999999999999998521 2568999999999999999998887777767777778888999999
Q ss_pred HHHHHhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCccc
Q 012368 235 IEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309 (465)
Q Consensus 235 ~~~le~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pd 309 (465)
+++++++++ .+++++||+||+++++|+++|+++||++|+++|++||++||+|||++||||+|.+|+++++++.||
T Consensus 215 ~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD 294 (459)
T PRK11522 215 IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPD 294 (459)
T ss_pred HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCC
Confidence 999999885 257999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCc-cceeeEEeCHHHHhhcc--CCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 012368 310 IMTLAKPLAGG-LPIGAALVTEKVASAIN--YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 310 i~t~sK~lg~G-~~iG~v~~~~~i~~~~~--~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
++|+||++||| +|+|++++++++++.+. +..+++||++||++++|++++|+.++++++.+++++++++|++.|+++.
T Consensus 295 ivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~ 374 (459)
T PRK11522 295 ILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLA 374 (459)
T ss_pred EEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 79999999999998774 3468899999999999999999999888999999999999999999988
Q ss_pred HcCC-CceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 387 ARNP-HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 387 ~~~~-~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.++| .+..++|.|+++.+++.. ....+.+.|+++||++.+.+. ++++||+||+++|++|+++++++|+++++++.+
T Consensus 375 ~~~~~~i~~VrG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 375 REYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred HhCCCceeeEEeceeEEEEEecCchHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888 678999999999999942 245788999999999987632 478999999999999999999999999988764
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=535.39 Aligned_cols=371 Identities=36% Similarity=0.589 Sum_probs=332.9
Q ss_pred ceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeE
Q 012368 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRV 158 (465)
Q Consensus 81 p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v 158 (465)
++++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+.+..+.++...+++++|++..+ .+++
T Consensus 58 ~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v 137 (442)
T TIGR03372 58 AVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYS 137 (442)
T ss_pred eeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEE
Confidence 34556777799999999999999999999999999999999999999987655445567889999999999886 5789
Q ss_pred EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHH
Q 012368 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT 238 (465)
Q Consensus 159 ~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 238 (465)
+|+|||+||++.|+|+|+.++..+ ++.+||.++++|||++.+++++++.+.++..+.|..+++.++|++|.+++
T Consensus 138 ~f~~SGsEA~e~AlklAr~~t~~~------gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~ 211 (442)
T TIGR03372 138 FFCNSGTESVEAALKLAKAYQSPR------GKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAM 211 (442)
T ss_pred EEeCCchHHHHHHHHHHHHHHhhc------CCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHH
Confidence 999999999999999999997311 36789999999999999999998877666677777888999999999988
Q ss_pred HhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe
Q 012368 239 RKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313 (465)
Q Consensus 239 e~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~ 313 (465)
++.++ .+++++||+||+++++|+++|+++||++|+++|++||+++|+||||+||||+|.+|+++++++.||++|+
T Consensus 212 ~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~ 291 (442)
T TIGR03372 212 LKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCL 291 (442)
T ss_pred HHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeee
Confidence 88774 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc-cceeeEEeCHHHHhhcc--CCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC
Q 012368 314 AKPLAGG-LPIGAALVTEKVASAIN--YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 314 sK~lg~G-~~iG~v~~~~~i~~~~~--~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
||+++|| +|+|++++++++++.+. +..+++||++||++++|++++|++++++++.++++++++++++.|+++..++|
T Consensus 292 gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~ 371 (442)
T TIGR03372 292 AKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYP 371 (442)
T ss_pred hhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999 79999999999998883 34688999999999999999999998889999999999999999999988888
Q ss_pred -CceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 391 -HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 391 -~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.+..++|.|+|+++++.. ....+.+.|+++||++.+.+. ++.+||+||+++|++|+|+++++|++++
T Consensus 372 ~~i~~vRG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 372 DLIIEARGKGLLMAIEFRDNEIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred CceEEEecceEEEEEEeCChHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 778999999999999943 346788999999999976532 4789999999999999999999998764
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-68 Score=535.11 Aligned_cols=397 Identities=30% Similarity=0.504 Sum_probs=339.9
Q ss_pred chHHHHHHHHhccccccCC-------CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc
Q 012368 61 NNKEVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV 133 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~ 133 (465)
.++++.+...++.++++.. .|+++++++|+++||.|||+||||.+++++.++||+||+|.+|+.+|++++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~ 89 (453)
T PRK06943 10 ATDDWVARSLRAVWHPCTQMKHHERLPLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHA 89 (453)
T ss_pred chhhHHHHhhcccccCCcCccccccCCCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 3444554444444333222 478999999999999999999999999999999999999999999999987554
Q ss_pred cC-CCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc
Q 012368 134 SN-MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 134 ~~-~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~ 210 (465)
.. .+.++...+|+++|++..+ .++++|++||+||++.|+|+|+.++..++. +++.+||.++.+|||.+.+++++
T Consensus 90 ~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~---~~r~~Ii~~~~~yHG~t~gals~ 166 (453)
T PRK06943 90 MLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGR---GDKREFVCLANGYHGETIGALGV 166 (453)
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEECCCcCCCcHHhhcc
Confidence 33 4567889999999999886 479999999999999999999987643322 14788999999999999999999
Q ss_pred cCCCCcCCCCCCCCCCceEeeCCC-----------------HHHHHhhcC--CCCeEEEEEcc-cCCCCCcccCCHHHHH
Q 012368 211 TSKEHYRSPFEPVMPGVNFVEYGN-----------------IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQ 270 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~--~~~~a~vi~ep-~~~~~G~~~~~~~~l~ 270 (465)
++...++..|.|..+++.++|+++ +++++++++ .+++++||+|| +++++|+++++++|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~ 246 (453)
T PRK06943 167 TDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLR 246 (453)
T ss_pred cCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHH
Confidence 887766666666656655555432 477888885 46899999999 5999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC------CCcC
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGS 343 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~ 343 (465)
+|+++|++||++||+|||+|||||+|.+|+++++++.||++|+||+++|| +|+|++++++++++.+... .+++
T Consensus 247 ~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~ 326 (453)
T PRK06943 247 GLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSH 326 (453)
T ss_pred HHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCC
Confidence 99999999999999999999999999999999999999999999999999 6999999999999887531 3788
Q ss_pred CCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--CC-----hHHHHHH
Q 012368 344 TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VS-----ATPVVDA 416 (465)
Q Consensus 344 t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~-----~~~~~~~ 416 (465)
||++||++|+|++++|+++++++++++++++++++++.|+++ .+++.+..+++.|+|+.+++. .. ...+...
T Consensus 327 T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l-~~~~~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~ 405 (453)
T PRK06943 327 SYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPL-AAHPQVRHLRQRGTIFAFDVALDGDAARTFSRRFFEA 405 (453)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-hcCCCEEeEeccccEEEEEEccCCCcchHHHHHHHHH
Confidence 999999999999999999998999999999999999999987 457888899999999999983 11 3467888
Q ss_pred HHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 417 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 417 l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
|+++||++.+.+ +.+||+||+++|++||++++++|+++++++..+
T Consensus 406 ~~~~Gll~~~~g--~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~~ 450 (453)
T PRK06943 406 ALERELLLRPIG--TTVYLMPPYVLDDDEIAWLAERTRATLDATLAE 450 (453)
T ss_pred HHHCCcEEEecC--CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998765 679999999999999999999999999887443
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-69 Score=497.35 Aligned_cols=369 Identities=37% Similarity=0.643 Sum_probs=328.3
Q ss_pred ccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-
Q 012368 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF- 154 (465)
Q Consensus 76 ~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~- 154 (465)
++...|++|++++|+|+||.+|++|||+.+|..+.++||+||+|.+|+.+|+.++.|....+.+++..++|++|...++
T Consensus 28 ~~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P~ 107 (442)
T KOG1404|consen 28 SYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYLNPPIHDLAEALVSKLPG 107 (442)
T ss_pred ccccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeeccccCCcHHHHHHHHHHhCCC
Confidence 3446799999999999999999999999999999999999999999999999888777778889999999999999986
Q ss_pred -CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceE----
Q 012368 155 -ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF---- 229 (465)
Q Consensus 155 -~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 229 (465)
...++|+|||+|||++|+++++.||+ .-+||.+..+|||.+..++++++...++.++.....++..
T Consensus 108 ~l~~vfF~nsGsEANelal~mar~Yt~---------~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~P 178 (442)
T KOG1404|consen 108 DLKVVFFVNSGSEANELALKMARLYTG---------NLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNP 178 (442)
T ss_pred CceEEEEecCCchHHHHHHHHHHHhcC---------CceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCC
Confidence 77899999999999999999999996 6789999999999999999998877666544332223221
Q ss_pred ----eeCCC----------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 230 ----VEYGN----------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 230 ----~~~~d----------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
-++.+ .+++++.+. ++++|++|.||+++.||++.++++||+++.++|+++|.++|.||||+||
T Consensus 179 dp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGf 258 (442)
T KOG1404|consen 179 DPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGF 258 (442)
T ss_pred CcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcc
Confidence 12221 255666664 5679999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCC-CcCCCCChHHHHHHHHHHHHHhcCchHHHHH
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~-~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~ 371 (465)
||+|.+|.++..++.|||+|++|++|+|+|+|+++..++|++.+.... +..||++||+++++++++|++++++++.++.
T Consensus 259 GRtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~a 338 (442)
T KOG1404|consen 259 GRTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENA 338 (442)
T ss_pred ccccccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999999997654 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe-c-C---------ChHHHHHHHHHCCceEeecCC-CCEEEEecCC
Q 012368 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF-D-V---------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPL 439 (465)
Q Consensus 372 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~-~-~---------~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~ 439 (465)
.+.+.+|++.|.++.+++|.+.++||+|+|+++++ + . ....+.+.|.++|+++.-++. |+++||.||+
T Consensus 339 a~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPl 418 (442)
T KOG1404|consen 339 AEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPL 418 (442)
T ss_pred HHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCe
Confidence 99999999999999999999999999999999998 2 1 123577889999999976654 7899999999
Q ss_pred CCcHHHHHHHHHHH
Q 012368 440 IISEQELDQAVEIL 453 (465)
Q Consensus 440 ~~t~e~i~~~l~~l 453 (465)
++|++|++.+++..
T Consensus 419 ciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 419 CITKEDIDFAVEYF 432 (442)
T ss_pred eccHHHHHHHHHHH
Confidence 99999997777655
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-68 Score=535.55 Aligned_cols=377 Identities=32% Similarity=0.549 Sum_probs=329.1
Q ss_pred ccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-cccCCCCCHHHHHHHHHHHh
Q 012368 74 VGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNMYYSIPQIELAKRLVA 151 (465)
Q Consensus 74 ~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~la~~l~~ 151 (465)
.+.|. +.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++.. +....+.++...+|+++|.+
T Consensus 38 ~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 117 (464)
T PRK06938 38 ARSYPRRIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFA 117 (464)
T ss_pred ccccccCCCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHH
Confidence 33442 57899999999999999999999999999999999999999999999997533 22224567888999999998
Q ss_pred hcCC-----CeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC
Q 012368 152 CSFA-----DRVFFS-NTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP 225 (465)
Q Consensus 152 ~~~~-----~~v~~~-~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
..+. ++++|+ |||+||++.|+|+||.+|+ +.+||.++++|||++.+++++++...++..+.+..+
T Consensus 118 ~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tg---------r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~ 188 (464)
T PRK06938 118 SLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATG---------RSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLP 188 (464)
T ss_pred hCcccccccceEEEeCCCcHHHHHHHHHHHHHhhC---------CCeEEEECCccCCccHHHHhhcCCccccccCCCCCC
Confidence 8752 367675 8999999999999999874 889999999999999999998876555555555556
Q ss_pred CceEeeCC-----------------CHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE
Q 012368 226 GVNFVEYG-----------------NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALL 283 (465)
Q Consensus 226 ~~~~~~~~-----------------d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ll 283 (465)
++.++|++ +++.+++++.. +++++||+||+++++|+++|+++|+++|+++|++||++|
T Consensus 189 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLl 268 (464)
T PRK06938 189 GVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPL 268 (464)
T ss_pred CcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 66666543 25678888862 369999999999999999999999999999999999999
Q ss_pred EEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc
Q 012368 284 VFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS 363 (465)
Q Consensus 284 I~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~ 363 (465)
|+|||+|||||+|.+|+++++++.|||+|+||+++||+|+|++++++++ +.+.+..+++||++||++|+|++++|++++
T Consensus 269 I~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~ 347 (464)
T PRK06938 269 IVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIK 347 (464)
T ss_pred EEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999885 777666789999999999999999999998
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC----------------hHHHHHHHHHCCceEeec
Q 012368 364 NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------------ATPVVDACRDSGLLVLTA 427 (465)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~----------------~~~~~~~l~~~Gv~v~~~ 427 (465)
++++++++++++++|++.|+++.+++|.+..++|.|+|+++++..+ ...+...|+++|+++.+.
T Consensus 348 ~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~ 427 (464)
T PRK06938 348 EHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELG 427 (464)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeec
Confidence 8999999999999999999999888999999999999999998211 235778889999999876
Q ss_pred CC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 428 GK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 428 ~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+. ++++||.||+++|++|++++++++++++.++
T Consensus 428 g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 428 GRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred CCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 52 5899999999999999999999999999875
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=532.54 Aligned_cols=384 Identities=35% Similarity=0.610 Sum_probs=333.2
Q ss_pred ccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC
Q 012368 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF 154 (465)
Q Consensus 76 ~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~ 154 (465)
.+...|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+.++++++.+... .+.++...+|+++|++..+
T Consensus 8 ~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p 87 (443)
T PRK07483 8 SPRATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAP 87 (443)
T ss_pred cccCCCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC
Confidence 344579999999999999999999999999999999999999999999999998654322 3567778999999999875
Q ss_pred --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC
Q 012368 155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 155 --~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
.++++|++||+||++.|+|+|+.|+...+.+ ++.+||.++.+|||++.+++++++...++..+.|..+++.++|+
T Consensus 88 ~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~---~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~ 164 (443)
T PRK07483 88 AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQP---QRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSP 164 (443)
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCC
Confidence 6899999999999999999999985432211 47789999999999999999988776655556666566555542
Q ss_pred ----CC--------------HHHHHhhcC---CCCeEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 012368 233 ----GN--------------IEATRKLIQ---PGKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 233 ----~d--------------~~~le~~l~---~~~~a~vi~ep~~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
++ ++++++++. .+++++||+||+++ ++|.++++++||++|+++|++||++||+|||+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 244 (443)
T PRK07483 165 CYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC 244 (443)
T ss_pred CccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee
Confidence 33 256777663 35799999999998 579999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCcccEEEecccCCCcc-ceeeEEeCHHHHhhccCC----CCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
||||+|.+|+++++++.|||+|+||+++||+ |+|++++++++++.+... .|++||++||++|+|++++|++++++
T Consensus 245 GfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~ 324 (443)
T PRK07483 245 GMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAED 324 (443)
T ss_pred CcccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999995 999999999999988642 47899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHHHHHHCCceEeecCC---
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGK--- 429 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~~l~~~Gv~v~~~~~--- 429 (465)
++++++++++++|++.|+++.+++|.+..++|.|+|+++++..+ ...+.+.|+++||++.+.+.
T Consensus 325 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~ 404 (443)
T PRK07483 325 GLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTID 404 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCcccc
Confidence 99999999999999999998888998899999999999998211 24578889999999987531
Q ss_pred ---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 430 ---GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 430 ---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++++||.||+++|++|||+++++|++++.++..
T Consensus 405 ~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 405 GVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999987653
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=530.98 Aligned_cols=384 Identities=31% Similarity=0.565 Sum_probs=331.8
Q ss_pred HHHHHhccccccCC----CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 012368 66 MEAEKKLLVGTYNR----APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141 (465)
Q Consensus 66 ~~~~~~~~~~~~~~----~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~ 141 (465)
++...++.+++|.+ .|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++.+....+.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~ 96 (451)
T PRK06062 17 YALDRAHVFHSWSAQGKINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDA 96 (451)
T ss_pred HHhhhhhccccccccccCCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHH
Confidence 33334444444433 58999999999999999999999999999999999999999999999998766555667888
Q ss_pred HHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
..+|+++|++..+ .++|+|++||+||++.|+|+||.+|+ |.+||.++++|||++.+++++++.+....
T Consensus 97 ~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tg---------r~~ii~~~~~yHG~t~~als~~~~~~~~~- 166 (451)
T PRK06062 97 RSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTG---------RPKVLSAYRSYHGGTGSAINLTGDPRRWP- 166 (451)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhC---------CceEEEEeCCCCCCCHHHHhhcCCccccc-
Confidence 9999999999885 68999999999999999999999974 78999999999999999998876543321
Q ss_pred CCCCCCCceEe--------eC---CC-------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q 012368 220 FEPVMPGVNFV--------EY---GN-------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD 278 (465)
Q Consensus 220 ~~~~~~~~~~~--------~~---~d-------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 278 (465)
..+..+++..+ ++ +| +++++++++ ++++++||+||+++++|+++|+++||++|+++|++
T Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~ 246 (451)
T PRK06062 167 NDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDR 246 (451)
T ss_pred CCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence 12333333322 12 23 677888885 35799999999999999999999999999999999
Q ss_pred hCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHH
Q 012368 279 AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAA 355 (465)
Q Consensus 279 ~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa 355 (465)
||++||+|||++||||+|.+|+++++++.||++|+||+++|| +|+|++++++++++.+... .+++||++||++|+|+
T Consensus 247 ~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa 326 (451)
T PRK06062 247 HGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAA 326 (451)
T ss_pred cCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 4999999999999988643 5778999999999999
Q ss_pred HHHHHHhcCchHHHHHHHHH-HHHHHHHHHHHHcCCCceeeeccceEEEEEecC--C--------------hHHHHHHHH
Q 012368 356 IAVLDKISNPAFLASVSKKG-HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--S--------------ATPVVDACR 418 (465)
Q Consensus 356 ~a~L~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~--------------~~~~~~~l~ 418 (465)
+++|++++++++++++++++ +++++.|+++..++|.+..+++.|+|+++++.. . ...+.+.|+
T Consensus 327 ~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 406 (451)
T PRK06062 327 VATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACK 406 (451)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH
Confidence 99999998888999999999 699999999988889889999999999999831 1 346788899
Q ss_pred HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 419 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 419 ~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++||++.+.+ +.+||+||+++|++||++++++++++++.++
T Consensus 407 ~~Gvl~~~~~--~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 407 ERGLLPFVNG--NRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred HCCcEEeecC--CEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 9999987643 7899999999999999999999999998765
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=530.20 Aligned_cols=377 Identities=30% Similarity=0.529 Sum_probs=329.5
Q ss_pred ceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC-----
Q 012368 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF----- 154 (465)
Q Consensus 81 p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~----- 154 (465)
|+.+++++|+|+||.|||+||||++++++.++||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+
T Consensus 47 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 126 (472)
T PRK08742 47 LVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGR 126 (472)
T ss_pred CeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccC
Confidence 4679999999999999999999999999999999999999999999987655433 4567889999999999874
Q ss_pred --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC
Q 012368 155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 155 --~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
.++|+|++||+||++.|+|+|+.|+..+++. ++.+||.++++|||++.+++++++.+.++..+.|..+++.++|+
T Consensus 127 ~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~---~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~ 203 (472)
T PRK08742 127 APLSKVFYADNGSAGVEVALKMAFHYFHNRGEH---RRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPS 203 (472)
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCC
Confidence 3699999999999999999999997543322 47899999999999999999998776666666666666666665
Q ss_pred CC-----------------HHHHHhhcC--CCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 233 GN-----------------IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 233 ~d-----------------~~~le~~l~--~~~~a~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
++ ++.+++++. .+++++||+|| +++++|+++++++|+++|+++|++||++||+|||+|||
T Consensus 204 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGf 283 (472)
T PRK08742 204 PDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGF 283 (472)
T ss_pred CCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 43 466777774 45899999999 69999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC------CCCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
||+|.+|+++++++.|||+|+||+++|| +|+|++++++++++.+.. ..|++||++||++|+|+.++|++++++
T Consensus 284 GRtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~ 363 (472)
T PRK08742 284 GRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADD 363 (472)
T ss_pred CCCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999 599999999999987742 247899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--C-----------hHHHHHHHHHCCceEeecCCCCE
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--S-----------ATPVVDACRDSGLLVLTAGKGNV 432 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~-----------~~~~~~~l~~~Gv~v~~~~~~~~ 432 (465)
++.++++++++++++.++. +.+++.+.++++.|+++++++.. . ...+.+.|+++||++.+.+ ++
T Consensus 364 ~l~~~~~~~g~~l~~~~~~-~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g--~v 440 (472)
T PRK08742 364 DVIARNQPTAARMTQLAAQ-IGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLG--DV 440 (472)
T ss_pred CHHHHHHHHHHHHHHHHHH-HhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecC--CE
Confidence 9999999999999976665 46789899999999999999821 1 1356788899999998864 79
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 433 VRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 433 lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+||.||+++|++||++++++|+++++++-.+
T Consensus 441 i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~ 471 (472)
T PRK08742 441 LYWMPPYCVDEAQLALLADTTRHAIDEAVAC 471 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887554
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-67 Score=530.67 Aligned_cols=373 Identities=35% Similarity=0.577 Sum_probs=324.7
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC---
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--- 154 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--- 154 (465)
+.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++.+... .+.++...+++++|++..+
T Consensus 37 ~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~ 116 (443)
T PRK06058 37 TLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDH 116 (443)
T ss_pred CCCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 468999999999999999999999999999999999999999999999988654322 2456778899999999875
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCcCCCCCCCCCCceEee--
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVE-- 231 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 231 (465)
.++++|++||+||++.|+|+|+.+++ +++||.++++|||++.+++++++. ..+...+.+..+++..+|
T Consensus 117 ~~~v~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (443)
T PRK06058 117 EKRSALFNSGAEAVENAVKIARSYTG---------RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMS 187 (443)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHhhC---------CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCC
Confidence 36999999999999999999999975 789999999999999999887753 223333444444444332
Q ss_pred --CCC---------------HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC
Q 012368 232 --YGN---------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294 (465)
Q Consensus 232 --~~d---------------~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr 294 (465)
+++ ++.+++.+..+++++||+||+++++|+++|+++||++|+++|++||++||+|||++||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgR 267 (443)
T PRK06058 188 YPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFAR 267 (443)
T ss_pred cccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 222 233455555568999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHH
Q 012368 295 TGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKK 374 (465)
Q Consensus 295 ~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~ 374 (465)
+|.+|+++++++.||++|+||++++|+|+|++++++++++.+....+++||++||++|+|++++|+.++++++.++++++
T Consensus 268 tG~~fa~~~~gv~PDiv~~gK~l~~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~ 347 (443)
T PRK06058 268 TGAWFACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQI 347 (443)
T ss_pred ChhhhHHHhcCCCCCEEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999987778999999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------hHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHH
Q 012368 375 GHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS---------ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQ 444 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~---------~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e 444 (465)
++++++.|+++..+++.+..++|.|+|+.+++..+ ...+.+.|+++||++.+.+. ++++||.||+++|++
T Consensus 348 g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~ 427 (443)
T PRK06058 348 EALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDE 427 (443)
T ss_pred HHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHH
Confidence 99999999998888898899999999999998211 34577788899999987643 579999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012368 445 ELDQAVEILCKTLPVL 460 (465)
Q Consensus 445 ~i~~~l~~l~~~l~~~ 460 (465)
+|++++++|+++++++
T Consensus 428 ~i~~~~~~l~~~l~~~ 443 (443)
T PRK06058 428 LLREGLDVLEAALADL 443 (443)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998753
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=531.63 Aligned_cols=377 Identities=34% Similarity=0.614 Sum_probs=329.2
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC---
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF--- 154 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~--- 154 (465)
.|+++++++|+|+||.|||+||||.++++++++||+||+|.+|+.+|++++.+... .+.++...+++++|++..+
T Consensus 24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~ 103 (449)
T PRK07481 24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG 103 (449)
T ss_pred CCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC
Confidence 58999999999999999999999999999999999999999999999998655422 3567889999999999873
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee---
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE--- 231 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 231 (465)
.++++|++||+||++.|+|+||.|++..+.+ ++.+||.++++|||++.+++++++...+...+.|..+++..++
T Consensus 104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~ 180 (449)
T PRK07481 104 MRRVFFSSGGSDSVETALKLARQYWKVRGQP---ERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPW 180 (449)
T ss_pred CCEEEEcCchHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCc
Confidence 5799999999999999999999998543322 4788999999999999999988876665555566666665443
Q ss_pred -----CC--CHHH--------HHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 232 -----YG--NIEA--------TRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 232 -----~~--d~~~--------le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
++ |+++ +|+++. ++++++||+||+++++|+++++++|+++|+++|++||++||+|||+||||
T Consensus 181 ~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfG 260 (449)
T PRK07481 181 LYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFG 260 (449)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcC
Confidence 33 5444 344443 35799999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
|+|.+|+++++++.|||+|+||+++|| +|+|++++++++++.+.. ..|++||++||++|+|++++|++++++
T Consensus 261 RtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~ 340 (449)
T PRK07481 261 RTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVRE 340 (449)
T ss_pred cCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999 599999999999998853 257899999999999999999999889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHHHHHHCCceEeecCCCCE
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNV 432 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~~l~~~Gv~v~~~~~~~~ 432 (465)
+++++++++++++++.|+++..++|.+..++|.|+|+++++..+ ...+...|+++||++.+.+ +.
T Consensus 341 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g--~~ 418 (449)
T PRK07481 341 DLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG--TK 418 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC--CE
Confidence 99999999999999999999888999999999999999998211 2357778899999998865 56
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 433 VRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 433 lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+||+||+++|++|||+++++|+++++++.
T Consensus 419 i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 419 IILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999998754
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-67 Score=527.45 Aligned_cols=390 Identities=33% Similarity=0.561 Sum_probs=332.0
Q ss_pred hHHHHHHHHhc--cccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCC
Q 012368 62 NKEVMEAEKKL--LVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMY 137 (465)
Q Consensus 62 ~~~~~~~~~~~--~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~ 137 (465)
.+.+++...++ ..+.|. +.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+++.+..+. ...+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~ 98 (459)
T PRK06931 19 NETYLARQAEFESNVRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDL 98 (459)
T ss_pred hHHHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhcccccccc
Confidence 34455444322 344443 5689999999999999999999999999999999999999999999999863322 2235
Q ss_pred CCHHHHHHHHHHHhhcC-C----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 138 YSIPQIELAKRLVACSF-A----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~-~----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.++...+++++|++..+ . ..++++|||+||++.|+|+|+.+|+ |++||.++++|||++.+++++++
T Consensus 99 ~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tg---------r~~Ii~~~~~yHG~t~~als~t~ 169 (459)
T PRK06931 99 TTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTG---------RSNVISFSGGYHGMTHGALAVTG 169 (459)
T ss_pred CCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcC---------CCeEEEECCCcCCccHHHHhhcC
Confidence 67778999999999875 2 2346669999999999999999975 88999999999999999998887
Q ss_pred CCCcCCCCCCCCCCceEeeCCC-------------HHHH----HhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGN-------------IEAT----RKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d-------------~~~l----e~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
...++..+.+..+++.++|+++ .+++ ++.+. .+++++||+||+++++|+++++++||+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~ 249 (459)
T PRK06931 170 NLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQ 249 (459)
T ss_pred CcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHH
Confidence 6666555666667777776653 2222 33332 246999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHH
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPL 350 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~ 350 (465)
+|+++|++||++||+|||+|||||+|.+|+++++++.|||+|+||+++||+|+|++++++++ +.+.+..+++||++||+
T Consensus 250 ~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpl 328 (459)
T PRK06931 250 KIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQL 328 (459)
T ss_pred HHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCCcceeeeeeHHHH-hhccCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999988774 77766678999999999
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC----------------hHHHH
Q 012368 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------------ATPVV 414 (465)
Q Consensus 351 ~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~----------------~~~~~ 414 (465)
+|+|++++|++++++++++++++++++|++.|+++.+++|.+..++|.|+|+++++..+ ...+.
T Consensus 329 a~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~ 408 (459)
T PRK06931 329 AMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQ 408 (459)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHH
Confidence 99999999999988999999999999999999999888999999999999999998211 23577
Q ss_pred HHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 415 DACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 415 ~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..|+++||++.+.+. ++++||.||+++|++|+++++++|+++++++-
T Consensus 409 ~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 409 KACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred HHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 788999999987543 58999999999999999999999999998754
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=519.80 Aligned_cols=383 Identities=42% Similarity=0.721 Sum_probs=343.6
Q ss_pred ccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-
Q 012368 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF- 154 (465)
Q Consensus 76 ~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~- 154 (465)
.+.+.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++..+....+.+++..+++++|++..+
T Consensus 18 ~~~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~ 97 (408)
T PRK04612 18 VYRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF 97 (408)
T ss_pred ccCCCCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC
Confidence 3557889999999999999999999999999999999999999999999999986655444567778999999999875
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN 234 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (465)
.++++|++||+||++.|+|+|+.|+..++.. +++.+||.++++|||++.++++.++.+.++..+.+..+++..+|++|
T Consensus 98 ~~~v~f~~sGseA~e~AlklAr~~~~~~g~~--~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d 175 (408)
T PRK04612 98 AEKVFLCNSGTEANEAAIKLVRKWASSQGRP--ADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFND 175 (408)
T ss_pred CCEEEEcCchHHHHHHHHHHHHHHHHhhCCC--CCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCC
Confidence 5899999999999999999999997433211 13668999999999999999988877766666666667778889999
Q ss_pred HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec
Q 012368 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA 314 (465)
Q Consensus 235 ~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s 314 (465)
++.+++++.++++++||+||+++++|+++++++|+++|+++|++||+++|+||||+||||+|.+++...+++.||++|||
T Consensus 176 ~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~ 255 (408)
T PRK04612 176 VEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLA 255 (408)
T ss_pred HHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEc
Confidence 99999999767899999999999999999999999999999999999999999999999999887777789999999999
Q ss_pred ccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
|++++|+|+|++++++++++.+....+.+||++||++++++.++|+.++++++.++++++++++++.|+++..+++.+..
T Consensus 256 K~l~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~ 335 (408)
T PRK04612 256 KALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQ 335 (408)
T ss_pred chhcCCCceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCeee
Confidence 99999999999999999998887767889999999999999999999988899999999999999999999888898999
Q ss_pred eeccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 395 VRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 395 ~~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++|.|+|+++++.. .+..+.+.|+++||++.+.+. +.+|+.|++.+|++|+++++++|++++.++-
T Consensus 336 vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~-~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 336 VRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGP-DVLRFVPALNLTDAELADGLARLRLALADYV 405 (408)
T ss_pred eeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeCCC-CEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999831 256788899999999988765 8999999999999999999999999998764
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=527.88 Aligned_cols=393 Identities=27% Similarity=0.492 Sum_probs=337.1
Q ss_pred HHHHHHHHhccccccC-------CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-
Q 012368 63 KEVMEAEKKLLVGTYN-------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS- 134 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~-------~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~- 134 (465)
+.+++++.++.++++. ..|+++++++|+|+||.|||+||||++++++.++||+||+|.+|+.+|++++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~ 85 (460)
T PRK06105 6 NSLEARDIAYHLHPYTNARRHEEEGPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHT 85 (460)
T ss_pred HHHHHhhhhhcccCCcccccccccCCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeec
Confidence 3345555555555444 24899999999999999999999999999999999999999999999999865432
Q ss_pred -CCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 135 -NMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 135 -~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
..+.++...+++++|++..+ .++|+|++||+||++.|+|+++.++..++.. ++.+||.++.+|||++.++++++
T Consensus 86 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t---~r~~il~~~~~yHG~t~~a~s~t 162 (460)
T PRK06105 86 FSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRP---EKKKIISRQRGYHGVTIASASLT 162 (460)
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCccCCcchhheecc
Confidence 23567778999999999885 5799999999999999999999886433221 47899999999999999998888
Q ss_pred CCCCcCCCCCCCCCCceEeeCCC------------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGN------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+.+.++..+.+..+++..+|+++ ++++++++. .+++++||+||+++++|+++++++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~ 242 (460)
T PRK06105 163 GLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWE 242 (460)
T ss_pred CCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHH
Confidence 76555555555555666555432 356777773 357999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-------CCc
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-------DHG 342 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-------~~~ 342 (465)
+|+++|++||++||+|||+|||||+|++|+++++++.|||+|+||+++|| +|+|++++++++++.+... .|+
T Consensus 243 ~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~ 322 (460)
T PRK06105 243 KIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHG 322 (460)
T ss_pred HHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccC
Confidence 99999999999999999999999999999999999999999999999998 6999999999999887531 378
Q ss_pred CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------
Q 012368 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS------------- 409 (465)
Q Consensus 343 ~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~------------- 409 (465)
+||++||++|++++++|++++++++++++++++++|++.|+++ .++|.+..++|.|+++++++..+
T Consensus 323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~ 401 (460)
T PRK06105 323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKV 401 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHH
Confidence 8999999999999999999998999999999999999999998 78999999999999999998210
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+..+...|+++||++.+.+ +++||+||+++|++||++++++|+++++++.
T Consensus 402 a~~i~~~~~~~Gvl~~~~g--~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (460)
T PRK06105 402 GARANAAAHEHGVISRAMG--DTLAFCPPLIITAAQVDEMVDRFGRALDDVA 451 (460)
T ss_pred HHHHHHHHHHCCeEEEecC--CEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 2457888899999998764 7899999999999999999999999998765
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=521.72 Aligned_cols=379 Identities=35% Similarity=0.572 Sum_probs=335.2
Q ss_pred ccccCCC-ceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHh
Q 012368 74 VGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVA 151 (465)
Q Consensus 74 ~~~~~~~-p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 151 (465)
.+.+.+. |+++++++|+|+||.|||+||||++++++.++||+||+|.+|+.++++++.+.. ..++++...+++++|++
T Consensus 15 ~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~ 94 (425)
T PRK07495 15 SRGVGMTTQIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNA 94 (425)
T ss_pred ccccCcCCCeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHH
Confidence 4445444 899999999999999999999999999999999999999999999999866543 24567778999999999
Q ss_pred hcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCcCCCCCCCCCCc
Q 012368 152 CSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGV 227 (465)
Q Consensus 152 ~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (465)
..+ .++|+|++||+||++.|+|+|+.+|+ +.+||.++++|||++.+++++++. ..+...+.+..+++
T Consensus 95 ~~p~~~~~~v~f~~SGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~ 165 (425)
T PRK07495 95 LVPGDFAKKTIFVTTGAEAVENAVKIARAATG---------RSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDV 165 (425)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCe
Confidence 886 26999999999999999999999974 778999999999999988887664 33555566666777
Q ss_pred eEeeCCC----------HHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 228 NFVEYGN----------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 228 ~~~~~~d----------~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.++|+++ ++++++++. ++++++||+||+++++|+++++++|+++|+++|++||+++|+||||+|||
T Consensus 166 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g 245 (425)
T PRK07495 166 YHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFA 245 (425)
T ss_pred EEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCC
Confidence 7788764 556677764 35799999999999999888999999999999999999999999999999
Q ss_pred CCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHH
Q 012368 294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSK 373 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~ 373 (465)
|+|.+++++++++.||++||||++++|+|+|++++++++++.+.+..+.+||++||++++++.++|+.++++++.+++++
T Consensus 246 r~G~~~a~~~~gv~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~ 325 (425)
T PRK07495 246 RTGKLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQ 325 (425)
T ss_pred cCCCceeecccCCCCCEEeehhhhcCCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 99998889999999999999999999999999999999999988777889999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------hHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcH
Q 012368 374 KGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS---------ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISE 443 (465)
Q Consensus 374 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~---------~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~ 443 (465)
++++++++|+++.+.+|.+..+++.|+|+++++..+ ...+.+.|+++|+++.+.+. ++++||.||+++|+
T Consensus 326 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~ 405 (425)
T PRK07495 326 LGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQD 405 (425)
T ss_pred HHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCH
Confidence 999999999999888898889999999999998321 34577888999999977543 58999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012368 444 QELDQAVEILCKTLPVLD 461 (465)
Q Consensus 444 e~i~~~l~~l~~~l~~~~ 461 (465)
+++++++++|++++++++
T Consensus 406 ~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 406 DVFAEALDILEASILEAS 423 (425)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998875
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=525.37 Aligned_cols=373 Identities=30% Similarity=0.501 Sum_probs=327.0
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--C
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~ 155 (465)
+.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... ...++...+|+++|++..+ .
T Consensus 34 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 113 (457)
T PRK05639 34 LFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIEN 113 (457)
T ss_pred CCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCc
Confidence 468999999999999999999999999999999999999999999999998654333 2345678899999999886 4
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCcCCCCCCCCCCceEeeCCC
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN 234 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d 234 (465)
++|+|++||+||++.|+|+|+.+|+ +.+||.++++|||++.+++++++. ..++..+.+..+++.++|+++
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~ 184 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTR---------RPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPN 184 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcC---------CCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCc
Confidence 7999999999999999999999875 788999999999999998887653 233444556666777777653
Q ss_pred -------------H--------HHHHhhc-----CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 012368 235 -------------I--------EATRKLI-----QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV 288 (465)
Q Consensus 235 -------------~--------~~le~~l-----~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv 288 (465)
. +.+++.+ .++++++||+||+++++|+++|+++|+++|+++|++||++||+|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv 264 (457)
T PRK05639 185 PYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEV 264 (457)
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence 2 2455554 2468999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 289 QCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 289 ~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
++||||+|.+|+++++++.||++++||+++||+|+|++++++++++. ....+.+|+++||++++|++++|+.+++++++
T Consensus 265 ~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~~-~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~ 343 (457)
T PRK05639 265 QTGIGRTGKWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMDL-TSGSALLTPAANPVISAAAEATLEIIEEENLL 343 (457)
T ss_pred hhccCcCchHHHHHhcCCCCCEEEechhhcCCCcceeEEehHHHHhh-cCCCcccCCCcCHHHHHHHHHHHHHHHHccHH
Confidence 99999999999999999999999999999999999999999999984 33456789999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--------ChHHHHHHHHHCCceEeecCC-CCEEEEecCC
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPL 439 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~ 439 (465)
+++++++++|++.|+++..+++.+..++|.|+|+++++.. ....+.+.|+++|+++.+.+. ++++||.||+
T Consensus 344 ~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl 423 (457)
T PRK05639 344 KNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPL 423 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCC
Confidence 9999999999999999988899999999999999999821 134678889999999987653 4799999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhh
Q 012368 440 IISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 440 ~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++|++|+++++++|+++++++.
T Consensus 424 ~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 424 VITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=527.23 Aligned_cols=374 Identities=32% Similarity=0.546 Sum_probs=329.7
Q ss_pred ceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--CCe
Q 012368 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--ADR 157 (465)
Q Consensus 81 p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~~~ 157 (465)
|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+ .++
T Consensus 30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 109 (466)
T PRK07030 30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSR 109 (466)
T ss_pred CceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence 4689999999999999999999999999999999999999999999998755433 4667889999999999875 679
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC---
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN--- 234 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--- 234 (465)
|+|++||+||++.|+|+|+.|+..++.. ++.+||.+.++|||++.+++++++.+.++..+.|..+++.++|+++
T Consensus 110 v~f~~sGsEAve~AlKlAr~~~~~~g~t---~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 186 (466)
T PRK07030 110 CFYADNGSSAIEVALKMSFHYWRNRGKP---RKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYL 186 (466)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHHhCCC---CCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccc
Confidence 9999999999999999999986433221 4778999999999999999998877666655666556665555433
Q ss_pred --------------HHHHHhhcC--CCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc
Q 012368 235 --------------IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297 (465)
Q Consensus 235 --------------~~~le~~l~--~~~~a~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~ 297 (465)
++++++++. ++++++||+|| +++++|+++++++|+++|+++|++||++||+|||+|||||+|.
T Consensus 187 ~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~ 266 (466)
T PRK07030 187 RPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT 266 (466)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc
Confidence 566788885 46899999999 7999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 298 ~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
+|+++++++.||++|+||+++|| +|+|++++++++++.+.. ..|++||++||++|+|+.++|++++++++.+
T Consensus 267 ~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~ 346 (466)
T PRK07030 267 MFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIE 346 (466)
T ss_pred chHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999999 599999999999987742 2588999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--C-----------hHHHHHHHHHCCceEeecCCCCEEEEe
Q 012368 370 SVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--S-----------ATPVVDACRDSGLLVLTAGKGNVVRLV 436 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~-----------~~~~~~~l~~~Gv~v~~~~~~~~lRi~ 436 (465)
+++++++++++.|+++ .++|.+..+++.|+++++++.. . ..++.+.|+++||++.+.+ +.+||.
T Consensus 347 ~~~~~G~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g--~~i~~~ 423 (466)
T PRK07030 347 NNRALARRMAEATAHL-ADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLG--SVVYFL 423 (466)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecC--CEEEEE
Confidence 9999999999999987 4688889999999999999821 0 1357888999999998764 689999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 437 PPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
||+++|++||++++++|+++++++
T Consensus 424 Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 424 PPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=525.21 Aligned_cols=377 Identities=31% Similarity=0.511 Sum_probs=323.7
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC--C
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~--~ 155 (465)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+ .
T Consensus 32 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 111 (456)
T PRK07480 32 GSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGF 111 (456)
T ss_pred CCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCc
Confidence 47899999999999999999999999999999999999999999999998654322 3567889999999999885 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC--
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-- 233 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (465)
++|+|++||+||++.|+|+|+.|+..++.. ++.+||.++++|||++.+++++++...+...+.+..+++..++++
T Consensus 112 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~ 188 (456)
T PRK07480 112 NHVFFTNSGSEANDTVLRMVRHYWALKGKP---QKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYW 188 (456)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcc
Confidence 799999999999999999999986433221 477899999999999999888876554333333333444444322
Q ss_pred -------------C--HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 234 -------------N--IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 234 -------------d--~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
| ++++++.+. .+++++||+||+++++|+++++++|+++|+++|++||++||+|||+|||||+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRt 268 (456)
T PRK07480 189 FGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRT 268 (456)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC
Confidence 1 266665552 3589999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhcc--C--CCCcCCCCChHHHHHHHHHHHHHhcCchHHHH
Q 012368 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN--Y--GDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~--~--~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~ 370 (465)
|.+|+++++++.||++||||+++|| +|+|++++++++++.+. . ..+++||++||++|+|++++|++++++++.++
T Consensus 269 G~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~ 348 (456)
T PRK07480 269 GEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVER 348 (456)
T ss_pred cchhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999999 59999999999999872 2 25789999999999999999999988899999
Q ss_pred H-HHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHHHHHHCCceEeecCCCCEEEEe
Q 012368 371 V-SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRLV 436 (465)
Q Consensus 371 ~-~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~~l~~~Gv~v~~~~~~~~lRi~ 436 (465)
+ +++++++++.|+++ .++|.+..++|.|+|+++++..+ ...+...|+++||++.+.+ +.+||+
T Consensus 349 ~~~~~g~~l~~~l~~l-~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~--~~l~~~ 425 (456)
T PRK07480 349 VRDDTGPYLQKRLREL-ADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVG--DRMIIS 425 (456)
T ss_pred HHHHHHHHHHHHHHHh-hcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeecC--CEEEEE
Confidence 9 69999999999995 67898999999999999999211 1356678899999998754 789999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 437 PPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
|++++|++|||+++++|++++.++++
T Consensus 426 Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 426 PPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-67 Score=490.46 Aligned_cols=402 Identities=48% Similarity=0.804 Sum_probs=352.3
Q ss_pred hhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHH
Q 012368 48 NDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA 127 (465)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~ 127 (465)
..++...++++.+.++ .+.+|.+.|+++.+++|+++||.||++||||+++|++..+||++|+|.+|+.+++
T Consensus 15 ~~~~~~~~~i~~~~~~---------~~~t~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~ 85 (433)
T KOG1401|consen 15 NAASVSMPGIVEEKTR---------IVSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQA 85 (433)
T ss_pred cchhhccccccccceE---------EeeecCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHH
Confidence 3344455555544444 3446778999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCCCHHHHHHHHHHHhhc---CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCc
Q 012368 128 NVLTHVSNMYYSIPQIELAKRLVACS---FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT 204 (465)
Q Consensus 128 ~~~~~~~~~~~~~~~~~la~~l~~~~---~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~ 204 (465)
.++.|.++.+.+....++++.|.+.. ..++|+|+|||||||+.|+++||+++....+. .+.++|.|+++|||.+
T Consensus 86 ~k~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~---~~t~~Iaf~nsyHG~t 162 (433)
T KOG1401|consen 86 KKLGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPE---KKTKFIAFENSYHGRT 162 (433)
T ss_pred hhheeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCc---cceeEEEEecCcCCcc
Confidence 99988878777777889999999888 48999999999999999999999998755543 2457999999999999
Q ss_pred cccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCE
Q 012368 205 MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL 282 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l 282 (465)
.++++.++...++.++.|..+++...++||..++++.++. +++++||+||++++||.++++++|+..|+++|+++|++
T Consensus 163 lgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl 242 (433)
T KOG1401|consen 163 LGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVL 242 (433)
T ss_pred hhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCce
Confidence 9999999999998888899999999999999999999983 36999999999999999999999999999999999999
Q ss_pred EEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCC---cCCCCChHHHHHHHHHHH
Q 012368 283 LVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH---GSTFAGSPLVCNAAIAVL 359 (465)
Q Consensus 283 lI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~---~~t~~~~~~~~~aa~a~L 359 (465)
||+|||++||||+|..|++++++++|||.|++|.|+||+|+|++++++++++.+.+..+ ++||++||++|.++..+|
T Consensus 243 ~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l 322 (433)
T KOG1401|consen 243 LIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVL 322 (433)
T ss_pred EEeehhhhCccccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988755 999999999999999999
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee-eeccceEEEEEecCChHHHHHHHHHCCceEeecCC---CCEEEE
Q 012368 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD-VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK---GNVVRL 435 (465)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~lRi 435 (465)
+.+.+++.++++.+.++.|++.+.+.+.+.+.... ..++|+++++.+..+..++.+...+.|.++.+.+. ...+||
T Consensus 323 ~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i 402 (433)
T KOG1401|consen 323 DELKDPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRI 402 (433)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccceEEE
Confidence 99999999999999999999999999888774333 37889999998866666666666666666655432 134777
Q ss_pred ec--CC--CCcHHHHHHHHHHHHHHHHHhh
Q 012368 436 VP--PL--IISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 436 ~~--~~--~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.| .+ .+++|.++++++++.+.+.++.
T Consensus 403 ~P~~~l~~~~~~E~i~~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 403 APIYLLTVEHTPEVIQRLLTILEKVLSALN 432 (433)
T ss_pred eccccccccCcHHHHHHHHHHHHHHHHHhc
Confidence 77 33 3458999999999999998765
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=518.74 Aligned_cols=381 Identities=43% Similarity=0.771 Sum_probs=341.2
Q ss_pred cccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC
Q 012368 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF 154 (465)
Q Consensus 75 ~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~ 154 (465)
+.|.+.|+++++++|+++||.||++||||.+++++.+|||+||+|.+|+.++++++.+....+.++...+|+++|++..+
T Consensus 12 ~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~ 91 (397)
T TIGR03246 12 PNYAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATF 91 (397)
T ss_pred cccCCCCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC
Confidence 34557799999999999999999999999999999999999999999999999875443344567778999999999888
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN 234 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (465)
.++++|++||+|||+.|+++++.+|..++. +++++||.++.+|||++..++++++.+.+...+.+..+++..+|++|
T Consensus 92 ~~~~~f~~SGseA~e~Alk~ar~~~~~~~~---~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 168 (397)
T TIGR03246 92 ADKVFFCNSGAEANEAALKLARRYALDKHG---ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYND 168 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCC---CCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCC
Confidence 889999999999999999999998743211 14788999999999999988888876666666667777888899999
Q ss_pred HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec
Q 012368 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA 314 (465)
Q Consensus 235 ~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s 314 (465)
++++++++.+ ++++||+||+++++|+++++++||++|+++|++||+++|+||||+||||+|.+++++++++.||++|+|
T Consensus 169 ~~~l~~~l~~-~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~ 247 (397)
T TIGR03246 169 LAAAKALISD-KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSA 247 (397)
T ss_pred HHHHHHHhcc-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEee
Confidence 9999999964 699999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred ccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
|++++|+|+|++++++++++.+....+.+||++||++++++.++|+.++++++.++++++++++++.|+++..+++.+..
T Consensus 248 K~lggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~ 327 (397)
T TIGR03246 248 KALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARYNVFSE 327 (397)
T ss_pred hhhhCCcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCeEe
Confidence 99999999999999999999997667888999999999999999999877889999999999999999998777888888
Q ss_pred eeccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 395 VRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 395 ~~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+++.|.++.+++.. ....+++.|+++|+++.+.+. +++|++|++.+|+++|++++++|++++.++
T Consensus 328 vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~-~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 328 IRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGP-NVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred eecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeecCC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999998832 356788999999999987765 789999999999999999999999998754
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=526.76 Aligned_cols=378 Identities=33% Similarity=0.579 Sum_probs=330.9
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--C
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~ 155 (465)
+.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+ .
T Consensus 37 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~ 116 (460)
T PRK06916 37 EDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGL 116 (460)
T ss_pred CCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999999999999999999999999999998655433 4567888999999999886 5
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC--
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-- 233 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (465)
++++|+|||+||++.|+|+|+.++..++. +++.+||.++++|||.+.+++++++...++..+.|..+++..+|++
T Consensus 117 ~~v~f~~SGseAve~AlklAr~~~~~~g~---tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~ 193 (460)
T PRK06916 117 KKVFYSDSGATAVEIAIKMAFQYWQNKGK---PKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYT 193 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCC---CCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcc
Confidence 79999999999999999999998643322 2478999999999999999999888766665666655555555442
Q ss_pred ---------------CHHHHHhhcC--CCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 234 ---------------NIEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 234 ---------------d~~~le~~l~--~~~~a~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
++++++++++ ++++++||+|| +++++|+++++++||++|+++|++||++||+|||+|||||+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRt 273 (460)
T PRK06916 194 YRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRT 273 (460)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcC
Confidence 2566777775 46899999999 69999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
|.+|+++++++.||++|+||+++|| +|+|++++++++++.+.. ..+++||++||++|+|++++|+.++++++
T Consensus 274 G~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l 353 (460)
T PRK06916 274 GKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNL 353 (460)
T ss_pred chhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 9999999999999999999999999 599999999999987642 24788999999999999999999988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHHHHHHCCceEeecCCCCEEE
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVR 434 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~~l~~~Gv~v~~~~~~~~lR 434 (465)
+++++++++++++.|+++. +++.+..++|.|+|+.+++..+ ...+...|+++||++.+.+ +++|
T Consensus 354 ~~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g--~~l~ 430 (460)
T PRK06916 354 IEQVARKTEYVATQLEDLF-ALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLG--NTIV 430 (460)
T ss_pred HHHHHHHHHHHHHHHHHhh-cCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecC--CEEE
Confidence 9999999999999999985 4888889999999999998211 2467888999999998864 7899
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 435 LVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 435 i~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
|.||+++|++||++++++|+++++++..
T Consensus 431 ~~Ppl~it~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 431 FMPPLASTIDELDEMLRILYKAISDVTE 458 (460)
T ss_pred EeCCcccCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999987643
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=515.87 Aligned_cols=377 Identities=79% Similarity=1.262 Sum_probs=341.0
Q ss_pred EEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCC
Q 012368 84 LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNT 163 (465)
Q Consensus 84 ~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~s 163 (465)
+++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+++++..+....+.++...+++++|++..+.++|+|++|
T Consensus 1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~s 80 (382)
T PLN00144 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRVFFCNS 80 (382)
T ss_pred CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 46899999999999999999999999999999999999999999987655444567789999999999877889999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCC----CCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHH
Q 012368 164 GTEANEAAIKFARKFQRHSNPDSK----EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239 (465)
Q Consensus 164 G~eA~~~al~~a~~~t~~~~~~~~----~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 239 (465)
|+||++.|+|+|+.+++.++..+. ..+.+||.++++|||++.+++++++...++.++.+..+++.++|++|+++++
T Consensus 81 GseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 160 (382)
T PLN00144 81 GTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAAR 160 (382)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHH
Confidence 999999999999999864332110 0157899999999999999999888776666677777888899999999999
Q ss_pred hhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCC
Q 012368 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG 319 (465)
Q Consensus 240 ~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~ 319 (465)
+++..+++++||+||+++++|+++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||++++
T Consensus 161 ~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~ 240 (382)
T PLN00144 161 KLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAG 240 (382)
T ss_pred HhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccC
Confidence 99976689999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred ccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc
Q 012368 320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG 399 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g 399 (465)
|+|+|++++++++++.+....+.+||++||++++++.++|+.++++++.++++++++++++.|++++.++|.+..+++.|
T Consensus 241 G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg~G 320 (382)
T PLN00144 241 GLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVG 320 (382)
T ss_pred CcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCc
Confidence 99999999999999999877788999999999999999999998889999999999999999999988888888899999
Q ss_pred eEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 400 LIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 400 ~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+++|++++.....++..++++||++.+++.++.+||+|+++++++++++++++|++++.++
T Consensus 321 ~~~~l~l~~~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 321 LLVGIQLDVPAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred eEEEEEecCccHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 9999999656678999999999999987545899999999999999999999999999764
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-66 Score=521.45 Aligned_cols=390 Identities=29% Similarity=0.597 Sum_probs=336.8
Q ss_pred HHHHHHHHhcccccc--CCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCC
Q 012368 63 KEVMEAEKKLLVGTY--NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYS 139 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~--~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~ 139 (465)
+.+++...++..+.+ ...|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~ 84 (445)
T PRK08593 5 HQLIQEDEHYFAKSGRIKYYPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYH 84 (445)
T ss_pred HHHHHHHHHhhccccccCCCCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccccCC
Confidence 344444545544444 3368999999999999999999999999999999999999999999999998765433 3567
Q ss_pred HHHHHHHHHHHhhcC-C--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-C
Q 012368 140 IPQIELAKRLVACSF-A--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-H 215 (465)
Q Consensus 140 ~~~~~la~~l~~~~~-~--~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~ 215 (465)
+...+|+++|++..+ . ++|+|++||+||++.|+|+||.+|+ +.+||.++++|||++.+++++++.. .
T Consensus 85 ~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tg---------r~~ii~~~~~YHG~t~~als~s~~~~~ 155 (445)
T PRK08593 85 EPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTG---------RPYIISFTNAYHGSTYGSLSMSGISLN 155 (445)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCCcHHHHhhcCCCcc
Confidence 889999999999885 2 6999999999999999999999985 7889999999999999998887643 2
Q ss_pred cCCCCCCCCCCceEeeCCCH-----------------HHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 012368 216 YRSPFEPVMPGVNFVEYGNI-----------------EATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d~-----------------~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~ 274 (465)
++..+.+..+++.++|++|. +++++++. .+++++||+||+++++|+++++++|+++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~ 235 (445)
T PRK08593 156 MRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYK 235 (445)
T ss_pred cccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHH
Confidence 33445566667766665432 44555453 3579999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHH
Q 012368 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNA 354 (465)
Q Consensus 275 l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~a 354 (465)
+|++||++||+||||+||||+|.+++++++++.||++|+||++++|+|+|++++++++++.+....+..|+++||++++|
T Consensus 236 lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aa 315 (445)
T PRK08593 236 FCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAA 315 (445)
T ss_pred HHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999988766677899999999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCceE
Q 012368 355 AIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLV 424 (465)
Q Consensus 355 a~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v 424 (465)
++++|+.+++++++++++++++++++.|+++.+++|.+..++|.|+++++++.. ....+...|+++||++
T Consensus 316 a~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~ 395 (445)
T PRK08593 316 ALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVI 395 (445)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEE
Confidence 999999998889999999999999999999988899999999999999998831 1346788899999999
Q ss_pred eecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 425 LTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 425 ~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+.+. +.+||+|++++|++||++++++++++++++.+
T Consensus 396 ~~~~~-~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 396 IAVAG-NVLRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred eccCC-CEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 76543 78999999999999999999999999988754
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-66 Score=522.71 Aligned_cols=376 Identities=30% Similarity=0.491 Sum_probs=325.3
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-C-CCCHHHHHHHHHHHhhcC--C
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-M-YYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~-~~~~~~~~la~~l~~~~~--~ 155 (465)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... . +.++...+|+++|.+..+ .
T Consensus 33 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 112 (466)
T PRK07036 33 GSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDL 112 (466)
T ss_pred CCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCc
Confidence 48899999999999999999999999999999999999999999999998654322 2 567889999999999875 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC-
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN- 234 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 234 (465)
++|+|++||+||++.|+|+|+.++..++.. ++.+||.++++|||++.+++++++.+.++..+.+..+++.++|+++
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~t---~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (466)
T PRK07036 113 NHVFLTTGGSTAVDSALRFVHYYFNVRGRP---AKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNP 189 (466)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCC---CccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcc
Confidence 799999999999999999999987433321 4789999999999999998888876665555555555555544332
Q ss_pred ----------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 235 ----------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 235 ----------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
++.+++.+. ++++++||+||+++++|+++|+++|+++|+++|++||+++|+|||+|||||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRt 269 (466)
T PRK07036 190 YRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRL 269 (466)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcC
Confidence 234555553 4689999999999999999999999999999999999999999999999999
Q ss_pred Ccccccc-ccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 296 GYLWAHE-HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 296 g~~~~~~-~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
|.+|+.+ ++++.|||+|+||+++|| +|+|++++++++++.+.. ..+++||++||++|+|++++|+.+++++
T Consensus 270 G~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~ 349 (466)
T PRK07036 270 GHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREG 349 (466)
T ss_pred chhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 9988887 789999999999999999 599999999999998752 2467899999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHHHHHHCCceEeecCCCCEE
Q 012368 367 FLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVV 433 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~~l~~~Gv~v~~~~~~~~l 433 (465)
+++++++++++|++.|+++ .++|.+..++|.|+++++++..+ ...+...|+++||++.+.+ +.+
T Consensus 350 l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~--~~~ 426 (466)
T PRK07036 350 LCEHVREVGPYFEERLASL-RELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE--HLC 426 (466)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecC--CEE
Confidence 9999999999999999876 67898999999999999998210 2457788999999998764 679
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 434 RLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 434 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|++||+++|++||++++++|+++++++.
T Consensus 427 ~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 427 VLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred EEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=526.86 Aligned_cols=377 Identities=29% Similarity=0.543 Sum_probs=323.9
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC--
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF-- 154 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~-- 154 (465)
+.|+++++++|+|+||.|||+||||.+++++.+|||+||+|++|+.++++++.+.+. .+.++...+|+++|.+.+.
T Consensus 70 ~~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~ 149 (504)
T PLN02760 70 LEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTAR 149 (504)
T ss_pred CCCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCC
Confidence 368999999999999999999999999999999999999999999999998654322 3467779999999998853
Q ss_pred -CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC
Q 012368 155 -ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG 233 (465)
Q Consensus 155 -~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (465)
.++++|+|||+||++.|+|+|+.|+...+.. ++.+||.++.+|||++.+++++++.+.+...+.+..+.+.+++++
T Consensus 150 ~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~---~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p 226 (504)
T PLN02760 150 KMGKVFFTNSGSEANDTQVKLVWYYNNALGRP---NKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCP 226 (504)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCC
Confidence 4689999999999999999999886433221 367899999999999999988887655444443333334333321
Q ss_pred ----------C--------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 234 ----------N--------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 234 ----------d--------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
+ .++|++++. ++++++||+||+++++|+++|+++|+++|+++|++||++||+|||+|||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGf 306 (504)
T PLN02760 227 HYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAF 306 (504)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCC
Confidence 1 245777663 3579999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhcC
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISN 364 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~~ 364 (465)
||+|.+|+++++++.|||+||||+++|| +|+|++++++++++.+.. ..|++||++||++|+|++++|+++++
T Consensus 307 GRtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~ 386 (504)
T PLN02760 307 GRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKE 386 (504)
T ss_pred cccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 599999999999998853 25789999999999999999999988
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--C-----------hHHHHHHHHHCCceEeecCCCC
Q 012368 365 PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--S-----------ATPVVDACRDSGLLVLTAGKGN 431 (465)
Q Consensus 365 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~-----------~~~~~~~l~~~Gv~v~~~~~~~ 431 (465)
+++.+++++++++|++.|+++ .+++.+..++|.|+|+++++.. . ...+.+.|+++||++.+.+ +
T Consensus 387 ~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g--~ 463 (504)
T PLN02760 387 RNIPEHVNKIAPRFQDGIKAF-SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG--D 463 (504)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC--C
Confidence 899999999999999999997 7788889999999999999821 1 3457788999999998764 6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 432 VVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 432 ~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+||+|++++|++||++++++++++++++.
T Consensus 464 ~lrl~Ppl~it~eeid~~~~~l~~al~~~~ 493 (504)
T PLN02760 464 NIMMSPPLIITPEEVDELISIYGKALKATE 493 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999998764
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=521.27 Aligned_cols=396 Identities=25% Similarity=0.380 Sum_probs=333.7
Q ss_pred hhccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHH
Q 012368 39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD 118 (465)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~ 118 (465)
...|.++ |++|++++|||++++.+.+. .+.+.|+++++++|+|+||+|||+||||.++++++++||+||+
T Consensus 50 ~~~S~~l-~~ra~~~~pgGv~~~~r~~~---------~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~ 119 (474)
T PLN02482 50 TTKSEEI-FKAAKELMPGGVNSPVRAFK---------SVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDE 119 (474)
T ss_pred ChHHHHH-HHHHHhhCCCCCCCcchhhc---------ccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHH
Confidence 5688888 99999999999998887542 2346799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 012368 119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197 (465)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~ 197 (465)
|.+|+.++++++.+ ...+++...+|+++|++..+ .++|+|+|||+||++.|+|+||.||+ |++||.++
T Consensus 120 v~~av~~ql~~~~~--~~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tg---------r~~Ii~~~ 188 (474)
T PLN02482 120 VLAALAETMKKGTS--FGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTG---------REKIIKFE 188 (474)
T ss_pred HHHHHHHHHhhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcC---------CCEEEEEC
Confidence 99999999998654 34567778999999999886 89999999999999999999999985 88999999
Q ss_pred CCcccCccccccc--cCCCCcCCCCCC-----CCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHH
Q 012368 198 NSFHGRTMGALAL--TSKEHYRSPFEP-----VMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEF 268 (465)
Q Consensus 198 ~~yhg~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~ 268 (465)
++|||+++..... ++......+..+ ..+.+..+||||+++++++++ .+++++||+||+++++|+++|+++|
T Consensus 189 g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~f 268 (474)
T PLN02482 189 GCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEF 268 (474)
T ss_pred CccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHH
Confidence 9999998654332 211111111111 123456789999999999996 3579999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---CCCcCCC
Q 012368 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGSTF 345 (465)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t~ 345 (465)
|++|+++|++||++||+|||++|| |+|.+++++++++.||++||||+++||+|+|++++++++++.+.+ ..+++||
T Consensus 269 l~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~ 347 (474)
T PLN02482 269 LEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTL 347 (474)
T ss_pred HHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCc
Confidence 999999999999999999999999 999888899999999999999999999999999999999998863 3478899
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC------------C---h
Q 012368 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV------------S---A 410 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~------------~---~ 410 (465)
++||++++|++++|+++++++++++++++++++++.|+++..+++....+.+.+.++.+++.. + .
T Consensus 348 ~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~ 427 (474)
T PLN02482 348 SGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKF 427 (474)
T ss_pred chhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHH
Confidence 999999999999999998889999999999999999999877754322222334466776621 1 2
Q ss_pred HHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 411 TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 411 ~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..+.+.|+++||++.+.+.+. + .|++.+|++|||++++++++++++
T Consensus 428 ~~~~~~l~~~Gv~~~~~~~~~--~-~psl~ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 428 ARFHRGMLEEGVYLAPSQFEA--G-FTSLAHTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred HHHHHHHHHCCeEEeccCCCC--C-cCCCCCCHHHHHHHHHHHHHHHHh
Confidence 357888999999998865421 2 489999999999999999999875
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-66 Score=521.68 Aligned_cols=374 Identities=31% Similarity=0.530 Sum_probs=323.6
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcCC--
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSFA-- 155 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~~-- 155 (465)
+.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++..+.+. .+.++...+|+++|++..+.
T Consensus 20 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 99 (442)
T TIGR00709 20 KLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRK 99 (442)
T ss_pred CCCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcC
Confidence 468999999999999999999999999999999999999999999999987543322 35677889999999998752
Q ss_pred --Ce-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC
Q 012368 156 --DR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 156 --~~-v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
.+ ++++|||+||++.|+|+|+.||+ |.+||.++++|||++.+++++++...++..+.+..+++.++|+
T Consensus 100 ~~~~~~f~~~sGsEA~e~AlklAr~~tg---------r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~ 170 (442)
T TIGR00709 100 MDYKLQFPGPSGADAVEAAIKLAKTYTG---------RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPY 170 (442)
T ss_pred CCccEEEeCCCHHHHHHHHHHHHHHhcC---------CCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCC
Confidence 24 55679999999999999999974 7889999999999999999988755554445555566665555
Q ss_pred CCH-----------------HHHHhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 012368 233 GNI-----------------EATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 233 ~d~-----------------~~le~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
++. +.+++.+. .+++++||+||+++++|+++++++|+++|+++|++||++||+||||+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~t 250 (442)
T TIGR00709 171 PHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQA 250 (442)
T ss_pred CccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 431 22344442 25799999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHH
Q 012368 291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~ 370 (465)
||||+|.+|+++++++.||++|+||++++|+|+|+++++++ ++.+....+.+||++||++|+|++++|+.++++++.++
T Consensus 251 GfGRtG~~~a~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~ 329 (442)
T TIGR00709 251 GFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQN 329 (442)
T ss_pred CCCCCCchhHHHHcCCCCcEEEEcccccCCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999988 56665556889999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC----------------hHHHHHHHHHCCceEeecCC-CCEE
Q 012368 371 VSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------------ATPVVDACRDSGLLVLTAGK-GNVV 433 (465)
Q Consensus 371 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~----------------~~~~~~~l~~~Gv~v~~~~~-~~~l 433 (465)
++++++++++.|+++.+++|.+..++|.|+|+++++..+ ...+...|+++||++.+.+. ++++
T Consensus 330 ~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l 409 (442)
T TIGR00709 330 AQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVF 409 (442)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEE
Confidence 999999999999999888999999999999999998211 24577788899999987653 5899
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 434 RLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 434 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
||.||+++|++|++++++++++++.++.+
T Consensus 410 ~~~Ppl~it~~ei~~~~~~l~~~l~~~~~ 438 (442)
T TIGR00709 410 RLLCPITIDQEECEEGISRFKQAVEEALA 438 (442)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987644
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=518.78 Aligned_cols=377 Identities=27% Similarity=0.452 Sum_probs=323.1
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC--C
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~--~ 155 (465)
.|+++++++|+|+||.|||+||||.+++++.+|||+||+|++|+.+|++++.+.+. .+.++...+|+++|++..+ .
T Consensus 36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 115 (460)
T PRK12403 36 GPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHY 115 (460)
T ss_pred CCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCc
Confidence 48999999999999999999999999999999999999999999999998665433 2456778999999999987 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC-
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN- 234 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 234 (465)
++++|++||+|||+.|+|+++.|+..++.+ .+..|+.+..+|||++.+++++++...+.. +.+..+++..+|+++
T Consensus 116 ~~v~f~~SGseA~e~AiklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~-~~~~~~~~~~~~~p~~ 191 (460)
T PRK12403 116 SHAIYTNSGSEANEVLIRTVRRYWQVLGKP---QKKIMIGRWNGYHGSTLAATALGGMKFMHE-MGGLIPDVAHIDEPYW 191 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCC---CCcEEEEECCCcCcccHhhhhcCCCccccc-cCCCCCCCEEeCCCcc
Confidence 899999999999999999999986432211 356788999999999999998887554432 234445555554321
Q ss_pred ----------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 235 ----------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 235 ----------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
++++++.+. .+++++||+||+++++|+++++++|+++|+++|++||++||+|||++||||+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRt 271 (460)
T PRK12403 192 YANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRT 271 (460)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 355666552 3579999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccEEEecccCCCcc-ceeeEEeCHHHHhhccC----CCCcCCCCChHHHHHHHHHHHHHhcCchHHHH
Q 012368 296 GYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINY----GDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~----~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~ 370 (465)
|.+|+++++++.|||+|+||+++||+ |+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.++
T Consensus 272 G~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~ 351 (460)
T PRK12403 272 GEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTR 351 (460)
T ss_pred chhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999995 99999999999988743 13788999999999999999999988889999
Q ss_pred HH-HHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHHHHHHCCceEeecCCCCEEEEe
Q 012368 371 VS-KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRLV 436 (465)
Q Consensus 371 ~~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~~l~~~Gv~v~~~~~~~~lRi~ 436 (465)
++ ++++++++.|+++..+++.+..++|.|+|+++++..+ ...+...|+++|+++.+.+ +.+|++
T Consensus 352 ~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~--~~~~l~ 429 (460)
T PRK12403 352 VKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTL--GRMIMA 429 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecC--CEEEEE
Confidence 96 9999999999999889999999999999999998211 1234566789999998654 568999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 437 PPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
||+++|++|+++++++|++++.++.+
T Consensus 430 Ppl~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 430 PALVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=512.57 Aligned_cols=382 Identities=43% Similarity=0.742 Sum_probs=342.2
Q ss_pred cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCC
Q 012368 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD 156 (465)
Q Consensus 77 ~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 156 (465)
+.+.|+++++++|+|+||.||++||||.+++++++|||+||+|.+|+.+++.+..+....+.++...+|+++|++..+.+
T Consensus 18 ~~~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 97 (406)
T PRK12381 18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFAD 97 (406)
T ss_pred cCCCCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCCCC
Confidence 45678999999999999999999999999999999999999999999999987544444456777899999999988888
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHH
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE 236 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 236 (465)
+|+|++||+||++.|+++++.++..++. +++.+|+.++++|||++.+++++++.+.+...+.+..+++..+|++|++
T Consensus 98 ~v~~~~sGseA~e~Alk~ar~~~~~~~~---~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (406)
T PRK12381 98 RVFFCNSGAEANEAALKLARKYAHDRYG---SHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLN 174 (406)
T ss_pred eEEEcCCcHHHHHHHHHHHHHHHhhcCC---CCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHH
Confidence 9999999999999999999998742211 1478899999999999999888888776666677777778888999999
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEeccc
Q 012368 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~ 316 (465)
++++++.+ ++++|++||+++++|+++++++|+++|+++|++||++||+||||+||||+|.+++++.+++.||++||||+
T Consensus 175 ~l~~~l~~-~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~ 253 (406)
T PRK12381 175 SASALIDD-QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKA 253 (406)
T ss_pred HHHHhccC-CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhh
Confidence 99999964 79999999999999999999999999999999999999999999999999988787888999999999999
Q ss_pred CCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
+++|+|+|++++++++++.+....+..||++||++++++.++|+.++++++.++++++++++++.|+++..+++.+..++
T Consensus 254 l~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vr 333 (406)
T PRK12381 254 LGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARYGLFSEIR 333 (406)
T ss_pred hhCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 99999999999999999999877788999999999999999999988788999999999999999999876777778899
Q ss_pred ccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 397 GLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 397 ~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.|+++++++.. ....+.+.|+++||++.+.+. +.+||+|++.+|+++|++++++|+++++++.++
T Consensus 334 g~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~-~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~~ 403 (406)
T PRK12381 334 GLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGP-NVVRFAPALNISEEEITTGLDRFARACERFVSR 403 (406)
T ss_pred cCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCCC-CEEEEeCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999843 346788899999999987654 789999999999999999999999999988765
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=517.60 Aligned_cols=394 Identities=21% Similarity=0.277 Sum_probs=334.7
Q ss_pred hhccccccchhhhccCCCCCCc-chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCH
Q 012368 39 AAASVNVEVNDAARGSAGGLGR-NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117 (465)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p 117 (465)
...|.++ +++|++++|+|+.. ..+.+ ..+.|+++++++|+++||+|||+||||.+++++.+|||+||
T Consensus 27 ~~~S~~l-~~ra~~~~p~g~~~~~~~~~-----------~~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p 94 (453)
T PRK07046 27 HPRSRAL-AARAAQHLLGGVPMHWMNDW-----------PTPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPA 94 (453)
T ss_pred ChhhHHH-HHHHHhhCCCCccccccccc-----------CCCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCH
Confidence 3567788 99999999999832 22211 02579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 012368 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197 (465)
Q Consensus 118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~ 197 (465)
+|.+|+.++++++.. ...+++...+++++|++..+.++|+|+|||+||++.|+|+||.||+ |++||.|+
T Consensus 95 ~i~~Av~~q~~~~~~--~~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TG---------r~~ii~~~ 163 (453)
T PRK07046 95 PVARALAEQARRGLT--TMLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTG---------RPKILVFN 163 (453)
T ss_pred HHHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhC---------CCEEEEEC
Confidence 999999999998643 3456788999999999988889999999999999999999999985 88999999
Q ss_pred CCcccCccccccc--cCCCCcCCCCCC----CCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 012368 198 NSFHGRTMGALAL--TSKEHYRSPFEP----VMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF 271 (465)
Q Consensus 198 ~~yhg~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~ 271 (465)
++|||+++..+.. ++.......+.+ ....+..+||||++++++++..+++++||+||+++++|+++|+++||++
T Consensus 164 g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~ 243 (453)
T PRK07046 164 GCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEA 243 (453)
T ss_pred CCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHH
Confidence 9999998665542 222211111111 1234567899999999999976689999999999999999999999999
Q ss_pred HHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---------CCCc
Q 012368 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---------GDHG 342 (465)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---------~~~~ 342 (465)
|+++|++||++||+|||++ | |.|.+...+++++.||++|+||+++||+|+|++++++++++.+.+ ..++
T Consensus 244 lr~lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~ 321 (453)
T PRK07046 244 LRELTRRYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIG 321 (453)
T ss_pred HHHHHHHhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeC
Confidence 9999999999999999999 5 456555677889999999999999999999999999999998852 1367
Q ss_pred CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC-------------C
Q 012368 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-------------S 409 (465)
Q Consensus 343 ~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-------------~ 409 (465)
+||++||++|+|++++|++++++++++++++++++|++.|+++..+++.+..+++.|+++.+.+.. +
T Consensus 322 ~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~ 401 (453)
T PRK07046 322 TTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALD 401 (453)
T ss_pred CCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccC
Confidence 899999999999999999998888999999999999999999988888888899999999888721 1
Q ss_pred ---hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 410 ---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 410 ---~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
...+...|+++||++.+.+ +.++++|+ +|++||++++++++++++++.
T Consensus 402 ~~~~~~~~~~~~~~Gv~~~~~~--~~~~~~p~--~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 402 PELEAALHLYLLNRGVLITPFH--NMMLVCPA--TTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred HHHHHHHHHHHHHCCCEEeccc--CcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence 1346677889999998743 56788764 899999999999999998764
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=516.32 Aligned_cols=394 Identities=35% Similarity=0.576 Sum_probs=335.9
Q ss_pred HHHHHHhccccccCC-------CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CC
Q 012368 65 VMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NM 136 (465)
Q Consensus 65 ~~~~~~~~~~~~~~~-------~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~ 136 (465)
+.+...++.+++|.. .|+++++++|+|+||.|||+||||.++++++++||+||+|.+|+.+|++++.+.. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~ 91 (460)
T PRK06541 12 LQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWS 91 (460)
T ss_pred HHHHhhcccccCccCccccccCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccc
Confidence 344445666665443 2688999999999999999999999999999999999999999999999875442 24
Q ss_pred CCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC
Q 012368 137 YYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (465)
Q Consensus 137 ~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (465)
+.++...+++++|++..+ .++|+|++||+||++.|+|+|+.+++.++.+ ++.+||.++++|||++.+++++++.+
T Consensus 92 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~a~s~~~~~ 168 (460)
T PRK06541 92 YAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKP---GKHKVISRAIAYHGTTQGALAITGLP 168 (460)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC---CccEEEEEcCcccCcchhhhcCcCCh
Confidence 567889999999999875 6799999999999999999999986432221 37899999999999999999988766
Q ss_pred CcCCCCCCCCCCceEeeCCC------------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012368 215 HYRSPFEPVMPGVNFVEYGN------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
.+...+.+..+++..+|+++ ++.++++++ ++++++||+||+++++|.++++++||++|+
T Consensus 169 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~ 248 (460)
T PRK06541 169 AFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVR 248 (460)
T ss_pred hhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHH
Confidence 65555666666666555332 367888875 357999999999999999999999999999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCcc-ceeeEEeCHHHHhhccCC----CCcCCCCCh
Q 012368 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYG----DHGSTFAGS 348 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~~----~~~~t~~~~ 348 (465)
++|++||++||+||||+||||+|.+|+++++++.||++|+||++++|+ |+|++++++++++.+... .+++|+++|
T Consensus 249 ~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gn 328 (460)
T PRK06541 249 EICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGH 328 (460)
T ss_pred HHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCC
Confidence 999999999999999999999999999999999999999999999996 999999999999887532 367899999
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------h-------HH
Q 012368 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS---------A-------TP 412 (465)
Q Consensus 349 ~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~---------~-------~~ 412 (465)
|+++++++++|+.++++++.+++++++++|++.|+++.. +|.+..+++.|+|+.+++..+ . ..
T Consensus 329 p~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~ 407 (460)
T PRK06541 329 PVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGF 407 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHH
Confidence 999999999999998888999999999999999998754 888889999999999998211 0 24
Q ss_pred HHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 413 VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
+...|+++||++.+.+. .+.+||+|++.+|++||++++++|++++.++..
T Consensus 408 ~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06541 408 LSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAWA 458 (460)
T ss_pred HHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 66788999999987432 278999999999999999999999999987654
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=516.51 Aligned_cols=397 Identities=24% Similarity=0.361 Sum_probs=340.6
Q ss_pred chhccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCH
Q 012368 38 VAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117 (465)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p 117 (465)
+...|.++ +++|.+++|+|++.+.+.+ .+..++.|+++++++|+|+||.|||+||||.+++++.++||+||
T Consensus 2 ~~~~s~~~-~~~a~~~~p~g~~~~~~~~--------~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p 72 (428)
T PRK12389 2 NFTKSEAL-HQEALEHIVGGVNSPSRSY--------KAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHP 72 (428)
T ss_pred CChhhHHH-HHHHHhhCCCCCCCccccc--------cccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCH
Confidence 34678888 9999999999998766532 11123578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
+|.+|+.+|++++.. ..+.++...+++++|.+..+ .++++|++||+||++.|+|+|+.||+ +.+||.+
T Consensus 73 ~v~~ai~~q~~~~~~--~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tg---------r~~ii~~ 141 (428)
T PRK12389 73 HITKAITEAAENGVL--YGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTG---------RTKIIKF 141 (428)
T ss_pred HHHHHHHHHHHhCCc--cCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEE
Confidence 999999999987644 34567889999999999875 78999999999999999999999974 8899999
Q ss_pred cCCcccCccccccccCCCCcC------CCCC-CCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHH
Q 012368 197 TNSFHGRTMGALALTSKEHYR------SPFE-PVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE 267 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~ 267 (465)
+.+|||++.++++.++...+. ..+. +..+++..+|++|+++++++++ .+++++||+||+++++|.++|+++
T Consensus 142 ~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~ 221 (428)
T PRK12389 142 AGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPG 221 (428)
T ss_pred CCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHH
Confidence 999999999988876532211 1111 2235677889999999999986 357999999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---CCCcCC
Q 012368 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGST 344 (465)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t 344 (465)
|+++|+++|++||++||+|||++|| |+|.+++++++++.||++|+||+++||+|+|++++++++++.+.+ ..+++|
T Consensus 222 yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T 300 (428)
T PRK12389 222 FLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGT 300 (428)
T ss_pred HHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccC
Confidence 9999999999999999999999999 998877888899999999999999999999999999999998853 357889
Q ss_pred CCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEecC-C-------------
Q 012368 345 FAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFDV-S------------- 409 (465)
Q Consensus 345 ~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~-~------------- 409 (465)
|++||++|+|++++|+++++++++++++++++++++.|+++.+++|.+..+ ++.| ++.+++.. .
T Consensus 301 ~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~ 379 (428)
T PRK12389 301 MAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGE 379 (428)
T ss_pred CccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHH
Confidence 999999999999999999888999999999999999999988888876666 6666 77787721 1
Q ss_pred -hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 410 -ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 410 -~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
...+.+.|+++||++.+.+. +. +.|++.+|++||+++++++++++++
T Consensus 380 ~~~~~~~~l~~~Gv~~~~~~~-~~--~~~~l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 380 AFGKFFKLMLNQGINLAPSKY-EA--WFLTTAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHHHHHCCcEeecCCC-CC--eeecCCCCHHHHHHHHHHHHHHHHh
Confidence 24678889999999987653 22 4579999999999999999999875
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-65 Score=499.71 Aligned_cols=359 Identities=40% Similarity=0.690 Sum_probs=324.3
Q ss_pred CCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCe
Q 012368 78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157 (465)
Q Consensus 78 ~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 157 (465)
...|+.+++++|+|+||.|||+||||.+++++.++||+||+|++|+.+|+++..+....+.++...+++++|++..+.++
T Consensus 4 ~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 83 (364)
T PRK04013 4 YRKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWVNYEY 83 (364)
T ss_pred cCCCccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhcCCCE
Confidence 35688999999999999999999999999999999999999999999999986655445678889999999999888889
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHH
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 237 (465)
++|++||+||++.|+|+++.+++ +++||.++.+|||++.+++++++.+.++..+.|..+++..+|++|+++
T Consensus 84 v~~~~SGseA~e~Alklar~~~g---------r~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~ 154 (364)
T PRK04013 84 VYMGNSGTEAVEAALKFARLYTG---------RKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEA 154 (364)
T ss_pred EEEeCchHHHHHHHHHHHHHHhC---------CCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHH
Confidence 99999999999999999999874 789999999999999999998887777667777778888899999999
Q ss_pred HHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccC
Q 012368 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317 (465)
Q Consensus 238 le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l 317 (465)
+++.+. +++++||+||+++++|..+++++|+++|+++|++||++||+|||++|| |+|.+|+++++++.||++|+||++
T Consensus 155 l~~~i~-~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~l 232 (364)
T PRK04013 155 AKEAIT-KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGI 232 (364)
T ss_pred HHHHhc-CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccc
Confidence 999996 479999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec
Q 012368 318 AGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG 397 (465)
Q Consensus 318 g~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 397 (465)
+||+|+|+++.++++ .+..+++||++||++|+|+.++|+.++++++.+++++. |.++ ..+.+..++|
T Consensus 233 ggG~P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~~l--~~~~v~~vRG 299 (364)
T PRK04013 233 GNGVPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------FIEI--KGERVVTTRG 299 (364)
T ss_pred cCCceeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHh--ccCcceeeee
Confidence 999999999998776 23468899999999999999999999999998888774 2233 2267889999
Q ss_pred cceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 398 LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 398 ~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.|+|+++++..+...+.+.|+++|+++.+.+. +++||.||+++|++|+++++++|+++++++.
T Consensus 300 ~Gl~~gve~~~~~~~i~~~~~~~Gll~~~~g~-~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 300 RGLMIGIVLKKPVGKYVEELQNRGYLVHTAGQ-RVIRLLPPLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcEEeeCCC-CEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence 99999999965567889999999999988764 8999999999999999999999999998753
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-65 Score=513.79 Aligned_cols=381 Identities=34% Similarity=0.556 Sum_probs=326.0
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--C
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~ 155 (465)
+.| ++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+ .
T Consensus 13 ~~p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 91 (447)
T PRK06917 13 PYP-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDL 91 (447)
T ss_pred CCC-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 446 58999999999999999999999999999999999999999999998644322 3567888999999999886 5
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee----
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE---- 231 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 231 (465)
++++|++||+||++.|+|+|+.++..++.. +|.+||.++++|||++.+++++++...+...+.+..+++..+|
T Consensus 92 ~~v~f~~sGsEAve~AlklAr~~~~~rg~t---~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (447)
T PRK06917 92 NWSFFVNSGSEANETAMKIAIQHFQERGIQ---GKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYC 168 (447)
T ss_pred CEEEEeCChHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcc
Confidence 799999999999999999999886433322 4789999999999999999988765544444444333332222
Q ss_pred -------------CCCHHHHHhhcC---CCCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC
Q 012368 232 -------------YGNIEATRKLIQ---PGKTAAVFVEPIQGE-GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294 (465)
Q Consensus 232 -------------~~d~~~le~~l~---~~~~a~vi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr 294 (465)
+++++.++++++ .+++++||+||++++ +|+++++++|+++|+++|++||++||+|||++||||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGR 248 (447)
T PRK06917 169 YRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGR 248 (447)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCc
Confidence 123567788775 247999999999985 678899999999999999999999999999999999
Q ss_pred CCccccccccCCcccEEEecccCCCcc-ceeeEEeCHHHHhhccCC----CCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 295 TGYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 295 ~g~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
+|.+|+++++++.||++|+||+++||+ |+|++++++++++.+.+. .+++||++||++++|++++|+.++++++++
T Consensus 249 tG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~ 328 (447)
T PRK06917 249 TGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPE 328 (447)
T ss_pred ccchhhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHH
Confidence 999999999999999999999999995 999999999999988542 367899999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC-------------ChHHHHHHHHHCCceEeecC------CC
Q 012368 370 SVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-------------SATPVVDACRDSGLLVLTAG------KG 430 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-------------~~~~~~~~l~~~Gv~v~~~~------~~ 430 (465)
++++++++|++.|+++..++|.+..++|.|+|+.+++.. ....+...|+++||++.+.+ .+
T Consensus 329 ~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~ 408 (447)
T PRK06917 329 KAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEG 408 (447)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCC
Confidence 999999999999999988899999999999999999821 13457788999999998753 14
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 431 NVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 431 ~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.+|++||+++|++||++++++|+++++++.++
T Consensus 409 ~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~ 441 (447)
T PRK06917 409 DAVIIAPPMTITYSELDELLSIFAKSVEEMMQK 441 (447)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999887654
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-65 Score=513.38 Aligned_cols=372 Identities=32% Similarity=0.561 Sum_probs=325.9
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CC
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD 156 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~ 156 (465)
+.|+++++++|+++||.|||+||||+++ ++.++||+||+|++|+.+|++++.+....+.++...+|+++|++..+ .+
T Consensus 53 ~~~~~i~~a~G~~l~D~dG~~ylD~~g~-~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 131 (459)
T PRK06082 53 PCLDVLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELN 131 (459)
T ss_pred CCCceEEeeeeeEEEECCCCEEEEcccH-hhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCC
Confidence 3478999999999999999999999855 78899999999999999999987654445678889999999999986 57
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee-----
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE----- 231 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 231 (465)
+++|++||+||++.|+|+|+.+++ +.+||.++++|||++.+++++++...++..+.+..+++..+|
T Consensus 132 ~v~f~~sGseAve~AlklAr~~tg---------r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (459)
T PRK06082 132 RVLFAPGGTSAIGMALKLARHITG---------NFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSY 202 (459)
T ss_pred EEEECCCcHHHHHHHHHHHHHhcC---------CCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCccc
Confidence 999999999999999999999974 789999999999999999888877666655666666665554
Q ss_pred ---CCC--------HHHHHhhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 232 ---YGN--------IEATRKLIQ-PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 232 ---~~d--------~~~le~~l~-~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+++ +++++++++ .+++++||+||+++++ .++++++|+++|+++|++||++||+|||++||||+|.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~f 281 (459)
T PRK06082 203 RGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWF 281 (459)
T ss_pred ccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh
Confidence 333 355788886 3479999999999885 667899999999999999999999999999999999999
Q ss_pred cccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 012368 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHY 377 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~ 377 (465)
+++++++.||++|+||+++|| +|+|++++++++++.+... .+ +||++||++++|++++|++++++++.+++++++++
T Consensus 282 a~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~ 360 (459)
T PRK06082 282 THQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQF 360 (459)
T ss_pred HhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999 5999999999988665322 34 79999999999999999999888999999999999
Q ss_pred HHHHHHHHHHcCCCceeeeccceEEEEEecCC----------hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHH
Q 012368 378 FKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD 447 (465)
Q Consensus 378 l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~----------~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~ 447 (465)
|++.|+++..++|.+..++|.|+|+++++..+ ...+...|+++||++.+.+. +++||+||+++|++||+
T Consensus 361 l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~-~~i~~~Ppl~it~~eid 439 (459)
T PRK06082 361 MRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQG-NVIQLSPPLIITREELT 439 (459)
T ss_pred HHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCC-CEEEEeCCCccCHHHHH
Confidence 99999999888999999999999999999311 34577888999999988643 89999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 012368 448 QAVEILCKTLPVLDSN 463 (465)
Q Consensus 448 ~~l~~l~~~l~~~~~~ 463 (465)
++++++++++.++.++
T Consensus 440 ~~~~~l~~~l~~~~~~ 455 (459)
T PRK06082 440 QALAILEEAIAKICQD 455 (459)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887654
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-65 Score=509.70 Aligned_cols=374 Identities=29% Similarity=0.475 Sum_probs=325.6
Q ss_pred eEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--CCeE
Q 012368 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--ADRV 158 (465)
Q Consensus 82 ~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~~~v 158 (465)
+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+ .++|
T Consensus 28 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v 107 (429)
T PRK06173 28 YPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKI 107 (429)
T ss_pred ceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEE
Confidence 468999999999999999999999999999999999999999999998765433 3567889999999999875 6899
Q ss_pred EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCcCCCCCCCCCCceEeeCC----
Q 012368 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYG---- 233 (465)
Q Consensus 159 ~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---- 233 (465)
+|++||+||++.|+|+|+.|+..++.+ ++.+||.+.++|||.+.+++++++. ..++..+.+..+.+.++|++
T Consensus 108 ~f~~sGseAve~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 184 (429)
T PRK06173 108 FFADSGSVAVEVAMKMALQYQQAKGEV---QRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKF 184 (429)
T ss_pred EEeCCchHHHHHHHHHHHHHHHHhCCC---CCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCccc
Confidence 999999999999999999997543322 4788999999999999988887653 33444444444555555543
Q ss_pred -------CHHHHHhhcC--CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccc
Q 012368 234 -------NIEATRKLIQ--PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303 (465)
Q Consensus 234 -------d~~~le~~l~--~~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~ 303 (465)
++++|++++. ++++++||+||+ ++++|.++++++|+++|+++|++||++||+|||++||||+|.+|++++
T Consensus 185 ~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 264 (429)
T PRK06173 185 GEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEH 264 (429)
T ss_pred chhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHh
Confidence 3667788885 458999999997 999999999999999999999999999999999999999999999999
Q ss_pred cCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-----CCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 012368 304 YGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-----GDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHY 377 (465)
Q Consensus 304 ~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-----~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~ 377 (465)
+++.|||+||||+++|| +|++++++++++++.+.+ ..+++||++||++|+|++++|+.++++++.+++++++++
T Consensus 265 ~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~ 344 (429)
T PRK06173 265 AGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQ 344 (429)
T ss_pred cCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999 599999999999998753 247789999999999999999999888899999999999
Q ss_pred HHHHHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 378 FKETLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 378 l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
|++.|+++ .+++.+..+++.|+++.+++.. ....+.+.|+++||++.+.+ +++||.||+++|++|+++++++|++
T Consensus 345 l~~~L~~~-~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~g--~~l~~~Ppl~it~~ei~~~~~~l~~ 421 (429)
T PRK06173 345 LKQELAPA-AEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRPFG--KLVYIMPPFIISPDELSQLTSGLLR 421 (429)
T ss_pred HHHHHHHh-hcCCCeeeeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEecC--CEEEEeCCccCCHHHHHHHHHHHHH
Confidence 99999875 5677778899999999999942 35678999999999998865 7999999999999999999999999
Q ss_pred HHHHhh
Q 012368 456 TLPVLD 461 (465)
Q Consensus 456 ~l~~~~ 461 (465)
++.++.
T Consensus 422 ~l~~~~ 427 (429)
T PRK06173 422 VLKQEY 427 (429)
T ss_pred HHHHHh
Confidence 998754
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-65 Score=511.05 Aligned_cols=377 Identities=33% Similarity=0.587 Sum_probs=327.9
Q ss_pred CCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--
Q 012368 78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF-- 154 (465)
Q Consensus 78 ~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~-- 154 (465)
.+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|++++.+... .+.++...+++++|++..+
T Consensus 26 ~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~ 105 (442)
T PRK13360 26 KKAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGG 105 (442)
T ss_pred cCCCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCC
Confidence 3568999999999999999999999999999999999999999999999998655433 3567778999999999875
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN 234 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (465)
.++|+|++||+||++.|+|+|+.|++.++.. ++.+||.+.++|||++.+++++++...++..+.+..+++.++|+..
T Consensus 106 ~~~v~f~~sGseA~e~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~ 182 (442)
T PRK13360 106 LNHVFFTNSGSESVDTALKIALAYHRARGEG---SRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTL 182 (442)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCc
Confidence 6799999999999999999999987433211 3678999999999999999988876666555555556666555541
Q ss_pred ------------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 235 ------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 235 ------------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
+++|++++. .+++++||+||+++++|+++++++|+++|+++|++||++||+|||++|||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~G 262 (442)
T PRK13360 183 DLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFG 262 (442)
T ss_pred hhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 457888885 35799999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-------CCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-------DHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-------~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
|+|.+++++++++.||++|+||+++|| +|+|++++++++++.+... .+++||++||++++++.++|++++++
T Consensus 263 rtG~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~ 342 (442)
T PRK13360 263 RLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE 342 (442)
T ss_pred CCccchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999988 8999999999999887532 36789999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-C------ChHHHHHHHHHCCceEeecCCCCEEEEecC
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-V------SATPVVDACRDSGLLVLTAGKGNVVRLVPP 438 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-~------~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~ 438 (465)
++.++++++++++++.|+++ .+++.+..++|.|+++.+++. . .+.++...|+++||++.+.+ +.+||+|+
T Consensus 343 ~l~~~~~~~g~~l~~~l~~l-~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~--~~lr~~Pp 419 (442)
T PRK13360 343 GLLTRAARLAPYWEDALHSL-RDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTG--DILALSPP 419 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEecC--CEEEEeCC
Confidence 89999999999999999886 457778899999999988882 1 13467888999999998764 68999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 012368 439 LIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 439 ~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+++|++|||+++++|+++++++
T Consensus 420 l~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 420 LIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred CccCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999764
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-65 Score=505.22 Aligned_cols=376 Identities=41% Similarity=0.685 Sum_probs=331.2
Q ss_pred cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCC
Q 012368 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD 156 (465)
Q Consensus 77 ~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 156 (465)
+.+.|+++++++|+++||.||++||||++++++.++||+||+|.+|+.+++++..+....+.+++..+|+++|.+..+.+
T Consensus 15 ~~~~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 94 (395)
T PRK03715 15 TNRPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSCFD 94 (395)
T ss_pred cCCCCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhccCCC
Confidence 34568899999999999999999999999999999999999999999999988665544456778899999999876678
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHH
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE 236 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 236 (465)
+++|++||+||++.|+++++.+++... +++++||.++++|||++.+++++++...+...+.|..+++...+++|++
T Consensus 95 ~v~f~~SGseA~e~Aik~ar~~~~~~~----~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~ 170 (395)
T PRK03715 95 KVFFANSGAEANEGAIKLARKWGRKHK----NGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIA 170 (395)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhccC----CCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHH
Confidence 999999999999999999998864211 1467899999999999999999887766665666666677777889999
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEeccc
Q 012368 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~ 316 (465)
++++++.+ ++++||+||+++++|.++++++|+++|+++|++||++||+||||+||||+|.+|+++++++.||++|+||+
T Consensus 171 ~l~~~l~~-~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~ 249 (395)
T PRK03715 171 SVEKLITD-KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKG 249 (395)
T ss_pred HHHHHcCC-CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhh
Confidence 99999964 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
+++|+|+|+++++++++. +.+..+++||++||+++++++++|+++++++++++++++++++++.|+++..+++ +..++
T Consensus 250 lg~G~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-i~~vr 327 (395)
T PRK03715 250 IGGGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERG-LEGER 327 (395)
T ss_pred hhCCcceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCC-cCeEE
Confidence 999999999999999863 4445678999999999999999999998889999999999999999999877776 56789
Q ss_pred ccceEEEEEecCC-hHHHHHHHHHC---CceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 397 GLGLIIGIEFDVS-ATPVVDACRDS---GLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 397 ~~g~~~~i~~~~~-~~~~~~~l~~~---Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|.|+++.+++..+ ...+.+.+.+. ||++.+... +.+||+|++.+|++||++++++|+++++++
T Consensus 328 G~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~~~-~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 328 GEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNAPRP-NLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred cceeEEEEEecCchHHHHHHHHHhccCCCEEEeecCC-CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 9999999999433 34566666666 999876544 789999999999999999999999998764
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=507.44 Aligned_cols=369 Identities=37% Similarity=0.603 Sum_probs=325.7
Q ss_pred ceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC---CC
Q 012368 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF---AD 156 (465)
Q Consensus 81 p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~---~~ 156 (465)
|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++.+... .+.++...+++++|++..+ .+
T Consensus 23 p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~ 102 (421)
T PRK06777 23 DFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPA 102 (421)
T ss_pred CeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCc
Confidence 7899999999999999999999999999999999999999999999998755322 3466778899999999875 47
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCcCCCCCCCCCCceEeeCCC-
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN- 234 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d- 234 (465)
+++|++||+||++.|+|+|+.+|+ +.+||.++++|||++.+++++++. ..++..+.|..+++.++|+++
T Consensus 103 ~~~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~ 173 (421)
T PRK06777 103 KTAFFTTGAEAVENAVKIARAYTG---------RPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNE 173 (421)
T ss_pred eEEEeCCcHHHHHHHHHHHHHhhC---------CCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc
Confidence 999999999999999999999875 788999999999999999987764 234444555556666666554
Q ss_pred ---------HHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc
Q 012368 235 ---------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301 (465)
Q Consensus 235 ---------~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~ 301 (465)
++.++++++ ++++++||+||+++++|+.+++++|+++|+++|++||++||+||||+||||+|.++++
T Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~ 253 (421)
T PRK06777 174 LHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAM 253 (421)
T ss_pred ccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhh
Confidence 667888774 3579999999999999998999999999999999999999999999999999998888
Q ss_pred cccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012368 302 EHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 302 ~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
+++++.||++|+||++++|+|+|++++++++++.+.+..+.+||++||++|+|+.++|+.+++++++++++++++++++.
T Consensus 254 ~~~~~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~ 333 (421)
T PRK06777 254 EYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEV 333 (421)
T ss_pred hhcCCCCCEEeeehhhcCCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998877788999999999999999999998889999999999999999
Q ss_pred HHHHHHcCCCceeeeccceEEEEEecCC---------hHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHH
Q 012368 382 LKQKLARNPHVKDVRGLGLIIGIEFDVS---------ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~~g~~~~i~~~~~---------~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
|+++..++|.+..+++.|+|+.+++..+ ...+...|+++||++.+++. ++++||.||+++|+++++++++
T Consensus 334 L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~ 413 (421)
T PRK06777 334 LEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALN 413 (421)
T ss_pred HHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 9999888888889999999999988321 23456667899999988753 5799999999999999999999
Q ss_pred HHHHHHH
Q 012368 452 ILCKTLP 458 (465)
Q Consensus 452 ~l~~~l~ 458 (465)
+|++++.
T Consensus 414 ~l~~~l~ 420 (421)
T PRK06777 414 ILTRLLA 420 (421)
T ss_pred HHHHHHh
Confidence 9998874
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=507.43 Aligned_cols=372 Identities=32% Similarity=0.512 Sum_probs=324.3
Q ss_pred ceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--CCe
Q 012368 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--ADR 157 (465)
Q Consensus 81 p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~~~ 157 (465)
|+.+++++|+++||.|||+||||.++++++++||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+ .++
T Consensus 26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~ 105 (428)
T PRK07986 26 VYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLEC 105 (428)
T ss_pred CeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCE
Confidence 4789999999999999999999999999999999999999999999998655433 3467889999999999886 589
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCcCCCCCCCCCCceEee-----
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVE----- 231 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----- 231 (465)
++|++||+||++.|+|+++.|+..++. ++.+||.++++|||.+.+++++++. ..+...+.+..+++.++|
T Consensus 106 v~f~~SGsEAve~AlklAr~~~~~~g~----~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 181 (428)
T PRK07986 106 VFLADSGSVAVEVAMKMALQYWQAKGE----PRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSR 181 (428)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCC----CCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcc
Confidence 999999999999999999998542221 4788999999999999998887653 223334445445544443
Q ss_pred ------CCCHHHHHhhcC--CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccc
Q 012368 232 ------YGNIEATRKLIQ--PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302 (465)
Q Consensus 232 ------~~d~~~le~~l~--~~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~ 302 (465)
++|++++++.++ ++++++||+||+ ++++|+++++++||++|+++|++||++||+|||++||||+|.+|+++
T Consensus 182 ~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~ 261 (428)
T PRK07986 182 FDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACE 261 (428)
T ss_pred cchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeec
Confidence 346788888886 457999999996 99999999999999999999999999999999999999999999999
Q ss_pred ccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-----CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 012368 303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGH 376 (465)
Q Consensus 303 ~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~ 376 (465)
++++.||++|+||+++|| +|+|++++++++++.+... .+++||++||++++|+.++|+.++++++.++++++++
T Consensus 262 ~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~ 341 (428)
T PRK07986 262 HAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEA 341 (428)
T ss_pred ccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999 6999999999999988653 3788999999999999999999988899999999999
Q ss_pred HHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 377 YFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 377 ~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
++++.|+++. +++.+..+++.|+++.+++. .....+.+.|+++||++.+.+ +++||.||+++|++||++++++|+
T Consensus 342 ~l~~~l~~l~-~~~~i~~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~g--~~i~~~Ppl~it~~ei~~~~~~l~ 418 (428)
T PRK07986 342 QLREELAPLR-DAPMVADVRVLGAIGVVETTRPVNMAALQRFFVEQGVWIRPFG--KLIYLMPPYIILPEQLQRLTAAVN 418 (428)
T ss_pred HHHHHHHHHh-cCCCEEeEeccceEEEEEeCCcccHHHHHHHHHHCCcEEEecC--CEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999874 57888899999999999984 235678899999999998765 789999999999999999999999
Q ss_pred HHHHH
Q 012368 455 KTLPV 459 (465)
Q Consensus 455 ~~l~~ 459 (465)
+++.+
T Consensus 419 ~~l~~ 423 (428)
T PRK07986 419 RAVQD 423 (428)
T ss_pred HHHhh
Confidence 99854
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=509.59 Aligned_cols=373 Identities=39% Similarity=0.734 Sum_probs=327.6
Q ss_pred ceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHhhcC--CCe
Q 012368 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--ADR 157 (465)
Q Consensus 81 p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~--~~~ 157 (465)
|+++++++|+++||.|||+||||++++++++|||+||+|.+|+.++++++.+.+ ..+.++...+|+++|++..+ .++
T Consensus 26 ~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~ 105 (433)
T PRK08117 26 NLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDC 105 (433)
T ss_pred CceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCE
Confidence 489999999999999999999999999999999999999999999998865543 23567779999999999984 689
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCcCCCCCCCCCCceEeeCC---
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYG--- 233 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--- 233 (465)
++|+|||+|||+.|+|+|+.+++ +.+||.++++|||++.+++++++. ..+...+.+..+++.++|++
T Consensus 106 v~f~~SGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (433)
T PRK08117 106 FFFSNSGAEAIEGALKLAKHVTK---------RPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCD 176 (433)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcC---------CCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccc
Confidence 99999999999999999999874 788999999999999998876642 33444445555666666553
Q ss_pred --------------CHHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 234 --------------NIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 234 --------------d~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
|+++++++++ .+++++||+||+++++|.++++++|+++|+++|++||++||+||||+||||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~ 256 (433)
T PRK08117 177 RCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRT 256 (433)
T ss_pred cccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcc
Confidence 4566777764 3579999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 012368 296 GYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKG 375 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~ 375 (465)
|.+++++++++.||++|+||++++|+|+|++++++++++.+....+++||++||++++|++++|+.++++++++++++++
T Consensus 257 G~~~~~~~~gv~pDi~t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g 336 (433)
T PRK08117 257 GEWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMG 336 (433)
T ss_pred ccchhHhhcCCCCCEeehhhhccCCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99888888999999999999999999999999999999988766788999999999999999999997788999999999
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEecC--------ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHH
Q 012368 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQEL 446 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i 446 (465)
+++++.|+++...++.+..+++.|+++++++.. ....+.+.|+++||++.+.+. ++++||+|++++|+++|
T Consensus 337 ~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i 416 (433)
T PRK08117 337 AYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEI 416 (433)
T ss_pred HHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHH
Confidence 999999999877888888999999999999821 134577888999999876543 47899999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 012368 447 DQAVEILCKTLPVLDS 462 (465)
Q Consensus 447 ~~~l~~l~~~l~~~~~ 462 (465)
++++++|+++++++.+
T Consensus 417 ~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 417 DEGLDILDEALTEYEA 432 (433)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987753
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=506.70 Aligned_cols=374 Identities=29% Similarity=0.453 Sum_probs=322.4
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--C
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~ 155 (465)
..|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+.++++++.+... .+.++...+|+++|++..+ .
T Consensus 21 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 100 (422)
T PRK05630 21 VRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGL 100 (422)
T ss_pred CCCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCc
Confidence 358999999999999999999999999999999999999999999999998665433 3467778999999999875 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCcCCCCCCCCCCceEeeCC-
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYG- 233 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 233 (465)
++++|++||+||++.|+|+|+.|+..++.+ +|.+||.+.++|||.+.+++++++. ..+...+.+..+++.++|++
T Consensus 101 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~ 177 (422)
T PRK05630 101 DHVFYSDSGSVSVEVAIKMALQYSKGQGHP---ERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPP 177 (422)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCc
Confidence 899999999999999999999997533322 4778999999999999999888753 22333344444444444332
Q ss_pred -------C----HHHHHhhcCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc
Q 012368 234 -------N----IEATRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301 (465)
Q Consensus 234 -------d----~~~le~~l~~~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~ 301 (465)
| ++.+++++. +++++||+||+ ++.+|+++++++|+++|+++|++||++||+|||++||||+|.+|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~-~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~ 256 (422)
T PRK05630 178 VRGSSPQEISEYLRSLELLID-ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFAT 256 (422)
T ss_pred ccCCChHHHHHHHHHHHHHHh-hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHH
Confidence 2 245566664 57999999996 9999999999999999999999999999999999999999999999
Q ss_pred cccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC------CCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHH
Q 012368 302 EHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKK 374 (465)
Q Consensus 302 ~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~ 374 (465)
+++++.||++|+||+++|| +|+|++++++++++.+.. ..|++||++||++|+++.++|+.++++++.++++++
T Consensus 257 ~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~ 336 (422)
T PRK05630 257 LAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRI 336 (422)
T ss_pred HhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999999 599999999999988752 147899999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHH
Q 012368 375 GHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEI 452 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~ 452 (465)
++++++.|+.+ .+++.+..+++.|+++.+++.. ....+.+.|+++|+++.+.+ +++||+||+++|++|+++++++
T Consensus 337 g~~l~~~L~~l-~~~~~v~~vRg~Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~g--~~l~~~PpL~it~~~i~~~~~~ 413 (422)
T PRK05630 337 EAELIAGLSPL-AHLPGVADVRVLGAIGVVEMEQPVDMEEATQAAVDHGVWLRPFG--RLVYVMPPYITTSEQIAQICAA 413 (422)
T ss_pred HHHHHHHHHHh-hcCCCeeeeeccccEEEEEECCcccHHHHHHHHHHCCeEEEecC--CEEEEECCccCCHHHHHHHHHH
Confidence 99999999875 4578888999999999999942 35678899999999998764 7999999999999999999999
Q ss_pred HHHHHHH
Q 012368 453 LCKTLPV 459 (465)
Q Consensus 453 l~~~l~~ 459 (465)
|+++++.
T Consensus 414 l~~al~~ 420 (422)
T PRK05630 414 LAAAVKA 420 (422)
T ss_pred HHHHHhc
Confidence 9999864
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=506.64 Aligned_cols=386 Identities=42% Similarity=0.711 Sum_probs=331.1
Q ss_pred HHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCH
Q 012368 63 KEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSI 140 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~ 140 (465)
+++.+...++..+.+. +.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++.+... .+.++
T Consensus 18 ~~l~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~ 97 (441)
T PRK05769 18 REIIERDEKYLAQSTRRWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYE 97 (441)
T ss_pred HHHHHHHHHhhCcccccCCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCH
Confidence 3344333344444443 468999999999999999999999999999999999999999999999998655433 35677
Q ss_pred HHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCc
Q 012368 141 PQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHY 216 (465)
Q Consensus 141 ~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~ 216 (465)
...+|+++|++..+ .++|+|++||+||++.|+|+|+.+|+ +++||.++++|||++.+++++++. ..+
T Consensus 98 ~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tg---------r~~Ii~~~~~yHG~t~~~ls~t~~~~~~ 168 (441)
T PRK05769 98 PAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTG---------RKYIIAFLGAFHGRTYGSLSLTASKPVQ 168 (441)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhC---------CCeEEEECCCcCCccHHHHHhcCCCccc
Confidence 78999999999875 47999999999999999999999985 789999999999999999887653 334
Q ss_pred CCCCCCCCCCceEeeCCC------------------HHHHHh-hcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012368 217 RSPFEPVMPGVNFVEYGN------------------IEATRK-LIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~d------------------~~~le~-~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
...+.+..+++..+|+++ ++.+++ +++ ++++++||+||+++++|+++++++||++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~ 248 (441)
T PRK05769 169 RKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELR 248 (441)
T ss_pred ccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHH
Confidence 445556666766665532 234666 332 457999999999999999999999999999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHH
Q 012368 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCN 353 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~ 353 (465)
++|++||+++|+|||++||||+|.+++++++++.||++|+||++++|+|+|++++++++++.+ ...+++||++||++++
T Consensus 249 ~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~-~~~~~~T~~g~p~~~a 327 (441)
T PRK05769 249 KLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFLP-PGSHANTFGGNPVAAA 327 (441)
T ss_pred HHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCCcccEEEEEehhhhhcC-CCCCCCCCCcCHHHHH
Confidence 999999999999999999999999888899999999999999999999999999999998644 3568899999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC--------hHHHHHHHHHCCceEe
Q 012368 354 AAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS--------ATPVVDACRDSGLLVL 425 (465)
Q Consensus 354 aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~--------~~~~~~~l~~~Gv~v~ 425 (465)
++.++|+++++ ++++++++++++|++.|+++..+++.+..+++.|+++.+++..+ ...+.+.|+++||++.
T Consensus 328 aa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~ 406 (441)
T PRK05769 328 AALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLL 406 (441)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEe
Confidence 99999999988 99999999999999999999888898889999999999998321 3457788899999998
Q ss_pred ecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 426 TAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 426 ~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+.+. +.+||+|++++|++||+++++++++++.++
T Consensus 407 ~~~~-~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 407 GAGK-SAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred cCCC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7655 789999999999999999999999998764
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=505.83 Aligned_cols=376 Identities=36% Similarity=0.577 Sum_probs=330.0
Q ss_pred ccccCC-CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHh
Q 012368 74 VGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVA 151 (465)
Q Consensus 74 ~~~~~~-~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 151 (465)
.+.+.+ .|+++++++|+++||.|||+||||.+++++.++||+||+|.+|+.+++++..+... .+.++...+++++|++
T Consensus 15 ~~~~~~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~ 94 (421)
T PRK09792 15 PRGVGVMCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINA 94 (421)
T ss_pred ccccccCCCeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHH
Confidence 334433 47899999999999999999999999999999999999999999999998654322 3467778999999999
Q ss_pred hcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCcCCCCCCCCCCc
Q 012368 152 CSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGV 227 (465)
Q Consensus 152 ~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (465)
..+ .++++|++||+||++.|+|+|+.+|+ +.+||.++++|||++.+++++++. ..+..++.+..+++
T Consensus 95 ~~p~~~~~~~~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~ 165 (421)
T PRK09792 95 LAPVSGQAKTAFFTTGAEAVENAVKIARAHTG---------RPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSV 165 (421)
T ss_pred hCCCCCCceEEEeCChHHHHHHHHHHHHHhcC---------CCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCc
Confidence 875 37999999999999999999999874 778999999999999999988764 23444555555666
Q ss_pred eEeeCC----------CHHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 228 NFVEYG----------NIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 228 ~~~~~~----------d~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
..+|++ ++++++++++ .+++++||+||+++++|+.+++++|+++|+++|++||++||+|||++|||
T Consensus 166 ~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~g 245 (421)
T PRK09792 166 YHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFA 245 (421)
T ss_pred EEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 666663 3578888885 35799999999999999988999999999999999999999999999999
Q ss_pred CCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHH
Q 012368 294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSK 373 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~ 373 (465)
|+|.+++++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++|+|++++|+.++++++++++++
T Consensus 246 r~G~~~a~~~~~~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~ 325 (421)
T PRK09792 246 RTGKLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQ 325 (421)
T ss_pred CCCchhHHHhcCCCCcEEEeehhhcCCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99998888999999999999999999999999999999999988777889999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------hHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcH
Q 012368 374 KGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS---------ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISE 443 (465)
Q Consensus 374 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~---------~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~ 443 (465)
+++++++.|+++.+++|.+..++|.|+++++++... ...+...|+++||++.+.+. ++.+||.|++++++
T Consensus 326 ~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~ 405 (421)
T PRK09792 326 LGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPD 405 (421)
T ss_pred HHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCH
Confidence 999999999999888998889999999999999321 35688889999999976433 58999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012368 444 QELDQAVEILCKTLP 458 (465)
Q Consensus 444 e~i~~~l~~l~~~l~ 458 (465)
+|+++++++|++++.
T Consensus 406 ~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 406 AQFDAAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999874
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=508.79 Aligned_cols=377 Identities=33% Similarity=0.581 Sum_probs=328.3
Q ss_pred CCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--
Q 012368 78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF-- 154 (465)
Q Consensus 78 ~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~-- 154 (465)
.+.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++.+.+. .+.++...+|+++|++..+
T Consensus 29 ~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~ 108 (445)
T PRK09221 29 KAAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGG 108 (445)
T ss_pred CCCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC
Confidence 3568999999999999999999999999999999999999999999999998655433 3567778999999999875
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN 234 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (465)
.++|+|++||+||++.|+|+|+.++..++.+ .+.+||.++++|||.+.+++++++.+.+...+.+..+++.++|+++
T Consensus 109 ~~~v~f~~sGseAve~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (445)
T PRK09221 109 LDHVFFTNSGSESVDTALKIALAYHRARGQG---TRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTL 185 (445)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCc
Confidence 6899999999999999999999997533221 3678999999999999999988876655555555556665555432
Q ss_pred ------------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 235 ------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 235 ------------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
+++++++++ .+++++||+||+++++|++.++++|+++|+++|++||++||+|||++|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~G 265 (445)
T PRK09221 186 DLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFG 265 (445)
T ss_pred cccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCC
Confidence 357787775 35799999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
|+|.+|+++++++.||++|+||++++| +|+|++++++++++.+.. ..+++||++||+++++++++|+.++++
T Consensus 266 RtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~ 345 (445)
T PRK09221 266 RLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE 345 (445)
T ss_pred cCchhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998 799999999999988743 136789999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC-------ChHHHHHHHHHCCceEeecCCCCEEEEecC
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-------SATPVVDACRDSGLLVLTAGKGNVVRLVPP 438 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-------~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~ 438 (465)
++.++++++++++++.|+++ .+++.+..+++.|++..+++.. ....+.+.|+++||++.+.+ +.+||+|+
T Consensus 346 ~l~~~~~~~g~~l~~~l~~l-~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~--~~lr~~Pp 422 (445)
T PRK09221 346 DLFERAAELAPYFEDAVHSL-KGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYTG--DTIALSPP 422 (445)
T ss_pred cHHHHHHHHHHHHHHHHHhh-ccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeecC--CEEEEECC
Confidence 99999999999999999987 4678788999999999998831 13468889999999998754 78999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 012368 439 LIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 439 ~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+++|++||++++++|++++.++
T Consensus 423 l~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 423 LIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999764
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-64 Score=508.50 Aligned_cols=408 Identities=34% Similarity=0.554 Sum_probs=358.0
Q ss_pred hhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhh
Q 012368 50 AARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV 129 (465)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~ 129 (465)
..++...++++.++.+++.+.++..+.|.+.|+++++++|+|+||.||++||||++++++.++||+||+|++|+.+++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~ 106 (474)
T PLN02624 27 LPEGSAPSLSDSSAHLIELEEKYSAHNYHPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEK 106 (474)
T ss_pred CCCCCCCCCCcchHHHHHHHHHhhccccCCCCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence 33444555677788888888888777787889999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc
Q 012368 130 LTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA 209 (465)
Q Consensus 130 ~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~ 209 (465)
+.+.+..+.++...+|+++|++.++.++++|++||+||++.|+|+++.++....+. ...+.+||.+.++|||++.++++
T Consensus 107 ~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~-~~~~~~ii~~~~~yHG~t~~~~s 185 (474)
T PLN02624 107 LTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGI-PKNEAIIVSCCGCFHGRTLAAIS 185 (474)
T ss_pred cCCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCC-CCCCcEEEEECCCcCCCCHHHhh
Confidence 76655556778899999999999888899999999999999999999875211100 00245799999999999999999
Q ss_pred ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012368 210 LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
+++.+.+...+.|..+++.++|++|++.++++++ ..++++|++||+++++|.++++++||++|+++|++||++||+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DE 265 (474)
T PLN02624 186 MSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADE 265 (474)
T ss_pred cCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 8877766666777778888899999999999996 35799999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 288 v~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
||+||||+|.+++.+++++.||++++||++++| +|+|++++++++++.+.+..++.||++||++++++.++|+.+++++
T Consensus 266 v~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~ 345 (474)
T PLN02624 266 IQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEK 345 (474)
T ss_pred cccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhch
Confidence 999999999988888889999999999999987 8999999999999988777788999999999999999999988788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CceeeeccceEEEEEecC------ChHHHHHHHHHCCceEeecCCCCEEEEecCC
Q 012368 367 FLASVSKKGHYFKETLKQKLARNP-HVKDVRGLGLIIGIEFDV------SATPVVDACRDSGLLVLTAGKGNVVRLVPPL 439 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~------~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~ 439 (465)
+.+++.++++++++.|+++..+++ .+..+++.|+++.++++. .+.++++.|+++||++.+.+. +++||+|++
T Consensus 346 l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~~-~~lR~~p~l 424 (474)
T PLN02624 346 LAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHD-TIIRLAPPL 424 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCCC-CEEEEECCc
Confidence 999999999999999999877777 466788999999988842 135788899999999998764 889999999
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 012368 440 IISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 440 ~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+|+++|++++++|++++.+
T Consensus 425 ~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 425 SISEDELQECSKALSDVLEH 444 (474)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-64 Score=507.80 Aligned_cols=394 Identities=32% Similarity=0.584 Sum_probs=334.1
Q ss_pred chHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 012368 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY 138 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~ 138 (465)
+++++.++..++....+. ..|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++.+.. ..+.
T Consensus 16 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~ 95 (451)
T PRK06918 16 KAASLLERRQNIVPKGVSNGIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVMM 95 (451)
T ss_pred CHHHHHHHHHHhhccccccCCCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccccccc
Confidence 344455444444443332 34789999999999999999999999999999999999999999999999865542 2345
Q ss_pred CHHHHHHHHHHHhhcC--C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-C
Q 012368 139 SIPQIELAKRLVACSF--A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-E 214 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~--~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~ 214 (465)
++...+++++|++..+ . ++|+|++||+||++.|+|+||.+|+ +.+||.++++|||++.+++++++. .
T Consensus 96 ~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~ls~~~~~~ 166 (451)
T PRK06918 96 YEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTK---------RQGIISFSRGFHGRTLMTMTMTSKVK 166 (451)
T ss_pred cHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhC---------CCcEEEECCCcCccchhhhhhcCCCc
Confidence 7779999999999986 2 6999999999999999999999985 788999999999999999987764 2
Q ss_pred CcCCCCCCCCCCceEeeCCC-----------------HHHHHhhc----CCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012368 215 HYRSPFEPVMPGVNFVEYGN-----------------IEATRKLI----QPGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l----~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
.++..+.+..+++.++|+++ ++.+++.+ .++++++||+||+++++|.++++++|+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~ 246 (451)
T PRK06918 167 PYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVR 246 (451)
T ss_pred cccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHH
Confidence 34444555556665555432 12344433 3468999999999999999999999999999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHH
Q 012368 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCN 353 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~ 353 (465)
++|++||++||+||||+||||+|.+++++.+++.||+++|||++++|+|+||+++++++++.+.+..+.+||++||++|+
T Consensus 247 ~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~a 326 (451)
T PRK06918 247 NICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCA 326 (451)
T ss_pred HHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHH
Confidence 99999999999999999999999888888899999999999999999999999999999999877778899999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec------C----ChHHHHHHHHHCCce
Q 012368 354 AAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD------V----SATPVVDACRDSGLL 423 (465)
Q Consensus 354 aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~------~----~~~~~~~~l~~~Gv~ 423 (465)
++.++|+.++++++.+++++.+++++++|+++..+++.+..+++.|+++.+++. . ....+.+.|+++||+
T Consensus 327 aa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvl 406 (451)
T PRK06918 327 AALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLL 406 (451)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeE
Confidence 999999999888999999999999999999987778878889999999998872 1 134577778899999
Q ss_pred EeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 424 VLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 424 v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.+++. ++++||+|++++|+++|++++++|++++.++...
T Consensus 407 v~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~~ 447 (451)
T PRK06918 407 LLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQACYEK 447 (451)
T ss_pred EeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHHh
Confidence 988642 5789999999999999999999999999887544
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-64 Score=506.33 Aligned_cols=372 Identities=37% Similarity=0.598 Sum_probs=326.1
Q ss_pred CCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--
Q 012368 78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF-- 154 (465)
Q Consensus 78 ~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~-- 154 (465)
++.|+++++++|+++||.|||+||||.+++++.++||+||+|.+|+.++++++.+... ...++...+++++|++..+
T Consensus 13 ~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~ 92 (420)
T TIGR00700 13 VTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGS 92 (420)
T ss_pred CCCCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999999999999999999999999998655332 2456778899999999875
Q ss_pred -CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-CcCCCCCCCCCCceEeeC
Q 012368 155 -ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 155 -~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 232 (465)
.++++|++||+||++.|+|+|+.+|+ +.+||.++++|||++.+++++++.. .+...+.++.+++..+|+
T Consensus 93 ~~~~v~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (420)
T TIGR00700 93 GPKKSVFFNSGAEAVENAVKIARSYTG---------RPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPL 163 (420)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHhcC---------CCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCC
Confidence 47999999999999999999999975 7789999999999999999877642 234445555566655554
Q ss_pred C----------------CHHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 233 G----------------NIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 233 ~----------------d~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
+ +++.+++++. ++++++||+||+++++|+++++++|+++|+++|++||++||+||||+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~ 243 (420)
T TIGR00700 164 PYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGF 243 (420)
T ss_pred CccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 2 2567777763 4689999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHH
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVS 372 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~ 372 (465)
||+|.+++++++++.||+++|||++++|+|+||+++++++++.+....+.+||++||++|+|++++|+.++++++.++++
T Consensus 244 gr~g~~~a~~~~~~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~ 323 (420)
T TIGR00700 244 ARTGAMFACEHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERAR 323 (420)
T ss_pred cccchhHHHhhcCCCCCEEEeeccccCCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99998888888999999999999999999999999999999998777788999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-C----C----hHHHHHHHHHCCceEeecCC-CCEEEEecCCCCc
Q 012368 373 KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-V----S----ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIIS 442 (465)
Q Consensus 373 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-~----~----~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t 442 (465)
+.++++++.|+++...+|.+..+++.|+|+++++. . + ...+.+.|+++||++.|++. ++++||+|+++++
T Consensus 324 ~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~ 403 (420)
T TIGR00700 324 QIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIG 403 (420)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcC
Confidence 99999999999998888888899999999999882 1 1 34567777899999988653 5799999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012368 443 EQELDQAVEILCKTLP 458 (465)
Q Consensus 443 ~e~i~~~l~~l~~~l~ 458 (465)
++++++++++|.+++.
T Consensus 404 ~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 404 DELLSEGLDILCAILA 419 (420)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=503.68 Aligned_cols=388 Identities=34% Similarity=0.602 Sum_probs=333.6
Q ss_pred HHHHHHHhccccccC--CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCH
Q 012368 64 EVMEAEKKLLVGTYN--RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSI 140 (465)
Q Consensus 64 ~~~~~~~~~~~~~~~--~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~ 140 (465)
++++++.++..+.|. ..|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~ 84 (443)
T PRK08360 5 EIIERYSKVISPANRVTYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPV 84 (443)
T ss_pred HHHHHHHHhcccccccccCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccccCcH
Confidence 344445555555553 568999999999999999999999999999999999999999999999998765433 34467
Q ss_pred HHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-CcC
Q 012368 141 PQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYR 217 (465)
Q Consensus 141 ~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~ 217 (465)
...+|+++|++..+ .++|+|++||+||++.|+|+|+.||+ +.+|+.+.++|||++.+++++++.. .+.
T Consensus 85 ~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tg---------r~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 155 (443)
T PRK08360 85 EPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTK---------RRKILSYLRSYYGSTYGAMSLTGLDFPVR 155 (443)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcC---------CCeEEEEeCCcCCcCHHHHHhcCCCcccc
Confidence 78999999999886 47999999999999999999999985 7899999999999999888876632 233
Q ss_pred CCCCCCCCCceEeeCCC-----------------HHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 218 SPFEPVMPGVNFVEYGN-----------------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 218 ~~~~~~~~~~~~~~~~d-----------------~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
..+.+ .+++.++|+++ ++.++++++ .+++++||+||+++++|.++++++|+++|+++|
T Consensus 156 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~ 234 (443)
T PRK08360 156 ALVGE-LSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKIL 234 (443)
T ss_pred cCCCC-CCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence 33344 34555565543 345666664 357999999999999999999999999999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHH
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~ 356 (465)
++||++||+||||+||||+|.+++.+++++.||++|+||++++|+|+|++++++++++.+....+.+|+++||++|+++.
T Consensus 235 ~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~ 314 (443)
T PRK08360 235 DEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAAL 314 (443)
T ss_pred HHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHH
Confidence 99999999999999999999888888889999999999999999999999999999999876668889999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCceEee
Q 012368 357 AVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLT 426 (465)
Q Consensus 357 a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~ 426 (465)
++|+.++++++.++++++++++++.|+++..+++.+..+++.|+++++++.. .+..+...|+++|+++.+
T Consensus 315 a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 394 (443)
T PRK08360 315 AVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTF 394 (443)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEee
Confidence 9999998888999999999999999999888889889999999999999831 124678889999999876
Q ss_pred cCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 427 AGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 427 ~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+. +.+||+||+++|++||++++++++++++.+++
T Consensus 395 ~~~-~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 395 FSG-NVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred cCC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 543 88999999999999999999999999987753
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=503.97 Aligned_cols=376 Identities=35% Similarity=0.554 Sum_probs=327.2
Q ss_pred ccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHh
Q 012368 74 VGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVA 151 (465)
Q Consensus 74 ~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 151 (465)
.+.|. +.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+++++..+... .+.++...+|+++|++
T Consensus 10 ~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 89 (412)
T TIGR02407 10 VRSYCRSFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNE 89 (412)
T ss_pred HhccCCCCCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHH
Confidence 33444 478999999999999999999999999999999999999999999999986444322 2456778899999998
Q ss_pred hc--C--C-CeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC
Q 012368 152 CS--F--A-DRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP 225 (465)
Q Consensus 152 ~~--~--~-~~v~~-~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
.. + . ++++| +|||+||++.|+|+|+.+++ |.+||.++++|||++.+++++++...+...+.+..+
T Consensus 90 ~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~ 160 (412)
T TIGR02407 90 IILKPRGLDYKVQFPGPTGTNAVESALKLARKVTG---------RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLS 160 (412)
T ss_pred hccCccCCCceEEEeCCCchHHHHHHHHHHhhhcC---------CCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCC
Confidence 74 2 2 35666 59999999999999999874 789999999999999999998876665655655556
Q ss_pred CceEeeCC--------CHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 226 GVNFVEYG--------NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 226 ~~~~~~~~--------d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
++.++|++ +++.+++++.. +++++||+||+++++|+++++++|+++|+++|++||++||+||||+||
T Consensus 161 ~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~ 240 (412)
T TIGR02407 161 NVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGC 240 (412)
T ss_pred CeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 77777774 47788888852 468999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCcccEEEecccCCC-ccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-hcCchHHHH
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-ISNPAFLAS 370 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-~~~~~~~~~ 370 (465)
||+|.+++++++++.||++++||++++ |+|+|++++++++ +.+.+..+.+||++||++++++.++|+. ++++++.++
T Consensus 241 GRtG~~~a~~~~~v~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~ 319 (412)
T TIGR02407 241 GRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKA 319 (412)
T ss_pred CccchhHHhcccCCCCCEEEechhccCCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999999999999999998 9999999999887 6666667889999999999999999995 777889999
Q ss_pred HHHHHHHHHHHHHHHHHcCC-CceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHH
Q 012368 371 VSKKGHYFKETLKQKLARNP-HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQEL 446 (465)
Q Consensus 371 ~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i 446 (465)
+++++++++++|+++...++ .+..+++.|++++++++. ....+...|+++||++.+.+. ++.+||+|++++|++|+
T Consensus 320 ~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i 399 (412)
T TIGR02407 320 VQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETL 399 (412)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEEecChHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHH
Confidence 99999999999999888887 567899999999999943 245788999999999987653 47899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 012368 447 DQAVEILCKTLPV 459 (465)
Q Consensus 447 ~~~l~~l~~~l~~ 459 (465)
++++++|++++++
T Consensus 400 ~~~~~~l~~~l~~ 412 (412)
T TIGR02407 400 QQGLDILEQAVEE 412 (412)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998853
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=500.69 Aligned_cols=395 Identities=20% Similarity=0.306 Sum_probs=334.2
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012368 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
.+|..+ +++|.+++|+|+.+..+.+ ....+.|+++++++|+++||.|||+||||.+++++.+|||+||+|
T Consensus 5 ~~s~~l-~~~a~~~~p~g~~~~~~~~---------~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v 74 (433)
T PRK00615 5 QEMTHT-FSEACQYFPGGVNSPVRAC---------RSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKI 74 (433)
T ss_pred HHHHHH-HHHHHhhCCCCcCCCcccc---------cccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHH
Confidence 577788 9999999999998887732 123468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 012368 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~ 197 (465)
.+|+.+++++... ....++...+|+++|.+..+ .++|+|++||+||++.|+|+||.+|+ |.+||.+.
T Consensus 75 ~~ai~~q~~~~~~--~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tg---------r~~ii~~~ 143 (433)
T PRK00615 75 CDAIQQGAERGTS--YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITG---------RSIIIKFL 143 (433)
T ss_pred HHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhC---------CCEEEEEc
Confidence 9999999987543 34567788999999999886 46999999999999999999999985 78999999
Q ss_pred CCcccCc---cccccccCCCCcC--CCC--CCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHH
Q 012368 198 NSFHGRT---MGALALTSKEHYR--SPF--EPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEF 268 (465)
Q Consensus 198 ~~yhg~~---~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~ 268 (465)
++|||++ ...++.++..... ..+ .+..+....++++|++++++++. .+++++||+||+++++|.++|+++|
T Consensus 144 ~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~y 223 (433)
T PRK00615 144 GCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGF 223 (433)
T ss_pred CccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHH
Confidence 9999998 4444444322111 111 11123345678899999999985 3579999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC---CCcCCC
Q 012368 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTF 345 (465)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~ 345 (465)
+++|+++|++||++||+|||++|| |+|.+++++++++.||++|+||++|||+|+|++++++++++.+.+. .+.+||
T Consensus 224 l~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~ 302 (433)
T PRK00615 224 IEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTL 302 (433)
T ss_pred HHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCC
Confidence 999999999999999999999999 8998888999999999999999999999999999999999988532 367899
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC-ceeeeccceEEEEEecCC---------------
Q 012368 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDVS--------------- 409 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~i~~~~~--------------- 409 (465)
++||++++|++++|++++++++++++++++++++++|++++.+.+. +..++ .|+++.+++..+
T Consensus 303 ~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~ 381 (433)
T PRK00615 303 SGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEA 381 (433)
T ss_pred cccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-eceEEEEEEeCCCCCChHHHhhCCHHH
Confidence 9999999999999999988889999999999999999998776432 55566 899999999311
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
...+...|+++||++.+...+. ..++..||++|||+++++++++++++
T Consensus 382 ~~~~~~~l~~~Gv~~~~~~~~~---~~ls~~ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 382 FQTFYQSAFSKGVYLSPSPFEA---SFLSSAHSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred HHHHHHHHHHCCeeecCccccc---cceecCCCHHHHHHHHHHHHHHHHHH
Confidence 1257888999999998764322 25678999999999999999999875
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=501.01 Aligned_cols=376 Identities=34% Similarity=0.548 Sum_probs=328.0
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--C
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~ 155 (465)
+.|+++++++|+++||.|||+||||.++++++++||+||+|.+|+.++++++.+... .+.++...+|+++|++..+ .
T Consensus 23 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~ 102 (423)
T PRK05964 23 PPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGL 102 (423)
T ss_pred CCCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999999999999999999999999999998655433 4567788999999999885 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC--C
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--G 233 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 233 (465)
++++|++||+||++.|+|+||.|+..++.. ++.+||.++++|||++.+++++++...+...+.+...++.++++ +
T Consensus 103 ~~v~f~~sGseA~e~A~klar~~~~~~~~~---~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (423)
T PRK05964 103 DHVFFSDSGSVAVEVALKMALQYWRNRGEP---GRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPD 179 (423)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcc
Confidence 899999999999999999999986433221 47899999999999999999888765555445554455555554 4
Q ss_pred C-----HHHHHhhcC--CCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccC
Q 012368 234 N-----IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305 (465)
Q Consensus 234 d-----~~~le~~l~--~~~~a~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~ 305 (465)
| ++++++++. .+++++||+|| +++++|+.+++++|+++|+++|++||++||+||||+||||+|.++++++++
T Consensus 180 d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~ 259 (423)
T PRK05964 180 GYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAG 259 (423)
T ss_pred hhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcC
Confidence 5 888888885 45799999999 699999999999999999999999999999999999999999988889999
Q ss_pred CcccEEEecccCCCc-cceeeEEeCHHHHhhccCC------CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012368 306 IFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 306 ~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
+.||++++||+++|| +|+|++++++++++.+... .+++||++||++++|+.++|+.++++++.++++++++++
T Consensus 260 v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l 339 (423)
T PRK05964 260 VSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGL 339 (423)
T ss_pred CCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999988 8999999999999987431 467899999999999999999998888999999999999
Q ss_pred HHHHHHHHHcCCCceeeeccceEEEEEecC-C----hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 379 KETLKQKLARNPHVKDVRGLGLIIGIEFDV-S----ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-~----~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
++.|+++ ..++.+..+++.|+++.+++.. . ...+.+.|+++||++.+.+ +.+||+|++++|++|||+++++|
T Consensus 340 ~~~l~~l-~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~--~~lR~~p~l~~t~edId~~v~~l 416 (423)
T PRK05964 340 AEGLEPF-RDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLG--NTIYLMPPYIITAEELDRITDAI 416 (423)
T ss_pred HHHHHhh-ccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecC--CEEEEeCCcccCHHHHHHHHHHH
Confidence 9999887 4577777889999999999842 2 5578899999999998764 68999999999999999999999
Q ss_pred HHHHHHh
Q 012368 454 CKTLPVL 460 (465)
Q Consensus 454 ~~~l~~~ 460 (465)
+++++++
T Consensus 417 ~~al~~~ 423 (423)
T PRK05964 417 VEVADEL 423 (423)
T ss_pred HHHHhhC
Confidence 9999764
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=499.71 Aligned_cols=379 Identities=36% Similarity=0.570 Sum_probs=326.7
Q ss_pred ccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHh
Q 012368 74 VGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVA 151 (465)
Q Consensus 74 ~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 151 (465)
.+.|. +.|+++++++|+|+||.|||+||||.+++++.+|||+||+|.+|+.+|+++..+... .+.++...+|+++|++
T Consensus 14 ~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 93 (425)
T PRK09264 14 VRSYCRSFPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEE 93 (425)
T ss_pred HhccCCCCCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 33443 468999999999999999999999999999999999999999999999987443322 3456778899999998
Q ss_pred hc--C--CC-eEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC
Q 012368 152 CS--F--AD-RVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP 225 (465)
Q Consensus 152 ~~--~--~~-~v~~-~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
.. + .+ +++| +|||+||++.|+|+|+.+++ +.+||.++++|||++.+++++++...++..+.+..+
T Consensus 94 ~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~ 164 (425)
T PRK09264 94 TILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTG---------RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLN 164 (425)
T ss_pred hhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcC---------CCeEEEECCccCCccHHHHHhcCCcccccCCCCCCC
Confidence 64 2 33 6766 58999999999999999974 788999999999999999998876655555555556
Q ss_pred CceEeeCC--------CHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 226 GVNFVEYG--------NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 226 ~~~~~~~~--------d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
++.++|++ |+++++++++. +++++||+||+++++|+++++++||++|+++|++||++||+||||+||
T Consensus 165 ~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~ 244 (425)
T PRK09264 165 NVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGC 244 (425)
T ss_pred CeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCC
Confidence 77777774 77889998852 368999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCcccEEEecccCCC-ccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHH-HHhcCchHHHH
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL-DKISNPAFLAS 370 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L-~~~~~~~~~~~ 370 (465)
||+|.+++++++++.||++|+||++++ |+|+|++++++++. .+....+.+||++||++++++.++| +.++++++.++
T Consensus 245 GrtG~~~~~~~~~v~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~ 323 (425)
T PRK09264 245 GRTGTFFSFERAGITPDIVTLSKSISGYGLPMALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKE 323 (425)
T ss_pred ccccHHHHHhhcCCCCCEEEeccccCCCccceEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999998889999999999999999998 89999999999874 5655567889999999999999999 56666789999
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-ceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHH
Q 012368 371 VSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQEL 446 (465)
Q Consensus 371 ~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i 446 (465)
++++++++++.|+++..++|. +..+++.|++++++++. ....+.+.|+++||++.+.+. +..+||+|++++|++++
T Consensus 324 ~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei 403 (425)
T PRK09264 324 VKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEEL 403 (425)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHH
Confidence 999999999999998777774 46789999999999942 245788999999999987653 47899999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 012368 447 DQAVEILCKTLPVLDS 462 (465)
Q Consensus 447 ~~~l~~l~~~l~~~~~ 462 (465)
++++++|+++++++.+
T Consensus 404 ~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 404 EEGLDILEEAVAEVLA 419 (425)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987653
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-63 Score=493.93 Aligned_cols=379 Identities=48% Similarity=0.816 Sum_probs=336.3
Q ss_pred cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCC
Q 012368 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD 156 (465)
Q Consensus 77 ~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 156 (465)
|.+.|+++++++|+++||.||++||||.++++++++||+||+|.+|+.+++++..+....+.++...+++++|++..+.+
T Consensus 10 ~~~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 89 (389)
T PRK01278 10 YNRADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSFAD 89 (389)
T ss_pred cCCCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCCCC
Confidence 45678999999999999999999999999999999999999999999999987554444456777899999999988888
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHH
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE 236 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 236 (465)
+|+|++||+||++.|+++++.++...+. +++++||+++++|||++..++..++.+.+...+.+..+++..+|++|++
T Consensus 90 ~v~~~~sGseA~~~al~~ar~~~~~~G~---~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 166 (389)
T PRK01278 90 KVFFTNSGAEAVECAIKTARRYHYGKGH---PERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIE 166 (389)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHhcCC---CCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHH
Confidence 9999999999999999999987532211 1356899999999999999988887665554455555667778999999
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEeccc
Q 012368 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~ 316 (465)
++++++++ ++++|++||+++++|..+++++++++|+++|++||++||+||||+|||++|.+++.+++++.||++||||+
T Consensus 167 ~l~~~l~~-~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~ 245 (389)
T PRK01278 167 ALKAAITP-NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKG 245 (389)
T ss_pred HHHHhhCC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehh
Confidence 99999975 79999999999999988899999999999999999999999999999999987777788999999999999
Q ss_pred CCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-Cceee
Q 012368 317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKDV 395 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~ 395 (465)
+++|+|+|++++++++++.+....+..||++||++++|+.++|+.++++++.+++++++++++++|+++...++ .+..+
T Consensus 246 l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v 325 (389)
T PRK01278 246 IGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEV 325 (389)
T ss_pred ccCCcceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeE
Confidence 99999999999999999998877788999999999999999999987778889999999999999999877777 67788
Q ss_pred eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 396 RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 396 ~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++.|.++++++..+..++++.|+++||++.|++. +.+||+|+++++++++++++++|+++++++
T Consensus 326 ~g~G~~~~i~~~~~~~~~~~~l~~~GV~~~p~~~-~~lR~~p~~~~~~~~i~~~l~~l~~~l~~~ 389 (389)
T PRK01278 326 RGKGLLLGLKCVVPNRDLVQALRDEGLLTVGAGD-NVVRLLPPLIITEEEIDEALERLERAAESL 389 (389)
T ss_pred ecccEEEEEEEecCHHHHHHHHHHCCeEEeecCC-CEEEEeCCcccCHHHHHHHHHHHHHHHHhC
Confidence 9999999988855678899999999999998765 789999999999999999999999988653
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-63 Score=495.35 Aligned_cols=389 Identities=37% Similarity=0.629 Sum_probs=338.9
Q ss_pred HHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHH
Q 012368 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 142 (465)
+++++...++..+.|.+.|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+.++++++.+.+....++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~ 84 (396)
T PRK04073 5 EKIIELTNHYGAHNYHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFHSDQL 84 (396)
T ss_pred HHHHHHHHHhcccccCCCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHH
Confidence 34555555555556667899999999999999999999999999999999999999999999999987655445567778
Q ss_pred HHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhc-CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCC
Q 012368 143 IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS-NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFE 221 (465)
Q Consensus 143 ~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~-~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 221 (465)
.+|+++|++..+.++++|++||+||++.|+++++.++... +.. +++++||.++.+|||++..++++++.+.+...+.
T Consensus 85 ~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~--~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~ 162 (396)
T PRK04073 85 GPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVE--PNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFG 162 (396)
T ss_pred HHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCC--CCCCEEEEECCCcCCCCHHHHhhcCCcccccCCC
Confidence 9999999998888899999999999999999999874211 100 1467899999999999999988887666555566
Q ss_pred CCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc
Q 012368 222 PVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301 (465)
Q Consensus 222 ~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~ 301 (465)
+..+++.++|++|++++++++++ ++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|||++|..++.
T Consensus 163 ~~~~~~~~~~~~d~~~l~~~i~~-~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~ 241 (396)
T PRK04073 163 PMLPGIKKIPYGDLEALKAAITP-NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFAC 241 (396)
T ss_pred CCCCCceEeCCCCHHHHHHhccc-CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHh
Confidence 76777888999999999999964 68999999999999999999999999999999999999999999999999987777
Q ss_pred cccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 012368 302 EHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKE 380 (465)
Q Consensus 302 ~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~ 380 (465)
+.+++.||+++|||++++| +|+|++++++++++.+....+..||++||++++|++++|+.++++++.++++++++++.+
T Consensus 242 ~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~ 321 (396)
T PRK04073 242 DWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKE 321 (396)
T ss_pred hhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7889999999999999975 999999999999999877678889999999999999999988777888999999999999
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.|+++ ..+.+..+++.|+|+++++...+.++.+.|+++||++.+.+. +++||+||+.+|++++++++++|++++
T Consensus 322 ~L~~l--~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 322 QLKEI--DNPMIKEVRGRGLFIGVELNEPARPYCEALKEEGLLCKETHE-TVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred HHHhh--cCCcccceecceEEEEEEecchHHHHHHHHHHCCeEEecCCC-CEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 99885 345566788999999998865677899999999999987654 789999999999999999999999875
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=538.00 Aligned_cols=385 Identities=30% Similarity=0.483 Sum_probs=329.7
Q ss_pred HHHHHHHHhccccccC---CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC
Q 012368 63 KEVMEAEKKLLVGTYN---RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~---~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~ 139 (465)
..+.+.+.++..+.+. +.|+++++|+|+|+||.|||+||||.++. .++||+||+|.+|+.+|++++.. ...+.+
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~-~~~~~~ 662 (1013)
T PRK06148 586 AEILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNT-NTRYLH 662 (1013)
T ss_pred HHHHHHHHHhcCcccccccCCCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCC-cCCcCC
Confidence 3445555555555544 77999999999999999999999999985 67999999999999999988632 235678
Q ss_pred HHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcC
Q 012368 140 IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR 217 (465)
Q Consensus 140 ~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 217 (465)
+...+++++|++.++ .++++|+|||+||++.|+|+|+.+|+ +.+||.++.+|||++.+++++++.. +.
T Consensus 663 ~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tG---------r~~ii~~~~~YHG~t~~a~s~s~~~-~~ 732 (1013)
T PRK06148 663 DAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTG---------QRDAIVLDHAYHGTTTELIDLSPYK-FN 732 (1013)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcC---------CCeEEEEcCCccCCCcchhhcCchh-hc
Confidence 889999999999886 58999999999999999999999985 7889999999999999998877632 22
Q ss_pred CCCCCC-CCCc--------eEeeCC--C-------HHHHHhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 012368 218 SPFEPV-MPGV--------NFVEYG--N-------IEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (465)
Q Consensus 218 ~~~~~~-~~~~--------~~~~~~--d-------~~~le~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~ 274 (465)
.++.+. .+++ ...|++ | .+.++++++ ++++++||+||+++++|+++++++||++|++
T Consensus 733 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~ 812 (1013)
T PRK06148 733 RKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYA 812 (1013)
T ss_pred ccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHH
Confidence 222211 1222 223444 2 134555553 3579999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCCCCCCc-cccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC-CCcCCCCChHHHH
Q 012368 275 ACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG-DHGSTFAGSPLVC 352 (465)
Q Consensus 275 l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~-~~~~t~~~~~~~~ 352 (465)
+|++||+++|+|||+|||||+|. +|+++++++.|||+|+||++|||+|+|++++++++++.+.++ .+.+||++||++|
T Consensus 813 lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~ 892 (1013)
T PRK06148 813 MVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSC 892 (1013)
T ss_pred HHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCCcceEEEEEcHHHHhhccCCCccccCCCCCHHHH
Confidence 99999999999999999999997 889999999999999999999999999999999999988765 3789999999999
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC------C----hHHHHHHHHHCCc
Q 012368 353 NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV------S----ATPVVDACRDSGL 422 (465)
Q Consensus 353 ~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~------~----~~~~~~~l~~~Gv 422 (465)
+|++++|++++++++++++++++++|++.|+++.+++|.+..++|.|+|+++++.. . ...+...|+++||
T Consensus 893 aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gv 972 (1013)
T PRK06148 893 AIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGI 972 (1013)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCe
Confidence 99999999999899999999999999999999999999999999999999999831 1 3457888999999
Q ss_pred eEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 423 LVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 423 ~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++.+.+. ++++||.||+++|++++|+++++|++++.++
T Consensus 973 l~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 973 LIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred EEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 9987653 5899999999999999999999999999875
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-61 Score=483.19 Aligned_cols=380 Identities=42% Similarity=0.751 Sum_probs=332.9
Q ss_pred ccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC
Q 012368 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA 155 (465)
Q Consensus 76 ~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 155 (465)
.|.+.|+++++++|+++||.||++||||++++++.+|||+||+|.+|+.+++++..+....+.++...+++++|++..+.
T Consensus 18 ~~~~~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 97 (403)
T PRK05093 18 NYAPAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATFA 97 (403)
T ss_pred hcCCCCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCCC
Confidence 35678999999999999999999999999999999999999999999999998754433334566788999999998877
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (465)
++++|++||+|||+.|+++++.++..++. ..+++||.++.+|||++..++++++.+.+...+.+...++.++|++|+
T Consensus 98 ~~~~~~~sGseA~e~a~klar~~~~~~~~---~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 174 (403)
T PRK05093 98 ERVFFANSGAEANEAAFKLARRYACDRHG---PEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDL 174 (403)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHhhcCC---CCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCH
Confidence 89999999999999999999998742211 147789999999999999887777665544445555567788999999
Q ss_pred HHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecc
Q 012368 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315 (465)
Q Consensus 236 ~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK 315 (465)
+++++.+.+ ++++|++||+++++|+++++++|+++|+++|++||+++|+||||+|||++|.+++...+++.||+.+|||
T Consensus 175 ~~l~~~l~~-~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK 253 (403)
T PRK05093 175 AAVKAVIDD-HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAK 253 (403)
T ss_pred HHHHHHhcC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecc
Confidence 999999964 6899999999999999889999999999999999999999999999999998777777899999999999
Q ss_pred cCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
++++|+|+||+++++++++.+....+..|++++|+.|+++.++|+.+.++++.++++++++++++.|+++...++.+..+
T Consensus 254 ~l~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 333 (403)
T PRK05093 254 ALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKYGVFSEI 333 (403)
T ss_pred cccCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCeEeE
Confidence 99999999999999999999977667789999999999999999988777889999999999999999876666666788
Q ss_pred eccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 396 RGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 396 ~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++.|.++++.+.. ...+++..|+++||++.+.+. +.+||+|++.+++++|++++++|++++.++
T Consensus 334 ~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~-~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 334 RGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAGP-DVLRFAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred eeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecCCC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8899999998832 356799999999999998665 789999999999999999999999998754
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=485.65 Aligned_cols=389 Identities=26% Similarity=0.395 Sum_probs=311.4
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHH--HhhcccccCCCC
Q 012368 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQ--ANVLTHVSNMYY 138 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~--~~~~~~~~~~~~ 138 (465)
.++.+.++..++......+.|+++++++|+|+||.|||+||||++++++.++||+||+|++|+.++ ...+.+.+ .+.
T Consensus 21 ~s~~l~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~-~~~ 99 (464)
T TIGR00699 21 KSKAAMKQLNEVFDARAVHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRP-ALG 99 (464)
T ss_pred cHHHHHHHHHhhhcccCcccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcccc-cCC
Confidence 445555555444322222679999999999999999999999999999999999999999999985 33333322 355
Q ss_pred CHHHHHHHHHHHh----hcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCC----------------CCCC--CceEE
Q 012368 139 SIPQIELAKRLVA----CSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPD----------------SKEP--ATEFV 194 (465)
Q Consensus 139 ~~~~~~la~~l~~----~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~----------------~~~~--~~~ii 194 (465)
++...+++++|.+ ..+ .++|+|+|||+||++.|+|+|+.|++..+.. +.++ +.+||
T Consensus 100 ~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii 179 (464)
T TIGR00699 100 NFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSIL 179 (464)
T ss_pred cHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEE
Confidence 6677888888854 443 5899999999999999999999986532100 0011 34899
Q ss_pred EEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-------------------CCHHHHHhhcC--CCCeEEEEEc
Q 012368 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------------------GNIEATRKLIQ--PGKTAAVFVE 253 (465)
Q Consensus 195 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~d~~~le~~l~--~~~~a~vi~e 253 (465)
.+.++|||.+.+++++++...+.....+ ..++.++|+ +++++++++++ .+++++||+|
T Consensus 180 ~~~~syHG~t~~als~t~~~~~~~~~~~-~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~E 258 (464)
T TIGR00699 180 SFKGAFHGRLFGSLSTTRSKPIHKLDIP-AFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVE 258 (464)
T ss_pred EECCCcCCccHHHHHhcCCccccccCCC-CCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 9999999999999988765432221111 112222222 24667888885 3579999999
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCc--ccEEEecccCC-CccceeeEEeCH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKPLA-GGLPIGAALVTE 330 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~--pdi~t~sK~lg-~G~~iG~v~~~~ 330 (465)
|+++++|+++++++||++|+++|++||++||+|||++||||+|.+|+++++++. ||++|+||+++ ||+. ++++
T Consensus 259 Pv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG~~----~~~~ 334 (464)
T TIGR00699 259 PIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYF----FHDP 334 (464)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCCcc----ccch
Confidence 999999999999999999999999999999999999999999999999999997 99999999996 5653 2332
Q ss_pred HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-Cceeee--ccceEEEEEec
Q 012368 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKDVR--GLGLIIGIEFD 407 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~--~~g~~~~i~~~ 407 (465)
.+....+..+++||++||++|+|+.++|+.++++++.++++++++++++.|+++..++| .+..++ +.|+|+.++++
T Consensus 335 -~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~ 413 (464)
T TIGR00699 335 -AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTP 413 (464)
T ss_pred -hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecC
Confidence 32222334688999999999999999999998899999999999999999999888888 788998 99999999984
Q ss_pred C--ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 408 V--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 408 ~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
. ....+.+.|+++|+++.+.+. +++||.||+++|++||++++++|++++
T Consensus 414 ~~~~~~~i~~~~~~~Gvl~~~~g~-~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 414 DEAKRDKLLKKARNNGVNIGGCGV-KAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred CHHHHHHHHHHHHHCCcEEecCCC-CeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 2 256788999999999987654 789999999999999999999998764
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=483.67 Aligned_cols=394 Identities=25% Similarity=0.394 Sum_probs=331.9
Q ss_pred cccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHH
Q 012368 42 SVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIK 121 (465)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~ 121 (465)
|.++ ++++.+.+|||+..+.+.+ ..-.+.|+++++++|+++||.|||+||||.+++++.++||+||+|++
T Consensus 2 s~~~-~~~~~~~~~~g~~~~~~~~---------~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ 71 (423)
T TIGR00713 2 SENL-FEEAKQVFPGGVNSPVRAF---------KSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVE 71 (423)
T ss_pred cHHH-HHHHHhhCCCCCCCccccc---------ccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHH
Confidence 6677 9999999999986544321 01125689999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCc
Q 012368 122 AVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF 200 (465)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~y 200 (465)
|+.+++++..+ ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.+++ +++||.++++|
T Consensus 72 ai~~q~~~~~~--~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~g---------r~~ii~~~~~y 140 (423)
T TIGR00713 72 AVKEALERGTS--YGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTG---------RDKIIKFEGCY 140 (423)
T ss_pred HHHHHHHhCCc--CCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEEcCCC
Confidence 99999987543 23466778999999999886 67999999999999999999999874 78999999999
Q ss_pred ccCccccccccCC--CCcCCCCCCC-----CCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHH
Q 012368 201 HGRTMGALALTSK--EHYRSPFEPV-----MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQF 271 (465)
Q Consensus 201 hg~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~ 271 (465)
||++......++. .....++.+. .+....+|++|+++++++++ .+++++||+||+++++|.++++++|+++
T Consensus 141 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~ 220 (423)
T TIGR00713 141 HGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAG 220 (423)
T ss_pred CCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHH
Confidence 9998766654322 1111122211 12356678899999999996 2578999999999999988888999999
Q ss_pred HHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---CCCcCCCCCh
Q 012368 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGSTFAGS 348 (465)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t~~~~ 348 (465)
|+++|++||++||+||||+|| |+|..++.+++++.||++||||++++|+|+|++++++++++.+.+ ..+.+||++|
T Consensus 221 l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~ 299 (423)
T TIGR00713 221 LRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGN 299 (423)
T ss_pred HHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCC
Confidence 999999999999999999999 888777777889999999999999999999999999999998863 2467899999
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------------hHHH
Q 012368 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS---------------ATPV 413 (465)
Q Consensus 349 ~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~---------------~~~~ 413 (465)
|++|+|+.++|+.+++++++++++++++++++.|.+++.+++.+..+++.|+++.+++..+ ...+
T Consensus 300 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 379 (423)
T TIGR00713 300 PLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKF 379 (423)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHH
Confidence 9999999999999987789999999999999999998888887778899999999877311 1257
Q ss_pred HHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 414 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 414 ~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.|+++||++.+.+. +.+|++|+ +|+++|++++++|+++++++
T Consensus 380 ~~~l~~~Gv~v~~~~~-~~~~l~~~--~t~~~i~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 380 FHEMLDKGVFLPPSQF-EACFLSAA--HTEEDIENTIEAAEEVFAEL 423 (423)
T ss_pred HHHHHHCCeEEecCCc-cceeeECC--CCHHHHHHHHHHHHHHHhhC
Confidence 7889999999876544 56888765 79999999999999998753
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-60 Score=470.64 Aligned_cols=370 Identities=46% Similarity=0.775 Sum_probs=328.6
Q ss_pred cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCC
Q 012368 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD 156 (465)
Q Consensus 77 ~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 156 (465)
+.+.|+++++++|+++||.||++||||++++++.+|||+||+|++|+.+++++..+.+..+.++...++++++.+..+.+
T Consensus 8 ~~~~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 87 (377)
T PRK02936 8 YGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAGD 87 (377)
T ss_pred ccCCCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCCCC
Confidence 34678999999999999999999999999999999999999999999999987544334455677889999999887778
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHH
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE 236 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 236 (465)
.++|++||+||++.|+++++.+++ +++||.++++|||++...+.+++...+...+.+..+++.++|++|++
T Consensus 88 ~~~~~~sG~~a~~~A~~~a~~~~g---------~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 158 (377)
T PRK02936 88 LVFFCNSGAEANEAALKLARKHTG---------KSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIK 158 (377)
T ss_pred EEEEeCCcHHHHHHHHHHHHHhcC---------CCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHH
Confidence 999999999999999999987763 77899999999999998888776655555566666777888999999
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEeccc
Q 012368 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~ 316 (465)
++++.+.+ ++++|++||+++++|..+++++++++|+++|++||+++|+||||+|||++|.+++++.+++.||++|+||+
T Consensus 159 ~l~~~~~~-~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~ 237 (377)
T PRK02936 159 ALKEVMNE-EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKG 237 (377)
T ss_pred HHHHhccC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEccc
Confidence 99999974 68999999999999998899999999999999999999999999999999987777778899999999999
Q ss_pred CCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
+++|+|+|++++++++++.+....+..|+++||++++|+.++|+.+..++++++++++++++++.|++.+.+++.+..++
T Consensus 238 l~~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 317 (377)
T PRK02936 238 LGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIR 317 (377)
T ss_pred ccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEe
Confidence 99999999999999999999776677899999999999999999886678899999999999999998776777777788
Q ss_pred ccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 397 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 397 ~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+.|.++++++......+.+.|.++||++.+.+. +++||+|++.++++++++++++|++++
T Consensus 318 ~~g~~~~i~~~~~~~~~~~~l~~~gv~v~~~g~-~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 318 GKGLMIGIECTEEVAPVIEQLREEGLLVLSAGP-NVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred ecceEEEEEecchHHHHHHHHHHCCeEEecCCC-CEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 899999999855567888999999999998765 789999999999999999999998763
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=480.20 Aligned_cols=376 Identities=28% Similarity=0.464 Sum_probs=307.5
Q ss_pred CCceEEEeeeccEEEeC-CCCEEEecccCcccccCCCCCHHHHH--HHHHHHhhccc--cc-CCCCCHHHHHHHHHHHhh
Q 012368 79 RAPVVLASGKGCKLYDA-EGREYLDLSSGIAVNALGHGDADWIK--AVVDQANVLTH--VS-NMYYSIPQIELAKRLVAC 152 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~-dG~~ylD~~~~~~~~~lGh~~p~v~~--a~~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~ 152 (465)
|.++.+++++|+|+||. |||+||||.+++++.++||+||+|.+ |+.+|+.+..+ .. ..+.++...+++++|++.
T Consensus 25 p~~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~ 104 (443)
T PRK08297 25 DLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARV 104 (443)
T ss_pred CcceEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhh
Confidence 34445899999999996 99999999999999999999999999 99999987542 12 235677788999999988
Q ss_pred c-C--CCeEEecCCHHHHHHHHHHHHHHHhhhc----CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-
Q 012368 153 S-F--ADRVFFSNTGTEANEAAIKFARKFQRHS----NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM- 224 (465)
Q Consensus 153 ~-~--~~~v~~~~sG~eA~~~al~~a~~~t~~~----~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~- 224 (465)
. + .++|+|+|||+||++.|+|+|+.|+..+ +.+ .+++.+||.+.++|||++.+++++++.......+.+..
T Consensus 105 ~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~-~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~ 183 (443)
T PRK08297 105 LGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGID-PALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFD 183 (443)
T ss_pred cCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCC-CCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCC
Confidence 6 3 6799999999999999999999986321 110 01367899999999999999998876432211111110
Q ss_pred ------CCc------------eEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEE
Q 012368 225 ------PGV------------NFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLV 284 (465)
Q Consensus 225 ------~~~------------~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI 284 (465)
+.. ...++++++++++++. ++++++||+||+++++|+++++++|+++|+++|++||++||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI 263 (443)
T PRK08297 184 WPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLI 263 (443)
T ss_pred ccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 111 0011124566777775 46899999999999999999999999999999999999999
Q ss_pred EeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhh----cc-CCCCcCCCCChHHHHHHHHHHH
Q 012368 285 FDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASA----IN-YGDHGSTFAGSPLVCNAAIAVL 359 (465)
Q Consensus 285 ~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~----~~-~~~~~~t~~~~~~~~~aa~a~L 359 (465)
+|||+|||||+|.+|+++++++.||++|+||+++ +|++++.+++.+. +. ...+++||++||++|+|+.++|
T Consensus 264 ~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L 339 (443)
T PRK08297 264 FDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRIL 339 (443)
T ss_pred EechhhccCccchHHHHHhcCCCCCEEEeccccc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999973 4555565554332 21 2358899999999999999999
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-eeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCCCCEEEEe
Q 012368 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-DVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLV 436 (465)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~ 436 (465)
+.+++++++++++++++++++.|+++..++|.+. .+++.|+|+++++.. ....+++.|+++||++.+.+. +.+||+
T Consensus 340 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~~~-~~lr~~ 418 (443)
T PRK08297 340 EVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPTTADRDEVIRRLWEEGVLVLPCGE-RSIRFR 418 (443)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecCHHHHHHHHHHHHHCCEEEecCCC-CeEEEE
Confidence 9998889999999999999999999988888655 899999999999942 245788899999999988765 789999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 437 PPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|++++|++|+++++++|+++++++
T Consensus 419 P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 419 PALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999765
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-60 Score=473.58 Aligned_cols=373 Identities=31% Similarity=0.502 Sum_probs=317.9
Q ss_pred ceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--CCe
Q 012368 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--ADR 157 (465)
Q Consensus 81 p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~~~ 157 (465)
++.+++++|+++||.||++||||++++++.+|||+||+|.+|+.++++++.+... ...++...+++++|++..+ .++
T Consensus 28 ~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~ 107 (427)
T TIGR00508 28 VYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDC 107 (427)
T ss_pred CceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCE
Confidence 4668999999999999999999999999999999999999999999998654322 3456778999999999875 589
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-CcCCCCCCCCCCceEee-----
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVE----- 231 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----- 231 (465)
|+|++||+||++.|+++++.++..++.+ ++.+||.++.+|||.+.+++++++.. .+...+.+..++..++|
T Consensus 108 v~f~~sGseA~e~AlklAr~~~~~~~~~---~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 184 (427)
T TIGR00508 108 VFLADSGSVAVEVALKMALQYWQAKGEK---NRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNR 184 (427)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhhCCC---CccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCcc
Confidence 9999999999999999999987533221 46789999999999999988876532 12222223223222221
Q ss_pred ----C--CCHHHHHhhcC--CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccc
Q 012368 232 ----Y--GNIEATRKLIQ--PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302 (465)
Q Consensus 232 ----~--~d~~~le~~l~--~~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~ 302 (465)
+ +|++++++++. .+++++||+||+ ++++|..+++.+||++|+++|++||++||+|||++||||+|.+|+.+
T Consensus 185 ~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~ 264 (427)
T TIGR00508 185 FDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACE 264 (427)
T ss_pred ccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhh
Confidence 1 25778888885 357999999997 99999999999999999999999999999999999999999998999
Q ss_pred ccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-----CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 012368 303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGH 376 (465)
Q Consensus 303 ~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~ 376 (465)
++++.||++++||+++|| +|++++++++++++.+... .+++||++||+++++++++|++++++++.++++++++
T Consensus 265 ~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~ 344 (427)
T TIGR00508 265 HAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIEN 344 (427)
T ss_pred hcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999 5999999999999988642 3778999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 377 YFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 377 ~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+|++.|+++ ..++.+..+++.|+++.+++. .....+.+.|+++||++.+.+ +.+|++|++++|++||++++++++
T Consensus 345 ~l~~~L~~l-~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~l~~~ppl~~t~~~id~~~~~l~ 421 (427)
T TIGR00508 345 QLKRELSPL-RKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVEQGVWIRPFG--KLIYVMPPYIITTEQLQKLTAALI 421 (427)
T ss_pred HHHHHHHHh-hcCCCEEeEeccccEEEEEECCccCHHHHHHHHHHCCeEEEecC--CEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999986 446667789999999999983 345789999999999998764 689999999999999999999999
Q ss_pred HHHHH
Q 012368 455 KTLPV 459 (465)
Q Consensus 455 ~~l~~ 459 (465)
+++++
T Consensus 422 ~~l~~ 426 (427)
T TIGR00508 422 EALHE 426 (427)
T ss_pred HHHhc
Confidence 99864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=470.38 Aligned_cols=376 Identities=46% Similarity=0.745 Sum_probs=330.7
Q ss_pred ccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHh
Q 012368 72 LLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVA 151 (465)
Q Consensus 72 ~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 151 (465)
+..+.|.+.|+++++++|+++||.||++||||.+++++++|||+||+|.+++.+++++..+....+.++...+|+++|++
T Consensus 17 ~~~~~~~~~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~ 96 (398)
T PRK03244 17 VMMNNYGTPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVE 96 (398)
T ss_pred HhhhhccCCCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHH
Confidence 33444556789999999999999999999999999999999999999999999999886544445667778899999999
Q ss_pred hcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCce
Q 012368 152 CSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN 228 (465)
Q Consensus 152 ~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (465)
.++ .++++|++||+||++.|+++++.. ++++||.++++|||++..++.+++...+...+.+...++.
T Consensus 97 ~~~~~~~~~v~~~~sgsea~~~al~~~~~~----------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (398)
T PRK03244 97 LLGAPEGGRVFFCNSGAEANEAAFKLARLT----------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVE 166 (398)
T ss_pred hCCCCCCCEEEEeCchHHHHHHHHHHHHHH----------CCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCce
Confidence 876 369999999999999999998863 3678999999999999988877765544445555556778
Q ss_pred EeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcc
Q 012368 229 FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308 (465)
Q Consensus 229 ~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~p 308 (465)
.+|++|++++++++. +++++|++||+++++|.++++++|+++|+++|++||++||+||+|+||||+|.+++++++++.|
T Consensus 167 ~~~~~d~~~l~~~~~-~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~p 245 (398)
T PRK03244 167 HVPYGDVDALAAAVD-DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTP 245 (398)
T ss_pred EeCCCCHHHHHHhhc-CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCC
Confidence 889999999999995 4789999999999999999999999999999999999999999999999999877777889999
Q ss_pred cEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012368 309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 309 di~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
|++||||++++|+|+|++++++++++.+....+..||++||++++++.++|+.+.++++.++++++++++++.|+++ .
T Consensus 246 Di~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~--~ 323 (398)
T PRK03244 246 DVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEAL--G 323 (398)
T ss_pred CEEEEchhhhCCcccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--C
Confidence 99999999999999999999999999887667888999999999999999998877889999999999999999875 4
Q ss_pred CCCceeeeccceEEEEEec-CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 389 NPHVKDVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++.+..+++.|++++++++ ..+.++.+.|+++||++.+.+. +++||+|++.++++|+++++++|++++.+++
T Consensus 324 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 324 HPLVDHVRGRGLLLGIVLTAPVAKAVEAAAREAGFLVNAVAP-DVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred CCceeeEeeccEEEEEEEeccHHHHHHHHHHHCCeEEeecCC-CEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 5666778899999999984 2456799999999999988654 8899999999999999999999999998764
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=514.10 Aligned_cols=387 Identities=27% Similarity=0.462 Sum_probs=323.2
Q ss_pred chHHHHHHHHhcccc---ccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCC
Q 012368 61 NNKEVMEAEKKLLVG---TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY 137 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~---~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~ 137 (465)
...++.++..++... .|.+.|+++++++|+|+||.|||+||||.+++. ++||+||+|.+|+.+|+.++.+. ..+
T Consensus 545 ~~~~l~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~~~~--~lGh~hp~v~~Ai~~q~~~l~~~-~~~ 621 (972)
T PRK06149 545 DAAALLARRDASFARVQKHYYADPPQIERGWRHHLFDMAGRSYLDMVNNVT--VLGHGHPRLAAAAARQWSLLNTN-SRF 621 (972)
T ss_pred CHHHHHHHHHHhhccchhhcccCCCeEEEeeeeEEEeCCCCEEEECCCCcc--ccCCCCHHHHHHHHHHHHhcccc-ccc
Confidence 455666666555444 234568899999999999999999999999864 79999999999999999886443 235
Q ss_pred CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012368 138 YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
.++...+|+++|++..+ .++++|+|||+|||+.|+|+|+.+|+ +.+||.++.+|||++.++.++++...
T Consensus 622 ~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~ga~~~s~~~~ 692 (972)
T PRK06149 622 HYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASG---------RRDVVSVLEAYHGWTVATDAVSTSIA 692 (972)
T ss_pred cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcC---------CCeEEEEeCCCCCcChhHhhhcCCcc
Confidence 56778999999999884 68999999999999999999999985 78899999999999988876653211
Q ss_pred cCCCC-CCCCCCce--------EeeCC--C-----HHHHHhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 012368 216 YRSPF-EPVMPGVN--------FVEYG--N-----IEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (465)
Q Consensus 216 ~~~~~-~~~~~~~~--------~~~~~--d-----~~~le~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~ 274 (465)
..... .+...++. ..+++ | .+++++.++ .+++++||+||+++++|+++++++||++|++
T Consensus 693 ~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~ 772 (972)
T PRK06149 693 DNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYA 772 (972)
T ss_pred ccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHH
Confidence 11110 11111111 11232 2 234443332 4579999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCCCCCCc-cccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC-CCCcCCCCChHHHH
Q 012368 275 ACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-GDHGSTFAGSPLVC 352 (465)
Q Consensus 275 l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~~~~~t~~~~~~~~ 352 (465)
+|++||+++|+|||+|||||+|. +|+++++|+.|||+|+||++|||+|+|++++++++++.+.. ..+.+|+++||++|
T Consensus 773 lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~ 852 (972)
T PRK06149 773 AVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSC 852 (972)
T ss_pred HHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHH
Confidence 99999999999999999999997 67899999999999999999999999999999999998864 34567889999999
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCc
Q 012368 353 NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGL 422 (465)
Q Consensus 353 ~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv 422 (465)
+|++++|++++++++.+++++++++++++|+++..++|.+..++|.|+|+++++.. ....+++.|+++||
T Consensus 853 aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gv 932 (972)
T PRK06149 853 RIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGV 932 (972)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCe
Confidence 99999999999899999999999999999999988899999999999999999821 13468889999999
Q ss_pred eEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 423 LVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 423 ~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+.+. ++++||.||+++|++++++++++|++++.+
T Consensus 933 l~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 933 IMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred EEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 9988764 478999999999999999999999999875
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=463.92 Aligned_cols=386 Identities=51% Similarity=0.858 Sum_probs=338.6
Q ss_pred HHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHH
Q 012368 69 EKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKR 148 (465)
Q Consensus 69 ~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 148 (465)
...+..+.|.+.|+++++++|+++||.||++||||.++++++++||+||+|.+++.+++++..+....++++...+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 89 (396)
T PRK02627 10 EKKYLMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEK 89 (396)
T ss_pred HHHhhcccccCCCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHH
Confidence 33445566777899999999999999999999999999999999999999999999999876544445677889999999
Q ss_pred HHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCce
Q 012368 149 LVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN 228 (465)
Q Consensus 149 l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (465)
|++..+.+++++++||+||+++|+++++.+++..+. ++++|+.++++|||++...+..++...+...+.+...++.
T Consensus 90 l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~----~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (396)
T PRK02627 90 LVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGI----EKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFI 165 (396)
T ss_pred HHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCC----CCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCce
Confidence 999888899999999999999999999987752211 1378999999999999988887765554444555556777
Q ss_pred EeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcc
Q 012368 229 FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308 (465)
Q Consensus 229 ~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~p 308 (465)
.++++|++++++++. +++++|++||+++++|+.+++++++++|+++|++||++||+||+|+|||++|.+++++.+++.|
T Consensus 166 ~~~~~d~~~l~~~i~-~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~p 244 (396)
T PRK02627 166 YVPFNDIEALKAAIT-DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEP 244 (396)
T ss_pred EeCCCCHHHHHHhcC-CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCC
Confidence 788999999999996 4789999999999999888899999999999999999999999999999999877777789999
Q ss_pred cEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012368 309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 309 di~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
|+++|||++++|+|+||+++++++++.+....+..|+++|+++++++.++|+.++++++.++++++++++++.|.++...
T Consensus 245 di~t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (396)
T PRK02627 245 DIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEK 324 (396)
T ss_pred CEEEEcchhhCCcccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987666888999999999999999998877788999999999999999998777
Q ss_pred CCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 389 NPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++.+..+++.|++++++++.+..++++.|+++||++.+++. +++||+|++.++++++++++++|+++++++
T Consensus 325 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~-~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 325 YPGIKEVRGLGLMIGIELDRPAAEIVKKALEKGLLINVTGD-NVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred CCCeeeeccCcEEEEEEecCcHHHHHHHHHHCCeEEeecCC-CEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence 77667788899999998855678899999999999998765 789999999999999999999999998764
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-59 Score=469.99 Aligned_cols=395 Identities=26% Similarity=0.412 Sum_probs=334.8
Q ss_pred ccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHH
Q 012368 41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120 (465)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~ 120 (465)
.|++| ++++++.+|||.+.+... ..++.+.|+++++++|+++||.||++||||.+++++.++||+||+|+
T Consensus 3 ~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~ 72 (426)
T PRK00062 3 KSEEL-FERAKKLIPGGVNSPVRA---------FKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVV 72 (426)
T ss_pred hhHHH-HHHHHHhCCCCcCCcccc---------cCCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHH
Confidence 56778 999999999997655432 23455678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 012368 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199 (465)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~ 199 (465)
+|+.+++++... ..+.++...+|+++|++..+ .++|+|++||+||++.|+++++.+++ +++||.++++
T Consensus 73 ~a~~~~~~~~~~--~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g---------~~~ii~~~~~ 141 (426)
T PRK00062 73 EAVIEAAEKGLS--FGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTG---------RDKIIKFEGC 141 (426)
T ss_pred HHHHHHHHhCCc--CCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhC---------CCeEEEEcCc
Confidence 999999987432 34567778899999998874 78999999999999999999998874 7899999999
Q ss_pred cccCccccccccCCCC--cCCCCCC-----CCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 200 FHGRTMGALALTSKEH--YRSPFEP-----VMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 200 yhg~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
|||++.++...++... ...++.+ ..++...+|++|++++++.+. .+++++||+||+++++|.++++++|++
T Consensus 142 yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~ 221 (426)
T PRK00062 142 YHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLE 221 (426)
T ss_pred cCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHH
Confidence 9999976665533211 1111111 112345678899999999885 357999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---CCCcCCCCC
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGSTFAG 347 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t~~~ 347 (465)
+|+++|++||+++|+||||+|| |+|.+++.+++++.||++++||++++|+|+|++++++++++.+.. ..+.+|+++
T Consensus 222 ~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~ 300 (426)
T PRK00062 222 GLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSG 300 (426)
T ss_pred HHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcC
Confidence 9999999999999999999999 888777788889999999999999999999999999999998853 246678999
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------------hHH
Q 012368 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS---------------ATP 412 (465)
Q Consensus 348 ~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~---------------~~~ 412 (465)
||++++|+.++|+.+++++++++++++++++++.|+++..+++.+..+++.|+|+.+++..+ ...
T Consensus 301 ~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 380 (426)
T PRK00062 301 NPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFAR 380 (426)
T ss_pred CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHH
Confidence 99999999999999988889999999999999999998888888888999999999988311 246
Q ss_pred HHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 413 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+...|+++||++.+.+. +.+++ ++++|++|+++++++|+++++++
T Consensus 381 i~~~l~~~Gv~v~~~~~-~~~~~--~~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 381 FFHAMLDEGVYLAPSQF-EAGFV--SAAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred HHHHHHHCCeEeecCCc-Cceee--eccCCHHHHHHHHHHHHHHHHhh
Confidence 88899999999988654 45665 57999999999999999998764
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=461.97 Aligned_cols=390 Identities=36% Similarity=0.606 Sum_probs=333.1
Q ss_pred HHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHH
Q 012368 64 EVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQI 143 (465)
Q Consensus 64 ~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 143 (465)
.++++..++....+.+.|+++++++|+++||.||++||||.+++++.++||+||+|.+|+.+++++..+.+..+.++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 82 (401)
T TIGR01885 3 EAIERENKYGAHNYHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFG 82 (401)
T ss_pred hHHHHHHHhhhcccCCCCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHH
Confidence 34445555555566677889999999999999999999999999999999999999999999998866544444677789
Q ss_pred HHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC
Q 012368 144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV 223 (465)
Q Consensus 144 ~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 223 (465)
+++++|++.++.++++|++||+|||+.|+++++.++..... ..+++++|+.++.+|||++...+++++.+.+...+.+.
T Consensus 83 ~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~-~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 161 (401)
T TIGR01885 83 EFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKG-IPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPY 161 (401)
T ss_pred HHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcC-CCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCC
Confidence 99999999998889999999999999999999987532100 00146789999999999999988887655444444455
Q ss_pred CCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc
Q 012368 224 MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301 (465)
Q Consensus 224 ~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~ 301 (465)
.+++..+|++|+++|+++++ +.++++|++||+++++|.+.++++|+++|+++|++||+++|+||||+|||++|.+++.
T Consensus 162 ~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~ 241 (401)
T TIGR01885 162 VPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCV 241 (401)
T ss_pred CCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHH
Confidence 56678889999999999986 3578999999999999999989999999999999999999999999999999988777
Q ss_pred cccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 012368 302 EHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKE 380 (465)
Q Consensus 302 ~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~ 380 (465)
+.+++.||++++||++++| +|+|++++++++++.+....+..|++++|++++++.++|+.++++++.++++++++++++
T Consensus 242 ~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~ 321 (401)
T TIGR01885 242 DHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRD 321 (401)
T ss_pred hhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7788999999999999976 899999999999998876567789999999999999999998777888899999999999
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEecC-----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGLGLIIGIEFDV-----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~~~-----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
.|+++ ..+.+..+++.|+++.+.++. ...++++.|.++||++.+.+. +.+||+|++.+|+++|++++++|++
T Consensus 322 ~L~~l--~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~-~~lRi~p~l~~t~~~i~~~l~~l~~ 398 (401)
T TIGR01885 322 QLKKL--PKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHG-NIIRLAPPLVITEEQLDEGLEIIKK 398 (401)
T ss_pred HHHhc--cCCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecCC-CEEEEeCCccCCHHHHHHHHHHHHH
Confidence 99876 345666788999999988842 356789999999999988764 7899999999999999999999998
Q ss_pred HH
Q 012368 456 TL 457 (465)
Q Consensus 456 ~l 457 (465)
++
T Consensus 399 ~l 400 (401)
T TIGR01885 399 VI 400 (401)
T ss_pred Hh
Confidence 76
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=459.58 Aligned_cols=321 Identities=45% Similarity=0.755 Sum_probs=284.6
Q ss_pred EEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHhhcC--CCeEE
Q 012368 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--ADRVF 159 (465)
Q Consensus 83 ~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~--~~~v~ 159 (465)
+++|++|+|+||.||++||||++++++.+|||+||+|.+|+.+++.+..+.. ..+.++...+|+++|.+..+ .++++
T Consensus 1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~ 80 (339)
T PF00202_consen 1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVF 80 (339)
T ss_dssp EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEE
T ss_pred CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceee
Confidence 5789999999999999999999999999999999999999999999876654 45667789999999999994 88999
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHH--
Q 012368 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA-- 237 (465)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-- 237 (465)
|++||+||++.|+|+++.+...... +++.+|+.++++|||.+.+++++++.+.++..+.+...++..+|++++..
T Consensus 81 f~~sGseAve~Alkla~~~~~~~~~---~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (339)
T PF00202_consen 81 FANSGSEAVEAALKLARQYHNKRAY---TGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADE 157 (339)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTHH---HTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHH
T ss_pred eccCchHHHHHHHHHhhcccccccc---cCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhh
Confidence 9999999999999999932211111 14889999999999999999998887777777777778888999998766
Q ss_pred --------HHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC
Q 012368 238 --------TRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI 306 (465)
Q Consensus 238 --------le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~ 306 (465)
+++.+. .+++++||+||+++++|.++++++|+++|+++|++||++||+|||++||||+|++|+++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv 237 (339)
T PF00202_consen 158 EEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGV 237 (339)
T ss_dssp HHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTS
T ss_pred hHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccc
Confidence 333332 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 012368 307 FPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 307 ~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
.||++|+||+++||+|+|++++++++++.+.+..+++||++||++|+++.++|+.++++++++++++.++++++.|+++.
T Consensus 238 ~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~ 317 (339)
T PF00202_consen 238 DPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLRELA 317 (339)
T ss_dssp SSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccccchhhhhhcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988789999999999999999999999999999999999999999999998
Q ss_pred HcCCCceeeeccceEEEEEe
Q 012368 387 ARNPHVKDVRGLGLIIGIEF 406 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~ 406 (465)
++++.+..+++.|+|+++++
T Consensus 318 ~~~~~i~~vrg~Gl~~~ie~ 337 (339)
T PF00202_consen 318 ARYPLIGEVRGIGLMIGIEL 337 (339)
T ss_dssp HHTTTEEEEEEETTEEEEEE
T ss_pred HhCCCeEEEeeeCeEEEEEE
Confidence 88899999999999999987
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-58 Score=461.07 Aligned_cols=373 Identities=36% Similarity=0.609 Sum_probs=322.3
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC---
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--- 154 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--- 154 (465)
+.|+++++++|+++||+||++||||.+++++.++||+||+|.+++.+++++..+... .+.++...+|+++|++..+
T Consensus 22 ~~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 101 (425)
T PRK08088 22 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDF 101 (425)
T ss_pred CCCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999999999999999999999999999998654322 2335678899999999775
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-CcCCCCCCCCCCceEeeC-
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVEY- 232 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 232 (465)
.++++|++||+||++.|+++++.+++ +.+||.++++|||.+.+++++++.. .+...+.+...++...++
T Consensus 102 ~~~~~f~~sGsea~e~Alklar~~~~---------r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 172 (425)
T PRK08088 102 AKKTLLVTTGSEAVENAVKIARAATK---------RSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYP 172 (425)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHhC---------CCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCC
Confidence 36999999999999999999999874 6789999999999999998877542 233334333444433322
Q ss_pred ---CC------HHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 233 ---GN------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 233 ---~d------~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
++ +++|+++++ ++++++||+||+++++|.++++++++++|+++|++||+++|+||+|+|+|++|.++
T Consensus 173 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~ 252 (425)
T PRK08088 173 CPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLF 252 (425)
T ss_pred ccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh
Confidence 21 567888885 46799999999999999999999999999999999999999999999999999877
Q ss_pred cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012368 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
+++.+++.||+.+|||++++|+|+||+++++++++.+....+..|++++|++++++.++|+.+..+++.+++++.+++++
T Consensus 253 ~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (425)
T PRK08088 253 AMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLK 332 (425)
T ss_pred HHhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999999998777889999999999999999999877899999999999999
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEec--C--------ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRGLGLIIGIEFD--V--------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~--------~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~ 448 (465)
+.|.++...+|.+..+++.|+++|+++. . ...++...|+++||++.+.+. ++.+||+|++.+++++|++
T Consensus 333 ~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~ 412 (425)
T PRK08088 333 DGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQ 412 (425)
T ss_pred HHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHH
Confidence 9999998888887889999999999982 1 146788899999998877543 5889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 012368 449 AVEILCKTLPVL 460 (465)
Q Consensus 449 ~l~~l~~~l~~~ 460 (465)
++++|.+++.++
T Consensus 413 ~i~~l~~~l~~~ 424 (425)
T PRK08088 413 GLEIIAQCFDEA 424 (425)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-59 Score=468.36 Aligned_cols=371 Identities=27% Similarity=0.417 Sum_probs=301.1
Q ss_pred CCceEEEeeeccEEEeC-CCCEEEecccCcccccCCCCCHHHH--HHHHHHHhhccc---ccCCCCCHHHHHHHHHHHhh
Q 012368 79 RAPVVLASGKGCKLYDA-EGREYLDLSSGIAVNALGHGDADWI--KAVVDQANVLTH---VSNMYYSIPQIELAKRLVAC 152 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~-dG~~ylD~~~~~~~~~lGh~~p~v~--~a~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~ 152 (465)
|.++.+++++|+|+||. |||+||||.+++++.++||+||+|. +|+.+++++..+ ....+.++...+++++|++.
T Consensus 18 p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 97 (431)
T TIGR03251 18 DLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARV 97 (431)
T ss_pred ceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHh
Confidence 34444699999999996 9999999999999999999999999 999999987532 11234566788899999887
Q ss_pred c-C--CCeEEecCCHHHHHHHHHHHHHHHhhhc----CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC
Q 012368 153 S-F--ADRVFFSNTGTEANEAAIKFARKFQRHS----NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP 225 (465)
Q Consensus 153 ~-~--~~~v~~~~sG~eA~~~al~~a~~~t~~~----~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
. + .++++|+|||+||++.|+|+|+.||+.. +.+ .+++.+||.++++|||.+.+++++++...+...+.+...
T Consensus 98 ~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~-~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~ 176 (431)
T TIGR03251 98 LGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIP-AALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFD 176 (431)
T ss_pred cCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCC-CCCCceEEEECCccCCcchhhhhccCCccccccCCCCCC
Confidence 5 2 6899999999999999999999997421 110 002578999999999999999988765333322222110
Q ss_pred C----c--eEee-------------CCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEE
Q 012368 226 G----V--NFVE-------------YGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLV 284 (465)
Q Consensus 226 ~----~--~~~~-------------~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI 284 (465)
. . ...| +++++++++.+. ++++++||+||+++++|+++++++|+++|+++|++||++||
T Consensus 177 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI 256 (431)
T TIGR03251 177 WPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLI 256 (431)
T ss_pred CccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 0 0 0011 124566666774 46899999999999999999999999999999999999999
Q ss_pred EeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHH---Hhh-cc-CCCCcCCCCChHHHHHHHHHHH
Q 012368 285 FDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV---ASA-IN-YGDHGSTFAGSPLVCNAAIAVL 359 (465)
Q Consensus 285 ~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i---~~~-~~-~~~~~~t~~~~~~~~~aa~a~L 359 (465)
+||||+||||+|.+|+++++++.||++++||++ ++++++..+++ ++. +. +..+.+||++||++++|+.++|
T Consensus 257 ~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L 332 (431)
T TIGR03251 257 FDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRIL 332 (431)
T ss_pred EecchhccCccchHHHHHhcCCCCCEEEecccC----ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999997 44555555543 321 21 2347889999999999999999
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-CceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCCCCEEEEe
Q 012368 360 DKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLV 436 (465)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~ 436 (465)
+.++++++.++++++++++++.|+++..+++ .+..+++.|+++.+++.. ....+.+.|+++||++.+.+. +.+||+
T Consensus 333 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~g~-~~lr~~ 411 (431)
T TIGR03251 333 EIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTADRDEVIRQLYREGVLLLGCGE-RSIRFR 411 (431)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHHHHHHHHHHHHhCCeEEecCCC-CeEEEE
Confidence 9998888999999999999999999887888 788899999999999842 234688999999999988764 789999
Q ss_pred cCCCCcHHHHHHHHHHHHH
Q 012368 437 PPLIISEQELDQAVEILCK 455 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~ 455 (465)
|++.+|++||++++++|++
T Consensus 412 P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 412 PPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred CCccCCHHHHHHHHHHHHh
Confidence 9999999999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=484.39 Aligned_cols=394 Identities=26% Similarity=0.360 Sum_probs=318.2
Q ss_pred hHHHHHHHHhccccccCC-------CceEEEeeecc----EEEeCCCC----EEEecccCcccccCC-CCCHHHHHHHHH
Q 012368 62 NKEVMEAEKKLLVGTYNR-------APVVLASGKGC----KLYDAEGR----EYLDLSSGIAVNALG-HGDADWIKAVVD 125 (465)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~----~~~d~dG~----~ylD~~~~~~~~~lG-h~~p~v~~a~~~ 125 (465)
.++..++..++.|++|.. .|.+|++++|. |++|.||+ +|||++++++++++| |+||+|.+|+.+
T Consensus 314 ~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~ 393 (817)
T PLN02974 314 LQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAY 393 (817)
T ss_pred HHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHH
Confidence 334455556777776653 36788999998 99999998 999999999999999 589999999999
Q ss_pred HHhhcccccC-CCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHH-HhhhcCCCCC---------CCCc
Q 012368 126 QANVLTHVSN-MYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARK-FQRHSNPDSK---------EPAT 191 (465)
Q Consensus 126 ~~~~~~~~~~-~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~-~t~~~~~~~~---------~~~~ 191 (465)
|+.++.+... .+.+++..+|+++|.+..+ .++|+|++||+||++.|||+|+. |+...+.... .++.
T Consensus 394 Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~ 473 (817)
T PLN02974 394 AAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIEL 473 (817)
T ss_pred HHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCC
Confidence 9999877644 3567889999999999664 47999999999999999999964 6543332100 1377
Q ss_pred eEEEEcCCcccCccccccccCCCCcCCCC-CC-CC--------CC------ce--EeeCC--C-----------------
Q 012368 192 EFVSFTNSFHGRTMGALALTSKEHYRSPF-EP-VM--------PG------VN--FVEYG--N----------------- 234 (465)
Q Consensus 192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-~~-~~--------~~------~~--~~~~~--d----------------- 234 (465)
+||.+.++|||.+.+++++++...+...+ .+ .. +. .. .+|++ +
T Consensus 474 kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~ 553 (817)
T PLN02974 474 KVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFD 553 (817)
T ss_pred EEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccccccccccccccccc
Confidence 89999999999999999988654333221 11 00 00 00 01111 0
Q ss_pred ------------HHHHHhhcC-------CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC
Q 012368 235 ------------IEATRKLIQ-------PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294 (465)
Q Consensus 235 ------------~~~le~~l~-------~~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr 294 (465)
.+.+++.|+ .+++++||+||+ ++.||+++++++|+++|+++|++||++||+|||+|||||
T Consensus 554 ~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGR 633 (817)
T PLN02974 554 KTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWR 633 (817)
T ss_pred ccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCc
Confidence 245666663 357999999995 899999999999999999999999999999999999999
Q ss_pred CCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC------CCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 295 ~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
+|.+|+++++++.|||+|++|+++|| +|+|++++++++++.+.. ..|++||++||++|+|++++|++++++++
T Consensus 634 tG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~ 713 (817)
T PLN02974 634 LGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPST 713 (817)
T ss_pred ccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccH
Confidence 99999999999999999999999999 699999999999998852 24889999999999999999999988755
Q ss_pred HHHH----HHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC----------hHHHHHHHH-HCCceEeecCCCCE
Q 012368 368 LASV----SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------ATPVVDACR-DSGLLVLTAGKGNV 432 (465)
Q Consensus 368 ~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~----------~~~~~~~l~-~~Gv~v~~~~~~~~ 432 (465)
.+++ .++++++.+.|.+.+..+|.+..+++.|+|+++++..+ +..+.+.|+ ++||++++.+ ++
T Consensus 714 ~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G--nv 791 (817)
T PLN02974 714 NPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG--NV 791 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC--CE
Confidence 5554 44556666666555567899999999999999999311 245778888 9999999865 78
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 433 VRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 433 lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+++.||+.++++++++++++|.+.|
T Consensus 792 i~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 792 VYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998865
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=457.66 Aligned_cols=388 Identities=37% Similarity=0.629 Sum_probs=332.2
Q ss_pred ccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc
Q 012368 74 VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS 153 (465)
Q Consensus 74 ~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 153 (465)
.+.+.+.|+++++++|+|+||.||++||||++++++.++||+||+|++|+.++++.+.+.+..+.++...++++.+++..
T Consensus 7 ~~~~~~~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (400)
T PTZ00125 7 AHNYHPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF 86 (400)
T ss_pred ccccCCCCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC
Confidence 34456778999999999999999999999999999999999999999999999987665544444666788888888887
Q ss_pred CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC
Q 012368 154 FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG 233 (465)
Q Consensus 154 ~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (465)
+.++++|++||++|++.|+++++.++....+. ..++++||.++.+|||.+...+..++...+...+.+..+++..++++
T Consensus 87 ~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~-~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (400)
T PTZ00125 87 GYDKVLPMNSGAEAGETALKFARKWGYEVKGI-PENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYN 165 (400)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCC-CCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCC
Confidence 78899999999999999999998653111000 01367899999999999999888776543333344555567788899
Q ss_pred CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe
Q 012368 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313 (465)
Q Consensus 234 d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~ 313 (465)
|+++|+++++.+++++|++||+++++|.+.++++|+++|+++|++||++||+||||+|||++|.++..+.+++.||++++
T Consensus 166 d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~ 245 (400)
T PTZ00125 166 DVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLL 245 (400)
T ss_pred CHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEE
Confidence 99999999974579999999999999999989999999999999999999999999999999987777778899999999
Q ss_pred cccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 314 AKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 314 sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
||++++| +|+|++++++++++.+....+..|++++|++++++.++|+.+.++++.++++++++++++.|++++..++.+
T Consensus 246 sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 325 (400)
T PTZ00125 246 GKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWV 325 (400)
T ss_pred cccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 9999987 599999999999998876667788999999999999999988777888999999999999999887667776
Q ss_pred eeeeccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 393 KDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 393 ~~~~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
..+++.|.++++.++. ...++++.|+++||++.|.+. +++||+|++.++++++++++++|.++++++..|
T Consensus 326 ~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~~~ 399 (400)
T PTZ00125 326 KEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHD-NIIRFAPPLVITKEQLDQALEIIKKVLKSFDSN 399 (400)
T ss_pred EEEecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeecCC-CEEEEECCccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 6788899999998842 356789999999999988754 799999999999999999999999999988654
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=456.35 Aligned_cols=391 Identities=34% Similarity=0.586 Sum_probs=332.6
Q ss_pred HHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHH
Q 012368 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 142 (465)
+++++....+....+.+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+.+++++..+.+..+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~ 85 (401)
T PRK00854 6 EDLIATEQRLGAHNYKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQL 85 (401)
T ss_pred HHHHHHHhhhhhcccCCCCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHH
Confidence 44554444444455667789999999999999999999999999999999999999999999999987665444566778
Q ss_pred HHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCC
Q 012368 143 IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP 222 (465)
Q Consensus 143 ~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 222 (465)
.+++++|++..+.+++++++||+||++.|+++++.++....+. .+++++||+++.+|||++..++.++..+..+..+.+
T Consensus 86 ~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~-~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~ 164 (401)
T PRK00854 86 APLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGV-PEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGP 164 (401)
T ss_pred HHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCC-CCCCceEEEECCCcCCccHHHHhccCCccccccCCC
Confidence 9999999999888899999999999999999999874211000 013578999999999999888777766554444556
Q ss_pred CCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccc
Q 012368 223 VMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302 (465)
Q Consensus 223 ~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~ 302 (465)
..+++.++|++|++++++++.+ ++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|||++|.+++.+
T Consensus 165 ~~~~~~~~~~~d~~~le~~i~~-~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~ 243 (401)
T PRK00854 165 FTPGFRVVPFGDAEALEAAITP-NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEE 243 (401)
T ss_pred CCCCeEEeCCCCHHHHHHHhCC-CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHh
Confidence 6678888999999999999974 689999999999999999889999999999999999999999999999999876667
Q ss_pred ccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012368 303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 303 ~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
++++.||++++||++++| +|+|++++++++++.+....+..||+++|++++++.++|+.++++++.++++++++++++.
T Consensus 244 ~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~ 323 (401)
T PRK00854 244 HEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEG 323 (401)
T ss_pred hcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 788999999999999988 7999999999999988766678899999999999999999887777889999999999999
Q ss_pred HHHHHHcCCCceeeeccceEEEEEe-c--CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 382 LKQKLARNPHVKDVRGLGLIIGIEF-D--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~~g~~~~i~~-~--~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
|+++ ..+.+..+++.|.++.+.+ + ....++++.|+++||++.+.+. +++||+|++.+++++|++++++|++++.
T Consensus 324 L~~~--~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~~~-~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 324 LRSI--RSNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDTHD-HTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred HHhh--ccCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecCCC-CEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 9876 2233456788899998877 2 2356799999999999987654 7899999999999999999999998764
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=443.90 Aligned_cols=367 Identities=43% Similarity=0.742 Sum_probs=317.4
Q ss_pred cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCC
Q 012368 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD 156 (465)
Q Consensus 77 ~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 156 (465)
|.+.|+++++++|+|+||.||++||||.+++++.+||| ||+|++|+.+++++.......+.++...++++++... ...
T Consensus 8 ~~~~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~-~~~ 85 (375)
T PRK04260 8 YKRAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD-KDY 85 (375)
T ss_pred cCCCCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC-cCC
Confidence 44568899999999999999999999999999999999 9999999999998754433334455567777766542 133
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHH
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE 236 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 236 (465)
.++|++||+||++.|+++++.+++ +++||+++++|||++...++.++.......+.+....+...+++|++
T Consensus 86 ~~~~~~SGseA~~~Al~~ar~~~~---------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~ 156 (375)
T PRK04260 86 LAFFCNSGAEANEAAIKIARKATG---------KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLN 156 (375)
T ss_pred EEEEcCccHHHHHHHHHHHHHhcC---------CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHH
Confidence 679999999999999999998763 77899999999999988887766544443444433445555678999
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEeccc
Q 012368 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~ 316 (465)
++++++.+ ++++|++||+++++|+++++.+|+++|.++|+++|+++|+||+|+|||++|.++.++.+++.||++||||+
T Consensus 157 ~l~~~l~~-~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~ 235 (375)
T PRK04260 157 SVKALVNK-NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKG 235 (375)
T ss_pred HHHHhcCC-CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEeccc
Confidence 99999864 68999999999999999999999999999999999999999999999999887777778999999999999
Q ss_pred CCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
+++|+|+|++++++++++.+....+.+||++||++++++.++|+.++.+++.+++++.++++++.+.+++..++.+..++
T Consensus 236 l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 315 (375)
T PRK04260 236 LANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVR 315 (375)
T ss_pred ccCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe
Confidence 99999999999999999988766688899999999999999999987788999999999999999999888887667888
Q ss_pred ccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 397 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 397 ~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+.|+++++++.....++.+.|+++||++.+.+. +.+|+.|++.++++|+++++++|+++
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 316 GLGYMIGIETTADLSQLVEAARDKGLIVLTAGT-NVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred ccceEEEEEecCcHHHHHHHHHhCCCEEecCCC-CEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 899999999865678899999999999988765 78999999999999999999999875
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=443.84 Aligned_cols=384 Identities=21% Similarity=0.299 Sum_probs=308.3
Q ss_pred cccccchhhhccCCCCCCcchHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHH
Q 012368 42 SVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120 (465)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~ 120 (465)
|.+| +++|.+++|+|+++..+... .|. +.|+++++++|+|+||.|||+||||.+++++.++||+||+|.
T Consensus 1 s~~l-~~~a~~~~p~g~~~~~~~~~---------~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~ 70 (431)
T PRK06209 1 SQLL-QSRLHALIPGGAHTYAKGDD---------QYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVV 70 (431)
T ss_pred CHHH-HHHHHhhCCCCCCCCccccc---------cCCCCCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHH
Confidence 4567 89999999999987776321 122 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE-cC
Q 012368 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF-TN 198 (465)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~-~~ 198 (465)
+|+.+|+++... ...++....+++++|++..+ .++|+|++||+||++.|+|+|+.||+ +.+|+.+ ..
T Consensus 71 ~Ai~~q~~~~~~--~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tg---------r~~i~~~~~~ 139 (431)
T PRK06209 71 EAVREALQDGCN--FTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTG---------RDLVARCADH 139 (431)
T ss_pred HHHHHHHHhCcC--CCCCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhC---------CCeEEEeccC
Confidence 999999998643 22344556689999999886 68999999999999999999999985 7788888 67
Q ss_pred CcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+|||+.......+.... .. ..........++++|+++|+++++ .+++++||+||++++ .++++||++|+++|
T Consensus 140 ~~h~~~~~~~g~~~~~~-~~-~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc 213 (431)
T PRK06209 140 PFFSTDDWFIGTTPMSA-GI-PASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLC 213 (431)
T ss_pred ccccccccccccCCCCC-CC-ChhHhccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHH
Confidence 77764322111100000 00 000112234578899999999986 347999999999876 67899999999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhh--cc----C--CCCcCCCCCh
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASA--IN----Y--GDHGSTFAGS 348 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~--~~----~--~~~~~t~~~~ 348 (465)
++||++||+|||++||++.+ .+...++++.||++|+||++|+|+|+|++++++++++. +. . ..+++|+++|
T Consensus 214 ~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~n 292 (431)
T PRK06209 214 HENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAE 292 (431)
T ss_pred HHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCC
Confidence 99999999999999997643 23455689999999999999999999999999999986 31 1 1367899999
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec------CC----hHHHHHHHH
Q 012368 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD------VS----ATPVVDACR 418 (465)
Q Consensus 349 ~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~------~~----~~~~~~~l~ 418 (465)
|++++|++++|+++++++++++++++++++++.|+++..+++....+++.|.++.+.+- .. ...+.+.|+
T Consensus 293 p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 372 (431)
T PRK06209 293 THALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETI 372 (431)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999988888887778888887776651 11 125678889
Q ss_pred HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 419 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 419 ~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++|+++.+ + +++..||++||++++++|+++++.++
T Consensus 373 ~~Gi~~p~------l--~is~~ht~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 373 RRGVLMPS------L--VVSYAHGDADIERTIDAVHGALGVYR 407 (431)
T ss_pred HCCccccc------c--cccccCCHHHHHHHHHHHHHHHHHHH
Confidence 99998732 2 44678999999999999999998874
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-55 Score=441.33 Aligned_cols=369 Identities=45% Similarity=0.795 Sum_probs=321.9
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHHhhcC--C
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~--~ 155 (465)
+.|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++.+....... +.++...+++++|++.++ .
T Consensus 17 ~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (413)
T cd00610 17 PYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGL 96 (413)
T ss_pred CCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCC
Confidence 5789999999999999999999999999999999999999999999999765433222 246678999999999998 8
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC--
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-- 233 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (465)
++++|++||+||++.|+++++.++ ++++|++++++|||++...+..++...+...+.+...++..+|++
T Consensus 97 ~~v~~~~sgsea~~~al~~~~~~~---------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (413)
T cd00610 97 DKVFFVNSGTEAVEAALKLARAYT---------GRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYR 167 (413)
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHc---------CCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCcc
Confidence 999999999999999999998776 488999999999999998888776544443444445567778888
Q ss_pred ---------CHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccc
Q 012368 234 ---------NIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302 (465)
Q Consensus 234 ---------d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~ 302 (465)
|+++|+++++. +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|||+.|..+..+
T Consensus 168 ~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~ 247 (413)
T cd00610 168 YRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFE 247 (413)
T ss_pred ccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHh
Confidence 89999999874 5789999999999999988899999999999999999999999999999998877778
Q ss_pred ccCCcccEEEecccCCCccceeeEEeCHHHHhhc--cCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 012368 303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI--NYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKE 380 (465)
Q Consensus 303 ~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~--~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~ 380 (465)
.+++.||++|+||++++|+|+|++++++++++.+ ....+.+|+++++++++++.++|+.++++++.++++++++++++
T Consensus 248 ~~~~~~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~ 327 (413)
T cd00610 248 HFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRE 327 (413)
T ss_pred hcCCCCCeEEEcccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999986 44567789999999999999999998778899999999999999
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l 450 (465)
.|+++...++.+..+++.|.++++.+.. ....+.+.|+++||++.+++ ++.+|+++++.+|++++++++
T Consensus 328 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~-~~~lR~~~~~~~t~~~i~~~~ 406 (413)
T cd00610 328 RLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG-GNVIRLLPPLIITEEEIDEGL 406 (413)
T ss_pred HHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC-CCEEEEECCCcCCHHHHHHHH
Confidence 9998866556666678889999998832 24678899999999999875 378999999999999999999
Q ss_pred HHHHHHH
Q 012368 451 EILCKTL 457 (465)
Q Consensus 451 ~~l~~~l 457 (465)
++|++++
T Consensus 407 ~~l~~~l 413 (413)
T cd00610 407 DALDEAL 413 (413)
T ss_pred HHHHHhC
Confidence 9998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-55 Score=388.87 Aligned_cols=385 Identities=26% Similarity=0.495 Sum_probs=318.5
Q ss_pred HHHHHHHhccccc----cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC
Q 012368 64 EVMEAEKKLLVGT----YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139 (465)
Q Consensus 64 ~~~~~~~~~~~~~----~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~ 139 (465)
+.+..++++..+. |+.-|+.++|++|.|++|.+|++|||+.+|.. .-||+||+|++|...++..... ...+.+
T Consensus 9 etlklRk~hIG~~Cq~Fy~sDP~kivRaq~QYmfDE~g~~yLDCInNVa--Hvghchp~VV~A~~kQmat~~t-N~RFlh 85 (452)
T KOG1403|consen 9 ETLKLRKQHIGQACQLFYRSDPLKIVRAQGQYMFDEEGTRYLDCINNVA--HVGHCHPEVVRAGAKQMATIST-NNRFLH 85 (452)
T ss_pred HHHhHHHhccCcceeEEecCCchhhehhccceeeccCcccHHHHhhhhh--hcccCCHHHHHHHHHHHhHhcc-cchhhH
Confidence 3444444444442 55679999999999999999999999999854 6799999999999999987533 345556
Q ss_pred HHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCC
Q 012368 140 IPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (465)
Q Consensus 140 ~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (465)
+...+.++.|...++ .+-++|+|||+|||++|+|+||.||+ ...+|+.+..|||+....+.++.-.....
T Consensus 86 d~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftk---------hqDvItldHAYHGHl~s~mE~SPYKF~~g 156 (452)
T KOG1403|consen 86 DELVQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTK---------HQDVITLDHAYHGHLQSVMEVSPYKFNQG 156 (452)
T ss_pred HHHHHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcc---------cCceEEEechhccceeeeeeccceeccCC
Confidence 667788888877776 88999999999999999999999985 67799999999999998888774322111
Q ss_pred CCCCCCCC-ceEeeCC---------------C-----HHHHHhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 012368 219 PFEPVMPG-VNFVEYG---------------N-----IEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFL 272 (465)
Q Consensus 219 ~~~~~~~~-~~~~~~~---------------d-----~~~le~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l 272 (465)
.-.. .|+ +...|.+ | .+.++++++ ...++++|.|..++.||.++||++|++.+
T Consensus 157 ~~v~-kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~V 235 (452)
T KOG1403|consen 157 GGVA-KPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAV 235 (452)
T ss_pred CCcC-CCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHH
Confidence 0000 011 1111211 1 234555553 45789999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeccccCCCCCCc-cccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC--CCCcCCCCChH
Q 012368 273 RDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY--GDHGSTFAGSP 349 (465)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~--~~~~~t~~~~~ 349 (465)
.+..+.+|.+.|.||||.||||.|. .|+++.++..|||+|++|.+|+|.|+++|+..+++.+.+.. ..+..||++||
T Consensus 236 a~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnP 315 (452)
T KOG1403|consen 236 ADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNP 315 (452)
T ss_pred HHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCc
Confidence 9999999999999999999999997 78999999999999999999999999999999999999864 35778999999
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe--c----C----ChHHHHHHHHH
Q 012368 350 LVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--D----V----SATPVVDACRD 419 (465)
Q Consensus 350 ~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~--~----~----~~~~~~~~l~~ 419 (465)
.+|+++++++++++++++.++..+.+++|...|.++..+++++.+++|.|+|+++++ + . .+..+..+|.+
T Consensus 316 VsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke 395 (452)
T KOG1403|consen 316 VSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKE 395 (452)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 2 1 13345666775
Q ss_pred -CCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 420 -SGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 420 -~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.||++...|+ .+.+.|-||++.++++.++++..|+++|.-+.
T Consensus 396 ~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 396 LYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILTVME 439 (452)
T ss_pred hhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 4799987665 58899999999999999999999999887543
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-53 Score=421.16 Aligned_cols=375 Identities=52% Similarity=0.888 Sum_probs=320.1
Q ss_pred ccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC
Q 012368 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA 155 (465)
Q Consensus 76 ~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 155 (465)
++.+.|+++++++|+++||.||++||||.+++++++|||+||.|.+++.+++.+..+....++++...+|+++|+++++.
T Consensus 5 ~~~~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~ 84 (379)
T TIGR00707 5 TYGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSGA 84 (379)
T ss_pred ccCCCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCC
Confidence 35578999999999999999999999999999999999999999999999998764444456777899999999999998
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (465)
+++++++||++|++.++++++.+++..++ ++++|++++++|||+...+...++...+...+.+...++.+++++|+
T Consensus 85 ~~~~~~~sg~~a~~~a~~~~~~~~~~~~~----~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (379)
T TIGR00707 85 DRVFFCNSGAEANEAALKLARKYTGDKGK----EKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDI 160 (379)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHhhccCC----CCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCH
Confidence 89999999999999999998876641111 26899999999999998887766554433233455556677888999
Q ss_pred HHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecc
Q 012368 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315 (465)
Q Consensus 236 ~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK 315 (465)
+++++.+.+ ++++|+++|+++++|..+++.+++++|.++|++||+++|+||+|++|++.|.++.....++.||++||||
T Consensus 161 ~~l~~~~~~-~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK 239 (379)
T TIGR00707 161 ESLKKAIDD-ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAK 239 (379)
T ss_pred HHHHHHhhh-CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcc
Confidence 999999974 5789999999999998778999999999999999999999999999988876555556688899999999
Q ss_pred cCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
++++|+|+||+++++++++.+....+..+++.++++++++.++|+.++.+++.+++++++++++++|+++....+. ..+
T Consensus 240 ~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 318 (379)
T TIGR00707 240 GLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYPN-KEV 318 (379)
T ss_pred cccCCcccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhCCC-Ccc
Confidence 9999999999999999999998666677889999999999999998866778899999999999999887554443 345
Q ss_pred eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 396 RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 396 ~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++.|.++++.++.+..++.+.|.++||++.+.+. +++||++++.+|++++++++++|++++
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 319 RGKGLMLGIELEAPCKDIVKKALEKGLLVNCAGP-KVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred ccCceEEEEEecCcHHHHHHHHHHCCcEEeeCCC-CEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 5678899998855567899999999999998764 789999999999999999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=320.03 Aligned_cols=395 Identities=27% Similarity=0.380 Sum_probs=299.8
Q ss_pred cCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHH-HHhh-c
Q 012368 53 GSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD-QANV-L 130 (465)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~-~~~~-~ 130 (465)
.+||. .++++.+.-.++...+--.++...++.-|.|++|+|||.+||.++...++++|++||.+++++.+ ++.+ +
T Consensus 34 sIPGP---ks~~l~kel~~v~~t~~v~F~~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~p~~~~~l 110 (484)
T KOG1405|consen 34 SIPGP---KSQELKKELDKVQDTEAVHFFVDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATML 110 (484)
T ss_pred cCCCc---hhHHHHHHHhHhhcccceEEehhhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcChHHHHHH
Confidence 45553 56666655444333222235566789999999999999999999999999999999999988764 3222 2
Q ss_pred ccccCCCCCHHHHHHHHHHHh----hcC--CCeEEecCCHHHHHHHHHHHHHHHhh--hcCC---------------CCC
Q 012368 131 THVSNMYYSIPQIELAKRLVA----CSF--ADRVFFSNTGTEANEAAIKFARKFQR--HSNP---------------DSK 187 (465)
Q Consensus 131 ~~~~~~~~~~~~~~la~~l~~----~~~--~~~v~~~~sG~eA~~~al~~a~~~t~--~~~~---------------~~~ 187 (465)
...+.. ..-+..++++.|.+ .-+ .++|.+.-+|+.||+.|++.+.-+.. .++. .++
T Consensus 111 vnRPAL-g~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aPg 189 (484)
T KOG1405|consen 111 VNRPAL-GNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAPG 189 (484)
T ss_pred hccccc-cCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCC
Confidence 221111 11123344454444 333 77899999999999999998876542 1221 122
Q ss_pred CCCceEEEEcCCcccCccccccccCCCCcCC----CC-CCCCCCce--------EeeCC------CHHHHHhhcC-----
Q 012368 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRS----PF-EPVMPGVN--------FVEYG------NIEATRKLIQ----- 243 (465)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~----~~-~~~~~~~~--------~~~~~------d~~~le~~l~----- 243 (465)
.|.-.|+.|.++|||.+.+.++.+....... .| +|. ..+. .+.+| .++++|++|.
T Consensus 190 ~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPi-A~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k 268 (484)
T KOG1405|consen 190 APDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPI-APFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRKK 268 (484)
T ss_pred CCceeeeeeccccccccccccccccCccccccCCCCCCCCC-CCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 4566899999999999999998764332221 01 011 1111 11111 3778888886
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC--cccEEEecccCC-Cc
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLAKPLA-GG 320 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~--~pdi~t~sK~lg-~G 320 (465)
...++++|+||++++||....+++|++.|+++|++||+.+|+||||||.|.+|..|+++++++ .||++||||.+- ||
T Consensus 269 ~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gG 348 (484)
T KOG1405|consen 269 KKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGG 348 (484)
T ss_pred CCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCc
Confidence 247899999999999999999999999999999999999999999999999999999999988 589999999875 44
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-Cceeeeccc
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKDVRGLG 399 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g 399 (465)
+. -.++++- =.+..+..||.+.|.-.....++++++.++++.+++...++.|..+|.++.+++| .+...||+|
T Consensus 349 ----ff-h~~~frp-n~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrG 422 (484)
T KOG1405|consen 349 ----FF-HDEEFRP-NEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRG 422 (484)
T ss_pred ----cc-cCcccCC-CchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccc
Confidence 22 2233221 1123567899999999999999999999999999999999999999999999998 567899999
Q ss_pred eEEEEEecC--ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 400 LIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 400 ~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.|+.++++. .-..++..++-+||.+..+|. ..+||+|+++.++...+-+++++++.++.
T Consensus 423 TF~a~d~ps~~~Rdk~i~~~~~nGv~~GGCg~-~siRfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 423 TFIAWDCPSGSIRDKLILIARLNGVNLGGCGD-KSIRFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred eEEEEeCCChHHHHHHHHHHHHcCceeccccc-ceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence 999999842 235688888899999998887 78999999999999999999999998864
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=328.58 Aligned_cols=365 Identities=15% Similarity=0.121 Sum_probs=258.8
Q ss_pred hHHHHHHHHhccccccC--CCceEEEeeeccEEEeCCCCEEEecccCcccccCC-CCCHHHHHHHHHHHhhcc---cccC
Q 012368 62 NKEVMEAEKKLLVGTYN--RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLT---HVSN 135 (465)
Q Consensus 62 ~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~a~~~~~~~~~---~~~~ 135 (465)
.+.++.+.++...+.|. +.++.+++++|+++||.||++||||+++ ..+| |+||+|++|+.+++++.. +...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~ 84 (402)
T PRK07505 8 NKKRINRAEKFWDAAYDEGLNGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSSS 84 (402)
T ss_pred HHHHHHhhHHHHHHHHhcccccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 34444444343333333 4568899999999999999999999984 4688 999999999999998743 1111
Q ss_pred --CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 136 --MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 136 --~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
.+.++...+++++|++.++. ++++++||++|++.+++++..... + .++.+||+++++|||......
T Consensus 85 ~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~---~---~~~~~vi~~~~~~H~s~~~~~----- 152 (402)
T PRK07505 85 RTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHL---T---GGVPPHMVFDKNAHASLNILK----- 152 (402)
T ss_pred chhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhccc---C---CCCCCEEEEchhhhHhHHhhh-----
Confidence 13455688999999999887 777788999999999998763210 0 024569999999998542111
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc--cC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ--CG 291 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~--~g 291 (465)
... ....++..+|++|+++++++++++..+++++||++++|++ .+ +++|+++|++||++||+||+| ++
T Consensus 153 -~~~----~~~~~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~-~~----~~~i~~l~~~~~~~li~DEa~~~~~ 222 (402)
T PRK07505 153 -GIC----ADETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGGI-AP----VKELLRLQEKYGLFLYIDDAHGLSI 222 (402)
T ss_pred -hhh----hcCCeEEEeCCCCHHHHHHHHhcCCCEEEEEecccccCCc-CC----HHHHHHHHHHcCCEEEEECcccccC
Confidence 001 0114567788999999999997656889999999988654 33 899999999999999999998 56
Q ss_pred CCCCCccccccccCC-cccEE----EecccCCCccceeeEE-eCHHHHhhccCCCCcCCCCC--hHHHHHHHHHHHHHhc
Q 012368 292 LGRTGYLWAHEHYGI-FPDIM----TLAKPLAGGLPIGAAL-VTEKVASAINYGDHGSTFAG--SPLVCNAAIAVLDKIS 363 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~-~pdi~----t~sK~lg~G~~iG~v~-~~~~i~~~~~~~~~~~t~~~--~~~~~~aa~a~L~~~~ 363 (465)
+|++|.++..+.++. .||.+ |+||+++++ .|+++ .++++++.+....+..||++ ++++++++.++++.+.
T Consensus 223 ~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~ 300 (402)
T PRK07505 223 YGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHL 300 (402)
T ss_pred cCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHh
Confidence 888887666667776 67644 799999863 36766 47788888866556666654 4689999999998665
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEE-EEecC--ChHHHHHHHHHCCceEeecCC------CCEEE
Q 012368 364 NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG-IEFDV--SATPVVDACRDSGLLVLTAGK------GNVVR 434 (465)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~-i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lR 434 (465)
++.+.+.. +++++.+.... .. ....+++.+.++. +.++. ...++.+.|+++||++.+... .+++|
T Consensus 301 ~~~~~~~~----~~l~~~~~~~~-~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lR 374 (402)
T PRK07505 301 SEELDQLQ----QKLQNNIALFD-SL-IPTEQSGSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLR 374 (402)
T ss_pred ccCcHHHH----HHHHHHHHHHH-HH-HHhcCCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEE
Confidence 44433222 22222222110 00 0112344555442 33322 356799999999999987521 26899
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 435 LVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 435 i~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
|+|++.+|++|+++++++|++++++
T Consensus 375 i~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 375 IMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred EecCccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=319.54 Aligned_cols=341 Identities=18% Similarity=0.236 Sum_probs=262.2
Q ss_pred eEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-----CCCCCHHHHHHHHHHHhhcC-C
Q 012368 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-----NMYYSIPQIELAKRLVACSF-A 155 (465)
Q Consensus 82 ~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~-~ 155 (465)
+++.+++|+++| .||++||||.++.+.... +||+|++|+.+++++++.++ .+++.+.+.+|+++|+++++ .
T Consensus 94 ~~~~~~~G~~i~-~~G~~~id~~s~~~lgl~--~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~ 170 (481)
T PLN02822 94 PVLESAAGPHTI-INGKDVVNFASANYLGLI--GNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTP 170 (481)
T ss_pred CceecCCCCeEE-ECCceEEEeECCCcCCCC--CCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCC
Confidence 367789999999 899999999998663322 68999999999999854422 22455669999999999998 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (465)
+.|+|++|++ ++..+++.+ ++ +.++|++++.||+.....+.+++ ..+.++++||+
T Consensus 171 ~~i~~s~G~~-a~~sai~a~---~~---------~gd~Ii~d~~~H~s~~~~~~ls~------------~~~~~~~~nd~ 225 (481)
T PLN02822 171 DSILYSYGLS-TIFSVIPAF---CK---------KGDIIVADEGVHWGIQNGLYLSR------------STIVYFKHNDM 225 (481)
T ss_pred CEEEECCHHH-HHHHHHHHh---CC---------CCCEEEEeCCccHHHHHHHHHcC------------CeEEEECCCCH
Confidence 6787776655 778877744 32 44566688999988765554432 34556788898
Q ss_pred HHHHhhcC---C-----CCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc--CCCCCCcccccccc
Q 012368 236 EATRKLIQ---P-----GKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC--GLGRTGYLWAHEHY 304 (465)
Q Consensus 236 ~~le~~l~---~-----~~~-a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~--g~gr~g~~~~~~~~ 304 (465)
++++..++ . .++ ++|++|++++++|.+.+ +++|+++|++||++||+||+|+ .+|++|.+ ..+++
T Consensus 226 ~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~ 300 (481)
T PLN02822 226 ESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHF 300 (481)
T ss_pred HHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHc
Confidence 88877764 1 123 79999999999998877 9999999999999999999998 34666665 56778
Q ss_pred CC---cccEEE--ecccCCC-ccceeeEEeCHHHHhhccCCCCcCCCCCh--HHHHHHHHHHHHHhcC-chHHHHHHHHH
Q 012368 305 GI---FPDIMT--LAKPLAG-GLPIGAALVTEKVASAINYGDHGSTFAGS--PLVCNAAIAVLDKISN-PAFLASVSKKG 375 (465)
Q Consensus 305 ~~---~pdi~t--~sK~lg~-G~~iG~v~~~~~i~~~~~~~~~~~t~~~~--~~~~~aa~a~L~~~~~-~~~~~~~~~~~ 375 (465)
++ .+|+++ |||++|. | |++++++++++.+....++.+|+++ |..++|+.++|+.++. ++..+++++++
T Consensus 301 ~v~~~~~dii~~s~sKalg~~G---G~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~ 377 (481)
T PLN02822 301 GVPIEKIDIITAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENI 377 (481)
T ss_pred CCCCCCCeEEEecchhhhhhCC---eEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 87 688887 7899973 4 7899999999998766677888876 8888999999988755 67889999999
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEecCC----------hHHHHHHHH-HCCceEeecCC--------CCEEEEe
Q 012368 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------ATPVVDACR-DSGLLVLTAGK--------GNVVRLV 436 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~----------~~~~~~~l~-~~Gv~v~~~~~--------~~~lRi~ 436 (465)
+++++.|.+.. .++. ...+.+.++++.++.. ..++++.|+ ++||++.+... +..+|++
T Consensus 378 ~~l~~~L~~~~-g~~~--~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~ 454 (481)
T PLN02822 378 ALLHKGLSDIP-GLSI--GSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLF 454 (481)
T ss_pred HHHHHHHHhcC-Cccc--CCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEE
Confidence 99999887641 1221 2234466666766321 256889998 88999986521 2469999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 437 PPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++..+|++||++++++|++++.++-
T Consensus 455 is~~~t~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 455 VSAGHTESDILKASESLKRVAASVL 479 (481)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=288.46 Aligned_cols=328 Identities=17% Similarity=0.163 Sum_probs=249.2
Q ss_pred CCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhccccc----C-CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS----N-MYYSIPQIELAKRLVACSFADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~----~-~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~ 169 (465)
+|+++|+|+++.+ ||. +||+|++|+.++++++.++. . .+.++...+|+++|++.++.+++++++||++|++
T Consensus 43 ~~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~ 119 (406)
T PRK13393 43 GPREVTVWCSNDY---LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNW 119 (406)
T ss_pred CCccEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHH
Confidence 4689999999876 887 89999999999998865421 1 1234468999999999999889999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---CCC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGK 246 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~ 246 (465)
.|++.+... .++++|+++..||+.+...+...+ ..+..++++|++++++.++ +++
T Consensus 120 ~ai~~l~~~----------~~g~~I~~~~~~H~s~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~ 177 (406)
T PRK13393 120 AALSTLGSR----------LPGCVILSDELNHASMIEGIRHSR------------AEKRIFRHNDPADLERKLSDLDPHR 177 (406)
T ss_pred HHHHHhhcC----------CCCCEEEEccchhHHHHHHHHHcC------------CeEEEeCCCCHHHHHHHHHhccCCC
Confidence 999954321 133588899999998876554332 1234567789999988875 235
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CC-CCCCccccccccCCc--ccEE--EecccCCCc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLWAHEHYGIF--PDIM--TLAKPLAGG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-gr~g~~~~~~~~~~~--pdi~--t~sK~lg~G 320 (465)
+++|++|++++++|.+.+ +++|.++|++||+++|+||+|+ |+ |+.|.++ .++.++. +|++ ||||+++.
T Consensus 178 ~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~- 251 (406)
T PRK13393 178 PKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGV- 251 (406)
T ss_pred CEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcc-
Confidence 789999999999998877 9999999999999999999997 65 7777654 3555554 5776 89999984
Q ss_pred cceeeEEeCHHHHhhccCCCCc--CCCCChHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHcCCCceeeec
Q 012368 321 LPIGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISNPA-FLASVSKKGHYFKETLKQKLARNPHVKDVRG 397 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~--~t~~~~~~~~~aa~a~L~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 397 (465)
..||+++++++++.+...... .+.+.+|++++++.++|+.+.+.. ..++++++.+++++.|+++ .++ .+++
T Consensus 252 -~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~ 325 (406)
T PRK13393 252 -MGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA--GIP---HLPN 325 (406)
T ss_pred -cCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc--CCC---cCCC
Confidence 227888899988887653322 356678899999999999875432 3455667777888877663 232 3356
Q ss_pred cceEEEEEecC--ChHHHHHHHHH-CCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 398 LGLIIGIEFDV--SATPVVDACRD-SGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 398 ~g~~~~i~~~~--~~~~~~~~l~~-~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.|.++.+.+.. .+.++.+.|++ +||++.+... .+.+||+|++.+|++|+++++++|+++++++
T Consensus 326 ~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 326 PSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 78887776632 34678888987 5999976321 2679999999999999999999999988764
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=282.37 Aligned_cols=328 Identities=19% Similarity=0.205 Sum_probs=244.5
Q ss_pred CCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~ 169 (465)
+|+++++|+++.+ ||. +||+|++|+.++++++..++. .+.++...+|+++|+++++.+..++++||++||.
T Consensus 43 ~~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~ 119 (402)
T TIGR01821 43 GAKDVTVWCSNDY---LGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVAND 119 (402)
T ss_pred CCeeEEEeEccCc---CCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHH
Confidence 4699999999876 665 889999999999988654321 1345668999999999999778899999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---CCC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGK 246 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~ 246 (465)
.+++++... .++.+++.+..||+.....+...+. .+..++++|+++++++++ +.+
T Consensus 120 ~ai~~l~~~----------~~~~~v~~~~~~h~s~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~~~~~~~ 177 (402)
T TIGR01821 120 ATLATLAKI----------IPGCVIFSDELNHASMIEGIRHSGA------------EKFIFRHNDVAHLEKLLQSVDPNR 177 (402)
T ss_pred HHHHHhhCC----------CCCCEEEEcchHhHHHHHHHHHcCC------------eEEEECCCCHHHHHHHHHhccCCC
Confidence 999987632 1345777788899887655443321 122355678899988886 235
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCccccccccCC--cccEE--EecccCCCc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI--FPDIM--TLAKPLAGG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~g~~~~~~~~~~--~pdi~--t~sK~lg~G 320 (465)
+++|++|++++++|.+.+ +++|+++|++||++||+||+|+ | +|..|.+. .+.+++ .+|++ ||||++|+
T Consensus 178 ~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~- 251 (402)
T TIGR01821 178 PKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGGI-AERDGLMHRIDIIEGTLAKAFGV- 251 (402)
T ss_pred CeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCcc-chhccCCCCCeEEEEechhhhcc-
Confidence 789999999999998876 9999999999999999999998 4 34444432 344454 46777 89999984
Q ss_pred cceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHcCCCceeeec
Q 012368 321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNP-AFLASVSKKGHYFKETLKQKLARNPHVKDVRG 397 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 397 (465)
..||+++++++++.+.... ...+.+.+|++++++.++|+.+++. ...+++.++.+++++.|+++ .++ .+.+
T Consensus 252 -~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~ 325 (402)
T TIGR01821 252 -VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL--GIP---VIPN 325 (402)
T ss_pred -CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc--CCC---cCCC
Confidence 2278889999988875322 2345568899999999999987653 34556667777887777654 232 2334
Q ss_pred cceEEEEEecC--ChHHHHHHHHH-CCceEeecC------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 398 LGLIIGIEFDV--SATPVVDACRD-SGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 398 ~g~~~~i~~~~--~~~~~~~~l~~-~Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.++.+.++. .+.++.+.|++ +||++.+.. ...++|+++++.+|++|+++++++|+++++++
T Consensus 326 ~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 326 PSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 57777776632 34678888875 599997642 12589999999999999999999999998765
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=280.20 Aligned_cols=328 Identities=18% Similarity=0.194 Sum_probs=244.8
Q ss_pred CCEEEecccCcccccCCC-CCHHHHHHHHHHHhhccccc----CC-CCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS----NM-YYSIPQIELAKRLVACSFADRVFFSNTGTEANEA 170 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~----~~-~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~ 170 (465)
|++++||+++.+ ||+ .||+|++|+.+++++...++ .. ++++...+|+++|+++++.+..++++||++|+..
T Consensus 45 ~~~~~~~~s~dy---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ 121 (407)
T PRK09064 45 EREVTVWCSNDY---LGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDA 121 (407)
T ss_pred CceEEEEECCCC---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHH
Confidence 599999999766 787 58999999999998754321 11 2466689999999999987777888899999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---CCCe
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGKT 247 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~ 247 (465)
+++++.... ++.+++.+..+|+.....+...+ .....++++|+++++++++ ++++
T Consensus 122 ai~~l~~~~----------~~~~i~~~~~~h~s~~~~~~~~~------------~~~~~~~~~d~~~le~~l~~~~~~~~ 179 (407)
T PRK09064 122 TLSTLAKLI----------PDCVIFSDELNHASMIEGIRRSR------------CEKHIFRHNDVAHLEELLAAADPDRP 179 (407)
T ss_pred HHHHHhCCC----------CCCEEEEeCcchHHHHHHHHHcC------------CcEEEECCCCHHHHHHHHHhccCCCC
Confidence 999876321 34566777666776644433221 1123456679999999886 2457
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCccccccccCC--cccEE--EecccCCCcc
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI--FPDIM--TLAKPLAGGL 321 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~g~~~~~~~~~~--~pdi~--t~sK~lg~G~ 321 (465)
++|+++++++++|.+.+ +++|+++|++||++||+||+|+ | ||+.|.++ .++.++ .+|++ ||||++|.
T Consensus 180 ~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~-- 252 (407)
T PRK09064 180 KLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGV-- 252 (407)
T ss_pred eEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhc--
Confidence 89999999999998876 9999999999999999999997 5 57777654 345554 46877 89999974
Q ss_pred ceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc
Q 012368 322 PIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNP-AFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 398 (465)
..|++++++++++.+.... +..+.+.+|.+++++.++|+.+++. ...++++++++++++.|+++ .++. +.+.
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~ 327 (407)
T PRK09064 253 MGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA--GIPV---MPNE 327 (407)
T ss_pred cCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCCC---CCCC
Confidence 2288889999888775322 2235567889999999999988654 34577888888888888764 2322 2344
Q ss_pred ceEEEEEecC--ChHHHHHHHHH-CCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 399 GLIIGIEFDV--SATPVVDACRD-SGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 399 g~~~~i~~~~--~~~~~~~~l~~-~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.++.+.++. .+.++.+.|++ +||++.+... .+++||++++.+|++|++++++.|+++++++.
T Consensus 328 ~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~~ 399 (407)
T PRK09064 328 SHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLG 399 (407)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6677776632 35678888875 5999976421 25799999999999999999999999987653
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=277.12 Aligned_cols=339 Identities=20% Similarity=0.259 Sum_probs=247.5
Q ss_pred cccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc---cCCC--CCHHHHHHHH
Q 012368 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV---SNMY--YSIPQIELAK 147 (465)
Q Consensus 73 ~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~---~~~~--~~~~~~~la~ 147 (465)
....|.+.+++..+++|.+++|.+||+|||+. +||+|++++.+++++.... +..+ ..+...+|++
T Consensus 37 ~~~~~~~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~ 106 (407)
T PRK07179 37 VNKNWNGKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK 106 (407)
T ss_pred hccCcCCceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH
Confidence 44457788999999999999999999999986 6899999999999875211 2222 2346889999
Q ss_pred HHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCc
Q 012368 148 RLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV 227 (465)
Q Consensus 148 ~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (465)
+|+++++.+.+++++||++|+..+++.+.. +++.|++.... |..........+ ..+
T Consensus 107 ~la~~~g~~~~~~~~sG~~An~~~l~~l~~-----------~g~~v~~~~~~-h~s~~~~~~~~g------------~~~ 162 (407)
T PRK07179 107 KLAAFTGFESCLLCQSGWAANVGLLQTIAD-----------PNTPVYIDFFA-HMSLWEGVRAAG------------AQA 162 (407)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHHhCC-----------CCCEEEEECCc-CHHHHHHHHHCC------------CeE
Confidence 999999988889999999999999997652 46666665433 333322211111 122
Q ss_pred eEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCccccccccC
Q 012368 228 NFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYG 305 (465)
Q Consensus 228 ~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~gr~g~~~~~~~~~ 305 (465)
..++++|+++|+++++++++++|+++++++++|.+.+ +++|.++|++||++||+||+|+. +|++|.++ ...++
T Consensus 163 ~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~ 237 (407)
T PRK07179 163 HPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VAELG 237 (407)
T ss_pred EEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHhcC
Confidence 3345579999999997545788999999999998877 89999999999999999999973 33344432 34455
Q ss_pred Cc--ccEE--EecccCCCccceeeEEeCHHHHhhccCC----CCcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHH
Q 012368 306 IF--PDIM--TLAKPLAGGLPIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGH 376 (465)
Q Consensus 306 ~~--pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~ 376 (465)
+. +|++ +++|++++ |+|++++++++++.+... .+++|+ ++..++++.++++.+.. ++..++++++.+
T Consensus 238 ~~~~vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~~~~~ 313 (407)
T PRK07179 238 LTSRVHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLHANAR 313 (407)
T ss_pred CCCCCCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 53 4775 46899964 799999999988777522 233333 34555566677877654 357788888888
Q ss_pred HHHHHHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEe----ecCC--CCEEEEecCCCCcHHHHHH
Q 012368 377 YFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVL----TAGK--GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 377 ~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~----~~~~--~~~lRi~~~~~~t~e~i~~ 448 (465)
++++.|.++ .+ .+.+.+.++++.++. ....+.+.|.++||++. |... .+.+||+++..+|++|+++
T Consensus 314 ~l~~~L~~~--g~----~v~~~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~ 387 (407)
T PRK07179 314 FLREGLSEL--GY----NIRSESQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDR 387 (407)
T ss_pred HHHHHHHHc--CC----CCCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHH
Confidence 888888764 22 223567888887742 34567888999999743 2211 3689999999999999999
Q ss_pred HHHHHHHHHHHh
Q 012368 449 AVEILCKTLPVL 460 (465)
Q Consensus 449 ~l~~l~~~l~~~ 460 (465)
++++|++++++.
T Consensus 388 ~~~~l~~~~~~~ 399 (407)
T PRK07179 388 VLEVCREARDEV 399 (407)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=272.79 Aligned_cols=337 Identities=21% Similarity=0.159 Sum_probs=244.7
Q ss_pred eEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhccccc-----CCCCCHHHHHHHHHHHhhcCC
Q 012368 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-----NMYYSIPQIELAKRLVACSFA 155 (465)
Q Consensus 82 ~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~ 155 (465)
.++.+++|+++|+ +|++|||+.++. ++|| ++|+|++++.+++....... ..+..+...+++++++++++.
T Consensus 24 ~~~~~~~g~~~~~-~g~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~ 99 (385)
T PRK05958 24 RPREGGAGRWLVV-DGRRMLNFASND---YLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGA 99 (385)
T ss_pred cccccCCCceeEe-CCceEEEeeCCC---cccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC
Confidence 3567999999997 999999999974 4787 78999999999997643211 123456688999999999986
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (465)
+.++++++|++++..+++.+. + +++.|++.++.| +.......+.+ ..+..++.+|+
T Consensus 100 ~~~i~~~~g~~~~~~~l~~~~---~--------~gd~V~~~~~~~-~~~~~~~~~~g------------~~~~~~~~~d~ 155 (385)
T PRK05958 100 ERALLFSSGYAANLAVLTALA---G--------KGDLIVSDKLNH-ASLIDGARLSR------------ARVRRYPHNDV 155 (385)
T ss_pred CcEEEECcHHHHHHHHHHHhC---C--------CCCEEEEeCccC-HHHHHHHHhcC------------CceEEeCCCCH
Confidence 677778889999988776543 2 578888877665 44333332221 12334556689
Q ss_pred HHHHhhcCCC--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCccccc-cccCCccc-
Q 012368 236 EATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAH-EHYGIFPD- 309 (465)
Q Consensus 236 ~~le~~l~~~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~gr~g~~~~~-~~~~~~pd- 309 (465)
++++++++.. ++++++++++++.+|...+ +++|+++|++||++||+||+|.. +++.|..+.. ......+|
T Consensus 156 ~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~ 231 (385)
T PRK05958 156 DALEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDV 231 (385)
T ss_pred HHHHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCce
Confidence 9999999742 4788899998888887655 99999999999999999999953 3334432211 11222455
Q ss_pred --EEEecccCCCccceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Q 012368 310 --IMTLAKPLAGGLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 310 --i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~ 384 (465)
+.++||++++ +.|++++++++++.+... .+..+.+.+++.++++.++|+.+.+ +...+++.++++++.+.|++
T Consensus 232 i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~ 309 (385)
T PRK05958 232 ILVGTLGKALGS--SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRA 309 (385)
T ss_pred EEEEechhhccc--CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5689999974 338899999888876432 2333445778888888899987755 36777888888888888776
Q ss_pred HHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecC------CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 385 KLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 385 ~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+ .. ..+++.|.++++.++. ...++.+.|.++||.+.+.. ..+++|++++..++++++++++++|+++
T Consensus 310 ~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 310 L--GF---QLMDSQSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred c--CC---CcCCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 4 22 2234567888888742 45679999999999997531 1268999999999999999999999875
Q ss_pred H
Q 012368 457 L 457 (465)
Q Consensus 457 l 457 (465)
+
T Consensus 385 ~ 385 (385)
T PRK05958 385 L 385 (385)
T ss_pred C
Confidence 3
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=270.09 Aligned_cols=339 Identities=17% Similarity=0.139 Sum_probs=244.0
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcc--cccCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEA 170 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~ 170 (465)
.+.||+..|.+.. ..++.+++++.+++.... ++...+..+.++++++++.+.++ ++ .|++|+|++||+..
T Consensus 28 ~~vi~l~iG~Pd~---~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~ 104 (393)
T COG0436 28 EDVIDLSIGEPDF---PTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL 104 (393)
T ss_pred CCEEEeCCCCCCC---CCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence 4688888876632 267889999999988753 22333344557777777777765 44 49999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
++.+.. +++|+||+++|.|..+.......++.+... ++... ..+. .|+++|+++++++..++
T Consensus 105 ~~~a~~-----------~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v----~l~~~~~~f~--~d~~~l~~~i~~ktk~i 167 (393)
T COG0436 105 AFLALL-----------NPGDEVLIPDPGYPSYEAAVKLAGGKPVPV----PLDEEENGFK--PDLEDLEAAITPKTKAI 167 (393)
T ss_pred HHHHhc-----------CCCCEEEEeCCCCcCHHHHHHhcCCEEEEE----eCCcCccCCc--CCHHHHHhhcCccceEE
Confidence 999777 379999999999998887777666655432 21111 1122 28999999999755666
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cc-cccccC---CcccEEEecccCCC-ccce
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LW-AHEHYG---IFPDIMTLAKPLAG-GLPI 323 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~-~~~~~~---~~pdi~t~sK~lg~-G~~i 323 (465)
++++|+||+|. +++++++++|.++|++||++||+||+|.+|.+.|. .. ..+..+ ....+-+|||.++. |||+
T Consensus 168 ~ln~P~NPTGa--v~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRv 245 (393)
T COG0436 168 ILNSPNNPTGA--VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRI 245 (393)
T ss_pred EEeCCCCCcCc--CCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccce
Confidence 67788888874 46999999999999999999999999999977773 22 222222 22334479999996 9999
Q ss_pred eeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccceE
Q 012368 324 GAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLGLI 401 (465)
Q Consensus 324 G~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~ 401 (465)
||++++ +++++.+.......+++.+.++|.|+.++|+.-.+.+..+..++..+..++.+.+.+.+.+.+.... ..|.|
T Consensus 246 G~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~ 325 (393)
T COG0436 246 GWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAF 325 (393)
T ss_pred eEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeE
Confidence 999999 8888887655566778899999999999998542223444444444444555555555555444444 44555
Q ss_pred -EEEEec--CChHHHHHHHHH-CCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 402 -IGIEFD--VSATPVVDACRD-SGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 402 -~~i~~~--~~~~~~~~~l~~-~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++..++ .+..+|+..|++ .||.+.|+.. .+++|++ +..++++++++++++.++++..
T Consensus 326 Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 326 YLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred EEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHHHHHHhc
Confidence 445554 477899999886 5899998632 2578884 5667799999999999988754
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=268.46 Aligned_cols=342 Identities=17% Similarity=0.184 Sum_probs=242.7
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccc-----cCCCCCHHHHHHHHHHHhh
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHV-----SNMYYSIPQIELAKRLVAC 152 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~-----~~~~~~~~~~~la~~l~~~ 152 (465)
+.|.++.+++|+++| .||++||||.++ ..+|| ++|.+++++.+++++.... ...+..+.+.++++++++.
T Consensus 15 ~~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~ 90 (385)
T TIGR01825 15 ISIRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKF 90 (385)
T ss_pred ccccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHH
Confidence 468899999999999 999999999885 33788 8999999999998764321 1123456689999999998
Q ss_pred cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC
Q 012368 153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 153 ~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
++.+..+++++|++|+..+++.+. ++++.|++.++.|+... ......+. ....++.
T Consensus 91 ~g~~~~i~~~sG~~a~~~a~~~~~-----------~~gd~vi~~~~~~~~~~-~~~~~~g~------------~~~~~~~ 146 (385)
T TIGR01825 91 KKTEAALVFQSGFNTNQGVLSALL-----------RKGDIVLSDELNHASII-DGLRLTKA------------TKKIYKH 146 (385)
T ss_pred hCCCcEEEECcHHHHHHHHHHHhC-----------CCCCEEEEEccccHHHH-HHHHhcCC------------ceEEeCC
Confidence 885555666778999998888654 15777887776655443 22222211 1122344
Q ss_pred CCHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCccccccccCCc
Q 012368 233 GNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGIF 307 (465)
Q Consensus 233 ~d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~gr~g~~~~~~~~~~~ 307 (465)
.|++++++.++. .++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+. +++.|.. ....+++.
T Consensus 147 ~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~ 221 (385)
T TIGR01825 147 ADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGRG-TVHHFGLE 221 (385)
T ss_pred CCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCc-cHhhcCCC
Confidence 588888887752 25788889998888887765 89999999999999999999964 3333432 22233333
Q ss_pred ----ccEEEecccCCCccceeeEEeCHHHHhhccCCCC--cCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHH
Q 012368 308 ----PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKE 380 (465)
Q Consensus 308 ----pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~--~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~ 380 (465)
..+.+|||++++ +.||+++++++++.+..... ..+...+++.++++.++++.+.+ .+..+++.++++++.+
T Consensus 222 ~~~~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~ 299 (385)
T TIGR01825 222 DKVDIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKA 299 (385)
T ss_pred cCCcEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 335689999964 44889999999888754321 11223567888888888887643 4577888888888888
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecC------CCCEEEEecCCCCcHHHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEI 452 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~ 452 (465)
.|.++ .++. ..+.+.++.+.++. ...++++.|+++||.+.+.. ....+|++|++.++++++++++++
T Consensus 300 ~L~~~--g~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~ 374 (385)
T TIGR01825 300 GLGKL--GYDT---GGSETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDA 374 (385)
T ss_pred HHHHc--CCCC---CCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 88764 2322 22334455555532 35679999999999885321 126799999999999999999999
Q ss_pred HHHHHHHh
Q 012368 453 LCKTLPVL 460 (465)
Q Consensus 453 l~~~l~~~ 460 (465)
|+++++++
T Consensus 375 l~~~~~~~ 382 (385)
T TIGR01825 375 YEKVGKEL 382 (385)
T ss_pred HHHHHHHh
Confidence 99988654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=268.16 Aligned_cols=327 Identities=16% Similarity=0.238 Sum_probs=243.3
Q ss_pred EecccCcccccCCC-CCHHHHHHHHHHHhhccccc-----CCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHH
Q 012368 101 LDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-----NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKF 174 (465)
Q Consensus 101 lD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~ 174 (465)
|||+++.+ ||. +||++++++.+++++++.++ .++......+|+++++++++.+..++++||+.|+..++..
T Consensus 1 ~~f~s~dy---Lgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~ 77 (392)
T PLN03227 1 LNFATHDF---LSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAA 77 (392)
T ss_pred CCCcCcCc---cCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHH
Confidence 46777665 665 88999999999998743221 1122345889999999999977888888999999888776
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---C-------
Q 012368 175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---P------- 244 (465)
Q Consensus 175 a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~------- 244 (465)
.. .++|.|++.++.|.+...+. .+.. ..+..++++|++++++.++ +
T Consensus 78 l~-----------~~GD~Vl~~~~~h~s~~~~~-~l~~------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~ 133 (392)
T PLN03227 78 FA-----------KRGDLLVVDRGVNEALLVGV-SLSR------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKR 133 (392)
T ss_pred hC-----------CCCCEEEEeccccHHHHHHH-HHcC------------CeEEEeCCCCHHHHHHHHHHhhhhcccccc
Confidence 43 26888998888875443222 2111 2344567777776666442 1
Q ss_pred ---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc--CCCCCCccccccccCCcc----cEEEecc
Q 012368 245 ---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC--GLGRTGYLWAHEHYGIFP----DIMTLAK 315 (465)
Q Consensus 245 ---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~--g~gr~g~~~~~~~~~~~p----di~t~sK 315 (465)
.++.+|++||+++++|.+++ +++|+++|++||+++|+||+|+ .+|++|. +..+++++.| |++++|+
T Consensus 134 ~~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sl 208 (392)
T PLN03227 134 KPTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSL 208 (392)
T ss_pred ccCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeec
Confidence 24688999999999998877 9999999999999999999997 2344444 5678889988 9998774
Q ss_pred cCCCccceeeEEeCHHHHhhccCCCCcCCCCCh--HHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGS--PLVCNAAIAVLDK-ISNPAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~--~~~~~aa~a~L~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
+-+.|.+.|++++++++++.+....++.+|+++ |+.++|+.+++.. ++.+++.++++++++++++.|++ ..++.+
T Consensus 209 sk~~g~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~--~~~~~~ 286 (392)
T PLN03227 209 ENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN--SSHPYA 286 (392)
T ss_pred hhhhhccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh--cCCccc
Confidence 433356678888999998877655566778775 7788888877755 45678899999999999999986 355655
Q ss_pred eeeec--------cceEEEEEecCC-----------hHHHHHHHHHCCceEeecC----------CCCEEEEecCCCCcH
Q 012368 393 KDVRG--------LGLIIGIEFDVS-----------ATPVVDACRDSGLLVLTAG----------KGNVVRLVPPLIISE 443 (465)
Q Consensus 393 ~~~~~--------~g~~~~i~~~~~-----------~~~~~~~l~~~Gv~v~~~~----------~~~~lRi~~~~~~t~ 443 (465)
..+++ .|.++.+++... ..++.+.|+++|+++.+.+ +...+|++++..+|+
T Consensus 287 ~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~ 366 (392)
T PLN03227 287 LKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTR 366 (392)
T ss_pred cccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCH
Confidence 55555 356788888321 2478889999999986422 135689999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012368 444 QELDQAVEILCKTLPVLD 461 (465)
Q Consensus 444 e~i~~~l~~l~~~l~~~~ 461 (465)
+||++++++|+++++++.
T Consensus 367 eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 367 EDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988753
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=267.62 Aligned_cols=342 Identities=18% Similarity=0.200 Sum_probs=242.5
Q ss_pred ceEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHHhhcC
Q 012368 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSF 154 (465)
Q Consensus 81 p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~~~~ 154 (465)
+..+++++|.++||.+|++||||+++. ++|| ++|.+.+++.+++++..+.+. .+..+.+.++++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~g~~~i~l~~~~---~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g 101 (397)
T PRK06939 25 ERVITSPQGADITVADGKEVINFCANN---YLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG 101 (397)
T ss_pred cccccCCCCceEEecCCCeEEEeeccC---ccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC
Confidence 457789999999999999999999864 3677 789999999999876433211 1234567899999999988
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN 234 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (465)
.+..+++++|++++..+++.+. .+++.|++.+|+|++........+ ..+..++.+|
T Consensus 102 ~~~~i~~tsG~~a~~~~~~~l~-----------~~gd~vi~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d 157 (397)
T PRK06939 102 TEDAILYSSCFDANGGLFETLL-----------GKEDAIISDALNHASIIDGVRLCK-------------AKRYRYANND 157 (397)
T ss_pred CCcEEEEcChHHHHHHHHHHhC-----------CCCCEEEEEhhhhHHHHHHHHhcC-------------CceEEeCCCC
Confidence 4444555556999999887654 268999999999977654332221 1223344568
Q ss_pred HHHHHhhcCC---C--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CC-CCCCccccccccCC-
Q 012368 235 IEATRKLIQP---G--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLWAHEHYGI- 306 (465)
Q Consensus 235 ~~~le~~l~~---~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-gr~g~~~~~~~~~~- 306 (465)
++++++.++. . ++++|+++++++..|...+ +++|.++|++||++||+||+|+ |+ +..|.. ....+++
T Consensus 158 ~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~ 232 (397)
T PRK06939 158 MADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVM 232 (397)
T ss_pred HHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCC
Confidence 9999888752 2 5678888888888777544 9999999999999999999995 32 223321 2233343
Q ss_pred -cccEE--EecccCCCccceeeEEeCHHHHhhccCCCCcC--CCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHH
Q 012368 307 -FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGS--TFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKE 380 (465)
Q Consensus 307 -~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~--t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~ 380 (465)
.+|++ ++||++++ +|+||+++++++++.+....... +.+.++..++++.++++.+.+ +++.++++++.+++++
T Consensus 233 ~~~~i~~~S~sK~~~g-~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~ 311 (397)
T PRK06939 233 DRVDIITGTLGKALGG-ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFRE 311 (397)
T ss_pred CCCcEEEEECHHHhCc-cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35666 78999964 59999999999988876432211 222346667777888887643 3566777777777777
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecC-----C-CCEEEEecCCCCcHHHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-----K-GNVVRLVPPLIISEQELDQAVEI 452 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~-----~-~~~lRi~~~~~~t~e~i~~~l~~ 452 (465)
.|++. .+. ...+.+.++.+.+. .+..++++.|+++||.+.+.. . .+.+|+++++.++++++++++++
T Consensus 312 ~L~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~ 386 (397)
T PRK06939 312 GMTAA--GFT---LGPGEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDA 386 (397)
T ss_pred HHHHc--CCC---cCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 77653 121 22345666655553 235779999999999887531 1 25799999998999999999999
Q ss_pred HHHHHHHh
Q 012368 453 LCKTLPVL 460 (465)
Q Consensus 453 l~~~l~~~ 460 (465)
|+++++++
T Consensus 387 L~~~~~~~ 394 (397)
T PRK06939 387 FEKVGKEL 394 (397)
T ss_pred HHHHHHHh
Confidence 99988764
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=266.01 Aligned_cols=344 Identities=19% Similarity=0.200 Sum_probs=247.1
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccc--cCC---CCCHHHHHHHHHHHhh
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHV--SNM---YYSIPQIELAKRLVAC 152 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~--~~~---~~~~~~~~la~~l~~~ 152 (465)
+.|..+.+++|.++++.+|++||||+++.+ ||+ .+|++++++.+++.+.+.. +.. +..+...++++.++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~---lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~ 95 (393)
T TIGR01822 19 KSERIITSPQGADIRVADGREVLNFCANNY---LGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAF 95 (393)
T ss_pred CcccccccCCCceEEecCCceEEEeeCCCc---cccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHH
Confidence 567788899999999999999999999854 677 5899999999998874221 111 2244578999999999
Q ss_pred cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC
Q 012368 153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 153 ~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
++.+.+++++||++|+..++..+. .++|.|++.++.|++.......... ....++.
T Consensus 96 ~g~~~~ii~~~~~~a~~~~~~~l~-----------~~gd~vi~~~~~~~s~~~~~~~~~~-------------~~~~~~~ 151 (393)
T TIGR01822 96 LGTEDTILYASCFDANGGLFETLL-----------GAEDAIISDALNHASIIDGVRLCKA-------------KRYRYAN 151 (393)
T ss_pred hCCCcEEEECchHHHHHHHHHHhC-----------CCCCEEEEeccccHHHHHHHHhcCC-------------ceEEeCC
Confidence 997788888999999998777553 1688999998888765543322111 1122345
Q ss_pred CCHHHHHhhcCC---C--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc--ccccccC
Q 012368 233 GNIEATRKLIQP---G--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL--WAHEHYG 305 (465)
Q Consensus 233 ~d~~~le~~l~~---~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~--~~~~~~~ 305 (465)
+|++++++++++ . ++++|+++++++++|.+.+ +++|.++|++||++||+||+|. +|..|.. ......+
T Consensus 152 ~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~-~g~~~~~~~~~~~~~~ 226 (393)
T TIGR01822 152 NDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHA-TGFLGPTGRGSHELCG 226 (393)
T ss_pred CCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCcc-ccCcCCCCCchHHhcC
Confidence 799999998863 2 5778889988888887765 9999999999999999999994 3333221 1122233
Q ss_pred C--cccEE--EecccCCCccceeeEEeCHHHHhhccCCCCcCCC--CChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHH
Q 012368 306 I--FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTF--AGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYF 378 (465)
Q Consensus 306 ~--~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~--~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l 378 (465)
+ .+|++ ++||+++ |+|+||+++++++++.+........+ +.++..++++.++|+.++. ++..++++++.+++
T Consensus 227 ~~~~~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l 305 (393)
T TIGR01822 227 VMGRVDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYF 305 (393)
T ss_pred CCCCCeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3 35666 7899987 47999999999998887643222222 2356667778888877643 45677888888888
Q ss_pred HHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecC------CCCEEEEecCCCCcHHHHHHHH
Q 012368 379 KETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG------KGNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l 450 (465)
++.|++. .+.. ..+.+.++.+.+. ....++++.|+++||++.... ....+|+++++.+|++||++++
T Consensus 306 ~~~L~~~--g~~~---~~~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~ 380 (393)
T TIGR01822 306 RERMEAA--GFDI---KPADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAV 380 (393)
T ss_pred HHHHHHc--CCCC---CCCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHH
Confidence 8877653 2221 1223455555552 235679999999999986321 1146999999999999999999
Q ss_pred HHHHHHHHHh
Q 012368 451 EILCKTLPVL 460 (465)
Q Consensus 451 ~~l~~~l~~~ 460 (465)
++|+++++++
T Consensus 381 ~~l~~~~~~~ 390 (393)
T TIGR01822 381 EAFTRIGREL 390 (393)
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=257.61 Aligned_cols=327 Identities=21% Similarity=0.244 Sum_probs=252.2
Q ss_pred ccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHHhhcCCCeEEecC
Q 012368 89 GCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSN 162 (465)
Q Consensus 89 G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~v~~~~ 162 (465)
+..++ .+|++++||+||.+ ||. +||++++|+.+++++.+.+.. .+..+.+.+|+++|++++|.+..++.+
T Consensus 31 ~~~~~-~~~~~~~nf~SNdY---LGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~ 106 (388)
T COG0156 31 GLAIR-ADGRKVLNFCSNDY---LGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFS 106 (388)
T ss_pred Cccee-cCCceeEeeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEc
Confidence 44333 45999999999987 786 899999999999998533211 245667999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhc
Q 012368 163 TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242 (465)
Q Consensus 163 sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 242 (465)
||..||..++.... .++.+|+.+.-.|.+......++. ..+..+.+||+++||+++
T Consensus 107 SGy~AN~~~i~~l~------------~~~dli~~D~lnHASiidG~rls~------------a~~~~f~HnD~~~Le~~l 162 (388)
T COG0156 107 SGFVANLGLLSALL------------KKGDLIFSDELNHASIIDGIRLSR------------AEVRRFKHNDLDHLEALL 162 (388)
T ss_pred ccchhHHHHHHHhc------------CCCcEEEEechhhhhHHHHHHhCC------------CcEEEecCCCHHHHHHHH
Confidence 99999999999776 367799999999998877666553 334557889999999999
Q ss_pred CC---C--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--cccccccCCcc---cEE-
Q 012368 243 QP---G--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHYGIFP---DIM- 311 (465)
Q Consensus 243 ~~---~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~~~~~~p---di~- 311 (465)
++ . +...|++|.++++.|.+.| |++|.++|++|+++|++||+|+ +|..|+ .+..+++|+.+ ||+
T Consensus 163 ~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~g~~~~~vdi~~ 237 (388)
T COG0156 163 EEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHFGLEPEEVDIIV 237 (388)
T ss_pred HhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHhCCCCccceEEE
Confidence 73 1 3689999999999999988 9999999999999999999997 444443 22456667653 333
Q ss_pred -EecccCCC-ccceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHH
Q 012368 312 -TLAKPLAG-GLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 312 -t~sK~lg~-G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
||||++|+ | |++.+++.+++.+.... ...+-+.+|..++++.++|+.+++ ++..++++++..+++..+...
T Consensus 238 gTlsKAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~- 313 (388)
T COG0156 238 GTLGKALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL- 313 (388)
T ss_pred EEchhhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-
Confidence 89999984 4 88999999999886543 333445678888899999999864 678888999999888554442
Q ss_pred HcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 387 ARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.++ ..+....++.+.+. ..+.++...|+++||++.+..+ ...+|++++..||++||+.+++.|.++
T Consensus 314 -~~~---~~~s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 314 -GLV---LLPSESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred -CCc---cCCCCCCeeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 221 12333444555552 3466788899999999875421 256999999999999999999998764
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-31 Score=261.05 Aligned_cols=336 Identities=16% Similarity=0.079 Sum_probs=243.8
Q ss_pred CCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~ 169 (465)
.++++++|+++.+ ||. +||++++++.+++++++.+.. .+....+.+|+++|+++++.+.+++++||..||.
T Consensus 100 ~~r~~l~FsSndY---LGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~ 176 (476)
T PLN02955 100 RFKKLLLFSGNDY---LGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANM 176 (476)
T ss_pred CCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHH
Confidence 4579999999876 775 899999999999998654321 2344568899999999999999999999999999
Q ss_pred HHHHHHHHHhhhc--CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CC
Q 012368 170 AAIKFARKFQRHS--NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PG 245 (465)
Q Consensus 170 ~al~~a~~~t~~~--~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~ 245 (465)
.++..+....... .+....+++.+|+.+...|.+....+.++... ....+..++|||+++|+++++ ..
T Consensus 177 ~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~--------~~a~~~~f~HND~~~Le~~L~~~~~ 248 (476)
T PLN02955 177 AAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQ--------GNVEVFVYRHCDMYHLNSLLSSCKM 248 (476)
T ss_pred HHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhcccc--------CCceEEEeCCCCHHHHHHHHHhCCC
Confidence 9998763111000 00000124567888999999887766554210 012355678999999999996 33
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--cccccccCCcccE----EEecccCCC
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHYGIFPDI----MTLAKPLAG 319 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~~~~~~pdi----~t~sK~lg~ 319 (465)
+.++|++|+++++.|.+.| +++|.++|++||++||+||+|+. |..|. .+..+++++.+|+ .||||++|.
T Consensus 249 ~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~-Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~ 323 (476)
T PLN02955 249 KRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGT-FVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC 323 (476)
T ss_pred CceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccC-ceecCCCCcHHHHhCCCCCCcEEEEeCccchhc
Confidence 5689999999999999887 99999999999999999999973 34443 3356677776655 589999973
Q ss_pred ccceeeEEeCHHHHhhccCCCCcCCC--CChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 320 GLPIGAALVTEKVASAINYGDHGSTF--AGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~~~~t~--~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
+.|++++++++++.+........| +.+|...++++++++.+.. +...++++++.+++++.+ .++.
T Consensus 324 --~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~~-----G~~~----- 391 (476)
T PLN02955 324 --HGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKALS-----GVDI----- 391 (476)
T ss_pred --cCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-----CCCC-----
Confidence 447799999998888643322223 3456667778899988744 456677777777776521 2221
Q ss_pred ccceEEEEEec--CChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 397 GLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 397 ~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
...++.+.+. ..+..+.+.|+++||++.+... ...+||+++..||++||+.++++|.++....
T Consensus 392 -~sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~ 462 (476)
T PLN02955 392 -SSPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFD 462 (476)
T ss_pred -CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhh
Confidence 1344555553 2345689999999999875422 2469999999999999999999999887654
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-30 Score=253.18 Aligned_cols=330 Identities=19% Similarity=0.185 Sum_probs=233.1
Q ss_pred EeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHHhhcCCCeE
Q 012368 85 ASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRV 158 (465)
Q Consensus 85 ~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~v 158 (465)
.++.|.++. .+|++||||.++ .++|| +||++++++.+++++...... .+..+...++++.++++++.+..
T Consensus 4 ~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~ 79 (360)
T TIGR00858 4 DRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAA 79 (360)
T ss_pred ccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCE
Confidence 478899997 799999999997 36896 889999999999876432111 12235578899999998885555
Q ss_pred EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHH
Q 012368 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT 238 (465)
Q Consensus 159 ~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 238 (465)
+++++|++++..+++.+. + +++.|++.+++|....... ...+ ..+..++..|++++
T Consensus 80 i~~~~G~~~~~~~l~~~~---~--------~gd~v~~~~~~~~~~~~~~-~~~g------------~~~~~~~~~d~~~l 135 (360)
T TIGR00858 80 LLFSSGYLANVGVISALV---G--------KGDLILSDALNHASLIDGC-RLSG------------ARVRRYRHNDVEHL 135 (360)
T ss_pred EEECchHHHHHHHHHHhC---C--------CCCEEEEEccccHHHHHHH-HhcC------------CceEEecCCCHHHH
Confidence 566667888887776543 1 5788988888775544322 2111 22334455689999
Q ss_pred HhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--cccccccCCccc----
Q 012368 239 RKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHYGIFPD---- 309 (465)
Q Consensus 239 e~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~~~~~~pd---- 309 (465)
++.++. .++++|+++++++.+|...+ +++|.++|++||++||+||+|+. |..+. ......+++.++
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~i 210 (360)
T TIGR00858 136 ERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHGT-GVLGEDGRGTLEHFGLKPEPVDI 210 (360)
T ss_pred HHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECcccc-cCcCCCCCchHHhcCCCccCCcE
Confidence 998863 24688888888877776655 89999999999999999999973 33221 111233344333
Q ss_pred -EEEecccCCCccceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHH
Q 012368 310 -IMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 310 -i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~ 385 (465)
+.++||++++ +.||+++++++++.+.... +..+.+.++..++++.++++.+.. +...++++++.+++.+.|+++
T Consensus 211 ~i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 288 (360)
T TIGR00858 211 QVGTLSKALGS--YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL 288 (360)
T ss_pred EEEechhhhhc--cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 5689999976 3389999999888775322 222334567777888888886643 356677777888887777663
Q ss_pred HHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecC------CCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 386 LARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 386 ~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+. ...+..+.++++.++. +..++.+.|.++||++.+.. .++++|++++..++++|+++++++|+
T Consensus 289 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 289 ----GF-TLMPSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred ----CC-ccCCCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 31 1223457788888742 35689999999999997531 12589999999999999999998873
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=253.31 Aligned_cols=329 Identities=18% Similarity=0.200 Sum_probs=232.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc----CCC-CCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS----NMY-YSIPQIELAKRLVACSFADRVFFSNTGTEANEA 170 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~----~~~-~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~ 170 (465)
+|+++++|.++.+ ++|| +||+|++|+.+++++..... ..+ ..+...+|+++|+++++.+..++++||++|+..
T Consensus 44 ~~~~~~~~~sn~y-l~l~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~ 121 (410)
T PRK13392 44 GPRRVTIWCSNDY-LGMG-QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDA 121 (410)
T ss_pred CCceEEEEECCCc-cCCC-CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHH
Confidence 5789999999765 2344 78999999999998754321 112 234588999999999986677777889999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---CCCe
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGKT 247 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~ 247 (465)
++..+.... +++ +|+.+..+|+.....+...+. .+..++++|.+.+++.++ .+++
T Consensus 122 ~i~~l~~~~---------~g~-~vi~~~~~h~s~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~~~~~~~t 179 (410)
T PRK13392 122 ALSTLGKLL---------PGC-VILSDALNHASMIEGIRRSGA------------EKQVFRHNDLADLEEQLASVDPDRP 179 (410)
T ss_pred HHHHHhcCC---------CCC-EEEEehhhhHHHHHHHHHcCC------------eEEEEeCCCHHHHHHHHHhccCCCC
Confidence 998553211 344 555666788776544333221 223345677777777765 2367
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCccccccccCC--cccEE--EecccCCCcc
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI--FPDIM--TLAKPLAGGL 321 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~g~~~~~~~~~~--~pdi~--t~sK~lg~G~ 321 (465)
++|+++++++++|.+.+ +++|.++|++||++||+||+|+ | +|..|.+. ....++ .+|++ ||||++|+
T Consensus 180 ~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~-- 252 (410)
T PRK13392 180 KLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC-- 252 (410)
T ss_pred EEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc--
Confidence 88999998888888776 9999999999999999999998 4 35555433 233343 35666 89999974
Q ss_pred ceeeEEeCHHHHhhccCCCC--cCCCCChHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc
Q 012368 322 PIGAALVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKISNP-AFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~--~~t~~~~~~~~~aa~a~L~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 398 (465)
+.||+++++++++.+..... ..+.+.+|+.++++.++|+.+... ...++++++.+++++.|+++ .++ ..++.
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~~ 327 (410)
T PRK13392 253 LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN--GIP---VMPSP 327 (410)
T ss_pred ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCC---CCCCC
Confidence 22888889999887654321 234456778899999999876542 34455677777777777653 222 22445
Q ss_pred ceEEEEEecC--ChHHHHHHHH-HCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 399 GLIIGIEFDV--SATPVVDACR-DSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 399 g~~~~i~~~~--~~~~~~~~l~-~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+.++.+.++. ...++.+.|+ ++||++.+... ..++|+++++.+|++|+++++++|+++++++
T Consensus 328 ~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 328 SHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 6666565532 3457888887 67999986421 2589999999999999999999999987754
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=247.60 Aligned_cols=324 Identities=17% Similarity=0.171 Sum_probs=214.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH----HHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP----QIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~----~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
..+|+..|.. +++ .+|.+++++.+++.........|+... ++.+++++.+.++ .++|++|+|+++++..
T Consensus 27 ~~i~l~~~~~--~~~-~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~ 103 (368)
T PRK03317 27 VPVRLNTNEN--PYP-PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ 103 (368)
T ss_pred ceeEecCCCC--CCC-CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence 4688887754 555 788999999988754211112333322 4444555444333 6899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe-EE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT-AA 249 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-a~ 249 (465)
+++++.. +++.|++.+|+|+++...+...+.... . .+...+.. -|+++++++++.+++ .+
T Consensus 104 ~~~~~~~-----------~gd~v~v~~P~y~~~~~~~~~~g~~~~-~---~~~~~~~~----~d~~~l~~~~~~~~~~~i 164 (368)
T PRK03317 104 LLQAFGG-----------PGRTALGFVPSYSMHPIIARGTHTEWV-E---GPRAADFT----LDVDAAVAAIAEHRPDVV 164 (368)
T ss_pred HHHHhcC-----------CCCEEEEeCCChHHHHHHHHhcCCeeE-E---cccCCCCC----CCHHHHHHHHhccCCCEE
Confidence 9987652 688999999999887754433221111 1 01111111 278999999863333 45
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE---EecccCC-Cccceee
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM---TLAKPLA-GGLPIGA 325 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~ 325 (465)
++++|.|++| .. ++.+ ++.++|+.++++||+||+|.+|++.|........+..|+++ ||||.+| +|+|+||
T Consensus 165 ~l~~p~NPtG-~~-~~~~---~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~ 239 (368)
T PRK03317 165 FLTSPNNPTG-TA-LPLD---DVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGY 239 (368)
T ss_pred EEeCCCCCCC-CC-CCHH---HHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhh
Confidence 5666655554 43 3544 45555555589999999999987665433333334445665 8999998 6999999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEE-
Q 012368 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI- 404 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i- 404 (465)
+++++++++.+.... .+++.++++++++.++|+.. +.+.++.++. ...++.+.+.+.+++. ....+.|.|+.+
T Consensus 240 ~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~--~~~~~~~~~~-~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~ 313 (368)
T PRK03317 240 LAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHA--DELLASVAAL-RAERDRVVAWLRELGL-RVAPSDANFVLFG 313 (368)
T ss_pred hhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCH--HHHHHHHHHH-HHHHHHHHHHHHHCCC-EeCCCCCcEEEEe
Confidence 999999999886432 46788999999999998743 2333333322 2233444444444442 333445665554
Q ss_pred EecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 405 EFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 405 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+ .+..++.+.|+++||++.+.+..+++||+++ +.+++++++++|+++++.
T Consensus 314 ~~-~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~---~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 314 RF-ADRHAVWQGLLDRGVLIRDVGIPGWLRVTIG---TPEENDAFLAALAEVLAT 364 (368)
T ss_pred cc-CCHHHHHHHHHHCCEEEEeCCCCCeEEEecC---CHHHHHHHHHHHHHHHHH
Confidence 33 3567899999999999988765578999854 678999999999988753
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=245.45 Aligned_cols=342 Identities=13% Similarity=0.060 Sum_probs=229.0
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANE 169 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~eA~~ 169 (465)
+..+||..+... +++ .+|.+.+++.+.+.... +....+..+.++++++++++.++ + ++|++|+|+++|+.
T Consensus 39 ~~~i~l~~g~~~-~~~-p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 39 GRPVDFSHGDVD-AHE-PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCceecCCcCCC-CCC-CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 456677766543 333 66788898888776421 11122233457788888887765 4 78999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
.+++... +++|.|++.+|+|+++...+...+.... ..+.........+ -.|+++|+++++++...+
T Consensus 117 ~~~~~l~-----------~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~-~v~~~~~~~~~~~--~~d~~~l~~~~~~~~k~v 182 (405)
T PRK06207 117 LAVAATV-----------ARGDKVAIVQPDYFANRKLVEFFEGEMV-PVQLDYLSADKRA--GLDLDQLEEAFKAGVRVF 182 (405)
T ss_pred HHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHcCCEEE-EEeccccCcccCC--CcCHHHHHHhhhhcCeEE
Confidence 9988665 2689999999999887754443332211 1000000000000 027899999987544556
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccc----cCCcccEEEecccCC-Cccce
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH----YGIFPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~----~~~~pdi~t~sK~lg-~G~~i 323 (465)
++++|.|++| .+.+.+.+++|.++|++||++||+||+|..|...|... .... .+...-+.+|||.++ .|+|+
T Consensus 183 ~l~~P~NPTG--~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRi 260 (405)
T PRK06207 183 LFSNPNNPAG--VVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRL 260 (405)
T ss_pred EECCCCCCCC--cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccce
Confidence 7888876666 34588999999999999999999999999875444311 1111 122233447999999 79999
Q ss_pred eeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEE
Q 012368 324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLII 402 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~ 402 (465)
||+++++++++.+.........+.+.+++.++.++|+. .+.++++..+.....++.+.+.+..++.+... +..|.|+
T Consensus 261 G~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl 338 (405)
T PRK06207 261 GVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSE--PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYL 338 (405)
T ss_pred EEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEE
Confidence 99999999988886433334455677888888888862 12333333333333445555555555433333 3347888
Q ss_pred EEEec---CChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 403 GIEFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 403 ~i~~~---~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|++++ .+..++++.|+ ++||.+.|+. .++++||+++. +++++++++++|.+++++++
T Consensus 339 ~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~--~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 339 FPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ--DHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred EEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhh
Confidence 99884 25678999987 6899999863 14689997763 78999999999999998764
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=244.62 Aligned_cols=336 Identities=15% Similarity=0.142 Sum_probs=232.6
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
+..+|++..+.. .++ .+|.+.+++.+++..... ..|+. ....++++++++.++ .++|++++|+++|+..+++
T Consensus 27 ~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~ 101 (380)
T PRK06225 27 DKEMIWMGQNTN--HLG-PHEEVREAMIRCIEEGEY--CKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMR 101 (380)
T ss_pred cCCeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCC--CCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHH
Confidence 456788887643 454 689999999998865321 22322 236788899998887 6789999999999999998
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEeeCCCHHHHHhhcCCCCeEEEEE
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFVEYGNIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~a~vi~ 252 (465)
.+.. +++.|++.+|+|+.+...+...+.... . .+.. .+..+ .-|++++++.+.++..+++++
T Consensus 102 ~~~~-----------~gd~vl~~~p~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~--~~d~~~l~~~~~~~~~~v~l~ 164 (380)
T PRK06225 102 AFLS-----------PGDNAVTPDPGYLIIDNFASRFGAEVI-E---VPIYSEECNY--KLTPELVKENMDENTRLIYLI 164 (380)
T ss_pred HhcC-----------CCCEEEEcCCCCcchHHHHHHhCceEE-e---eccccccCCc--cCCHHHHHhhcCCCceEEEEe
Confidence 7641 578899999999865432222222111 1 0110 00000 127899999987544445567
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccc-ccCCcccEEEecccCC-CccceeeEEeCH
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE-HYGIFPDIMTLAKPLA-GGLPIGAALVTE 330 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~-~~~~~pdi~t~sK~lg-~G~~iG~v~~~~ 330 (465)
+|.|++| . .++.+.+++|.++|++||+++|+||+|.+|.. +...... ..+...++.+|||.+| .|+|+||+++++
T Consensus 165 ~p~NptG-~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~ 241 (380)
T PRK06225 165 DPLNPLG-S-SYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATP 241 (380)
T ss_pred CCCCCCC-c-CCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEeechhhcCCccceeEEEecCH
Confidence 7766654 3 45888999999999999999999999987632 2211111 1123345678999998 599999999999
Q ss_pred HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC--ceeeeccceEEEEEec-
Q 012368 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH--VKDVRGLGLIIGIEFD- 407 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~g~~~~i~~~- 407 (465)
++++.+... ...+++.|.+++.++.++|+. ..++.+++++..+..++.+.+.+++++. ....++.|.++++.+.
T Consensus 242 ~l~~~~~~~-~~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 318 (380)
T PRK06225 242 DLIEVVKSI-VINDLGTNVIAQEAAIAGLKV--KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISE 318 (380)
T ss_pred HHHHHHHHH-HhcccCCCHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccc
Confidence 999887643 234677888999888888864 2455666666555555556555555432 2223456888888873
Q ss_pred --CChHHHHHHHHHCCceEeecC------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 408 --VSATPVVDACRDSGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 408 --~~~~~~~~~l~~~Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+..++.+.|.++||.+.++. ..+++|++++ .+++++++++++|++++.+++.
T Consensus 319 ~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~--~~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 319 AGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFS--IPREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred ccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeC--CCHHHHHHHHHHHHHHHHHhhc
Confidence 367789999999999998752 1257888754 5789999999999999988764
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=248.03 Aligned_cols=324 Identities=13% Similarity=0.136 Sum_probs=234.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
+++..+|+..|.. ++| .+|.+++++.+.+... ..|+.....+|.+.|+++++ +++|++|+|++|++..+++
T Consensus 27 ~~~~~i~l~~nen--~~~-~~~~v~~a~~~~~~~~----~~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 27 GDHSFVKLASNEN--PFG-CSPRVLDELQKSWLDH----ALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISR 99 (366)
T ss_pred CCCceEEeCCCCC--CCC-CCHHHHHHHHHHHHhc----CcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence 3467899988754 677 6788999998876543 22444446678888888886 7899999999999999988
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
++.. +++.|++.+|+|.++...+...+.... . .+...+ ..|+++++++++++...+++++
T Consensus 100 ~l~~-----------~gd~vlv~~P~y~~~~~~~~~~g~~v~-~---v~~~~~-----~~d~~~l~~~~~~~~~~v~i~~ 159 (366)
T PRK01533 100 AVLK-----------AGDNIVTAGATFPQYRHHAIIEGCEVK-E---VALNNG-----VYDLDEISSVVDNDTKIVWICN 159 (366)
T ss_pred HhcC-----------CCCEEEEcCCcHHHHHHHHHHcCCEEE-E---eecCCC-----CcCHHHHHHHhCcCCcEEEEeC
Confidence 7652 688999999999888765443332111 1 111111 1278999998875555666777
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccc---cccCCcccEEEecccCC-CccceeeEEe
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAH---EHYGIFPDIMTLAKPLA-GGLPIGAALV 328 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~---~~~~~~pdi~t~sK~lg-~G~~iG~v~~ 328 (465)
|+|++| ...+.+.+++|.++|++++ ++|+||+|.+|...+. .... +..+...-+.+|||.+| .|+|+||+++
T Consensus 160 P~NPTG--~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~ 236 (366)
T PRK01533 160 PNNPTG--TYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVG 236 (366)
T ss_pred CCCCCC--CCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhC
Confidence 877665 3458888999999998876 6777999987643221 1111 11222233447999999 6999999999
Q ss_pred CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC
Q 012368 329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 329 ~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~ 408 (465)
++++++.+... ..+++.|.+++.++.++|+ +.++.+++++.....++.+.+.+..++ +...++.|+|+++.++
T Consensus 237 ~~~~~~~l~~~--~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g-~~~~~~~~nf~~~~~~- 309 (366)
T PRK01533 237 HEELIEKLNVV--RLPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENE-IPFYQSQTNFIFLPVE- 309 (366)
T ss_pred CHHHHHHHHHh--cCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCcCcEEEEeCC-
Confidence 99999988643 2467889999999999985 455666666655555666666665554 3344567999999874
Q ss_pred ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 409 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+..++.+.|+++||.+++. ++++||+ ..+.+++++++++|+++++..+
T Consensus 310 ~~~~~~~~l~~~GI~Vr~~--~~~iRis---~~~~~~~~~l~~al~~~~~~~~ 357 (366)
T PRK01533 310 NGGEIYEACAHAGFIIRPF--PNGVRIT---VGTREQNEGVISVLQQHFENKK 357 (366)
T ss_pred CHHHHHHHHHHCCcEEccC--CCceEEe---CCCHHHHHHHHHHHHHHHHhcc
Confidence 5678999999999999985 3779998 4588999999999999987654
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=244.69 Aligned_cols=319 Identities=18% Similarity=0.172 Sum_probs=222.6
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~ 176 (465)
+++||.+|.+ ++| .+|.+.+++.+.++...+ ++.....++++.++++++ .++|++|+|+++++..+++...
T Consensus 30 ~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~~~----~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~ 102 (359)
T PRK03158 30 KIVKLASNEN--PYG-PSPKVKEAIAAHLDELAL----YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL 102 (359)
T ss_pred ceEEecCCCC--CCC-CCHHHHHHHHHHHHHhhc----CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh
Confidence 6899998865 467 588999999988765322 333446678888888776 6789999999999998887654
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccC
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQ 256 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~ 256 (465)
. +++.|++.+|+|+++...+...+.... . .+.. +. ..|++++++.++++...+++++|.|
T Consensus 103 ~-----------~gd~v~~~~p~y~~~~~~~~~~g~~~~-~---~~~~-~~----~~d~~~l~~~~~~~~~~v~i~~p~N 162 (359)
T PRK03158 103 N-----------PGTNTVMAEPTFSQYRHNAIIEGAEVR-E---VPLK-DG----GHDLEAMLKAIDEQTKIVWICNPNN 162 (359)
T ss_pred C-----------CCCEEEEcCCCHHHHHHHHHHcCCeEE-E---EecC-CC----CcCHHHHHHhcCCCCCEEEEeCCCC
Confidence 1 688999999999987644333221111 0 1111 00 1278999888875444455566655
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-ccc---ccccCCcccEEEecccCC-CccceeeEEeCHH
Q 012368 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWA---HEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~---~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~ 331 (465)
++ |.+ ++.+.+.++.+.|+ +|+++|+||+|.+|...+. ... .+.++...-+.||||.+| .|+|+||++++++
T Consensus 163 Pt-G~~-~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~ 239 (359)
T PRK03158 163 PT-GTY-VNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEE 239 (359)
T ss_pred CC-CCC-CCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHH
Confidence 54 443 46666777776664 6999999999987643221 111 122232333458999999 6999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+... ..+++.|++++.++.++|+ +.++.+++++..+..++.+.+.+.+++ +...++.|.++++.+..+..
T Consensus 240 ~~~~~~~~--~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~g~~i~~~~~~~~~ 313 (359)
T PRK03158 240 LIEKLNIA--RPPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYG-LFYYPSQTNFIFVDTGRDAN 313 (359)
T ss_pred HHHHHHHh--cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeCCCcCcEEEEECCCCHH
Confidence 99888643 2357889999999999886 345555555555555566666555554 33456678899988755678
Q ss_pred HHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
++++.|+++||.+.++. .++++||+++ +.+++++++++|+++
T Consensus 314 ~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~ 358 (359)
T PRK03158 314 ELFEALLKKGYIVRSGAALGFPTGVRITIG---LKEQNDKIIELLKEL 358 (359)
T ss_pred HHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHh
Confidence 89999999999999862 2478999744 889999999999875
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=239.37 Aligned_cols=320 Identities=20% Similarity=0.214 Sum_probs=243.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a 175 (465)
..+|+.+| -+++| .+|.+++++.+.++.+ +.|+++...++.+.+++.++ .+.|+.+||.+|.+...+++.
T Consensus 23 ~~i~LssN--enP~g-p~~~~~~~~~~~~~~~----~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~ 95 (356)
T COG0079 23 GIIKLSSN--ENPYG-PPPKVIEAIRAALDKL----NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF 95 (356)
T ss_pred cceeecCC--CCCCC-CCHHHHHHHHHHHHhh----ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh
Confidence 68999988 45788 5689999998887743 45777778899999999887 579999999999999999987
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEccc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI 255 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~ 255 (465)
+. ++++|++..|+|.-+...+...+...... +... .. .|++.+.+.+.++...+++++|+
T Consensus 96 ~~-----------~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v----~~~~-~~----~d~~~~~~~~~~~~~lv~i~nPN 155 (356)
T COG0079 96 VE-----------PGDTVLIPEPTFSMYEIAAQLAGAEVVKV----PLKE-FR----LDLDAILAAIRDKTKLVFLCNPN 155 (356)
T ss_pred hc-----------CCCEEEEcCCChHHHHHHHHhcCCeEEEe----cccc-cc----cCHHHHHHhhhcCCCEEEEeCCC
Confidence 73 67899999999977776555444222111 1111 11 37888888887645678888999
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcc---cEEEecccCC-CccceeeEEeCHH
Q 012368 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP---DIMTLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~p---di~t~sK~lg-~G~~iG~v~~~~~ 331 (465)
||+|..+ +.+.++++.+.|.+ +++||+||+|.+|.. . .......-.+ -+-||||++| +|+|+||++++++
T Consensus 156 NPTG~~~--~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~--~-~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~ 229 (356)
T COG0079 156 NPTGTLL--PREELRALLEALPE-GGLVVIDEAYIEFSP--E-SSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPE 229 (356)
T ss_pred CCCCCCC--CHHHHHHHHHhCCC-CcEEEEeCchhhcCC--c-hhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHH
Confidence 9988544 77889999999888 999999999999964 2 1122111122 2348999999 6999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC-Ch
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-SA 410 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-~~ 410 (465)
+++.+. .....|+.|.++++++.++|+ +.++.++..+....-+++|.+.+..++.....++.++|+.+++.. .+
T Consensus 230 ~i~~l~--~vr~p~~v~~~a~~aa~aal~---~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~~~~~~~ 304 (356)
T COG0079 230 LIAALN--KVRPPFNVSSPALAAAIAALR---DADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVRVPDAEA 304 (356)
T ss_pred HHHHHH--HhcCCCCCCHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEECCCccH
Confidence 999997 455788999999999999997 346666666666666677777777766332566779999998832 25
Q ss_pred HHHHHHHHHCCceEeecCC----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 411 TPVVDACRDSGLLVLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 411 ~~~~~~l~~~Gv~v~~~~~----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..+.+.|+++||+++.+.. .+++|++ ..|++|.++++++|.++++.
T Consensus 305 ~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 305 AALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLAALREVLKG 354 (356)
T ss_pred HHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHHHHHHHHhc
Confidence 5799999999999998742 3689998 55889999999999988754
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-28 Score=225.80 Aligned_cols=348 Identities=15% Similarity=0.143 Sum_probs=244.6
Q ss_pred eeccEEEeCCC--CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC----CCeEEe
Q 012368 87 GKGCKLYDAEG--REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADRVFF 160 (465)
Q Consensus 87 ~~G~~~~d~dG--~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~v~~ 160 (465)
+..+.-||..+ ..+|-+.-.. +-|. .+|+|++|+.+.++.+.+++.....+...++.++.+++++ .+.|+|
T Consensus 12 ~t~s~KWd~~~g~~DvlPmWVAD--MDf~-~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~ 88 (388)
T COG1168 12 GTNSLKWDAHPGNEDVLPMWVAD--MDFP-TPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVF 88 (388)
T ss_pred CCCceeccccCCCCCcceeeeec--ccCC-CCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEE
Confidence 33445565554 3444433322 1233 7899999999999987676664444568899999999886 789999
Q ss_pred cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHh
Q 012368 161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240 (465)
Q Consensus 161 ~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 240 (465)
+++..-++..+++.. |. ++|.|++..|.||.+... ....+......++.-....... |+++||+
T Consensus 89 ~p~VVpgi~~~I~~~---T~--------~gd~Vvi~tPvY~PF~~~-i~~n~R~~i~~pL~~~~~~y~i----D~~~LE~ 152 (388)
T COG1168 89 VPGVVPGISLAIRAL---TK--------PGDGVVIQTPVYPPFYNA-IKLNGRKVIENPLVEDDGRYEI----DFDALEK 152 (388)
T ss_pred cCcchHhHHHHHHHh---Cc--------CCCeeEecCCCchHHHHH-HhhcCcEEEeccccccCCcEEe----cHHHHHH
Confidence 999999999999954 43 799999999999887643 3333333333222211111222 8999999
Q ss_pred hcCCCC-eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cccccccc-----CCcccEEEe
Q 012368 241 LIQPGK-TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-YLWAHEHY-----GIFPDIMTL 313 (465)
Q Consensus 241 ~l~~~~-~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g-~~~~~~~~-----~~~pdi~t~ 313 (465)
.+.... ...|+|+|.||.| .++++++|++|.+||.+||+++|+||+|.++-..| +...+... +...-+++-
T Consensus 153 ~~~~~~vkl~iLCnPHNP~G--rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~sa 230 (388)
T COG1168 153 AFVDERVKLFILCNPHNPTG--RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSA 230 (388)
T ss_pred HHhcCCccEEEEeCCCCCCC--ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeec
Confidence 998544 6778899988877 67899999999999999999999999999986666 22221111 112223345
Q ss_pred cccCC-CccceeeEEeC-HHHHhhccC-CCCcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHc
Q 012368 314 AKPLA-GGLPIGAALVT-EKVASAINY-GDHGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 314 sK~lg-~G~~iG~v~~~-~~i~~~~~~-~~~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
||+++ +|+.+++++.+ +++.+.+.. ....+..+.|.+++.|..++++..+. +++.+.++.+.+++.+.+.+ .
T Consensus 231 SKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~---~ 307 (388)
T COG1168 231 SKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNK---H 307 (388)
T ss_pred cccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---h
Confidence 79998 69999988764 555444432 23344556789999999999996543 56667777777777777766 3
Q ss_pred CCCceeeeccceE-EEEEe---cCChHHHHHHHHH-CCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 389 NPHVKDVRGLGLI-IGIEF---DVSATPVVDACRD-SGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 389 ~~~~~~~~~~g~~-~~i~~---~~~~~~~~~~l~~-~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.|.+....+.|.+ .|+++ ..+..++.+.|++ .+|.+.++. . .+++|+ +++++++-+++++++|..+++
T Consensus 308 ~P~v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~Rl--N~acpr~~L~eal~ri~~al~ 385 (388)
T COG1168 308 LPGVKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRL--NFACPRAILEEALERLKRALK 385 (388)
T ss_pred CCCcEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEE--ecCCCHHHHHHHHHHHHHHHh
Confidence 5666677777876 46777 2455678888885 467776552 1 256777 788999999999999999887
Q ss_pred Hh
Q 012368 459 VL 460 (465)
Q Consensus 459 ~~ 460 (465)
..
T Consensus 386 ~~ 387 (388)
T COG1168 386 KR 387 (388)
T ss_pred cc
Confidence 54
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=243.31 Aligned_cols=335 Identities=12% Similarity=0.032 Sum_probs=221.5
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhccc-c-cCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-V-SNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~a 171 (465)
..|+|..+.+ .++ .++.+.+++.+.+..... + ...+..+.++++++++.+.++ .+ +|++|+|+++|+..+
T Consensus 21 ~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 97 (378)
T PRK07682 21 GVISLGVGEP--DFV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA 97 (378)
T ss_pred CeEEeCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence 3678887765 344 466788888887754211 1 122233446777777766544 33 799999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
++.+. .+++.|++.+|+|+++...+...+.... . .+......+ .-|++++++++.++..++++
T Consensus 98 ~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~~--~~d~~~l~~~~~~~~~~v~~ 160 (378)
T PRK07682 98 MRAII-----------NPGDEVLIVEPSFVSYAPLVTLAGGVPV-P---VATTLENEF--KVQPAQIEAAITAKTKAILL 160 (378)
T ss_pred HHHhC-----------CCCCEEEEeCCCchhhHHHHHHcCCEEE-E---eecCCccCC--CCCHHHHHhhcCcccEEEEE
Confidence 88664 2689999999999877654433332211 1 011100000 12789999998754445556
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-cccC---CcccEEEecccCC-CccceeeE
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYG---IFPDIMTLAKPLA-GGLPIGAA 326 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~~~~---~~pdi~t~sK~lg-~G~~iG~v 326 (465)
++|.|++|. +++.+.+++|.++|++|++++|+||+|.+|.+.+..... ...+ ....+.+|||.++ .|+|+||+
T Consensus 161 ~~p~NPtG~--~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~ 238 (378)
T PRK07682 161 CSPNNPTGA--VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFI 238 (378)
T ss_pred ECCCCCcCc--CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhh
Confidence 777666553 558899999999999999999999999988654432111 1112 2233557999999 69999999
Q ss_pred EeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEE
Q 012368 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIE 405 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~ 405 (465)
++++++++.+.......+++.+++++.++.++|+.. +...+++++..+..++.+.+.+.+++. ....+. |.++|+.
T Consensus 239 ~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~p~g~~~~~~~ 315 (378)
T PRK07682 239 AAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAG--NDDVIRMRDSYRKRRNFFVTSFNEIGL-TCHVPGGAFYAFPS 315 (378)
T ss_pred hcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCCeeEEEEEe
Confidence 999999988864333445677889999998888632 223344444333334444444444432 222333 4556665
Q ss_pred ec---CChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 406 FD---VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 406 ~~---~~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+. .+..++++.|+ ++||.+.|+. . .+++||++. .+++++++++++|+++++++
T Consensus 316 ~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 316 ISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred ccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHhhc
Confidence 52 35678998886 6899998863 1 378999765 47899999999999998764
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-28 Score=242.96 Aligned_cols=333 Identities=16% Similarity=0.087 Sum_probs=224.1
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-ccc-CCCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS-NMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANE 169 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~eA~~ 169 (465)
|.+++||..+.+. ++ .++.+++++.+.+.... +.+ ..+....++++++++.+.++ + ++|++|+|+++|+.
T Consensus 31 ~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~ 107 (399)
T PRK07681 31 GHKMIDLSIGNPD--MP-PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLV 107 (399)
T ss_pred CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHH
Confidence 5578899888653 44 56788899888765422 111 12223346667777765543 5 68999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
.+++++.. +++.|++.+|+|.++...+...+...... +...+..+. .|++++++.+.++...+
T Consensus 108 ~~~~~~~~-----------~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v----~~~~~~~~~--~d~~~l~~~~~~~~k~v 170 (399)
T PRK07681 108 HLPMVYAN-----------PGDIILVPDPGYTAYETGIQMAGATSYYM----PLKKENDFL--PDLELIPEEIADKAKMM 170 (399)
T ss_pred HHHHHhCC-----------CCCEEEECCCCccchHHHHHhcCCEEEEE----ecCCCCCCc--CCHHHHHHhccccceEE
Confidence 98876542 68999999999988876555444322111 111111111 27899988886433444
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cc-ccc---cCCcccEEEecccCC-Cccce
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WA-HEH---YGIFPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~-~~~---~~~~pdi~t~sK~lg-~G~~i 323 (465)
++++|.|++| .+.+++.+++|.++|++||++||+||+|.+|-..+.. .. ... .+....+.+|||.++ .|+|+
T Consensus 171 ~l~~P~NPTG--~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi 248 (399)
T PRK07681 171 ILNFPGNPVP--AMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRI 248 (399)
T ss_pred EEeCCCCCcC--cCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcccee
Confidence 4555777665 3458899999999999999999999999987433321 11 111 122334558999998 69999
Q ss_pred eeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEE
Q 012368 324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~ 403 (465)
||+++++++++.+........++.+.+++.++.++|+.. ..+.++.++..+..++.+.+.+..++.....+..|.++|
T Consensus 249 G~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f~~ 326 (399)
T PRK07681 249 GYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNG--AAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVW 326 (399)
T ss_pred EEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeEEE
Confidence 999999999988865444456678888999988888632 234444444444444445555555543211234578888
Q ss_pred EEec--CChHHHHHHHHH-CCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 404 IEFD--VSATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 404 i~~~--~~~~~~~~~l~~-~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+.++ .+..++.+.|++ +||.+.|+.. .+++||++. .+++++++++++|++
T Consensus 327 ~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 327 AEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN 384 (399)
T ss_pred EECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 8874 356789999887 8999988631 368999765 578999999999987
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=243.39 Aligned_cols=340 Identities=14% Similarity=0.132 Sum_probs=228.8
Q ss_pred EEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHH
Q 012368 92 LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEAN 168 (465)
Q Consensus 92 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~ 168 (465)
-++..|..++++..+-.. +. .++.+ +++.+++......+ .+.....+|++.++++++ +++|++|+|+++|+
T Consensus 20 ~~~~~~~~~~~~~~~e~~--~~-~~~~~-~~~~~~~~~~~~~Y--~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al 93 (373)
T PRK07324 20 TYDIAESCIDSLTLEELL--AL-AGKNP-EAFYQELGQKKLTY--GWIEGSPEFKEAVASLYQNVKPENILQTNGATGAN 93 (373)
T ss_pred ccccccCCCCCCcHHHHH--hc-cCcch-HHHHHHHhcCCccC--CCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHH
Confidence 355566667777665442 22 45567 88888776532211 122224567777777653 68999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
..++..+. +++++|++..|+|..+...+...+..... .+...+..+. .|++++++++.++...
T Consensus 94 ~~~~~~l~-----------~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~----v~~~~~~~~~--~d~~~l~~~~~~~~kl 156 (373)
T PRK07324 94 FLVLYALV-----------EPGDHVISVYPTYQQLYDIPESLGAEVDY----WQLKEENGWL--PDLDELRRLVRPNTKL 156 (373)
T ss_pred HHHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHcCCEEEE----EecccccCCC--CCHHHHHHhCCCCCcE
Confidence 99988664 26899999999998775443333322111 1111111111 2789999988754444
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-CccceeeE
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAA 326 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v 326 (465)
+++..|.|++| .+.+++.+++|.++|++||+++|+||+|.++...+.... ....+....+.+|||.++ .|+|+||+
T Consensus 157 i~i~~p~NPtG--~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i 234 (373)
T PRK07324 157 ICINNANNPTG--ALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWI 234 (373)
T ss_pred EEEeCCCCCCC--CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEE
Confidence 44556665554 345889999999999999999999999998755432111 122222233458999999 59999999
Q ss_pred EeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc-eEEEEE
Q 012368 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG-LIIGIE 405 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g-~~~~i~ 405 (465)
++++++++.+.......+++.+++++.++..+|+. .+.+.++.++..+..++.+.+.+..++.+..+.+.| .++++.
T Consensus 235 ~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~--~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~ 312 (373)
T PRK07324 235 AANEEVIDILRKYRDYTMICAGVFDDMLASLALEH--RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVK 312 (373)
T ss_pred ecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEE
Confidence 99999998887655556778888999888888762 244555555555555566666666665544444444 455565
Q ss_pred ec--CChHHHHHHHH-HCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 406 FD--VSATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 406 ~~--~~~~~~~~~l~-~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++ .+..+++++|+ ++||.+.|+.. .+++||++. .+++.+++++++|.+++++.
T Consensus 313 ~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~--~~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 313 LDVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYC--CDTETLKKGLKKLSEFLREF 371 (373)
T ss_pred eCCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence 53 46778999876 67999998742 468898754 57899999999999998764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=243.85 Aligned_cols=328 Identities=17% Similarity=0.167 Sum_probs=229.9
Q ss_pred CCCCEEEecccCcccccCCC--CCHHHHHHHHHHHhhcccc--cC---CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHH
Q 012368 95 AEGREYLDLSSGIAVNALGH--GDADWIKAVVDQANVLTHV--SN---MYYSIPQIELAKRLVACSFADRVFFSNTGTEA 167 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA 167 (465)
.+++++|+|+|+.+ ||. +++.+.+++.+++++.+.. +. .+......+++++++++++.+..+++++|+.+
T Consensus 97 ~~~~~~~n~~s~~Y---Lgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~a 173 (489)
T PLN02483 97 TKTRRCLNLGSYNY---LGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYAT 173 (489)
T ss_pred CCCceEEEeecCCc---cCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHH
Confidence 46789999999766 665 4677888888888775432 12 23466799999999999996656666778888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC---
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--- 244 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--- 244 (465)
+..++.... .+++.|++.+++|++....+ ... ...+..++++|+++++++++.
T Consensus 174 n~~~i~al~-----------~~Gd~Vi~d~~~h~s~~~~~-~~~------------Ga~v~~~~~~d~~~le~~l~~~i~ 229 (489)
T PLN02483 174 NSTIIPALI-----------GKGGLIISDSLNHNSIVNGA-RGS------------GATIRVFQHNTPSHLEEVLREQIA 229 (489)
T ss_pred HHHHHHHhC-----------CCCCEEEEcchhhHHHHHHH-HHc------------CCeEEEEeCCCHHHHHHHHHhhhh
Confidence 887777644 16888998888887654332 211 133455777888888776641
Q ss_pred ---------CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCccccccccCCc---ccE
Q 012368 245 ---------GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGIF---PDI 310 (465)
Q Consensus 245 ---------~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~gr~g~~~~~~~~~~~---pdi 310 (465)
....+|++|++.++.|.+.+ +++|.++|++||++||+||+|+- +|++|.+ ..+++++. .|+
T Consensus 230 ~~~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~~~dI 304 (489)
T PLN02483 230 EGQPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPADVDI 304 (489)
T ss_pred ccccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcccCcE
Confidence 12458889999998888776 99999999999999999999972 3444443 34455543 355
Q ss_pred E--EecccCCCccceeeEEeCHHHHhhccCCCCcCCC--CChHHHHHHHHHHHHHhcC-------chHHHHHHHHHHHHH
Q 012368 311 M--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTF--AGSPLVCNAAIAVLDKISN-------PAFLASVSKKGHYFK 379 (465)
Q Consensus 311 ~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~--~~~~~~~~aa~a~L~~~~~-------~~~~~~~~~~~~~l~ 379 (465)
+ ||||++|+ +.||+++++++++.+.......++ +.+|..++++.++|+.+.. .+..++++++.++++
T Consensus 305 ~~~SfSKs~g~--~GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~ 382 (489)
T PLN02483 305 MMGTFTKSFGS--CGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFR 382 (489)
T ss_pred EEEecchhccc--CceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHH
Confidence 5 89999975 339999999999998754333333 3466667777888876532 134566777777777
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
+.|+++ .+.... ...+.++++.+. ....++.+.|+++||.+.+.+. .+.+||+++..+|+++|+++++
T Consensus 383 ~~L~~~--G~~v~~--~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~ 458 (489)
T PLN02483 383 SELQKM--GFEVLG--DNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALE 458 (489)
T ss_pred HHHHHC--CCcccC--CCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 777664 222111 122334455442 3445799999999999985432 2579999999999999999999
Q ss_pred HHHHHHHHh
Q 012368 452 ILCKTLPVL 460 (465)
Q Consensus 452 ~l~~~l~~~ 460 (465)
+|+++++.+
T Consensus 459 ~L~~~~~~~ 467 (489)
T PLN02483 459 VISEVGDLV 467 (489)
T ss_pred HHHHHHHHh
Confidence 999988764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=240.67 Aligned_cols=323 Identities=16% Similarity=0.164 Sum_probs=228.1
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~ 176 (465)
.++++..|.. .+| .+|.+.+++.+.+..... |+.....+|++.++++++ .++|++++|+++++..+++++.
T Consensus 33 ~~~~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~----Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~ 105 (369)
T PRK08153 33 FRARIGANES--GFG-PSPSVIAAMREAAAEIWK----YGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV 105 (369)
T ss_pred ceeEecCCCC--CCC-CCHHHHHHHHHHHHHhhc----CCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc
Confidence 4678887754 455 678899999887654221 222235678888888886 6799999999999999888654
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe-EEEEEccc
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT-AAVFVEPI 255 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-a~vi~ep~ 255 (465)
. +++.|++.+|+|+++...+...+.... . .++..+ ..|++++++.+...++ .+++++|+
T Consensus 106 ~-----------~gd~vlv~~p~y~~~~~~~~~~g~~~~-~---vp~~~~-----~~~~~~l~~~~~~~~~~~i~l~~P~ 165 (369)
T PRK08153 106 E-----------PGDPVVTSLGAYPTFNYHVAGFGGRLV-T---VPYRDD-----REDLDALLDAARRENAPLVYLANPD 165 (369)
T ss_pred C-----------CCCEEEECCCcchHHHHHHHHcCCeEE-E---eeCCCC-----CCCHHHHHHHhcccCCcEEEEeCCC
Confidence 2 689999999999887644333222111 1 011111 1267888776643334 45566887
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCccc---EEEecccCC-CccceeeEEeCHH
Q 012368 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD---IMTLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pd---i~t~sK~lg-~G~~iG~v~~~~~ 331 (465)
||+| . ..+.+.+++|.++|++ +++||+||+|..|++.|....... ..++ +.||||.+| .|+|+||++++++
T Consensus 166 NPtG-~-~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~ 240 (369)
T PRK08153 166 NPMG-S-WHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGAAPPIDT--DDPNVIRMRTFSKAYGLAGARVGYAIGAPG 240 (369)
T ss_pred CCCC-C-CCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCcccchhhhh--cCCCEEEEecchHhccCcchheeeeecCHH
Confidence 7775 3 4588889999998874 999999999998865543211111 1233 447999998 6999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---C
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---V 408 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~ 408 (465)
+++.+... ..+++.+++++.++.++|+ ++++.+++++..+..++.+.+.+++.+. ...+..|.|++++++ .
T Consensus 241 ~~~~l~~~--~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g~-~~~p~~~~f~~~~~~~~~~ 314 (369)
T PRK08153 241 TIKAFDKV--RNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANGL-TPLPSATNFVAIDCGRDGA 314 (369)
T ss_pred HHHHHHHh--hcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCcCcEEEEECCCCcc
Confidence 99887643 2457789999999999986 4566777777777777777776666653 234566788888773 2
Q ss_pred ChHHHHHHHHHCCceEe-ecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 409 SATPVVDACRDSGLLVL-TAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~-~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+.++.+.|+++||.+. |+.. .+++|+++. ++++++.++++|++++..+++
T Consensus 315 ~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 315 FARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred cHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999995 4321 367899754 789999999999999887654
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=244.84 Aligned_cols=333 Identities=15% Similarity=0.048 Sum_probs=216.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~ 176 (465)
..+||..+.+ .....|.+.+++.+.......+ ...+..+.++.+++++....+ .++|++|+|+++|+..+++++.
T Consensus 86 ~~i~L~~g~p---~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~ 162 (431)
T PRK15481 86 PLHDLAGGNP---DPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL 162 (431)
T ss_pred hhhhhhcCCC---ChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC
Confidence 3566665532 1113356777776654432111 111122234444444433233 4699999999999999998665
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc--c
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE--P 254 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e--p 254 (465)
. ++|.|++.+|+|.++...+...+...... +...+. -|+++|+++++. +++++++. |
T Consensus 163 ~-----------pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v----~~~~~g-----~~~~~l~~~~~~-~~k~i~~~p~p 221 (431)
T PRK15481 163 L-----------PGDSVAVEDPCFLSSINMLRYAGFSASPV----SVDAEG-----MQPEKLERALAQ-GARAVILTPRA 221 (431)
T ss_pred C-----------CCCEEEEeCCCcHHHHHHHHHcCCeEEee----ccCCCC-----CCHHHHHHHHhc-CCCEEEECCCC
Confidence 2 68999999999998876655544322111 211111 278999998865 35555554 4
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCCCCCCcccccc-ccCCcccEEEecccCCCccceeeEEeCHHH
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDA-GALLVFDEVQCGLGRTGYLWAHE-HYGIFPDIMTLAKPLAGGLPIGAALVTEKV 332 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~gr~g~~~~~~-~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i 332 (465)
.||+| ...+.+.+++|.++|++| +++||+||+|..|...+...... ..+...-+-||||.++.|+|+||+++++++
T Consensus 222 ~NPTG--~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~~ 299 (431)
T PRK15481 222 HNPTG--CSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPDLRLAFVASDSAT 299 (431)
T ss_pred CCCCC--ccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCCceeEEEeCCHHH
Confidence 55554 456899999999999999 99999999999874322111111 111222344899999999999999999999
Q ss_pred HhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHH
Q 012368 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATP 412 (465)
Q Consensus 333 ~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~ 412 (465)
++.+.......+++.+.+++.++.++|+...-+.+.+++++.....++.+.+.+..++.....+..|+|+|+.++.+..+
T Consensus 300 ~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~~~~~ 379 (431)
T PRK15481 300 SARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDTDSQA 379 (431)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCCCHHH
Confidence 88885433334456789999999999974211223334444444444444444444443222455688899988556678
Q ss_pred HHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 413 VVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+++.|.++||.+.|+.. ++++||+++. .+++++++++++|.+++.
T Consensus 380 ~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 380 TALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINRLAADLHQALN 430 (431)
T ss_pred HHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence 99999999999998531 2579998764 468999999999998864
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=238.68 Aligned_cols=335 Identities=14% Similarity=0.091 Sum_probs=225.6
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc--cccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
|.+++++..|... ++ .++.+.+++.+.+.... +....+..+.++.+++++.+.++ +++|++|+|+++|+..
T Consensus 31 ~~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 107 (387)
T PRK08960 31 GHDVIHLEIGEPD--FT-TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL 107 (387)
T ss_pred CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence 4467888877653 33 47889999998876421 11111223345666666655433 7899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
++.+.. .+++.|++.+|+|.++...+...+..... .+...+..+ ..|+++++++++++...++
T Consensus 108 ~~~~~~-----------~~gd~vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~--~~d~~~l~~~~~~~~~~i~ 170 (387)
T PRK08960 108 ASSLLV-----------DPGKHWLLADPGYPCNRHFLRLVEGAAQL----VPVGPDSRY--QLTPALVERHWNADTVGAL 170 (387)
T ss_pred HHHHhc-----------CCCCEEEEcCCCCcchHHHHHhcCCeEEE----EecCcccCC--CCCHHHHHHHhCccceEEE
Confidence 888654 26899999999998876554433321111 111111000 0278999998886566778
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE---EecccCC-CccceeeE
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM---TLAKPLA-GGLPIGAA 326 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v 326 (465)
+++|.|++|. .++.+.+++|.++|++||+++|+||+|.++...+.... .....++++ +|||.+| .|+|+||+
T Consensus 171 i~~p~NPtG~--~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~g~~GlRiG~~ 246 (387)
T PRK08960 171 VASPANPTGT--LLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAAS--VLEVDDDAFVLNSFSKYFGMTGWRLGWL 246 (387)
T ss_pred EECCCCCCCc--CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC--hhhccCCEEEEeecccccCCcccEEEEE
Confidence 8888776663 45889999999999999999999999988743322111 122334444 6899998 69999999
Q ss_pred EeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-eeeccceEEEEE
Q 012368 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-DVRGLGLIIGIE 405 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~i~ 405 (465)
++++++++.+.......+.+.+.+++.++.++|+. ....+.+++++..+..++.+.+.+..++... ..+..|.++|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~ 325 (387)
T PRK08960 247 VAPPAAVPELEKLAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYAD 325 (387)
T ss_pred EcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEe
Confidence 99999988876544445566788999998888853 1234455545444444555555555555322 224446777888
Q ss_pred ec---CChHHHHHHHH-HCCceEeecC------CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 406 FD---VSATPVVDACR-DSGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 406 ~~---~~~~~~~~~l~-~~Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
++ .+..++++.|+ ++||.+.|+. .++++|+++.. +.+++.+++++|.++++
T Consensus 326 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 326 ISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--SLPRLQEAVERIARGLR 386 (387)
T ss_pred ccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 73 35677888876 5899998762 13689998774 68889999999887764
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=240.21 Aligned_cols=335 Identities=16% Similarity=0.092 Sum_probs=217.5
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA 167 (465)
+|+.++||..|.. .++ .+|.+.+++.+.+.... +....+..+.++++++++.+.++ ++ +|++|+|+++|
T Consensus 28 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a 104 (388)
T PRK07366 28 AGKELIDLSLGSS--DLP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG 104 (388)
T ss_pred cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence 4566788888765 344 47889999988775321 11111222345666666655444 56 69999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT 247 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 247 (465)
+..+++++.. +++.|++.+|+|.++...+...+...... ++.....+. .|++++++.+.++..
T Consensus 105 l~~~~~~l~~-----------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v----~~~~~~~~~--~d~~~l~~~~~~~~k 167 (388)
T PRK07366 105 TAHLPLAVLN-----------PGDFALLLDPGYPSHAGGVYLAGGQIYPM----PLRAENDFL--PVFADIPTEVLAQAR 167 (388)
T ss_pred HHHHHHHhCC-----------CCCEEEEcCCCCcchHHHHHhcCCEEEEE----ECCCccCCC--CCHHHHHHhhcccce
Confidence 9998886552 68999999999998876555444322111 111111111 267888777654444
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc--cccccc----CCcccEEEecccCC-Cc
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL--WAHEHY----GIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~--~~~~~~----~~~pdi~t~sK~lg-~G 320 (465)
++++++|.||+| ...+.+.+++|.++|++||++||+||+|..|...+.. ...... .....+.+|||.+| .|
T Consensus 168 ~i~l~~p~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 168 LMVLSYPHNPTT--AIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred EEEEeCCCCCCC--ccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence 556666666555 3458999999999999999999999999987443321 111111 11223448999997 69
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccce
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~ 400 (465)
+|+||+++++++++.+........++..+..+.++.+++.. .+++++++++..+..++.+.+.+.+++.....+..|+
T Consensus 246 lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~--~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~ 323 (388)
T PRK07366 246 FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTG--PQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATM 323 (388)
T ss_pred hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeE
Confidence 99999999999998886433323333333344555666642 3455555555555555555555555543223345688
Q ss_pred EEEEEecC----ChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 401 IIGIEFDV----SATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 401 ~~~i~~~~----~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
|+|+.++. +..++++.|+ ++||.+.|+. . .+++||+++ .+++++++++++|.++
T Consensus 324 f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 324 YVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV--HDPDILEEAVERIAAF 387 (388)
T ss_pred EEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence 88998842 3567887775 6799999862 1 368999765 5789999999999875
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=239.74 Aligned_cols=340 Identities=15% Similarity=0.101 Sum_probs=220.7
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCCCCHHHHHHHHHHHhhcC-----CC-eEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMYYSIPQIELAKRLVACSF-----AD-RVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~-----~~-~v~~~~sG~eA 167 (465)
.|++++|+..|.. .++ .+|.+.+++.+.+..... +...+....++++++++.+.++ ++ +|++|+|++++
T Consensus 42 ~~~~~i~L~~g~p--~~~-~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a 118 (410)
T PRK06290 42 PDMELIDMGVGEP--DEM-ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA 118 (410)
T ss_pred CCCCeEEcCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence 4667899988865 455 567788888876643211 1111222335666666655433 34 79999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT 247 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 247 (465)
+..++++.. ++++.|++.+|+|.++...+...+..... .+...+..+. .|++++++.+.++..
T Consensus 119 l~~~~~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~----v~~~~~~~~~--~d~~~l~~~~~~~~k 181 (410)
T PRK06290 119 LAMLPSCFI-----------NPGDVTLMTVPGYPVTGTHTKYYGGEVYN----LPLLEENNFL--PDLDSIPKDIKEKAK 181 (410)
T ss_pred HHHHHHHhC-----------CCCCEEEEeCCCCccHHHHHHHcCCEEEE----EecCCCcCCc--CCHHHHHHhhcccce
Confidence 999888654 26899999999998876544443322111 1111111111 278999888865434
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-cc---cCCcccEEEecccCC-Cccc
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EH---YGIFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~~---~~~~pdi~t~sK~lg-~G~~ 322 (465)
.+++++|+||+| .+.+.+.+++|.++|++||++||+||+|.++...+..... .. .+...-+.+|||.++ .|+|
T Consensus 182 ~i~l~nP~NPTG--~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlR 259 (410)
T PRK06290 182 LLYLNYPNNPTG--AVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWR 259 (410)
T ss_pred EEEEECCCCCCC--cCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhh
Confidence 445555866665 4458999999999999999999999999987433321111 11 122233458999997 5999
Q ss_pred eeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceE
Q 012368 323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLI 401 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~ 401 (465)
+||+++++++++.+.........+.+.+++.++.++|+. .++.++.++..+..++.+.+.+.+++. ...++. |.+
T Consensus 260 iG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~p~g~f~ 335 (410)
T PRK06290 260 LAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDH---PEITEKIREKYSRRLDKLVKILNEVGF-KAEMPGGTFY 335 (410)
T ss_pred eEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhC---cHHHHHHHHHHHHHHHHHHHHHHhCCC-eecCCCeeeE
Confidence 999999999998886433334445566788888888863 344444444444444445554445542 223333 455
Q ss_pred EEEEec---------CChHHHHHHHHHCCceE-eecCC-CCEEEEecC-CCCcHHHHHHHHHHHHHHHHHhh
Q 012368 402 IGIEFD---------VSATPVVDACRDSGLLV-LTAGK-GNVVRLVPP-LIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 402 ~~i~~~---------~~~~~~~~~l~~~Gv~v-~~~~~-~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+|+.++ .+..++++.|+++|+++ .|+.. ++++||++. ...++++.++++++|++.|..+.
T Consensus 336 l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 336 LYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred EEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence 567773 14678999999886544 45432 468999875 34588999999999999987654
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=238.82 Aligned_cols=335 Identities=15% Similarity=0.013 Sum_probs=219.9
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHhhcC-----CC-eEEecCCHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF-----AD-RVFFSNTGTEAN 168 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~-----~~-~v~~~~sG~eA~ 168 (465)
.|++++|+..+... ++ .++.+.+++.+.+.....+. ..+..+.++++++++.+.++ .+ +|++|+|+++|+
T Consensus 27 ~~~~~i~l~~~~p~--~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al 103 (396)
T PRK09147 27 ADLPPISLSIGEPK--HP-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL 103 (396)
T ss_pred cCCCeEecCCCCCC--CC-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence 47889999888753 44 46788899887665432221 11223446677777765544 24 899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCC---CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC
Q 012368 169 EAAIKFARKFQRHSNPDSKEP---ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~---~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (465)
..+++++.. + ++.|++.+|+|.++...+...+.... . .|...+..+. .|++++++.+.++
T Consensus 104 ~~~~~~l~~-----------~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~-~---vp~~~~~~~~--~d~~~l~~~~~~~ 166 (396)
T PRK09147 104 FAFAQTVID-----------RDGPGPLVVCPNPFYQIYEGAALLAGAEPY-F---LNCDPANNFA--PDFDAVPAEVWAR 166 (396)
T ss_pred HHHHHHHcC-----------CCCCCCEEEEcCCCccchHHHHHhcCCEEE-E---eccCccccCc--cCHHHHHHHHhhc
Confidence 999886652 4 78899999999887655443332211 1 1221111111 2788998877544
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--ccc-c---cc-----cCCcccEEEec
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWA-H---EH-----YGIFPDIMTLA 314 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~-~---~~-----~~~~pdi~t~s 314 (465)
...+++++|.||+| .+++++.+++|.++|++||++||+||+|..|...+. ... . .. ++...-+.+||
T Consensus 167 ~k~i~l~nP~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S 244 (396)
T PRK09147 167 TQLLFVCSPGNPTG--AVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLS 244 (396)
T ss_pred cEEEEEcCCCCCcC--ccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccc
Confidence 44556667766665 456899999999999999999999999998743331 111 1 00 11223344799
Q ss_pred ccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce
Q 012368 315 KPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK 393 (465)
Q Consensus 315 K~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 393 (465)
|.++ .|+|+||+++++++++.+.......+++.+++.+.++.+++. .+++.++.++..+..++.+.+.+..+ ...
T Consensus 245 K~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~ 320 (396)
T PRK09147 245 KRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWN---DEAHVRENRALYREKFDAVTPILAPV-LDV 320 (396)
T ss_pred cccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 9987 599999999999998887643333456778888888877774 33344443333333333333333332 111
Q ss_pred eeeccceEEEEEecCChHHHHHHHH-HCCceEeecCC-----------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 394 DVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGK-----------GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 394 ~~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~-----------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
..+..|.++|++++....++++.|+ ++||.+.|+.. .+++||++. .+++++++++++|.+++.
T Consensus 321 ~~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 321 QLPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALV--APLAECVEAAERIVDFCR 395 (396)
T ss_pred CCCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence 2345688889988645677888886 67999987521 257888655 468899999999998763
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=234.45 Aligned_cols=321 Identities=17% Similarity=0.185 Sum_probs=222.0
Q ss_pred CEEEecccCcccccCCC-CCHHHHHHHHHHHhhcc-------cccCC-----CCCHHHHHHHHHHHhhcCCCeEEecCCH
Q 012368 98 REYLDLSSGIAVNALGH-GDADWIKAVVDQANVLT-------HVSNM-----YYSIPQIELAKRLVACSFADRVFFSNTG 164 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~-------~~~~~-----~~~~~~~~la~~l~~~~~~~~v~~~~sG 164 (465)
.+++||+++.+ ||+ .+|++.+++.+++.+.. .+..+ ...+...+++++|+++++.+.+++++||
T Consensus 4 ~~~~~~~s~~Y---L~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG 80 (370)
T PRK05937 4 SLSIDFVTNDF---LGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSG 80 (370)
T ss_pred CceEEeECCCc---cCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECCh
Confidence 46899999876 887 88999999999887751 11111 1345689999999999997778888999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC
Q 012368 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP 244 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 244 (465)
+.|+..++... . +++.+|+.++.+|++....+..... ....++++|+++|+++++.
T Consensus 81 ~~a~~~~~~~~---~---------~~~d~ii~d~~~H~sv~~~~~~~~~------------~~~~~~~~d~~~l~~~l~~ 136 (370)
T PRK05937 81 YMANLGLCAHL---S---------SVTDYVLWDEQVHISVVYSLSVISG------------WHQSFRHNDLDHLESLLES 136 (370)
T ss_pred HHHHHHHHHHh---C---------CCCCEEEEEhhhhHHHHHHHHHcCC------------ceEEecCCCHHHHHHHHHh
Confidence 99986544322 1 2557899999999998776543210 1123467899999999862
Q ss_pred -----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCccccc--cccCCcccEEEecc
Q 012368 245 -----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAH--EHYGIFPDIMTLAK 315 (465)
Q Consensus 245 -----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~g~~~~~--~~~~~~pdi~t~sK 315 (465)
.++.+|+++++++++|.+.| +++|.++|+++|+++|+||+|+ | +|..|.++.. ...+..+|+.||||
T Consensus 137 ~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK 212 (370)
T PRK05937 137 CRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSK 212 (370)
T ss_pred hhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechh
Confidence 24567888999999999887 9999999999999999999998 3 5555543221 11123367889999
Q ss_pred cCCC-ccceeeEEeCHHHHhhccC--CCCcCCCCChHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHcCC
Q 012368 316 PLAG-GLPIGAALVTEKVASAINY--GDHGSTFAGSPLVCNAAIAVLDKISNP--AFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 316 ~lg~-G~~iG~v~~~~~i~~~~~~--~~~~~t~~~~~~~~~aa~a~L~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
.+|+ | +.+++.+++.+.+.. .....+.+.++++++++.++++.+.+. ...++++++.+++++.|.. ..
T Consensus 213 ~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~----~~ 285 (370)
T PRK05937 213 ALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS----AA 285 (370)
T ss_pred hhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC----CC
Confidence 9975 4 345565665554331 122333446788888888888877542 2344555555555444321 11
Q ss_pred CceeeeccceEEEEEec-CChHHHHHHHHHCCceEeecC--CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 391 HVKDVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG--KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 391 ~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.+....+.++ .....+.+.|.++||++.... ..+.+|++++..+|++|++++++.|+++++++.++
T Consensus 286 -------~~~~~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~~ 354 (370)
T PRK05937 286 -------PGCVQPIFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQKN 354 (370)
T ss_pred -------CCCEEEEEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 1112223332 345678888999999887432 13679999999999999999999999999887654
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=238.48 Aligned_cols=332 Identities=18% Similarity=0.157 Sum_probs=222.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhccc-c-cCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-V-SNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~a 171 (465)
..|||..|.+. +. .++.+.+++.+.+.+... + ...+..+.++++++++.+.++ .+ +|++|+|+++|+..+
T Consensus 55 ~~i~l~~G~P~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~ 131 (413)
T PLN00175 55 GAINLGQGFPN--FD-GPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAAT 131 (413)
T ss_pred CeEecCCCCCC--CC-CCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHH
Confidence 57899888763 22 467899999888775211 1 111223346667776665544 44 699999999999988
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
+.... ++++.|++.+|+|..+...+...+...... +..+.. + ..|+++|++.+.++...+++
T Consensus 132 ~~~l~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v----~~~~~~-~--~~~~~~l~~~~~~~~k~i~i 193 (413)
T PLN00175 132 ILGLI-----------NPGDEVILFAPFYDSYEATLSMAGAKIKTV----TLRPPD-F--AVPEDELKAAFTSKTRAILI 193 (413)
T ss_pred HHHhC-----------CCCCEEEEeCCCchhHHHHHHHcCCEEEEE----ECCccc-C--CCCHHHHHHhcCcCceEEEe
Confidence 88554 268999999999987765444333221111 111110 0 12789999998754444445
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccC---CcccEEEecccCC-CccceeeE
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYG---IFPDIMTLAKPLA-GGLPIGAA 326 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~---~~pdi~t~sK~lg-~G~~iG~v 326 (465)
.+|.|++| .+++.+.+++|.++|++||+++|+||+|.++.+.+.... ....+ ....+.+|||.++ .|+|+||+
T Consensus 194 ~~p~NPtG--~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~ 271 (413)
T PLN00175 194 NTPHNPTG--KMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWA 271 (413)
T ss_pred cCCCCCCC--cCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeee
Confidence 55655554 346899999999999999999999999998744332111 11112 2233447999999 69999999
Q ss_pred EeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEE
Q 012368 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIE 405 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~ 405 (465)
++++++++.+.......+++.+++.+.++.++|+.. +.+.+++++..+..++.+.+.+.+++. ....+. |.|+|+.
T Consensus 272 v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~p~g~~f~~~~ 348 (413)
T PLN00175 272 IAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAP--ESYYEELKRDYSAKKDILVEGLKEVGF-KVYPSSGTYFVMVD 348 (413)
T ss_pred EeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCC-eecCCCeeEEEEEe
Confidence 999999988865444456888999999999888632 344455555444445555555555442 233333 4567777
Q ss_pred ec---C-ChHHHHHHHH-HCCceEeecC-------C-CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 406 FD---V-SATPVVDACR-DSGLLVLTAG-------K-GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 406 ~~---~-~~~~~~~~l~-~~Gv~v~~~~-------~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+. . +..++++.|+ ++||.+.|+. . .+++||++. .+++++++++++|.++++
T Consensus 349 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 349 HTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK 412 (413)
T ss_pred ccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence 62 2 3568999887 5699998752 1 257899765 489999999999998875
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=234.98 Aligned_cols=334 Identities=18% Similarity=0.128 Sum_probs=221.9
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhccc-c-cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-V-SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al 172 (465)
.+++|..|.+. ++ .++.+.+++.+.+..... + ...+..+.++++++++.+.++ .++|++++|+++|+..++
T Consensus 25 ~~i~l~~g~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 101 (382)
T PRK06108 25 GVLPLWFGESD--LP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA 101 (382)
T ss_pred CeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence 46888887663 33 478899999988765321 1 112233447777777776655 689999999999999988
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
+.+.. +++.|++.+|+|..+...+...+.... . .+... +..+ ..|++++++.++++...+++
T Consensus 102 ~~l~~-----------~gd~vl~~~p~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~--~~d~~~l~~~~~~~~~~i~l 164 (382)
T PRK06108 102 QALVG-----------PGDEVVAVTPLWPNLVAAPKILGARVV-C---VPLDFGGGGW--TLDLDRLLAAITPRTRALFI 164 (382)
T ss_pred HHhcC-----------CCCEEEEeCCCccchHHHHHHCCCEEE-E---eeCCCCCCCc--cCCHHHHHHhcCccceEEEE
Confidence 86642 688999999999776544333222111 1 11111 0000 02789999988754444555
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC-Ccc-cc-ccccC---CcccEEEecccCC-Ccccee
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-GYL-WA-HEHYG---IFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~-g~~-~~-~~~~~---~~pdi~t~sK~lg-~G~~iG 324 (465)
+.|.|++| . .++.+.+++|.++|+++|+++|+||+|.+|... +.. .. ....+ ...-+.+|||.++ .|+|+|
T Consensus 165 ~~p~NPtG-~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG 242 (382)
T PRK06108 165 NSPNNPTG-W-TASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLG 242 (382)
T ss_pred ECCCCCCC-c-ccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCccccee
Confidence 56655554 3 458899999999999999999999999987443 211 11 11111 1122447999998 599999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIG 403 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~ 403 (465)
|+++++++++.+.......+++.+++.+.++.++|+.. +++.+++++.....++.+.+.+...+.+....+. |.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~ 320 (382)
T PRK06108 243 WLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG--EDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAF 320 (382)
T ss_pred eeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEE
Confidence 99999999888764333345667889999999888742 3344444444444445555544444433333333 55667
Q ss_pred EEec--CChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 404 IEFD--VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 404 i~~~--~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+.++ .+..++++.|+ ++||.+.++. ..+++|++++. +++++++++++|.++++
T Consensus 321 ~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 321 FRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 7774 34677888886 5799998752 13689998876 89999999999998764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=236.42 Aligned_cols=344 Identities=13% Similarity=0.093 Sum_probs=224.3
Q ss_pred CCEEEecccCcccccCCC-CCHHHHHHHHHHHhhccc-ccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTH-VSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~-~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
|+.+|++..+.+...-.. .+|++.+++.+++..... .+. .+..+.++.+++++.+.++ .++|++|+|+++|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al 130 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI 130 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence 778999988865431112 567899999988865321 111 1222335556666554433 57899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
.++++.+. .++++|++.+|+|+.+.......+....+. ++.+...+. -|+++++++++++..+
T Consensus 131 ~l~~~~l~-----------~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~----~~~~~~~~~--~d~~~l~~~~~~~~~~ 193 (430)
T PLN00145 131 EIIMSVLA-----------QPGANILLPRPGYPLYEARAVFSGLEVRHF----DLLPERGWE--VDLEGVEALADENTVA 193 (430)
T ss_pred HHHHHHhc-----------CCCCEEEEcCCCCccHHHHHHHcCCEEEEe----eCCcccCCc--CCHHHHHHHhCcCceE
Confidence 99988664 268999999999988664433333221111 111111110 2889999999876778
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccccC---CcccEEEecccCC-Cccce
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHYG---IFPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~~---~~pdi~t~sK~lg-~G~~i 323 (465)
+++++|+|++| .+.+.+.+++|.++|++||+++|+||+|.+|.+.+.. .....++ ...-+-+|||.++ .|||+
T Consensus 194 i~i~~P~NPtG--~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~Rl 271 (430)
T PLN00145 194 MVIINPNNPCG--SVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRL 271 (430)
T ss_pred EEEeCCCCCCC--CCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeE
Confidence 88899976665 4568899999999999999999999999987543321 1111111 1223347899977 49999
Q ss_pred eeEEe--CHHHHh------hccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee-
Q 012368 324 GAALV--TEKVAS------AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD- 394 (465)
Q Consensus 324 G~v~~--~~~i~~------~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~- 394 (465)
||+++ ++.+++ .+... .....+.+.+.|.|+..+|+.- .+++.++.++..+..++.+.+.+..++.+..
T Consensus 272 G~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~ 349 (430)
T PLN00145 272 GWIATCDPNGILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIANT-KEEFFTKTLGLLKETADICYEKIKEIKCITCP 349 (430)
T ss_pred EEEEEecchhhhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99997 344432 22211 1222345778899988888731 2345555554444445555555566654432
Q ss_pred -eeccceEEEEEecC-------ChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 395 -VRGLGLIIGIEFDV-------SATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 395 -~~~~g~~~~i~~~~-------~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+..|.|+++.++. +..+++..|+ ++||.+.|+. ..+++||++. .+.+++++++++|.+++.+.++
T Consensus 350 ~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~~al~rl~~~~~~~~~ 427 (430)
T PLN00145 350 HKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLEDGLERLKSFCLRHAK 427 (430)
T ss_pred cCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhcc
Confidence 24456677777631 3456776665 6799998863 2478999776 4789999999999999988765
Q ss_pred c
Q 012368 463 N 463 (465)
Q Consensus 463 ~ 463 (465)
.
T Consensus 428 ~ 428 (430)
T PLN00145 428 L 428 (430)
T ss_pred c
Confidence 4
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=234.27 Aligned_cols=322 Identities=20% Similarity=0.275 Sum_probs=221.3
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
+|.+++||..|.. +++ .+|.+.+++.+.+.... .|+.....+|++.++++++ +++|++|+|+++++..+++
T Consensus 28 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~----~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~ 100 (357)
T PRK14809 28 DPDDLVKLSSNEN--PHG-PSPAAVEAIREAAERVH----SYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLAR 100 (357)
T ss_pred CccceeEecCCCC--CCC-CCHHHHHHHHHHHhhhh----cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence 4567999988754 455 67889999888765422 2333335678888888776 7899999999999999888
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
++.. +++.|++.+|+|..+.......+.... . .++.....+ ..|++++++... +...+++++
T Consensus 101 ~~~~-----------~gd~V~v~~P~y~~~~~~~~~~g~~~~-~---~~l~~~~~~--~~~~~~~~~~~~-~~k~i~l~~ 162 (357)
T PRK14809 101 AMLD-----------PGDTVLVPDPGFAYYGMSARYHHGEVR-E---YPVSKADDF--EQTADTVLDAYD-GERIVYLTS 162 (357)
T ss_pred HhcC-----------CCCEEEEeCCChHHHHHHHHHcCCeEE-E---EecccCcCC--CcCHHHHHHhhc-CCcEEEEeC
Confidence 6642 689999999998755433222221111 0 011110000 025677766653 234566666
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccccCCcccEEEecccCC-CccceeeEEeCHH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~ 331 (465)
|.|++| ..++.+.+++|.++|++ +++||+||+|..|...+... ..+..+....+.+|||.++ .|+|+||++++++
T Consensus 163 p~NPTG--~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~ 239 (357)
T PRK14809 163 PHNPTG--SEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEE 239 (357)
T ss_pred CCCCCC--cCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHH
Confidence 666655 34588889999999875 78999999999885433211 1122233344568999998 6999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+... ..+++.+++++.++.++|+ ++++.++.++..+..++.+.+.+... ..+..|+|+++.+. +..
T Consensus 240 ~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~g~f~~~~~~-~~~ 309 (357)
T PRK14809 240 WADAYARV--NTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIREELDAP----TWESAGNFVLAEVG-DAS 309 (357)
T ss_pred HHHHHHHh--CCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCc----cCCCCCCEEEEECC-CHH
Confidence 99888643 3467788899988888875 35556666655555566665555432 12456889998874 567
Q ss_pred HHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
++.+.|.++||.+.++.. ++++|+++. +.+++++++++|+++++
T Consensus 310 ~~~~~l~~~gv~v~~g~~f~~~~~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 310 AVAEAAQERGVIVRDCTSFGLPECIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred HHHHHHHHCCEEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence 899999999999998742 468999753 57899999999998764
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=234.56 Aligned_cols=340 Identities=14% Similarity=0.105 Sum_probs=220.6
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA 167 (465)
.|+.+|||..+.+ .++ .++.+.+++.+.++... +....+..+.++++++++.+.++ ++ +|++|+|+++|
T Consensus 28 ~~~~~i~l~~~~p--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 104 (405)
T PRK09148 28 AGADIIDLGMGNP--DLP-TPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG 104 (405)
T ss_pred cCCCeEEcCCCCC--CCC-CCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 4667889987754 344 36788888887764311 11111223446666666665544 45 79999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT 247 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 247 (465)
+..+++.... +++.|++.+|+|.++...+...+.... . .+...+..+. .+++++.+...++..
T Consensus 105 l~~~~~~l~~-----------~gd~Vl~~~P~y~~~~~~~~~~g~~v~-~---v~~~~~~~~~--~~l~~~~~~~~~~~~ 167 (405)
T PRK09148 105 FANMAQAITA-----------PGDVILCPNPSYPIHAFGFIMAGGVIR-S---VPAEPDEEFF--PALERAVRHSIPKPI 167 (405)
T ss_pred HHHHHHHhcC-----------CCCEEEEcCCCCcccHHHHHhcCCEEE-E---EeCCCCCCCc--cCHHHHHhhccccce
Confidence 9998886652 689999999999987654433322111 0 1111111110 134333332223345
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-ccccc----CCcccEEEecccCC-Ccc
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY----GIFPDIMTLAKPLA-GGL 321 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~----~~~pdi~t~sK~lg-~G~ 321 (465)
.++++.|+|++| ..++.+.+++|.++|++||+++|+||+|..|...+... ..... +....+.+|||.++ .|+
T Consensus 168 ~v~l~~P~NPtG--~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGl 245 (405)
T PRK09148 168 ALIVNYPSNPTA--YVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGW 245 (405)
T ss_pred EEEEeCCCCCCC--cCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcch
Confidence 566677777665 44589999999999999999999999998874333211 11111 22233458999999 699
Q ss_pred ceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012368 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
|+||+++++++++.+.......+++.+++++.++.++|+. .+++.+++++..+..++.+.+.+.+++.....+..|+|
T Consensus 246 R~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f 323 (405)
T PRK09148 246 RMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMF 323 (405)
T ss_pred heeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCeeEE
Confidence 9999999999998886543334566778889988888863 23445555544444445554544444432222445778
Q ss_pred EEEEecC-----ChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 402 IGIEFDV-----SATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 402 ~~i~~~~-----~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+|+.++. ...++++.|+ ++||.+.|+. . .+++||++. .+.+++++++++|.+++.++.
T Consensus 324 ~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~ 392 (405)
T PRK09148 324 AWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSSAD 392 (405)
T ss_pred EEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHH
Confidence 8888732 2467888876 6899999863 1 368999765 578999999999999887653
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=233.19 Aligned_cols=324 Identities=21% Similarity=0.233 Sum_probs=221.5
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
++++++||.++.. ++| .+|.+++++.+.+.... .|+.....++++.++++++ .++|++|+|+++++..+++
T Consensus 30 ~~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~----~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 30 GIADIIKLASNEN--PLG-PSPKAIEAIRAAADELH----RYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLAR 102 (367)
T ss_pred CCCceEEecCCCC--CCC-CCHHHHHHHHHHHHhhc----CCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence 5678999999854 567 57889999998876532 2333334578888888886 6789999999999888777
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.... +++.|++.+|+|..+.......+.... . .+. .+. ..|++++++.++++...+++++
T Consensus 103 ~l~~-----------~gd~vl~~~p~y~~~~~~~~~~g~~~~-~---~~~-~~~----~~~~~~l~~~~~~~~~~v~l~~ 162 (367)
T PRK02731 103 AYLG-----------PGDEVIYSEHGFAVYPIAAQAVGAKPV-E---VPA-KDY----GHDLDAMLAAVTPRTRLVFIAN 162 (367)
T ss_pred HhcC-----------CCCEEEEecCCHHHHHHHHHHcCCeEE-E---ecc-cCC----CCCHHHHHHHhCCCCcEEEEeC
Confidence 5531 588999999999766543332221111 1 011 111 1278999999875333444555
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccccCCcccEE---EecccCC-CccceeeEEe
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPDIM---TLAKPLA-GGLPIGAALV 328 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~ 328 (465)
|.|++ |. ..+.+.+++|.+.|+ +|+++|+||+|.++.+.+. .......+..++++ +|||.+| +|+|+||+++
T Consensus 163 p~npt-G~-~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~ 239 (367)
T PRK02731 163 PNNPT-GT-YLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIA 239 (367)
T ss_pred CCCCC-Cc-CCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeC
Confidence 55554 44 346666777776664 5999999999987644332 11222222223443 7999998 6999999999
Q ss_pred CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-
Q 012368 329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD- 407 (465)
Q Consensus 329 ~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~- 407 (465)
++++++.+... ..+++.+++++.++.++|+ ..++.+++++.....++.+.+.+..++. ...++.|.++++.++
T Consensus 240 ~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~g~~~~i~~~~ 313 (367)
T PRK02731 240 PPEIIDALNRV--RQPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAELGL-EYIPSVGNFILVDFDD 313 (367)
T ss_pred CHHHHHHHHHc--cCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCCceEEEEECCC
Confidence 99999888643 2356778888988888875 3445555555555555666665555542 223456889999883
Q ss_pred -CChHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 408 -VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 408 -~~~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.++.++++.|.++||.+.++.. .+++|++++ +.++++++++.|+++++
T Consensus 314 ~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 314 GKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFLA 365 (367)
T ss_pred CCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence 4678899999999999988642 368999864 78899999999998764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-27 Score=237.14 Aligned_cols=344 Identities=15% Similarity=0.106 Sum_probs=222.6
Q ss_pred CCCEEEecccCccccc-CCCCCHHHHHHHHHHHhhcccccCCCCC----HHHHHHHHHHHhhcC----CCeEEecCCHHH
Q 012368 96 EGREYLDLSSGIAVNA-LGHGDADWIKAVVDQANVLTHVSNMYYS----IPQIELAKRLVACSF----ADRVFFSNTGTE 166 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~-lGh~~p~v~~a~~~~~~~~~~~~~~~~~----~~~~~la~~l~~~~~----~~~v~~~~sG~e 166 (465)
+++.+|++..+.+... .--.++++.+++.+.++.... ..+.+. +.++++++++.+.++ +++|++|+|+++
T Consensus 64 ~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~ 142 (462)
T PLN02187 64 VNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKG-NSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQ 142 (462)
T ss_pred CCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCC-CCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHH
Confidence 4677888887754311 011457789999988765321 111122 235555555544333 789999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (465)
|+..+++.+. ++++.|++.+|+|.++...+...+...... ++.+...+ --|+++|+++++++.
T Consensus 143 al~~~~~~l~-----------~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~----~l~~~~~~--~~d~~~l~~~~~~~~ 205 (462)
T PLN02187 143 GIEIVFESLA-----------RPNANILLPRPGFPHYDARAAYSGLEVRKF----DLLPEKEW--EIDLEGIEAIADENT 205 (462)
T ss_pred HHHHHHHHhc-----------CCCCEEEEeCCCCccHHHHHHHcCCEEEEE----eCccccCC--ccCHHHHHHhcCCCc
Confidence 9999999665 268999999999998764443333211110 11110000 027899999987667
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-ccccc-CC--cccEEEecccCC-Ccc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-GI--FPDIMTLAKPLA-GGL 321 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~-~~--~pdi~t~sK~lg-~G~ 321 (465)
.++++++|+|++| .+++.+.+++|.++|++||++||+||+|.+|.+.+..+ ....+ +. ..-+.+|||.++ .|+
T Consensus 206 ~~v~i~nP~NPTG--~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGl 283 (462)
T PLN02187 206 VAMVVINPNNPCG--NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGW 283 (462)
T ss_pred EEEEEeCCCCCCC--CccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccc
Confidence 7889999987776 45689999999999999999999999999864434221 11111 11 122347999987 599
Q ss_pred ceeeEEeC-H-HH---HhhccCCCCc--CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 322 PIGAALVT-E-KV---ASAINYGDHG--STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 322 ~iG~v~~~-~-~i---~~~~~~~~~~--~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
|+||++++ + .+ ++.+...... .+.+.+.+++.|+.++|+.. .+++++++++..+..++.+.+.+..++....
T Consensus 284 RiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~-~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~ 362 (462)
T PLN02187 284 KIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKA-DKNFFAKKNKILKHNVDLVCDRLKDIPCVVC 362 (462)
T ss_pred eeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcC
Confidence 99999983 3 22 2233221111 22245788999999988741 2355555555555555556555555553322
Q ss_pred --eeccceEEEEEecC-------ChHHHHHHH-HHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 395 --VRGLGLIIGIEFDV-------SATPVVDAC-RDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 395 --~~~~g~~~~i~~~~-------~~~~~~~~l-~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+..|+|+++.++. +..+++..+ .++||.+.|+. ..+++||++. .+++.+++++++|.+++++..
T Consensus 363 ~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~--~~~e~l~~al~rL~~~l~~~~ 440 (462)
T PLN02187 363 PKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIG--VEAHMLEDALERLKGFCTRHA 440 (462)
T ss_pred CCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 23446788876631 344665554 68899999863 2478999765 468999999999999998765
Q ss_pred h
Q 012368 462 S 462 (465)
Q Consensus 462 ~ 462 (465)
+
T Consensus 441 ~ 441 (462)
T PLN02187 441 K 441 (462)
T ss_pred h
Confidence 4
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=233.31 Aligned_cols=343 Identities=13% Similarity=0.114 Sum_probs=222.1
Q ss_pred CCCCEEEecccCcccc--cCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHH
Q 012368 95 AEGREYLDLSSGIAVN--ALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGT 165 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~--~lGh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~ 165 (465)
.+|+..|++..|.+.- .+. .+|.+.+++.+.++... +....+..+.++++++++.+.++ +++|++|+|++
T Consensus 29 ~~~~~~i~l~~G~p~~~~~~~-~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~ 107 (409)
T PLN00143 29 DDHRLAISFGFGDPSCFECFR-TTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCK 107 (409)
T ss_pred CCCCceeeCCCCCCCCCCCCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChH
Confidence 4577889998876531 122 67888899998877531 11222333446666666665443 68999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhcC
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~ 243 (465)
+|+..+++.... +++.|++.+|+|+++...+...+..... .+.. .+.. -|+++|+++++
T Consensus 108 ~al~~~~~~l~~-----------~gd~v~v~~P~y~~~~~~~~~~g~~~~~----~~~~~~~~~~----~d~~~l~~~~~ 168 (409)
T PLN00143 108 HAAEIIIKVLAR-----------PEANILLPRPGFPDVETYAIFHHLEIRH----FDLLPEKGWE----VDLDAVEAIAD 168 (409)
T ss_pred HHHHHHHHHHcC-----------CCCEEEEcCCCCcCHHHHHHHcCCEEEE----EeccCCCCCc----CCHHHHHHhcc
Confidence 999999986652 6899999999998876544433321111 1111 1111 28899999987
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccccC---CcccEEEecccCC-
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYG---IFPDIMTLAKPLA- 318 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~~---~~pdi~t~sK~lg- 318 (465)
.+..++++++|.|++| ..++.+.+++|.++|++|+++||+||+|.+|...+..+ ....+. ...-+.+|||.++
T Consensus 169 ~~~~~~~~~nP~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 246 (409)
T PLN00143 169 ENTIAMVIINPGNPCG--SVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMI 246 (409)
T ss_pred cCCEEEEEECCCCCCC--CccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCC
Confidence 6677888899977666 44589999999999999999999999999875444311 111111 1223347999977
Q ss_pred CccceeeEEeC--HHHH------hhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC
Q 012368 319 GGLPIGAALVT--EKVA------SAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 319 ~G~~iG~v~~~--~~i~------~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
.|+|+||++++ +.++ +.+........+ .+.+++.++.++|+.. .++++++..+..+..++.+.+.+.+++
T Consensus 247 pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~ 324 (409)
T PLN00143 247 PGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKT-TEDFFSKTINILRAALAFCYDKLKEIP 324 (409)
T ss_pred CccceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 59999999983 3332 222211112223 4778888888888631 123333333333333344444444444
Q ss_pred Cce--eeeccceEEEEEecC-------ChHHHHHHH-HHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 391 HVK--DVRGLGLIIGIEFDV-------SATPVVDAC-RDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 391 ~~~--~~~~~g~~~~i~~~~-------~~~~~~~~l-~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
... ..+..|.|+|++++. +..+++..+ .++||.+.|+. ..+++||++. .+++++++++++|.+++
T Consensus 325 ~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~--~~~~~l~~al~rl~~~l 402 (409)
T PLN00143 325 CIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFA--VEQSSLEDGLGRLKSFC 402 (409)
T ss_pred CCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEc--CCHHHHHHHHHHHHHHH
Confidence 322 123347888888841 355666555 68899999864 2478999765 56899999999999999
Q ss_pred HHhhhc
Q 012368 458 PVLDSN 463 (465)
Q Consensus 458 ~~~~~~ 463 (465)
.+..+.
T Consensus 403 ~~~~~~ 408 (409)
T PLN00143 403 GRHAKK 408 (409)
T ss_pred HHhccC
Confidence 776543
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-27 Score=233.41 Aligned_cols=332 Identities=15% Similarity=0.101 Sum_probs=213.9
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--c-cCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--V-SNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~-~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~ 168 (465)
|..+|||..+.+ -...+|.+.+++.+.+..... + ...+..+.++++++++.+.++ .+ +|++|+|+++++
T Consensus 31 ~~~~i~l~~~~p---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l 107 (389)
T PRK08068 31 GHDVINLGQGNP---DQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGL 107 (389)
T ss_pred CCCeEEecCCCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHH
Confidence 445788887744 234678899999888764211 1 112223335566666554434 45 799999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
..+++.... +++.|++.+|+|..+...+...+..... .+...+..+. .|++++++.+..+...
T Consensus 108 ~~~~~~~~~-----------~gd~vlv~~P~y~~~~~~~~~~g~~~~~----i~~~~~~~~~--~d~~~l~~~~~~~~~~ 170 (389)
T PRK08068 108 VELPQCLMN-----------PGDTILVPDPGYPDYLSGVALARAQFET----MPLIAENNFL--PDYTKIPEEVAEKAKL 170 (389)
T ss_pred HHHHHHhCC-----------CCCEEEEcCCCCcchHHHHHhcCCEEEE----eecccccCCC--CCHHHHHHhccccceE
Confidence 988775541 6889999999998776554443322111 1221111111 2788999888654445
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-c-ccccccC---CcccEEEecccCC-Cccc
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-L-WAHEHYG---IFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~-~~~~~~~---~~pdi~t~sK~lg-~G~~ 322 (465)
+++++|+|++| ..++.+.+++|.++|++||+++|+||+|..|...+. . ......+ ....+.+|||.+| .|+|
T Consensus 171 v~l~~P~NPTG--~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlR 248 (389)
T PRK08068 171 MYLNYPNNPTG--AVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWR 248 (389)
T ss_pred EEEECCCCCCC--CcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccce
Confidence 55666876665 356899999999999999999999999987755442 1 1112122 2234458999998 6999
Q ss_pred eeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc-eE
Q 012368 323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG-LI 401 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g-~~ 401 (465)
+||+++++++++.+.........+.+++.+.++.++|.. .+.+.+++++..+..++.+.+.+..++. ...++.| .+
T Consensus 249 iG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~r~~~~~~L~~~g~-~~~~~~g~~~ 325 (389)
T PRK08068 249 VAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLS--DQSCVAELVARYESRRNAFISACREIGW-EVDAPKGSFF 325 (389)
T ss_pred eEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCCC-cccCCCeeEE
Confidence 999999999998886433223344455667777776642 2344444444444444445444445543 2334445 55
Q ss_pred EEEEec--CChHHHHHHHHH-CCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 402 IGIEFD--VSATPVVDACRD-SGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 402 ~~i~~~--~~~~~~~~~l~~-~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+|+.++ .++.++.+.|++ +||.+.++. . .+++||++. .+++.+.+++++|.+
T Consensus 326 ~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~ 385 (389)
T PRK08068 326 AWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL--TDEERLREAVERIGK 385 (389)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 688874 357789999986 699998852 1 368999775 467888888888765
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-27 Score=228.63 Aligned_cols=308 Identities=16% Similarity=0.068 Sum_probs=208.2
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
.+++|+.+|. +++|...+.+.+ ..+.. |+... .+|.+.|+++++.++|++|+|++||+..++. +.
T Consensus 20 ~~~i~l~~ne--~p~~~~~~~~~~---~~~~~-------yp~~~-~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~~-~~- 84 (330)
T PRK05664 20 ADWLDLSTGI--APWPWPVPAIPA---DAWAR-------LPETD-DGLEAAARAYYGAPQLLPVAGSQAAIQALPR-LR- 84 (330)
T ss_pred HHheeecCCc--CCCCCCCcccCH---HHHHh-------CCCCh-HHHHHHHHHHhCCCCEEECcCHHHHHHHHHH-cc-
Confidence 3578888885 467765444422 22222 33322 6888999999999999999999999987753 11
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCC
Q 012368 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG 257 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~ 257 (465)
++++|++.+|+|+++...+...+. .+..+| +++++++++. ...+++++|+||
T Consensus 85 -----------~gd~v~v~~P~y~~~~~~~~~~g~-------------~~~~v~---~~~~~~~~~~-~~~v~l~nP~NP 136 (330)
T PRK05664 85 -----------APGRVGVLSPCYAEHAHAWRRAGH-------------QVRELD---EAEVEAALDS-LDVLVVVNPNNP 136 (330)
T ss_pred -----------CCCEEEEcCCChHHHHHHHHHcCC-------------eEEEec---hhhHhhhhcC-CCEEEEeCCcCC
Confidence 588999999999888755443322 222232 3556666653 346788999877
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHHHHhhc
Q 012368 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAI 336 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~ 336 (465)
+|. ..+.+.+++|.++|+++|++||+||+|.++............+...-+.||||.+| .|+|+||+++++++++.+
T Consensus 137 TG~--~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~ 214 (330)
T PRK05664 137 TGR--RFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRAL 214 (330)
T ss_pred CCC--ccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcceEEEEeCHHHHHHH
Confidence 664 45888899999999999999999999987732112112221122233458999999 799999999999999888
Q ss_pred cCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHH
Q 012368 337 NYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDA 416 (465)
Q Consensus 337 ~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~ 416 (465)
... ..+++.+.+++.++.++|+. ..+.++.++.....++.+.+.+.+++. ....+.++|+++.++ +..++.+.
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~~~~~~f~~~~~~-~~~~~~~~ 287 (330)
T PRK05664 215 AEL--LGPWTVSGPTRWLAQAALAD---TPWQRRQRERLLAASQRLAALLRRHGL-TPAGGCALFQWVRTE-DAAALHEF 287 (330)
T ss_pred HHh--cCCCCCCHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHHCCC-cccCCcceEEEEecC-CHHHHHHH
Confidence 643 23466778888888888863 233334444444444444454444442 222333467777653 56789999
Q ss_pred HHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 417 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 417 l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
|.++||.+...+..+++||+++. +.++++++++.|++..++
T Consensus 288 l~~~gi~v~~f~~~~~iRis~~~--~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 288 LARRGILTRLFEQPASLRFGLPA--DEADWARLDQALLAYRKE 328 (330)
T ss_pred HHHCCeEEEECCCCCeEEEECCC--CHHHHHHHHHHHHHHHhh
Confidence 99999999876445789997653 677888888888766543
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=229.99 Aligned_cols=327 Identities=16% Similarity=0.157 Sum_probs=217.4
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHH
Q 012368 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al 172 (465)
.++.+++||..|. +++| .+|.+++|+.+.+.... .|+.....++++.++++++ +++|++++|+++++..++
T Consensus 17 ~~~~~~i~l~~~~--~~~~-~p~~~~~a~~~~~~~~~----~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~ 89 (356)
T PRK08056 17 ISPDQLLDFSANI--NPLG-MPVSLKRAIIDNLDCAE----RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVV 89 (356)
T ss_pred CChhhEEEecccc--CCCC-CCHHHHHHHHHHHHhcc----cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHH
Confidence 3566789998764 4566 77889999988776532 2344446788888888886 789999999999999888
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ 252 (465)
+.+. ++ .+++.+|+|..+...+...+.... . .+...+..+. .| +++++.+.++...++++
T Consensus 90 ~~l~------------~g-~viv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~--~~-~~~~~~~~~~~k~v~l~ 149 (356)
T PRK08056 90 SGLK------------PR-RAMIVTPGFAEYRRALQQVGCEIR-R---YSLREADGWQ--LT-DAILEALTPDLDCLFLC 149 (356)
T ss_pred HHhC------------CC-CEEEeCCCcHHHHHHHHHcCCeEE-E---EecccccCCC--cc-HHHHHhccCCCCEEEEe
Confidence 8542 34 478889999776644333322111 1 1111111110 13 34445555433445556
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc--cccccCCcccEEEecccCC-CccceeeEEe-
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHEHYGIFPDIMTLAKPLA-GGLPIGAALV- 328 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~--~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~- 328 (465)
+|.|++| ...+++.+++|.++|++|++++|+||+|.+|...+... .....+...-+.+|||.++ .|+|+||+++
T Consensus 150 ~p~NPTG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~ 227 (356)
T PRK08056 150 TPNNPTG--LLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNS 227 (356)
T ss_pred CCcCCCC--CCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecC
Confidence 7766665 35688999999999999999999999999874433211 1122222233457999999 6999999998
Q ss_pred CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC
Q 012368 329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 329 ~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~ 408 (465)
++++++.+... ...++.+.+++.++.++|+ .+.+.++.++..+..++.+.+.+..++.+...++.|.++|+.+..
T Consensus 228 ~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
T PRK08056 228 DDAAVARMRRQ--QMPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARFYQALCALPLLTVWPGRANYLFLRCER 302 (356)
T ss_pred CHHHHHHHHHh--CCCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCCCcEEEEEcCC
Confidence 46777777532 3456677888888877774 334444444444444455555555554333445568888888754
Q ss_pred ChHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 409 SATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+..++++.|+++||.+.++.. ++++||++. +.++.+.+++.|+++++
T Consensus 303 ~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 303 PDIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR---SAAENERLLAALRNVLT 354 (356)
T ss_pred ChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc---CHHHHHHHHHHHHHHHc
Confidence 567899999999999987631 368999854 77889999999987653
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=241.58 Aligned_cols=341 Identities=15% Similarity=0.152 Sum_probs=220.4
Q ss_pred CCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHhhc--C--CCeEEecCCHHHHH
Q 012368 95 AEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACS--F--ADRVFFSNTGTEAN 168 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~--~--~~~v~~~~sG~eA~ 168 (465)
..|+.+|+|..|.. .++|. .++.+++++.+++.....+. ..+..+.++++++++.+.. + +++|++|+|++|++
T Consensus 143 ~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal 221 (517)
T PRK13355 143 AAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI 221 (517)
T ss_pred HcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence 36788999998754 35664 57789999988775432211 1112233455555554332 2 67999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
.++++++. +++|.|++++|+|..+...+...++..... +...+..+. .|++++++++.++..+
T Consensus 222 ~~~~~~l~-----------~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~----~~~~~~~~~--~d~~~l~~~~~~~~k~ 284 (517)
T PRK13355 222 NLSMSALL-----------DDGDEVLIPSPDYPLWTACVNLAGGTAVHY----RCDEQSEWY--PDIDDIRSKITSRTKA 284 (517)
T ss_pred HHHHHHhC-----------CCCCEEEEcCCCCcCHHHHHHHCCCEEEEe----ecCcccCCC--CCHHHHHHhcCcCceE
Confidence 99988664 268999999999998876554444332211 111111111 2899999999765667
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccccCCccc-----EEEecccCC-Ccc
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHYGIFPD-----IMTLAKPLA-GGL 321 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~~~~pd-----i~t~sK~lg-~G~ 321 (465)
+++++|+|++|. +.+.+.+++|.++|++||++||+||+|..|.+.|.. ..... ..++ +-+|||.++ .||
T Consensus 285 i~i~nP~NPTG~--v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~~~vi~~~S~SK~~~~~G~ 360 (517)
T PRK13355 285 IVIINPNNPTGA--LYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPDLFCVTFSGLSKSHMIAGY 360 (517)
T ss_pred EEEECCCCCCCc--CcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCCCeEEEEecchhhccCccc
Confidence 778888777763 458999999999999999999999999987544421 11111 1123 236899997 499
Q ss_pred ceeeEEeC--HHH----HhhccCCCCcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 322 PIGAALVT--EKV----ASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 322 ~iG~v~~~--~~i----~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
|+||++++ +++ ++.+... ....++.|.+++.++.++|+.... +++.+..++..+. ++.+.+.+.+.+.+..
T Consensus 361 RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~-r~~l~~~L~~~~g~~~ 438 (517)
T PRK13355 361 RIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQ-RELVYNALNAIPGISA 438 (517)
T ss_pred ceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHhcCCCccc
Confidence 99999853 443 3333211 223356778899998888853211 2233332223222 4555555556654555
Q ss_pred eeccceEEE-EEecC------ChHHHHH-HHHHCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 395 VRGLGLIIG-IEFDV------SATPVVD-ACRDSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 395 ~~~~g~~~~-i~~~~------~~~~~~~-~l~~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..+.|.|+. +.++. +..+++. .|.++||.+.|+. ..+++|+++ ..++++|++++++|.+++...+
T Consensus 439 ~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~l~~a~~rl~~~~~~~~ 516 (517)
T PRK13355 439 VKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY--LPRLEDLEDAMDRLADFFSYYR 516 (517)
T ss_pred CCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe--CCCHHHHHHHHHHHHHHHHHhh
Confidence 556666654 46532 2445554 4668899998863 136899976 5789999999999999987654
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=230.84 Aligned_cols=331 Identities=16% Similarity=0.126 Sum_probs=217.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhc-ccccC-CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN-MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~-~~~~~-~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al 172 (465)
.++||..+.+ .+. .+|.+.+++.+.+... ..+.. .+....++.+++++.+.++ .++|++|+|+++|+..++
T Consensus 30 ~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~ 106 (384)
T PRK06348 30 DIIDLSLGDP--DLI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLAL 106 (384)
T ss_pred CcEEcCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHH
Confidence 4688888755 343 4577777666544321 11111 1122345666666655433 789999999999999998
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ 252 (465)
+++.. +++.|++.+|+|.++...+...+...... +...+..+. .|+++|+++++++...++++
T Consensus 107 ~~~~~-----------~gd~vlv~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~~~--~d~~~l~~~~~~~~~~v~l~ 169 (384)
T PRK06348 107 QSILD-----------PGDEVIIHEPYFTPYKDQIEMVGGKPIIL----ETYEEDGFQ--INVKKLEALITSKTKAIILN 169 (384)
T ss_pred HHhcC-----------CCCEEEEeCCCCcchHHHHHHcCCEEEEe----cCCcCcCCc--CCHHHHHHhhCcCccEEEEe
Confidence 87652 68899999999988876555443321111 111100000 27899999887544455566
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc---ccc-cCCcccEEEecccCC-CccceeeEE
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA---HEH-YGIFPDIMTLAKPLA-GGLPIGAAL 327 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~---~~~-~~~~pdi~t~sK~lg-~G~~iG~v~ 327 (465)
+|.|++| ..++.+.+++|.++|++||++||+||+|.+|...+.... ... .+...-+.+|||.++ .|+|+||++
T Consensus 170 ~p~NPtG--~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v 247 (384)
T PRK06348 170 SPNNPTG--AVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVI 247 (384)
T ss_pred CCCCCCC--cCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeee
Confidence 6665554 355899999999999999999999999998743332111 111 112233447999999 699999999
Q ss_pred eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEEe
Q 012368 328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIEF 406 (465)
Q Consensus 328 ~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~~ 406 (465)
+++++++.+.......+++.+++++.++..+|+. .+.+.+++++..+..++.+.+.+...+.+....+. |.++|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~ 325 (384)
T PRK06348 248 APDYIIETAKIINEGICFSAPTISQRAAIYALKH--RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINI 325 (384)
T ss_pred cCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEec
Confidence 9999988876444455678899999999888863 23444444444444344444444444433333343 55667777
Q ss_pred c---CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 407 D---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 407 ~---~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+ .+..++++.|+ +.||.+.|+.. .+++|++++ .+++++++++++|++
T Consensus 326 ~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~ 381 (384)
T PRK06348 326 KKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT--VGIEVLEEAFNRIEK 381 (384)
T ss_pred ccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec--CCHHHHHHHHHHHHh
Confidence 3 35678898887 56999987631 368999864 588999999999865
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=232.72 Aligned_cols=346 Identities=14% Similarity=0.085 Sum_probs=228.5
Q ss_pred EEeCCCCEEEecccCccccc--CCCCCHHHHHHHHHHHhhc--cccc-CCCCCHHHHHHHHHHHhh----------cCCC
Q 012368 92 LYDAEGREYLDLSSGIAVNA--LGHGDADWIKAVVDQANVL--THVS-NMYYSIPQIELAKRLVAC----------SFAD 156 (465)
Q Consensus 92 ~~d~dG~~ylD~~~~~~~~~--lGh~~p~v~~a~~~~~~~~--~~~~-~~~~~~~~~~la~~l~~~----------~~~~ 156 (465)
+.+..|+.+|+|..+.+... +- .++.+.+++.+.+... ..+. ..+..+.++.+++++.+. ...+
T Consensus 27 ~~~~~~~~~i~l~~g~p~~~~~~~-p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~ 105 (412)
T PTZ00433 27 KPSPSPKSIIKLSVGDPTLDGNLL-TPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD 105 (412)
T ss_pred ccCCCCCCeeecCCcCCCCcCCCC-CCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh
Confidence 44467888999999876421 22 5788999998877641 1111 112233455666666543 1268
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHH
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE 236 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 236 (465)
+|++|+|+++|+..+++++.. +++.|++.+|+|+.+...+...+..... .+...+..+ --|++
T Consensus 106 ~i~it~G~~~al~~~~~~~~~-----------~gd~vlv~~P~y~~~~~~~~~~g~~~~~----i~~~~~~~~--~~d~~ 168 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTALCD-----------EGDNILVPAPGFPHYETVCKAYGIEMRF----YNCRPEKDW--EADLD 168 (412)
T ss_pred hEEEeCChHHHHHHHHHHhcC-----------CCCEEEEccCCcccHHHHHHHcCCEEEE----EecCccccC--cCCHH
Confidence 999999999999999986652 6889999999998876554433322111 111111000 02789
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccccC-C--cccEEE
Q 012368 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHYG-I--FPDIMT 312 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~~-~--~pdi~t 312 (465)
+|+++++++...+++++|+|++| ...+.+.+++|.++|++||++||+||+|.+|-+.+.. .....+. . ..-+.+
T Consensus 169 ~l~~~~~~~~~~i~~~~p~NPtG--~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S 246 (412)
T PTZ00433 169 EIRRLVDDRTKALIMTNPSNPCG--SNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGG 246 (412)
T ss_pred HHHHHhccCceEEEEeCCCCCCC--cccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEcc
Confidence 99988875444556667766665 4458899999999999999999999999987444321 1111111 1 122337
Q ss_pred ecccCC-CccceeeEEe------CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 012368 313 LAKPLA-GGLPIGAALV------TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 313 ~sK~lg-~G~~iG~v~~------~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~ 385 (465)
|||.++ .|+|+||+++ .+++++.+.... ..+++.+++++.++.++|... .+.+.+++++..+..++.+.+.
T Consensus 247 fSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~l~~~ 324 (412)
T PTZ00433 247 TAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEGAMVLYNH 324 (412)
T ss_pred chhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 999996 5999999997 245666664321 234578899999988888641 2455666655555555666666
Q ss_pred HHcCCCceeee-ccceEEEEEecC-------ChHHHHHHHH-HCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHH
Q 012368 386 LARNPHVKDVR-GLGLIIGIEFDV-------SATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 386 ~~~~~~~~~~~-~~g~~~~i~~~~-------~~~~~~~~l~-~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
+..+..+.... ..|.|+|+.++. +..++++.|+ ++||.+.++.. .+++|+++. ..++++++++++|
T Consensus 325 L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~al~~l 402 (412)
T PTZ00433 325 IGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS--RPVEVLREAVERI 402 (412)
T ss_pred HhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHH
Confidence 55543333333 347788887742 4578999988 47999988642 478999875 3588999999999
Q ss_pred HHHHHHhh
Q 012368 454 CKTLPVLD 461 (465)
Q Consensus 454 ~~~l~~~~ 461 (465)
.+++++.+
T Consensus 403 ~~~~~~~~ 410 (412)
T PTZ00433 403 KAFCERHK 410 (412)
T ss_pred HHHHHHhc
Confidence 99988655
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=227.48 Aligned_cols=321 Identities=18% Similarity=0.164 Sum_probs=220.7
Q ss_pred CEEEecccCcccccCCCC-CHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAA 171 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~a 171 (465)
+.||.|+++.+ |||+ ||+|++|+.++++++.+... ....+...++++.++++++.+.++++++|++++..+
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~ 77 (349)
T cd06454 1 KKVLNFCSNDY---LGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGV 77 (349)
T ss_pred CCceecccCCc---cccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHH
Confidence 46899999765 9994 99999999999987533211 134566889999999999866678888999999988
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC----CCe
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP----GKT 247 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~----~~~ 247 (465)
++.+.. +++.|++.++.|....... ...+ ..+..++..|.++++++++. .++
T Consensus 78 ~~~~~~-----------~gd~Vl~~~~~~~~~~~~~-~~~g------------~~~~~~~~~~~~~le~~i~~~~~~~~~ 133 (349)
T cd06454 78 LSTLAG-----------KGDLIISDSLNHASIIDGI-RLSG------------AKKRIFKHNDMEDLEKLLREARRPYGK 133 (349)
T ss_pred HHHhcC-----------CCCEEEEehhhhHHHHHHH-HHcC------------CceEEecCCCHHHHHHHHHHhhccCCC
Confidence 875541 5788998888765433221 1111 11223344578888888863 457
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---ccc-cccccCCcccEE--EecccCCCcc
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLW-AHEHYGIFPDIM--TLAKPLAGGL 321 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g---~~~-~~~~~~~~pdi~--t~sK~lg~G~ 321 (465)
++|++++.++.+|...+ +++|.++|++||+++|+||+|. +|..+ ... .........|++ +++|.+++
T Consensus 134 ~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-- 206 (349)
T cd06454 134 KLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-- 206 (349)
T ss_pred eEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhhcc--
Confidence 78888888777787655 8999999999999999999986 33222 111 011111234554 68899975
Q ss_pred ceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc
Q 012368 322 PIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 398 (465)
+.|++++++++++.+.... ...+.+.++..++++.++|+.+.+ +...+++.++.+.+.+.|.++ ..+.. ..+.
T Consensus 207 ~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~--~~~~ 282 (349)
T cd06454 207 VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL--GFPVG--GSPS 282 (349)
T ss_pred cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--CCccc--CCCC
Confidence 5588999999887765422 222335677888888999987654 456677777777777777653 22211 1122
Q ss_pred ceEEEEEec--CChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 399 GLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 399 g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+.+.++.+. ....++.+.|.++||.+.+.+. ++.+|++++...+++++++++++|+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 283 HIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 333333332 3457799999999999976321 368999999889999999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-26 Score=229.90 Aligned_cols=342 Identities=15% Similarity=0.150 Sum_probs=223.6
Q ss_pred CCCEEEecccCcccccC-CCCCHHHHHHHHHHHhhcc-c-c-cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNAL-GHGDADWIKAVVDQANVLT-H-V-SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~l-Gh~~p~v~~a~~~~~~~~~-~-~-~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA 167 (465)
.|+.++++..|.+.... -..++.+++++.+.+.... . + ...+....++++++++.+.++ .++|++|+|+++|
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 108 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQA 108 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHH
Confidence 57789999888764322 2367889999988876521 1 1 111222335566666655433 6799999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT 247 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 247 (465)
+..++.++.. +++.|++.+|+|..+.......+..... .+..+...+ ..|+++++++++++..
T Consensus 109 l~~~~~~l~~-----------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----i~~~~~~~~--~~d~~~l~~~~~~~~~ 171 (409)
T PLN02656 109 IDVALSMLAR-----------PGANILLPRPGFPIYELCAAFRHLEVRY----VDLLPEKGW--EVDLDAVEALADQNTV 171 (409)
T ss_pred HHHHHHHHhC-----------CCCeEEEeCCCCCcHHHHHHHcCCEEEE----EeCCCcCCC--CCCHHHHHHHhccCce
Confidence 9999887652 6899999999997664333222221111 111110000 0278999998876667
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cc---cccCCcccEEEecccCC-Cccc
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH---EHYGIFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~---~~~~~~pdi~t~sK~lg-~G~~ 322 (465)
.+++++|.|++|. ..+.+.+++|.++|++||++||+||+|.+|.+.+..+ .. +.......+.+|||.++ .|+|
T Consensus 172 ~v~l~~P~NPtG~--~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlR 249 (409)
T PLN02656 172 ALVIINPGNPCGN--VYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWR 249 (409)
T ss_pred EEEEECCCCCCCC--CCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCccee
Confidence 7888888776653 4588899999999999999999999999875444221 11 11112223447999977 5999
Q ss_pred eeeEEeC--------HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-
Q 012368 323 IGAALVT--------EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK- 393 (465)
Q Consensus 323 iG~v~~~--------~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~- 393 (465)
+||++++ +++++.+..... ...+.+.+++.++.++|+.. .+.++++.++..+..++.+.+.+..++...
T Consensus 250 iG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~ 327 (409)
T PLN02656 250 LGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVPTILEQT-DESFFKKTINILKQSSDICCDRIKEIPCITC 327 (409)
T ss_pred EEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcC
Confidence 9999983 577777653211 12356788999999888732 234455555444444555555555554322
Q ss_pred e-eeccceEEEEEecC-------ChHHH-HHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 394 D-VRGLGLIIGIEFDV-------SATPV-VDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 394 ~-~~~~g~~~~i~~~~-------~~~~~-~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
. .+..|.++|++++. +..++ .+.|.++||.+.|+. ..+++||++. .+++++++++++|++++.+.
T Consensus 328 ~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~~~~~~~ 404 (409)
T PLN02656 328 PHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEEALGRIKSFYLRH 404 (409)
T ss_pred CcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 1 23346778887731 23344 456678999999873 2468999776 47999999999999988754
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=232.55 Aligned_cols=341 Identities=18% Similarity=0.162 Sum_probs=248.3
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc------ccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCH
Q 012368 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH------VSNMYYSIPQIELAKRLVACSF----ADRVFFSNTG 164 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~------~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG 164 (465)
.+....+||..+.....+ .....+.+++.+.+..... ....+..+.++.+++++....| +++|++|+|.
T Consensus 86 ~~~~~~i~f~~g~p~~~~-fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~ 164 (459)
T COG1167 86 EDDPSVIDFAGGLPDPSL-FPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGA 164 (459)
T ss_pred cCCCceecCCCCCCCccc-CCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCH
Confidence 344678999888743311 1344566666665543211 1112333446677777764444 7799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC----CHHHHHh
Q 012368 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG----NIEATRK 240 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~ 240 (465)
.+|+++++++.. +++|.|++.+|+|++........+-. +..+|.+ |+++|++
T Consensus 165 q~al~l~~~~l~-----------~pGd~v~vE~PtY~~~~~~~~~~g~~-------------~~~vp~d~~G~~~e~le~ 220 (459)
T COG1167 165 QQALDLLLRLLL-----------DPGDTVLVEDPTYPGALQALEALGAR-------------VIPVPVDEDGIDPEALEE 220 (459)
T ss_pred HHHHHHHHHHhC-----------CCCCEEEEcCCCcHHHHHHHHHcCCc-------------EEecCCCCCCCCHHHHHH
Confidence 999999888776 27999999999999887555443311 1112221 7999999
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-c---ccccccCCcccEEEeccc
Q 012368 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-L---WAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~---~~~~~~~~~pdi~t~sK~ 316 (465)
+++.++++++++.|...|+....++.+-.++|.++|++||+++|.||+|..|-..+. . .+.+..+.+..+.||||.
T Consensus 221 ~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~ 300 (459)
T COG1167 221 ALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKT 300 (459)
T ss_pred HHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhh
Confidence 998778999999998666555667999999999999999999999999998855543 2 233444566777899999
Q ss_pred CCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC--Cce-
Q 012368 317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP--HVK- 393 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~- 393 (465)
++.|+|+||+++++++++.+....+..+.+.+.+.|.+....|....-+.+..++++..+.-++.+.+.+.++. ...
T Consensus 301 l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~ 380 (459)
T COG1167 301 LAPGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATW 380 (459)
T ss_pred cccccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeee
Confidence 99999999999999999998776777888889999888887777322245556666666665666666665553 222
Q ss_pred eeeccceEEEEEec--CChHHHHHHHHHCCceEeecCC--------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 394 DVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK--------GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 394 ~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~--------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..+..|+++|++++ .+..++.+.++++||.+.+.+. .+.+|++++.. +++++++++++|.+++++..
T Consensus 381 ~~p~gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~-~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 381 TRPEGGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred ecCCceEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHh
Confidence 23344899999994 3678899999999999988321 24799998855 68899999999999988764
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=229.00 Aligned_cols=318 Identities=17% Similarity=0.135 Sum_probs=217.6
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
+.++++..|.. +++ .+|.+.+++.+.+.... .|+.....+|++.+++.++ +++|++|+|+++++..+++.+
T Consensus 43 ~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~----~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l 115 (370)
T PRK09105 43 EGAVFLNANEC--PLG-PSPAARDAAARSAALSG----RYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF 115 (370)
T ss_pred CCcEEecCCCC--CCC-CCHHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH
Confidence 34667666643 455 67899999988765422 2444447788899998887 889999999999999998866
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEccc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI 255 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~ 255 (465)
.. ++++|++.+|+|.++...+...+.... . .+...+.. .|++++++.. ++...+++++|+
T Consensus 116 ~~-----------~gd~Vli~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~----~d~~~l~~~~-~~~~~v~l~nP~ 175 (370)
T PRK09105 116 TS-----------PTAGLVTADPTYEAGWRAADAQGAPVA-K---VPLRADGA----HDVKAMLAAD-PNAGLIYICNPN 175 (370)
T ss_pred cC-----------CCCEEEEeCCChHHHHHHHHHcCCeEE-E---ecCCCCCC----CCHHHHHhcC-CCCCEEEEeCCC
Confidence 42 688999999999888655443332211 1 11111111 2788887763 334556678887
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccE---EEecccCC-CccceeeEEeCHH
Q 012368 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI---MTLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi---~t~sK~lg-~G~~iG~v~~~~~ 331 (465)
|++|- ..+.+.+++|.+.|+ +++++|+||+|..|+.. . ......+..+++ .+|||.+| .|+|+||++++++
T Consensus 176 NPTG~--~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~-~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~ 250 (370)
T PRK09105 176 NPTGT--VTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA-P-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPD 250 (370)
T ss_pred CCCCc--CcCHHHHHHHHHhCC-CCcEEEEECchHHhccC-c-chHHHHhhCCCEEEEecccHhhcCCccceeeeecCHH
Confidence 76663 458888999988764 59999999999877432 1 111211223343 37899998 5999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+... ..++.+.+++.++.++|+ ++++.++.++..+..++.+.+.+.+++. ...++.|.|++++++.+..
T Consensus 251 ~i~~l~~~---~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~~~~~~f~~~~~~~~~~ 323 (370)
T PRK09105 251 LLAKLARF---GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVREDTIAWLKKKGY-KCTPSQANCFMVDVKRPAK 323 (370)
T ss_pred HHHHHHhc---CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-CcCCCCCcEEEEeCCCCHH
Confidence 99888643 344567778888888776 3455555555555555555555555442 3344667777777655677
Q ss_pred HHHHHHHHCCceEeec--CCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTA--GKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~--~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++++.|.++||.+... +.++++|+++. ++++++++++.|++++
T Consensus 324 ~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 324 AVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 8999999999998422 12478999854 6788999999998765
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=226.47 Aligned_cols=322 Identities=18% Similarity=0.202 Sum_probs=217.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
.+++||..+.. ++| .+|.+.+++.+.+..... |+.....+|+++++++++ .++|++|+|+++++..++++.
T Consensus 19 ~~~~~l~~~~~--~~~-~p~~~~~a~~~~~~~~~~----Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~ 91 (354)
T PRK06358 19 NMILDFSANIN--PLG-VPESLKQAITENLDKLVE----YPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT 91 (354)
T ss_pred cceEEecCCCC--CCC-CCHHHHHHHHHHHHhhhc----CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh
Confidence 45789987653 455 378899999887754322 343345678888888876 789999999999999988853
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEccc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI 255 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~ 255 (465)
. ++.|++.+|+|+.+...+...+.... . .+......+- -| +++.+.+..+...+++++|.
T Consensus 92 ~-------------~~~v~i~~P~y~~~~~~~~~~g~~~~-~---~~~~~~~~~~--~d-~~~~~~~~~~~~~v~~~~P~ 151 (354)
T PRK06358 92 K-------------PKKVLILAPTFAEYERALKAFDAEIE-Y---AELTEETNFA--AN-EIVLEEIKEEIDLVFLCNPN 151 (354)
T ss_pred C-------------CCcEEEecCChHHHHHHHHHcCCeeE-E---EeCccccCCC--cc-HHHHHhhccCCCEEEEeCCC
Confidence 1 35799999999888755433322111 1 1111110000 14 44444454333445678887
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-ccccc---CCcccEEEecccCC-CccceeeEEeC-
Q 012368 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY---GIFPDIMTLAKPLA-GGLPIGAALVT- 329 (465)
Q Consensus 256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~---~~~pdi~t~sK~lg-~G~~iG~v~~~- 329 (465)
|++| ..++.+.+++|.++|++|++++|+||+|.+|...+... ..... +...-+.+|||.++ .|+|+||++++
T Consensus 152 NPtG--~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~ 229 (354)
T PRK06358 152 NPTG--QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN 229 (354)
T ss_pred CCCC--CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCC
Confidence 6666 34589999999999999999999999999885443211 11111 22233457999999 79999999984
Q ss_pred HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC
Q 012368 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS 409 (465)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~ 409 (465)
+.+++.+.... ..++.+.+++.++.++|+ ++.+.++..+..+..++.+.+.+..++.+...++.|.|+++.++ +
T Consensus 230 ~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~~~~~-~ 303 (354)
T PRK06358 230 KNLAEKLLQMR--EPWSINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIFFKLE-K 303 (354)
T ss_pred HHHHHHHHHhC--CCCcchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcceEEEEEcC-c
Confidence 67777775432 357778888998888885 33444444444444455555555555544445567889888874 3
Q ss_pred hHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 410 ATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
..++++.|+++||.+.++.. .+++|++ ..+.++.++++++|++++
T Consensus 304 ~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 304 PIDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL 353 (354)
T ss_pred hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 47899999999999998631 3579997 457889999999998765
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=229.78 Aligned_cols=333 Identities=14% Similarity=0.121 Sum_probs=216.3
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-c-cc-CCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-H-VS-NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~-~~-~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA 167 (465)
.|..++||..|.. .++ .++.+.+++.+.+.... . ++ ..+..+.++++++++.+.++ .+ .|++|+|++++
T Consensus 27 ~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~ 103 (383)
T TIGR03540 27 EGVDVISLGIGDP--DLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEG 103 (383)
T ss_pred cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHH
Confidence 3557788888865 344 46789999988765321 1 11 11122346666666665543 34 69999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT 247 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 247 (465)
+..+++.+. .+++.|++.+|+|+++...+...+...... +...+..+. .|++++++.+.++..
T Consensus 104 l~~~~~~~~-----------~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v----~~~~~~g~~--~d~~~l~~~~~~~~~ 166 (383)
T TIGR03540 104 IAHIPLAFV-----------NPGDIVLVPDPGYPVYRIGTLFAGGEPYEM----PLKEENGFL--PDFDAIPEDIAKKAK 166 (383)
T ss_pred HHHHHHHhC-----------CCCCEEEEeCCCCcchHHHHHhcCCEEEEE----ecCcccCCc--cCHHHHHhhccccce
Confidence 999888654 268999999999988776554443221111 111110010 278899888865333
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccc-cc---cCCcccEEEecccCC-Ccc
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAH-EH---YGIFPDIMTLAKPLA-GGL 321 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~-~~---~~~~pdi~t~sK~lg-~G~ 321 (465)
.+++++|.|++| ..++.+.+++|.++|++||++||+||+|.++...+. .... .. .+....+.+|||.+| .|+
T Consensus 167 ~v~i~~P~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~Gl 244 (383)
T TIGR03540 167 LMFINYPNNPTG--AVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGW 244 (383)
T ss_pred EEEEeCCCCCcC--ccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccc
Confidence 444455765544 456999999999999999999999999987644332 1111 11 122344568999997 699
Q ss_pred ceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cce
Q 012368 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LGL 400 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~ 400 (465)
|+||+++++++++.+.........+.+.+.+.++.++|+.. +++.+++++..+..++.+.+.+.+++ +....+ .|.
T Consensus 245 RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~ 321 (383)
T TIGR03540 245 RIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP--QDVVKEIRKIYQRRRDLLLEALKKIG-IDVEKPKATF 321 (383)
T ss_pred eeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCC-CEecCCCcce
Confidence 99999999999888764322233455667888888887632 34455555544444555555555554 222333 356
Q ss_pred EEEEEec--CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 401 IIGIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 401 ~~~i~~~--~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
++|+.++ .+..++++.|+ ++||.+.++.. .+++||+++ .+++++.+++++|.+
T Consensus 322 ~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 322 YVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT--VPDERLEEAVARIKK 382 (383)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec--CCHHHHHHHHHHHhh
Confidence 6788874 35678898876 68999997621 368999875 568888888888764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=226.39 Aligned_cols=309 Identities=17% Similarity=0.074 Sum_probs=210.1
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKF 174 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~ 174 (465)
.+++||.+|. +++|.+.+.+.. ..+ ..|+... .+|+++|+++++ .++|++++|++|++..+.++
T Consensus 24 ~~~i~ls~Ne--np~~~~~~~~~~---~~~-------~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~ 90 (339)
T PRK06959 24 DAWLDLSTGI--NPHGYPVPPVPA---DAW-------RRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPAL 90 (339)
T ss_pred hhhceeccCC--CCCCCCCCCCCH---HHH-------HhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHh
Confidence 4689999986 578865333321 122 2255554 899999999987 37999999999999865442
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012368 175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 175 a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
. . ++ +|++.+|+|.++...+...+.. +..++.++ +.+++ ....+++++|
T Consensus 91 -~---~--------~g-~v~v~~P~y~~y~~~~~~~g~~-------------~~~v~~~~-~~~~~----~~~~v~l~nP 139 (339)
T PRK06959 91 -L---P--------RG-RVGIAPLAYSEYAPAFARHGHR-------------VVPLDEAA-DTLPA----ALTHLIVVNP 139 (339)
T ss_pred -c---C--------CC-eEEEcCCCcHHHHHHHHHCCCE-------------EEeecccc-hhccc----cCCEEEEeCC
Confidence 2 1 34 4899999998887555433221 12222222 22222 1246889999
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHHHH
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVA 333 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~ 333 (465)
+||+|. ..+.+.+++|.+.|.++++++|+||+|.+|.............-..-+.||||.+| .|+|+||++++++++
T Consensus 140 nNPTG~--~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li 217 (339)
T PRK06959 140 NNPTAE--RLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPALL 217 (339)
T ss_pred CCCCCC--CCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchheEEEecCHHHH
Confidence 877763 45888899999999999999999999998742211111111111223448999999 799999999999999
Q ss_pred hhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHH
Q 012368 334 SAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPV 413 (465)
Q Consensus 334 ~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~ 413 (465)
+.+... ...++.+.+++.++.++|+ +.++.++.++.....++.+.+.+.+++.. +...++|+++.++ +..++
T Consensus 218 ~~l~~~--~~~~~vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~~--~~~~~~f~~~~~~-~~~~l 289 (339)
T PRK06959 218 AALRDA--LGAWTVSGPARHAVRAAFA---DAAWQAAMRERLAADGARLAALLRAHGFA--VHATPLFSWTDDP-RAAAL 289 (339)
T ss_pred HHHHHh--cCCCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHCCCC--ccCcceEEEEeCC-CHHHH
Confidence 988743 3456778899999998886 33444455444444445555555444421 2234677787764 56789
Q ss_pred HHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 414 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 414 ~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+.|.++||+++..+..+++||++ ..+.++++++++.|+++++.+..
T Consensus 290 ~~~l~~~GI~vr~~~~~~~lRisi--~~~~~e~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 290 HAALARRGIWTRYFAPPPSVRFGL--PADEAEWQRLEDALAECVPTLAA 336 (339)
T ss_pred HHHHHhCCeEEEECCCCCeEEEEC--CCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998765456899974 35788999999999998887654
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=226.48 Aligned_cols=330 Identities=15% Similarity=0.059 Sum_probs=213.2
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAAI 172 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~al 172 (465)
+.+||.++.+ .++ .+|++.+++.+.......+.. .+..+.++++++++.+.++ .+ +|++|+|+++|+..++
T Consensus 1 ~~~~~~~g~p--~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~ 77 (350)
T TIGR03537 1 RLFDFGTGDP--KEP-TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred CeEeccCCCC--CCC-CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 3578888765 344 478899999887654222211 1222446667776665544 55 8999999999999887
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
..+.... ++++.|++.+|+|.++...+...+...... +.. .+.. -|++++++++.++...++
T Consensus 78 ~~~~~~g--------~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v----~~~~~~~~~----~d~~~l~~~~~~~~~~i~ 141 (350)
T TIGR03537 78 LVFIDPE--------EDRRRVIFGTPGYPVYERGALFAGGEPTAV----KLKKEDGFL----LRLEKVEKSILEETKIVW 141 (350)
T ss_pred HHHcCCC--------CCCceEEEcCCCCcchHHHHHhcCCEEEEc----ccCcccCCc----cCHHHHHHhhhhccEEEE
Confidence 7554200 023699999999998887665544332211 111 1111 278999998875444444
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccccc--CCcccEEEecccCC-CccceeeEE
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY--GIFPDIMTLAKPLA-GGLPIGAAL 327 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~--~~~pdi~t~sK~lg-~G~~iG~v~ 327 (465)
+++|.|++| ...+.+.+++|.++|++||+++|+||+|..+...+........ +...-+.+|||.++ .|+|+||++
T Consensus 142 i~~p~NPtG--~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~ 219 (350)
T TIGR03537 142 INYPHNPTG--ATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVA 219 (350)
T ss_pred EeCCCCCcC--cccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeee
Confidence 555555554 4468899999999999999999999999865322222111111 11222347899997 599999999
Q ss_pred eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEEe
Q 012368 328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIEF 406 (465)
Q Consensus 328 ~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~~ 406 (465)
+++++++.+.......+.+.+++++.++.+++. .+++.++.++.....++.+.+.+..++. ....+. |.++|+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~~g~-~~~~~~g~~~~~~~~ 295 (350)
T TIGR03537 220 GDEKLISFLRKLRANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNKVGL-EYLYPDATFYLWVKV 295 (350)
T ss_pred cCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHCCC-cccCCCeEEEEEEEC
Confidence 999988877643333344566677777777664 3444444444444444445444444442 222333 55678887
Q ss_pred c--CChHHHHHHHHHCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 407 D--VSATPVVDACRDSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 407 ~--~~~~~~~~~l~~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+ .+..++++.|.++||.+.++. . .+++|+++. .+++++++++++|++
T Consensus 296 ~~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 296 PSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred CCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHhc
Confidence 4 357889999999999998753 1 367999753 578999999998865
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=229.86 Aligned_cols=332 Identities=13% Similarity=0.102 Sum_probs=214.0
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-c-ccC-CCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-H-VSN-MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~-~~~-~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~ 168 (465)
|.+++|+..+.+ .++ .+|.+.+++.+.+.... . ++. .+..+.+.++++++.+.++ .+ .|++|+|+++++
T Consensus 30 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i 106 (385)
T PRK09276 30 GVDVISLGIGDP--DLP-TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGI 106 (385)
T ss_pred CCCEEEecCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 455788888754 233 56789999988775421 1 111 1122346666666665444 44 599999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
..+++.+. .+++.|++.+|+|.++...+...+.... . .+...+..+. .|++++++.+..+...
T Consensus 107 ~~~~~~~~-----------~~gd~Vl~~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~g~~--~d~~~l~~~~~~~~~~ 169 (385)
T PRK09276 107 AHIPLAFV-----------NPGDVVLVPDPGYPVYKIGTIFAGGEPY-F---MPLKEENGFL--PDLDAIPEDVAKKAKL 169 (385)
T ss_pred HHHHHHhC-----------CCCCEEEEcCCCCcChHHHHHHcCCEEE-E---EecCCCCCCc--CCHHHHHHhccccceE
Confidence 99888664 2689999999999877654443332211 1 1111111111 2788998888654444
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc----ccccc-cCCcccEEEecccCC-Cccc
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEH-YGIFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~----~~~~~-~~~~pdi~t~sK~lg-~G~~ 322 (465)
+++++|.|++| ..++.+.+++|.++|++||+++|+||+|..|...+.. ...+. .+....+.+|||.+| .|+|
T Consensus 170 v~l~~p~NPtG--~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlR 247 (385)
T PRK09276 170 MFINYPNNPTG--AVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWR 247 (385)
T ss_pred EEEeCCCCCCC--CCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchh
Confidence 55555766655 3458899999999999999999999999887433321 11111 123345568999997 6999
Q ss_pred eeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cceE
Q 012368 323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LGLI 401 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~ 401 (465)
+||+++++++++.+.........+.+++.+.++.++|+. .+.+.+++++.....++.+.+.+.+.+. ....+ .|.+
T Consensus 248 iG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 324 (385)
T PRK09276 248 IGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDILVEGLRKLGL-EVEPPKATFY 324 (385)
T ss_pred heeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCcceE
Confidence 999999999988876432223334566778887777753 2344455555444445555555554442 22233 3555
Q ss_pred EEEEec--CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 402 IGIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 402 ~~i~~~--~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+++.++ .+..++.+.|+ ++||.+.++.. .+++||+++ .+++++.+++++|.+
T Consensus 325 ~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 325 VWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--VPDERIEEAVERIKK 384 (385)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence 788874 35678888887 57999988631 368999765 478888888888753
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=229.63 Aligned_cols=319 Identities=17% Similarity=0.175 Sum_probs=214.8
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEe-cCCHHHHHHHH
Q 012368 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFF-SNTGTEANEAA 171 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~-~~sG~eA~~~a 171 (465)
.++++++||..|.. ++| .+|.+++++.+.+.... .|+.....++++.++++++ .+++++ ++|+++++..+
T Consensus 31 ~~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~----~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~ 103 (361)
T PRK00950 31 IDPESIIKLGSNEN--PLG-PSPKAVEAIEKELSKIH----RYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTL 103 (361)
T ss_pred CCccceEEccCCCC--CCC-CCHHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHH
Confidence 35678999998754 566 67889999988766532 2333335788888988887 578888 67888888888
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
++.+. .+++.|++.+|+|..+.......+.... . .+...+.. .|++++++.+.++...+++
T Consensus 104 ~~~~~-----------~~gd~vlv~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~----~~~~~l~~~~~~~~~~v~~ 164 (361)
T PRK00950 104 MRTFI-----------DPGDEVIIPTPTFSYYEISAKAHGAKPV-Y---AKREEDFS----LDVDSVLNAITEKTKVIFL 164 (361)
T ss_pred HHHhc-----------CCCCEEEEcCCChHHHHHHHHHcCCEEE-E---eecCCCCC----cCHHHHHHHhccCCCEEEE
Confidence 87654 1578999999999776543332222111 0 01111111 2789999988653344555
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-CccceeeEEeC
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVT 329 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~ 329 (465)
++|.|++ |.+.+ .+++.++|+++|+++|+||+|.+|. .+.... ...++....+.+|||.+| .|+|+||++++
T Consensus 165 ~~p~npt-G~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~ 238 (361)
T PRK00950 165 CTPNNPT-GNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVP 238 (361)
T ss_pred eCCCCCC-CCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCC
Confidence 6665555 44444 5677888899999999999998873 221111 112222233458999998 69999999999
Q ss_pred HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-C
Q 012368 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-V 408 (465)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-~ 408 (465)
+++++.+... ..+++.++++++++.++|+ +.+++++..+.....++.+.+.+. +...+..|.++++.++ .
T Consensus 239 ~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~----~~~~~~~~~~i~~~~~~~ 309 (361)
T PRK00950 239 EWLIDYYMRA--KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP----FKVYPSEANFVLVDVTPM 309 (361)
T ss_pred HHHHHHHHHh--cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC----eeECCCcceEEEEECCCC
Confidence 9998877642 3445677888888888775 345555555555555555544332 2223445778888873 4
Q ss_pred ChHHHHHHHHHCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 409 SATPVVDACRDSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+..++++.|.++||.+.++. ..+++|++++ +.+++++++++|++++
T Consensus 310 ~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 310 TAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred CHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 67889999999999998752 1357999855 7789999999998865
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=230.16 Aligned_cols=338 Identities=16% Similarity=0.117 Sum_probs=221.1
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
+.+++||..+... ++ .+|.+.+++.+.+......+ ..+....+.++++++.+.++ .++|++|+|+++|+..
T Consensus 30 ~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~ 106 (393)
T PRK05764 30 GRDVISLGAGEPD--FD-TPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYN 106 (393)
T ss_pred cCCEEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHH
Confidence 3457888888763 32 57889999988876422111 11112234555555544433 5789999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
++..+.. +++.|++.+|+|.++...+...+...... +..++..+ ..|+++++++++++...++
T Consensus 107 ~~~~~~~-----------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~~--~~d~~~l~~~l~~~~~~v~ 169 (393)
T PRK05764 107 AFMALLD-----------PGDEVIIPAPYWVSYPEMVKLAGGVPVFV----PTGEENGF--KLTVEQLEAAITPKTKALI 169 (393)
T ss_pred HHHHhcC-----------CCCEEEecCCCCcchHHHHHHcCCEEEEE----ecCcccCC--cCCHHHHHHhhCccceEEE
Confidence 8886642 58899999999987754443332211110 11111000 0268999999875444556
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccc-----cccCCcccEEEecccCC-Cccce
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAH-----EHYGIFPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~-----~~~~~~pdi~t~sK~lg-~G~~i 323 (465)
+++|.|++| ...+.+.+++|.++|++||+++|+||+|..+...+.. ... +..+....+.+|||.++ .|+|+
T Consensus 170 ~~~p~NPtG--~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri 247 (393)
T PRK05764 170 LNSPSNPTG--AVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRL 247 (393)
T ss_pred EECCCCCCC--cccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCcccee
Confidence 667766554 3457888999999999999999999999876433321 111 11122233447999999 69999
Q ss_pred eeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc-eEE
Q 012368 324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG-LII 402 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g-~~~ 402 (465)
||+++++++++.+.......+.+.+++++.++.+.|+. .+++.+++++.....++.+.+.+.+++.+....+.| .++
T Consensus 248 G~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~ 325 (393)
T PRK05764 248 GYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYV 325 (393)
T ss_pred EEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEE
Confidence 99999999998886433334557788999888888862 234445555555455555555555554333333444 566
Q ss_pred EEEecC-------ChHHHHHHHH-HCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 403 GIEFDV-------SATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 403 ~i~~~~-------~~~~~~~~l~-~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|+.+.. ...++.+.|+ ++||.+.++.. ++++|+++ .++++++++++++|.+++++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~--~~~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 326 FPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSY--ATSLEDLEEGLERIERFLESL 392 (393)
T ss_pred EEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEe--cCCHHHHHHHHHHHHHHHHhh
Confidence 666632 1367888876 57999987642 37899975 458999999999999998754
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=228.84 Aligned_cols=320 Identities=15% Similarity=0.148 Sum_probs=211.7
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
.+..+||+..|.. ++| .+|.+++++.+. ... ..|+.....+|+++++++++ .++|++|+|+++++..+++
T Consensus 50 ~~~~~i~l~~n~~--p~~-~~~~v~~a~~~~-~~~----~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~ 121 (380)
T PLN03026 50 KPEDIVKLDANEN--PYG-PPPEVLEALGNM-KFP----YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMR 121 (380)
T ss_pred CccceEEccCCCC--CCC-CCHHHHHHHHhh-Hhh----ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHH
Confidence 3567899988754 455 678888887652 111 22444446788899998886 6789999999999999888
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhc-CCCCeEEEEE
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI-QPGKTAAVFV 252 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l-~~~~~a~vi~ 252 (465)
.... ++++|++.+|+|+.+...+...+..... .+...+.. .|++++++++ .++...++++
T Consensus 122 ~~~~-----------~gd~Vlv~~P~y~~y~~~~~~~g~~~~~----v~~~~~~~----~d~~~l~~~~~~~~~~~v~l~ 182 (380)
T PLN03026 122 CVLD-----------PGDKIIDCPPTFGMYVFDAAVNGAEVIK----VPRTPDFS----LDVPRIVEAVETHKPKLLFLT 182 (380)
T ss_pred HhcC-----------CCCEEEEcCCChHHHHHHHHHcCCEEEE----eecCCCCC----cCHHHHHHHHhccCCcEEEEe
Confidence 6542 6889999999997665433322221111 11111111 2789999988 4434455556
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-CccceeeEEeCH
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVTE 330 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~ 330 (465)
+|+|++| .. .+.+.+++|.+. . +++|+||+|.+|...+.... .+.++...-+.||||.+| .|+|+||+++++
T Consensus 183 ~P~NPTG-~~-~~~~~l~~l~~~---~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~ 256 (380)
T PLN03026 183 SPNNPDG-SI-ISDDDLLKILEL---P-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL 256 (380)
T ss_pred CCCCCCC-CC-CCHHHHHHHHhc---C-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCH
Confidence 6666555 33 355555555543 3 89999999988743332111 112222223347999999 699999999999
Q ss_pred HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--C
Q 012368 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--V 408 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~ 408 (465)
++++.+.... ..++.+.+++.++.++|+ +.++.++.++.....++.+.+.+..++.....+..|+|+++.++ .
T Consensus 257 ~~i~~l~~~~--~~~~~~~~~q~aa~~aL~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~~~~~ 331 (380)
T PLN03026 257 SIIEYLWRAK--QPYNVSVAAEVAACAALS---NPKYLEDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRVTSGR 331 (380)
T ss_pred HHHHHHHHhc--CCCCCCHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEECCCCC
Confidence 9998876432 346778889999988886 33444444444444455555555555543334566888888874 3
Q ss_pred ChHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 409 SATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+..++.+.|+++||.+.++.. .+++||++. +.++++++++.|+++
T Consensus 332 ~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 332 DAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred CHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 578899999999999987632 368999754 677888888888653
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=229.53 Aligned_cols=335 Identities=14% Similarity=0.008 Sum_probs=215.5
Q ss_pred eCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHhhcC------C-CeEEecCCHH
Q 012368 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF------A-DRVFFSNTGT 165 (465)
Q Consensus 94 d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~------~-~~v~~~~sG~ 165 (465)
+..|+.++||..|.+ .++ .++.+++++.+.+.....+. ..+..+.++++++++.+.++ . ++|++|+|++
T Consensus 24 ~~~~~~~i~l~~~~p--~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~ 100 (393)
T TIGR03538 24 PPASKPPIALSIGEP--KHP-TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR 100 (393)
T ss_pred hhcCCCeEEecCCCC--CCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence 346788899988865 344 57889999988765422221 12223446667777755532 3 4799999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCce--EEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATE--FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~--ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (465)
+|+..+++++.. +++. |++.+|+|.++...+...+.... . .+...+..+. .|++++++++.
T Consensus 101 ~al~~~~~~l~~-----------~gd~~~vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~--~d~~~l~~~~~ 163 (393)
T TIGR03538 101 EALFAFAQAVIN-----------PGQAPLVVMPNPFYQIYEGAALLAGAEPY-F---LNCTAENGFL--PDFDAVPESVW 163 (393)
T ss_pred HHHHHHHHHHcC-----------CCCcceEEecCCCCcchHHHHHhcCCeEE-E---eeccccCCCC--CCHHHHHHHHh
Confidence 999999987652 4554 99999999887654333322211 1 1111111111 27888988876
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC--cccc----cccc-----CCcccEEE
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWA----HEHY-----GIFPDIMT 312 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g--~~~~----~~~~-----~~~pdi~t 312 (465)
++...+++++|.|++| .+.+.+.+++|.++|++|+++||+||+|..+...+ .... .... +...-+.+
T Consensus 164 ~~~k~i~l~~p~NPtG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S 241 (393)
T TIGR03538 164 RRCQLLFVCSPGNPTG--AVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHS 241 (393)
T ss_pred hcceEEEEeCCCCCcC--cccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEec
Confidence 4444555667766665 35589999999999999999999999998774332 1111 1111 11223447
Q ss_pred ecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012368 313 LAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 313 ~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
|||.++ .|+|+||+++++++++.+.......+++.+++.+.++.+++. .+++.++.++..+..++.+.+.+..+ .
T Consensus 242 ~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~ 317 (393)
T TIGR03538 242 LSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFAAVLEILGQV-L 317 (393)
T ss_pred chhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 999877 599999999999998877643333445678888888877774 33444444433333333333333332 1
Q ss_pred ceeeeccceEEEEEecCChHHHHHHHH-HCCceEeecCC-----------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 392 VKDVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGK-----------GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~-----------~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
....+..|.++|++++.+..++++.|+ ++||.+.|+.. .+++||++. .+++++++++++|.++
T Consensus 318 ~~~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~--~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 318 DLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALV--APLEECVEAAERIRSF 392 (393)
T ss_pred cccCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEec--CCHHHHHHHHHHHHHh
Confidence 112345588888888645677888886 57999976531 257888654 4789999999999764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=228.21 Aligned_cols=338 Identities=16% Similarity=0.067 Sum_probs=225.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
|.+++|+..+.+. ++ .+|.+.+++.+.+.+... ....+..+.++++++++.+.++ .++|++|+|+++|+..
T Consensus 32 ~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~ 108 (402)
T PRK06107 32 GRSIVDLTVGEPD--FD-TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL 108 (402)
T ss_pred cCCEEEcCCCCCC--CC-CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 4457888887653 33 478899999988764221 1112233457788888877655 6789999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
+++... .+++.|++.+|+|.++.......++..... +...+..+. -|++++++.+.++..+++
T Consensus 109 ~~~~~~-----------~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v----~~~~~~~~~--~~~~~l~~~~~~~~~~v~ 171 (402)
T PRK06107 109 ALMATL-----------EAGDEVIIPAPYWVSYPDMVLANDGTPVIV----ACPEEQGFK--LTPEALEAAITPRTRWLI 171 (402)
T ss_pred HHHHhc-----------CCCCEEEEecCCCcCHHHHHHHcCCEEEEe----cCCcccCCC--CCHHHHHhhcCcCceEEE
Confidence 987543 268899999999887754443332221111 111110110 267899999875555666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCCCCCCcc-ccccc--cCCccc---EEEecccCC-Cccc
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDA-GALLVFDEVQCGLGRTGYL-WAHEH--YGIFPD---IMTLAKPLA-GGLP 322 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~gr~g~~-~~~~~--~~~~pd---i~t~sK~lg-~G~~ 322 (465)
++.|.|++| ..++.+.+++|.++|++| ++++|+||+|..+...+.. ..... .+.... +.+|||.++ .|+|
T Consensus 172 l~~p~NPtG--~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR 249 (402)
T PRK06107 172 LNAPSNPTG--AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWR 249 (402)
T ss_pred EECCCCCCC--cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccc
Confidence 777766665 456889999999999998 9999999999876444421 11111 111122 336799998 6999
Q ss_pred eeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cceE
Q 012368 323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LGLI 401 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~ 401 (465)
+||+++++++++.+.......+++.+.+++.++..+|+. .+.+.++.++..+..++.+.+.+++++.+....+ .|.+
T Consensus 250 iG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~ 327 (402)
T PRK06107 250 IGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFY 327 (402)
T ss_pred eeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceE
Confidence 999999999998887654445677889999999888862 2344455444444444555555555543333333 4566
Q ss_pred EEEEec-------------CChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 402 IGIEFD-------------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 402 ~~i~~~-------------~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+|+.++ .+..+++..|+ ++||.+.|+. ..+++|+++. .+++++++++++|.+.++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 328 LYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEEACARIERAVAAL 401 (402)
T ss_pred EeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHhc
Confidence 677652 13456776665 6899999873 2468999776 47999999999999998765
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=228.02 Aligned_cols=326 Identities=15% Similarity=0.116 Sum_probs=214.9
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC----HHHHHHHHHHHhhc------CCCeEEecCCHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS----IPQIELAKRLVACS------FADRVFFSNTGTEA 167 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~----~~~~~la~~l~~~~------~~~~v~~~~sG~eA 167 (465)
..++|+..|.. +++ .+|.+++++.+.+...... ..|+. ..++++++++.+.+ ..++|++|+|++++
T Consensus 28 ~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~-~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~a 103 (374)
T PRK02610 28 IQLDRLDTNEF--PYD-LPPDLKQKLAWLYQQGIES-NRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDEL 103 (374)
T ss_pred cceeEecCCCC--CCC-CCHHHHHHHHHHHhhcccc-cCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHH
Confidence 45889988865 455 6788999999876652110 11222 23445555554432 25789999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCC-
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQP- 244 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~- 244 (465)
+..++..... ++ +.|++.+|+|.++...+...+...... +...+ .. -|+++|+++++.
T Consensus 104 l~~~~~~~~~-----------~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~----~~~~~~~~----~d~~~l~~~~~~~ 164 (374)
T PRK02610 104 IRSLLIATCL-----------GGEGSILVAEPTFSMYGILAQTLGIPVVRV----GRDPETFE----IDLAAAQSAIEQT 164 (374)
T ss_pred HHHHHHHHcC-----------CCCCeEEEcCCChHHHHHHHHHcCCEEEEe----cCCcccCC----CCHHHHHHHHHhh
Confidence 9877765431 34 479999999988876554443222111 11111 11 278999988863
Q ss_pred --CCeEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-Cc
Q 012368 245 --GKTAAV-FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 245 --~~~a~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G 320 (465)
+++++| +++|.||+| ...+++.+++|.++| ++++||+||+|..|.............-..-+.+|||.+| .|
T Consensus 165 ~~~~~k~i~l~~P~NPTG--~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~G 240 (374)
T PRK02610 165 QNPPVRVVFVVHPNSPTG--NPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAA 240 (374)
T ss_pred cCCCceEEEEeCCCCCCC--CCCCHHHHHHHHhcc--CCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcc
Confidence 345555 456655554 345888899999887 4999999999998742211111111111122458999997 59
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccce
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~ 400 (465)
+|+||+++++++++.+.... ..++.+.+++.++.++|+.. +.+.+++++..+. ++.+.+.+..++.+...+..|.
T Consensus 241 lRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~p~~g~ 315 (374)
T PRK02610 241 HRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQE-RDRLYQALQELPQLRVWPSAAN 315 (374)
T ss_pred cceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHH-HHHHHHHHHhCCCcEeCCCcce
Confidence 99999999999998886432 34667888999888888632 3445555554443 4445555555544444456688
Q ss_pred EEEEEec--CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 401 IIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 401 ~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|+|+.++ .+..++++.|.++||.+.+.. +++||++. +.+++++++++|++++.++
T Consensus 316 f~~~~l~~~~~~~~~~~~l~~~gi~v~~~~--~~lRls~~---~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 316 FLYLRLSQDAALAALHQALKAQGTLVRHTG--GGLRITIG---TPEENQRTLERLQAALTQL 372 (374)
T ss_pred EEEEeCCCCCCHHHHHHHHHHCCEEEEeCC--CeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence 8888874 356789999999999998643 67999754 4577999999999988765
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=228.00 Aligned_cols=327 Identities=17% Similarity=0.144 Sum_probs=212.8
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhccc-c-cCCCCCHHHHHHHHHHHhhcCC-----CeEEecCCHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-V-SNMYYSIPQIELAKRLVACSFA-----DRVFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~~-----~~v~~~~sG~eA~~~a 171 (465)
.+|||..|.+ .++ .+|.+.+++.+.+..... + ...+..+.++++++++++.++. ++|++|+|+++|+..+
T Consensus 30 ~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~ 106 (384)
T PRK12414 30 DALNLSQGAP--NFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAA 106 (384)
T ss_pred CeEEcCCCCC--CCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHH
Confidence 4688888765 344 578899999887654211 1 1122234477888888777662 4799999999999998
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
++... .++++|++.+|+|.++...+...+.... . .+... +.. -|++.|+++++++...++
T Consensus 107 ~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---v~~~~~~~~----~d~~~l~~~l~~~~~~v~ 167 (384)
T PRK12414 107 ISALV-----------HPGDEVIYFEPSFDSYAPIVRLQGATPV-A---IKLSPEDFR----VNWDEVAAAITPRTRMII 167 (384)
T ss_pred HHHhc-----------CCCCEEEEeCCCccchHHHHHHcCCEEE-E---EecCccccc----cCHHHHHhhcCcccEEEE
Confidence 88664 2689999999999776544433322111 0 11111 111 278999999975444455
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cc-cccC---CcccEEEecccCC-Ccccee
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-EHYG---IFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~-~~~~---~~pdi~t~sK~lg-~G~~iG 324 (465)
+++|+|++| . .++++.+++|.++|++||+++|+||+|..|...+... .. ...+ ...-+.+|||.++ .|+|+|
T Consensus 168 i~~p~NPTG-~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG 245 (384)
T PRK12414 168 VNTPHNPSA-T-VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVG 245 (384)
T ss_pred EcCCCCCCC-c-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEE
Confidence 555655554 3 4588999999999999999999999998864444211 11 1112 1223447999998 699999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc-eEEE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG-LIIG 403 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g-~~~~ 403 (465)
|+++++++++.+.......+++.+.+++.++.++|+. .....++++..+..++.+.+.+.+++ +...++.| .++|
T Consensus 246 ~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~gg~~~~ 321 (384)
T PRK12414 246 YCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAE---PASYLGLGAFYQRKRDLLARELAGSR-FELLPSEGSFFML 321 (384)
T ss_pred EEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCCcceEEE
Confidence 9999999988886544445677888999998888752 22222233333333344444444444 22333444 5556
Q ss_pred EEec----CChHHHHH-HHHHCCceEeecC-----C--CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 404 IEFD----VSATPVVD-ACRDSGLLVLTAG-----K--GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 404 i~~~----~~~~~~~~-~l~~~Gv~v~~~~-----~--~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+.++ ....+++. .|.++||.+.|+. . .+++||+++ .+++++++++++|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 322 ARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS 383 (384)
T ss_pred EcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 5663 23456664 4567899998863 1 367999776 368999999999864
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=225.69 Aligned_cols=336 Identities=13% Similarity=0.110 Sum_probs=221.1
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~a 171 (465)
++|+..|... +. .++.+.+|+.+.+.... +....+..+.+.++++++++.++ .++|++|+|+++++..+
T Consensus 29 ~~~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~ 105 (389)
T PRK05957 29 TISLGQGVVS--YP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA 105 (389)
T ss_pred eEEccCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH
Confidence 5777776653 33 56789999988765432 11122233457788888887765 45799999999999888
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
++.... +++.|++.+|+|..+.......+....+ .+...+.. -|+++++++++++...+++
T Consensus 106 ~~~~~~-----------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~----v~~~~~~~----~d~~~l~~~i~~~~klv~~ 166 (389)
T PRK05957 106 ILAITD-----------PGDEIILNTPYYFNHEMAITMAGCQPIL----VPTDDNYQ----LQPEAIEQAITPKTRAIVT 166 (389)
T ss_pred HHHhcC-----------CCCEEEEeCCCCcCHHHHHHhcCCEEEE----eecCCCCC----cCHHHHHHhcCcCceEEEE
Confidence 876541 6889999999997765433322221111 11111111 2789999999754445555
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cc-cc---ccCCcccEEEecccCC-Cccceee
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WA-HE---HYGIFPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~-~~---~~~~~pdi~t~sK~lg-~G~~iG~ 325 (465)
+.|.|++| ...+.+.+++|.++|++||+++|+||+|.+|...+.. .. .. .......+.+|||.+| .|+|+||
T Consensus 167 ~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 244 (389)
T PRK05957 167 ISPNNPTG--VVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGY 244 (389)
T ss_pred eCCCCCCC--cCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEE
Confidence 66655554 3458889999999999999999999999987443321 11 11 1112234557999998 6999999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc-eeeec-cceEEE
Q 012368 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV-KDVRG-LGLIIG 403 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~-~g~~~~ 403 (465)
+++++++++.+.........+.+.+++.++..+|+. .+++.++..+.....++.+.+.+...+.+ ...++ .|.++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~ 322 (389)
T PRK05957 245 MVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQV--GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCF 322 (389)
T ss_pred EecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEE
Confidence 999999998887543333445667888888887762 12344444333344444444444444322 22223 366778
Q ss_pred EEec--CChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 404 IEFD--VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 404 i~~~--~~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
+.+. .+..++++.|+ ++||.+.|+. . ++++|++++. .+++++++++++|.+.++++-+
T Consensus 323 ~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~~~~~ 388 (389)
T PRK05957 323 LKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLKTIVQ 388 (389)
T ss_pred EeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHHhhhc
Confidence 8773 45778999987 5899999863 1 3589998754 4788999999999999887543
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=206.65 Aligned_cols=336 Identities=18% Similarity=0.210 Sum_probs=240.2
Q ss_pred ceEEEeeeccEEEeCCC--CEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccCC-----CCCHHHHHHHHHHHhh
Q 012368 81 PVVLASGKGCKLYDAEG--REYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSNM-----YYSIPQIELAKRLVAC 152 (465)
Q Consensus 81 p~~~~~~~G~~~~d~dG--~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~~-----~~~~~~~~la~~l~~~ 152 (465)
.-++++.+|..+. ++| +.+|.|+.|.+ ||. +||+|.+|-.+++++++.+... +....+..|+.+|+++
T Consensus 49 erVi~s~q~p~i~-v~G~~k~ilnFcaNnY---LGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqf 124 (417)
T KOG1359|consen 49 ERVITSRQGPTIQ-VKGSDKKILNFCANNY---LGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQF 124 (417)
T ss_pred eeEEeecccceEE-Eeccccceeeeccccc---ccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHH
Confidence 3567788888775 455 57999999766 886 9999999999999986543221 2455688999999999
Q ss_pred cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC
Q 012368 153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 153 ~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
++.|+.++.+++..||..++.+.+. |.+ -|..+.-.|.+....+.+.. .| .+
T Consensus 125 h~rED~ilypscfdANag~feail~-----------ped-AvfSDeLNhASIIdGirLck--ry--------------~h 176 (417)
T KOG1359|consen 125 HGREDTILYPSCFDANAGAFEAILT-----------PED-AVFSDELNHASIIDGIRLCK--RY--------------RH 176 (417)
T ss_pred hCCCceEEeccccccchHHHHHhcC-----------hhh-hhhccccccchhhhhhHHHh--hh--------------cc
Confidence 9999999999999999999987762 333 44455566777665554432 11 11
Q ss_pred CCHHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCccccccccCC-
Q 012368 233 GNIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI- 306 (465)
Q Consensus 233 ~d~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~g~~~~~~~~~~- 306 (465)
-|+..++..+. +.+..+|..+.++++.|.+.| |++|.+|+++||.+|++||.|. | ||.+|.+ .-+.+++
T Consensus 177 ~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGrG-t~E~~~vm 251 (417)
T KOG1359|consen 177 VDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGRG-TAEEFGVM 251 (417)
T ss_pred chhHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCCC-hHHHhCCC
Confidence 25556665543 457889999999999999988 9999999999999999999975 3 3555544 4556665
Q ss_pred -cccEE--EecccCCCccceeeEEeCHHHHhhccCCCCcCCCC--ChHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHH
Q 012368 307 -FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFA--GSPLVCNAAIAVLDKI-SNPAFLASVSKKGHYFKE 380 (465)
Q Consensus 307 -~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~--~~~~~~~aa~a~L~~~-~~~~~~~~~~~~~~~l~~ 380 (465)
.+|++ |+||++|| --.||..+++.+++.++......-|+ .+|.....+.++++.+ ......++.+.+.+++++
T Consensus 252 ~~vdiinsTLgKAlGg-a~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~ 330 (417)
T KOG1359|consen 252 GDVDIINSTLGKALGG-ASGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFRE 330 (417)
T ss_pred CcceehhhhhhhhhcC-CCCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56776 79999985 23388899999999887544333333 3444445555666654 346677888889999988
Q ss_pred HHHHHHHcCCCceeeecc-ceEEEEEec--CChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGL-GLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~-g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
.++.. .+. +.+. -.+..+.+. ..+.++.++|+++|++|..... ...+|+.++.+||+||||++++
T Consensus 331 ~me~a--Gft----Isg~~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~ 404 (417)
T KOG1359|consen 331 FMEAA--GFT----ISGASHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIE 404 (417)
T ss_pred HHHhc--Cce----ecCCCCCccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHH
Confidence 87653 111 1110 122223331 3466789999999999863211 2569999999999999999999
Q ss_pred HHHHHHHHh
Q 012368 452 ILCKTLPVL 460 (465)
Q Consensus 452 ~l~~~l~~~ 460 (465)
++.++.+.+
T Consensus 405 Af~~vgr~~ 413 (417)
T KOG1359|consen 405 AFSEVGRFL 413 (417)
T ss_pred HHHHHHHhh
Confidence 999887654
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=230.64 Aligned_cols=341 Identities=14% Similarity=0.068 Sum_probs=214.2
Q ss_pred CCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
|+.++++..|.+.. .+. .++.+.+++.+.+.... +....+..+.++.+++++.+..+ +++|++|+|+++|+
T Consensus 31 g~~~~~~~~G~p~~-~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al 109 (433)
T PRK06855 31 GVKITWENIGDPIA-KGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI 109 (433)
T ss_pred cccccccccCCCcc-cCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHH
Confidence 34455555443311 233 56678888888764421 11122233457777777766544 77999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--C
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--G 245 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~ 245 (465)
..++. +. ++++.|++.+|+|+++...... .+.... . .+..+...+. .|+++|+++++. .
T Consensus 110 ~~~~~-l~-----------~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v-~---v~~~~~~~~~--~d~~~l~~~~~~~~~ 171 (433)
T PRK06855 110 AKIYG-LL-----------RREARVIGPSPAYSTHSSAEAAHAGYPPV-T---YRLDPENNWY--PDLDDLENKVKYNPS 171 (433)
T ss_pred HHHHH-hc-----------CCCCeEEEeCCCCchHHHHHHHhcCCeEE-E---EecccccCCC--CCHHHHHHHHhcCCC
Confidence 88875 22 1689999999999986533221 121111 0 1111111110 288999999862 2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccc-ccc-C-CcccEEEecccCC-Cc
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAH-EHY-G-IFPDIMTLAKPLA-GG 320 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~-~~~-~-~~pdi~t~sK~lg-~G 320 (465)
..++++++|.||+| .+++.+.+++|.++|++||++||+||+|.++.+.+.. ... ... + ...-+.+|||.++ .|
T Consensus 172 ~~~i~l~~P~NPTG--~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pG 249 (433)
T PRK06855 172 IAGILLINPDNPTG--AVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPG 249 (433)
T ss_pred ceEEEEECCCCCCC--cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCc
Confidence 35567788877766 4568999999999999999999999999987544421 111 111 1 1233457999998 69
Q ss_pred cceeeEEeC-----H---HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 321 LPIGAALVT-----E---KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 321 ~~iG~v~~~-----~---~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
+|+||++++ + .+++.+.... ....+.+.++|.++.++|+...-+++.+++++..+..++.+.+.+.+++.+
T Consensus 250 lRiG~ii~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~ 328 (433)
T PRK06855 250 SRCGWIEVYNADKDEVFKKYINSILNAK-MIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGL 328 (433)
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHhh-ccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 999999973 2 2334332211 123456788999988888632113455555555555555555656555433
Q ss_pred eeeecc-ceEEEEEecC-----------------------------ChHHHHHH-HHHCCceEeecCC----CCEEEEec
Q 012368 393 KDVRGL-GLIIGIEFDV-----------------------------SATPVVDA-CRDSGLLVLTAGK----GNVVRLVP 437 (465)
Q Consensus 393 ~~~~~~-g~~~~i~~~~-----------------------------~~~~~~~~-l~~~Gv~v~~~~~----~~~lRi~~ 437 (465)
...++. |.++|+.++. +..+++.. +.++||.+.|+.. +..+|+++
T Consensus 329 ~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~ 408 (433)
T PRK06855 329 KVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTL 408 (433)
T ss_pred eccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEE
Confidence 333343 5777887742 13455644 5578999998731 24589877
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHh
Q 012368 438 PLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 438 ~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+. .++++|++++++|.+++++.
T Consensus 409 ~~-~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 409 LE-RDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred CC-CcHHHHHHHHHHHHHHHHHH
Confidence 64 48999999999999998764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=226.43 Aligned_cols=322 Identities=15% Similarity=0.143 Sum_probs=212.1
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF 174 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~ 174 (465)
++.+|||..+.. +++ .+|.+.+++.+.+.... ..|+.....+|++.++++++ +++|++|+|+++|+..+++.
T Consensus 23 ~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~---~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~ 96 (353)
T PRK05387 23 LAKLIKLNTNEN--PYP-PSPKVLEAIRAALGDDL---RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLA 96 (353)
T ss_pred ccceeeccCCCC--CCC-CCHHHHHHHHHHhhhhh---hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHH
Confidence 356899998865 455 47889999988776421 22333334678888888876 78899999999999999987
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012368 175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 175 a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
+.. +++.|++.+|+|..+.......+.... . .+...+.. -|++++++. ...+++++|
T Consensus 97 l~~-----------~gd~vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~----~d~~~l~~~----~~~v~~~~P 153 (353)
T PRK05387 97 FFN-----------HDRPLLFPDITYSFYPVYAGLYGIPYE-E---IPLDDDFS----IDVEDYLRP----NGGIIFPNP 153 (353)
T ss_pred hcC-----------CCCEEEEeCCCHHHHHHHHHHcCCEEE-E---eecCCCCC----CCHHHHHhc----CCEEEEeCC
Confidence 652 689999999999666543322221111 1 11111111 267777642 345677888
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHHHH
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVA 333 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~ 333 (465)
.|++|.+ .+.+.+++|.+.++ ++++|+||+|..|+........+..+...-+.+|||.++ .|+|+||++++++++
T Consensus 154 ~NPtG~~--~~~~~~~~l~~~~~--~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~ 229 (353)
T PRK05387 154 NAPTGIA--LPLAEIERILAANP--DSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELI 229 (353)
T ss_pred CCCCCCC--CCHHHHHHHHHhCC--CcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHH
Confidence 7777643 46666777666543 999999999987742211111122222223347999999 699999999999998
Q ss_pred hhccCCCC-cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-CChH
Q 012368 334 SAINYGDH-GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-VSAT 411 (465)
Q Consensus 334 ~~~~~~~~-~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~ 411 (465)
+.+..... ..+++.+.+++.++.++|+ +.++.++.++.....++.+.+.+.+++. ...++.|.++++.++ .+..
T Consensus 230 ~~l~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~~~~~ 305 (353)
T PRK05387 230 EALNRVKNSFNSYPLDRLAQAGAIAAIE---DEAYFEETRAKVIATRERLVEELEALGF-EVLPSKANFVFARHPSHDAA 305 (353)
T ss_pred HHHHHhhccCCCCCcCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-eECCCcCcEEEEECCCCCHH
Confidence 88764322 2356778889988888875 2333333333333334444444444443 233455777787764 4677
Q ss_pred HHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
++++.|.++||.+.+.+. .+++|++++ +.+++++++++|++++.
T Consensus 306 ~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 306 ELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 899999999999976532 368999764 67899999999998764
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=226.50 Aligned_cols=317 Identities=20% Similarity=0.235 Sum_probs=210.2
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
.+.|||+.+.. +++ .+|++++++.+++..... |+.....++++.++++++ .++|++++|+++++..+++.+
T Consensus 19 ~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~----y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l 91 (346)
T TIGR01141 19 KEVIKLNSNEN--PFG-PPPKAKEALRAEADKLHR----YPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF 91 (346)
T ss_pred CceEEccCCCC--CCC-CCHHHHHHHHHhHHHhhc----CCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh
Confidence 47999998765 455 578999999988654322 222224678888888876 678999999999998888765
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEccc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI 255 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~ 255 (465)
.. ++++|++.+|+|..+.......+.... . .+...+. ..|++++++++.+ ++++|+++..
T Consensus 92 ~~-----------~gd~v~~~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~----~~d~~~l~~~~~~-~~~~v~l~~p 151 (346)
T TIGR01141 92 LE-----------PGDAVLVPPPTYSMYEISAKIHGAEVV-K---VPLDEDG----QLDLEDILVAIDD-KPKLVFLCSP 151 (346)
T ss_pred cC-----------CCCEEEEcCCCHHHHHHHHHHcCCeEE-E---eccCCCC----CCCHHHHHHhcCC-CCCEEEEeCC
Confidence 41 578999999998654432222221111 0 1111111 1388999998765 3455554433
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE---EecccCC-CccceeeEEeCHH
Q 012368 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM---TLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~~~~ 331 (465)
++.+|.. .+.+.++++.+.|+ +|+++|+||+|.++...+... ......++++ ++||.++ .|+|+||++++++
T Consensus 152 ~NptG~~-~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~ 227 (346)
T TIGR01141 152 NNPTGNL-LSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAE 227 (346)
T ss_pred CCCCCCC-CCHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchhhhceeeecCHH
Confidence 3444544 46666666666665 699999999998774322211 1111123333 6899997 4899999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+... ..+++.+++++.++.++++.. ++.++.++.....++.+.+.+++++.+...+..|.+++++++.+..
T Consensus 228 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~ 302 (346)
T TIGR01141 228 IIDALNKV--RAPFNLSRLAQAAAIAALRDD---DFIEKTVEEINAERERLYDGLKKLPGLEVYPSDANFVLIRFPRDAD 302 (346)
T ss_pred HHHHHHhc--cCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHHHhcCCCEECCCcCCEEEEecCCCHH
Confidence 98888643 235677889999888877632 2344444444444444444444454333444567888888744678
Q ss_pred HHHHHHHHCCceEeecCC----CCEEEEecCCCCcHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK----GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~----~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
++.+.|.++||.+.++.. ++++|++++ ++++++++++.|
T Consensus 303 ~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l 345 (346)
T TIGR01141 303 ALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAAL 345 (346)
T ss_pred HHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHh
Confidence 899999999999988642 478999854 789999998876
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=226.87 Aligned_cols=332 Identities=14% Similarity=0.085 Sum_probs=211.5
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~ 168 (465)
|..++||..+.+ .+..++.+.+++.+.+.... +....+..+.++++++++.+.++ .+ .|++|+|+++|+
T Consensus 34 g~~~i~l~~g~p---~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al 110 (394)
T PRK05942 34 GLDLIDLGMGNP---DGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGL 110 (394)
T ss_pred CCCeEEcCCCCC---CCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHH
Confidence 556789987644 33355668888777664321 11111122346666666655444 55 589999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
..++..+. .++++|++.+|+|.++...+...+..... .+...+..+ ..|++++++.+.++...
T Consensus 111 ~~~~~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~----v~~~~~~~~--~~d~~~l~~~~~~~~k~ 173 (394)
T PRK05942 111 THLALAYV-----------NPGDVVLVPSPAYPAHFRGPLIAGAQIYP----IILKPENDW--LIDLSSIPEEVAQQAKI 173 (394)
T ss_pred HHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHHcCCEEEE----eecCCccCC--ccCHHHHHHhccccceE
Confidence 99888654 26899999999998876544333221110 111111100 02789999888754344
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-ccc---cc-ccCCcccEEEecccCC-Cccc
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWA---HE-HYGIFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~---~~-~~~~~pdi~t~sK~lg-~G~~ 322 (465)
+++++|.|++| ..++.+.+++|.++|++||+++|+||+|..|...+. ... .. ..+....+.+|||.++ .|+|
T Consensus 174 i~l~~P~NPtG--~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlR 251 (394)
T PRK05942 174 LYFNYPSNPTT--ATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWR 251 (394)
T ss_pred EEEcCCCCCCC--CcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhh
Confidence 44455766665 446889999999999999999999999987744332 111 11 1123344568999997 6999
Q ss_pred eeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cceE
Q 012368 323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LGLI 401 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~ 401 (465)
+||+++++++++.+........++.+.+++.++.++|+.. +.+.+++++..+..++.+.+.+...+. ...++ .|.+
T Consensus 252 iG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~~~f 328 (394)
T PRK05942 252 VGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLP--DSYLQQVQERYRTRRDFLIQGLGELGW-NIPPTKATMY 328 (394)
T ss_pred eeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCC-eecCCCeeeE
Confidence 9999999999988875433345667778888888888632 334444444444444444444444442 22333 3557
Q ss_pred EEEEec--CChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 402 IGIEFD--VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 402 ~~i~~~--~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+|+.++ .+..++...++ ++||.+.++. ..+++|++++ .+.+.+.+++++|.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~ 388 (394)
T PRK05942 329 LWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLKQ 388 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 888874 34567777654 7899998752 1368999875 456777777777754
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=224.72 Aligned_cols=320 Identities=15% Similarity=0.087 Sum_probs=207.3
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~ 170 (465)
++..++||..+.+ ....+|.+++++.+......+....+....++.+++++.+.++ .++|++|+|+++++..
T Consensus 25 ~~~~~i~l~~~~p---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~ 101 (364)
T PRK07865 25 HPDGIVDLSVGTP---VDPVPPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAW 101 (364)
T ss_pred cCCCEEEcCCCCC---CCCCCHHHHHHHHHHHhhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHH
Confidence 3345788887754 2334678888887765432222122223447778888776533 6799999999999988
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
++.++. . .+++.|++.+|+|.++...+...+ ...++++++++++. .++++|
T Consensus 102 ~~~~l~--~--------~~gd~Vl~~~p~y~~~~~~~~~~g---------------~~~~~~~~~~~l~~----~~~~~v 152 (364)
T PRK07865 102 LPTLLG--L--------GPGDVVVIPELAYPTYEVGARLAG---------------ATVVRADSLTELGP----QRPALI 152 (364)
T ss_pred HHHHHc--C--------CCCCEEEECCCCcccHHHHHHhcC---------------CEEEecCChhhCCc----ccceEE
Confidence 766541 1 168899999999987754433222 11222234444432 244555
Q ss_pred EE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccc------cCCcccEEEecccCC-Ccc
Q 012368 251 FV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEH------YGIFPDIMTLAKPLA-GGL 321 (465)
Q Consensus 251 i~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~------~~~~pdi~t~sK~lg-~G~ 321 (465)
++ +|.|++| .+.+.+.+++|.++|++||++||+||+|.++...+.... ... .+...-+.+|||.++ .|+
T Consensus 153 ~~~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 230 (364)
T PRK07865 153 WLNSPSNPTG--RVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGY 230 (364)
T ss_pred EEcCCCCCCC--ccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCce
Confidence 54 4555544 345889999999999999999999999998754443211 111 011222447999997 599
Q ss_pred ceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012368 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
|+||+++++++++.+........++.+++.+.++.++|+ ++++.++.++.....++.+.+.+.+++.....+..|.+
T Consensus 231 RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 307 (364)
T PRK07865 231 RAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARRRAVLRPALEAAGFRVDHSEAGLY 307 (364)
T ss_pred eeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCccEE
Confidence 999999999998887643334456678888888877775 33444444444444455555555554422122233556
Q ss_pred EEEEecCChHHHHHHHHHCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 402 IGIEFDVSATPVVDACRDSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 402 ~~i~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+|+.++....++.+.|.++||.+.|+. ..+++||+++. +++++++++++|.
T Consensus 308 ~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~~~~~~l~ 363 (364)
T PRK07865 308 LWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA--TDERIAAAVERLA 363 (364)
T ss_pred EEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC--CHHHHHHHHHHhh
Confidence 777765556778889999999998753 13689997653 6899999999885
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=228.31 Aligned_cols=340 Identities=12% Similarity=0.090 Sum_probs=218.3
Q ss_pred CCEEEecccCcccc--cCCCCCHHHHHHHHHHHhhccc--c-cCCCCCHHHHHHHHHHHhhc---CCCeEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVN--ALGHGDADWIKAVVDQANVLTH--V-SNMYYSIPQIELAKRLVACS---FADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~--~lGh~~p~v~~a~~~~~~~~~~--~-~~~~~~~~~~~la~~l~~~~---~~~~v~~~~sG~eA~ 168 (465)
|+.++++..+.+.. .++ .++.+.+++.+.+..... + ...+..+.++++++++.+.. ..++|++|+|+++|+
T Consensus 30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al 108 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAI 108 (401)
T ss_pred CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHH
Confidence 45778888876532 244 568899999887765211 1 11111222444555444321 267899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
..+++++.. +++.|++.+|+|..+...+...+..... .+...+..+ --|++.+++.++.+...
T Consensus 109 ~~~~~~l~~-----------~gd~v~i~~P~y~~~~~~~~~~g~~v~~----~~~~~~~~~--~~d~~~l~~~~~~~~~~ 171 (401)
T TIGR01264 109 EMCIAALAN-----------AGQNILVPRPGFPLYETLAESMGIEVKL----YNLLPDKSW--EIDLKQLESLIDEKTAA 171 (401)
T ss_pred HHHHHHhCC-----------CCCEEEEeCCCChhHHHHHHHcCCEEEE----eecCCccCC--CCCHHHHHHHhccCceE
Confidence 999886652 6889999999998776444333321111 011111000 02789999888754445
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccc-cccCC--cccEEEecccCC-Cccce
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAH-EHYGI--FPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~-~~~~~--~pdi~t~sK~lg-~G~~i 323 (465)
+++++|.|++|. ..+.+.+++|.++|+++|+++|+||+|.+|.+.+.. ... ..... ..-+.+|||.++ .|+|+
T Consensus 172 v~~~~p~NPtG~--~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi 249 (401)
T TIGR01264 172 LIVNNPSNPCGS--VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRL 249 (401)
T ss_pred EEEcCCCCCCCC--CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceE
Confidence 556677666653 458899999999999999999999999987544421 111 11111 122347999977 59999
Q ss_pred eeEEeCH------HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-eee
Q 012368 324 GAALVTE------KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-DVR 396 (465)
Q Consensus 324 G~v~~~~------~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~ 396 (465)
||+++++ ++++.+.... ...++.+++++.++.++|+.. .++++++.++.....++.+.+.+..++.+. ..+
T Consensus 250 G~iv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p 327 (401)
T TIGR01264 250 GWIIIHDRRGILRDIRDGLVKLS-QRILGPCTIVQGALPSILLRT-PQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMP 327 (401)
T ss_pred EEEEecCcchhHHHHHHHHHHHh-hccCCCCcHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 9999873 3444443211 124566888999988888642 245555555555555555555555554333 235
Q ss_pred ccceEEEEEecC-------ChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 397 GLGLIIGIEFDV-------SATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 397 ~~g~~~~i~~~~-------~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..|+|+|+.++. +..++++.|+ ++||.+.|+. ..+++|+++. .+++++++++++|.++++++
T Consensus 328 ~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 328 SGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLT--VPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred CeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEc--CCHHHHHHHHHHHHHHHhcc
Confidence 568888988631 3567888886 7899998864 2478999765 46899999999999988653
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=227.94 Aligned_cols=337 Identities=16% Similarity=0.112 Sum_probs=219.6
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhccc-c-cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-V-SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al 172 (465)
.++||..+.+ .++ .++.+.+++.+.+..... + ...+....++++++++.+.++ .++|++|+|+++|+..++
T Consensus 34 ~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~ 110 (391)
T PRK08361 34 NVISLGIGEP--DFD-TPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAF 110 (391)
T ss_pred CeEEcCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHH
Confidence 4688888765 344 367888998887654211 1 111222334555555544333 679999999999999988
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ 252 (465)
+.+.. +++.|++.+|+|.++...+...+. .... .+...+..+ ..|++++++.++++...++++
T Consensus 111 ~~l~~-----------~g~~Vlv~~p~y~~~~~~~~~~g~-~~~~---v~~~~~~~~--~~d~~~l~~~i~~~~~~v~i~ 173 (391)
T PRK08361 111 ESLLE-----------EGDEVIIPDPAFVCYVEDAKIAEA-KPIR---IPLREENEF--QPDPDELLELITKRTRMIVIN 173 (391)
T ss_pred HHhcC-----------CCCEEEEcCCCCcccHHHHHHcCC-EEEE---EecCCccCC--CCCHHHHHHhcccccEEEEEe
Confidence 86641 688999999999877643332221 1111 111111000 037899999997654555666
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-ccccccc--CCcccEEEecccCC-CccceeeEEe
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHY--GIFPDIMTLAKPLA-GGLPIGAALV 328 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~--~~~pdi~t~sK~lg-~G~~iG~v~~ 328 (465)
.|.|++| . ..+.+.+++|.++|+++++++|+||+|.+|...+. ....... +...-+.+|||.+| .|+|+||+++
T Consensus 174 ~p~NPtG-~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~ 251 (391)
T PRK08361 174 YPNNPTG-A-TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIA 251 (391)
T ss_pred CCCCCCC-c-CcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhcc
Confidence 6766554 3 45888899999999999999999999987743322 1111111 11222347899998 6999999999
Q ss_pred CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEEec
Q 012368 329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIEFD 407 (465)
Q Consensus 329 ~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~~~ 407 (465)
++++++.+.......+++.+.+.+.++..+|+.....++.++.++..+..++.+.+.++.++.+....+. |.++|+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~ 331 (391)
T PRK08361 252 PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANID 331 (391)
T ss_pred CHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECC
Confidence 9998887754323345667888888888888642222345555555555555555555555444434444 456777773
Q ss_pred ---CChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 408 ---VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 408 ---~~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+..++.+.|+ ++||.+.|+. . .+++|+++. .+++++++++++|.+++++
T Consensus 332 ~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 332 ETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKEKLIEAMERMEKALEE 390 (391)
T ss_pred CCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 35778888887 4799998753 1 368999765 4788999999999988864
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=226.03 Aligned_cols=322 Identities=18% Similarity=0.129 Sum_probs=214.1
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--C-CeEEecCCHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A-DRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~-~~v~~~~sG~eA~~~al~ 173 (465)
++.++|+..|.. +++ .+|.+++++.+.+..... ..|+.....+|++.++++++ . ++|++++|+++++..+++
T Consensus 25 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 25 ATGMVKLDAMEN--PYR-LPAELRAELGERLAEVAL--NRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CCCceeCcCCCC--CCC-CCHHHHHHHHHHhhcccc--ccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 467888877744 565 678999999988764211 22333335678888888876 2 489999999999999888
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE-EE
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV-FV 252 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v-i~ 252 (465)
++.. +++.|++.+|+|.++...+...+..... .+...+.. .|++++++++...++++| ++
T Consensus 100 ~~~~-----------~gd~vlv~~P~y~~~~~~~~~~g~~~~~----i~~~~~~~----~d~~~l~~~~~~~~~~~v~l~ 160 (356)
T PRK04870 100 ACAK-----------PGATVLAPEPGFVMYRMSAKLAGLEFVG----VPLTADFT----LDLPAMLAAIAEHRPALVFLA 160 (356)
T ss_pred HhcC-----------CCCEEEECCCCHHHHHHHHHHcCCEEEE----ecCCCCCC----CCHHHHHHHhhcCCCCEEEEc
Confidence 6642 6899999999998876544333322111 12111111 278999999864344444 55
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCC-ccceeeEEeCHH
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEK 331 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~ 331 (465)
+|.|++| ...+.+.+++|.++| ++++|+||+|..|...........++....+.+||| ++. |+|+||++++++
T Consensus 161 ~p~NPtG--~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~ 234 (356)
T PRK04870 161 YPNNPTG--NLFDDADVERIIEAA---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPA 234 (356)
T ss_pred CCCCCCC--CCCCHHHHHHHHHHC---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHH
Confidence 5765554 345788888888888 789999999988743211111122222233457999 764 999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+.... ..++.+.+++.++..+++. .+..++..+.....++.+.+.+...+.+...+..|.++++.++ +..
T Consensus 235 ~i~~~~~~~--~~~~~~~~~q~~a~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (356)
T PRK04870 235 WIAELDKVR--PPYNVNVLTQATALFALEH---VDVLDAQAAQLRAERTRLAAALAALPGVTVFPSAANFILVRVP-DAA 308 (356)
T ss_pred HHHHHHHcc--CCCcCCHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEECC-CHH
Confidence 998886432 3456788888888877763 2223333333333344444444444433444566788888875 567
Q ss_pred HHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++.+.|.++||.+.++.. .+++|++++ +.+++++++++|++++
T Consensus 309 ~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 309 AVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAAL 356 (356)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence 889999999999987531 368999755 7889999999998753
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=226.02 Aligned_cols=340 Identities=13% Similarity=0.102 Sum_probs=218.8
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhc---ccccCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL---THVSNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA 167 (465)
.|..++||..+.+. +..++.+.+++.+.+... .+....+....+..+++++.+.++ .+ +|++|+|+++|
T Consensus 31 ~~~~~~~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 31 AGEDIIDFSMGNPD---GPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred cCCCEEEcCCcCCC---CCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 45567888877543 334566777777665431 111112223346777777766544 45 79999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHH----HHHhhcC
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE----ATRKLIQ 243 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~le~~l~ 243 (465)
+..++++.. .+++.|++.+|+|.++...+...+...... +. ....+.. -|++ .++++++
T Consensus 108 l~~~~~~l~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v-~~-~~~~~~~----~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 108 YVHLVQAIT-----------NPGDVAIVPDPAYPIHSQAFILAGGNVHKM-PL-EYNEDFE----LDEDQFFENLEKALR 170 (403)
T ss_pred HHHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHhcCCEEEEE-ec-cccccCc----cChhhhhhHHHHHHh
Confidence 999998665 268999999999988876554443221110 00 0001111 1333 5566664
Q ss_pred C--CCeE-EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc----cccccc-CCcccEEEecc
Q 012368 244 P--GKTA-AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEHY-GIFPDIMTLAK 315 (465)
Q Consensus 244 ~--~~~a-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~----~~~~~~-~~~pdi~t~sK 315 (465)
. .++. .+++.|.||+| ..++.+.+++|.++|++|+++||+||+|..+-..+.. ...+.. +....+.+|||
T Consensus 171 ~~~~~~~~i~~~~P~NPTG--~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK 248 (403)
T PRK08636 171 ESSPKPKYVVVNFPHNPTT--ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSK 248 (403)
T ss_pred hccCCceEEEEeCCCCCCC--ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEeccc
Confidence 2 2344 44555677666 3458999999999999999999999999987433321 111111 22223447999
Q ss_pred cCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 316 PLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 316 ~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
.++ .|+|+||+++++++++.+........++.+.+.+.++..+++. .+.+.+++++.....++.+.+.+...+....
T Consensus 249 ~~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 326 (403)
T PRK08636 249 SYNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIESFANAGWELQ 326 (403)
T ss_pred ccCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 997 6999999999999988876433323455666777777666642 2445555555555555555555555443222
Q ss_pred eeccceEEEEEecC-----ChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 395 VRGLGLIIGIEFDV-----SATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 395 ~~~~g~~~~i~~~~-----~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+..|.++|+.++. +..+++..++ ++||.+.|+. . .+++||++. .+++++++++++|.++++.++
T Consensus 327 ~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~~~ 402 (403)
T PRK08636 327 KPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKELE 402 (403)
T ss_pred CCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhhc
Confidence 34468888888842 2467887765 6899998862 1 368999775 589999999999999987643
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=224.00 Aligned_cols=340 Identities=16% Similarity=0.087 Sum_probs=218.6
Q ss_pred CCCEEEecccCcccc-cCCCCCHHHHHHHHHHHhhccc-c-cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012368 96 EGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTH-V-SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 96 dG~~ylD~~~~~~~~-~lGh~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
+|..++|+..+.+.. .++ .+|.+.+++.+.+..... + ...+..+.++.+++++.+.++ .++|++|+|+++|+
T Consensus 28 ~~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 106 (398)
T PRK08363 28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEAL 106 (398)
T ss_pred cCCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 467899999988642 454 578899999887764311 1 111222334555555544333 67899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEeeCCCHHHHHhhcCCCCe
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFVEYGNIEATRKLIQPGKT 247 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~ 247 (465)
..+++.+. ++++.|++.+|+|.++...+...+...... .+.. .+.. .|++++++++.++..
T Consensus 107 ~~~~~~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~---~~~~~~~~~----~d~~~l~~~~~~~~~ 168 (398)
T PRK08363 107 QLIFGALL-----------DPGDEILIPGPSYPPYTGLVKFYGGVPVEY---RTIEEEGWQ----PDIDDIRKKITEKTK 168 (398)
T ss_pred HHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHHcCCEEEEe---ccccccCCc----CCHHHHHhhCCcceE
Confidence 99988664 268999999999988875544433222111 0111 1111 278899998875445
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccC---CcccEEEecccCC-Cccce
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG---IFPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~---~~pdi~t~sK~lg-~G~~i 323 (465)
.+++++|.|++| ...+.+.+++|.++|++||+++|+||+|.++...+......... ...-+.+|||.++ .|+|+
T Consensus 169 ~v~l~~p~NPtG--~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi 246 (398)
T PRK08363 169 AIAVINPNNPTG--ALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRL 246 (398)
T ss_pred EEEEECCCCCCC--cCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceE
Confidence 566667766655 34588899999999999999999999998764333221111111 1122347999976 59999
Q ss_pred eeEEe--CHHHHhhccCC---CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc
Q 012368 324 GAALV--TEKVASAINYG---DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398 (465)
Q Consensus 324 G~v~~--~~~i~~~~~~~---~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 398 (465)
||+++ ++++++.+... .....++.+.+++.++.++|+. .+++.++.++.....++.+.+.+.+++.+....+.
T Consensus 247 G~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~ 324 (398)
T PRK08363 247 GYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQ 324 (398)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCC
Confidence 99997 66655544321 1123467788899998888863 24455555554455555555555555444333444
Q ss_pred ceE-EEEEecC----ChHHHH-HHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 399 GLI-IGIEFDV----SATPVV-DACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 399 g~~-~~i~~~~----~~~~~~-~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|.| +|+.++. ...+++ +.|.++||.+.++.. .+++|+++. .+++++++++++|.+++.+.
T Consensus 325 g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~~ 395 (398)
T PRK08363 325 GAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL--PPVEILEEAMDRFEEFMRER 395 (398)
T ss_pred eEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 554 4446632 345565 445789999987631 368999763 57899999999999988653
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=223.14 Aligned_cols=319 Identities=17% Similarity=0.094 Sum_probs=206.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~ 170 (465)
++.+++|+.++.+. ...+|.+.+++.+......+....+..+.++++++++.+.++ .++|++|+|+++++..
T Consensus 19 ~~~~~i~l~~~~p~---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~ 95 (357)
T TIGR03539 19 HPDGIVDLSVGTPV---DPVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW 95 (357)
T ss_pred CCCCeEEccCCCCC---CCCCHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH
Confidence 44567899887542 235688888887765432222222233446777777766533 5899999999999998
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
+++++. . .+++.|++.+|+|.++...+...+. ..++.+|++.++ ..++++|
T Consensus 96 ~~~~l~--~--------~~gd~Vl~~~p~y~~~~~~~~~~g~---------------~~~~v~~~~~l~----~~~~~~v 146 (357)
T TIGR03539 96 LPTLLG--L--------GPGDTVVIPELAYPTYEVGALLAGA---------------TPVAADDPTELD----PVGPDLI 146 (357)
T ss_pred HHHHHc--C--------CCCCEEEECCCCcHHHHHHHHhcCC---------------EEeccCChhhcC----ccCccEE
Confidence 777542 1 1689999999999877644332221 112223444432 2244555
Q ss_pred EE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccc------cCCcccEEEecccCC-Ccc
Q 012368 251 FV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEH------YGIFPDIMTLAKPLA-GGL 321 (465)
Q Consensus 251 i~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~------~~~~pdi~t~sK~lg-~G~ 321 (465)
++ +|.|++| ...+.+.+++|.++|++||+++|+||+|.+|.+.+.... ... .....-+.+|||.++ .|+
T Consensus 147 ~~~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~ 224 (357)
T TIGR03539 147 WLNSPGNPTG--RVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGY 224 (357)
T ss_pred EEeCCCCCcC--ccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCce
Confidence 54 5555554 345889999999999999999999999987754443211 110 111122337999996 599
Q ss_pred ceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012368 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
|+||+++++++++.+........++.+.+++.++.++|+ ++.+.++.++..+..++.+.+.+.+.+.....+..|.+
T Consensus 225 R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~~~~~ 301 (357)
T TIGR03539 225 RAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLY 301 (357)
T ss_pred eEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCccEE
Confidence 999999999998887643334456778888888887775 33334444444444444444444444422122223556
Q ss_pred EEEEecCChHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHH
Q 012368 402 IGIEFDVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 402 ~~i~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
+|+.++.+..++.+.|.++||.+.|+.. .+++|++++. +++++++++++|
T Consensus 302 ~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~~i~~~~~~l 356 (357)
T TIGR03539 302 LWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA--TDERIAAAVARL 356 (357)
T ss_pred EEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC--CHHHHHHHHHhh
Confidence 6776655667788999999999988631 3689998754 688999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=225.33 Aligned_cols=332 Identities=17% Similarity=0.142 Sum_probs=218.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~a 171 (465)
..+||..+.+. ++ .+|.+.+++.+.+......+. .+..+.++.+++++.+.++ ++ +|++|+|+++|+..+
T Consensus 27 ~~i~l~~g~p~--~~-~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 103 (387)
T PRK08912 27 GAINLGQGFPD--DP-GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAA 103 (387)
T ss_pred CeEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHH
Confidence 46888888764 33 467888888877653211111 1122345666666655444 55 899999999999888
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
+..... +++.|++.+|+|.++...+...+..... .+... +.. -|++++++.+.++...++
T Consensus 104 ~~~~~~-----------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----~~~~~~~~~----~~~~~l~~~~~~~~~~v~ 164 (387)
T PRK08912 104 LLALVE-----------PGDEVVLFQPLYDAYLPLIRRAGGVPRL----VRLEPPHWR----LPRAALAAAFSPRTKAVL 164 (387)
T ss_pred HHHhcC-----------CCCEEEEeCCCchhhHHHHHHcCCEEEE----EecCcccCc----CCHHHHHHHhCccceEEE
Confidence 886541 6889999999998776544333322111 11111 111 278999998875445666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc--cccccC---CcccEEEecccCC-Ccccee
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHEHYG---IFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~--~~~~~~---~~pdi~t~sK~lg-~G~~iG 324 (465)
+++|.|++| ...+.+.+++|.++|++|++++|+||+|..+...+... .....+ ...-+.+|||.++ .|+|+|
T Consensus 165 l~~p~NPtG--~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG 242 (387)
T PRK08912 165 LNNPLNPAG--KVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVG 242 (387)
T ss_pred EeCCCCCcC--cccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeE
Confidence 677766665 34588999999999999999999999998764333211 111112 2223447899999 799999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIG 403 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~ 403 (465)
|+++++++++.+........++.++..+.++.++|.. .+++.+++++..+..++.+.+.+..++. ....+. |.++|
T Consensus 243 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~g~~~l~ 319 (387)
T PRK08912 243 FVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGK--PDDYFEGMRADLARSRDRLAAGLRRIGF-PVLPSQGTYFLT 319 (387)
T ss_pred EEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCcceEEE
Confidence 9999999998876443344566777778887777752 3444445555444445555555544442 223333 55677
Q ss_pred EEec-----CChHHHHHHHH-HCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 404 IEFD-----VSATPVVDACR-DSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 404 i~~~-----~~~~~~~~~l~-~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.++ .+..++++.|+ ++||.+.|+. ..+++|++++. +++++++++++|.+++++
T Consensus 320 ~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~--~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 320 VDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK--RDATLDEAVERLAAARRR 386 (387)
T ss_pred ecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 7763 24667898886 5799998853 13689997664 689999999999988753
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=225.21 Aligned_cols=329 Identities=13% Similarity=0.025 Sum_probs=214.3
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
.|+.++||..|.+. ++ .++.+.+++.+.......+.. .+....++++++++.+.++ .++|++|+|+++|+..
T Consensus 22 ~~~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~ 98 (374)
T PRK05839 22 KEYKGLDLTIGEPQ--FE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN 98 (374)
T ss_pred CCCCeEEcCCCCCC--CC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence 37899999998763 55 467888888776543222211 1223446777777777654 7899999999999988
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
+++++.. . ++++.|++.+|+|..+...+...+..... .+...+..+. .|+++. .+. +...++
T Consensus 99 ~~~~~~~-~--------~~gd~vlv~~P~y~~~~~~~~~~g~~v~~----v~~~~~~~~~--~d~~~~--~~~-~~k~v~ 160 (374)
T PRK05839 99 FPQFVLF-D--------KQNPTIAYPNPFYQIYEGAAIASRAKVLL----MPLTKENDFT--PSLNEK--ELQ-EVDLVI 160 (374)
T ss_pred HHHHHhc-C--------CCCCEEEECCCCchhhHHHHHhcCCEEEE----eecccccCCc--CCcchh--hhc-cccEEE
Confidence 8776541 0 14788999999998887655443322111 1111111110 022222 232 234556
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-c--------ccCCcccEEEecccCC-Cc
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-E--------HYGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~--------~~~~~pdi~t~sK~lg-~G 320 (465)
+++|+||+|. ..+.+.+++|.++|++||++||+||+|..|...+..... . .++...-+.+|||.++ .|
T Consensus 161 i~nP~NPTG~--~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G 238 (374)
T PRK05839 161 LNSPNNPTGR--TLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPG 238 (374)
T ss_pred EeCCCCCcCc--ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcc
Confidence 6677777763 458899999999999999999999999987322221111 1 1122233447999987 59
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccce
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~ 400 (465)
+|+||+++++++++.+........++.+.+.+.++.+++. ++++.+++++.....++.+.+.+ +.. .+..|.
T Consensus 239 lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~gg~ 310 (374)
T PRK05839 239 LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLAREIL---GIT--IPPATF 310 (374)
T ss_pred ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHhc---CCC--CCCeeE
Confidence 9999999999998887543333345667778888777664 34455555544444444444433 221 345588
Q ss_pred EEEEEecCChHHHHHHHHH-CCceEeecCC-------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 401 IIGIEFDVSATPVVDACRD-SGLLVLTAGK-------GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 401 ~~~i~~~~~~~~~~~~l~~-~Gv~v~~~~~-------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
|+|+.++ +..++++.|++ +||.+.|+.. .+++|++++ .+++++.+++++|.++++
T Consensus 311 fi~~~~~-~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 311 YVWLPVD-NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV--YDTPKLEKALEIIKTYLE 373 (374)
T ss_pred EEEEeCC-ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhh
Confidence 8888874 45778889875 9999998521 378999764 479999999999998874
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=225.01 Aligned_cols=333 Identities=14% Similarity=0.113 Sum_probs=216.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~a 171 (465)
..++||..+... ++ .+|.+.+++.+.+......+ ..+..+.++.+++++.+.++ +++|++|+|+++|+..+
T Consensus 30 ~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~ 106 (388)
T PRK07337 30 RDIIHMGIGEPD--FT-APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLA 106 (388)
T ss_pred CCEEEeCCcCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHH
Confidence 346777776543 33 46889999988775421111 11222345666666655444 67899999999999988
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
+.... .+++.|++.+|+|.++...+...+..... .+......+ .-|++++++.+.++...+++
T Consensus 107 ~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----~~~~~~~~~--~~~~~~l~~~~~~~~~~v~l 169 (388)
T PRK07337 107 CLALV-----------ERGDEVLMPDPSYPCNRHFVAAAEGRPVL----VPSGPAERF--QLTAADVEAAWGERTRGVLL 169 (388)
T ss_pred HHHhc-----------CCCCEEEEeCCCchhhHHHHHHcCCEEEE----eecCCccCC--cCCHHHHHhhcCccceEEEE
Confidence 88654 16899999999998775444333322111 111111100 02789999999765666777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccE---EEecccCC-CccceeeEE
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI---MTLAKPLA-GGLPIGAAL 327 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi---~t~sK~lg-~G~~iG~v~ 327 (465)
+.|.|++| ...+.+.+++|.++|++|++++|+||+|.++...+..... ....+++ .+|||.++ .|+|+||++
T Consensus 170 ~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~~G~RiG~~~ 245 (388)
T PRK07337 170 ASPSNPTG--TSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA--LSLGDDVITINSFSKYFNMTGWRLGWLV 245 (388)
T ss_pred ECCCCCCC--cCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh--hhccCCEEEEEechhhcCCchhheeeee
Confidence 77877665 4458899999999999999999999999987554431111 1122333 37899997 599999999
Q ss_pred eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-eeeccceEEEEEe
Q 012368 328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-DVRGLGLIIGIEF 406 (465)
Q Consensus 328 ~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~i~~ 406 (465)
+++++++.+.........+.+++++.++.++++... .+.+++.++..+..++.+.+.+..++... ..+..|.++|+++
T Consensus 246 ~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~ 324 (388)
T PRK07337 246 VPEALVGTFEKLAQNLFICASALAQHAALACFEPDT-LAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADC 324 (388)
T ss_pred cCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEec
Confidence 999998887643333345678888888887775211 12223333333333444444444444322 2344578899988
Q ss_pred c-------CChHHHHHHHH-HCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 407 D-------VSATPVVDACR-DSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 407 ~-------~~~~~~~~~l~-~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+ .+..+++..|+ ++||.+.|+.. .+++|++++. +++++++++++|.+++
T Consensus 325 ~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~--~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 325 RGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT--SMSRLEEAVARLGKLF 387 (388)
T ss_pred ccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC--CHHHHHHHHHHHHHHh
Confidence 4 24667887755 68999987521 3689998764 6899999999998765
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=225.60 Aligned_cols=336 Identities=16% Similarity=0.133 Sum_probs=219.0
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--c-cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--V-SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~-~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
.|..++||.++... +. .++.+.+++.+.+..... + ...+..+.++++++++.+..+ .++|++|+|+++|+
T Consensus 27 ~~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 103 (386)
T PRK07550 27 ADGPLIDLSQAVPG--YP-PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAF 103 (386)
T ss_pred cCCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 35567899988753 22 467788888877643111 1 111223336677777766544 68999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
..+++++.. ++++|++.+|+|.++...+...+..... .+...+.... .|+++++++++.+..+
T Consensus 104 ~~~~~~l~~-----------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~--~~~~~l~~~~~~~~~~ 166 (386)
T PRK07550 104 WAAMVTLAG-----------AGDEVILPLPWYFNHKMWLDMLGIRPVY----LPCDEGPGLL--PDPAAAEALITPRTRA 166 (386)
T ss_pred HHHHHHhcC-----------CCCEEEEcCCCCcchHHHHHhcCCEEEE----EecCCCcCCC--CCHHHHHHHhcccCcE
Confidence 988887642 6899999999997775433322211110 1111111000 2788999999865556
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cc-cccc---cCCcccEEEecccCC-Cccc
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LW-AHEH---YGIFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~-~~~~---~~~~pdi~t~sK~lg-~G~~ 322 (465)
++++.|.|++| . .++.+.+++|.++|++||+++|+||+|.+|...+. .. .... ......+.+|||.++ .|+|
T Consensus 167 v~~~~P~NPtG-~-~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R 244 (386)
T PRK07550 167 IALVTPNNPTG-V-VYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHR 244 (386)
T ss_pred EEEeCCCCCCC-c-ccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccc
Confidence 67778876554 3 45889999999999999999999999988732221 11 1111 112233558999998 6999
Q ss_pred eeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEE
Q 012368 323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~ 402 (465)
+||+++++++++.+.......+.+.+.+++.++..+|+.+ +++.++.++..+..++.+.+.+..++.+...+..|.++
T Consensus 245 iG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~ 322 (386)
T PRK07550 245 VGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNL--ADWRAGNRAEIARRRDAFRAVFARLPGWELLASGAYFA 322 (386)
T ss_pred eEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHHHhCCCceeCCCceEEE
Confidence 9999999998887765444455667888888888877632 33444444433344444444444443222223446677
Q ss_pred EEEec---CChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 403 GIEFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 403 ~i~~~---~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
|+.++ .+..+++..|+ ++||.+.|+. .++++||+++. .+++++++++++|.++
T Consensus 323 ~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 323 YVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred EecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence 77763 35778998876 5799998853 13689998864 4689999999999764
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=222.47 Aligned_cols=334 Identities=16% Similarity=0.061 Sum_probs=215.0
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEA 170 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~ 170 (465)
..++|+..+.+. ++ .++.+.+++.+.+...... ...+....++++++++.+.++ .+ +|++|+|+++|+..
T Consensus 28 ~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 28 DNLISLTIGQPD--FP-TPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CCeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 456888877542 33 4678899999887652211 112223345666666654433 55 89999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
+++.+.. +++.|++.+|+|+++.......+....+. +.. .+.. -|.+++++.+.++...+
T Consensus 105 ~~~~l~~-----------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~~----~~~~~l~~~~~~~~~~i 165 (387)
T PRK07683 105 AFRTILE-----------PGTEVILPAPIYPGYEPIIRLCGAKPVFI----DTRSTGFR----LTAEALENAITEKTRCV 165 (387)
T ss_pred HHHHhCC-----------CCCEEEEcCCCccchHHHHHHcCCEEEEe----ecCcccCC----CCHHHHHHhcCcCceEE
Confidence 8886541 58899999999988765554433221111 111 1111 16788999887544455
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccC---CcccEEEecccCC-Ccccee
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYG---IFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~---~~pdi~t~sK~lg-~G~~iG 324 (465)
++++|+|++| ..++.+.+++|.++|+++|+++|+||+|..+...+.... ....+ ...-+.+|||.++ .|+|+|
T Consensus 166 ~i~~p~NPtG--~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG 243 (387)
T PRK07683 166 VLPYPSNPTG--VTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIG 243 (387)
T ss_pred EEeCCCCCCC--cCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeE
Confidence 5666666655 345889999999999999999999999998743332111 11112 1223447999999 799999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i 404 (465)
|+++++++++.+.........+.+.+++.++.+.|+.. +.+.+++++..+..++.+.+.+.+.+.....+..|.++|+
T Consensus 244 ~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 321 (387)
T PRK07683 244 FLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAG--KDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLFP 321 (387)
T ss_pred EEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEEEE
Confidence 99999999888764322223445678888888888632 2334444444444444444444444322222333556666
Q ss_pred Eec---CChHHHHHHH-HHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 405 EFD---VSATPVVDAC-RDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 405 ~~~---~~~~~~~~~l-~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+. .+..+++..| .++||.+.|+.. ++++||++. .+++++.+++++|.+++.+
T Consensus 322 ~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~--~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 322 SIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA--YSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred ecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 553 2455677664 578999988631 368999765 4799999999999998864
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=223.13 Aligned_cols=330 Identities=15% Similarity=0.126 Sum_probs=215.3
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~eA~~~a 171 (465)
.++||..|... ++ .+|.+.+++.+.++..... ...+..+.++++++++.+.++ . ++|++|+|+++|+..+
T Consensus 31 ~~i~l~~g~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~ 107 (386)
T PRK09082 31 GAINLSQGFPD--FD-GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAA 107 (386)
T ss_pred CEEEecCCCCC--CC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHH
Confidence 46888887553 33 4788999998877643221 112233447778888877665 2 3799999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
++... .+++.|++.+|+|.++.......+.... . .+..... + ..|++++++.++++..++++
T Consensus 108 ~~~~~-----------~~gd~Vli~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~-~--~~d~~~l~~~~~~~~~~v~l 169 (386)
T PRK09082 108 ILALV-----------RPGDEVIVFDPSYDSYAPAIELAGGRAV-R---VALQPPD-F--RVDWQRFAAAISPRTRLIIL 169 (386)
T ss_pred HHHHc-----------CCCCEEEEeCCCchhhHHHHHHcCCEEE-E---EecCccc-c--cCCHHHHHHhcCccceEEEE
Confidence 88664 2689999999999877644433322111 1 1111100 0 02789999999754344455
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc--ccccccCC---cccEEEecccCC-Cccceee
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL--WAHEHYGI---FPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~--~~~~~~~~---~pdi~t~sK~lg-~G~~iG~ 325 (465)
+.|.|++| . .++.+.+++|.++|++||+++|+||+|.++...+.. ......+. ..-+.+|||.+| .|+|+||
T Consensus 170 ~~p~NPtG-~-~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ 247 (386)
T PRK09082 170 NTPHNPSG-T-VWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGY 247 (386)
T ss_pred eCCCCCCC-c-CCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhh
Confidence 55655544 3 457889999999999999999999999876433321 11112222 223347999997 5999999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEE
Q 012368 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~ 405 (465)
+++++++++.+........++.+.+++.++.+.++. .+.+.+++++..+..++.+.+.+.+.+........|.++|+.
T Consensus 248 iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~ 325 (386)
T PRK09082 248 CVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVD 325 (386)
T ss_pred hhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCeeEEEEEe
Confidence 999999998886544445677888888887777752 344444454444444444444444443221222335567777
Q ss_pred ec----CChHHHHHHHH-HCCceEeecC-----C--CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 406 FD----VSATPVVDACR-DSGLLVLTAG-----K--GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 406 ~~----~~~~~~~~~l~-~~Gv~v~~~~-----~--~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
++ .+..++++.|+ ++||.+.|+. . .+++|++++ .+++++++++++|.+
T Consensus 326 ~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 326 YSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA--KQEETLDAAAERLCQ 385 (386)
T ss_pred ccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 63 24678888874 7799998863 1 257999765 478999999998864
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=221.86 Aligned_cols=323 Identities=21% Similarity=0.203 Sum_probs=215.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF 174 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~ 174 (465)
+..++||..|.. ++| .+|.+.+++.+...... .|++..-.+|++.++++++ .++|++|+|+++++..++++
T Consensus 35 ~~~~i~l~~~~~--~~~-~~~~~~~al~~~~~~~~----~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~ 107 (371)
T PRK05166 35 VPRIAKLGSNEN--PLG-PSPAVRRAFADIAELLR----LYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRA 107 (371)
T ss_pred CcceEEcCCCCC--CCC-CCHHHHHHHHHHHHHhh----cCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH
Confidence 446899998754 466 67889999887544322 2333222478888888876 67899999999999988876
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012368 175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 175 a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
+.. +++.|++.+|+|+++...+...+.... . .+...+.. -|++++++.++++...+++++|
T Consensus 108 ~~~-----------~gd~vli~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~----~~~~~l~~~~~~~~~~v~l~~p 168 (371)
T PRK05166 108 VLR-----------PGDRVVTLYPSFPLHEDYPTMMGARVE-R---VTVTPDLG----FDLDALCAAVARAPRMLMFSNP 168 (371)
T ss_pred hcC-----------CCCEEEEcCCChHHHHHHHHHcCCeEE-E---eecCCCCC----CCHHHHHHhhhcCCCEEEEeCC
Confidence 541 688999999999876543322221111 0 11111111 2789999988754444556677
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccccc-C---CcccEEEecccCC-CccceeeEEe
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY-G---IFPDIMTLAKPLA-GGLPIGAALV 328 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~-~---~~pdi~t~sK~lg-~G~~iG~v~~ 328 (465)
.|++| ..++.+.+++|.++|++ ++++|+||+|..|...+.. ...... . ...-+.+|||.++ .|+|+||+++
T Consensus 169 ~NPtG--~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~ 245 (371)
T PRK05166 169 SNPVG--SWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLV 245 (371)
T ss_pred CCCCC--CCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeec
Confidence 66654 34588889999999875 8999999999887422211 111111 1 1223447999999 7999999775
Q ss_pred -CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec
Q 012368 329 -TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD 407 (465)
Q Consensus 329 -~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~ 407 (465)
++++++.+... ...++.+.+++.++.++|. ..++.++..+.....++.+.+.+..++. ...++.|+|+|+.++
T Consensus 246 ~~~~l~~~~~~~--~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~p~~g~fl~~~~~ 319 (371)
T PRK05166 246 SDPELVGLLDRV--RTPFNVNGAAQAAALAALD---DEEHLAKGVALALAERERLKKELAEMGY-RIAPSRANFLFFDAR 319 (371)
T ss_pred CCHHHHHHHHHh--ccCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCcC-eeCCCcCCEEEEeCC
Confidence 68888777532 2356778888888888775 3344444444444444455555555543 334566889988875
Q ss_pred CChHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 408 VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 408 ~~~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.+..++.+.|.++||.+.++.. .+++||++. +.++.+++++.|+.++
T Consensus 320 ~~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 320 RPASAVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVL 369 (371)
T ss_pred CCHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 5678899999999999988632 468999755 5677888888887654
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=220.79 Aligned_cols=335 Identities=16% Similarity=0.084 Sum_probs=215.8
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhccc-c-cCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-V-SNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~ 170 (465)
+.+|||..+... ++ .++.+.+++.+.+..... + ...+..+.++.+++++.+.++ .++|++|+|+++|+.+
T Consensus 30 ~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 30 PGILKLTLGEPD--FT-TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CCeEEcCCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 458999988763 55 367788898887754211 1 111122335566666654444 3689999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--CCeE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTA 248 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~a 248 (465)
+++.+. .+++.|++.+|+|.++.......+..... .+.... .+. .|+++++++++. .+++
T Consensus 107 ~~~~~~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~----~~~~~~-~~~--~d~~~l~~~~~~~~~~~~ 168 (391)
T PRK07309 107 SLTAIL-----------EPGDKVLLPAPAYPGYEPIVNLVGAEIVE----IDTTEN-DFV--LTPEMLEKAILEQGDKLK 168 (391)
T ss_pred HHHHhc-----------CCCCEEEEeCCCCcchHHHHHHcCCEEEE----EecCCc-CCc--CCHHHHHHHhhccCCCeE
Confidence 888654 16889999999999876544333322111 111110 000 278999998863 2455
Q ss_pred EEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc--cCCcccEEEecccCC-Cccce
Q 012368 249 AVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH--YGIFPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 249 ~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~--~~~~pdi~t~sK~lg-~G~~i 323 (465)
++++. |.|++| ...+.+.+++|.++|++||+++|+||+|.+|...+.. ..... .+...-+.+|||.++ .|+|+
T Consensus 169 ~i~l~~P~NPtG--~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRv 246 (391)
T PRK07309 169 AVILNYPANPTG--VTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRI 246 (391)
T ss_pred EEEEECCCCCCC--cCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCcccee
Confidence 55554 665554 4458889999999999999999999999987443421 11111 122223447999998 69999
Q ss_pred eeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012368 324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
||+++++++++.+.........+.+++++.++..+|+.... ....++++++.+.+.+.| ..++.....+..|.+
T Consensus 247 G~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~p~gg~~ 322 (391)
T PRK07309 247 GLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKM----TDLGFKIIKPDGAFY 322 (391)
T ss_pred EEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH----HHCCCeecCCCeeEE
Confidence 99999999988886433333456788889888888864211 122334444444444444 444422122333556
Q ss_pred EEEEecC----ChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 402 IGIEFDV----SATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 402 ~~i~~~~----~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+|+.++. +..++++.++ ++||.+.|+. . ++++|++++ .+.+++++++++|.+++++++
T Consensus 323 ~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 323 IFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred EEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhhc
Confidence 6777631 3567887654 7899998763 1 468999766 368899999999999987654
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=215.06 Aligned_cols=320 Identities=18% Similarity=0.134 Sum_probs=216.0
Q ss_pred CCHHHHHHHHHHHhhc-c--cccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 012368 115 GDADWIKAVVDQANVL-T--HVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDS 186 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~-~--~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~ 186 (465)
.|..|.+++.+.+... . ++.+++.......|++++++.++ .++|++|+|+.+|+..++....
T Consensus 45 ~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~---------- 114 (420)
T KOG0257|consen 45 PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL---------- 114 (420)
T ss_pred CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc----------
Confidence 3445778888877653 1 22333445558889999988665 6689999999999999988776
Q ss_pred CCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee-CCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCC
Q 012368 187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE-YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265 (465)
Q Consensus 187 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~ 265 (465)
+++|.||+++|.|..+...+...++.+.+...- +....+..-. ..|.+.+|.++.+++.++|+++|.|++| -+.+
T Consensus 115 -~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~-~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtG--kvfs 190 (420)
T KOG0257|consen 115 -NPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLK-PKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTG--KVFS 190 (420)
T ss_pred -CCCCEEEEecCcchhhhhHHhhcCCcceeeccc-cccccccCccccCChHHHHhhccCCccEEEEeCCCCCcC--cccC
Confidence 379999999999999998888888776654221 1111111001 1389999999998777888888888887 4569
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---ccccc--ccCCcccEEEecccCCC-ccceeeEEeCHHHHhhccCC
Q 012368 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE--HYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAINYG 339 (465)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~~--~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~~~~ 339 (465)
++.|++|+++|++||+++|+||||.-+-..|. .++.. .+.....+.++||++|. |||+||+++++.++....+.
T Consensus 191 ReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~v 270 (420)
T KOG0257|consen 191 REELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPV 270 (420)
T ss_pred HHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHH
Confidence 99999999999999999999999987656663 22222 12334455578999996 99999999999998888766
Q ss_pred CCcCCCCChHHHHHHHHHHHHHhc---Cc-------hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--
Q 012368 340 DHGSTFAGSPLVCNAAIAVLDKIS---NP-------AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-- 407 (465)
Q Consensus 340 ~~~~t~~~~~~~~~aa~a~L~~~~---~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-- 407 (465)
.....+..+...+.|..+++..-. ++ ++...++++++.+.+.|.++ +.....+..+.|++.+++
T Consensus 271 h~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l----g~~v~~p~gayyl~adfs~~ 346 (420)
T KOG0257|consen 271 HQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL----GLKVTGPEGAYYLWADFSLA 346 (420)
T ss_pred hhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCceEEEEecccc
Confidence 556666666677777666665322 11 24445556666666665554 322233333556666763
Q ss_pred --C----------ChHHHHHHHH-HCCceEeecCC----------CCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 408 --V----------SATPVVDACR-DSGLLVLTAGK----------GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 408 --~----------~~~~~~~~l~-~~Gv~v~~~~~----------~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
. +.-.++.+|. +.|+.+.|... ++.+|+ .+.-+++.++.++++|+
T Consensus 347 ~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~--~~~k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 347 KSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRF--CFCKADETLRKAIERLK 414 (420)
T ss_pred ccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHH--HHHhhHHHHHHHHHHHh
Confidence 0 1223566666 45777666421 123444 34556666777777666
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-25 Score=217.59 Aligned_cols=318 Identities=15% Similarity=0.134 Sum_probs=207.7
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
.+|+..|.. .++ .+|.+++++.+.+.... ...|+.+...++++.++++++ +++|++|+|+++++..+++...
T Consensus 24 ~~~l~~~~~--~~~-~p~~~~~a~~~~~~~~~--~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~- 97 (351)
T PRK14807 24 KYKMDANET--PFE-LPEEVIKNIQEIVKSSQ--VNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI- 97 (351)
T ss_pred eeEccCCCC--CCC-CCHHHHHHHHHHhhcCc--ccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc-
Confidence 467776654 455 67889999988775321 123344446788888998887 6799999999999999888654
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE-EEEEcccC
Q 012368 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA-AVFVEPIQ 256 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a-~vi~ep~~ 256 (465)
.++++|++.+|+|.++...+...+.... . .+...+.. -|+++++++++..+++ +++++|.|
T Consensus 98 ----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---v~~~~~~~----~d~~~l~~~~~~~~~k~v~l~~p~N 159 (351)
T PRK14807 98 ----------NKGDVVIYPHPSFAMYSVYSKIAGAVEI-P---VKLKEDYT----YDVGSFIKVIEKYQPKLVFLCNPNN 159 (351)
T ss_pred ----------CCCCEEEEeCCChHHHHHHHHHcCCeEE-E---eecCCCCC----CCHHHHHHHhhccCCCEEEEeCCCC
Confidence 2689999999999876543333322111 1 11111111 2789999998743444 45555555
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccccCCcccEEEecccCC-CccceeeEEeCHHHHh
Q 012368 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS 334 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~ 334 (465)
++| ... + .+++.++|++++.++|+||+|.+|. ..... .....+...-+-+|||.++ .|+|+||+++++++++
T Consensus 160 PtG-~~~-~---~~~l~~l~~~~~~~~ivDe~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~ 233 (351)
T PRK14807 160 PTG-SVI-E---REDIIKIIEKSRGIVVVDEAYFEFY-GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILK 233 (351)
T ss_pred CCC-CCC-C---HHHHHHHHHhCCCEEEEeCcchhhc-ccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHH
Confidence 554 443 4 4566667777788999999998772 21111 1122222333447999998 7999999999999998
Q ss_pred hccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHH
Q 012368 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVV 414 (465)
Q Consensus 335 ~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~ 414 (465)
.+.... ..++.+++++.++.++|+...-++..++++++.+.+.+.| .+.+.+...++.|.++|+.+. +..++.
T Consensus 234 ~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l----~~~~g~~~~~~~~~~~~i~~~-~~~~~~ 306 (351)
T PRK14807 234 YLNLVK--SPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKEL----SKIPGIKVYPSKTNFILVKFK-DADYVY 306 (351)
T ss_pred HHHHcc--CCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HhCCCcEECcCCccEEEEEcC-CHHHHH
Confidence 886432 2456788899998888863211223333444444444443 344434444566888888874 467788
Q ss_pred HHHHHCCceEeecCC----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 415 DACRDSGLLVLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 415 ~~l~~~Gv~v~~~~~----~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+.|+++||.+.+... .+++||++. +.++.+.+++.|++++
T Consensus 307 ~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 307 QGLLERGILVRDFSKVEGLEGALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred HHHHHCCEEEEECCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 999999999977531 367999754 5778889999887754
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=218.09 Aligned_cols=319 Identities=19% Similarity=0.164 Sum_probs=210.1
Q ss_pred eeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-----CCeEEe
Q 012368 86 SGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFF 160 (465)
Q Consensus 86 ~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~ 160 (465)
++.|.+-+...|+..+|+..|.. +++ .+|.+++++.+.+..... ..|+.....+|++.++++++ .++|++
T Consensus 7 ~~~~~~~~~~~~~~~i~l~~~~~--~~~-~p~~~~~~~~~~~~~~~~--~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~i 81 (335)
T PRK14808 7 IAKRAYPYETEKRDRTYLALNEN--PFP-FPEDLVDEVFRRLNSDTL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSV 81 (335)
T ss_pred hhccCcCCCCCCCceeEecCCCC--CCC-CCHHHHHHHHHHhhhhhh--hcCCCCChHHHHHHHHHHhCCCCCCcceEEE
Confidence 45666666678889999988754 566 678899999887653211 22333345566677776654 789999
Q ss_pred cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHh
Q 012368 161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240 (465)
Q Consensus 161 ~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 240 (465)
|+|++|++..+++.. +.|++.+|+|.++...+...+...... +...+. .++..
T Consensus 82 t~Ga~~~i~~~~~~~---------------d~v~v~~P~y~~~~~~~~~~g~~~~~v----~~~~~~------~~~~~-- 134 (335)
T PRK14808 82 GNGADEIIYVMMLMF---------------DRSVFFPPTYSCYRIFAKAVGAKFLEV----PLTKDL------RIPEV-- 134 (335)
T ss_pred cCCHHHHHHHHHHHh---------------CcEEECCCCHHHHHHHHHHcCCeEEEe----cCCCcC------CCChh--
Confidence 999999999988743 259999999998876665544322111 111111 11111
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-
Q 012368 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA- 318 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg- 318 (465)
.+. .....++++|+||+|.+ .+.+.+++|. +++++||+||+|..|. ...... ...+....-+.+|||.++
T Consensus 135 ~~~-~~~~i~i~nP~NPTG~~--~s~~~l~~l~----~~~~~ii~DE~Y~~f~-~~~~~~~~~~~~~vi~~~S~SK~~~l 206 (335)
T PRK14808 135 NVG-EGDVVFIPNPNNPTGHV--FEREEIERIL----KTGAFVALDEAYYEFH-GESYVDLLKKYENLAVIRTFSKAFSL 206 (335)
T ss_pred Hcc-CCCEEEEeCCCCCCCCC--cCHHHHHHHH----hcCCEEEEECchhhhc-CCchHHHHHhCCCEEEEEechhhccC
Confidence 122 24566777788777643 4666666554 5899999999999883 111111 122222334558999999
Q ss_pred CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc
Q 012368 319 GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398 (465)
Q Consensus 319 ~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 398 (465)
.|+|+||+++++++++.+.... .+++.+.+++.++.++++.. +..++..+.....++.+.+.+...+ +...++.
T Consensus 207 ~GlRvG~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~ 280 (335)
T PRK14808 207 AAQRIGYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHR---EIFEERTKFIVEERERMKSALREMG-YRITDSR 280 (335)
T ss_pred cccceEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHCC-CEECCCC
Confidence 6999999999999999886433 34677888898888888632 2222222222222344444444444 3344568
Q ss_pred ceEEEEEec-CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 399 GLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 399 g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
|.|+|+.++ .+..++.+.|.++||++.... +.+|++ ..+.++.+++++.|++
T Consensus 281 g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~~~--~~~Ris---i~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 281 GNFVFIFMEKEEKERLLEHLRAKNIAVRSFR--EGVRIT---IGKREENDMILKELEV 333 (335)
T ss_pred CeEEEEeCCCccHHHHHHHHHHCCeEEEECC--CCeEEe---cCCHHHHHHHHHHHHh
Confidence 999998884 345788999999999998753 579997 4467899999988875
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=220.44 Aligned_cols=334 Identities=13% Similarity=0.122 Sum_probs=216.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~ 168 (465)
|.+++||..+.+ .+..+|.+.+++.+.+.... +....+..+.++++++++.+.++ .+ ++++|+|+++++
T Consensus 28 ~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l 104 (395)
T PRK08175 28 GEDIIDFSMGNP---DGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL 104 (395)
T ss_pred CCCeEEcCCCCC---CCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 456788887643 33456778888877664321 11111223346666666665544 45 799999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--CC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GK 246 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~ 246 (465)
..+++.+. .++++|++.+|+|..+...+...+..... .+...+. .+.++++++++. .+
T Consensus 105 ~~~~~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~----v~~~~~~-----~~~~~l~~~l~~~~~~ 164 (395)
T PRK08175 105 AHLMLATL-----------DHGDTVLVPNPSYPIHIYGAVIAGAQVRS----VPLVEGV-----DFFNELERAIRESYPK 164 (395)
T ss_pred HHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHHcCCeEEE----EecccCC-----CcHHHHHHHHhhccCC
Confidence 98777554 26899999999998766544332211110 0111110 136788887762 24
Q ss_pred eEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccc-cc---cCCcccEEEecccCC-C
Q 012368 247 TAAVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAH-EH---YGIFPDIMTLAKPLA-G 319 (465)
Q Consensus 247 ~a~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~-~~---~~~~pdi~t~sK~lg-~ 319 (465)
+++|++. |.|++| ..++.+.+++|.++|++||+++|+||+|.++-..+.. ... .. .+...-+.+|||.+| .
T Consensus 165 ~~~v~i~~p~NPtG--~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~p 242 (395)
T PRK08175 165 PKMMILGFPSNPTA--QCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMA 242 (395)
T ss_pred ceEEEEeCCCCCCC--CCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCc
Confidence 5555554 655554 4568899999999999999999999999876433321 111 11 122223457999997 6
Q ss_pred ccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc
Q 012368 320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG 399 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g 399 (465)
|+|+||+++++++++.+........++.+.+.+.++.++|+. .+.+.+++++..+..++.+.+.+...+.....+..|
T Consensus 243 GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g 320 (395)
T PRK08175 243 GWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG--DQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKAS 320 (395)
T ss_pred chhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEE
Confidence 999999999999998876433334566677788888888863 234444455444444444555444444322233458
Q ss_pred eEEEEEecC-----ChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 400 LIIGIEFDV-----SATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 400 ~~~~i~~~~-----~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++|++++. ++.++++.|+ ++||.+.|+. . .+++||++. .+++.+.+++++|.+++++
T Consensus 321 ~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~--~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 321 MYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI--ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred EEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence 889998842 3577888776 6899998862 1 357999764 5889999999999998865
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=222.59 Aligned_cols=347 Identities=14% Similarity=0.103 Sum_probs=212.1
Q ss_pred EEEecccCcccccCCCCC--HHHHHHHHHHHhhcc------ccc-CCCCCHHHHHHHHHHHhhcC----CCeEEecCCHH
Q 012368 99 EYLDLSSGIAVNALGHGD--ADWIKAVVDQANVLT------HVS-NMYYSIPQIELAKRLVACSF----ADRVFFSNTGT 165 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~--p~v~~a~~~~~~~~~------~~~-~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~ 165 (465)
..+||..+.+. + ... +.+.+++.+.+.... .+. ..+..+.++++++++.+.++ +++|++|+|++
T Consensus 31 ~~i~l~~g~p~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~ 107 (416)
T PRK09440 31 GAIMLGGGNPA--H-IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQ 107 (416)
T ss_pred CceeccCCCCC--c-cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChH
Confidence 35788776542 1 122 346666666554311 111 11223446677777765544 67999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEE-EcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhhcC
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATEFVS-FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQ 243 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~-~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~ 243 (465)
+|+..++++...... +.+++.|++ .+|+|+++...+...+..........+...+. ..+ -|+++|+ +.
T Consensus 108 ~al~~~~~~l~~~~~------~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~--~~ 177 (416)
T PRK09440 108 SAFFYLFNLFAGRRA------DGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQ--FKYHVDFEHLH--ID 177 (416)
T ss_pred HHHHHHHHHHhcccc------CCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccc--cccCCCHHHcc--cC
Confidence 999998886652100 014678999 69999998753322110000000011111110 001 2678876 34
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cc-c-ccCCcccEEEecccCCCc
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-E-HYGIFPDIMTLAKPLAGG 320 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~-~-~~~~~pdi~t~sK~lg~G 320 (465)
.....+++++|.||+| .+++.+.+++|.++|++||+++|+||+|..+- ....+ .. . ..+...-+.+|||....|
T Consensus 178 ~~~~~i~l~~P~NPTG--~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~-~~~~~~~~~~~~~~~vI~~~SfSK~~~pG 254 (416)
T PRK09440 178 EDTGAICVSRPTNPTG--NVLTDEELEKLDALARQHNIPLLIDNAYGPPF-PGIIFSEATPLWNPNIILCMSLSKLGLPG 254 (416)
T ss_pred CCceEEEEecCCCCCC--ccCCHHHHHHHHHHHHHcCCcEEEeCCccccC-CCcchhhcCccccCCeEEEecccccCCCc
Confidence 3344666677776665 34589999999999999999999999996431 11100 00 0 012223345899974459
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA-----FLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
+|+||+++++++++.+........++.+.+++.++.++|+...-.. +.+.++++.+.+++.|.+.+...+ +...
T Consensus 255 lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~-~~~~ 333 (416)
T PRK09440 255 VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEP-CLIH 333 (416)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-eEEe
Confidence 9999999999999888654333445678899999988886321111 122233344444444444332222 2222
Q ss_pred ec-cceEEEEEec---CChHHHHHHHHHCCceEeecCC------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 396 RG-LGLIIGIEFD---VSATPVVDACRDSGLLVLTAGK------------GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 396 ~~-~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~~------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+ .|.++|++++ .+..++.+.|.++||.+.|+.. .+++||+++ .+++++++++++|.+++++
T Consensus 334 ~p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 334 KPEGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAEEVEK 411 (416)
T ss_pred cCCCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 33 4788888884 2567889999999999988521 137898765 4789999999999999988
Q ss_pred hhhcC
Q 012368 460 LDSNS 464 (465)
Q Consensus 460 ~~~~~ 464 (465)
..+++
T Consensus 412 ~~~~~ 416 (416)
T PRK09440 412 AYAES 416 (416)
T ss_pred HhhcC
Confidence 77653
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=218.18 Aligned_cols=339 Identities=19% Similarity=0.174 Sum_probs=214.2
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHHhh---cCCCeEEecCCHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~---~~~~~v~~~~sG~eA~~~al~ 173 (465)
..++||..+... ++ .++.+.+++.+.......+ ...+..+.++++++.+... ...++|++|+|+++|+..+++
T Consensus 30 ~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~ 106 (397)
T PRK07568 30 IKVYHLNIGQPD--IK-TPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMM 106 (397)
T ss_pred CCEEEecCCCCC--CC-CCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHH
Confidence 346777776542 33 3678888887754432111 1111222344455544321 126799999999999999887
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
... .++++|++.+|+|..+.......+. .... .+...+..+ ...|+++++++++++...++++.
T Consensus 107 ~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~---v~~~~~~g~-~~~~~~~l~~~~~~~~~~v~i~~ 170 (397)
T PRK07568 107 AIC-----------DPGDEILVPEPFYANYNGFATSAGV-KIVP---VTTKIEEGF-HLPSKEEIEKLITPKTKAILISN 170 (397)
T ss_pred Hhc-----------CCCCEEEEecCCCccHHHHHHHcCC-EEEE---eecCcccCC-CCCCHHHHHHhcCccceEEEEEC
Confidence 653 1688999999999765433222221 1100 011100000 01257899999875444555667
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cc-ccccCCccc---EEEecccCCC-ccceeeEE
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WA-HEHYGIFPD---IMTLAKPLAG-GLPIGAAL 327 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~-~~~~~~~pd---i~t~sK~lg~-G~~iG~v~ 327 (465)
|.|++| ..++.+.+++|.++|+++|+++|+||+|.+|.+.+.. .. ....+..+. +.+|||.++. |+|+||++
T Consensus 171 p~NPtG--~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~ 248 (397)
T PRK07568 171 PGNPTG--VVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLI 248 (397)
T ss_pred CCCCCC--ccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEe
Confidence 766654 4568888999999999999999999999988555431 11 111122223 3379999995 99999999
Q ss_pred eC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc-eEEEEE
Q 012368 328 VT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG-LIIGIE 405 (465)
Q Consensus 328 ~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g-~~~~i~ 405 (465)
++ +++++.+..... .+++.+.+.+.++.++|+. .+.+.+++++..+..++.+.+.+..++.+....+.| .++|+.
T Consensus 249 ~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~ 325 (397)
T PRK07568 249 SKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDT--PESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAK 325 (397)
T ss_pred cCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEe
Confidence 85 678776643222 2467788899888888863 234455555444444555555555554333333444 556777
Q ss_pred ec-CChHHHHHHHHH------CCceEeecC--------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 406 FD-VSATPVVDACRD------SGLLVLTAG--------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 406 ~~-~~~~~~~~~l~~------~Gv~v~~~~--------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++ .+..++.+.|++ +||.+.|+. ..+++|+++. .+++++++++++|.+++++...
T Consensus 326 l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l~~~~~ 395 (397)
T PRK07568 326 LPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV--LNEEDLKRAMEILKEALEKYNK 395 (397)
T ss_pred cCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHHhhc
Confidence 74 356778888875 599998752 1258999764 5689999999999999987653
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=217.19 Aligned_cols=286 Identities=14% Similarity=0.053 Sum_probs=189.8
Q ss_pred CCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 135 NMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 135 ~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
..|+.+...+|+++++++++ .++|++|+|++|++..++++ . + ++ +|++.+|+|..+...+...+.
T Consensus 35 ~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~-~---~--------~~-~vv~~~P~y~~y~~~~~~~G~ 101 (332)
T PRK06425 35 SIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY-I---N--------VG-NIIIVEPNFNEYKGYAFTHGI 101 (332)
T ss_pred ccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-h---C--------CC-cEEEeCCChHHHHHHHHHcCC
Confidence 34677778899999999987 78999999999999998863 2 1 33 688889999888766655443
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
..... +... . -.|.+.+++ .+...+++++|+||+|. ..+.+.+++|.++|++||++||+||+|..|
T Consensus 102 ~v~~v----p~~~-~----~~~~~~l~~---~~~k~v~l~nP~NPTG~--~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~ 167 (332)
T PRK06425 102 RISAL----PFNL-I----NNNPEILNN---YNFDLIFIVSPDNPLGN--LISRDSLLTISEICRKKGALLFIDEAFIDF 167 (332)
T ss_pred eEEEE----eCCc-c----cCcHHHHhh---cCCCEEEEeCCCCCcCC--ccCHHHHHHHHHHHHHcCCEEEEecchhcc
Confidence 22111 1110 0 013444432 23345666788777764 458899999999999999999999999988
Q ss_pred CCCCcccccc---ccCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 293 GRTGYLWAHE---HYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 293 gr~g~~~~~~---~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
...+...... .++...-+.||||.++ .|+|+||+++++++++.+... ...++.+.+++.+ +.....+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~--~~~~~~~~~~~~~----l~~~~~~~~~ 241 (332)
T PRK06425 168 VPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKI--TEPWSVCDPAIDF----IRSIDLDYVA 241 (332)
T ss_pred ccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHc--CCCCccCHHHHHH----HHHhhhHHHH
Confidence 5333111111 1122333458999999 799999999999999888642 2334444443322 2222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcH
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISE 443 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~ 443 (465)
++.++..+..++.+.+.+..++.....++.|+|+++.++ +..++.+.|+++||.+.++.. .+++||++ .+.
T Consensus 242 ~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~-~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~---~~~ 317 (332)
T PRK06425 242 KHSLDIMENERSYLINNLEAMGFRAAGDPSANFITFMIP-DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAI---RRR 317 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEEcC-CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEe---CCH
Confidence 344444444444444444444422222457889998875 678899999999999988632 26899974 378
Q ss_pred HHHHHHHHHHHHHH
Q 012368 444 QELDQAVEILCKTL 457 (465)
Q Consensus 444 e~i~~~l~~l~~~l 457 (465)
+++++++++|++++
T Consensus 318 ~~~~~l~~al~~~~ 331 (332)
T PRK06425 318 SFNIKLVNALRNFL 331 (332)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999998765
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-25 Score=218.78 Aligned_cols=333 Identities=18% Similarity=0.152 Sum_probs=208.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~a 171 (465)
.++|+..+.+... .++.+.+++.+.+......+ ..+....++++++++.+.++ ++ +|++|+||++|+.++
T Consensus 25 ~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 101 (387)
T PRK07777 25 GAVNLGQGFPDED---GPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAA 101 (387)
T ss_pred CeEEccCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHH
Confidence 4688888876432 35678888777765421111 11122335556666555555 33 799999999999988
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
+.... +++++|++..|+|+++...+...+.... . .+..+. ..+. .|++++++++.++...++
T Consensus 102 ~~~~~-----------~~gd~vli~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~~~~--~d~~~l~~~~~~~~~~v~ 164 (387)
T PRK07777 102 VLGLV-----------EPGDEVLLIEPYYDSYAAVIAMAGAHRV-P---VPLVPDGRGFA--LDLDALRAAVTPRTRALI 164 (387)
T ss_pred HHHhc-----------CCCCEEEEeCCCchhhHHHHHHCCCEEE-E---eecCCccCCCc--CCHHHHHHhcCcccEEEE
Confidence 87553 1688999999999887644333322111 1 111111 0110 278999998875333444
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-ccccccc-C---CcccEEEecccCC-Ccccee
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHY-G---IFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~-~---~~pdi~t~sK~lg-~G~~iG 324 (465)
+++|.|+ +|. .++.+.+++|.++|++|++++|+||+|.++...+. ......+ + ...-+.+|||.++ .|+|+|
T Consensus 165 l~~p~NP-tG~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG 242 (387)
T PRK07777 165 VNSPHNP-TGT-VLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIG 242 (387)
T ss_pred EcCCCCC-CCc-cCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeE
Confidence 4445444 444 45889999999999999999999999988744332 1111111 1 2223457999998 699999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i 404 (465)
|+++++++++.+.......+++.+.+.+.++..+++.. +.+.+++++..+..++.+.+.+...+.....+..|.++|+
T Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 320 (387)
T PRK07777 243 WACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHE--DAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCA 320 (387)
T ss_pred EEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcceEEEe
Confidence 99999998887764444445666666777776666532 3344444444444444444444443321112223556666
Q ss_pred Eec----CChHHHHHHHH-HCCceEeecC------C--CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 405 EFD----VSATPVVDACR-DSGLLVLTAG------K--GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 405 ~~~----~~~~~~~~~l~-~~Gv~v~~~~------~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.++ .++.++++.|+ ++||.+.|+. . .+.+||+++ .+++++++++++|.++.
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~--~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 321 DPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC--KRDDTLDEAIRRLRALR 384 (387)
T ss_pred cccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 752 25678999997 5799998763 1 247888765 47999999999998754
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=215.43 Aligned_cols=322 Identities=17% Similarity=0.114 Sum_probs=208.4
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
..++||..+. ++++ .+|.+.+++.+.+..... |+.....+|.+.++++++ .++|++|+|++|++..+++.+
T Consensus 22 ~~~i~l~~~~--n~~~-~~~~~~~a~~~~~~~~~~----Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l 94 (360)
T PRK07392 22 DAILDFSASI--NPLG-PPESVIAAIQSALSALRH----YPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGREL 94 (360)
T ss_pred ccEEEeCCcC--CCCC-CCHHHHHHHHHHHHHhhc----CCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence 3678888764 3566 778999998887764221 232224577777877775 789999999999999888854
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceE-eeCCCHHHHHhhcCCCCeEEEEEcc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF-VEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
. +++.|++.+|+|.++...+...+.... . .+...+... ....|++++++... .....++++|
T Consensus 95 ~------------~g~~vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~nP 157 (360)
T PRK07392 95 A------------QLRAVYLITPAFGDYRRALRAFGATVK-E---LPLPLDQPSPGLTLRLQTLPPQLT-PNDGLLLNNP 157 (360)
T ss_pred C------------CCCeEEEECCCcHHHHHHHHHcCCeEE-E---EecccccCCcccccCHHHHHHhcc-CCCEEEEeCC
Confidence 3 467899999999888765554432211 1 011111100 00125666665543 3456777788
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc----ccccCCcccEEEecccCC-CccceeeEEeC
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA----HEHYGIFPDIMTLAKPLA-GGLPIGAALVT 329 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~----~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~ 329 (465)
+||+|-+ .+ .++|.++++++++ +|+||+|.+|...+.... ....+...-+.+|||.++ .|+|+||++++
T Consensus 158 ~NPTG~~--~~---~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~ 231 (360)
T PRK07392 158 HNPTGKL--WS---REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAH 231 (360)
T ss_pred CCCCCCC--cC---HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCC
Confidence 7777643 35 4466777788885 666999998854442111 111122233447999999 79999999999
Q ss_pred HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC
Q 012368 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS 409 (465)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~ 409 (465)
+++++.+... ...++.+.+++.++.++|+ +..+.+++++..+..++.+.+.+..++.+...++.|.|+++++..+
T Consensus 232 ~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl~~~~~~~ 306 (360)
T PRK07392 232 PDRLQRWQQW--RDPWPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFLLVQSQGS 306 (360)
T ss_pred HHHHHHHHhh--CCCCCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCCEEEEEcCCC
Confidence 9998887632 2457788999999988886 3345554444444444555555555554444456688888887556
Q ss_pred hHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 410 ATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 410 ~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
..++.+.|+ ++||.+.++.. .+++||++. +.++.+++.+.|++++
T Consensus 307 ~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~~~l~~al~~~~ 357 (360)
T PRK07392 307 ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVR---TEAENQRLLEALAAIL 357 (360)
T ss_pred HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 678888865 67999998732 368999754 3444556665555544
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=221.45 Aligned_cols=311 Identities=17% Similarity=0.157 Sum_probs=207.1
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
.+|+.+|-. ++| .+|.+ ... ..+.|+.....+|++++++.++ .++|++|+|++|++..+++.+..
T Consensus 30 ~~~l~~Nen--p~~-~~~~~------~~~----~~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~ 96 (351)
T PRK01688 30 DVWLNANEY--PTA-VEFQL------TQQ----TLNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCE 96 (351)
T ss_pred ceEecCCCC--CCC-CChhh------ccc----ccccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC
Confidence 588877744 666 33432 111 1244666667899999999987 78999999999999999886542
Q ss_pred HhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccC
Q 012368 178 FQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQ 256 (465)
Q Consensus 178 ~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~ 256 (465)
++ +.|++.+|+|..+...+...+.... . .+...+.. .|++++++++. +...+++++|+|
T Consensus 97 -----------~g~~~vli~~P~y~~y~~~~~~~G~~~~-~---v~~~~~~~----~d~~~l~~~~~-~~~lv~l~nPnN 156 (351)
T PRK01688 97 -----------PGKDAILYCPPTYGMYSVSAETIGVEIR-T---VPTLDNWQ----LDLPAIADNLD-GVKVVYVCSPNN 156 (351)
T ss_pred -----------CCCCEEEEcCCCHHHHHHHHHHcCCEEE-E---eecCCCCC----CCHHHHHHhcc-CCcEEEEeCCCC
Confidence 44 7899999999877644333322111 1 11111111 27899988884 445667788877
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-CccceeeEEeCHHHHh
Q 012368 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS 334 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~ 334 (465)
++|. ..+.+.+++|.+.|++ +++||+||+|..|........ ...++...-+-||||.+| +|+|+||+++++++++
T Consensus 157 PTG~--~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~ 233 (351)
T PRK01688 157 PTGN--LINPQDLRTLLELTRG-KAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVIN 233 (351)
T ss_pred CCCC--CCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHH
Confidence 7763 4588889999999986 689999999988842211111 111222223347999999 6999999999999998
Q ss_pred hccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc-eeeeccceEEEEEecCChHHH
Q 012368 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV-KDVRGLGLIIGIEFDVSATPV 413 (465)
Q Consensus 335 ~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~g~~~~i~~~~~~~~~ 413 (465)
.+... ...|+.+.+++.++.++|+... .++.++..+.....++.+.+.+..++.+ ...++.++|+++.+. +..++
T Consensus 234 ~l~~~--~~~~~v~~~~~~~a~~~L~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~-~~~~l 309 (351)
T PRK01688 234 LLLKV--IAPYPLSTPVADIAAQALSPQG-IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT-ASSAV 309 (351)
T ss_pred HHHhc--cCCCCCCHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC-CHHHH
Confidence 88643 3456777778888888776311 1222222222223344444444555433 244567888888874 56789
Q ss_pred HHHHHHCCceEeecC----CCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 414 VDACRDSGLLVLTAG----KGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 414 ~~~l~~~Gv~v~~~~----~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.+.|+++||.+++++ ..+++|+++. +++++++++++|
T Consensus 310 ~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~al 350 (351)
T PRK01688 310 FKSLWDQGIILRDQNKQPGLSNCLRITIG---TREECQRVIDAL 350 (351)
T ss_pred HHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHHhh
Confidence 999999999998653 2478999855 789999999887
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=215.00 Aligned_cols=302 Identities=21% Similarity=0.226 Sum_probs=207.1
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
.+.++|..+.. +++. | +.++. .... ..|+++...+++++++++++ .++|++|+|+++++..+.+++
T Consensus 17 ~~~~~~~~~~~--~~~~--~-~~~~~---~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l 84 (330)
T TIGR01140 17 EDWLDFSTGIN--PLGP--P-VPPIP---ASAW----ARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL 84 (330)
T ss_pred hheeEccccCC--CCCC--C-hhhcc---hHHH----hhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh
Confidence 34688888763 3432 3 22221 1111 22333335788889998887 589999999999998865542
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEccc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI 255 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~ 255 (465)
. ++ +|++.+|+|+.+....... +..+.+++|++++++.+++ ..+++++.|.
T Consensus 85 ~------------~g-~vl~~~p~y~~~~~~~~~~---------------g~~~~~~~d~~~l~~~~~~-~~~v~i~~p~ 135 (330)
T TIGR01140 85 A------------PG-RVLVLAPTYSEYARAWRAA---------------GHEVVELPDLDRLPAALEE-LDVLVLCNPN 135 (330)
T ss_pred C------------CC-eEEEeCCCcHHHHHHHHHc---------------CCEEEEeCCHHHHHhhccc-CCEEEEeCCC
Confidence 1 35 6999999998876433221 2222333489999999853 3466778886
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE---EecccCC-CccceeeEEeCHH
Q 012368 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM---TLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~~~~ 331 (465)
|++| ..++.+.+++|.++|++||+++|+||+|.+|...... ....+..++++ +|||.+| .|+|+||++++++
T Consensus 136 NPtG--~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~ 211 (330)
T TIGR01140 136 NPTG--RLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASL--APQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPA 211 (330)
T ss_pred CCCC--CCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccch--hhHhccCCCEEEEEecchhhcCchhhhhheeCCHH
Confidence 6655 3458899999999999999999999999887432111 11111112323 7999999 6999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+... ...++.++++++++...++ +.++.++.++..+..++.+.+.++.++.+...++.|.|+|+.+. +..
T Consensus 212 ~~~~l~~~--~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~-~~~ 285 (330)
T TIGR01140 212 LLARLREA--LGPWTVNGPARAAGRAALA---DTAWQAATRARLAAERARLAALLARLGGLEVVGGTALFLLVRTP-DAA 285 (330)
T ss_pred HHHHHHhc--CCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEEcC-CHH
Confidence 99888743 3456778888888887776 44555666666666677777777677644444566888888874 457
Q ss_pred HHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
+++++|+++||.+.++.. .+++|++++ ...++ +.++++|
T Consensus 286 ~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~-~~~~~~l 329 (330)
T TIGR01140 286 ALHEALARRGILIRDFDNFPGLDPRYLRFALP--TDEEN-DRLEEAL 329 (330)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCCEEEEEec--CHHHH-HHHHHhh
Confidence 899999999999998632 367999754 33344 7777665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=217.62 Aligned_cols=340 Identities=14% Similarity=0.123 Sum_probs=216.9
Q ss_pred CCCEEEecccCcccc-cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--------CCeEEecCCHHH
Q 012368 96 EGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--------ADRVFFSNTGTE 166 (465)
Q Consensus 96 dG~~ylD~~~~~~~~-~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--------~~~v~~~~sG~e 166 (465)
.|..++|+..+.+.. +.-..++.+.+++.+.+..... ..+.+.....++++.++++++ .++|++|+|+++
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~ 107 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKF-NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQ 107 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHH
Confidence 467889999887642 1112568899999887764211 111122223344444444432 578999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (465)
|+.++++++.. ++++|++.+|+|.++...+...+..... .+..+.... --|++++++++.++.
T Consensus 108 al~~~~~~l~~-----------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----~~~~~~~~~--~~d~~~l~~~~~~~~ 170 (403)
T TIGR01265 108 AIEICIEALAN-----------PGANILVPRPGFPLYDTRAAFSGLEVRL----YDLLPEKDW--EIDLDGLEALADEKT 170 (403)
T ss_pred HHHHHHHHhCC-----------CCCEEEEeCCCchhHHHHHHHcCCEEEE----ecCCcccCC--ccCHHHHHHHhCcCc
Confidence 99999997651 6889999999997665433322211110 011111000 027899999887655
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccccC---CcccEEEecccCC-Ccc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHYG---IFPDIMTLAKPLA-GGL 321 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~~---~~pdi~t~sK~lg-~G~ 321 (465)
..++++.|.|++| ...+.+.+++|.++|+++|+++|+||+|.+|.+.+.. .....+. ...-+.+|||.++ .|+
T Consensus 171 ~~v~i~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGl 248 (403)
T TIGR01265 171 VAIVVINPSNPCG--SVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGW 248 (403)
T ss_pred cEEEEecCCCCCC--CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcc
Confidence 5667777766655 3458888999999999999999999999988554422 1111111 1223347999976 599
Q ss_pred ceeeEEeC--HH-----HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 322 PIGAALVT--EK-----VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 322 ~iG~v~~~--~~-----i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
|+||++++ ++ +++.+... ...+++.+.+++.++.++|+.. .+.+.++.++....-++.+.+.+..++.+..
T Consensus 249 RiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 326 (403)
T TIGR01265 249 RLGWIIIHDPHGIFRDTVLQGLKNL-LQRILGPATIVQGALPDILENT-PQEFFDGKISVLKSNAELCYEELKDIPGLVC 326 (403)
T ss_pred eEEEEEEeCchhhhHHHHHHHHHHH-hhhhcCCChHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 99999983 22 33333221 1124567889999998888642 2344444444444444455555555543332
Q ss_pred -eeccceEEEEEecC-------ChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 395 -VRGLGLIIGIEFDV-------SATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 395 -~~~~g~~~~i~~~~-------~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+..|.++|++++. +..++++.|+ ++||.+.|+. ..+++|+++. .+++.+++++++|.+++++
T Consensus 327 ~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 327 PKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITIT--VPESMLEEACSRIKEFCER 401 (403)
T ss_pred cCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 34457888888742 4667888864 7899998864 2478999765 4688999999999988865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=219.88 Aligned_cols=338 Identities=14% Similarity=0.097 Sum_probs=203.9
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-------cccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-------HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGT 165 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-------~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~ 165 (465)
|..++|+..+.. .++ .+|.+.+++.+.+.... +....+..+.++++++++.+..+ +++|++|+|+.
T Consensus 33 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~ 109 (409)
T PRK07590 33 EAKIIRLGIGDV--TQP-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK 109 (409)
T ss_pred CCceEEecCcCC--CCC-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence 556788888765 344 56889999988876521 11111122235555555544333 78999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC-C
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-P 244 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~ 244 (465)
+|+..++.+ . +++++|++.+|+|+++...+...+.... ..+... ...+..+|.+.-+.+..-+. +
T Consensus 110 ~al~~l~~~-~-----------~~gd~V~v~~P~Y~~~~~~~~~~g~~~~-~~~~~~-~~~~~~v~~~~~~~~~~d~~~~ 175 (409)
T PRK07590 110 CDTGNILDI-F-----------GPDNTIAVTDPVYPVYVDTNVMAGRTGE-ANEDGR-YSGIVYLPCTAENNFVPELPEE 175 (409)
T ss_pred HHHHHHHHh-c-----------CCCCEEEEeCCCCcchHHHHHHcCCccc-cccccc-ccceeEeecccccCCcccCccc
Confidence 998875432 1 1689999999999988765544432200 000000 00122222210000111111 2
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccccc-C---CcccEEEecccCC-
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY-G---IFPDIMTLAKPLA- 318 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~-~---~~pdi~t~sK~lg- 318 (465)
+..++++++|.||+| .+++.+.+++|.++|++||++||+||+|..|-..+.. ...... + ....+.||||.++
T Consensus 176 ~~k~i~l~nP~NPTG--~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 253 (409)
T PRK07590 176 KVDIIYLCFPNNPTG--TVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGF 253 (409)
T ss_pred CceEEEEeCCCCCcC--CcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCC
Confidence 233455567766665 4568999999999999999999999999987433321 111111 1 2233447999998
Q ss_pred CccceeeEEeCHHHHhhccC-----------CCCcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 012368 319 GGLPIGAALVTEKVASAINY-----------GDHGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 319 ~G~~iG~v~~~~~i~~~~~~-----------~~~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
.|+|+||+++++++++.+.. .....++ +.+.+++.++.++|+.. ...+.+++++.....++.+.+.+
T Consensus 254 pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~l~~~L 332 (409)
T PRK07590 254 TGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE-GKAQIKELIDYYMENAKIIREGL 332 (409)
T ss_pred cCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998873210 0112233 46788888888877521 12334444444333344444444
Q ss_pred HcCCCceeeec-cceEEEEEec--CChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 387 ARNPHVKDVRG-LGLIIGIEFD--VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 387 ~~~~~~~~~~~-~g~~~~i~~~--~~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
..++ +....+ .|.++|+.++ .+..+++..|+ ++||.+.|+. . .+++||+. ..+++++++++++|.+++
T Consensus 333 ~~~~-~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 333 ESAG-FEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSA--FGSRENVLEAMERIKKAL 409 (409)
T ss_pred HhcC-CceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEc--cCCHHHHHHHHHHHHhhC
Confidence 4444 223333 4678889884 24677888877 5699998763 1 25899973 458999999999998753
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=219.55 Aligned_cols=325 Identities=15% Similarity=0.135 Sum_probs=206.9
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHh--hcccccCCCCC-HHHHHHHHHHHhhcC--------CC-eEEecCCHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQAN--VLTHVSNMYYS-IPQIELAKRLVACSF--------AD-RVFFSNTGTE 166 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~--~~~~~~~~~~~-~~~~~la~~l~~~~~--------~~-~v~~~~sG~e 166 (465)
++|||.++.. .+++++|.+.+++.+..+ ........|+. ....+|++.++++++ .+ .|++++|..+
T Consensus 2 ~~I~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~ 79 (363)
T PF00155_consen 2 DVINLGSNAP--LLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA 79 (363)
T ss_dssp TEEESSSSST--SSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred CEEEEECCCC--CCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence 4789988865 445556666655555443 11111223333 336677777777665 67 7888877777
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee-------CCCHHHHH
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE-------YGNIEATR 239 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le 239 (465)
++..++.++. . .+++.|++.+|+|.++...+...+.. +..+| ..|+++|+
T Consensus 80 ~~~~~~~~~~--~--------~~~~~vlv~~P~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~ 136 (363)
T PF00155_consen 80 ALFLLLRLLK--I--------NPGDTVLVPDPCYPSYIEAARLLGAE-------------VIPVPLDSENDFHLDPEALE 136 (363)
T ss_dssp HHHHHHHHHH--S--------STTSEEEEEESSSTHHHHHHHHTTSE-------------EEEEEEEETTTTEETHHHHH
T ss_pred chhhhhhccc--c--------cccccceecCCccccccccccccCce-------------eeeccccccccccccccccc
Confidence 7776666553 1 15889999999998876554433221 11222 23899999
Q ss_pred hhcCC---C--Ce-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-c-ccccCCccc--
Q 012368 240 KLIQP---G--KT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A-HEHYGIFPD-- 309 (465)
Q Consensus 240 ~~l~~---~--~~-a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~-~~~~~~~pd-- 309 (465)
+.+++ + ++ ..++.+|.|++ |. .++.+.+++|.++|++||+++|+||+|.++......+ . .......++
T Consensus 137 ~~l~~~~~~~~~~~~v~~~~p~nPt-G~-~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi 214 (363)
T PF00155_consen 137 EALDELPSKGPRPKAVLICNPNNPT-GS-VLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVI 214 (363)
T ss_dssp HHHHTSHTTTETEEEEEEESSBTTT-TB-B--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEE
T ss_pred cccccccccccccceeeeccccccc-cc-ccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccce
Confidence 98874 1 23 44445554444 43 4588999999999999999999999999874332211 1 111222222
Q ss_pred -EEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHH
Q 012368 310 -IMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 310 -i~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
+.++||.+| .|+|+||+++++++++.+... ...+..+.+.+.++.+.+..... ..+.++.++.....++.+.+.+
T Consensus 215 ~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L 292 (363)
T PF00155_consen 215 VVGSLSKSFGLPGLRVGYIVAPPELIERLRRF--QRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREAL 292 (363)
T ss_dssp EEEESTTTTTSGGGTEEEEEEEHHHHHHHHHH--HHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeccccccccccccccccchhhhhhhhhhc--cccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHH
Confidence 337899998 599999999999999888643 22333377777777777764321 1233444444444444444444
Q ss_pred HcCCCceeeeccceEEEEEecC-ChHHHHHHHHHC-CceEeecC---CCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 387 ARNPHVKDVRGLGLIIGIEFDV-SATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.+.+........|.++++.++. +..++++.|+++ ||.+.|+. ..+++|+++ ..++++++++++++|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 293 EEIGITVLPPEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp HHTTSEEEHHSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred HHhhhheeeccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 4444332333356777777643 357899999998 99999853 257899988 688999999999886
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=217.66 Aligned_cols=342 Identities=14% Similarity=0.150 Sum_probs=210.2
Q ss_pred CCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhc--C--CCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACS--F--ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~--~--~~~v~~~~sG~eA~~ 169 (465)
.|+..+||..|... +++. .++.+.+++.+.+.....+.. .+..+.++++++++.+.. + .++|++++|+++++.
T Consensus 31 ~~~~~i~l~~g~p~-~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~ 109 (404)
T PRK09265 31 EGHKILKLNIGNPA-PFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIV 109 (404)
T ss_pred cCCCeEEecCCCCC-cCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHH
Confidence 55677888876543 4554 567788888876654211111 111222444444443221 2 678999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
.+++.+. .+++.|++.+|+|..+...+...+...... +......+ ..|++++++.++++...+
T Consensus 110 ~~~~~~~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~----~~~~~~~~--~~d~~~l~~~~~~~~~~v 172 (404)
T PRK09265 110 MAMQALL-----------NNGDEVLVPAPDYPLWTAAVSLSGGKPVHY----LCDEEAGW--FPDLDDIRSKITPRTKAI 172 (404)
T ss_pred HHHHHhC-----------CCCCEEEEeCCCCcChHHHHHHcCCEEEEE----ecccccCC--CCCHHHHHHhccccceEE
Confidence 9888654 168899999999987665443332211110 10000000 027899999887544556
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccccc--C-CcccEEEecccCC-Ccccee
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY--G-IFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~--~-~~pdi~t~sK~lg-~G~~iG 324 (465)
+++.|.|++| ...+.+.+++|.++|++||+++|+||+|.+|-..+.. ...... + ....+-+|||.++ .|+|+|
T Consensus 173 ~l~~P~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG 250 (404)
T PRK09265 173 VIINPNNPTG--AVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVG 250 (404)
T ss_pred EEECCCCCCC--cCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceE
Confidence 7778866655 3458899999999999999999999999887443321 111111 1 1122346899996 599999
Q ss_pred eEEe--CHH----HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceee-e
Q 012368 325 AALV--TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDV-R 396 (465)
Q Consensus 325 ~v~~--~~~----i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~ 396 (465)
|+++ +++ +++.+... ...+++.|.+++.++.++|...+. ..+.+..+.. ...++.+.+.+..++.+... +
T Consensus 251 ~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~L~~~~~~~~~~p 328 (404)
T PRK09265 251 WMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRL-YEQRDRAWELLNAIPGVSCVKP 328 (404)
T ss_pred EEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHH-HHHHHHHHHHHhcCCCCcccCC
Confidence 9996 343 33333211 123466788899998888852211 1122111111 12234444444455433333 3
Q ss_pred ccceEEEEEecC------Ch-HHHHHHHHHCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 397 GLGLIIGIEFDV------SA-TPVVDACRDSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 397 ~~g~~~~i~~~~------~~-~~~~~~l~~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..|.++|+.++. .. ..+.+.|.++||.+.|+. ..+++|+++ ..+++++++++++|.++++..+
T Consensus 329 ~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~~l~rl~~~l~~~~ 403 (404)
T PRK09265 329 KGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEEAIGRIGRFLSGYR 403 (404)
T ss_pred CcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHhc
Confidence 447788877732 23 346677789999998763 136899976 4689999999999999987654
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=207.40 Aligned_cols=300 Identities=14% Similarity=0.073 Sum_probs=201.9
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a 175 (465)
+...+|||..+. ++++ +|.+.+++.+.+... ..|+. ...++++++++++ ++|++|+|++||+..++.++
T Consensus 6 ~~~~~i~l~~~~--np~~--p~~~~~a~~~~~~~~----~~yp~--~~~l~~~ia~~~~-~~I~vt~G~~~al~~~~~~~ 74 (311)
T PRK08354 6 REEGLIDFSASV--NPYP--PEWLDEMFERAKEIS----GRYTY--YEWLEEEFSKLFG-EPIVITAGITEALYLIGILA 74 (311)
T ss_pred CccceeEecCCC--CCCC--CHHHHHHHHHHHHHh----hcCCC--hHHHHHHHHHHHC-CCEEECCCHHHHHHHHHHhh
Confidence 344689999874 4554 588999998876542 22332 4568888888877 57999999999998776533
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEccc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI 255 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~ 255 (465)
. +++.|++.+|+|.++...+...+.... .++ .|++.+++.+++ ...+++++|.
T Consensus 75 ~------------~gd~vlv~~P~y~~~~~~~~~~g~~~~-------------~~~-~d~~~l~~~~~~-~~~vi~~~P~ 127 (311)
T PRK08354 75 L------------RDRKVIIPRHTYGEYERVARFFAARII-------------KGP-NDPEKLEELVER-NSVVFFCNPN 127 (311)
T ss_pred C------------CCCeEEEeCCCcHHHHHHHHHcCCEEe-------------ecC-CCHHHHHHhhcC-CCEEEEecCC
Confidence 2 588999999999888765544332211 111 378899888863 4568888997
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHHHHh
Q 012368 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS 334 (465)
Q Consensus 256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~ 334 (465)
|++| ...+.+.+++|.++|++||+++|+||+|.+|...+.. .. .+...-+.+|||.++ .|+|+||+++ +.+
T Consensus 128 NPTG--~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~--~~-~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~ 199 (311)
T PRK08354 128 NPDG--KFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES--PE-GENIIKLRTFTKSYGLPGIRVGYVKG---FEE 199 (311)
T ss_pred CCCC--CccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc--cC-CCcEEEEeccHhhcCCccceeeeeee---hHH
Confidence 7665 3568899999999999999999999999988443321 11 222333457999999 7999999998 334
Q ss_pred hccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHH
Q 012368 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVV 414 (465)
Q Consensus 335 ~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~ 414 (465)
.+.... ..+..+.++++++.+.++ +. .+++++..+.+++..+.+.... ..++.|.|+++++. +..+++
T Consensus 200 ~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~~~~~-~~~~~~ 267 (311)
T PRK08354 200 AFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREKERFEKAL----YVKSDANFFIKDVG-DAEKFV 267 (311)
T ss_pred HHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHhc----CCCCCCcEEEEECC-CHHHHH
Confidence 443222 234456666666655554 11 2344444444444443322221 12456777777653 567899
Q ss_pred HHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 415 DACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 415 ~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+.|.++||.+.++.. ++++||++. +.++.+++++.|+++
T Consensus 268 ~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~ 309 (311)
T PRK08354 268 EFLKRNGILVRDCTSFGLPGYIRFSVR---DREENEKLIRALREW 309 (311)
T ss_pred HHHHHCCeEEEecccCCCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence 999999999998742 478999744 556677777777654
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=224.53 Aligned_cols=326 Identities=12% Similarity=0.077 Sum_probs=206.7
Q ss_pred CHHHHHHHHHHHhhcc-----cccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 012368 116 DADWIKAVVDQANVLT-----HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDS 186 (465)
Q Consensus 116 ~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~ 186 (465)
+..+++++.+.++... +....+..+.++++++++.+..+ +++|++|+|+++|+..+++++..
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~--------- 160 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG--------- 160 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc---------
Confidence 4467777776655421 11111223346666666665433 78999999999999999987641
Q ss_pred CCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC------CCeEEEEEcccCCCCC
Q 012368 187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP------GKTAAVFVEPIQGEGG 260 (465)
Q Consensus 187 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~------~~~a~vi~ep~~~~~G 260 (465)
+++|.|++.+|+|+++...+...+...... ++..+..+- -|+++|++++++ +..++++++|.|++|
T Consensus 161 -~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v----~~~~~~~~~--~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG- 232 (481)
T PTZ00377 161 -DPSDGVMIPIPQYPLYSAAITLLGGKQVPY----YLDEEKGWS--LDQEELEEAYEQAVRNGITPRALVVINPGNPTG- 232 (481)
T ss_pred -CCCCEEEECCCCchhHHHHHHHcCCEEEEE----EeccccCCC--CCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCC-
Confidence 168999999999998876655544332211 111111110 278999998852 233467777876665
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-ccc-cccc--cCCc---------ccEEEecccC-C-Cccceee
Q 012368 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-YLW-AHEH--YGIF---------PDIMTLAKPL-A-GGLPIGA 325 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g-~~~-~~~~--~~~~---------pdi~t~sK~l-g-~G~~iG~ 325 (465)
.+++.+.+++|.++|++||++||+||+|..+.+.+ ..+ .... .++. .-+-+|||.+ + .|||+||
T Consensus 233 -~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~ 311 (481)
T PTZ00377 233 -QVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGY 311 (481)
T ss_pred -cCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEE
Confidence 45689999999999999999999999998864422 111 1100 0111 1223689986 6 4999999
Q ss_pred EEe---CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc--C---chHHHHHHHHH---HHHHHHHHHHHHcCCCcee
Q 012368 326 ALV---TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--N---PAFLASVSKKG---HYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 326 v~~---~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--~---~~~~~~~~~~~---~~l~~~l~~~~~~~~~~~~ 394 (465)
+++ ++++++.+.... ...++.|+++|.++.++|+... + +.+.+++++.. +..++.+.+.+..++.+..
T Consensus 312 ~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~ 390 (481)
T PTZ00377 312 FELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSC 390 (481)
T ss_pred EEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEe
Confidence 986 889988886533 2345788899999998885311 1 12333333322 2233344444555554554
Q ss_pred eeccc-eEEEEEecC--------------ChHHHHHH-HHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHH
Q 012368 395 VRGLG-LIIGIEFDV--------------SATPVVDA-CRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEI 452 (465)
Q Consensus 395 ~~~~g-~~~~i~~~~--------------~~~~~~~~-l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~ 452 (465)
..+.| .++|+++.. ....++.. |.++||.+.|+.. .+++|+++. .+++++++++++
T Consensus 391 ~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~r 468 (481)
T PTZ00377 391 QPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKK 468 (481)
T ss_pred ecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHH
Confidence 55555 566655421 12334444 4577999988641 247999765 678899999999
Q ss_pred HHHHHHHhhh
Q 012368 453 LCKTLPVLDS 462 (465)
Q Consensus 453 l~~~l~~~~~ 462 (465)
|.+++++..+
T Consensus 469 l~~~~~~~~~ 478 (481)
T PTZ00377 469 IKEFHESFMK 478 (481)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=233.10 Aligned_cols=340 Identities=11% Similarity=0.101 Sum_probs=218.7
Q ss_pred EEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--C---CeEEecCCHH
Q 012368 91 KLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A---DRVFFSNTGT 165 (465)
Q Consensus 91 ~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~---~~v~~~~sG~ 165 (465)
++.+.+|..+|++..|.. .++ .+|.+++++.+.+.+... ..+..+.+.++++++++.++ . ++|++++|++
T Consensus 690 ~~~~~~g~~vI~LsinE~--d~p-pPp~V~eAi~eal~~~~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~ 764 (1082)
T PLN02672 690 SVSGSQESSLIHMDVDES--FLP-VPSAVKASIFESFVRQNI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSL 764 (1082)
T ss_pred CCcccCCCCEEEEeCCCC--CCC-CCHHHHHHHHHHHhhcCC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHH
Confidence 455667889999998865 555 788999999987765322 22233458899999999876 2 4899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP- 244 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~- 244 (465)
+++..++++... +++.|++.+|+|..+...+...+...... +...+..+. .|+++|++++++
T Consensus 765 elL~lll~aLl~-----------pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~V----pl~~e~gf~--lD~d~Le~al~~~ 827 (1082)
T PLN02672 765 ALFNKLVLCCVQ-----------EGGTLCFPAGSNGTYVSAAKFLKANFRRI----PTKSSDGFK--LTAKTLASTLETV 827 (1082)
T ss_pred HHHHHHHHHHcC-----------CCCEEEEeCCChHHHHHHHHHcCCEEEEE----ecccccCCC--CCHHHHHHHhccC
Confidence 999888886652 68999999999998886665544322211 221111111 278899999864
Q ss_pred CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc---ccc----cc-C-----CcccE
Q 012368 245 GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW---AHE----HY-G-----IFPDI 310 (465)
Q Consensus 245 ~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~---~~~----~~-~-----~~pdi 310 (465)
....+++++|+ ||+| .+++++.+++|.++|++||++||+||+|.++-+.+... ... .+ . ...-+
T Consensus 828 ~~~~I~L~nPnhNPTG--~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL 905 (1082)
T PLN02672 828 KKPWVYISGPTINPTG--LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALL 905 (1082)
T ss_pred CCCEEEEECcCCCCcC--ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEE
Confidence 34578888997 5554 45699999999999999999999999999765544311 110 11 1 11122
Q ss_pred EEecccCCC-ccceeeEEeCH-HHHhhccCCCC-cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHH---HHHHHHHHHH
Q 012368 311 MTLAKPLAG-GLPIGAALVTE-KVASAINYGDH-GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKK---GHYFKETLKQ 384 (465)
Q Consensus 311 ~t~sK~lg~-G~~iG~v~~~~-~i~~~~~~~~~-~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~---~~~l~~~l~~ 384 (465)
.+|||.++. |+|+||+++++ ++++.+..... ...+..+.+++.++++++.. +...+.+++++. .+..++.+.+
T Consensus 906 ~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~-~~~~~~~~l~e~r~~Lk~rRd~L~e 984 (1082)
T PLN02672 906 GGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQ-KSSDLLDGVAEQKKILKSRAERLKE 984 (1082)
T ss_pred eCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999985 89999999964 58887754211 11122233344444433320 112222222222 3333334444
Q ss_pred HHHcCCCceeeeccce-EEEEEec-------------------CChHHHHHHHHHC-CceEeecC---CCCEEEEecCCC
Q 012368 385 KLARNPHVKDVRGLGL-IIGIEFD-------------------VSATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLI 440 (465)
Q Consensus 385 ~~~~~~~~~~~~~~g~-~~~i~~~-------------------~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~~~~ 440 (465)
.+..++. ...++.|. ++|+.+. .+..++++.|+++ ||.+.|+. ..+++||++.
T Consensus 985 ~L~~~Gi-~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa-- 1061 (1082)
T PLN02672 985 TLEACGW-DVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFA-- 1061 (1082)
T ss_pred HHHHCCC-eEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEec--
Confidence 4444443 34445554 4555431 1456799999875 99999863 2478898764
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 012368 441 ISEQELDQAVEILCKTLP 458 (465)
Q Consensus 441 ~t~e~i~~~l~~l~~~l~ 458 (465)
.+++++++++++|++++.
T Consensus 1062 ~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1062 LEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 588899999999998664
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=217.17 Aligned_cols=321 Identities=18% Similarity=0.167 Sum_probs=211.7
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~ 176 (465)
.+||+..+.+ .+| .+|.+.+++.+.+..... |+.....++++.++++++ .++|++++|+++++..+++...
T Consensus 23 ~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~----y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~ 95 (352)
T PRK03321 23 GAIKLSSNET--PFG-PLPSVRAAIARAAAGVNR----YPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA 95 (352)
T ss_pred cceeccCCCC--CCC-CCHHHHHHHHHHHHhcCc----CCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc
Confidence 4789888755 355 567899999887654322 334446788888888876 5689999999998888777543
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccC
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQ 256 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~ 256 (465)
.+++.|++..|+|..+.......+. .... .+..+.. ..|++++++.++++...+++++|.|
T Consensus 96 -----------~~gd~Vli~~p~y~~~~~~~~~~g~-~~~~---v~~~~~~----~~~~~~l~~~~~~~~~~v~l~~p~N 156 (352)
T PRK03321 96 -----------GPGDEVIFAWRSFEAYPILVQVAGA-TPVQ---VPLTPDH----THDLDAMAAAITDRTRLIFVCNPNN 156 (352)
T ss_pred -----------CCCCEEEeCCCCHHHHHHHHHHcCC-EEEE---ccCCCCC----CCCHHHHHHhhccCCCEEEEeCCCC
Confidence 1688999999998654322221211 1111 1111111 1278999999875444455556655
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccccCCcccEE---EecccCC-CccceeeEEeCHH
Q 012368 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHYGIFPDIM---TLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~~~~ 331 (465)
++ |.+ .+.+.+.++.+.| ++++++|+||+|.+|.+.+.. .........++++ +|||.+| .|+|+||++++++
T Consensus 157 Pt-G~~-~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~ 233 (352)
T PRK03321 157 PT-GTV-VTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPE 233 (352)
T ss_pred Cc-CCC-cCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHH
Confidence 55 444 3555555555544 369999999999887544321 1122222223444 7899998 6999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+... ..+++.+++++.++.++|+. .+.+.+++++..+. ++.+.+.+...+. ...+..|.++++.+.....
T Consensus 234 ~~~~~~~~--~~~~~~s~~~q~~a~~~l~~--~~~~~~~~~~~~~~-r~~~~~~L~~~~~-~~~~~~g~~i~i~l~~~~~ 307 (352)
T PRK03321 234 VIAALRKV--AVPFSVNSLAQAAAIASLAA--EDELLERVDAVVAE-RDRVRAALRAAGW-TVPPSQANFVWLPLGERTA 307 (352)
T ss_pred HHHHHHHh--cCCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHH-HHHHHHHHHHCCC-ccCCCCCCEEEEeCCCCHH
Confidence 99988743 35677899999998888862 23343444333322 2334444444442 2234468888888755677
Q ss_pred HHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
++.+.|.++||.+.+.+. +.+||++ .+.+++++++++|++++.
T Consensus 308 ~~~~~l~~~gI~v~~~~~-~~iRi~~---~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 308 DFAAAAAEAGVVVRPFAG-EGVRVTI---GAPEENDAFLRAARAWRA 350 (352)
T ss_pred HHHHHHHHCCEEEEccCC-CcEEEee---CCHHHHHHHHHHHHHHhc
Confidence 899999999999988654 5699974 588999999999998764
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-24 Score=209.17 Aligned_cols=297 Identities=13% Similarity=0.095 Sum_probs=198.2
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ 192 (465)
+||.|+++..+++++++ +..+.+.+|+++|+++++. +++++++||++|+..++..+.. +++.
T Consensus 34 ~~~~~~~~~~~~~~~~~-----g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~-----------~gd~ 97 (346)
T TIGR03576 34 GGFKIDEEDLELLETYV-----GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEP-----------PGRK 97 (346)
T ss_pred CChhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCC-----------CCCE
Confidence 78999999999988752 3457799999999999985 8999999999999999986652 6888
Q ss_pred EEEEcC--CcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 193 FVSFTN--SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 193 ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
|+++.| -+|.+......+.+. .++.++|+++++. . + ++.+|++++. ++.|.+ .+.+.|+
T Consensus 98 Vli~~~d~p~~~s~~~~~~l~ga--------------~~~~~~~l~~l~~-~-~-~~~lIiitg~-s~~G~v-~~~~~L~ 158 (346)
T TIGR03576 98 VVHYLPEKPAHPSIPRSCKLAGA--------------EYFESDELSELKK-I-D-GTSLVVITGS-TMDLKV-VSEEDLK 158 (346)
T ss_pred EEECCCCCCCchhHHHHHHHcCC--------------EEeccCCHHHHhh-C-c-CceEEEEECC-CCCCcc-cCHHHHH
Confidence 887533 233333232222221 1223356776543 2 2 3566777764 555654 3678899
Q ss_pred HHHHHHHHhCCEEEEeccccCC--CCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCCh
Q 012368 271 FLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGS 348 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~--gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~ 348 (465)
+|.++|++||++||+||+|..+ +..|.. ....++...-+.||||++ +|+++||+++++++++.+........++.+
T Consensus 159 ~i~~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~~divv~s~SKal-aG~r~G~v~~~~~li~~l~~~~~~~~~s~~ 236 (346)
T TIGR03576 159 RVIKQAKSKEAIVLVDDASGARVRRLYGQP-PALDLGADLVVTSTDKLM-DGPRGGLLAGRKELVDKIKSVGEQFGLEAQ 236 (346)
T ss_pred HHHHHHHHcCCEEEEECCccccccccCCCC-CHHHcCCcEEEeccchhc-cccceEEEEeCHHHHHHHHHhhcCcccCcc
Confidence 9999999999999999999743 112221 112223222234789965 367999999999999988765444455578
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC-ChHHH-HHHHHHCCceEee
Q 012368 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-SATPV-VDACRDSGLLVLT 426 (465)
Q Consensus 349 ~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~-~~~l~~~Gv~v~~ 426 (465)
++.++|+.++|+....+...+.++++.+.+.+.+. .+.. .+..++|++++++. +..++ .+.|.++||.+.|
T Consensus 237 ~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~----~~~~---~~~~~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~ 309 (346)
T TIGR03576 237 APLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFD----KLNV---ERTPTGFVIKGVEEEKLIEIGLDLLRNYGIITIT 309 (346)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH----hCCC---CcCCCeEEEEeCCCCCHHHHHHHHHHhCCEEEeC
Confidence 88999999999865434445555555555555444 2222 12345577777742 23344 4555578999998
Q ss_pred cC----CCCEEEEecCCCCcHH---HHHHHHHHHHHHH
Q 012368 427 AG----KGNVVRLVPPLIISEQ---ELDQAVEILCKTL 457 (465)
Q Consensus 427 ~~----~~~~lRi~~~~~~t~e---~i~~~l~~l~~~l 457 (465)
+. .++++||++. ..++ +++.++++|++.+
T Consensus 310 ~~~f~~~~~~vRis~~--~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 310 AVGMPGASKTLRFDLA--AKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred CcccCCCCCeEEEEEe--cChHHhcCHHHHHHHHHhcc
Confidence 53 1478999754 3333 7999999998765
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=209.72 Aligned_cols=327 Identities=14% Similarity=0.143 Sum_probs=205.5
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF 178 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~ 178 (465)
+++||.++.++ ..+|.+.+++.+. ..... ..++++...+|++.++++++.+.++++++|++++..++.+...
T Consensus 6 ~~~~~~~~~~~----~~~~~~~~a~~~~--~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~- 77 (353)
T PLN02721 6 RVVDLRSDTVT----KPTDAMRAAMANA--EVDDD-VLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCD- 77 (353)
T ss_pred hhhhhhccccc----CCCHHHHHHHHhc--cCCCc-ccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHcc-
Confidence 56788888764 2678899998764 11111 2344556789999999999977789999999998877776541
Q ss_pred hhhcCCCCCCCCceEEEEcCCcccCccc--cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC------CCeEEE
Q 012368 179 QRHSNPDSKEPATEFVSFTNSFHGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP------GKTAAV 250 (465)
Q Consensus 179 t~~~~~~~~~~~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~------~~~a~v 250 (465)
.++++|++.+++|...... .....+.... +.+...... .|++++++++++ .++++|
T Consensus 78 ---------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~~----~d~~~l~~~i~~~~~~~~~~~~~v 141 (353)
T PLN02721 78 ---------VRGSEVILGDNSHIHLYENGGISTLGGVHPR---TVKNNEDGT----MDLDAIEAAIRPKGDDHFPTTRLI 141 (353)
T ss_pred ---------CCCCeEEEcCccceehhcccchhhhcCceeE---ecCCCcCCC----cCHHHHHHHHHhccCCCCCcceEE
Confidence 1578999999987433221 1111111110 011111111 278999999862 357788
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccccCCccc--EEEecccCCCccceee-E
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPD--IMTLAKPLAGGLPIGA-A 326 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~~~pd--i~t~sK~lg~G~~iG~-v 326 (465)
+++++++++|...++.+++++|.++|++||++||+||+|. ++.... ...........| ++++||++++ ++|+ +
T Consensus 142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~--~~G~~~ 218 (353)
T PLN02721 142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA--PVGSVI 218 (353)
T ss_pred EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC--ceeeEE
Confidence 8888766655556788999999999999999999999975 321110 001111111233 4578999874 5665 6
Q ss_pred EeCHHHHhhccCCCC--cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce--eeeccceEE
Q 012368 327 LVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK--DVRGLGLII 402 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~--~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~g~~~ 402 (465)
++++++++.+..... ..+....+..++++..+++.. .+..++..++.+++.+.|+ +++.+. ..+..+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~ 292 (353)
T PLN02721 219 VGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQEN--VPKLEDDHKKAKLLAEGLN----QIKGLRVNVAAVETNIV 292 (353)
T ss_pred ecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----hCCCcEEecCCccceEE
Confidence 678888776543211 111111122233334444322 1112333344445554444 443221 223346677
Q ss_pred EEEec----CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 403 GIEFD----VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 403 ~i~~~----~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+. .....+++.|.++||.+.+.+. .++|+++++.++++|+++++++|++++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~-~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 293 YFDITDGSRITAEKLCKSLEEHGVLLMPGNS-SRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred EEEccCCccccHHHHHHHHHhCCcEEecCCC-ceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 77773 2467899999999999998865 78999999899999999999999988753
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=209.78 Aligned_cols=332 Identities=16% Similarity=0.138 Sum_probs=209.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhccc----c-cCCCCCHHHHHHHHHHHhhc----CCCeEEecCCHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH----V-SNMYYSIPQIELAKRLVACS----FADRVFFSNTGTEAN 168 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~----~-~~~~~~~~~~~la~~l~~~~----~~~~v~~~~sG~eA~ 168 (465)
...+||..+.+. + ..++.+.+++.+.++.... + ...+....+..+++.+.+.+ .+++|++++|+++++
T Consensus 33 ~~~~~l~~g~p~--~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al 109 (394)
T PRK06836 33 DNVFDFSLGNPS--V-PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGAL 109 (394)
T ss_pred CCeEEecCcCCC--C-CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHH
Confidence 457888776542 2 2567888888877653211 1 11112233555666655443 277899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
..+++.+.. +++.|++.+|+|.++.......+....+ .+..++. + .-|+++++++++++...
T Consensus 110 ~~~~~~l~~-----------~gd~Vli~~p~~~~~~~~~~~~g~~v~~----v~~~~~~-~--~~d~~~l~~~~~~~~~~ 171 (394)
T PRK06836 110 NVALKAILN-----------PGDEVIVFAPYFVEYRFYVDNHGGKLVV----VPTDTDT-F--QPDLDALEAAITPKTKA 171 (394)
T ss_pred HHHHHHhcC-----------CCCEEEEcCCCCccHHHHHHHcCCEEEE----EecCCcc-C--cCCHHHHHhhcCcCceE
Confidence 998886641 6889999999998876443322211111 1111110 0 02789999999754344
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCEEEEeccccCCCCCCcc--ccccccCCcccEEEecccCC-C
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDD------AGALLVFDEVQCGLGRTGYL--WAHEHYGIFPDIMTLAKPLA-G 319 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~~g~gr~g~~--~~~~~~~~~pdi~t~sK~lg-~ 319 (465)
++++.|+|++| . ..+.+.+++|.++|++ ||+++|+||+|.+|...+.. .....++...-+.+|||.++ .
T Consensus 172 v~~~~p~NPtG-~-~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~p 249 (394)
T PRK06836 172 VIINSPNNPTG-V-VYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLP 249 (394)
T ss_pred EEEeCCCCCCC-c-CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCc
Confidence 44455554444 3 4588899999999999 89999999999987443321 11112222233347899999 6
Q ss_pred ccceeeEEeCHHHHhh------ccCC-CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 320 GLPIGAALVTEKVASA------INYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~------~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
|+|+||+++++++.+. +... .....++.+++.+.++...++. ....+.++++.+.+.+.|+ +++..
T Consensus 250 GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~r~~l~~~L~----~~g~~ 322 (394)
T PRK06836 250 GERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDA---TVDVSIYKRNRDLLYDGLT----ELGFE 322 (394)
T ss_pred ceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHH----hCCCE
Confidence 9999999998876332 1111 1112245677788887766642 2223344445444444443 44422
Q ss_pred eeeeccceEEEEEec-CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 393 KDVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 393 ~~~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
...+..|.++|+.++ .+..++++.|.++||.+.++. .++++||+++ .+++++++++++|++++++.+
T Consensus 323 ~~~~~gg~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 323 CVKPQGAFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAFEKLAKEYK 393 (394)
T ss_pred eecCCceEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhc
Confidence 122333667777664 356788888999999999874 2478999876 589999999999999987653
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=212.67 Aligned_cols=337 Identities=13% Similarity=0.057 Sum_probs=199.9
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCC-CCHHHHHHHHHHHhhc-----CCCeEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMY-YSIPQIELAKRLVACS-----FADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~la~~l~~~~-----~~~~v~~~~sG~eA~ 168 (465)
|..++|+..+.. .++ .+|.+.+++.+.+.+... ....| +.....+|.+.+++++ .+++|++|+|+++++
T Consensus 32 ~~~~i~l~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al 108 (402)
T TIGR03542 32 SADIIRLGIGDT--TQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV 108 (402)
T ss_pred CCCeEEcCCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence 466788888755 333 468889999888765311 01112 2223445555555532 378999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHH-hhcC-CCC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR-KLIQ-PGK 246 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le-~~l~-~~~ 246 (465)
..++.+ . . ++++|++.+|+|+++...+...+.. ..... ......+..+|.++-+.+. +... .+.
T Consensus 109 ~~l~~l-~--~---------~gd~Vlv~~P~y~~~~~~~~~~g~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 174 (402)
T TIGR03542 109 FRLQSL-F--G---------SDNTVAVQDPVYPAYVDSNVMAGRA-GVLDD-DGRYSKITYLPCTKENNFIPDLPEEPKI 174 (402)
T ss_pred HHHHHh-c--C---------CCCEEEEeCCCCcchHHHHHHcCCc-ccccc-ccccceEEEeecchhhCCCCCccccCCc
Confidence 875432 2 1 5789999999999887655443321 00000 0000012222321100010 0111 223
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccc-ccc---CCcccEEEecccCC-Cc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAH-EHY---GIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~-~~~---~~~pdi~t~sK~lg-~G 320 (465)
.++++++|.||+| .+++.+.+++|.++|++||++||+||+|..|...+. .... ... +....+.+|||.+| .|
T Consensus 175 ~~i~l~nP~NPTG--~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pG 252 (402)
T TIGR03542 175 DIIYLCSPNNPTG--TVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTG 252 (402)
T ss_pred eEEEEeCCCCCCC--ccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCC
Confidence 4555666666655 456899999999999999999999999998743332 1111 111 22233458999998 69
Q ss_pred cceeeEEeCHHHH--------hhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 321 LPIGAALVTEKVA--------SAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 321 ~~iG~v~~~~~i~--------~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
+|+||++++++++ ..+.........+.+.+++.++.++++.... ....+.++.....++.+.+.++.++ +
T Consensus 253 lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~-~ 330 (402)
T TIGR03542 253 VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL-QPILEAISYYMENARILRKALEAAG-F 330 (402)
T ss_pred cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch-hHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 9999999998876 2221111112234677888887777752111 1122222222223333444444443 2
Q ss_pred eeeec-cceEEEEEecC--ChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 393 KDVRG-LGLIIGIEFDV--SATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 393 ~~~~~-~g~~~~i~~~~--~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
....+ .|.++|+.++. +..++++.|+ ++||.+.++. . .+++||+. ..+++++++++++|+++
T Consensus 331 ~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 331 KVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSA--FGKRENIVEACERIKEA 401 (402)
T ss_pred eecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHhh
Confidence 22333 46788998843 5678888887 5699998863 1 36899974 44889999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=216.92 Aligned_cols=301 Identities=18% Similarity=0.101 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhhc------CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 140 IPQIELAKRLVACS------FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 140 ~~~~~la~~l~~~~------~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
..++++++++.+.+ .+++|++|+|+++++..++.+.. ++++.|++.+|+|.++........+.
T Consensus 90 ~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~-----------~pGd~Vlv~~P~Y~~~~~~~~~~~g~ 158 (468)
T PLN02450 90 AFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA-----------EPGDAFLLPTPYYPGFDRDLKWRTGV 158 (468)
T ss_pred HHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC-----------CCCCEEEECCCCCCchHHHHhhcCCc
Confidence 34667777776542 26789999999999999888665 27899999999998886544321221
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~-a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
.... .+......+. .|+++++++++. .++ ++++++|.||+| .+++.+.+++|.++|++||++||+||
T Consensus 159 ~~v~---v~~~~~~~~~--~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG--~~~s~e~l~~ll~~a~~~~~~iI~DE 231 (468)
T PLN02450 159 EIVP---IHCSSSNGFQ--ITESALEEAYQQAQKLNLKVKGVLITNPSNPLG--TTTTRTELNLLVDFITAKNIHLISDE 231 (468)
T ss_pred EEEE---EecCCccCCc--CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCC--cccCHHHHHHHHHHHHHCCcEEEEEc
Confidence 1111 1111111110 167888877642 234 466677877766 34689999999999999999999999
Q ss_pred cccCCCCCCccc-c-ccc-----------cCCcccEEEecccCC-CccceeeEEeCHH-HHhhccCCCCcCCCCChHHHH
Q 012368 288 VQCGLGRTGYLW-A-HEH-----------YGIFPDIMTLAKPLA-GGLPIGAALVTEK-VASAINYGDHGSTFAGSPLVC 352 (465)
Q Consensus 288 v~~g~gr~g~~~-~-~~~-----------~~~~pdi~t~sK~lg-~G~~iG~v~~~~~-i~~~~~~~~~~~t~~~~~~~~ 352 (465)
+|.++-+.+..+ . ... .+...-+-+|||.++ +|+|+||++++++ +++.+.... ...+.+.+++
T Consensus 232 ~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~Q 309 (468)
T PLN02450 232 IYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS--SFGLVSSQTQ 309 (468)
T ss_pred cccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh--hcCCCCHHHH
Confidence 999764444211 1 111 111222447999998 6999999999754 555554221 1123577889
Q ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--------ChHHHHHHHH-HCCc
Q 012368 353 NAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--------SATPVVDACR-DSGL 422 (465)
Q Consensus 353 ~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~-~~Gv 422 (465)
.++.++|+...- ..+.++.++.....++.+.+.+.+++.....+..|.|+|+.++. ...+++..|+ ++||
T Consensus 310 ~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV 389 (468)
T PLN02450 310 YLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKL 389 (468)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCE
Confidence 888888863211 12333334444444444555555554322223346688888731 1234666776 4799
Q ss_pred eEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 423 LVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 423 ~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+.|+.. .+++|++++. .+++++++++++|++++.+..
T Consensus 390 ~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 390 NISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred EEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence 9998731 3689997653 478999999999999987654
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=206.93 Aligned_cols=312 Identities=14% Similarity=0.141 Sum_probs=199.3
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
.|..++||..+.. +++ .+|.+.+++.+.+.... ...|+.....+++++++++++ .++|++|+|+++++..+++
T Consensus 16 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~ 90 (337)
T PRK03967 16 EGNYRIWLDKNEN--PFD-LPEELKEEIFEELKRVP--FNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVK 90 (337)
T ss_pred CCCceEEecCCCC--CCC-CCHHHHHHHHHHhhcCc--cccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHH
Confidence 3456788888754 454 56889999988775421 123444446778888888876 7899999999999987766
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.. +++.|++.+|+|..+.......+. .... .+...+.. .|++++++.+. +....++++
T Consensus 91 ~~-------------~gd~V~v~~P~y~~~~~~~~~~g~-~~~~---v~~~~~~~----~d~~~l~~~~~-~~~~v~~~~ 148 (337)
T PRK03967 91 LF-------------EGKHIVITPPTFGMYSFYAKLNGI-PVID---VPLKEDFT----IDGERIAEKAK-NASAVFICS 148 (337)
T ss_pred Hh-------------CCCeEEEeCCChHHHHHHHHHcCC-eEEE---eecCCCCC----cCHHHHHHhcc-CCCEEEEeC
Confidence 43 278899999999765433222221 1111 11111111 27788888764 334566778
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-CccceeeEEeCHH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~ 331 (465)
|.|++|.+ .+. ++|.+++ ++++++|+||+|.+|.. ..... .+......-+.+|||.++ .|+|+||++++++
T Consensus 149 P~NPtG~~--~~~---~~l~~i~-~~~~~ii~De~y~~~~~-~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~ 221 (337)
T PRK03967 149 PNNPTGNL--QPE---EEILKVL-ETGKPVVLDEAYAEFSG-KSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEE 221 (337)
T ss_pred CCCCCCCC--CCH---HHHHHHH-hcCCEEEEECchhhhcc-cchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHH
Confidence 87666633 354 4555666 47999999999998732 11111 111122233447999999 7999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+.... ..++.+.+++.++.++|+.. +.+.+..+.. ...++.+.+.+.++ ..++.|.++|+.+
T Consensus 222 ~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~-~~~r~~l~~~L~~~----~~~~~~~~~~~~~----- 287 (337)
T PRK03967 222 IIDALYRIK--PPFSLNILTMKIVRLALDHY--DLIEERIDYI-IKERERVRRELGEY----AYPSDANFLLLKL----- 287 (337)
T ss_pred HHHHHHhhc--CCCCCCHHHHHHHHHHHhCH--HHHHHHHHHH-HHHHHHHHHHhccC----cCCCCCcEEEEhH-----
Confidence 988886432 34677889999998888632 1222222222 22233344333332 2345678887765
Q ss_pred HHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.+.+.|+++||.+.+... .+++|+++. +.++.+++++.|+++..
T Consensus 288 ~~~~~l~~~gi~v~~~~~~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 288 DAYDYLLENGIVVRKLSGRLEGHIRVTVG---KREENDEFIKALKEIKE 333 (337)
T ss_pred HHHHHHHHCCEEEEeCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence 278889999999976532 468999744 66778888888877654
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-23 Score=190.84 Aligned_cols=340 Identities=16% Similarity=0.165 Sum_probs=230.0
Q ss_pred CEEEecccCcccccCCC--CCHHHHHHHHHHHhhccc---ccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012368 98 REYLDLSSGIAVNALGH--GDADWIKAVVDQANVLTH---VSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
+.+|-+..|.++. +|- ..++..+|+.++++.+.. .++.+....+.++++.+.+... ++.|++|+|.++|+
T Consensus 61 k~iipl~~GDPsv-~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAI 139 (447)
T KOG0259|consen 61 KPILPLGHGDPSV-YPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAI 139 (447)
T ss_pred ceeccCCCCCCCc-cccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHH
Confidence 4677666666543 342 567888999999886432 1222233446677777655543 78999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCc-eEeeCCCHHHHHhhcCCCCe
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV-NFVEYGNIEATRKLIQPGKT 247 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~le~~l~~~~~ 247 (465)
+.++.++. +++..|+++.|+|.-+...+...+ -.. + .| .+.++- ..+ |++.+|.++++++.
T Consensus 140 e~~i~~LA-----------~p~aNILlPrPGfp~Y~~~a~~~~-lEV-R-~y-dlLPe~~weI---DL~~veal~DENT~ 201 (447)
T KOG0259|consen 140 ELAISSLA-----------NPGANILLPRPGFPLYDTRAIYSG-LEV-R-YY-DLLPEKDWEI---DLDGVEALADENTV 201 (447)
T ss_pred HHHHHHhc-----------CCCCceecCCCCCchHHHhhhhcC-cee-E-ee-cccCccccee---chHHHHHhhccCee
Confidence 99998765 278899999999965543322211 111 0 11 112221 111 89999999998899
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-ccccc-CCcccEE--EecccCC-Cccc
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-GIFPDIM--TLAKPLA-GGLP 322 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~-~~~pdi~--t~sK~lg-~G~~ 322 (465)
|+|+++|.|+.|++ ++.+-|++|+++|+++++++|.||||..+.+.+..| ....+ .+.|-+. .+||.+- .|||
T Consensus 202 AivviNP~NPcGnV--ys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWR 279 (447)
T KOG0259|consen 202 AIVVINPNNPCGNV--YSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWR 279 (447)
T ss_pred EEEEeCCCCCCccc--ccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCce
Confidence 99999999999865 599999999999999999999999998865555433 33333 4566554 3678765 6999
Q ss_pred eeeEEeCHH--------HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-
Q 012368 323 IGAALVTEK--------VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK- 393 (465)
Q Consensus 323 iG~v~~~~~--------i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~- 393 (465)
+||++.... +++.+.. ....+...+.+.|+|.-..|+.- .+++.++.....+.-.+...+.+++.|.+.
T Consensus 280 lGWi~~hD~~gvf~~~~~~q~~~~-~~~~~~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na~l~y~~Lk~IP~l~c 357 (447)
T KOG0259|consen 280 LGWIALHDPRGVFRDTKVVQGIKN-FLDIIPGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNADLCYSRLKDIPCLTC 357 (447)
T ss_pred eeeEEEecccccccchHHHHHHHH-HHhccCCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhHHHHHHHHhcCCCccc
Confidence 999986431 1122221 11234455667777766666632 245655555555555555556677778666
Q ss_pred eeeccceEEE-EEec-------CChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 394 DVRGLGLIIG-IEFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 394 ~~~~~g~~~~-i~~~-------~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+++.|.++. +.++ .+...|+..|. |+.+++.|+. ..+++|++ ++...+.++++++||+++..+..
T Consensus 358 p~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 358 PVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred CcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHHHHHHHHHHHHhhh
Confidence 6777777654 3332 35567888886 6788888874 36899995 46688899999999999887654
Q ss_pred h
Q 012368 462 S 462 (465)
Q Consensus 462 ~ 462 (465)
+
T Consensus 436 ~ 436 (447)
T KOG0259|consen 436 K 436 (447)
T ss_pred h
Confidence 3
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=213.26 Aligned_cols=293 Identities=12% Similarity=0.083 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHhhc----CCCeEE--ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 140 IPQIELAKRLVACS----FADRVF--FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 140 ~~~~~la~~l~~~~----~~~~v~--~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+.++++++++.+.. .+++|+ .|+||++|+..++.+++.+.. +++.|++.+|+|+++...+...+..
T Consensus 76 ~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~--------~Gd~Vlv~~P~y~~~~~~~~~~G~~ 147 (404)
T PTZ00376 76 SFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLP--------AGTTVYVSNPTWPNHVNIFKSAGLN 147 (404)
T ss_pred HHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHcCCc
Confidence 34556666654433 256888 489999999998876555443 6899999999999988665554433
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--C-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--G-KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~-~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
.... ++..+..+ -.|++.++++++. . +...++++|.||+| ..++++.+++|.++|++||+++|+||+|.
T Consensus 148 ~~~v----~l~~~~~~--~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~ 219 (404)
T PTZ00376 148 VKEY----RYYDPKTK--GLDFDGMLEDLRTAPNGSVVLLHACAHNPTG--VDPTEEQWKEIADVMKRKNLIPFFDMAYQ 219 (404)
T ss_pred eeec----cccCcccC--CcCHHHHHHHHHhCCCCCEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhCCcEEEEehhhc
Confidence 2211 22111000 0178889888852 2 23333456666665 45699999999999999999999999999
Q ss_pred CCCCCCc---c---ccccc-cCCcccEEEecccCC-CccceeeE---EeCHHHHhhccCC---CCcCCC-CChHHHHHHH
Q 012368 291 GLGRTGY---L---WAHEH-YGIFPDIMTLAKPLA-GGLPIGAA---LVTEKVASAINYG---DHGSTF-AGSPLVCNAA 355 (465)
Q Consensus 291 g~gr~g~---~---~~~~~-~~~~pdi~t~sK~lg-~G~~iG~v---~~~~~i~~~~~~~---~~~~t~-~~~~~~~~aa 355 (465)
+|...+. . ..+.. .+...-+.+|||.++ .|+|+||+ ++++++++.+... ....++ +.+++++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~ 299 (404)
T PTZ00376 220 GFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIA 299 (404)
T ss_pred CccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHH
Confidence 8854331 1 11111 112234458999999 69999998 5687755543210 112233 3567888888
Q ss_pred HHHHHHhcC-chH-------HHHHHHHHHHHHHHHHHHHHcCC-Cceee-eccceEEEEEecCChHHHHHHHHHC-CceE
Q 012368 356 IAVLDKISN-PAF-------LASVSKKGHYFKETLKQKLARNP-HVKDV-RGLGLIIGIEFDVSATPVVDACRDS-GLLV 424 (465)
Q Consensus 356 ~a~L~~~~~-~~~-------~~~~~~~~~~l~~~l~~~~~~~~-~~~~~-~~~g~~~~i~~~~~~~~~~~~l~~~-Gv~v 424 (465)
.++|+...- +.+ .++++++.+.+.+.|.+. ..+ .+... +..|.++|+.+ ..+++++|+++ ||++
T Consensus 300 ~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~--~~~~~~~~~~p~gg~f~~~~~---~~~~~~~L~~~~~v~v 374 (404)
T PTZ00376 300 DRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKAL--GSPGDWEHIINQIGMFSFTGL---TKEQVERLIEKYHIYL 374 (404)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcccccccCceEEEecCC---CHHHHHHHHHhCCEee
Confidence 888853110 112 223334444444444332 111 12222 23355666655 35788888876 9999
Q ss_pred eecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 425 LTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 425 ~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.|++ |++++. .+.++++.++++|++++..
T Consensus 375 ~p~~-----Ris~~~-~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 375 LDNG-----RISVAG-LTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred cCCC-----eEEEec-cCHHhHHHHHHHHHHHHhc
Confidence 8862 887643 6899999999999988753
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=217.42 Aligned_cols=325 Identities=13% Similarity=0.063 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHhhc-c-----cccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 012368 117 ADWIKAVVDQANVL-T-----HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDS 186 (465)
Q Consensus 117 p~v~~a~~~~~~~~-~-----~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~ 186 (465)
.++++++.+.+... . +....+..+.++.+++++.++.+ +++|++|+|+++|+..+++++..
T Consensus 143 ~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~--------- 213 (534)
T PLN02231 143 ADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--------- 213 (534)
T ss_pred HHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc---------
Confidence 35666555655541 1 11122233446677777766544 78999999999999999997752
Q ss_pred CCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC------CCeEEEEEcccCCCCC
Q 012368 187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP------GKTAAVFVEPIQGEGG 260 (465)
Q Consensus 187 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~------~~~a~vi~ep~~~~~G 260 (465)
++++.|++.+|+|.++.......+...... ++..+..+ .-|+++|+++++. ...++++++|.|++|
T Consensus 214 -~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~----~l~~~~~~--~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG- 285 (534)
T PLN02231 214 -SEKDGILCPIPQYPLYSASIALHGGTLVPY----YLDEATGW--GLEISELKKQLEDARSKGITVRALVVINPGNPTG- 285 (534)
T ss_pred -CCCCEEEEeCCCChhHHHHHHHcCCEEEEE----ecCcccCC--CCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCC-
Confidence 157899999999998876554444322111 11111100 0278999988852 233467777876666
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC-Cccc-ccccc----CC---cccEE---EecccC-C-CccceeeE
Q 012368 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-GYLW-AHEHY----GI---FPDIM---TLAKPL-A-GGLPIGAA 326 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~-g~~~-~~~~~----~~---~pdi~---t~sK~l-g-~G~~iG~v 326 (465)
.+++++.+++|.++|++||++||+||+|..+.+. +..+ .+... +. ...++ +|||.+ + .|+|+||+
T Consensus 286 -~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~ 364 (534)
T PLN02231 286 -QVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 364 (534)
T ss_pred -cCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEE
Confidence 4569999999999999999999999999987543 2211 11110 11 11233 789987 4 49999999
Q ss_pred Ee---CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc--Cc---hHHH---HHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 327 LV---TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--NP---AFLA---SVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 327 ~~---~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--~~---~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
++ ++++++.+.... ..+.+.+.+++.++..+++.-. ++ .+.+ .+++..+..++.+.+.+..++.+...
T Consensus 365 ~~~~~~~~l~~~l~k~~-~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~ 443 (534)
T PLN02231 365 EVTGFTSDVREQIYKVA-SVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCN 443 (534)
T ss_pred EEecCCHHHHHHHHHHH-hhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 86 678888775432 2345567778888777774210 11 1111 12222333333444444455545555
Q ss_pred eccceEEEE-Eec--C------------ChHHHHHHHH-HCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHH
Q 012368 396 RGLGLIIGI-EFD--V------------SATPVVDACR-DSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 396 ~~~g~~~~i-~~~--~------------~~~~~~~~l~-~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
++.|.|+.+ .+. . ....++..|+ +.||.+.|+.. ...+|+++ ..+++++++++++|
T Consensus 444 ~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~--~~~~e~l~eal~RL 521 (534)
T PLN02231 444 KAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVSRL 521 (534)
T ss_pred CCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe--CCCHHHHHHHHHHH
Confidence 555655544 332 1 1223556666 57999998741 13578764 57899999999999
Q ss_pred HHHHHHhhh
Q 012368 454 CKTLPVLDS 462 (465)
Q Consensus 454 ~~~l~~~~~ 462 (465)
.++++++.+
T Consensus 522 ~~~~~~~~~ 530 (534)
T PLN02231 522 TEFHKSFMD 530 (534)
T ss_pred HHHHHHHHH
Confidence 999887654
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-23 Score=205.75 Aligned_cols=331 Identities=15% Similarity=0.146 Sum_probs=211.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-------HHHHHHHHHHHhhcC---CCeEEecCCHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-------IPQIELAKRLVACSF---ADRVFFSNTGTE 166 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~la~~l~~~~~---~~~v~~~~sG~e 166 (465)
+..|+|..+. |..++.|.+++.+.+............ ....++++.++++++ .++|++++|+++
T Consensus 16 ~~iyld~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 4578886653 446788999998887542111111111 224568888888887 368999999999
Q ss_pred HHHHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCcccCccccc---cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhc
Q 012368 167 ANEAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242 (465)
Q Consensus 167 A~~~al~~a~~-~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 242 (465)
++..++..... .. .++++||+.++.|++...... ...+.... ..+...+.. .|++++++++
T Consensus 90 ~l~~~~~~~~~~~~--------~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~---~v~~~~~~~----~~~~~l~~~i 154 (398)
T TIGR03392 90 SINLVAQSYARPRL--------QPGDEIIVSEAEHHANLIPWLMVAQQTGAKVV---KLPIGADLL----PDIRQLPELL 154 (398)
T ss_pred HHHHHHHHhhhccC--------CCCCEEEECCcchhHHHHHHHHHHHHcCcEEE---EEecCCCCC----cCHHHHHHHh
Confidence 99998886531 01 157899999999886432111 11111110 011111111 2789999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCc
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGG 320 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G 320 (465)
++ ++++|++..+++.+|.+.+ +++|.++|+++|+++|+|++|. +|.. ..+.....+|+.++| |.+|.
T Consensus 155 ~~-~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~gp- 223 (398)
T TIGR03392 155 TP-RTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG----PPDVQALDIDFYAFSGHKLYGP- 223 (398)
T ss_pred cc-CceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC----CCChhhcCCCEEEEecccccCC-
Confidence 75 4566666555556676665 8899999999999999999996 3222 112223347888888 97653
Q ss_pred cceeeEEeCHHHHhhccCCCCcC------------------CC---CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012368 321 LPIGAALVTEKVASAINYGDHGS------------------TF---AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~------------------t~---~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
.++|++++++++++.+.+...+. .| +.|..+..+..++++.+.+.++ +++++....++
T Consensus 224 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~-~~i~~~~~~l~ 302 (398)
T TIGR03392 224 TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDI-AAAEAWSVSLA 302 (398)
T ss_pred CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHH
Confidence 34899999999887775421110 01 2344566677777776644332 23444444455
Q ss_pred HHHHHHHHcCCCceee-eccceEEEEEec-CChHHHHHHHHHCCceEeecC-----------CCCEEEEecCCCCcHHHH
Q 012368 380 ETLKQKLARNPHVKDV-RGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQEL 446 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~-~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------~~~~lRi~~~~~~t~e~i 446 (465)
+.+.+.+.+.+.+... ...+.++.+.++ ....++.+.|.++||.+.++. .++++|++++..+|++|+
T Consensus 303 ~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei 382 (398)
T TIGR03392 303 DLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDV 382 (398)
T ss_pred HHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHH
Confidence 5555544455432222 123445666653 456789999999999998653 136899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 012368 447 DQAVEILCKTLPVL 460 (465)
Q Consensus 447 ~~~l~~l~~~l~~~ 460 (465)
+++++.|+++++.+
T Consensus 383 ~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 383 DALVDAVGAALELL 396 (398)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=216.76 Aligned_cols=339 Identities=14% Similarity=0.068 Sum_probs=198.2
Q ss_pred EEecccCcccccCCCCCHH-HHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhh-c-C------CCeEEecCCHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDAD-WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVAC-S-F------ADRVFFSNTGTEANEA 170 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~-~-~------~~~v~~~~sG~eA~~~ 170 (465)
.+++..+.+ |...|+ |.+ +.+++....+....+..+.++++++++.+. + + .++|++|+|+++|+..
T Consensus 102 ~i~l~~g~p----~~~~~~~v~e-~~~~~~~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~ 176 (527)
T PRK09275 102 AVSYVRDQL----GFDADEFVYE-LVDGIIGDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCY 176 (527)
T ss_pred HHhhcCCCC----CCCCCHHHHH-HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHH
Confidence 455555433 444444 555 555553222222222334466666644332 1 1 2389999999999999
Q ss_pred HHHHHHH--HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 171 AIKFARK--FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 171 al~~a~~--~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
++.++.. .. +++|+|++++|+|..+...+...+...... + .+..++..+. .|+++++++++++..+
T Consensus 177 ~~~aL~~~~ll--------~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v-~-v~~~~~~~f~--~d~~~l~~~~~~~tka 244 (527)
T PRK09275 177 IFDSLKENGLL--------KAGDKIALMTPIFTPYLEIPELPRYDLEVV-H-INADEENEWQ--YPDSELEKLRDPSIKA 244 (527)
T ss_pred HHHHHhhhhcC--------CCCCEEEEeCCChHHHHHHHHHcCCCeEEE-E-eecCcccCCC--CCHHHHHhhcCCCCCE
Confidence 8885321 11 279999999999998875543322111100 0 0111111111 2789999988765556
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCcccccccc-CCcccEEEecccCCC-cccee
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHY-GIFPDIMTLAKPLAG-GLPIG 324 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~g~~~~~~~~-~~~pdi~t~sK~lg~-G~~iG 324 (465)
+++++|.||+| .+.+++.+++|.++|++ +|++||+||+|..|.. ......... +...-+-+|||.++. |||+|
T Consensus 245 i~l~nP~NPTG--~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG 321 (527)
T PRK09275 245 LFLVNPSNPPS--VAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD-DFRSLFAVLPYNTILVYSFSKYFGATGWRLG 321 (527)
T ss_pred EEEeCCcCCcC--CCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc-cccCHHHhCCCCEEEEeehhhhccCcHhHHh
Confidence 66778887776 34589999999999965 5999999999998742 111111111 122334479999984 99999
Q ss_pred eEEeCHH-----HHhhc--------------------------------cCCCCcCCCCChHHHHHH-H----HHHHHHh
Q 012368 325 AALVTEK-----VASAI--------------------------------NYGDHGSTFAGSPLVCNA-A----IAVLDKI 362 (465)
Q Consensus 325 ~v~~~~~-----i~~~~--------------------------------~~~~~~~t~~~~~~~~~a-a----~a~L~~~ 362 (465)
|++++++ +++.+ .......+.+.+.+.|.+ + .++|+
T Consensus 322 ~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~-- 399 (527)
T PRK09275 322 VIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLD-- 399 (527)
T ss_pred hhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh--
Confidence 9999876 33322 111234556667677765 3 22333
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC------------------ChHHHHHHHHH-CCce
Q 012368 363 SNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV------------------SATPVVDACRD-SGLL 423 (465)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~------------------~~~~~~~~l~~-~Gv~ 423 (465)
..+.+.+..++..+..++.+.+.+ ..+.....+..+.++++++.. +..+++.+|++ .||.
T Consensus 400 ~~~~~~~~~~~~~~~Rr~~l~~~L-g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~ 478 (527)
T PRK09275 400 EEDAYKKAMKDIIRRRYKALYEGL-GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVV 478 (527)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHc-CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEE
Confidence 123444444444444344443332 122111123334555565521 34567777774 5999
Q ss_pred EeecCC----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 424 VLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 424 v~~~~~----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
+.|+.. .+++|+++. ..+++++.++.++|.+++.+..+
T Consensus 479 v~PG~~Fg~~~~~vRis~a-~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 479 LLPGGGFGGPEWSVRVSLA-NLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred EeCchhhCCCCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 988742 357998653 25889999999999999987653
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=212.65 Aligned_cols=300 Identities=17% Similarity=0.103 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhhcC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 140 IPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 140 ~~~~~la~~l~~~~~------~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+.++++++++.+.++ +++|++|+|+++|++.+++++. +++|.|++.+|+|.++........+.
T Consensus 98 ~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~-----------~pGD~Vlv~~P~Y~~~~~~~~~~~G~ 166 (496)
T PLN02376 98 KFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA-----------DPGDVFLIPSPYYAAFDRDLRWRTGV 166 (496)
T ss_pred HHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC-----------CCCCEEEECCCCccchHHHHHhhCCC
Confidence 346677777765432 6899999999999999988665 27899999999999887544322222
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcC-----CCCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-----PGKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-----~~~~-a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
.... .+......+ --|+++++++++ ..++ ++++++|.||+| .+++.+.+++|.++|++||++||+||
T Consensus 167 ~vv~---v~~~~~~~~--~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG--~~~s~e~l~~L~~~a~~~~i~lI~DE 239 (496)
T PLN02376 167 EIIP---VPCSSSDNF--KLTVDAADWAYKKAQESNKKVKGLILTNPSNPLG--TMLDKDTLTNLVRFVTRKNIHLVVDE 239 (496)
T ss_pred EEEE---EeCCCCccC--cCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--ccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 1111 111110000 016777765532 1234 466677777665 45689999999999999999999999
Q ss_pred cccCCCCCCccc-cc-cc---cC---Cccc----EEEecccCC-CccceeeEEeC-HHHHhhccCCCCcCCCCChHHHHH
Q 012368 288 VQCGLGRTGYLW-AH-EH---YG---IFPD----IMTLAKPLA-GGLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCN 353 (465)
Q Consensus 288 v~~g~gr~g~~~-~~-~~---~~---~~pd----i~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~ 353 (465)
+|..+.+.+..+ .. .. ++ ..++ +.+|||.+| .|+|+||++++ +.+.+.+... ......+.+++.
T Consensus 240 iY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~--~~~~~vs~~~Q~ 317 (496)
T PLN02376 240 IYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKM--SSFGLVSSQTQL 317 (496)
T ss_pred CccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHH--hhcCCCCHHHHH
Confidence 999864444221 11 11 11 1223 337999998 69999999985 5565554321 122236778888
Q ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------ChHHHHHHHHH-CCc
Q 012368 354 AAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRD-SGL 422 (465)
Q Consensus 354 aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------~~~~~~~~l~~-~Gv 422 (465)
++.+.|+...- +.+.++.++..+..++.+.+.+.+.+.....+..|+|+|++++. ...++++.|++ .||
T Consensus 318 a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV 397 (496)
T PLN02376 318 MLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKL 397 (496)
T ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCE
Confidence 88777752111 22333334334444444444454444222223456889998831 12567787876 599
Q ss_pred eEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 423 LVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 423 ~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.|+.. .+++|+++.. .+++++++++++|.+++.+.
T Consensus 398 ~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~~ 439 (496)
T PLN02376 398 NVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVSKN 439 (496)
T ss_pred EEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHHHh
Confidence 9998631 3689997653 46899999999999998643
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=194.14 Aligned_cols=325 Identities=18% Similarity=0.165 Sum_probs=234.1
Q ss_pred CEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAA 171 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~a 171 (465)
+++-=++||.+ ||- .||+|.+|+.+.+++.+.+.+ .+.+....+|++.|+++++.+..++++|..-||+..
T Consensus 171 k~VtVWCSNDY---Lgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDst 247 (570)
T KOG1360|consen 171 KKVTVWCSNDY---LGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDST 247 (570)
T ss_pred CceEEEecCcc---ccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchH
Confidence 34445677666 443 789999999999998544322 134555889999999999988888889999999887
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---CCCeE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGKTA 248 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~a 248 (465)
+-.+.+. -.+.+|..+...|.+....+..++.+. .++.+||+++|+++|+ +..++
T Consensus 248 LftLak~----------lpgcei~SD~gNHASMI~GIrns~v~K------------~IFrHND~~hL~~lL~~~~~svPK 305 (570)
T KOG1360|consen 248 LFTLAKK----------LPGCEIFSDEGNHASMIQGIRNSRVPK------------HIFRHNDLDHLEQLLQSSPKSVPK 305 (570)
T ss_pred HHHHHHH----------CCCcEEeccccchHHHHHHhhhcCCcc------------eeeccCCHHHHHHHHHhCCCCCCc
Confidence 7644322 245678888888888766555443322 3467899999999997 34568
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc--ccccccCC--cccEE--EecccCCCccc
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL--WAHEHYGI--FPDIM--TLAKPLAGGLP 322 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~--~~~~~~~~--~pdi~--t~sK~lg~G~~ 322 (465)
+|-+|.+.++.|.+.| |++|.+++++||++-.+|||+. .|-.|.. +.-++.|+ +.||+ |++|+||. -
T Consensus 306 ivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc--V 378 (570)
T KOG1360|consen 306 IVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC--V 378 (570)
T ss_pred eEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhccc--c
Confidence 8999999999999988 9999999999999999999987 4444542 23455565 56887 69999985 2
Q ss_pred eeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHcCCCceeeec
Q 012368 323 IGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLARNPHVKDVRG 397 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 397 (465)
.||+.+...+++.++... +..|.+.+|..++.|+++.+++..+ .+...-+++..++++.|.++ .+|. ++.
T Consensus 379 GGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~--GiPV---i~~ 453 (570)
T KOG1360|consen 379 GGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL--GIPV---IPN 453 (570)
T ss_pred cceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc--CCcc---cCC
Confidence 278889999999887543 3345567899999999999988643 23333344555555555443 3343 233
Q ss_pred cceEEEEEec--CChHHHHHHHH-HCCceEeec-------CCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 398 LGLIIGIEFD--VSATPVVDACR-DSGLLVLTA-------GKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 398 ~g~~~~i~~~--~~~~~~~~~l~-~~Gv~v~~~-------~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..-++-+.+. ..+.++++.|+ ++||++..- |. ..+||.|.-.||.+-++.+++.+..+..++
T Consensus 454 pSHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~-E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 454 PSHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGT-ERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred CcceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccc-eeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3444555542 23456677776 679998643 32 569999999999999999999999998875
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=207.99 Aligned_cols=316 Identities=18% Similarity=0.131 Sum_probs=200.3
Q ss_pred CcccccCCCCCHHHHHHHHHHHhhcccccCC-------CCCHHHHHHHHHHHhhcCCC--eEEecCCHHHHHHHHHHHHH
Q 012368 106 GIAVNALGHGDADWIKAVVDQANVLTHVSNM-------YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 106 ~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~la~~l~~~~~~~--~v~~~~sG~eA~~~al~~a~ 176 (465)
+.+....||++|++++++.++. .....+.. +..+...++++++++.++.+ .+.++++|+++.+.++..++
T Consensus 24 ~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~ 102 (398)
T cd00613 24 FLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAI 102 (398)
T ss_pred cccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHH
Confidence 3344567999999988876665 22111111 12234678999999988743 78888877777777766665
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEE
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi 251 (465)
...+ +++.|++.++ +|+.........+... ...+..+|. .|++++++++.+ ++++|+
T Consensus 103 ~~~~--------~gd~Vl~~~~-~h~~~~~~~~~~~~~~--------g~~~~~v~~~~~~~~d~~~l~~~i~~-~t~~vi 164 (398)
T cd00613 103 RAYH--------KRNKVLVPDS-AHPTNPAVARTRGEPL--------GIEVVEVPSDEGGTVDLEALKEEVSE-EVAALM 164 (398)
T ss_pred hccc--------CCCEEEEcCc-cCcchHHHHHHhcccC--------CcEEEEeccCCCCCcCHHHHHHhcCC-CeEEEE
Confidence 3211 2677776665 6666655544332110 011222222 278999999965 578888
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCC----Cccceee
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLA----GGLPIGA 325 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg----~G~~iG~ 325 (465)
+++.+ ++|.+. +++++|+++|++||+++|+|+++......+. ...+ .+|+++ ++|++. ||+++|+
T Consensus 165 v~~~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~~---~~~~--~~d~~~~s~~K~~~p~g~Ggp~~g~ 235 (398)
T cd00613 165 VQYPN-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLKP---PGEY--GADIVVGNLQKTGVPHGGGGPGAGF 235 (398)
T ss_pred EECCC-CCceec---chHHHHHHHHHhcCCEEEEEeccccccCCCC---hHHc--CCCEEEeeccccCCCCCCCCCceeE
Confidence 88765 456652 5679999999999999999998763211111 1122 367764 568762 3588999
Q ss_pred EEeCHHHHhhccCC-----------------------------CCcCCCCChHHHHHHHHHHHHHhcCc---hHHHHHHH
Q 012368 326 ALVTEKVASAINYG-----------------------------DHGSTFAGSPLVCNAAIAVLDKISNP---AFLASVSK 373 (465)
Q Consensus 326 v~~~~~i~~~~~~~-----------------------------~~~~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~ 373 (465)
+++++++++.+.+. ....+++++++.+.++.++++.+.++ ++.+++++
T Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~ 315 (398)
T cd00613 236 FAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHL 315 (398)
T ss_pred EEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99998887765221 11234566677777777777766443 34567777
Q ss_pred HHHHHHHHHHHHHHcCCCceeee-ccceEEEEEecC----ChHHHHHHHHHCCceEeecC--CCCEEEEecCCCCcHHHH
Q 012368 374 KGHYFKETLKQKLARNPHVKDVR-GLGLIIGIEFDV----SATPVVDACRDSGLLVLTAG--KGNVVRLVPPLIISEQEL 446 (465)
Q Consensus 374 ~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~--~~~~lRi~~~~~~t~e~i 446 (465)
+.+++++.|+++ +...... .....+++.++. ...++++.|+++||++.... .++.+|++|++.+|++||
T Consensus 316 ~~~~l~~~L~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edi 391 (398)
T cd00613 316 NANYLAKRLKEV----GGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEEL 391 (398)
T ss_pred HHHHHHHHHHhc----CCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHH
Confidence 777777777664 2111111 111223444432 35679999999999876531 237899999999999999
Q ss_pred HHHHHHH
Q 012368 447 DQAVEIL 453 (465)
Q Consensus 447 ~~~l~~l 453 (465)
|++++.|
T Consensus 392 d~~~~~L 398 (398)
T cd00613 392 DALLEAL 398 (398)
T ss_pred HHHHHhC
Confidence 9998864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=210.81 Aligned_cols=332 Identities=14% Similarity=0.088 Sum_probs=198.9
Q ss_pred EEEecccCcccccCCCCC--HHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcC----CCeE--EecCCHHHH
Q 012368 99 EYLDLSSGIAVNALGHGD--ADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----ADRV--FFSNTGTEA 167 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~--p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~~v--~~~~sG~eA 167 (465)
..|||..|.++.+-++.+ +.+.+++.+.++... +....+..+.++++++++.+..+ .++| ++|+|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 458888876533333333 678888877664321 22222333446666666654432 5666 999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-C-CCceEeeCCCHHHHHhhcCC-
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-M-PGVNFVEYGNIEATRKLIQP- 244 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~d~~~le~~l~~- 244 (465)
+.+++++.... +++|.|++.+|+|.++...+...+...... +. . .+.. .|++++++.++.
T Consensus 107 l~~~~~~l~~~---------~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v----~~~~~~~~~----~d~~~l~~~~~~~ 169 (396)
T PRK09257 107 LRVGADFLKRA---------FPDAKVWVSDPTWPNHRAIFEAAGLEVKTY----PYYDAATKG----LDFDAMLADLSQA 169 (396)
T ss_pred HHHHHHHHHHh---------CCCCeEEECCCCcccHHHHHHHcCCcEEEE----eccccccCc----cCHHHHHHHHHhC
Confidence 99998755321 168999999999999876655544332211 11 0 1111 278999888752
Q ss_pred CCeEEEE--EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC-Cc-ccc---ccc-cCCcccEEEeccc
Q 012368 245 GKTAAVF--VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-GY-LWA---HEH-YGIFPDIMTLAKP 316 (465)
Q Consensus 245 ~~~a~vi--~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~-g~-~~~---~~~-~~~~pdi~t~sK~ 316 (465)
.....++ .+|.||+| ..++++.+++|.++|++||+++|+||+|.+|... +. ... +.. .+...-+.+|||.
T Consensus 170 ~~~~~~~i~~~p~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~ 247 (396)
T PRK09257 170 PAGDVVLLHGCCHNPTG--ADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKN 247 (396)
T ss_pred CCCCEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCc
Confidence 1212333 34444444 4569999999999999999999999999988542 11 111 111 1123344589999
Q ss_pred CCC-ccceeeEEe---CHH----HHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-C---chHHHHHHHHHHHHHHHHHH
Q 012368 317 LAG-GLPIGAALV---TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-N---PAFLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 317 lg~-G~~iG~v~~---~~~----i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~---~~~~~~~~~~~~~l~~~l~~ 384 (465)
++. |+|+||+++ +++ ++..+.........+.+++++.++.+.|+... . +++.+++++..+..++.+.+
T Consensus 248 ~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~ 327 (396)
T PRK09257 248 FGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVE 327 (396)
T ss_pred CccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 999999973 333 33333221222334457788888777775321 0 22333344444444444444
Q ss_pred HHHcCC---Ccee-eeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 385 KLARNP---HVKD-VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 385 ~~~~~~---~~~~-~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.+.++. .+.. .+..|.++|+.+ +...+.+.+.++||.+.|. + ||+++ ..++++|++++++|.+++
T Consensus 328 ~L~~~~~~~~~~~~~p~gg~~~w~~l--~~~~~~~l~~~~~V~~~p~---~--ri~~~-~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 328 ALKAKGPSRDFDFIARQRGMFSYSGL--TPEQVDRLREEFGVYAVGS---G--RINVA-GLNESNIDYVAEAIAAVL 396 (396)
T ss_pred HHHhcCCCCCcccccccceEEEecCC--CHHHHHHHHHcCCEEEcCC---C--eEEEe-eCCHHHHHHHHHHHHhhC
Confidence 444432 1222 234467777765 3333344445779998773 2 77664 378999999999998753
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=210.95 Aligned_cols=296 Identities=17% Similarity=0.131 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhhcC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC
Q 012368 141 PQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (465)
Q Consensus 141 ~~~~la~~l~~~~~------~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (465)
.+.++++.+.+.++ +++|++|+|+++|+++++.++. +++|.|++.+|.|+++........+..
T Consensus 100 LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~-----------~pGD~Vlv~~P~Y~~f~~~~~~~~g~~ 168 (447)
T PLN02607 100 FRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA-----------DPGDALLVPTPYYPGFDRDLRWRTGVK 168 (447)
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHhcCCcE
Confidence 35666666665432 6789999999999999877554 278999999999988875443222211
Q ss_pred CcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 012368 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV 288 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~-a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv 288 (465)
.... +......+. .|+++++++++. .++ ++++++|.||+| .+++++.+++|.++|++|+++||+||+
T Consensus 169 vv~v---~~~~~~~f~--~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG--~~~s~e~l~~l~~~~~~~~i~lI~DEi 241 (447)
T PLN02607 169 IVPI---HCDSSNNFQ--VTPQALEAAYQEAEAANIRVRGVLITNPSNPLG--ATVQRSVLEDILDFVVRKNIHLVSDEI 241 (447)
T ss_pred EEEE---eCCCCCCCc--CCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcC--cccCHHHHHHHHHHHHHCCCEEEEecc
Confidence 1110 111111110 278888888752 234 466677777665 456899999999999999999999999
Q ss_pred ccCCCCCCccc-cc-c---ccC---Cc---ccEEEecccCC-CccceeeEEe-CHHHHhhccCCCCcCCC-CChHHHHHH
Q 012368 289 QCGLGRTGYLW-AH-E---HYG---IF---PDIMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTF-AGSPLVCNA 354 (465)
Q Consensus 289 ~~g~gr~g~~~-~~-~---~~~---~~---pdi~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~-~~~~~~~~a 354 (465)
|.++-..+..+ .. . ..+ .. .-+.+|||.+| .|+|+||+++ ++++++.+... ..+ ..+.+++.+
T Consensus 242 Ya~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~---~~~~~~s~~~q~~ 318 (447)
T PLN02607 242 YSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM---SSFTLVSSQTQHL 318 (447)
T ss_pred ccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHH---hhcCCCCHHHHHH
Confidence 98743322211 11 1 111 11 12337899998 6999999998 66776665422 222 346677777
Q ss_pred HHHHHHHhcCchHH----HHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--------ChHHHHHHHHH-CC
Q 012368 355 AIAVLDKISNPAFL----ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--------SATPVVDACRD-SG 421 (465)
Q Consensus 355 a~a~L~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~-~G 421 (465)
+...|+ ++++. +..+++....++.+.+.++++++.......|+|+|+++.. ...++++.|++ +|
T Consensus 319 ~~~~L~---d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~g 395 (447)
T PLN02607 319 LASMLS---DEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVK 395 (447)
T ss_pred HHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCC
Confidence 777665 33332 2223322233333444444444322223457889998831 12367777775 69
Q ss_pred ceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 422 LLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 422 v~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|.+.|+.. .+++|++++. .+++++++++++|.+++.+.+
T Consensus 396 V~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~~~ 439 (447)
T PLN02607 396 LNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDRRK 439 (447)
T ss_pred EEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 99988631 4789997653 478999999999999997654
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=204.62 Aligned_cols=291 Identities=18% Similarity=0.164 Sum_probs=192.7
Q ss_pred HHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012368 141 PQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 141 ~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
.+..+++.+...++ .+.+++++||++|+..+++.+.. ++++|++.+++|+++...+...+.....
T Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~-----------~g~~vl~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T cd00609 41 LREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN-----------PGDEVLVPDPTYPGYEAAARLAGAEVVP 109 (350)
T ss_pred HHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC-----------CCCEEEEcCCCchhHHHHHHHCCCEEEE
Confidence 35555555555433 56899999999999999987752 5789999999998776544333211110
Q ss_pred CCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC
Q 012368 217 RSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g 296 (465)
.+........ .+.+.++.... .++++|++++.+++.|.+ .+.+.+++|.++|+++|+++|+||+|+++...+
T Consensus 110 ----i~~~~~~~~~--~~~~~~~~~~~-~~~~~v~i~~~~~~tG~~-~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~ 181 (350)
T cd00609 110 ----VPLDEEGGFL--LDLELLEAAKT-PKTKLLYLNNPNNPTGAV-LSEEELEELAELAKKHGILIISDEAYAELVYDG 181 (350)
T ss_pred ----EecccccCCc--cCHHHHHhhcC-ccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHhCCeEEEEecchhhceeCC
Confidence 0111111000 01245555554 467888888876666764 578889999999999999999999999876544
Q ss_pred ccc----cccccCCcccEEEecccCC-CccceeeEEeCH-HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHH
Q 012368 297 YLW----AHEHYGIFPDIMTLAKPLA-GGLPIGAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370 (465)
Q Consensus 297 ~~~----~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~ 370 (465)
... .....+....+.+++|.++ +|+++|++++++ ++++.+.......+++.++.++.++..+|+... +..++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 259 (350)
T cd00609 182 EPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE--EHLEE 259 (350)
T ss_pred cccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH--HHHHH
Confidence 322 1222233333447899999 789999999998 788888654445567788888888888888652 23333
Q ss_pred HHHHHHHHHHHHHHHHHcCCCce-eeeccceEEEEEecC--ChHHHHHHHHHCCceEeecC-----CCCEEEEecCCCCc
Q 012368 371 VSKKGHYFKETLKQKLARNPHVK-DVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAG-----KGNVVRLVPPLIIS 442 (465)
Q Consensus 371 ~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~-----~~~~lRi~~~~~~t 442 (465)
+++.....++.+.+.+.+.+... .....|.++++.+.. ....+.+.|.++||.+.++. .+.++|++++..
T Consensus 260 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-- 337 (350)
T cd00609 260 LRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-- 337 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--
Confidence 33333333444444444444322 345667888887743 34455666667799998763 237899998877
Q ss_pred HHHHHHHHHHHH
Q 012368 443 EQELDQAVEILC 454 (465)
Q Consensus 443 ~e~i~~~l~~l~ 454 (465)
++|+++++++|+
T Consensus 338 ~~~i~~~~~al~ 349 (350)
T cd00609 338 EEELEEALERLA 349 (350)
T ss_pred HHHHHHHHHHhh
Confidence 899999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=206.04 Aligned_cols=281 Identities=13% Similarity=0.111 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
...++.+.++++++.+.+++++||++++..++..+.. +++.|++..+.++.... .+...+.
T Consensus 52 ~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~-----------~gd~Vl~~~~~h~s~~~-~~~~~g~------- 112 (370)
T TIGR02539 52 PIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCK-----------EGDWVVLDGLAHYTSYV-AAERAGL------- 112 (370)
T ss_pred HHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhC-----------CCCEEEECCcccHHHHH-HHHHcCC-------
Confidence 4667888899999988888999999999998886651 57888887777654432 2222221
Q ss_pred CCCCCCceEeeCC-------CHHHHHhhcCC------CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012368 221 EPVMPGVNFVEYG-------NIEATRKLIQP------GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 221 ~~~~~~~~~~~~~-------d~~~le~~l~~------~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
.+..+|++ |+++|++++++ .++.+|+++.+++..|.+.+ +++|.++|++||+++|+||
T Consensus 113 -----~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDe 183 (370)
T TIGR02539 113 -----NVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNC 183 (370)
T ss_pred -----EEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEEC
Confidence 12223332 89999998852 24556666655566677665 8899999999999999999
Q ss_pred cccCCCCCCccccccccCCcccE--EEecccCCCccceeeEEeCHHHHhhccCCCCcCCC--------CChHHHHHHHHH
Q 012368 288 VQCGLGRTGYLWAHEHYGIFPDI--MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTF--------AGSPLVCNAAIA 357 (465)
Q Consensus 288 v~~g~gr~g~~~~~~~~~~~pdi--~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~--------~~~~~~~~aa~a 357 (465)
+|. +|..+.. ...++ +|+ .+++|++++|.|+|++++++++++.+........+ .....++.++.+
T Consensus 184 a~~-~g~~~~~--~~~~~--~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (370)
T TIGR02539 184 AYT-VGRMPVS--AKEIG--ADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMA 258 (370)
T ss_pred ccc-cCCcCCC--HHHcC--CCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHH
Confidence 997 3332211 11122 454 47899999877899999999999988643211111 111225556666
Q ss_pred HHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCc--eeeeccceEEEEEecC----------ChHHHHHHHHHCCce-
Q 012368 358 VLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHV--KDVRGLGLIIGIEFDV----------SATPVVDACRDSGLL- 423 (465)
Q Consensus 358 ~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~- 423 (465)
+++...+ -+...+..++.+++++.|+++ +.. ...++...++.++++. ....+.+.|+++||+
T Consensus 259 al~~~~~~l~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ 334 (370)
T TIGR02539 259 SFPHVVERVKRWDEEVKKTRWFVAELEDI----GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHG 334 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcc
Confidence 6654211 111222233344566666553 321 1123456677666531 234688999999997
Q ss_pred EeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 424 VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 424 v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+.++. ++++|+++ ..++++|+++++++|+++++++
T Consensus 335 ir~~~-~~~iRis~-~~~t~e~i~~l~~~L~~~~~~~ 369 (370)
T TIGR02539 335 IRSGQ-TKYFKLSV-YGLTKEQVEYVVDSFEEIVEEY 369 (370)
T ss_pred ccCCc-ceEEEEEe-cCCCHHHHHHHHHHHHHHHHhc
Confidence 66543 36899997 3689999999999999887653
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-23 Score=203.37 Aligned_cols=316 Identities=17% Similarity=0.124 Sum_probs=202.9
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCCCHH--HHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 012368 114 HGDADWIKAVVDQANVLTHVSNMYYSIP--QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~~~~~~~~--~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~ 189 (465)
|++|.+++++.+++......+..++... ..+++++|++.++ .+.+++++||++|+..+++.++.... .+
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~-------~~ 103 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAK-------AE 103 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhcc-------CC
Confidence 5889999999998875322222222222 4788999999888 34689999999999999998764311 13
Q ss_pred CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 012368 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 190 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
+++|++.++++..+...+...+ ..... .+...+. ..|+++|+++++++...++++.+ ++++|.+.+ +
T Consensus 104 ~~~vl~~~~~h~s~~~~~~~~g-~~~~~---v~~~~~~----~~d~~~l~~~i~~~~~~vi~~~~-~~~tG~~~~----l 170 (371)
T PRK13520 104 KPNIVVPESAHFSFDKAADMLG-VELRR---APLDDDY----RVDVKAVEDLIDDNTIGIVGIAG-TTELGQVDP----I 170 (371)
T ss_pred CceEEecCcchHHHHHHHHHcC-ceEEE---ecCCCCC----cCCHHHHHHHHhhCCEEEEEEcC-CcCCcccCC----H
Confidence 6789988887755433221111 11100 0111111 12899999999754434444444 455677665 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCC----CCccccccccCCcccEEEec--ccCCCccceeeEEe-CHHHHhhccCCC--
Q 012368 270 QFLRDACDDAGALLVFDEVQCGLGR----TGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALV-TEKVASAINYGD-- 340 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr----~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~-~~~i~~~~~~~~-- 340 (465)
++|.++|++||+++|+||+|+++.. .+..+.... ...|.+++| |...+|+|+|+++. ++++++.+....
T Consensus 171 ~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~--~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~ 248 (371)
T PRK13520 171 PELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL--PGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPY 248 (371)
T ss_pred HHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC--CCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCcc
Confidence 9999999999999999999986521 111111111 234666543 65445789988876 555766653110
Q ss_pred --------CcCCCCChHHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC
Q 012368 341 --------HGSTFAGSPLVCNAAIAVLDKISNPA---FLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS 409 (465)
Q Consensus 341 --------~~~t~~~~~~~~~aa~a~L~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~ 409 (465)
..+|. ++..++++.++|+.+.+++ ..++..++.+++++.|+++ +..........++.+.++ +
T Consensus 249 ~~~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v~~~~~-~ 321 (371)
T PRK13520 249 LTSKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER----GFEPVIEPVLNIVAFDDP-N 321 (371)
T ss_pred ccCCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC----CCEEecCCCceEEEEecC-C
Confidence 01122 3345777778887764433 5566666666666666553 221122334556666664 5
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
..++.+.|.++||.+.++..++++|++++..+|++|++++++.|+++++
T Consensus 322 ~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 322 PDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 6789999999999998765457899998888999999999999998764
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=206.63 Aligned_cols=295 Identities=16% Similarity=0.162 Sum_probs=190.1
Q ss_pred CCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCC
Q 012368 137 YYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 137 ~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
|+++...+|++.++++++ .++|++++|+++++..+++++.. ++ +.|++.+|+|..+...+...+.
T Consensus 56 Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~-----------~g~~~vlv~~p~y~~~~~~~~~~g~- 123 (364)
T PRK04781 56 YPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCV-----------PGRDAVLVTPPVFGMYAVCARLQNA- 123 (364)
T ss_pred CCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcC-----------CCCCeEEEcCCChHHHHHHHHHcCC-
Confidence 333335688888888886 77999999999999998886642 45 6899999988644432222221
Q ss_pred CCcCCCCCCCC-CCceEeeCCCHHHHHhhc-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 214 EHYRSPFEPVM-PGVNFVEYGNIEATRKLI-QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 214 ~~~~~~~~~~~-~~~~~~~~~d~~~le~~l-~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
.... .+.. .+..+ ..|++++++.+ .++...+++++|+|++| . ..+.+.+++|.+.|+ +++++|+||+|.+
T Consensus 124 ~~~~---v~~~~~~~~~--~~d~~~l~~~~~~~~~~lv~l~~p~NPTG-~-~~~~~~~~~l~~~~~-~~~~iI~Deay~~ 195 (364)
T PRK04781 124 PLVE---VPLVDGADGF--HADVPAIVAAALASNAKLVFLCSPSNPAG-S-AIALDQIERALQALQ-GKALVVVDEAYGE 195 (364)
T ss_pred EEEE---EecCCCccCC--CcCHHHHHHHHhccCCeEEEEcCCCCCCC-C-CcCHHHHHHHHHhCC-CCcEEEEeCcchh
Confidence 1111 1110 00000 02677775554 33334444556665554 3 457888888888886 4899999999998
Q ss_pred CCCCCccc-cccccCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 292 LGRTGYLW-AHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 292 ~gr~g~~~-~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
|....... ..+.++...-+.||||.+| .|+|+||+++++++++.+... ...++.+.+++.++.++|+....+.+.+
T Consensus 196 f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 273 (364)
T PRK04781 196 FSDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRC--QAPYPVPTPCAALAEQALSAPALAVTAR 273 (364)
T ss_pred hcCCcchHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcccHHHHHH
Confidence 84321111 1122222333458999999 799999999999999988743 3457778888888888886321112222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCc-eeeeccceEEEEEecCChHHHHHHHHHCCceEeecC----CCCEEEEecCCCCcHH
Q 012368 370 SVSKKGHYFKETLKQKLARNPHV-KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG----KGNVVRLVPPLIISEQ 444 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~lRi~~~~~~t~e 444 (465)
.++ .....++.+.+.+..++.+ ...++.|+|+|++++ +..++.+.|.++||.+.++. .++++||++. +.+
T Consensus 274 ~~~-~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~-~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~---~~~ 348 (364)
T PRK04781 274 RVA-EVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD-DAEAAFQALLAAGVVVRDQRAAPRLSDALRITLG---TPE 348 (364)
T ss_pred HHH-HHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC-CHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC---CHH
Confidence 222 2233334444444455432 245667999999885 56788999999999998863 1468999754 688
Q ss_pred HHHHHHHHHHHHHH
Q 012368 445 ELDQAVEILCKTLP 458 (465)
Q Consensus 445 ~i~~~l~~l~~~l~ 458 (465)
++++++++|+++..
T Consensus 349 ~~~~l~~al~~~~~ 362 (364)
T PRK04781 349 QNDRVLAALQRTQA 362 (364)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999987543
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=212.37 Aligned_cols=342 Identities=14% Similarity=0.102 Sum_probs=197.2
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHH-HHHHhhcC-----CC--eEEecCCHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELA-KRLVACSF-----AD--RVFFSNTGTEANEAA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la-~~l~~~~~-----~~--~v~~~~sG~eA~~~a 171 (465)
.+++..+. .+..+|+++.++.+.+....+.......+..++++ +.+.+.++ .+ +|++|+|+++|+..+
T Consensus 96 ~i~l~~g~----p~~~~~~~~~~~~~~~~~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~ 171 (521)
T TIGR03801 96 IISYVIDQ----LGFDPDAFLYEMCDGIIGDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYI 171 (521)
T ss_pred HHhhcCCC----CCCCCCHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 34555443 34456677777777653221111122223344444 34444322 33 899999999999998
Q ss_pred HHHHHH--HhhhcCCCCCCCCceEEEEcCCcccCcccccccc-CCCCcCCCCCCCCC-Cc-eEeeCCCHHHHHhhcCCCC
Q 012368 172 IKFARK--FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMP-GV-NFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 172 l~~a~~--~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~d~~~le~~l~~~~ 246 (465)
+..+.. .. +++|+|++.+|+|..+...+...+ +......+..+... +. .+. -|+++++++++++.
T Consensus 172 ~~~l~~~~ll--------~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~--~d~~~l~~~~~~~~ 241 (521)
T TIGR03801 172 FDSLKANELL--------KKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQ--YPDKELEKLRDPSI 241 (521)
T ss_pred HHHHhHhhcC--------CCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCC--CCHHHHHHhcCCCC
Confidence 875321 12 268999999999988765433221 11111000000000 00 011 27889998887545
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCCCCCCcccccccc-CCcccEEEecccCC-Cccc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHY-GIFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~-~~~pdi~t~sK~lg-~G~~ 322 (465)
.++++++|.||+|. ..+++.+++|.++|++| |++||+||+|..|.. ......... +...-+.+|||.++ .|||
T Consensus 242 kai~l~nP~NPTG~--vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~~~sl~~~~~~~vI~v~SfSK~fg~~G~R 318 (521)
T TIGR03801 242 KALFVVNPSNPPSV--AMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD-DFRSLFAELPYNTIGVYSFSKYFGATGWR 318 (521)
T ss_pred cEEEEeCCCCCCCC--CCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc-cccchhhhCCCCEEEEEcchhhccCchhh
Confidence 56666888877764 45899999999999987 999999999988742 111111111 12223447999998 5999
Q ss_pred eeeEEeCHH-----HH--------hhcc------------------------CCCCcCCCCChHHHHH--H---HHHHHH
Q 012368 323 IGAALVTEK-----VA--------SAIN------------------------YGDHGSTFAGSPLVCN--A---AIAVLD 360 (465)
Q Consensus 323 iG~v~~~~~-----i~--------~~~~------------------------~~~~~~t~~~~~~~~~--a---a~a~L~ 360 (465)
+||++++++ ++ +.+. ......+.+.+.+.|. | +.+.++
T Consensus 319 lG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~ 398 (521)
T TIGR03801 319 LGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMD 398 (521)
T ss_pred hhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhc
Confidence 999999754 22 1111 0112234555555554 2 333333
Q ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC------------------ChHHHHHHHH-HCC
Q 012368 361 KISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV------------------SATPVVDACR-DSG 421 (465)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~------------------~~~~~~~~l~-~~G 421 (465)
. .+.+.+..++..+..++.+.+.+ ..+.....+..|.++++++.. +..+++.+|+ +.|
T Consensus 399 ~--~~~y~~~~~~~~~~R~~~l~~~L-g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~g 475 (521)
T TIGR03801 399 K--ENAYKAETKDICRRREKLLFRGL-GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETG 475 (521)
T ss_pred c--chhHHHHHHHHHHHHHHHHHHhc-CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCC
Confidence 1 23444444444444344443333 222111223335666666631 3456777777 569
Q ss_pred ceEeecCC----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 422 LLVLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 422 v~v~~~~~----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
|.+.|+.. ...+|+++. ..+++++.++.++|.+++.+..+
T Consensus 476 V~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 476 IVLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred EEEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99998742 356888763 36889999999999999987654
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=207.34 Aligned_cols=315 Identities=16% Similarity=0.167 Sum_probs=197.6
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF 174 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~ 174 (465)
+...+|+..|-. ++|. ++.+ .... ...|+.....+|.+.++++++ .++|++|+|+++++..++++
T Consensus 30 ~~~~~~l~~ne~--~~~~-~~~~------~~~~----~~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~ 96 (354)
T PRK04635 30 GRGDIWINANES--PFNN-EYKL------DLAR----LNRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRA 96 (354)
T ss_pred CCCcEEeeCCCC--CCCC-Chhh------hhHH----hccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHH
Confidence 345678877744 5552 2322 1111 133444446788889998887 78999999999999999886
Q ss_pred HHHHhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 175 ARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 175 a~~~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
... ++ +.|++.+|+|..+...+...+..... .+...+.. .|++.+++ + ++...+++++
T Consensus 97 ~~~-----------~g~d~vlv~~P~y~~y~~~~~~~g~~v~~----v~~~~~~~----~~~~~l~~-~-~~~~li~i~n 155 (354)
T PRK04635 97 FCE-----------PGQDSIACFGPTYGMYAISAETFNVGVKA----LPLTADYQ----LPLDYIEQ-L-DGAKLVFICN 155 (354)
T ss_pred hcC-----------CCCCeEEEcCCChHHHHHHHHHcCCEEEE----EecCCCCC----CCHHHHHh-c-cCCCEEEEeC
Confidence 542 45 88999999998765443322221110 11111111 26777763 3 3344556677
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-cccCCcccEEEecccCC-CccceeeEEeCHH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYGIFPDIMTLAKPLA-GGLPIGAALVTEK 331 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~ 331 (465)
|+|++|. ..+.+.+++|.+.|+ +++||+||+|..|......... ..+....-+.||||.+| .|+|+||++++++
T Consensus 156 P~NPTG~--~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~ 231 (354)
T PRK04635 156 PNNPTGT--VIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEE 231 (354)
T ss_pred CCCCCCc--cCCHHHHHHHHHhCC--CcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHH
Confidence 7666653 347777888887776 4999999999887422111111 11111122447999998 6999999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+... ...++.+.+.+.++.++|+....+. .++..+.....++.+.+.+.+++.+...++.|.|+++.+. +..
T Consensus 232 ~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~~~~~-~~~ 307 (354)
T PRK04635 232 LIEILMRV--IAPYPVPLPVSEIATQALSEAGLAR-MKFQVLDLNAQGARLQAALSMYGGAKVLEGNGNYVLAKFD-DVD 307 (354)
T ss_pred HHHHHHhh--cCCCCCCHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHHHHHHHhCCCceECCCCCcEEEEECC-CHH
Confidence 99887642 2346667778888888775321111 2222222222233444444444533344566888888774 567
Q ss_pred HHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
++.+.|.++||.+...+. ++++|+++ .+.+|+++++++|++.
T Consensus 308 ~~~~~l~~~gv~v~~~~~~~~~~~lRis~---~~~e~~~~l~~al~~~ 352 (354)
T PRK04635 308 AVFKALWDAGIVARAYKDPRLANCIRFSF---SNRAETDKLIGLIRNQ 352 (354)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCeEEEEe---CCHHHHHHHHHHHHHh
Confidence 788889999999976531 46899985 3789999999998753
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-22 Score=200.38 Aligned_cols=332 Identities=14% Similarity=0.130 Sum_probs=209.5
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC-------CHHHHHHHHHHHhhcC---CCeEEecCCHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY-------SIPQIELAKRLVACSF---ADRVFFSNTGTE 166 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~la~~l~~~~~---~~~v~~~~sG~e 166 (465)
+..|+|..+. |..++.|.+++.+.++.......... .....++++.++++++ .++|+|++|+++
T Consensus 19 ~~~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~ 92 (401)
T PRK10874 19 AGVYLDSAAT------ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE 92 (401)
T ss_pred ceEEEeCCcc------cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence 4578886653 44678899999888765321111111 2236678888888887 468999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc---ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (465)
++..+++.+..-. ..++++||+.++.|++....... ..+..... .+...+. ..|++++++.++
T Consensus 93 ~i~~~~~~~~~~~-------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~---v~~~~~~----~~d~~~l~~~i~ 158 (401)
T PRK10874 93 SINLVAQSYARPR-------LQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVK---LPLGADR----LPDVDLLPELIT 158 (401)
T ss_pred HHHHHHHHhhhcc-------CCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEE---EecCCCC----cCCHHHHHHhcC
Confidence 9999888653100 01578999999998764322111 11111100 1111111 127899999997
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCcc
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGL 321 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~ 321 (465)
+ ++++|++..+++.+|.+.+ +++|.++|+++|+++|+|++|. +|... .+.....+|+.++| |.+|. .
T Consensus 159 ~-~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp-~ 227 (401)
T PRK10874 159 P-RTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP----ADVQALDIDFYAFSGHKLYGP-T 227 (401)
T ss_pred c-CcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc----CCchhcCCCEEEEecccccCC-C
Confidence 5 4556665555556666665 8999999999999999999996 32221 12122346777655 96653 2
Q ss_pred ceeeEEeCHHHHhhccCCCCcC------------------CC---CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 012368 322 PIGAALVTEKVASAINYGDHGS------------------TF---AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKE 380 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~------------------t~---~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~ 380 (465)
.+|++++++++++.+.+...++ -| +.|..++.+..++++.+.+.+. +++.+....+++
T Consensus 228 G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~-~~~~~~~~~l~~ 306 (401)
T PRK10874 228 GIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDI-NQAESWSRSLAT 306 (401)
T ss_pred ccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Confidence 4699999999888765321100 01 2345566677777776543322 223444444444
Q ss_pred HHHHHHHcCCCceee-eccceEEEEEec-CChHHHHHHHHHCCceEeecC-----------CCCEEEEecCCCCcHHHHH
Q 012368 381 TLKQKLARNPHVKDV-RGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQELD 447 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~-~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------~~~~lRi~~~~~~t~e~i~ 447 (465)
.+.+.+.+++.+... ...+.++.+.++ ....++.+.|.++||.+.++. ..+++|++++..+|++|++
T Consensus 307 ~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid 386 (401)
T PRK10874 307 LAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVD 386 (401)
T ss_pred HHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHH
Confidence 444444455433322 233445666663 356788889999999998643 1368999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 012368 448 QAVEILCKTLPVL 460 (465)
Q Consensus 448 ~~l~~l~~~l~~~ 460 (465)
++++.|+++++.+
T Consensus 387 ~ll~al~~~~~~~ 399 (401)
T PRK10874 387 ALVNAVDRALELL 399 (401)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=199.45 Aligned_cols=315 Identities=17% Similarity=0.098 Sum_probs=197.0
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
+..++||..|.. +++ .++.+++++.+.+..... |+. ....++++.++++++ +++|++|+|+++|+..+++
T Consensus 21 ~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~----Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~ 93 (349)
T PRK07908 21 GPGLLDFAVNVR--HDT-PPEWLRERLAARLGDLAA----YPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR 93 (349)
T ss_pred CCCeEEecCCCC--CCC-CCHHHHHHHHHHhhHhhc----CCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh
Confidence 567999988754 444 678899999988765322 222 235678888888776 7899999999999998777
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
+. + +++++..|+|.++...+...+. .... .+...+.. -|++++ +++...+++++
T Consensus 94 -l~------------~-~~viv~~P~y~~~~~~~~~~G~-~i~~---v~~~~~~~----~d~~~l----~~~~~~i~l~n 147 (349)
T PRK07908 94 -LR------------P-RRAAVVHPSFTEPEAALRAAGI-PVHR---VVLDPPFR----LDPAAV----PDDADLVVIGN 147 (349)
T ss_pred -cC------------C-CeEEEeCCCChHHHHHHHHcCC-EEEe---eccCcccC----cChhHh----ccCCCEEEEcC
Confidence 22 3 4677889999776643332221 1111 11111111 145543 22233455567
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC--cccEEEecccCC-CccceeeEEeCH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLAKPLA-GGLPIGAALVTE 330 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~--~pdi~t~sK~lg-~G~~iG~v~~~~ 330 (465)
|.|++|. + .+.+ +|.++|+ ++.++|+||+|..| ..+........+. ..-+.+|||.++ .|+|+||+++++
T Consensus 148 p~NPTG~-~-~~~~---~l~~l~~-~~~~iIvDe~y~~~-~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~ 220 (349)
T PRK07908 148 PTNPTSV-L-HPAE---QLLALRR-PGRILVVDEAFADA-VPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAP 220 (349)
T ss_pred CCCCCCC-C-cCHH---HHHHHHh-cCCEEEEECcchhh-ccCCccccccccCCCEEEEeecccccCCccceeeeeecCH
Confidence 7766653 3 3544 5667775 47889999999876 2333211111111 122337899998 799999999999
Q ss_pred HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCCh
Q 012368 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSA 410 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~ 410 (465)
++++.+.... ..++.+++.++++.+.++. ....+++++++.....++.+.+.+.+++.....+..|.++|+.++. .
T Consensus 221 ~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~~~~~~-~ 296 (349)
T PRK07908 221 DVLARLTRGR--AHWPVGTLQLEAIAACCAP-RAVAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVPD-A 296 (349)
T ss_pred HHHHHHHhcC--CCCCccHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEEEECCc-H
Confidence 9998886432 2355666766665555541 1122334444444444444444444443222223568888888743 5
Q ss_pred HHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 411 TPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 411 ~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
..+.+.|.++||.+.++.. .+++|+++ .+++++++++++|++++.
T Consensus 297 ~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 297 ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK 346 (349)
T ss_pred HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence 6788888899999988631 36899986 478899999999988764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=193.90 Aligned_cols=334 Identities=18% Similarity=0.191 Sum_probs=220.6
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhc-ccccC--CCCC---HHHHHHHHHHHhhcC--CCeEEecCCHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN--MYYS---IPQIELAKRLVACSF--ADRVFFSNTGTEANEA 170 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~-~~~~~--~~~~---~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~ 170 (465)
.|+|.....+ -+|+|++++...+... ++-++ .+.. ...++.++.+++..+ +++|+||+||||++.+
T Consensus 3 iYlD~~ATTp------~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNl 76 (386)
T COG1104 3 IYLDNAATTP------VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNL 76 (386)
T ss_pred ccccccccCC------CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHH
Confidence 5899887655 5699999999988764 21111 1111 124556677788887 7799999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
|++.+....... ..+.+|| .+..-|......+..-....+...+.+...+... |+++|+++|++ ++.+|
T Consensus 77 aI~g~~~a~~~~-----~~~~HII-ts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v----~~e~L~~al~~-~T~LV 145 (386)
T COG1104 77 AIKGAALAYRNA-----QKGKHII-TSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLV----DLEQLEEALRP-DTILV 145 (386)
T ss_pred HHHhhHHhhhcc-----cCCCeEE-EcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeE----cHHHHHHhcCC-CceEE
Confidence 999754322110 0244444 5556665554443321111222222222222222 89999999986 58899
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecc-cCCCccceeeEEeC
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK-PLAGGLPIGAALVT 329 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK-~lg~G~~iG~v~~~ 329 (465)
.+..+|++.|++.| +++|.++|+++++++++|-||. +|+. ..+......|+++||- .++|.-.+|+++.+
T Consensus 146 Sim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gki----pi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~ 216 (386)
T COG1104 146 SIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKI----PIDLEELGVDLLSFSAHKFGGPKGIGALYVR 216 (386)
T ss_pred EEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCce----eccccccCcceEEeehhhccCCCceEEEEEC
Confidence 99999999999998 9999999999999999999997 6554 3333444579999983 35554678999887
Q ss_pred HHHHhhccCCC---------CcCCCCChHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHcCCCcee-eec
Q 012368 330 EKVASAINYGD---------HGSTFAGSPLVCNAAIAVLDKIS--NPAFLASVSKKGHYFKETLKQKLARNPHVKD-VRG 397 (465)
Q Consensus 330 ~~i~~~~~~~~---------~~~t~~~~~~~~~aa~a~L~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~ 397 (465)
+.+. +.+.. ..+|- |..+.++..+++++.. .+...+++..++++|.+.|.+.....-.... ...
T Consensus 217 ~~~~--~~p~i~GGgQE~g~RsGTe--nv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~r 292 (386)
T COG1104 217 PGVR--LEPLIHGGGQERGLRSGTE--NVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPR 292 (386)
T ss_pred CCCc--cCceeccCcCCCCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccC
Confidence 6543 22222 22333 4555555556666542 2455667777777777777654211101111 233
Q ss_pred cceEEEEEe-cCChHHHHHHHHHCCceEeecC-----------------C-----CCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 398 LGLIIGIEF-DVSATPVVDACRDSGLLVLTAG-----------------K-----GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 398 ~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~~-----------------~-----~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
....+.+.| ..+.+.+...|-.+||.++.+. . ...+||+++...|++|++.+++.+.
T Consensus 293 lP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~ 372 (386)
T COG1104 293 LPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALK 372 (386)
T ss_pred CCCeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHH
Confidence 455566666 4567778888888899987541 0 2569999999999999999999999
Q ss_pred HHHHHhhh
Q 012368 455 KTLPVLDS 462 (465)
Q Consensus 455 ~~l~~~~~ 462 (465)
+++++++.
T Consensus 373 ~~i~~lr~ 380 (386)
T COG1104 373 EIIKRLRE 380 (386)
T ss_pred HHHHHHhh
Confidence 99998865
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=202.40 Aligned_cols=317 Identities=17% Similarity=0.149 Sum_probs=202.3
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHh
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t 179 (465)
+|||.++.. -| .+|.+++|+.+..... ..+++.+...+|++.|+++++.+.+++++||++++.+++.+..
T Consensus 1 ~~~~~~~~~---~~-p~~~~~~a~~~~~~~~---~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~--- 70 (333)
T PRK10534 1 MIDLRSDTV---TR-PSRAMLEAMMAAPVGD---DVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHC--- 70 (333)
T ss_pred CcccccccC---CC-CCHHHHHHHHhccCCC---cccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhc---
Confidence 478888755 24 7899999987754331 1223677789999999999998777899999999888887543
Q ss_pred hhcCCCCCCCCceEEEEcCCccc-Cccc-cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-----CeEEEEE
Q 012368 180 RHSNPDSKEPATEFVSFTNSFHG-RTMG-ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KTAAVFV 252 (465)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~yhg-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~a~vi~ 252 (465)
.++++|++..|+|.. +... ....++..... .+...+. ..|+++|++++.++ ++++|++
T Consensus 71 --------~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 71 --------ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQP---IDAAADG----TLPLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred --------CCCCeeEEechhhhhHhcCCchHHhcCceEEe---ecCCCCC----CCCHHHHHHhhcccCcCcccceEEEE
Confidence 157888887776632 2111 11111100000 0111111 12789999988642 3555555
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC---CccccccccCCcc-cEEEecccCCCcccee-eEE
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT---GYLWAHEHYGIFP-DIMTLAKPLAGGLPIG-AAL 327 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~---g~~~~~~~~~~~p-di~t~sK~lg~G~~iG-~v~ 327 (465)
+ ++++ |.+ .+.+.+++|.++|++|+++||+||+|. |+.. +... .......+ -+++|||+++. ++| +++
T Consensus 136 ~-np~~-G~v-~~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~-~~~~~~~~~~~~s~SK~~~~--~~G~~~~ 208 (333)
T PRK10534 136 E-NTHN-GKV-LPREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCEL-KEITQYCDSFTICLSKGLGT--PVGSLLV 208 (333)
T ss_pred e-cCCC-Cee-cCHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCH-HHHHhcCCEEEEEeEcCCCC--cccceEE
Confidence 5 2333 554 478889999999999999999999976 4211 2111 00011111 24589998764 578 678
Q ss_pred eCHHHHhhccCCCC--cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEE
Q 012368 328 VTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405 (465)
Q Consensus 328 ~~~~i~~~~~~~~~--~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~ 405 (465)
+++++++.+..... +..++.+.++++++.++|+.. .+.+++..+..+++.+.|.+ .+. ...++.++|+++.
T Consensus 209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~----~g~-~~~~~~~nfv~~~ 281 (333)
T PRK10534 209 GNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLRE----AGA-DVMRQDTNMLFVR 281 (333)
T ss_pred cCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHh----CCC-ccCCCCceEEEEE
Confidence 89999888764322 122334456677777777632 23334444444555555554 332 2334468888888
Q ss_pred ec-CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 406 FD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 406 ~~-~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
++ ....++.+.|.++||++.++ ..+|+...+.+|++++++++++|++++.
T Consensus 282 ~~~~~~~~~~~~l~~~gi~v~~~---~~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 282 VGEEQAAALGEYMRERNVLINAS---PIVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred CCchhHHHHHHHHHHcCeeecCC---ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 74 24567888899999999875 3478877767899999999999987663
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=204.05 Aligned_cols=295 Identities=14% Similarity=0.140 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhhcC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC
Q 012368 141 PQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (465)
Q Consensus 141 ~~~~la~~l~~~~~------~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (465)
.+..+++++.+..+ .++|++|+|+++|+..+++++.. +++.|++.+|+|+.+........+..
T Consensus 49 lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~-----------~gd~Vlv~~P~y~~~~~~~~~~~g~~ 117 (388)
T PRK08637 49 LRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVD-----------QGDTVLLPDHNWGNYKLTFNTRRGAE 117 (388)
T ss_pred HHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcC-----------CCCEEEEcCCCCccHHHHHHHhcCCE
Confidence 35555555544332 25789999999999998886652 68999999999988875432222211
Q ss_pred CcCCCCCCCC-CCceEeeCCCHHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-----hCCEEE
Q 012368 215 HYRSPFEPVM-PGVNFVEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-----AGALLV 284 (465)
Q Consensus 215 ~~~~~~~~~~-~~~~~~~~~d~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI 284 (465)
... .++. .+.. -|++++++.++ +.+...++++|.||+| ..++++.+++|.++|++ |+++||
T Consensus 118 vv~---v~~~~~~~~----~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG--~~~s~~~~~~l~~~~~~~~~~~~~~~iI 188 (388)
T PRK08637 118 IVT---YPIFDEDGG----FDTDALKEALQAAYNKGKVIVILNFPNNPTG--YTPTEKEATAIVEAIKELADAGTKVVAV 188 (388)
T ss_pred EEE---ecccCCCCc----CCHHHHHHHHHhhccCCCEEEEEeCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 111 1111 1111 17899988875 2223344445666665 55699999999999886 999999
Q ss_pred EeccccCCCCCCccc-c-c-cccCCccc---EE--EecccCC-CccceeeEEeC------HHHHhhccCC----CCcCCC
Q 012368 285 FDEVQCGLGRTGYLW-A-H-EHYGIFPD---IM--TLAKPLA-GGLPIGAALVT------EKVASAINYG----DHGSTF 345 (465)
Q Consensus 285 ~DEv~~g~gr~g~~~-~-~-~~~~~~pd---i~--t~sK~lg-~G~~iG~v~~~------~~i~~~~~~~----~~~~t~ 345 (465)
+||+|.+|-+.+... . . ...+...+ +. ++||.++ .|+|+||++.+ +++++.+... .....+
T Consensus 189 ~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (388)
T PRK08637 189 VDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNIS 268 (388)
T ss_pred ecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccC
Confidence 999999885444311 1 1 11122222 22 6899877 59999999854 6777666421 112335
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH---HHHHHHcCC---Cceeee-ccceEEEEEec-CChHHHHHHH
Q 012368 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET---LKQKLARNP---HVKDVR-GLGLIIGIEFD-VSATPVVDAC 417 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~---l~~~~~~~~---~~~~~~-~~g~~~~i~~~-~~~~~~~~~l 417 (465)
+.|.+++.++.++|+ ++.+.+++++....++++ +.+.+..++ .+...+ ..|.++|+.++ .+..++++.|
T Consensus 269 ~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l 345 (388)
T PRK08637 269 NGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHL 345 (388)
T ss_pred CCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCChHHHHHHHHHH
Confidence 678899999988885 344444444443333332 333343331 222233 44677888874 2457788988
Q ss_pred H-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 418 R-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 418 ~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+ ++||.+.+.+. +++||+++. .+++++++++++|.++++.+
T Consensus 346 ~~~~gv~~~~~~~-~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 346 LEKYGIGTIALNE-TDLRIAFSC-VEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred hhhcceEEEeccC-CceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence 6 57998876543 689998775 67899999999999998765
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-23 Score=200.96 Aligned_cols=316 Identities=17% Similarity=0.150 Sum_probs=200.7
Q ss_pred ecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhh
Q 012368 102 DLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRH 181 (465)
Q Consensus 102 D~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~ 181 (465)
||++.. ++| .+|.+++++.+.+... ..+++.+...+++++++++++.++++++++|++|+..+++.+..
T Consensus 1 ~~~~~~---~~~-~~~~v~~a~~~~~~~~---~~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~---- 69 (338)
T cd06502 1 DFRSDT---VTG-PTPEMLEAMAAANVGD---DVYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQ---- 69 (338)
T ss_pred Cccccc---CCC-CCHHHHHHHHhcccCC---cccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcC----
Confidence 566654 477 8899999998865321 12345666889999999999877899999999999998886641
Q ss_pred cCCCCCCCCceEEEEcCCcccCcccc--ccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC------CCeEEEEEc
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGA--LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP------GKTAAVFVE 253 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~------~~~a~vi~e 253 (465)
+++.|++.+++|....... ....+..... .+... ...|++++++++++ .++++|+++
T Consensus 70 -------~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~-----~~~d~~~l~~~i~~~~~~~~~~~~~v~l~ 134 (338)
T cd06502 70 -------PGGSVICHETAHIYTDEAGAPEFLSGVKLLP---VPGEN-----GKLTPEDLEAAIRPRDDIHFPPPSLVSLE 134 (338)
T ss_pred -------CCCeEEEecCcceeeecCCcHHHHcCceEEe---ecCCC-----CcCCHHHHHHHhhccCCCcCCcceEEEEE
Confidence 5788888777764332111 1111111111 11111 01388999999863 145555555
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC--CCCccccccccCCcccEE--EecccCCCccceee-EEe
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG--RTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGA-ALV 328 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g--r~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~-v~~ 328 (465)
..++.||.. +.+.+++|.++|++||+++|+||+|..+. ..|. ........+|++ +++|+++. +.|+ +++
T Consensus 135 ~p~n~g~~~--~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~--~~g~~~~~ 208 (338)
T cd06502 135 NTTEGGTVY--PLDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA--PVGAVVVG 208 (338)
T ss_pred eecCCcccc--CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC--ccceEEEC
Confidence 443445433 77889999999999999999999874221 1121 111112234544 67899874 2344 457
Q ss_pred CHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe
Q 012368 329 TEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406 (465)
Q Consensus 329 ~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~ 406 (465)
++++++.+... .++++++.+++.++++.++|+.-...+..+++.++.+++.+.|+++ +. ....+.+.++.+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~~~v~~ 283 (338)
T cd06502 209 NRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL----GG-LESEVQTNIVLLDP 283 (338)
T ss_pred CHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc----CC-CcccccCCeEEEec
Confidence 88888877542 2234566677788888877763211234455666666666666543 32 12234566666665
Q ss_pred cCCh---HHHHHHHH---HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 407 DVSA---TPVVDACR---DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 407 ~~~~---~~~~~~l~---~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+... ..+.+.+. ++|+++.+.+. +++||++++.++++|++++++++++
T Consensus 284 ~~~~~~~~~l~~~l~~~~~~gi~~~~~~~-~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 284 VEANAVFVELSKEAIERRGEGVLFYAWGE-GGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred CCccHHHHHHHHHHHHhhhCCEEEEecCC-CeEEEEeecCCCHHHHHHHHHHHhc
Confidence 3211 23333443 68999988755 8899999999999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-22 Score=197.47 Aligned_cols=327 Identities=17% Similarity=0.163 Sum_probs=202.1
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC------CHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY------SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~a 171 (465)
|+|..+. +..++.|.+++.+.+........... .....++++++++.++ .++|+|++||++++..+
T Consensus 2 yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~a 75 (379)
T TIGR03402 2 YLDNNAT------TRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTA 75 (379)
T ss_pred cCCCcCC------CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHH
Confidence 6776654 33678999999988764211111111 1225677788898887 66899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
++.+..... +++.|++....|++.......+ .+... ...+...+.. .|++++++++++ ++++
T Consensus 76 l~~~~~~~~--------~~~~vv~~~~~~~s~~~~~~~~~~~G~~v---~~v~~~~~g~----~~~~~l~~~i~~-~~~l 139 (379)
T TIGR03402 76 IKSALAAQP--------EKRHIITTAVEHPAVLSLCQHLEKQGYKV---TYLPVDEEGR----LDLEELRAAITD-DTAL 139 (379)
T ss_pred HHHHHHhcC--------CCCeEEEcccccHHHHHHHHHHHHcCCEE---EEEccCCCCc----CCHHHHHHhcCC-CcEE
Confidence 987653211 3566776666665543221111 11110 0111111111 278999999975 4667
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEE
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAAL 327 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~ 327 (465)
+++...++.+|.+.+ +++|.++|++||+++|+|++|+ +|.. ..+.....+|++++| | +.|...+|+++
T Consensus 140 v~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~----~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~ 209 (379)
T TIGR03402 140 VSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI----PIDLKEMNIDMLSLSGHK-LHGPKGVGALY 209 (379)
T ss_pred EEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc----ccCcccCCCCEEEEcHHH-cCCCCceEEEE
Confidence 777666667777766 7899999999999999999997 4322 223334567999988 9 55545688888
Q ss_pred eCHHHHhhccCCCC-------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CCCceeee---
Q 012368 328 VTEKVASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NPHVKDVR--- 396 (465)
Q Consensus 328 ~~~~i~~~~~~~~~-------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~--- 396 (465)
.+++.. +.+... ......|..+..+..++++.+.+ ..+.+.+..+.+++.+.+.+.. .+.+....
T Consensus 210 v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 285 (379)
T TIGR03402 210 IRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGLLARIPDARLNGDPT 285 (379)
T ss_pred ECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCc
Confidence 876542 222111 01123455666666677776532 2333334444444444443332 33221111
Q ss_pred -ccceEEEEEe-cCChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHHHHHHHH
Q 012368 397 -GLGLIIGIEF-DVSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVEI 452 (465)
Q Consensus 397 -~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i~~~l~~ 452 (465)
..+..+.+.+ ..+..++...|.++||.+.++.. .+.+|++++..+|++||+++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~ 365 (379)
T TIGR03402 286 KRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEV 365 (379)
T ss_pred cCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHH
Confidence 1122333333 34567888888889999875420 25799999999999999999999
Q ss_pred HHHHHHHhhh
Q 012368 453 LCKTLPVLDS 462 (465)
Q Consensus 453 l~~~l~~~~~ 462 (465)
|+++++++++
T Consensus 366 l~~~~~~~~~ 375 (379)
T TIGR03402 366 LPPIIARLRA 375 (379)
T ss_pred HHHHHHHHHh
Confidence 9999887653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-22 Score=196.80 Aligned_cols=313 Identities=18% Similarity=0.179 Sum_probs=201.3
Q ss_pred CCCCCHHHHHHHHHHHhhcccccCCCC-------CHHHHHHHHHHHhhcCC---CeEEecCCHHHHHHHHHHHHHHHhhh
Q 012368 112 LGHGDADWIKAVVDQANVLTHVSNMYY-------SIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKFARKFQRH 181 (465)
Q Consensus 112 lGh~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~la~~l~~~~~~---~~v~~~~sG~eA~~~al~~a~~~t~~ 181 (465)
.|..+|.+.+++.+.++.....+..+. .....++.+.+++.++. +.+++++|+++|+..+++.+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~- 86 (373)
T cd06453 8 TSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANK- 86 (373)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCC-
Confidence 455788999999988765322111111 12245677888888873 4899999999999999987653100
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccC
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQ 256 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~ 256 (465)
++++|++.++.|.+.......... .....+..++. -|++++++.+.+ ++++|++..++
T Consensus 87 -------~g~~vl~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~ 149 (373)
T cd06453 87 -------PGDEIVTSVMEHHSNIVPWQQLAE---------RTGAKLKVVPVDDDGQLDLEALEKLLTE-RTKLVAVTHVS 149 (373)
T ss_pred -------CCCEEEECcchhHHHHHHHHHHHh---------hcCcEEEEeecCCCCCcCHHHHHHHhcC-CceEEEEeCcc
Confidence 477899998887654221111000 00011122221 278999999975 56677666555
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHh
Q 012368 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVAS 334 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~ 334 (465)
+..|.+.+ +++|.++|++||++||+|++++ +|.. ........+|++++| |++++ .++|++++++++++
T Consensus 150 ~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~ 219 (373)
T cd06453 150 NVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHM----PVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLE 219 (373)
T ss_pred cccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCce----eeeccccCCCEEEeccccccCC-CCcEEEEEchHHhh
Confidence 55676655 8899999999999999999986 3222 112223457888888 99987 67899999999888
Q ss_pred hccCCCCcC------------------CC---CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce
Q 012368 335 AINYGDHGS------------------TF---AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK 393 (465)
Q Consensus 335 ~~~~~~~~~------------------t~---~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 393 (465)
.+.+...+. .| +.+..++.+..++++.+.+.++ +++.+....+.+.+.+.+.+.+.+.
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~-~~~~~~~~~~~~~l~~~l~~~~~~~ 298 (373)
T cd06453 220 EMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGM-EAIAAHEHELTAYALERLSEIPGVR 298 (373)
T ss_pred cCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 776422110 01 2344455566666776654433 3333444444445544444454322
Q ss_pred ee---eccceEEEEEec-CChHHHHHHHHHCCceEeecC-----------CCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 394 DV---RGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 394 ~~---~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.+ ...+.++.+.+. .+..++.+.|.++||.+.++. .++.+|++++..+|++|+|++++.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 299 VYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 22 234667777763 456789999999999986532 1368999999999999999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-21 Score=195.47 Aligned_cols=324 Identities=15% Similarity=0.070 Sum_probs=207.7
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC------CHHHHHHHHHHHhhcC---CCeEEecCCHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY------SIPQIELAKRLVACSF---ADRVFFSNTGTE 166 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~------~~~~~~la~~l~~~~~---~~~v~~~~sG~e 166 (465)
+..|+|..+. |..++.|++++.+.+....... .... .....++++.+++.++ .++|+||+|+++
T Consensus 23 ~~iYld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 96 (406)
T PRK09295 23 PLAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE 96 (406)
T ss_pred ceEEEeCccc------ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence 4578997764 3367889999998876422111 1111 1225678888888886 468999999999
Q ss_pred HHHHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHh
Q 012368 167 ANEAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRK 240 (465)
Q Consensus 167 A~~~al~~a~~-~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~ 240 (465)
++..+++.... .. .++++||+.++.||+........... ....+..++. .|+++|++
T Consensus 97 ~l~~~~~~~~~~~~--------~~gd~vl~~~~~~~s~~~~~~~~~~~---------~g~~v~~v~~~~~~~~d~~~l~~ 159 (406)
T PRK09295 97 GINLVANSWGNSNV--------RAGDNIIISEMEHHANIVPWQMLCAR---------VGAELRVIPLNPDGTLQLETLPA 159 (406)
T ss_pred HHHHHHHHhhhhcC--------CCcCEEEECcchhhHHHHHHHHHHHH---------cCcEEEEEecCCCCCCCHHHHHH
Confidence 99988875421 11 15789999998887653222111000 0011112221 27899999
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCC
Q 012368 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLA 318 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg 318 (465)
++++ ++++|++..+++..|.+.+ +++|.++|+++|+++|+|++|+ +|.. ..... ...+|++++| |.+|
T Consensus 160 ~i~~-~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~--~~~~D~~~~s~~K~~g 229 (406)
T PRK09295 160 LFDE-RTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHH--PVDVQ--ALDCDFYVFSGHKLYG 229 (406)
T ss_pred hcCC-CcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCcc--ccCch--hcCCCEEEeehhhccC
Confidence 9975 4566666666666777766 8999999999999999999996 4332 11222 3346777665 9655
Q ss_pred CccceeeEEeCHHHHhhccCCCCc----------------------CCCCChHHHHHHHHHHHHHhcCc---hHHHHHHH
Q 012368 319 GGLPIGAALVTEKVASAINYGDHG----------------------STFAGSPLVCNAAIAVLDKISNP---AFLASVSK 373 (465)
Q Consensus 319 ~G~~iG~v~~~~~i~~~~~~~~~~----------------------~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~ 373 (465)
. ..+|++++++++++.+.+...+ .+-+.|..++.+..++++.+.+. ...++.++
T Consensus 230 p-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~ 308 (406)
T PRK09295 230 P-TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQN 308 (406)
T ss_pred C-CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3 3479999999887765432110 01135667778888888876542 33444444
Q ss_pred HHHHHHHHHHHHHHcCCCceeee--ccceEEEEEec-CChHHHHHHHHHCCceEeecC-----------CCCEEEEecCC
Q 012368 374 KGHYFKETLKQKLARNPHVKDVR--GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPL 439 (465)
Q Consensus 374 ~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------~~~~lRi~~~~ 439 (465)
+.+++++.| .+.+.+.... ..+.++.+.++ ....++.+.|.++||.+..+. .++.+|++++.
T Consensus 309 l~~~l~~~l----~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ 384 (406)
T PRK09295 309 LMHYALSQL----ESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAM 384 (406)
T ss_pred HHHHHHHHH----hcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccC
Confidence 555554444 3444222111 12445666653 456778888889999987542 12579999999
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 012368 440 IISEQELDQAVEILCKTLP 458 (465)
Q Consensus 440 ~~t~e~i~~~l~~l~~~l~ 458 (465)
..|++|+|.+++.|+++..
T Consensus 385 ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 385 YNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988653
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-21 Score=193.67 Aligned_cols=324 Identities=16% Similarity=0.128 Sum_probs=201.1
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCC-----HHHHHHHHHHHhhcC--CCeEEecCCHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYS-----IPQIELAKRLVACSF--ADRVFFSNTGTEANE 169 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~-----~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~ 169 (465)
..|+|..+. |..++.+++++.+.+......+ ..+.. +..+++++.++++++ .+.|++++|+++++.
T Consensus 18 ~~yl~~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~ 91 (397)
T TIGR01976 18 RVFFDNPAG------TQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF 91 (397)
T ss_pred eEEecCCcc------CCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence 478886543 4477899999999886532111 11211 235788899999887 457999999999988
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc---cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (465)
.+++......+ ++++|++.++.|++...... ...+..... .+...+.. ..|++++++++++ +
T Consensus 92 ~~~~~~~~~~~--------~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~---~~~~~~~~---~~~~~~l~~~i~~-~ 156 (397)
T TIGR01976 92 LLSRAISRRWG--------PGDEVIVTRLDHEANISPWLQAAERAGAKVKW---ARVDEATG---ELHPDDLASLLSP-R 156 (397)
T ss_pred HHHHHHHhcCC--------CCCEEEEcCCchHhHHHHHHHHHHhcCCEEEE---EeccccCC---CcCHHHHHHhcCC-C
Confidence 77775532221 57899999988766532211 111111100 11111000 1278999999975 4
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCcccee
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIG 324 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG 324 (465)
+.+|+++.+++..|.+.+ +++|.++|++||+++|+||++. .|. + ..... ...+|++ +++|++ |.++|
T Consensus 157 ~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~-~~~~~--~~~~d~~~~s~~K~~--g~~~G 225 (397)
T TIGR01976 157 TRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APH-G-LIDVQ--ATGADFLTCSAYKFF--GPHMG 225 (397)
T ss_pred ceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c-CCCHH--HcCCCEEEEechhhc--CCceE
Confidence 566666655566666665 9999999999999999999985 321 1 11122 2345766 566987 45799
Q ss_pred eEEeCHHHHhhccCCCCcCCC----------CChHHHHHHHHHHHHHhcCch-------------HHHHHHHHHHHHHHH
Q 012368 325 AALVTEKVASAINYGDHGSTF----------AGSPLVCNAAIAVLDKISNPA-------------FLASVSKKGHYFKET 381 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~----------~~~~~~~~aa~a~L~~~~~~~-------------~~~~~~~~~~~l~~~ 381 (465)
++++++++++.+.+......+ +.+....++..++++.+.+.+ ..+.+++....+.+.
T Consensus 226 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (397)
T TIGR01976 226 ILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEY 305 (397)
T ss_pred EEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 999999988777643211111 123344455555555542211 134444444555555
Q ss_pred HHHHHHcCCCceeee-----ccceEEEEEec-CChHHHHHHHHHCCceEeecC--------------CCCEEEEecCCCC
Q 012368 382 LKQKLARNPHVKDVR-----GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG--------------KGNVVRLVPPLII 441 (465)
Q Consensus 382 l~~~~~~~~~~~~~~-----~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~--------------~~~~lRi~~~~~~ 441 (465)
+.+.+.+.+.+.... ..+.++.+.++ ....++.++|.++||.+..+. .++++|++++..+
T Consensus 306 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 385 (397)
T TIGR01976 306 LLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYN 385 (397)
T ss_pred HHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccC
Confidence 555555554222221 24556666653 456789999999999998651 1358999999999
Q ss_pred cHHHHHHHHHHH
Q 012368 442 SEQELDQAVEIL 453 (465)
Q Consensus 442 t~e~i~~~l~~l 453 (465)
|++|++++++.|
T Consensus 386 t~~di~~l~~~l 397 (397)
T TIGR01976 386 TAEEVDRLLEAL 397 (397)
T ss_pred CHHHHHHHHHhC
Confidence 999999998864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=193.23 Aligned_cols=326 Identities=12% Similarity=0.072 Sum_probs=205.6
Q ss_pred cccccCCCCCHHHHHHHHHHHhhcccc------cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhh
Q 012368 107 IAVNALGHGDADWIKAVVDQANVLTHV------SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 107 ~~~~~lGh~~p~v~~a~~~~~~~~~~~------~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.+..-+|..++.+++|+.+........ ......+...++++.++++++.+.+++++|+++|+..+++.+..
T Consensus 24 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~--- 100 (387)
T PRK09331 24 DPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCK--- 100 (387)
T ss_pred ChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcC---
Confidence 344567888899999999987542211 01112345789999999999988899999999999999987641
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC--CCCceEeeCCCHHHHHhhcCC------CCeEEEEE
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV--MPGVNFVEYGNIEATRKLIQP------GKTAAVFV 252 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l~~------~~~a~vi~ 252 (465)
++++|++..+++.+.... +...+..... .+. ..+.. .|+++++++++. .++++|++
T Consensus 101 --------~gd~Vlv~~~~h~s~~~~-~~~~G~~~~~---v~~~~~~~~~----~d~~~l~~~l~~~~~~~~~~~~lV~l 164 (387)
T PRK09331 101 --------KGDYVVLDGLAHYTSYVA-AERAGLNVRE---VPKTGYPEYK----ITPEAYAEKIEEVKEETGKPPALALL 164 (387)
T ss_pred --------CCCEEEECCCchHHHHHH-HHHcCCEEEE---EeCccCcCCC----cCHHHHHHHHHHhhhccCCCCEEEEE
Confidence 578888887766554432 2222211100 011 01111 378999998863 25778888
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHH
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV 332 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i 332 (465)
+..+++.|.+.+ +++|.++|++||+++|+|++|+ +|..+ +....+++...+.+++|+++++.++|++++++++
T Consensus 165 ~~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~--~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~ 237 (387)
T PRK09331 165 THVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP--VDGKKLGADFIVGSGHKSMAASAPSGVLATTEEY 237 (387)
T ss_pred ECCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC--CCHHHcCCCEEEeeCcccccCCCCEEEEEECHHH
Confidence 877777777765 9999999999999999999997 33221 1222344434445678999987899999999998
Q ss_pred HhhccCCCCcC------CCC--ChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceee---eccce
Q 012368 333 ASAINYGDHGS------TFA--GSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDV---RGLGL 400 (465)
Q Consensus 333 ~~~~~~~~~~~------t~~--~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~g~ 400 (465)
++.+....... .++ ..+....+++++++.+.+ .+.+++..++.+++++.|.+ .+.+... .+...
T Consensus 238 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~----l~g~~~~~~~~~~~~ 313 (387)
T PRK09331 238 ADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEK----IEGFKQLGEKPRNHD 313 (387)
T ss_pred HhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEeccCcCcCC
Confidence 88764321000 011 222334444555554322 22334444555555555543 4322222 22334
Q ss_pred EEEEEec----------CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 401 IIGIEFD----------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 401 ~~~i~~~----------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
++.++.. ....++.+.|.++||...+.+.+..+|+.. ..+|++++++++++|+++++++.-+
T Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~-~g~t~~di~~l~~aL~~i~~~~~~~ 385 (387)
T PRK09331 314 LMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLST-YGLTWEQVEYVADAFKEIAEKYGLE 385 (387)
T ss_pred eEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccCCceEEEEEe-ccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4444422 123468899999999855544445667664 4589999999999999998876533
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-21 Score=188.54 Aligned_cols=327 Identities=19% Similarity=0.203 Sum_probs=223.9
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCC-------CCHHHHHHHHHHHhhcC---CCeEEecCCHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-------YSIPQIELAKRLVACSF---ADRVFFSNTGTEA 167 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA 167 (465)
--|+|...+ +..|..|.+++.+............ .+...++.++.++++.+ .+.|+||.+.|+|
T Consensus 23 ~vylD~aa~------~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 23 LVYLDNAAT------SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred eEEecCccc------ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 357886654 3467889999998775432111111 12236778888888887 3789999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhc
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLI 242 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l 242 (465)
+..+........ .++|.||+.+-.+|........+..... ..+..+|.+ |++++++.+
T Consensus 97 ln~va~~l~~~~--------~~gdeIv~s~~EH~sn~~pw~~~~~~~G---------a~v~~i~~~~~g~~~~~~~~~~i 159 (405)
T COG0520 97 LNLVARGLGRSL--------KPGDEIVVSDLEHHSNIVPWQELAKRTG---------AKVRVIPLDDDGLLDLDALEKLI 159 (405)
T ss_pred HHHHHHHhhhhh--------cCCCEEEEccCcchhhHHHHHHHHHhcC---------cEEEEEecCCCCCcCHHHHHHhc
Confidence 998887653211 1579999999999887765544432111 122333321 689999988
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCc
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGG 320 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G 320 (465)
++ ++++|.+..+.+..|++.| +++|.++|+++|+++++|-+|+ ++.. ..+...+..|...|| |++.|.
T Consensus 160 ~~-~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h~----~idv~~l~~Df~afsgHKwl~gP 229 (405)
T COG0520 160 TP-KTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AGHL----PIDVQELGCDFLAFSGHKWLLGP 229 (405)
T ss_pred CC-CceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cCcc----CCCchhcCCCEEEEcccccccCC
Confidence 64 6889999999999999887 9999999999999999999986 3211 233344567999888 988877
Q ss_pred cceeeEEeCHHHHhhccCCCC------------cCCC----------CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012368 321 LPIGAALVTEKVASAINYGDH------------GSTF----------AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~------------~~t~----------~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
-.+|.+++++++++.+.|... ..++ ..|.....+..++++.+.+-. .+.+.+....+
T Consensus 230 ~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig-~~~i~~~e~~L 308 (405)
T COG0520 230 TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIG-MEAIEAHEREL 308 (405)
T ss_pred CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHh-HHHHHHHHHHH
Confidence 789999999999998865311 1111 123344444456666554322 34444444445
Q ss_pred HHHHHHHHHcCCCceee--e--ccceEEEEEe-cCChHHHHHHHHHCCceEeecCC-----------CCEEEEecCCCCc
Q 012368 379 KETLKQKLARNPHVKDV--R--GLGLIIGIEF-DVSATPVVDACRDSGLLVLTAGK-----------GNVVRLVPPLIIS 442 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~--~--~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~~~-----------~~~lRi~~~~~~t 442 (465)
.+.+.+.+.+.|.+... . ..+.++.+.+ .....++...|.++||.++.+.. ...+|+++++..|
T Consensus 309 ~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt 388 (405)
T COG0520 309 TEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNT 388 (405)
T ss_pred HHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCC
Confidence 55555555555533221 1 3566777777 35688999999999988876532 1239999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012368 443 EQELDQAVEILCKTLP 458 (465)
Q Consensus 443 ~e~i~~~l~~l~~~l~ 458 (465)
++|||++++.|+++.+
T Consensus 389 ~edid~l~~aL~~~~~ 404 (405)
T COG0520 389 EEDVDRLLEALKKALA 404 (405)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=193.87 Aligned_cols=310 Identities=16% Similarity=0.081 Sum_probs=198.7
Q ss_pred CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHhhcCC---CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~---~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~ 189 (465)
.++.|.+|+.+.+.. ..++ ....+++++.+++.++. +.+++++||++|+..+++... .+
T Consensus 10 ~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~-----------~~ 73 (356)
T cd06451 10 VPPRVLKAMNRPMLG-----HRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL-----------EP 73 (356)
T ss_pred CCHHHHHHhCCCccC-----CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC-----------CC
Confidence 557777777654321 1222 23367888999999873 357899999999999888654 15
Q ss_pred CceEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHH
Q 012368 190 ATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEF 268 (465)
Q Consensus 190 ~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~ 268 (465)
++.|++.+++|++... ......+.... ..+..+.. ..|++++++.++++++++|++...++..|.+.+
T Consensus 74 g~~vl~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---- 142 (356)
T cd06451 74 GDKVLVGVNGVFGDRWADMAERYGADVD---VVEKPWGE----AVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---- 142 (356)
T ss_pred CCEEEEecCCchhHHHHHHHHHhCCCeE---EeecCCCC----CCCHHHHHHHHhccCCCEEEEeccCCCcccccC----
Confidence 7889999887766321 11111111110 11111110 137899999997535666666555555676655
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccC--CCC---
Q 012368 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY--GDH--- 341 (465)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~--~~~--- 341 (465)
+++|.++|+++|+++|+|++|. +|.. ......+ .+|+++ .+|+++++.++|+++.++++++.+.. ...
T Consensus 143 ~~~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~~--~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~ 217 (356)
T cd06451 143 LEGIGALAKKHDALLIVDAVSS-LGGE--PFRMDEW--GVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFY 217 (356)
T ss_pred HHHHHHHHHhcCCEEEEeeehh-ccCc--ccccccc--CccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCcee
Confidence 8899999999999999999986 5422 1222222 346654 46999987778999999998877642 110
Q ss_pred --------------cCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cceEEE
Q 012368 342 --------------GSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LGLIIG 403 (465)
Q Consensus 342 --------------~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~ 403 (465)
....+.++..+.++.++++.+.. +...++.+++.+++++.|+++ .+........ .+.+.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~ 295 (356)
T cd06451 218 FDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL--GLKLLAKPELRSPTVTA 295 (356)
T ss_pred ecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCcccCCCceEE
Confidence 11123455566777778876543 344556666666666666653 2222111111 233344
Q ss_pred EEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 404 IEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 404 i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+.++ .+..++++.|.++ ||.+.++. .++++|++++..+|++|+++++++|+++++
T Consensus 296 ~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 296 VLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred EECCCCCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 5443 3567899999998 99998653 246899999999999999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=191.08 Aligned_cols=312 Identities=14% Similarity=0.133 Sum_probs=197.6
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+|.|++++.+... +....+ .+...++++.+++.++. ..|+++.||++++..++..+.. ++
T Consensus 10 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~-----------~~ 74 (355)
T TIGR03301 10 TSATVRDAMLVDWC---HWDSEF-NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP-----------RD 74 (355)
T ss_pred CCHHHHHHhhhhcc---CCCHHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC-----------CC
Confidence 45667777665221 211112 25578889999998872 2688899999999999987651 46
Q ss_pred ceEEEEcCCcccCccc-cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-CCeEEEEEcccCCCCCcccCCHHH
Q 012368 191 TEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-GKTAAVFVEPIQGEGGIYSATKEF 268 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~a~vi~ep~~~~~G~~~~~~~~ 268 (465)
+++++.++.+++.... .....+..... .+...+. ..|+++++++++. .++..+++..+++.+|.+.+
T Consensus 75 ~~vi~~~~~~~~~~~~~~a~~~g~~~~~---i~~~~~~----~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~---- 143 (355)
T TIGR03301 75 GKLLVLINGAYGERLAKICEYLGIPHTD---LNFSEYE----PPDLNRIEEALAADPDITHVATVHHETTTGILNP---- 143 (355)
T ss_pred CeEEEECCCchhhHHHHHHHHcCCceEE---EecCCCC----CCCHHHHHHHHHhCCCceEEEEEecCCcccchhH----
Confidence 7788888877765321 11111111100 0111110 1278999999863 23444444334445566654
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCC--------
Q 012368 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD-------- 340 (465)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~-------- 340 (465)
+++|.++|++||+++|+|++++ +|. ..+....+++...+.+++|+++++.++|++++++++++.+....
T Consensus 144 ~~~i~~l~~~~~~~livD~~~s-~g~--~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (355)
T TIGR03301 144 LEAIAKVARSHGAVLIVDAMSS-FGA--IPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLY 220 (355)
T ss_pred HHHHHHHHHHcCCEEEEEeccc-cCC--cccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHH
Confidence 8999999999999999999876 542 22233333443334567899976556799999999888765210
Q ss_pred ---------CcCCCCChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHcCCCcee-eeccceEEEEEe
Q 012368 341 ---------HGSTFAGSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLARNPHVKD-VRGLGLIIGIEF 406 (465)
Q Consensus 341 ---------~~~t~~~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~i~~ 406 (465)
....++.+++.+.++.++++.+.++ +..++++++.+++++.|+++ ....+.. ....+.++++.+
T Consensus 221 ~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~--g~~~~~~~~~~~~~~~~~~~ 298 (355)
T TIGR03301 221 DQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL--GFQPLLPERWQSPIIVSFLY 298 (355)
T ss_pred HHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc--CCeeecCCCCCCCcEEEEEC
Confidence 0123456777888888888876433 34455566666666666543 1111111 123345566666
Q ss_pred c----CChHHHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 407 D----VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 407 ~----~~~~~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+ ....++.+.|.++||.+.++.. .+++||++...++++|++++++.|++++
T Consensus 299 ~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 299 PDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred CCCCcchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 3 2346899999999999988642 2689999888889999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=189.07 Aligned_cols=326 Identities=17% Similarity=0.110 Sum_probs=205.3
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC-------CHHHHHHHHHHHhhcC---CCeEEecCCHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY-------SIPQIELAKRLVACSF---ADRVFFSNTGTEAN 168 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~ 168 (465)
.|+|..+ .|-.++.|.+++.+.++.......... .....++++.+++.++ .++|++++|+++++
T Consensus 20 ~yld~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l 93 (403)
T TIGR01979 20 VYLDSAA------TSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESI 93 (403)
T ss_pred EEEeCcc------ccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHH
Confidence 5788654 344678899999887754211111111 1125577788888887 35899999999999
Q ss_pred HHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCcccCcccccc---ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC
Q 012368 169 EAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP 244 (465)
Q Consensus 169 ~~al~~a~~-~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 244 (465)
..++..+.. .. ++++.|++.++.|++....... ..+.... ..+...+.. -|++++++.+.+
T Consensus 94 ~~~~~~~~~~~~--------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~---~v~~~~~~~----~~~~~l~~~i~~ 158 (403)
T TIGR01979 94 NLVAYSWGDSNL--------KAGDEIVISEMEHHANIVPWQLLAERTGATLK---FIPLDDDGT----LDLDDLEKLLTE 158 (403)
T ss_pred HHHHHHhhhhcC--------CCCCEEEECcchhhHHHHHHHHHHHhcCcEEE---EEecCCCCC----CCHHHHHHHhcc
Confidence 988876531 11 1578899998887764322111 1111100 011111111 278999999975
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccc
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLP 322 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~ 322 (465)
++++|++..+++..|.+.+ +++|.++|++||+++|+|++|. +|.. ..... ...+|+++ ++|.+|. ..
T Consensus 159 -~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K~~gp-~G 227 (403)
T TIGR01979 159 -KTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQ--ALDCDFYVFSGHKMYGP-TG 227 (403)
T ss_pred -CCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCcc--ccCCCEEEEecccccCC-CC
Confidence 4666666666666777766 8999999999999999999986 3221 11122 23467764 5697753 34
Q ss_pred eeeEEeCHHHHhhccCCCCcC-----------C-------C---CChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHH
Q 012368 323 IGAALVTEKVASAINYGDHGS-----------T-------F---AGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYF 378 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~-----------t-------~---~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l 378 (465)
+|++++++++++.+.+...++ . | +.+...++++.++++.+.+ +...++..++.+++
T Consensus 228 ~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l 307 (403)
T TIGR01979 228 IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYA 307 (403)
T ss_pred ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 899999998877664321100 0 1 2345566677777776543 23445555555555
Q ss_pred HHHHHHHHHcCCCceeee-----ccceEEEEEec-CChHHHHHHHHHCCceEeecC-----------CCCEEEEecCCCC
Q 012368 379 KETLKQKLARNPHVKDVR-----GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLII 441 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~-----~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------~~~~lRi~~~~~~ 441 (465)
++.| ...+.+.... ..+.++.+.++ ....++.+.|.++||.+.++. .++++|++++...
T Consensus 308 ~~~l----~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~ 383 (403)
T TIGR01979 308 LERL----GEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYN 383 (403)
T ss_pred HHHH----hcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCC
Confidence 4444 3343222221 23567777763 456778888999999987532 1368999999999
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 012368 442 SEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 442 t~e~i~~~l~~l~~~l~~~ 460 (465)
|++|++++++.|+++++.+
T Consensus 384 t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 384 TEEDIDALVEALKKVRKFF 402 (403)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=189.49 Aligned_cols=329 Identities=16% Similarity=0.114 Sum_probs=207.9
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC-------CHHHHHHHHHHHhhcC---CCeEEecCCHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY-------SIPQIELAKRLVACSF---ADRVFFSNTGTE 166 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~la~~l~~~~~---~~~v~~~~sG~e 166 (465)
+..|||..+ .|..++.|.+++.+.+........... .....++++.++++++ .++|+|++|+++
T Consensus 32 ~~iyLd~a~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 105 (424)
T PLN02855 32 KLVYLDNAA------TSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE 105 (424)
T ss_pred CeEEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence 346788644 244678899999887765321111111 1124577888888887 368999999999
Q ss_pred HHHHHHHHHH-HHhhhcCCCCCCCCceEEEEcCCcccCccccccc---cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhc
Q 012368 167 ANEAAIKFAR-KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL---TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242 (465)
Q Consensus 167 A~~~al~~a~-~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 242 (465)
++..+++... ... .++++|++.++.|++........ .+.... +.+...+.. .|++++++.+
T Consensus 106 al~~i~~~~~~~~~--------~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~---~v~~~~~~~----~~~~~l~~~i 170 (424)
T PLN02855 106 AINLVAYTWGLANL--------KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLK---FVGLTPDEV----LDVEQLKELL 170 (424)
T ss_pred HHHHHHHHhhhhcC--------CCcCEEEECCCccHHHHHHHHHHHHHcCCEEE---EEecCCCCC----cCHHHHHHHh
Confidence 9998887531 111 15788999998876543222111 111100 011111111 2789999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCc
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGG 320 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G 320 (465)
++ ++++|++..+++..|.+.+ +++|.++|+++|+++|+|++|. +|.. . .+.....+|++ ++.|.+| .
T Consensus 171 ~~-~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~--~--~~~~~~~~d~~~~s~~K~~g-p 239 (424)
T PLN02855 171 SE-KTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM--P--VDVQTLGADFLVASSHKMCG-P 239 (424)
T ss_pred cc-CceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc--C--CCchhcCCCEEEeecccccC-C
Confidence 75 5677777777777777776 8899999999999999999995 4322 1 22222346766 4569543 3
Q ss_pred cceeeEEeCHHHHhhccCCCCcC------------------CC---CChHHHHHHHHHHHHHhcC---chHHHHHHHHHH
Q 012368 321 LPIGAALVTEKVASAINYGDHGS------------------TF---AGSPLVCNAAIAVLDKISN---PAFLASVSKKGH 376 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~------------------t~---~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~ 376 (465)
.++|++++++++++.+.+...+. -| +.+..+.++..++++.+.+ +...++..++.+
T Consensus 240 ~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 319 (424)
T PLN02855 240 TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGT 319 (424)
T ss_pred CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 35899999999887765421000 01 1345566666677776543 233444445555
Q ss_pred HHHHHHHHHHHcCCCceee-------eccceEEEEEec-CChHHHHHHHHHC-CceEeecC-----------CCCEEEEe
Q 012368 377 YFKETLKQKLARNPHVKDV-------RGLGLIIGIEFD-VSATPVVDACRDS-GLLVLTAG-----------KGNVVRLV 436 (465)
Q Consensus 377 ~l~~~l~~~~~~~~~~~~~-------~~~g~~~~i~~~-~~~~~~~~~l~~~-Gv~v~~~~-----------~~~~lRi~ 436 (465)
++++.|+ +.+.+... ...+.++.+.++ ....++.+.|.++ ||.+..+. ..+.+|++
T Consensus 320 ~l~~~L~----~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS 395 (424)
T PLN02855 320 YLYEKLS----SVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARAS 395 (424)
T ss_pred HHHHHHh----cCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEE
Confidence 5554443 34322211 123456677764 4567889999887 99987532 13579999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 437 PPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+++..|++|++++++.|+++++.++
T Consensus 396 ~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 396 LYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred eccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=187.28 Aligned_cols=329 Identities=16% Similarity=0.119 Sum_probs=202.3
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCC------CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY------YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEA 170 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~------~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~ 170 (465)
.|+|..+ .|..++.+++++.+.++......... .....+++++.+++.++ .++|++++|+++++..
T Consensus 2 ~yld~a~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~ 75 (381)
T PRK02948 2 IYLDYAA------TTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYL 75 (381)
T ss_pred EeccCCC------CCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHH
Confidence 3677554 34578899999998876432111111 11236678888888886 6789999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
+++.+..... .+++.|++....|+........+ .+.... ..+..... ..|++++++.+++ ++.
T Consensus 76 ~~~~~~~~~~-------~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~---~v~~~~~~----~~d~~~l~~~l~~-~~~ 140 (381)
T PRK02948 76 AIQSLLNALP-------QNKKHIITTPMEHASIHSYFQSLESQGYTVT---EIPVDKSG----LIRLVDLERAITP-DTV 140 (381)
T ss_pred HHHHHHHhcc-------CCCCEEEECCcccHHHHHHHHHHHhCCCEEE---EEeeCCCC----CCCHHHHHHhcCC-CCE
Confidence 8887653110 13566666554443332221111 111100 01111111 1388999999875 456
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeE
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAA 326 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v 326 (465)
+|+++..++++|.+.+ +++|.++|+++|+++|+|++++ ||... .....++ .|++ +++|.+|. ..+|++
T Consensus 141 lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~--~~~~~~~--~d~~~~s~~K~~gp-~G~G~l 210 (381)
T PRK02948 141 LASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLP--IDVFEMG--IDSLSVSAHKIYGP-KGVGAV 210 (381)
T ss_pred EEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-ccccc--cCcccCC--CCEEEecHHhcCCC-CcEEEE
Confidence 7777766667777765 8899999999999999998875 65332 2222333 4555 56798763 237888
Q ss_pred EeCHHH-HhhccCC----CCcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeec--
Q 012368 327 LVTEKV-ASAINYG----DHGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-- 397 (465)
Q Consensus 327 ~~~~~i-~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-- 397 (465)
++++++ +..+.+. .....++.|.++++++.++++.+.+ ++..++++++.+++++.|+++ +......+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~v~~~~~~ 286 (381)
T PRK02948 211 YINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL----PLPIEVEGHS 286 (381)
T ss_pred EEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEeCCC
Confidence 887764 1111110 0112345788888888888886522 334455555555555555443 32111111
Q ss_pred ---cceEEEEEec-CChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHHHHHHH
Q 012368 398 ---LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 398 ---~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
...++.+.+. .+..++...|.++||.+..+.. ++++|++++..+|++|++++++
T Consensus 287 ~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~ 366 (381)
T PRK02948 287 TSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIH 366 (381)
T ss_pred ccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHH
Confidence 1223334443 3567788888899999985320 2689999999999999999999
Q ss_pred HHHHHHHHhhh
Q 012368 452 ILCKTLPVLDS 462 (465)
Q Consensus 452 ~l~~~l~~~~~ 462 (465)
.|+++++++.+
T Consensus 367 ~l~~~~~~~~~ 377 (381)
T PRK02948 367 ALETIGNQFYR 377 (381)
T ss_pred HHHHHHHHHhc
Confidence 99999877643
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=196.38 Aligned_cols=246 Identities=10% Similarity=-0.004 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012368 140 IPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 140 ~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
+.++++++++.+.++ .++|++|+|+++|+..+++++.. ++++.|++++|+|+.+...+...+....
T Consensus 111 ~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~----------~pGd~Vli~~P~Y~~y~~~~~~~g~~~v 180 (407)
T PLN02368 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR----------GEKDGVLVPVPQYPLYSATISLLGGTLV 180 (407)
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC----------CCCCEEEEeCCCCccHHHHHHHcCCEEE
Confidence 446777777766544 67999999999999998886641 1689999999999988766554443221
Q ss_pred cCCCCCCCCCCceEeeCCCHHHHHhhcCC------CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 012368 216 YRSPFEPVMPGVNFVEYGNIEATRKLIQP------GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ 289 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~------~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (465)
.. +...+..+- -|+++|++.+++ +..++++++|.|++| .+.+++.+++|.++|++||++||+||+|
T Consensus 181 ~v----~~~~~~~~~--~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG--~v~s~e~l~~l~~~a~~~~~~II~DE~Y 252 (407)
T PLN02368 181 PY----YLEESENWG--LDVNNLRQSVAQARSKGITVRAMVIINPGNPTG--QCLSEANLREILKFCYQERLVLLGDEVY 252 (407)
T ss_pred EE----ecccccCCC--CCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCC--ccCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 11 111111111 278999998862 234477888977766 3568999999999999999999999999
Q ss_pred cCCCCCCc-cc-cc-cc----------cCCcccEEEecccC-C-CccceeeEE---eCHHHHhhccCCCCcCCCCChHHH
Q 012368 290 CGLGRTGY-LW-AH-EH----------YGIFPDIMTLAKPL-A-GGLPIGAAL---VTEKVASAINYGDHGSTFAGSPLV 351 (465)
Q Consensus 290 ~g~gr~g~-~~-~~-~~----------~~~~pdi~t~sK~l-g-~G~~iG~v~---~~~~i~~~~~~~~~~~t~~~~~~~ 351 (465)
..+.+.+. .+ .. .. .+...-+.+|||++ + .|||+||++ +++++++.+... ...+++.|.++
T Consensus 253 ~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~-~~~~~~~~~~~ 331 (407)
T PLN02368 253 QQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKV-ASIALSPNVSG 331 (407)
T ss_pred cccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHH-hcccCCCCcHH
Confidence 98754442 11 11 11 11122234689999 5 599999998 488888887653 23467788899
Q ss_pred HHHHHHHHHHhc--C---chHHHHH---HHHHHHHHHHHHHHHHcCCCceeeeccceEEEE
Q 012368 352 CNAAIAVLDKIS--N---PAFLASV---SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404 (465)
Q Consensus 352 ~~aa~a~L~~~~--~---~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i 404 (465)
|.|+.++|+.-. + +++.++. .+..+..++.+.+.+.+.+.+....+.|.|+.+
T Consensus 332 Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~ 392 (407)
T PLN02368 332 QIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSF 392 (407)
T ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEec
Confidence 999999886321 0 1122222 222222333344444555555555566766643
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=191.64 Aligned_cols=253 Identities=10% Similarity=0.069 Sum_probs=149.8
Q ss_pred CCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--CCeEE-EEEcccCCCCCcccCC
Q 012368 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTAA-VFVEPIQGEGGIYSAT 265 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~a~-vi~ep~~~~~G~~~~~ 265 (465)
++|.|++.+|+|.++...+...+...... ++.....+ -.|++.+++.+.. .++.+ ++.+|.||+| .+++
T Consensus 141 pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v----~l~~~~~~--~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG--~v~s 212 (423)
T PLN02397 141 PGSTIYIPNPTWGNHHNIFRDAGVPVRTY----RYYDPKTR--GLDFDGLLEDLKAAPDGSFVLLHACAHNPTG--VDPT 212 (423)
T ss_pred CCCEEEEeCCCchhHHHHHHHcCCeEEEe----ecccCcCC--ccCHHHHHHHHHhCCCCCEEEEeCCCCCCCC--CCCC
Confidence 68999999999988876555444332211 11000000 0277877776641 23333 3344566665 4568
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---ccccccc---C-CcccEEEecccCC-CccceeeEE--e-CHHHHh
Q 012368 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHEHY---G-IFPDIMTLAKPLA-GGLPIGAAL--V-TEKVAS 334 (465)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~~~~---~-~~pdi~t~sK~lg-~G~~iG~v~--~-~~~i~~ 334 (465)
.+.+++|.++|++||+++|+||+|.+|...+. ......+ + ...-+.+|||.++ .|||+||++ + ++++++
T Consensus 213 ~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~ 292 (423)
T PLN02397 213 PEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAV 292 (423)
T ss_pred HHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHH
Confidence 99999999999999999999999999854331 1111111 1 1223347999999 599999984 4 555444
Q ss_pred h----ccCCCCcCCCCChHHHHHHHHHHHHHhc-CchH---HHHHHHHHHHHHHHHHHHHHcCC---Cceee-eccceEE
Q 012368 335 A----INYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAF---LASVSKKGHYFKETLKQKLARNP---HVKDV-RGLGLII 402 (465)
Q Consensus 335 ~----~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~---~~~~~~~~~~l~~~l~~~~~~~~---~~~~~-~~~g~~~ 402 (465)
. +........++.+.+++.++.++|+... .+.+ ++++++..+..++.+.+.+.+++ .+..+ +..|.|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl 372 (423)
T PLN02397 293 RVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFS 372 (423)
T ss_pred HHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEE
Confidence 3 3221222334566778888777775311 0111 23333333333333433333332 12222 3345556
Q ss_pred EEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 403 GIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 403 ~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
|+.++ .++++.|+ +.||.+.+. + |+++. ..+++.+++++++|++++.
T Consensus 373 ~~~l~---~~~~~~Ll~~~~V~v~~~---~--Ri~~~-~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 373 FTGLN---KEQVDRMTKEYHIYMTRD---G--RISMA-GLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred ecCCC---HHHHHHHHHhCCEEECCC---C--eEEEe-eCCHHHHHHHHHHHHHHHh
Confidence 66553 45888886 569998642 2 77653 3789999999999999974
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=184.60 Aligned_cols=313 Identities=17% Similarity=0.136 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCC--HHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYS--IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
++|.+.+++.+...........++. ....+++++|+++++ .+.+++++||++++..++.+++..... . .++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~----~~g 106 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLARE-E----KRT 106 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhc-c----CCC
Confidence 5677788887765442111222222 335788999999998 457889999999999988876542210 0 135
Q ss_pred ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCcccCC
Q 012368 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~ 265 (465)
+.|++.+++|+.+...+...+. .+..++. .|++++++++++++.+++++.|. ++.|.+.+
T Consensus 107 ~~vl~~~~~h~~~~~~~~~~G~-------------~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~-~~tG~~~~- 171 (373)
T TIGR03812 107 PNIIVPESAHFSFEKAAEMLGL-------------ELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGT-TELGQIDD- 171 (373)
T ss_pred cEEEECCcchHHHHHHHHHcCC-------------eEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCC-CCCCccCC-
Confidence 7899998888765432221111 1122222 38999999997555566667665 44566655
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCCC----Ccc-ccccccCCcccEEEec--ccCCCccceeeEE-eCHHHHhhcc
Q 012368 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRT----GYL-WAHEHYGIFPDIMTLA--KPLAGGLPIGAAL-VTEKVASAIN 337 (465)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~gr~----g~~-~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~-~~~~i~~~~~ 337 (465)
+++|.++|+++|+++|+|++|.++-.. |.. ...+..-...|.+++| |...++.|.|+++ .++++++.+.
T Consensus 172 ---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~ 248 (373)
T TIGR03812 172 ---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLS 248 (373)
T ss_pred ---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhc
Confidence 899999999999999999999754100 000 0011111134666554 7444567887665 5777777663
Q ss_pred CCC-C-cCC------CCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe
Q 012368 338 YGD-H-GST------FAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406 (465)
Q Consensus 338 ~~~-~-~~t------~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~ 406 (465)
... . ... .+.++..++++.++|+.+.++ +..++..++.+++++.|+++ +......+...++.+.+
T Consensus 249 ~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v~~~~ 324 (373)
T TIGR03812 249 VDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI----GFEPVIEPVLNIVAFEV 324 (373)
T ss_pred ccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEcCCCceEEEEEe
Confidence 211 0 110 123456777888888876543 34566666666666666553 32222233455555655
Q ss_pred cCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 407 DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 407 ~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+ ...++.+.|.++||++.....+.++|++++..+|++|++++++.|++
T Consensus 325 ~-~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 325 D-DPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred C-CHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 3 35679999999999998764447899999989999999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=186.80 Aligned_cols=283 Identities=12% Similarity=0.121 Sum_probs=186.8
Q ss_pred HHHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcc-ccccccCCCC
Q 012368 141 PQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTM-GALALTSKEH 215 (465)
Q Consensus 141 ~~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~-~~~~~~~~~~ 215 (465)
...++++.+++.++. +.|++|+||++|++.++..+.. +++++|+..+++++... ......+
T Consensus 36 ~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~-----------~~~~vlv~~~~~~~~~~~~~a~~~g--- 101 (363)
T TIGR02326 36 VVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP-----------KDGKLLVVINGAYGARIVQIAEYLG--- 101 (363)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC-----------CCCeEEEEeCChhhHHHHHHHHHcC---
Confidence 366778888888872 3699999999999998876541 46778887777777641 1111111
Q ss_pred cCCCCCCCCCCceEeeC-----CCHHHHHhhcCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 012368 216 YRSPFEPVMPGVNFVEY-----GNIEATRKLIQPG-KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ 289 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~-~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (465)
..+..++. .|+++++++++.+ ++.++.+..+.+.+|.+.+ +++|.++|++||+++|+|+++
T Consensus 102 ---------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~~~ 168 (363)
T TIGR02326 102 ---------IPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDAMS 168 (363)
T ss_pred ---------CceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEccc
Confidence 11122221 2789999998742 3455555555566777766 899999999999999999988
Q ss_pred cCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccCCC------------------CcCCCCChH
Q 012368 290 CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGD------------------HGSTFAGSP 349 (465)
Q Consensus 290 ~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~------------------~~~t~~~~~ 349 (465)
+ +|.. ......+ .+|++ +++|+++++.++|+++++++.++.+.+.. ....|..++
T Consensus 169 ~-~g~~--~~~~~~~--~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~ 243 (363)
T TIGR02326 169 S-FGGI--PIDIAEL--HIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPT 243 (363)
T ss_pred c-ccCc--ccchhhc--CccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcH
Confidence 6 5432 2233333 35665 46699987666899999998877653210 012345677
Q ss_pred HHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEec----CChHHHHHHHHHC
Q 012368 350 LVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFD----VSATPVVDACRDS 420 (465)
Q Consensus 350 ~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~----~~~~~~~~~l~~~ 420 (465)
..+.+..++++.+.++ +..++++++.+++++.|+++ .+...... ...+.+.++.++ .+..++.+.|.++
T Consensus 244 ~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~ 321 (363)
T TIGR02326 244 HVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL--GFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQ 321 (363)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHC
Confidence 7778877888765333 34455566666666666543 22111111 123444556653 2456788999999
Q ss_pred CceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 421 GLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 421 Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
||.+.++.. .+.+|+++....+.+++++++++|++++
T Consensus 322 gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 322 GFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred CEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999987642 3689999766789999999999998876
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-20 Score=183.58 Aligned_cols=316 Identities=13% Similarity=0.079 Sum_probs=191.8
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccC------CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 111 ALGHGDADWIKAVVDQANVLTHVSN------MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
+=|+..|.+++++.+........+. ...++...++.+++++.++.+++++++|+++++..+++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~------- 81 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCE------- 81 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcC-------
Confidence 3466778888888887643222111 112345789999999999989999999999999998886641
Q ss_pred CCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC------CCeEEEEEcccCCC
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP------GKTAAVFVEPIQGE 258 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~------~~~a~vi~ep~~~~ 258 (465)
++++|++..++|.+....+...+.... . .+...+..+ ..|++++++++++ .++++|++...++.
T Consensus 82 ----~gd~Vl~~~~~~~~~~~~~~~~g~~~~-~---v~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~ 151 (361)
T cd06452 82 ----KGDWVVVDGLAHYTSYVAAERAGLNVR-E---VPNTGHPEY--HITPEGYAEVIEEVKDEFGKPPALALLTHVDGN 151 (361)
T ss_pred ----CCCEEEEcCCcchHHHHHHHhcCCEEE-E---EecCCCCCc--ccCHHHHHHHHHHHhhccCCCceEEEEECCCCC
Confidence 578899988877655422221211111 0 111111000 1278999888852 24556665554555
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC
Q 012368 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY 338 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~ 338 (465)
.|...+ +++|.++|+++|+++|+||+|. +|.. .+....++....+.+++|++++|.|+|++++++++++.+..
T Consensus 152 tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~ 224 (361)
T cd06452 152 YGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFR 224 (361)
T ss_pred Ceeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhc
Confidence 565544 8999999999999999999986 3221 12223334433445678999877799999999999888754
Q ss_pred CCCc------CCCC--ChHHHHHHHHHHHHHhcCchHHHHHH---HHHHHHHHHHHHHHHcCCCceee---eccceEEEE
Q 012368 339 GDHG------STFA--GSPLVCNAAIAVLDKISNPAFLASVS---KKGHYFKETLKQKLARNPHVKDV---RGLGLIIGI 404 (465)
Q Consensus 339 ~~~~------~t~~--~~~~~~~aa~a~L~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~---~~~g~~~~i 404 (465)
.... ..+. .++..+.++.++++.+. +..+++. ++.+++++.| .+.+.+..+ .+..+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~l~~~L----~~l~g~~v~~~~~~~~n~~~~ 298 (361)
T cd06452 225 TSQMFKIKEVELLGCTLRGAPLVTLMASFPHVK--ERVKRWDEEVEKARWFVAEL----EKIEGIKQLGEKPKNHDLMFF 298 (361)
T ss_pred cccccccceeeeeccccCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----hcCCCeEEECCCCCCCceEEE
Confidence 2211 0011 11223444455554331 1122222 2234444444 444322221 234455555
Q ss_pred Eec----------CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 405 EFD----------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 405 ~~~----------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+.. ....++.+.|+++||.+...+.++++|+... .+++++++.++++|++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~~-g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 299 ETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLSTY-GLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EcCCcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence 542 1123689999999999755444568899863 379999999999998654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-20 Score=183.01 Aligned_cols=325 Identities=17% Similarity=0.150 Sum_probs=197.9
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhccccc---CCCCCHHHHHHHHHHHhh---cC---CCeEEecCCHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS---NMYYSIPQIELAKRLVAC---SF---ADRVFFSNTGTEANEA 170 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~la~~l~~~---~~---~~~v~~~~sG~eA~~~ 170 (465)
|+|..++.. .++.|++++.+.++.....+ ..++......+.+.+++. .+ .++|+||+|++|++..
T Consensus 2 yld~aa~~~------~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~ 75 (382)
T TIGR03403 2 YLDNNATTM------LDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW 75 (382)
T ss_pred cccCcCCCC------CCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence 677666533 67889999999886521111 112222233444444333 33 5799999999999999
Q ss_pred HHHHHHH-Hh-hhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcC
Q 012368 171 AIKFARK-FQ-RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQ 243 (465)
Q Consensus 171 al~~a~~-~t-~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~ 243 (465)
+++.+.. .. . +++++|++....|+........+.. ....+..+|. -|+++++++++
T Consensus 76 ~~~~~~~~~~~~-------~~~~~vi~~~~e~ps~~~~~~~~~~----------~G~~v~~v~~~~~g~~d~~~l~~~i~ 138 (382)
T TIGR03403 76 VLKGVYFDEILK-------GGKNHIITTEVEHPAVRATCAFLES----------LGVEVTYLPINEQGTITAEQVREAIT 138 (382)
T ss_pred HHHHHHHhhccc-------CCCCEEEEcCCccHHHHHHHHHHHH----------CCCEEEEEecCCCCCCCHHHHHHhcc
Confidence 9886531 00 1 1245688776555444322111100 0011222222 17899999997
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCcc
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGL 321 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~ 321 (465)
+ ++++|++...++.+|.+.+ +++|.++|+++|+++|+|+++. +|.. ..+.....+|++++| |.+| ..
T Consensus 139 ~-~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~----~~~~~~~~~D~~~~s~~K~~g-p~ 207 (382)
T TIGR03403 139 E-KTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI----PVDVQKAGVDFLSFSAHKFHG-PK 207 (382)
T ss_pred c-CCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC----ccCccccCCCEEEEcchhhCC-CC
Confidence 5 3566666655666677666 8899999999999999999986 3321 122223457888777 9654 22
Q ss_pred ceeeEEeCHHHHhhccCCCC-------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 322 PIGAALVTEKVASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~-------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
.+|+++.++.. .+.+... ...++.|.+++.++.++++...+ ..+...+..+.+++.|.+.+.+.+.+..
T Consensus 208 G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~~~~ 283 (382)
T TIGR03403 208 GVGGLYIRKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLEDALLELPDVFV 283 (382)
T ss_pred ceEEEEECCCC--CCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 36777776543 1212110 11334677777777777875532 2344444445555555554444553333
Q ss_pred eec----cceEEEEEec-CChHHHHHHHHHCCceEeecC-----------------C-----CCEEEEecCCCCcHHHHH
Q 012368 395 VRG----LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------------K-----GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 395 ~~~----~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------------~-----~~~lRi~~~~~~t~e~i~ 447 (465)
+.+ .+.++.+.++ .+...+...|.++||.++.+. . ++.+|++++...|++|+|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did 363 (382)
T TIGR03403 284 VGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEID 363 (382)
T ss_pred ECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHH
Confidence 322 1445556663 467778888889999998521 0 257999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 012368 448 QAVEILCKTLPVLDS 462 (465)
Q Consensus 448 ~~l~~l~~~l~~~~~ 462 (465)
++++.|++++++++.
T Consensus 364 ~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 364 YTIEVFKKAVQRLRA 378 (382)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-20 Score=184.05 Aligned_cols=327 Identities=20% Similarity=0.169 Sum_probs=196.2
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-C------CCCHHHHHHHHHHHhhcC--CCeEEecCCHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-M------YYSIPQIELAKRLVACSF--ADRVFFSNTGTE 166 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~------~~~~~~~~la~~l~~~~~--~~~v~~~~sG~e 166 (465)
++..|+|..+ +|..++.+.+++.+.+........ . .......++ +.+ +.++ +++|+|++|+++
T Consensus 26 ~~~iyld~~a------~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~ 97 (406)
T TIGR01814 26 NAVIYLDGNS------LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTI 97 (406)
T ss_pred CCcEEecCCC------cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchH
Confidence 3346777443 344578899999887765322111 0 111222333 334 5666 678999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc---ccCCCCcCCCCCCCCCCceEeeC-----CCHHHH
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSPFEPVMPGVNFVEY-----GNIEAT 238 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l 238 (465)
++..+++.+.... .+++.|++.+..|+........ ..+... .. -...++. -|++++
T Consensus 98 ~l~~~~~~~~~~~--------~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~-~~-------~~~~~~~~~~g~~~~~~l 161 (406)
T TIGR01814 98 NLHLLLASFYKPT--------PKRYKILLEAKAFPSDHYAIESQLQLHGLTV-EE-------SMVQIEPREEETLRLEDI 161 (406)
T ss_pred HHHHHHHHhcCCc--------CCccEEEecCCCCChHHHHHHHHHHhcCCCc-cc-------ceEEeccCCCCccCHHHH
Confidence 9999888652100 0123456555666443221111 111110 00 0011111 167888
Q ss_pred HhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--c
Q 012368 239 RKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--A 314 (465)
Q Consensus 239 e~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--s 314 (465)
+++++ .+++++|+++.+++.+|.+.| +++|.++|+++|+++++|++|+ +|.. .+.....+ +|++++ .
T Consensus 162 ~~~~~~~~~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~g--vD~~~~s~h 232 (406)
T TIGR01814 162 LDTIEKNGDDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDWG--VDFACWCTY 232 (406)
T ss_pred HHHHHhcCCCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccCC--CCEEEEcCc
Confidence 88774 346889999999999999887 9999999999999999999997 4432 22233334 566654 5
Q ss_pred ccCCCccceeeEEeCHHHHhhccCCCCc-------------C----------CCCChHHHHHHHHHHHHHhcC---chHH
Q 012368 315 KPLAGGLPIGAALVTEKVASAINYGDHG-------------S----------TFAGSPLVCNAAIAVLDKISN---PAFL 368 (465)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~-------------~----------t~~~~~~~~~aa~a~L~~~~~---~~~~ 368 (465)
|++.+|.. |+++..++..+.+.+...+ . ..+.|..++++..++|+.+.+ +...
T Consensus 233 K~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~ 311 (406)
T TIGR01814 233 KYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALR 311 (406)
T ss_pred cccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99976543 4444433333233221000 0 012455677777788887744 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce-----eeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEec-CCCCc
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK-----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP-PLIIS 442 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~-~~~~t 442 (465)
++.+++.+++++.|+++....+.+. .....+.++.+.++.+..++.+.|.++||.+..... +.+|+++ ++.+|
T Consensus 312 ~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~~~~~-~~iRiS~~~~~nt 390 (406)
T TIGR01814 312 KKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGDKREP-SVIRVAPVPLYNT 390 (406)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEeccCC-CeEEEechhccCC
Confidence 6666666666666655321011111 111234566666654567899999999998875443 6899999 68999
Q ss_pred HHHHHHHHHHHHHHH
Q 012368 443 EQELDQAVEILCKTL 457 (465)
Q Consensus 443 ~e~i~~~l~~l~~~l 457 (465)
++||++++++|++++
T Consensus 391 ~~did~l~~~l~~~~ 405 (406)
T TIGR01814 391 FVDVYDAVNVLEEIL 405 (406)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=182.18 Aligned_cols=319 Identities=13% Similarity=0.058 Sum_probs=199.8
Q ss_pred HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 012368 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197 (465)
Q Consensus 118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~ 197 (465)
.+.+++.+++..... .+.+.....+|++.++++++.+.|++|+||++|+..++.+.. +++| ||+.+
T Consensus 58 a~~~a~~~a~~~g~~--~Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all-----------~pGD-Vii~~ 123 (460)
T PRK13238 58 AMSDRQWAAMMRGDE--AYAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLI-----------KKGD-VVPSN 123 (460)
T ss_pred hhhHHHHHHHHhCCc--ccCCCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhC-----------CCCC-EEccC
Confidence 477777777754322 222344477899999999998899999999999999987664 2678 99999
Q ss_pred CCcccCccccccccCCCCcCCCCCCCCCC---ceEeeC---CCHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHH
Q 012368 198 NSFHGRTMGALALTSKEHYRSPFEPVMPG---VNFVEY---GNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEF 268 (465)
Q Consensus 198 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~ 268 (465)
|.|..+.......++.+.+. +.... ...-++ -|+++|++++.+ .++++|+++..++.+|..+++.+.
T Consensus 124 p~~~~~~~~i~~~G~~~v~v----~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~ 199 (460)
T PRK13238 124 YHFDTTRAHIELNGATAVDL----VIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMAN 199 (460)
T ss_pred CcccchHHHHHHcCCEEEEE----eccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHH
Confidence 98876654444444433322 11110 000011 289999999973 346666666544444435668999
Q ss_pred HHHHHHHHHHhCCEEEEeccccC----CCCC---Cc-cccccc----cCCcccEEEec--ccCCCccceeeEEeC-HHHH
Q 012368 269 LQFLRDACDDAGALLVFDEVQCG----LGRT---GY-LWAHEH----YGIFPDIMTLA--KPLAGGLPIGAALVT-EKVA 333 (465)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g----~gr~---g~-~~~~~~----~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~ 333 (465)
+++|+++|++||++||.|+++.. |+.. |. ...... .+-..|+.++| |...++. .|+++++ ++++
T Consensus 200 l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~-GG~i~~~d~~l~ 278 (460)
T PRK13238 200 LRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNI-GGLLCFRDEDLF 278 (460)
T ss_pred HHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcc-eeEEEcChHHHH
Confidence 99999999999999999997642 1100 10 000000 01125666666 2222212 3566666 5788
Q ss_pred hhccCCC---C-cCCCCChHHH-HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC
Q 012368 334 SAINYGD---H-GSTFAGSPLV-CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 334 ~~~~~~~---~-~~t~~~~~~~-~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~ 408 (465)
+.++... + ..|+++.+.. ++|...+|+...++++.+...++.++|.+.|.+. .++.+ .+..|.++.+++..
T Consensus 279 ~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~--G~~~~--~p~Gg~~v~~d~~~ 354 (460)
T PRK13238 279 TECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA--GVPIQ--TPAGGHAVFVDAGK 354 (460)
T ss_pred HHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC--CCCeE--ccCCceEEEEEchh
Confidence 7776532 2 3478876555 5555556765445566666666667777777653 34332 23345555566521
Q ss_pred ----------ChHHHHHHHH-HCCceEeecC----------------CCCEEEEecCC-CCcHHHHHHHHHHHHHHHHH
Q 012368 409 ----------SATPVVDACR-DSGLLVLTAG----------------KGNVVRLVPPL-IISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 409 ----------~~~~~~~~l~-~~Gv~v~~~~----------------~~~~lRi~~~~-~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+.+++.+|+ +.||.+.+.+ ..+.+||.++- ..|.++++.+.++|.++.++
T Consensus 355 ~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 355 FLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred cCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 3467888877 6799887753 02679998874 44899999999999887654
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-19 Score=180.74 Aligned_cols=309 Identities=14% Similarity=0.110 Sum_probs=193.2
Q ss_pred CCHHHHHHHHHHHhhcccc--cCCCCC-----HHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQANVLTHV--SNMYYS-----IPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~--~~~~~~-----~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.++.+.+++.+.++..... ...+.. ....++++.++++++ .++|++++|+++++..++....
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-------- 83 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLL-------- 83 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhcc--------
Confidence 5678999999888764211 111221 346788889999887 2489999999999998887532
Q ss_pred CCCCCCceEEEEcCCcccCccccccc---cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCc
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALAL---TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGI 261 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~ 261 (465)
.++++|++.++.|++........ .+.... ..+...+. ..|++++++++++ ++++|++...++.+|.
T Consensus 84 ---~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~ 152 (376)
T TIGR01977 84 ---KEGDHVITTPMEHNSVARPLECLKEQIGVEIT---IVKCDNEG----LISPERIKRAIKT-NTKLIVVSHASNVTGT 152 (376)
T ss_pred ---CCCCEEEECcchhhHHHHHHHHHHHHcCcEEE---EEecCCCC----CcCHHHHHHhcCC-CCeEEEEECCCCCccc
Confidence 15788999887775543211111 011100 00111111 1279999999975 4566666665566676
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHH-HhhccC
Q 012368 262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKV-ASAINY 338 (465)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i-~~~~~~ 338 (465)
+.+ +++|.++|+++|+++|+|++++ +|... +... ...+|++++| |+++++-..|+++.+++. +..+..
T Consensus 153 ~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~ 223 (376)
T TIGR01977 153 ILP----IEEIGELAQENGIFFILDAAQT-AGVIP--IDMT--ELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKS 223 (376)
T ss_pred cCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC--CCch--hcCCCEEEecccccccCCCCceEEEEcCCcCcCceec
Confidence 665 8899999999999999999996 43321 1122 2346777655 998764456766665543 222211
Q ss_pred CCC---c-------------CCCCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHcCCCceee----
Q 012368 339 GDH---G-------------STFAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLARNPHVKDV---- 395 (465)
Q Consensus 339 ~~~---~-------------~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---- 395 (465)
... . ...+.+...+.+..++++.+.+. ...++.+++.+++++.|.+ .+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~----~~~~~~~~~~~ 299 (376)
T TIGR01977 224 GGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLRE----INKVKIYGPAD 299 (376)
T ss_pred CCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCCeEEeCCCC
Confidence 100 0 01123455666777778776543 3455666666666665554 2322111
Q ss_pred -eccceEEEEEec-CChHHHHHHHHHC-CceEeecC-------------CCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 396 -RGLGLIIGIEFD-VSATPVVDACRDS-GLLVLTAG-------------KGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 396 -~~~g~~~~i~~~-~~~~~~~~~l~~~-Gv~v~~~~-------------~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
...+.++.+.++ .+..++.+.|.++ ||.+..+. ..+.+|++++..+|++|++.++++|++
T Consensus 300 ~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 300 PANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 113556666663 4667899999987 99886532 236899999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-19 Score=178.45 Aligned_cols=329 Identities=15% Similarity=0.140 Sum_probs=199.2
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CC------CHHHHHHHHHHHhhcC--CCeEEecCCHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YY------SIPQIELAKRLVACSF--ADRVFFSNTGTEAN 168 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~-~~------~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~ 168 (465)
+.|+|..+.. ..++.|++++.+.+......... .. .+...++++.+++.++ .++|+|++|+++++
T Consensus 4 ~~yld~aa~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~ 77 (402)
T TIGR02006 4 PIYLDYAATT------PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN 77 (402)
T ss_pred cEEeeCCcCC------CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence 4688977643 36789999998877542111111 11 1235567788888887 56899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (465)
..+++.+..+.. .++++|++..+.|+........+ .+.... ..+...+.. .|++++++++++ +
T Consensus 78 ~~~l~~l~~~~~-------~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~---~v~~~~~~~----~d~~~l~~~l~~-~ 142 (402)
T TIGR02006 78 NLAIKGIAHFYK-------SKGNHIITSKTEHKAVLDTCRYLEREGFEVT---YLPPKSNGL----IDLEELKAAIRD-D 142 (402)
T ss_pred HHHHHHHHHhhc-------CCCCEEEECCCccHHHHHHHHHHHhcCCEEE---EEccCCCCc----CCHHHHHHhcCC-C
Confidence 999887653211 14677888777655433222111 111100 011111111 278999999975 4
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCcccee
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIG 324 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG 324 (465)
+++|++..+++..|.+.+ +++|.++|+++|+++|+|++|+ +|.. .++..+..+|++++| |.+| ...+|
T Consensus 143 ~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~----~~~~~~~~~D~~~~s~~K~~g-p~G~G 212 (402)
T TIGR02006 143 TILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI----PINVNELKVDLMSISGHKIYG-PKGIG 212 (402)
T ss_pred CEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc----ccCccccCCCEEEEehhhhcC-CCceE
Confidence 677777777777787766 8999999999999999999996 4322 122234568999988 9664 34588
Q ss_pred eEEeCHHHHhhccCCCCc-------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee--
Q 012368 325 AALVTEKVASAINYGDHG-------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-- 395 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~-------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-- 395 (465)
+++.+++....+.+...+ ...+.+...+.+..++|+.+.+ . .+...+..+.+++.+.+.+...+.+...
T Consensus 213 ~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~ 290 (402)
T TIGR02006 213 ALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKE-E-MAQDTAHVLALRDRLLNGIKSIEEVYLNGD 290 (402)
T ss_pred EEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 988887655444432221 1123455556666677876643 2 3333444455555555444444422211
Q ss_pred -e-ccceEEEEEec-CChHHHHHHHHHCCceEeecC----------------------CCCEEEEecCCCCcHHHHHHHH
Q 012368 396 -R-GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG----------------------KGNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 396 -~-~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~----------------------~~~~lRi~~~~~~t~e~i~~~l 450 (465)
. .....+.+.|. .+...+...| +|+.+..+. ..+.+|++++...|++|+|+++
T Consensus 291 ~~~~~p~~~~v~f~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~ 368 (402)
T TIGR02006 291 LEHRVPGNLNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAV 368 (402)
T ss_pred ccccCCCeEEEEEeCcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHH
Confidence 1 11111123332 3444555444 355543220 0267999999999999999999
Q ss_pred HHHHHHHHHhh
Q 012368 451 EILCKTLPVLD 461 (465)
Q Consensus 451 ~~l~~~l~~~~ 461 (465)
+.|+++++.++
T Consensus 369 ~~l~~~~~~~~ 379 (402)
T TIGR02006 369 KLVKSAIDKLR 379 (402)
T ss_pred HHHHHHHHHHH
Confidence 99999987764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=179.52 Aligned_cols=311 Identities=12% Similarity=0.079 Sum_probs=191.2
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+|.+.+++.+.. .+.... ......++++.+++.++. +.|++++||++++..++..+.. ++
T Consensus 16 ~~~~~~~a~~~~~---~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~-----------~~ 80 (368)
T PRK13479 16 TSRTVREAMLRDW---GSWDDD-FNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP-----------RD 80 (368)
T ss_pred CCHHHHHHhCCCC---CCCChH-HHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC-----------CC
Confidence 4566666655433 111111 123477888888888872 4588999999999999886641 57
Q ss_pred ceEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-CeEEEEEcccCCCCCcccCCHHH
Q 012368 191 TEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-KTAAVFVEPIQGEGGIYSATKEF 268 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~a~vi~ep~~~~~G~~~~~~~~ 268 (465)
++|++.+++|++... ......+..... .+...+. ..|+++++++++.+ ++.+|++..+++.+|...+
T Consensus 81 ~~vlv~~~~~~~~~~~~~~~~~g~~~~~---i~~~~~~----~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---- 149 (368)
T PRK13479 81 GKVLVPDNGAYGARIAQIAEYLGIAHVV---LDTGEDE----PPDAAEVEAALAADPRITHVALVHCETTTGILNP---- 149 (368)
T ss_pred CeEEEEeCCchHHHHHHHHHHcCCcEEE---EECCCCC----CCCHHHHHHHHHhCCCCcEEEEEcccCccccccC----
Confidence 788888888776531 111111111100 1111111 13789999988632 3444444444445566665
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccCCCC-----
Q 012368 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDH----- 341 (465)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~----- 341 (465)
+++|.++|+++|+++|+|+++ .||.. ...... ..+|++ +++|++.|+.++|++++++++++.+.....
T Consensus 150 ~~~i~~l~~~~~~~livDa~~-~~g~~--~~~~~~--~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~ 224 (368)
T PRK13479 150 LDEIAAVAKRHGKRLIVDAMS-SFGAI--PIDIAE--LGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLD 224 (368)
T ss_pred HHHHHHHHHHcCCEEEEEccc-ccCCc--cccccc--cCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeec
Confidence 889999999999999999776 46432 222222 235665 466998765557999999998877654211
Q ss_pred ------------cCCCCChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHcCCCceeee---ccceEE
Q 012368 342 ------------GSTFAGSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLARNPHVKDVR---GLGLII 402 (465)
Q Consensus 342 ------------~~t~~~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~ 402 (465)
...|+.+...+.+..++++.+.++ +..+++.++.+++++.|++ ++...... ..+...
T Consensus 225 ~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~ 300 (368)
T PRK13479 225 LYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRA----LGFEPLLDAEIQSPIIV 300 (368)
T ss_pred HHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH----cCCcccCCchhcCceEE
Confidence 111356666677777777765333 3344555555555555544 33211111 112223
Q ss_pred EEEec----CChHHHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 403 GIEFD----VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 403 ~i~~~----~~~~~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.+. .+..++.+.|.++||.+.++.. .+.+|++.....+++|++++++.|+++++++
T Consensus 301 ~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 301 TFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred EEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 33332 2457899999999999987532 2579998655679999999999999998765
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-19 Score=176.22 Aligned_cols=315 Identities=18% Similarity=0.216 Sum_probs=209.5
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhccccc--C-CCC----CHHHHHHHHHHHhhcC--C-CeEEecCCHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--N-MYY----SIPQIELAKRLVACSF--A-DRVFFSNTGTEANE 169 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~--~-~~~----~~~~~~la~~l~~~~~--~-~~v~~~~sG~eA~~ 169 (465)
|+|..+ .|..++.|.+++.+.+....... . ... .+...+.++.+++.++ . +.|+|++|+++|+.
T Consensus 2 Yld~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~ 75 (371)
T PF00266_consen 2 YLDNAG------TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALN 75 (371)
T ss_dssp EEBTSS------S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHH
T ss_pred EeeCCC------ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhh
Confidence 666544 34578999999999876532211 1 111 1225678888888887 4 68999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQP 244 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~ 244 (465)
.++..+..... ++++|++.+..|++............ ...+..++. .|++++++.++
T Consensus 76 ~~~~~l~~~~~--------~g~~vl~~~~~~~s~~~~~~~~~~~~---------g~~v~~i~~~~~~~~~~~~~~~~l~- 137 (371)
T PF00266_consen 76 AVASSLLNPLK--------PGDEVLVTSNEHPSNRYPWEEIAKRK---------GAEVRVIPADPGGSLDLEDLEEALN- 137 (371)
T ss_dssp HHHHHHHHHGT--------TTCEEEEEESSHHHHHHHHHHHHHHT---------TEEEEEEEEGTTSSCSHHHHHHHHH-
T ss_pred hhhhccccccc--------cccccccccccccccccccccccccc---------hhhhccccccccchhhhhhhhhhhc-
Confidence 99998743221 58899999999887763222211000 011112221 27899999997
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccc
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLP 322 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~ 322 (465)
.++.+|++..+.+..|.+.| +++|.++|+++|+++++|-+++ +|.. ..+.....+|++++| | ++|+..
T Consensus 138 ~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~----~id~~~~~~D~~~~s~~K-l~gp~G 207 (371)
T PF00266_consen 138 PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCV----PIDLDELGADFLVFSSHK-LGGPPG 207 (371)
T ss_dssp TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTS----S--TTTTTESEEEEESTS-TTSSST
T ss_pred cccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-cccc----cccccccccceeeecccc-cCCCCc
Confidence 57889999999888898887 9999999999999999999987 5432 233334457888776 9 888777
Q ss_pred eeeEEeCHHHHhhccCCCCcCC------------------C---CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012368 323 IGAALVTEKVASAINYGDHGST------------------F---AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~t------------------~---~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
+|+++.+++.++.+.+...+.. | ..+.+...+..++++.+.+.. .++++++...+.+.
T Consensus 208 ~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~ 286 (371)
T PF00266_consen 208 LGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIG-IERIRERIRELAEY 286 (371)
T ss_dssp EEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred hhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccc-cccchhhhhhHHHH
Confidence 8999999999888854321111 1 245566667777787763322 34444444444444
Q ss_pred HHHHHHcCCCcee-----eeccceEEEEEe-cCChHHHHHHHHHCCceEeecCC-----------CCEEEEecCCCCcHH
Q 012368 382 LKQKLARNPHVKD-----VRGLGLIIGIEF-DVSATPVVDACRDSGLLVLTAGK-----------GNVVRLVPPLIISEQ 444 (465)
Q Consensus 382 l~~~~~~~~~~~~-----~~~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~~~-----------~~~lRi~~~~~~t~e 444 (465)
+.+.+.+.+.+.. ....+.++.+.+ ..+...+.+.|.++||.+..+.. ++.+|++++...|++
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~ 366 (371)
T PF00266_consen 287 LREALEELPGIEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEE 366 (371)
T ss_dssp HHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHH
T ss_pred HHhhhhcCCceeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHH
Confidence 4444444453221 234566777777 45678899999999999987422 268999999999999
Q ss_pred HHHHH
Q 012368 445 ELDQA 449 (465)
Q Consensus 445 ~i~~~ 449 (465)
|||++
T Consensus 367 dv~~l 371 (371)
T PF00266_consen 367 DVDRL 371 (371)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-19 Score=176.24 Aligned_cols=318 Identities=16% Similarity=0.111 Sum_probs=192.9
Q ss_pred CCHHHHHHHHHHH-hhcccccC--C--CCCHHHHHHHH----HHHhhcCCCeEE-ecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQA-NVLTHVSN--M--YYSIPQIELAK----RLVACSFADRVF-FSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~-~~~~~~~~--~--~~~~~~~~la~----~l~~~~~~~~v~-~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
-||.|++|+...+ .+++.++. . ..++...+|++ +++++++.+.++ +++||+.|+..++....
T Consensus 40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~-------- 111 (416)
T PRK13034 40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALL-------- 111 (416)
T ss_pred CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhc--------
Confidence 3899999999985 65433211 1 12466788888 999999977774 57999999999998764
Q ss_pred CCCCCCceEEEEcCCcccCcccccccc-CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE-cccCCCCCcc
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV-EPIQGEGGIY 262 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~-ep~~~~~G~~ 262 (465)
.++|+|++...+|.+......... ....+........+. ....|+++++++++..++++|++ +++++. .
T Consensus 112 ---~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~d~~~le~~l~~~~~klVi~~~~~~g~---~ 182 (416)
T PRK13034 112 ---KPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL---TGLIDYDEVEELAKEHKPKLIIAGFSAYPR---E 182 (416)
T ss_pred ---CCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccc---cCCcCHHHHHHHHhhcCCeEEEECCCcccc---c
Confidence 268888888877655222111110 000000000000000 01148999999886434667777 455443 2
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCH-HHHhhccCC
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTE-KVASAINYG 339 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~-~i~~~~~~~ 339 (465)
.+ +++|.++|++||++||+|++|+ +|..+.+......+ ..|++ +++|+++|+. .|++++++ ++.+.++..
T Consensus 183 ~d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~-GG~v~~~~~~~~~~~~~~ 255 (416)
T PRK13034 183 LD----FARFREIADEVGALLMVDMAHI-AGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR-GGMILTNDEEIAKKINSA 255 (416)
T ss_pred cC----HHHHHHHHHHcCCEEEEeCccc-ccCcccCCCCCCCC-CceEEEEeCcccCCCCC-CeEEEECcHHHHHHHHhh
Confidence 23 8899999999999999999986 44444321111111 25665 5679996533 36666654 444444432
Q ss_pred CCcCC-CCChHHHHHH-HHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHH
Q 012368 340 DHGST-FAGSPLVCNA-AIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATP 412 (465)
Q Consensus 340 ~~~~t-~~~~~~~~~a-a~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~ 412 (465)
...+. -+..+...++ +.+.++.+.. +++.+++.++.++|++.|.+. .++.... .+...+..+.+. .....
T Consensus 256 ~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~--G~~~~~~-~~~t~i~~v~~~~~~~~~~~ 332 (416)
T PRK13034 256 VFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER--GYDLVSG-GTDNHLLLVDLRPKGLSGKD 332 (416)
T ss_pred cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc--CCEeccC-CCCCcEEEEEcCCCCCCHHH
Confidence 22221 1122333333 3344444422 345788889999999888764 3332211 123455556552 23355
Q ss_pred HHHHHHHCCceEeecC---------CCCEEEEecCC----CCcHHHHHHHHHHHHHHHHH
Q 012368 413 VVDACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~----~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.+.|.++||++.... ....+|++++. .++++|++++++.|.+++..
T Consensus 333 ~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 333 AEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred HHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 6688888999997411 12469998877 77899999999999988764
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=182.07 Aligned_cols=297 Identities=14% Similarity=0.155 Sum_probs=187.2
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+|+++|+++.+.+.+++++||++|+..++..+.. ++|.|++.++.|.+..........
T Consensus 70 Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~~-----------~GD~Vl~~~~~Y~~~~~~~~~~~~- 137 (418)
T PLN02242 70 YSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCS-----------SGGHVVASNTLYGGTHALLAHFLP- 137 (418)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC-----------CCCEEEEcCCcHHHHHHHHHHhhh-
Confidence 45567888999999999999988999999999999999987652 689999999988655322111000
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..|+++++++++++++++|+++..+++.|.+.+ +++|.++|++||++||+||+|+.+.
T Consensus 138 -------~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~ 206 (418)
T PLN02242 138 -------RKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMV 206 (418)
T ss_pred -------hccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccC
Confidence 00112234455568999999997544677777766666666654 9999999999999999999997542
Q ss_pred CCCccccccccCCcccEEEecccCCC-ccc-eeeEEeCHHHHhhccCCCCc--CCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 294 RTGYLWAHEHYGIFPDIMTLAKPLAG-GLP-IGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~sK~lg~-G~~-iG~v~~~~~i~~~~~~~~~~--~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
... ..++...-+.++||.+++ |.+ .|++++++++++.+...... ..++..+..+.|++.++..-.-+...+
T Consensus 207 -~~~----~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~tl~~r~~ 281 (418)
T PLN02242 207 -LSP----ARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMK 281 (418)
T ss_pred -CCH----HHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCCcHHHHHH
Confidence 211 122332333478899986 666 59999999988877643221 223334445555555443211133455
Q ss_pred HHHHHHHHHHHHHHHHHH--cCCCce----------ee---eccceEEEEEecC--ChHHHHHHHH------HCCce---
Q 012368 370 SVSKKGHYFKETLKQKLA--RNPHVK----------DV---RGLGLIIGIEFDV--SATPVVDACR------DSGLL--- 423 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~--~~~~~~----------~~---~~~g~~~~i~~~~--~~~~~~~~l~------~~Gv~--- 423 (465)
+.+++.+++.+.|++... .+|... .. .+.|.++.|++.. .+.+|++.|. ..++.
T Consensus 282 ~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~~~~~~~~~~~slG~ 361 (418)
T PLN02242 282 EHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSLGY 361 (418)
T ss_pred HHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHhhcccccceeeecCCC
Confidence 667777777777766410 012100 11 3678899999842 2335555554 11111
Q ss_pred ----E-eec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 424 ----V-LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 424 ----v-~~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+ .|. | ..+.+|+++.+.. +.+.+++-|+++|+.++
T Consensus 362 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~---~~~dli~dl~~al~~~~ 417 (418)
T PLN02242 362 YETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTG---TLEQRWSQFEKALSAMK 417 (418)
T ss_pred CCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCC---CHHHHHHHHHHHHHHhh
Confidence 1 010 0 1256899866531 36667788888887664
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=180.07 Aligned_cols=315 Identities=17% Similarity=0.105 Sum_probs=200.7
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
-+++|++|+.+.... +. .....+...+++++++++++ .+.+++++||+++++.++.... .+++
T Consensus 20 ~~~~V~~a~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-----------~~Gd 85 (401)
T PLN02409 20 IPERVLRAMNRPNED--HR-SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-----------SPGD 85 (401)
T ss_pred CCHHHHHHhcCCCCC--CC-CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-----------CCCC
Confidence 446666665443211 11 11122346778888888876 3468999999999998887543 2689
Q ss_pred eEEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHH
Q 012368 192 EFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKE 267 (465)
Q Consensus 192 ~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~ 267 (465)
+|++.+++|++.....+ ...+.... ..+...+.. .|+++++++++. +++++|++..+.+.+|.+.+
T Consensus 86 ~Vlv~~~~~~~~~~~~~~~~~g~~v~---~v~~~~~~~----~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~--- 155 (401)
T PLN02409 86 KVVSFRIGQFSLLWIDQMQRLNFDVD---VVESPWGQG----ADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND--- 155 (401)
T ss_pred EEEEeCCCchhHHHHHHHHHcCCceE---EEECCCCCC----CCHHHHHHHHhhCcCCCccEEEEEeecccccccCC---
Confidence 99999988876542111 11111110 001111100 278999999974 25777777776666777765
Q ss_pred HHHHHHHH--HHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccCCCC--
Q 012368 268 FLQFLRDA--CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYGDH-- 341 (465)
Q Consensus 268 ~l~~l~~l--~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~~~-- 341 (465)
+++|.++ |+++|+++|+|++++ +|. .....+ ....|+++ .+|+++++.++|++++++++++.+.+...
T Consensus 156 -~~~i~~l~~~~~~g~~~vvD~v~s-~g~--~~id~~--~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~ 229 (401)
T PLN02409 156 -LAGVRKLLDCAQHPALLLVDGVSS-IGA--LDFRMD--EWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPR 229 (401)
T ss_pred -HHHHHHHHhhhccCcEEEEEcccc-cCC--cccccc--ccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCC
Confidence 7777777 999999999999987 432 112222 23456664 46999876789999999998877653210
Q ss_pred -------------cC---CCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCcee--eeccce
Q 012368 342 -------------GS---TFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKD--VRGLGL 400 (465)
Q Consensus 342 -------------~~---t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g~ 400 (465)
.+ .++.+...+.+..++++.+.+ +...++.+++.+++++.|.++ ....... ....+.
T Consensus 230 ~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~--g~~~~~~~~~~~s~~ 307 (401)
T PLN02409 230 VFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW--GLKLCTKKPEWRSDT 307 (401)
T ss_pred eecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhcccc
Confidence 11 234555667778888887643 345556666666666666543 2211111 111234
Q ss_pred EEEEEec--CChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 401 IIGIEFD--VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 401 ~~~i~~~--~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.++.+. .+..++.+.|. +.|+.+..+. .+..+|++.....+++++..++++|++++.++.
T Consensus 308 v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 308 VTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4556552 45567887776 5699988653 257899999889999999999999999998754
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=180.08 Aligned_cols=312 Identities=16% Similarity=0.155 Sum_probs=192.0
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhc-ccccC-CC-----CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN-MY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEA 170 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~ 170 (465)
|||..+. +..++.|.+++.+.+... ..... .. ......++++++++.++ .+.|+|++|+++|+..
T Consensus 2 Yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~ 75 (364)
T PLN02651 2 YLDMQAT------TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNL 75 (364)
T ss_pred cccCcCC------CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHH
Confidence 5665543 346789999998877542 11111 01 12225677888888887 5689999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCC
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPG 245 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~ 245 (465)
++..+..... .++++|++.+..|+........+. ... ..+..+|. -|++++++++++
T Consensus 76 ~l~~~~~~~~-------~~g~~vl~~~~~h~s~~~~~~~~~-~~g---------~~v~~v~~~~~~~~d~~~l~~~i~~- 137 (364)
T PLN02651 76 AIKGVMHFYK-------DKKKHVITTQTEHKCVLDSCRHLQ-QEG---------FEVTYLPVKSDGLVDLDELAAAIRP- 137 (364)
T ss_pred HHHHHHHhcc-------CCCCEEEEcccccHHHHHHHHHHH-hcC---------CEEEEEccCCCCcCCHHHHHHhcCC-
Confidence 9887643211 146788887766654332221111 000 11111221 278999999975
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccce
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPI 323 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~i 323 (465)
++++|++..+++..|.+.+ +++|.++|++||+++++|.+|+ +|.. . ++...+.+|++++| |. +|+..+
T Consensus 138 ~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~--~--~~~~~~~~D~~~~s~hK~-~gp~G~ 207 (364)
T PLN02651 138 DTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI--P--VDVDDLGVDLMSISGHKI-YGPKGV 207 (364)
T ss_pred CcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc--c--cCcccCCCCEEEechhhh-CCCCce
Confidence 4677788777777888776 9999999999999999999997 3321 1 22223446888776 84 545678
Q ss_pred eeEEeCHHHHhhccCCCCc-------CCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 324 GAALVTEKVASAINYGDHG-------STFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~-------~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
|+++++++..+.+.+...+ ...+.|..++.+..++|+.+.+ +...++.+++.+++++.|++.+........
T Consensus 208 g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~ 287 (364)
T PLN02651 208 GALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGP 287 (364)
T ss_pred EEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence 9999998776666543211 1123456667777788887643 233444444555555544432111111111
Q ss_pred --e-eccceEEEEEec-CChHHHHHHHHHCCceEeecC----------------------CCCEEEEecCCCCcHHHHH
Q 012368 395 --V-RGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG----------------------KGNVVRLVPPLIISEQELD 447 (465)
Q Consensus 395 --~-~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~----------------------~~~~lRi~~~~~~t~e~i~ 447 (465)
. .....++.+.++ .+..++.+.|.+ |.+..+. ..+.+|++++..+|++|||
T Consensus 288 ~~~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 288 RDPEKRYPGTLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CCcccCcCCEEEEEeCCCCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 1 112445666663 466778888854 6664331 0258999999999999985
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=163.81 Aligned_cols=282 Identities=19% Similarity=0.155 Sum_probs=182.9
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCC
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN 234 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (465)
++++++++|++.|++..+-.+. +|++..+++.|.|.|+.......+|.......+ .-..+... +
T Consensus 146 P~~~Vv~~G~T~ane~l~fcLa-----------dpgdafLvPtPyY~gfdrdl~~rTgveivpv~c-~Ss~~f~i----t 209 (471)
T KOG0256|consen 146 PERVVVTNGATSANETLMFCLA-----------DPGDAFLVPTPYYPGFDRDLRWRTGVEIVPVHC-SSSNGFQI----T 209 (471)
T ss_pred ccceEEecccchhhHHHHHHhc-----------CCCceeeecCCCCCcccccceeccCceEEEEEe-ecCCCccc----c
Confidence 7899999999999998776655 379999999999999976554443322111000 00011111 5
Q ss_pred HHHHHhhcC-----CCCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCccccccc---
Q 012368 235 IEATRKLIQ-----PGKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEH--- 303 (465)
Q Consensus 235 ~~~le~~l~-----~~~~-a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~gr~g~~~~~~~--- 303 (465)
.++||++++ +.++ .++|++|.||-|.+ .+++.|..+..+|.++++.||+||||++ |+..+-....+.
T Consensus 210 v~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~--~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~ 287 (471)
T KOG0256|consen 210 VEALEAALNQARKLGLKVKGVLITNPSNPLGTT--LSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKD 287 (471)
T ss_pred HHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCc--cCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhc
Confidence 788887775 2344 46677887777644 4889999999999999999999999998 433321111111
Q ss_pred cCCcccEE----EecccCCC-ccceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-Cc----hHHHHHH
Q 012368 304 YGIFPDIM----TLAKPLAG-GLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NP----AFLASVS 372 (465)
Q Consensus 304 ~~~~pdi~----t~sK~lg~-G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~----~~~~~~~ 372 (465)
....+|.+ ++||-+|- |+|+|.+... +++...... ...-...++..|.-....|..-+ .+ +..++++
T Consensus 288 ~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~k--mssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~ 365 (471)
T KOG0256|consen 288 PHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATK--MSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLR 365 (471)
T ss_pred cccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHH--HhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 11245533 78999994 9999999875 566655542 22223456777777666665310 01 2233444
Q ss_pred HHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--------CChHHHHHHHHHC-CceEeecC-----CCCEEEEecC
Q 012368 373 KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--------VSATPVVDACRDS-GLLVLTAG-----KGNVVRLVPP 438 (465)
Q Consensus 373 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--------~~~~~~~~~l~~~-Gv~v~~~~-----~~~~lRi~~~ 438 (465)
...+++.+.|+++ ++.--..+.|+|+|+++. ....++++.++++ ++.+.|+. .++|+|+.+.
T Consensus 366 ~rh~~~~~gLk~l----gI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFA 441 (471)
T KOG0256|consen 366 IRHRYIVEGLKAL----GIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFA 441 (471)
T ss_pred HHHHHHHhhHHhc----CCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEec
Confidence 4444555555443 433345678999999983 1234577788877 99999874 2589999765
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhh
Q 012368 439 LIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 439 ~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
...++.++-+++||+.++.+..
T Consensus 442 -n~~~~t~~~am~Ri~~~~~~~~ 463 (471)
T KOG0256|consen 442 -NMSEETLEVAMRRLKQFLDSQV 463 (471)
T ss_pred -cCCHHHHHHHHHHHHHHHHhhh
Confidence 4466666669999999887543
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=176.04 Aligned_cols=287 Identities=18% Similarity=0.174 Sum_probs=187.9
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+|+++++++.+.+.+++++||++|+..+++.+.. ++++|++..+.|++.........
T Consensus 34 y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~-----------~gd~Vl~~~~~y~~~~~~~~~~~-- 100 (369)
T cd00614 34 YSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLK-----------AGDHVVASDDLYGGTYRLFERLL-- 100 (369)
T ss_pred eECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcC-----------CCCEEEECCCCcchHHHHHHHHH--
Confidence 45567788999999999999888889999999999999987652 68899999999877542211110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++.+|++++++++++ ++++|++|..+++.|.+.+ +++|.++|++||+++|+|+++...
T Consensus 101 -------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~- 167 (369)
T cd00614 101 -------PKLGIEVTFVDPDDPEALEAAIKP-ETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATP- 167 (369)
T ss_pred -------hhcCeEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcch-
Confidence 011134556777789999999975 5778888887777777665 999999999999999999998632
Q ss_pred CCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCH-HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
.. ........|++ +++|.++| | .+.|++++++ ++++.+...........+|+.+++++..|+.+ +...
T Consensus 168 ~~-----~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl--~~r~ 240 (369)
T cd00614 168 YL-----QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL--PLRM 240 (369)
T ss_pred hc-----CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH--HHHH
Confidence 11 11122345666 67899986 5 7899999987 88777754322233456777776665555422 2345
Q ss_pred HHHHHHHHHHHHHHHHHHH----cCCCce----------eeeccceEEEEEecCChHHHHHHHHHCCceE----------
Q 012368 369 ASVSKKGHYFKETLKQKLA----RNPHVK----------DVRGLGLIIGIEFDVSATPVVDACRDSGLLV---------- 424 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~----~~~~~~----------~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v---------- 424 (465)
++..++..++.+.|++... .+|... ...+.|.++.+++.....+..+.+..-.++.
T Consensus 241 ~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~s 320 (369)
T cd00614 241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVES 320 (369)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCce
Confidence 5666666666666554210 012110 1235688999998433333333332223321
Q ss_pred ---eec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 425 ---LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 425 ---~~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.|. | .++.+|+++.+ |+.+.+++.|++++
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al 368 (369)
T cd00614 321 LVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL 368 (369)
T ss_pred eeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 010 1 13579998776 56777777777765
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-18 Score=166.11 Aligned_cols=322 Identities=13% Similarity=0.072 Sum_probs=188.0
Q ss_pred EEEecccCcccccCCC--CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGH--GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~ 176 (465)
.+|...+.. ..||- .+++|++++.+.++.+ ....+...+++++++++++.+++++++|+++|+.++++.+.
T Consensus 9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~ 81 (363)
T TIGR01437 9 KVINASGKM--TILGVSTVSDEVADAQKRGAQNY-----FEIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVI 81 (363)
T ss_pred eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHh
Confidence 444444433 34554 5889999999987542 12335578899999999998899999999999999999775
Q ss_pred HHhhh------cCCCCCCCCceEEEEcCCcccCc---cccccccC-CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC
Q 012368 177 KFQRH------SNPDSKEPATEFVSFTNSFHGRT---MGALALTS-KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 177 ~~t~~------~~~~~~~~~~~ii~~~~~yhg~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (465)
.- +. .... .-+++.||+..|.|..+. ...+.+.+ .+.+. .. . ...|++++++++++++
T Consensus 82 ~~-Gd~~~~~~~~~s-~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v----~~--~----~~~d~~~le~ai~~~t 149 (363)
T TIGR01437 82 TR-GNRYLVENLHDS-KIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEA----GY--A----NECSAEQLEAAITEKT 149 (363)
T ss_pred cC-CCcchhhccccc-ccccceEEEECccchhcCCchHHHHHhcCCeEEEE----cC--C----CCCCHHHHHHhcChhc
Confidence 21 00 0000 002347888887775442 11112222 11111 10 0 1138999999998654
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCcccee
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIG 324 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG 324 (465)
.++++++..++..|.+.+ +++|.++|++||+++|+|++|. . ... ....++ .|++++| |+++ |++.|
T Consensus 150 ~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~~~--~~~~~g--~D~~~~S~~K~l~-gp~~G 217 (363)
T TIGR01437 150 AAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--DLQ--KYYRLG--ADLVIYSGAKAIE-GPTSG 217 (363)
T ss_pred eEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--chH--HHHHcC--CCEEEEeCCcccC-CCceE
Confidence 444434433333454444 7899999999999999999996 2 111 011123 4777654 9885 55699
Q ss_pred eEEeCHHHHhhccCCCCc--CCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceee---ec
Q 012368 325 AALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDV---RG 397 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~--~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~ 397 (465)
++++++++++.+....++ ..+......+++..++++.+.+ .+..+...++.+++++.|.+ .+.+... ..
T Consensus 218 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~----i~g~~~~~~~~~ 293 (363)
T TIGR01437 218 LVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNT----LKGVSASIVQDE 293 (363)
T ss_pred EEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhc----CCCeEEEEecCC
Confidence 999998888766432211 1111112234444445554422 23344444444455555544 3332221 11
Q ss_pred cc-----eEEEEEe---cCChHHHHHHHHHCC--ceEeec-CCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 398 LG-----LIIGIEF---DVSATPVVDACRDSG--LLVLTA-GKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 398 ~g-----~~~~i~~---~~~~~~~~~~l~~~G--v~v~~~-~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.+ ..+.++. +.+..++.+.|.++| |.+++. ...+.+|+.+. +.+++|++.++++|++.
T Consensus 294 ~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~-~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 294 AGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPR-SVTGGQLDIIVERIREI 362 (363)
T ss_pred CCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEee-cCCHHHHHHHHHHHHHh
Confidence 11 1122332 245788999998877 555431 12367888877 46799999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=162.56 Aligned_cols=324 Identities=19% Similarity=0.208 Sum_probs=198.7
Q ss_pred EecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhh
Q 012368 101 LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 101 lD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
+||.|..++ | ++|++++|+.++-.. ....++.++...++++++++.++.+.++|++|||.||..++....+
T Consensus 2 ~~f~SDn~~---g-~~~~m~eam~~a~~~--~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~--- 72 (342)
T COG2008 2 IDFRSDNVA---G-PTPEMREALAAANAV--GDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQ--- 72 (342)
T ss_pred CccccCccC---C-CCHHHHHHHHhcccc--CCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcC---
Confidence 577776553 3 789999999886532 1223345666889999999999999999999999999999997662
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC-CCCCC--CceEeeCCCHHHHHhhcCCC-----CeEEEEE
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF-EPVMP--GVNFVEYGNIEATRKLIQPG-----KTAAVFV 252 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~le~~l~~~-----~~a~vi~ 252 (465)
++..|| ..+.-|-++...-. ...+.... .+..+ +.. -++++++..+..+ .+..++.
T Consensus 73 --------~~~~vi-~~~~aHi~~~E~Ga---~~~~~~~~~~~~~~g~~Gk----lt~e~v~~~i~~~d~~~~~~~~~~~ 136 (342)
T COG2008 73 --------PGESVI-CHETAHIYTDECGA---PEFFGGGQKLPIVPGADGK----LTPEDVEAAIRPDDIHHAPTPLAVL 136 (342)
T ss_pred --------CCCeEE-EeccccceecccCc---HHHHcCCceeccCCCCCCC----cCHHHHHHhhcCCCcccCCCceEEE
Confidence 444444 44555655532211 00000000 01111 111 1789999987622 3445555
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCccccccccCCcccEEEecccCCCccceeeEE-eC
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAAL-VT 329 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~-~~ 329 (465)
+....++|. +++.++|++|.++|++||+.|+.|-+--. .-..| .....+....|+++|+-+-++|+|+|+++ ++
T Consensus 137 e~~~te~Gt-Vy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn 213 (342)
T COG2008 137 ENTATEGGT-VYPLDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFCLTKGGGAPVGAIVFGN 213 (342)
T ss_pred eeccCCCce-ecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEecccCCcceeeeEEEcC
Confidence 554447775 57899999999999999999999975211 10111 12222333568887765556677888876 57
Q ss_pred HHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec
Q 012368 330 EKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD 407 (465)
Q Consensus 330 ~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~ 407 (465)
+++++.+... ..++-+.-..+-.+++..+|+.---.....+.+++..+|.+.+... .+.....+...+++.+.++
T Consensus 214 ~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~---~G~~~~~~~~tN~vf~~l~ 290 (342)
T COG2008 214 RDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAK---PGVKLAFPVETNMVFVRLP 290 (342)
T ss_pred HHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhc---CCceeccCCcccEEEEECC
Confidence 8888776432 3455565566666666666652100111122233355555555432 1222233357788888774
Q ss_pred CC---hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 408 VS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 408 ~~---~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.. .......+...|+++.+.+ ..+||..++.++++++++++..+++++
T Consensus 291 ~~~i~~l~~~~~~~~~~~~~~~~~--~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 291 ESAIEALRLAGALFYRGVLIGAHG--EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred hHHHHHHHhhchhheeeeeccCCC--ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 21 2223334445566665433 479999999999999999999988754
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=173.34 Aligned_cols=325 Identities=18% Similarity=0.156 Sum_probs=186.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHh-hcccc---cCCC-CCHHH---HH-HHHHHHhhcCCCe-EEecCCHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHV---SNMY-YSIPQ---IE-LAKRLVACSFADR-VFFSNTGTEA 167 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~-~~~~~---~~~~-~~~~~---~~-la~~l~~~~~~~~-v~~~~sG~eA 167 (465)
+++|.+..+-. + -+|.|++++.+.+. +...+ ...+ ..+.. ++ .++.+++.++.+. .++.+||++|
T Consensus 19 ~~~~~~~~~~~--~---~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a 93 (402)
T cd00378 19 RETLELIASEN--F---TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQA 93 (402)
T ss_pred HhCeeeeccCC--c---CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHH
Confidence 34566654422 2 37999999987652 32111 1111 22222 22 3345667777332 2344578999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc----cccCCCCcCCCCCCCCCCc-eEeeCCCHHHHHhhc
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL----ALTSKEHYRSPFEPVMPGV-NFVEYGNIEATRKLI 242 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~le~~l 242 (465)
+..+++.... ++++|++.++.|.++..... ...+.... ..+...+. .. .-|++++++++
T Consensus 94 ~~~~l~~l~~-----------~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~--~id~~~l~~~i 157 (402)
T cd00378 94 NLAVYFALLE-----------PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFE---SVPYGVDPETG--LIDYDALEKMA 157 (402)
T ss_pred HHHHHHHhcC-----------CCCEEEEecCccCccccccccccccccceeEE---EecCCcCcccC--CcCHHHHHHHH
Confidence 9998887642 68899999999976643311 11111000 00110100 00 12899999998
Q ss_pred CCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCCCCCCc-cccccccCCcccEE--EecccC
Q 012368 243 QPGKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGY-LWAHEHYGIFPDIM--TLAKPL 317 (465)
Q Consensus 243 ~~~~~a~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~gr~g~-~~~~~~~~~~pdi~--t~sK~l 317 (465)
...++.++++ .|+++ ...+ +++|.++|++||+++|+||+| .|+...|. ..... ..|++ +++|++
T Consensus 158 ~~~~~~~v~~~~~~~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~----~~dv~~~s~sK~l 226 (402)
T cd00378 158 LEFKPKLIVAGASAYP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP----GADVVTTTTHKTL 226 (402)
T ss_pred HhCCCCEEEecCcccC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc----CCcEEEeccccCC
Confidence 6334445554 55432 2333 889999999999999999996 44422232 11111 24554 678999
Q ss_pred CCccceeeEEeCH-HHHhhccCCCCcCCCCCh-HHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 318 AGGLPIGAALVTE-KVASAINYGDHGSTFAGS-PLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 318 g~G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~-~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
+|+|+|++++++ ++++.+........++.+ +..++++..++..... +++.++++++.+++.+.|.+ ++..
T Consensus 227 -~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~ 301 (402)
T cd00378 227 -RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKE----RGFK 301 (402)
T ss_pred -CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh----CCCe
Confidence 568999999976 888777532222222222 2333333334443322 34455566666666665554 3321
Q ss_pred ee-eeccceEEEEEec---CChHHHHHHHHHCCceEeec----C-----CCCEEEEecCCC----CcHHHHHHHHHHHHH
Q 012368 393 KD-VRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTA----G-----KGNVVRLVPPLI----ISEQELDQAVEILCK 455 (465)
Q Consensus 393 ~~-~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~----~-----~~~~lRi~~~~~----~t~e~i~~~l~~l~~ 455 (465)
.. .+..+.++|+.++ .....+.+.|.++||.+.+. . ....+|++++.. ++++|++++++.|++
T Consensus 302 ~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~ 381 (402)
T cd00378 302 VVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIAR 381 (402)
T ss_pred EeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHH
Confidence 11 1234677778774 23456777788889999632 1 125789977653 479999999999999
Q ss_pred HHHH
Q 012368 456 TLPV 459 (465)
Q Consensus 456 ~l~~ 459 (465)
++++
T Consensus 382 ~~~~ 385 (402)
T cd00378 382 ALKD 385 (402)
T ss_pred HHhc
Confidence 8764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=168.02 Aligned_cols=326 Identities=16% Similarity=0.147 Sum_probs=190.8
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHh--h-cccccCCCC------CHHHHHHHHHHHhhcC--CCeEEecCCHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQAN--V-LTHVSNMYY------SIPQIELAKRLVACSF--ADRVFFSNTGTE 166 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~--~-~~~~~~~~~------~~~~~~la~~l~~~~~--~~~v~~~~sG~e 166 (465)
+.|+|..+. +..++.+.+++.+.+. . ......... .+...++++++++.++ .+.|++++||++
T Consensus 4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~ 77 (404)
T PRK14012 4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE 77 (404)
T ss_pred eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence 468886653 3477899999988775 2 111111000 1235677888998888 467999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP 244 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 244 (465)
|+..+++.+..+.. .+++.|++.++.|+........+ .+... .+.+..++.. .|+++|++++++
T Consensus 78 al~~~l~~l~~~~~-------~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~---~~v~~~~~g~----~d~~~l~~~i~~ 143 (404)
T PRK14012 78 SDNLAIKGAAHFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGFEV---TYLDPQSNGI----IDLEKLEAAMRD 143 (404)
T ss_pred HHHHHHHHHHHhhc-------CCCCEEEEecCccHHHHHHHHHHHhCCCEE---EEEccCCCCc----CCHHHHHHhcCC
Confidence 99999887643211 15788888888775543322111 11110 0011111110 288999999975
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccc
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLP 322 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~ 322 (465)
++++|++..+++.+|.+.+ +++|.++|+++|+++|+|++++ +|... .+.....+|++++| |.+|. .+
T Consensus 144 -~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~----~~~~~~~~D~~~~s~~K~~gp-~g 212 (404)
T PRK14012 144 -DTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP----IDLSKLKVDLMSFSAHKIYGP-KG 212 (404)
T ss_pred -CCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCcccCCCCEEEEehhhccCC-Cc
Confidence 4567777777777777765 8999999999999999999986 43221 11223457888877 96653 36
Q ss_pred eeeEEeCHHHHhhccCCCCcC-------CCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCce
Q 012368 323 IGAALVTEKVASAINYGDHGS-------TFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVK 393 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~-------t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 393 (465)
+|+++++++....+.+...+. ....+.....+..++++.+.. +...++.+++.+++.+.| ..++.+.
T Consensus 213 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L----~~~~~i~ 288 (404)
T PRK14012 213 IGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGI----KDIEEVY 288 (404)
T ss_pred eEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----hcCCCEE
Confidence 888888776443343311111 111233333333355554322 223344444444444444 4444222
Q ss_pred ee-----eccce-EEEEEecCChHHHHHHHHHCCceEeec-----------------C-----CCCEEEEecCCCCcHHH
Q 012368 394 DV-----RGLGL-IIGIEFDVSATPVVDACRDSGLLVLTA-----------------G-----KGNVVRLVPPLIISEQE 445 (465)
Q Consensus 394 ~~-----~~~g~-~~~i~~~~~~~~~~~~l~~~Gv~v~~~-----------------~-----~~~~lRi~~~~~~t~e~ 445 (465)
.. +..+. .+++.+ .+..++...|. ++.+..+ + ..+.+|++++...|++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~d 365 (404)
T PRK14012 289 LNGDLEQRVPGNLNVSFNY-VEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 365 (404)
T ss_pred EeCCccccCCCEEEEEEeC-cCHHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHH
Confidence 11 11122 233332 23345666654 3333221 0 12679999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 012368 446 LDQAVEILCKTLPVLD 461 (465)
Q Consensus 446 i~~~l~~l~~~l~~~~ 461 (465)
++++++.|+++++.++
T Consensus 366 vd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 366 IDYAIELVRKSIGKLR 381 (404)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987763
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=170.71 Aligned_cols=335 Identities=14% Similarity=0.115 Sum_probs=196.9
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a 175 (465)
-|..||||.+-.++ ..+.++..+++..... .+..+....+|++.++++++.+.+++++||++|+.+++++.
T Consensus 18 ~~~v~iDlltds~t-------~ams~~~~~a~~~gd~--~Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al 88 (431)
T cd00617 18 SEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDE--AYAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSIL 88 (431)
T ss_pred CCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCC--ccCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHh
Confidence 46678999886553 2344555555543222 22334447799999999999999999999999999998866
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC---CCHHHHHhhcCCC---CeEE
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---GNIEATRKLIQPG---KTAA 249 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~---~~a~ 249 (465)
.. ++|.| ..+++|..+...+...++.+.+...-....+. ...|+ -|+++|+++++++ .+++
T Consensus 89 ~~-----------pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~-~~~pf~gniD~e~Le~~I~~~~~~~~~~ 155 (431)
T cd00617 89 LK-----------PGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQ-ELIPFKGNIDVAKLEKLIDEVGAENIPY 155 (431)
T ss_pred CC-----------CCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccc-cccCCCCCcCHHHHHHHhCcccCCCccE
Confidence 42 57765 57777766654444444444322110000000 01122 2899999999843 3555
Q ss_pred EEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----C------CCCCcccc---ccccCCcccEEEec-
Q 012368 250 VFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----L------GRTGYLWA---HEHYGIFPDIMTLA- 314 (465)
Q Consensus 250 vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g----~------gr~g~~~~---~~~~~~~pdi~t~s- 314 (465)
|++ .|+|+.+|. +.+.+.+++|+++|++||++||.|+++.- | |+.+.... .+.+. .-|..++|
T Consensus 156 I~v~~p~N~~gG~-~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s-~sd~~~mS~ 233 (431)
T cd00617 156 IVLTITNNTAGGQ-PVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFS-YADGCTMSA 233 (431)
T ss_pred EEEECCcCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhc-cCCEEEEEe
Confidence 555 466666564 56899999999999999999999999541 1 11111100 00000 12334433
Q ss_pred -ccCCCccc-eeeEEeCH-HHHhhccCC----CCcCCCCC-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 012368 315 -KPLAGGLP-IGAALVTE-KVASAINYG----DHGSTFAG-SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 315 -K~lg~G~~-iG~v~~~~-~i~~~~~~~----~~~~t~~~-~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
|..+ .+ .|++++++ ++++.++.. ....++++ +...++|...+|+...+.+.+++..+..+++.+.|.+.
T Consensus 234 ~K~~~--~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~- 310 (431)
T cd00617 234 KKDGL--VNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEA- 310 (431)
T ss_pred ecCCC--CccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-
Confidence 3222 23 45888876 588777531 11223333 33333443336664323333444444445565555554
Q ss_pred HcCCCceeeeccceEEEEEecC----------ChHHHHHHHH-HCCceEeecC----------------CCCEEEEecCC
Q 012368 387 ARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACR-DSGLLVLTAG----------------KGNVVRLVPPL 439 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~-~~Gv~v~~~~----------------~~~~lRi~~~~ 439 (465)
.+|. ..+..|.+++++.+. ++.+++.+|+ +.||.+...| .-..+|+.+|-
T Consensus 311 -G~~v--~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~pr 387 (431)
T cd00617 311 -GVPI--VEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPR 387 (431)
T ss_pred -CCCc--cCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccc
Confidence 3332 223445666676531 3677886666 5678764311 01569998874
Q ss_pred -CCcHHHHHHHHHHHHHHHHHh
Q 012368 440 -IISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 440 -~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..|.++++.+.++|..++++.
T Consensus 388 r~~t~~~~~~~~~~~~~~~~~~ 409 (431)
T cd00617 388 RVYTQDHMDYVAAAVIALYERR 409 (431)
T ss_pred cccCHHHHHHHHHHHHHHHhhH
Confidence 669999999999999888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-17 Score=167.36 Aligned_cols=329 Identities=16% Similarity=0.124 Sum_probs=187.5
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHh-hccccc--CCC--CCHHHHHHH----HHHHhhcCCCeE-EecCCHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVS--NMY--YSIPQIELA----KRLVACSFADRV-FFSNTGTEA 167 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~-~~~~~~--~~~--~~~~~~~la----~~l~~~~~~~~v-~~~~sG~eA 167 (465)
+.+|++.++-.. -+|.|++|+...+. ....+. ..+ ..+....++ +++++.++.+.. ++++||++|
T Consensus 25 ~~~~~l~~~~n~-----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~a 99 (416)
T PRK00011 25 EEHIELIASENF-----VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQA 99 (416)
T ss_pred hcCeeeecccCc-----CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCchHH
Confidence 345666665332 47999999877653 211111 111 122233333 377888873322 344568999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc--cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (465)
+..+++.+. .++++|++.+++|.++..... .... ........+...+. ...|+++++++++..
T Consensus 100 l~~~l~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~---~~~d~~~l~~~i~~~ 164 (416)
T PRK00011 100 NAAVYFALL-----------KPGDTILGMDLAHGGHLTHGSPVNFSG-KLYNVVSYGVDEET---GLIDYDEVEKLALEH 164 (416)
T ss_pred HHHHHHHhc-----------CCCCEEEEeccccCCcccccccccccc-ceeeEeecCcCccc---CCcCHHHHHHHHHhc
Confidence 998888664 168899999999866432111 1111 00000011111110 013899999999643
Q ss_pred CeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccc
Q 012368 246 KTAAVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLP 322 (465)
Q Consensus 246 ~~a~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~ 322 (465)
++++|++. +++ |...+ +++|.++|++||+++|+|++|. +|..+........+ ..|++ +++|++ +|.+
T Consensus 165 ~~k~v~~~~~~~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~-~~di~~~S~~K~l-~g~~ 234 (416)
T PRK00011 165 KPKLIIAGASAY---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP-HADVVTTTTHKTL-RGPR 234 (416)
T ss_pred CCCEEEECCCcC---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-CCcEEEecCCcCC-CCCC
Confidence 45566653 333 33333 8999999999999999999975 22221110000111 24555 578998 4678
Q ss_pred eeeEEeC-HHHHhhccCCCCcCCCCC-hHHHHHHHHHHH-HHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeec
Q 012368 323 IGAALVT-EKVASAINYGDHGSTFAG-SPLVCNAAIAVL-DKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRG 397 (465)
Q Consensus 323 iG~v~~~-~~i~~~~~~~~~~~t~~~-~~~~~~aa~a~L-~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 397 (465)
.|+++++ +++++.+........++. ....+++...++ +.+.+ ++..++++++.+++++.|.++ .+.... -..
T Consensus 235 gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~ 311 (416)
T PRK00011 235 GGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER--GFRVVS-GGT 311 (416)
T ss_pred ceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeeee-cCC
Confidence 9999995 688877753322222322 222333333333 33321 445677777777777777653 221111 112
Q ss_pred cceEEEEEec-C--ChHHHHHHHHHCCceEeecC---------CCCEEEEecC----CCCcHHHHHHHHHHHHHHHHH
Q 012368 398 LGLIIGIEFD-V--SATPVVDACRDSGLLVLTAG---------KGNVVRLVPP----LIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 398 ~g~~~~i~~~-~--~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~----~~~t~e~i~~~l~~l~~~l~~ 459 (465)
...++++.++ . ...++.+.|.++||.+.... ....+|+... ..++++|++++++.|++++..
T Consensus 312 ~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 312 DNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred CCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 3466777763 2 45678888999999987321 1245888432 256899999999999998765
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=169.71 Aligned_cols=281 Identities=17% Similarity=0.092 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCC--CCCCCCceEEEEcCCcccCccccccccCC
Q 012368 140 IPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNP--DSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 140 ~~~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~~--~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
..+++++++++++++. +.++||+||++|+..++++++........ ...++++.+|+.+...|..........+.
T Consensus 38 ~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~ 117 (345)
T cd06450 38 EMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDV 117 (345)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhc
Confidence 3466777778887773 37999999999999999988743210000 00001233555555555544333222111
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCeEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAV-FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
.... .+..++. ..|+++|++++++ .++.+| ++.|.++ .|.+.+ +++|.++|++||+++|+|+
T Consensus 118 ~~~~---v~~~~~~----~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~-tG~~~~----~~~i~~~~~~~~~~l~vD~ 185 (345)
T cd06450 118 KVRL---VPVDEDG----RMDPEALEAAIDEDKAEGLNPIMVVATAGTTD-TGAIDP----LEEIADLAEKYDLWLHVDA 185 (345)
T ss_pred CeEE---eeeCCCC----CcCHHHHHHHHHHHHHCCCCcEEEEEecccCC-CCCCCC----HHHHHHHHHHhCCeEEEec
Confidence 1111 1111111 1388999998863 134444 4455444 565544 8999999999999999999
Q ss_pred cccCCCCCCccccccccCC-cccEE--EecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC
Q 012368 288 VQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364 (465)
Q Consensus 288 v~~g~gr~g~~~~~~~~~~-~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~ 364 (465)
+|.++.............. ..|.+ +++|+++++.++|+++.+ .+++.+++..+....-
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-------------------~~~~~~~l~~l~~~g~ 246 (345)
T cd06450 186 AYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-------------------ALKLWATLRRFGRDGY 246 (345)
T ss_pred hhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-------------------HHHHHHHHHHHhHHHH
Confidence 9975422111000000111 34654 467988877888887655 3333344333332111
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEecC------ChHHHHHHHHHCCceEeecC---CCCEEE
Q 012368 365 PAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFDV------SATPVVDACRDSGLLVLTAG---KGNVVR 434 (465)
Q Consensus 365 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~------~~~~~~~~l~~~Gv~v~~~~---~~~~lR 434 (465)
++..++..++.+++.+.| .+.+.+..+ ...+.++.+.+.. ...++.+.|.++|+++.+.. .+.++|
T Consensus 247 ~~~~~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lR 322 (345)
T cd06450 247 GEHIDRIVDLAKYLAELI----RADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLR 322 (345)
T ss_pred HHHHHHHHHHHHHHHHHH----hcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEE
Confidence 334444555555555544 344433222 2345566666532 34578899999976554321 236899
Q ss_pred EecCCCC-cHHHHHHHHHHHHH
Q 012368 435 LVPPLII-SEQELDQAVEILCK 455 (465)
Q Consensus 435 i~~~~~~-t~e~i~~~l~~l~~ 455 (465)
++++..+ |++|++++++.|++
T Consensus 323 is~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 323 FVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEecCCCCCHHHHHHHHHHHHh
Confidence 9998765 99999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=164.30 Aligned_cols=297 Identities=19% Similarity=0.181 Sum_probs=185.3
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCc
Q 012368 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF 200 (465)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~y 200 (465)
+++.+.+.+..+ +..+...++++.++++++.+.+++++||++|+..+++.+.. .++++|++..++|
T Consensus 3 ~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~----------~~gd~vl~~~~~~ 68 (352)
T cd00616 3 EAVEEVLDSGWL----TLGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGI----------GPGDEVIVPSFTF 68 (352)
T ss_pred HHHHHHHHcCCc----cCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCC----------CCCCEEEeCCcch
Confidence 455666554322 33456889999999999988899999999999999986631 1578999999999
Q ss_pred ccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 012368 201 HGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280 (465)
Q Consensus 201 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 280 (465)
++........+....+ .+..... ...|++++++.+++ ++++|++... .|...+ +++|.++|+++|
T Consensus 69 ~~~~~~~~~~g~~~~~----~~~~~~~---~~~d~~~l~~~i~~-~~~~v~~~~~---~G~~~~----~~~i~~l~~~~~ 133 (352)
T cd00616 69 VATANAILLLGATPVF----VDIDPDT---YNIDPELIEAAITP-RTKAIIPVHL---YGNPAD----MDAIMAIAKRHG 133 (352)
T ss_pred HHHHHHHHHcCCeEEE----EecCCCc---CCcCHHHHHHhcCc-CCeEEEEECC---CCCcCC----HHHHHHHHHHcC
Confidence 8776544333222111 1111100 01278999999864 5667766542 454444 899999999999
Q ss_pred CEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCC----C-----------
Q 012368 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG----D----------- 340 (465)
Q Consensus 281 ~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~----~----------- 340 (465)
+++|+|++|+ +|... .....+...|+.++| |.+++| +.|+++.+ +++.+.+... .
T Consensus 134 i~li~D~a~~-~g~~~---~~~~~~~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (352)
T cd00616 134 LPVIEDAAQA-LGATY---KGRKVGTFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEI 208 (352)
T ss_pred CeEEEECCCC-CCCeE---CCEEcccCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccce
Confidence 9999999997 33221 111123234666665 989544 55777775 5666554321 0
Q ss_pred CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee---ccceEEEEEec----CChHHH
Q 012368 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR---GLGLIIGIEFD----VSATPV 413 (465)
Q Consensus 341 ~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~i~~~----~~~~~~ 413 (465)
.+.++..+++.++.+...++.+ +...++.+++.+++++.|.++ .......... ....++.+.++ ....++
T Consensus 209 ~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 285 (352)
T cd00616 209 LGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADL-PGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDEL 285 (352)
T ss_pred eeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCC-CCccCCCCCCCCceeeEEEEEEECCcCCCCHHHH
Confidence 0112334566666666555533 445566666777776666542 1111111111 12334455553 356789
Q ss_pred HHHHHHCCceEeecCC--------------------------CCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 414 VDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 414 ~~~l~~~Gv~v~~~~~--------------------------~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
.+.|.++||.+..... .+.+|+.++...|++|++.++++|+
T Consensus 286 ~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 286 IEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 9999999997652110 1579999999999999999998873
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=163.74 Aligned_cols=286 Identities=14% Similarity=0.163 Sum_probs=176.4
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+..++++...+|+++|+++.+.+..++++||++|+..++.++. ++++||+.++.|++.........
T Consensus 45 ~y~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~~ll~------------~Gd~Vl~~~~~y~~t~~~~~~~~- 111 (366)
T PRK08247 45 DYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVMSLFR------------SGDELIVSSDLYGGTYRLFEEHW- 111 (366)
T ss_pred cccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHhC------------CCCEEEEecCCcCcHHHHHHHHh-
Confidence 35667888899999999999997777899999999987664221 58899999999987532211100
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
......+.+++..|++++++++++ ++++|++ .|.|+ .+ +...+++|.++|++||+++|+||+|..
T Consensus 112 --------~~~G~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP-~~----~~~dl~~I~~la~~~g~~lIvD~t~~~ 177 (366)
T PRK08247 112 --------KKWNVRFVYVNTASLKAIEQAITP-NTKAIFIETPTNP-LM----QETDIAAIAKIAKKHGLLLIVDNTFYT 177 (366)
T ss_pred --------hccCceEEEECCCCHHHHHHhccc-CceEEEEECCCCC-CC----cHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 011233455666799999999976 4556665 55544 33 345599999999999999999999842
Q ss_pred CCCCCccccccccCCcccEEEecccCCC--ccceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG--GLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t~sK~lg~--G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
. ..... . ..+...-+.++||.++| +...|+++++ +++++.+...........+|+.+..+...|+.+ +...
T Consensus 178 ~-~~~~p--~-~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl--~~r~ 251 (366)
T PRK08247 178 P-VLQRP--L-EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTL--ALRM 251 (366)
T ss_pred c-cccCc--h-hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcH--HHHH
Confidence 1 11111 1 12322233468899986 4788999986 677666643333334456777776666655432 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcee--eeccceEEEEEecCC--hHHHHHHHH----------HCCceEeec-------
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKD--VRGLGLIIGIEFDVS--ATPVVDACR----------DSGLLVLTA------- 427 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g~~~~i~~~~~--~~~~~~~l~----------~~Gv~v~~~------- 427 (465)
++.+++.+.+ .+.++++|.+.. .++.|.++.++++.. ..+|.+.|. .+.+++.|.
T Consensus 252 ~~~~~~a~~l----~~~L~~~p~v~~v~~P~~gg~~sf~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~ 327 (366)
T PRK08247 252 RQHEENAKAI----AAFLNEQPGVTDVLYPGRGGMLSFRLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADI 327 (366)
T ss_pred HHHHHHHHHH----HHHHHhCCCeeEEecCCcCcEEEEEECCHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccC
Confidence 3334444444 444555665443 445688888887421 112222221 012333332
Q ss_pred --------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 428 --------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 428 --------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
| .++.+||++.+. +.+.+++-|+++|+.
T Consensus 328 ~~~~r~~~gi~~~~~R~svGlE----~~~dl~~dl~~al~~ 364 (366)
T PRK08247 328 PEEIRIANGVCNRLLRFSVGIE----NVEDLIADLKQAFKQ 364 (366)
T ss_pred CHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHhh
Confidence 1 125789987654 566667777777654
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-17 Score=154.94 Aligned_cols=279 Identities=14% Similarity=0.091 Sum_probs=191.5
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---- 232 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 232 (465)
.+++|+|.+.+.+.+++++.. .++.|++-+.+|.+........+ +.++|-
T Consensus 126 diiit~G~t~~l~~~l~~~~N-----------~gd~vlie~~ty~~AL~s~~a~g---------------v~~ipv~md~ 179 (472)
T KOG0634|consen 126 DIIITNGNTDGLFKVLRTLIN-----------RGDHVLIEEYTYPSALQSMEALG---------------VKIIPVKMDQ 179 (472)
T ss_pred eEEEecCCchHHHHHHHHhhc-----------CCCceEEecccchHHHHhccccC---------------ceEEeccccC
Confidence 799999999999999998883 68999999999976654332222 222221
Q ss_pred --CCHHHHHhhcCC--------CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC---Cc--
Q 012368 233 --GNIEATRKLIQP--------GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT---GY-- 297 (465)
Q Consensus 233 --~d~~~le~~l~~--------~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~---g~-- 297 (465)
-++|.|++.+.. .+..++.+-|...|+.....+.+-.++|.+||++||+++|.||+|--+... +.
T Consensus 180 ~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~ 259 (472)
T KOG0634|consen 180 DGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLE 259 (472)
T ss_pred CCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCcc
Confidence 168999998862 135678888854443334558899999999999999999999998643222 10
Q ss_pred ------------------cccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHH
Q 012368 298 ------------------LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359 (465)
Q Consensus 298 ------------------~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L 359 (465)
+...+..|.+...-+|||-++.|+|+||+.+++-+++++.......|-+.+.+++....+.|
T Consensus 260 ~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l 339 (472)
T KOG0634|consen 260 LESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAML 339 (472)
T ss_pred ccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHH
Confidence 00111122223334899999999999999999988887765555566677888888888889
Q ss_pred HHhcCchHHH---HHHHHHHHHHHHHHHHHH-cCCC---ceeeeccceEEEEEec-------CC----hHHHHHHHHHCC
Q 012368 360 DKISNPAFLA---SVSKKGHYFKETLKQKLA-RNPH---VKDVRGLGLIIGIEFD-------VS----ATPVVDACRDSG 421 (465)
Q Consensus 360 ~~~~~~~~~~---~~~~~~~~l~~~l~~~~~-~~~~---~~~~~~~g~~~~i~~~-------~~----~~~~~~~l~~~G 421 (465)
+...++++++ +++......+..+...+. ..|. ...++..|+|+|++++ .. ...+...+.++|
T Consensus 340 ~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~g 419 (472)
T KOG0634|consen 340 KRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNG 419 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCC
Confidence 8876664444 444433333333333333 3342 2234566899999884 11 123556677999
Q ss_pred ceEeecCC---------CC-EEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 422 LLVLTAGK---------GN-VVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 422 v~v~~~~~---------~~-~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
|.+.++.. +. ++|++++++ +.|+++++++++..++++.-.
T Consensus 420 V~~v~G~~F~v~p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 420 VKLVCGSWFMVDPESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred eEEecCceeEEcCccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHHHhh
Confidence 99887531 23 799998876 677999999999999987543
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.6e-18 Score=151.51 Aligned_cols=327 Identities=16% Similarity=0.178 Sum_probs=209.7
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF 178 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~ 178 (465)
..+|+-|..-+. +..+.++|+.++.-... -++.++...+|+++.++.+|.|.-+|++||+..|.++++.-+.-
T Consensus 22 ~~vDLRSDTvT~----PTdeMr~am~eA~vgDd---VyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~ 94 (384)
T KOG1368|consen 22 RSVDLRSDTVTV----PTDEMRRAMAEASVGDD---VYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQ 94 (384)
T ss_pred eccccccccccC----ChHHHHHHHhhcccCcc---cccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcC
Confidence 446666654332 34567777776543211 12334557899999999999999999999999999999976631
Q ss_pred hhhcCCCCCCCCceEEEEcCC-cccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC-CC------CeEEE
Q 012368 179 QRHSNPDSKEPATEFVSFTNS-FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PG------KTAAV 250 (465)
Q Consensus 179 t~~~~~~~~~~~~~ii~~~~~-yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~------~~a~v 250 (465)
++..||+-+.+ -|-|..+.++.-+....+ +..+ .++..+ |++++|+.+. ++ .+.+|
T Consensus 95 ----------rg~eii~gd~~HI~~~E~gg~s~l~gv~~~-tv~~-e~dgtm----~ledIe~~ir~~~GD~H~p~T~LI 158 (384)
T KOG1368|consen 95 ----------RGSEIIVGDRAHIHRYEQGGISQLAGVHVR-TVKN-ENDGTM----DLEDIEAAIRVPKGDCHMPPTKLI 158 (384)
T ss_pred ----------CCceEEeccchheeehhccChhhhccceeE-eeee-CCCCee----eHHHHHHhhcCCCCCccCCCceEE
Confidence 35556554332 233333332211110000 0001 011111 7999999998 21 46889
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC-CCccccccccCCcccE--EEecccCCCccceeeE-
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR-TGYLWAHEHYGIFPDI--MTLAKPLAGGLPIGAA- 326 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr-~g~~~~~~~~~~~pdi--~t~sK~lg~G~~iG~v- 326 (465)
.+|...++.|..+.|-+|+.+|.++|++||+.|+.|-+-- |-- ...+.....+.-..|. +||||++|+ |+|-+
T Consensus 159 clENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavasgV~vk~i~~~fDSVsiCLSKglgA--PVGSVi 235 (384)
T KOG1368|consen 159 CLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVASGVPVKKICSAFDSVSICLSKGLGA--PVGSVI 235 (384)
T ss_pred EeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHcCCCHHHHHHhhhhhhhhhhccCCC--CcccEE
Confidence 9998777766677799999999999999999999997632 100 0001112222222343 479999976 66655
Q ss_pred EeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccceEEE
Q 012368 327 LVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLGLIIG 403 (465)
Q Consensus 327 ~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~ 403 (465)
++++++++..... ..++.+-.+.+.++|++.+|+. ....+.+-.++...+.+.+++. .++ ...++ ...++..
T Consensus 236 VG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~~~~-~~i--~v~v~a~etNiv~ 310 (384)
T KOG1368|consen 236 VGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYINTP-EEI--RVEVPAVETNIVN 310 (384)
T ss_pred EccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhccc-cce--eeecchhhcceee
Confidence 6788888765421 3455566667778888888873 2234555666666666666532 112 22233 4566666
Q ss_pred EEe---cCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 404 IEF---DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 404 i~~---~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+.+ ...++++++.+.+.||++.++.. ..+|+.++..+|+++++..+..+.+.+
T Consensus 311 ~~l~q~~~~~~~l~~~~~k~gi~lm~~~s-~r~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 311 MVLCQARLTAEELCKFLEKNGILLMGGAS-RRIRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred eecccccCCHHHHHHHHHHCCeEEeeccc-cceEEEEEEecCHHHHHHHHHHHHHHH
Confidence 665 25688999999999999987654 568999999999999999999995433
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-17 Score=163.81 Aligned_cols=288 Identities=14% Similarity=0.149 Sum_probs=182.0
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.++.+.++...+++++|+++.+.+.+++++||++|+..++..... ++++||+..+.|++.........
T Consensus 57 ~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~-----------~GD~Vi~~~~~y~~~~~~~~~~~- 124 (398)
T PRK08249 57 IYSRNTNPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLK-----------PGDRVVSIKDTYGGTNKIFTEFL- 124 (398)
T ss_pred cccCCCChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-----------CCCEEEEcCCchHHHHHHHHHHH-
Confidence 345677888999999999999988889999999999998876542 68999999999976432111100
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
......+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|++||+++|+|++|..+
T Consensus 125 --------~~~Gi~v~~vd~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~ 191 (398)
T PRK08249 125 --------PRMGVDVTLCETGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP 191 (398)
T ss_pred --------hhCCeEEEEcCCCCHHHHHHhcCC-CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc
Confidence 011122334455689999999975 4667777655555566655 899999999999999999998743
Q ss_pred CCCCccccccccCCcccEE--EecccCCC-ccce-eeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
. .... .....|++ +++|.++| |.++ |++++++++++.+...........+++.++.++..|+.+ +...
T Consensus 192 ~-~~~~-----l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL--~~R~ 263 (398)
T PRK08249 192 I-NQNP-----LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTL--KLRV 263 (398)
T ss_pred c-cCCc-----hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchH--HHHH
Confidence 1 1111 12234555 57799986 5554 777788888877754333334456777777766666644 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEecCCh---HHHHHHHH--HCCce--
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFDVSA---TPVVDACR--DSGLL-- 423 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~~~~---~~~~~~l~--~~Gv~-- 423 (465)
++..++...+.+.|+ .+|.+. ...|.|.++.|++.... .+|.+.|. ..++-
T Consensus 264 ~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G 339 (398)
T PRK08249 264 RQQQESAMALAKYLQ----THPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLG 339 (398)
T ss_pred HHHHHHHHHHHHHHH----cCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCC
Confidence 445555555555554 333221 12467889999984332 23333331 11221
Q ss_pred -----Ee-ec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 424 -----VL-TA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 424 -----v~-~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+. |. | .++.+|+++.+. +.+.+++-|+++|+.++
T Consensus 340 ~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~~~ 395 (398)
T PRK08249 340 AVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIE----DTEDLIADLEQAFAHLE 395 (398)
T ss_pred CCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHHhh
Confidence 11 10 1 135799987764 45566666777766544
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-18 Score=161.41 Aligned_cols=283 Identities=17% Similarity=0.200 Sum_probs=195.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012368 137 YYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 137 ~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
+..+.+.++++..+++.+.+..+.++-|..+|..-+-... .+...|+.+.--|++......+++
T Consensus 179 G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~------------~~gsLIiSDelNHaSi~~GaRLSg---- 242 (519)
T KOG1357|consen 179 GTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLL------------GKGSLIISDELNHASLITGARLSG---- 242 (519)
T ss_pred ccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcceee------------cCCcceeeccccchheeccccccC----
Confidence 3455688999999999996665555667766666555444 244566777777888766555443
Q ss_pred CCCCCCCCCCceEeeCCCHHHHHhhcC------------CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEE
Q 012368 217 RSPFEPVMPGVNFVEYGNIEATRKLIQ------------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLV 284 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~d~~~le~~l~------------~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI 284 (465)
..+..+.+||+++||++|+ +.++..|++|.+.++.|.++. |.++.+++++|.++|+
T Consensus 243 --------AtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~ 310 (519)
T KOG1357|consen 243 --------ATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLY 310 (519)
T ss_pred --------ceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEE
Confidence 3355678899999999985 234678999999999999987 8899999999999999
Q ss_pred EeccccC--CCCCCccccccccCCcc---cEE--EecccCCC-ccceeeEEeCHHHHhhccCCCCcCCC--CChHHHHHH
Q 012368 285 FDEVQCG--LGRTGYLWAHEHYGIFP---DIM--TLAKPLAG-GLPIGAALVTEKVASAINYGDHGSTF--AGSPLVCNA 354 (465)
Q Consensus 285 ~DEv~~g--~gr~g~~~~~~~~~~~p---di~--t~sK~lg~-G~~iG~v~~~~~i~~~~~~~~~~~t~--~~~~~~~~a 354 (465)
.||+++. .|++|.+ ..+.+++.| ||+ ||.|++++ | |++.+++++++.+........+ ..+|+.+..
T Consensus 311 lDEAHSiGA~g~tGrg-vce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq 386 (519)
T KOG1357|consen 311 LDEAHSIGAMGATGRG-VCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQ 386 (519)
T ss_pred eeccccccccCCCCcc-eeeccCCCchhheeecceehhhccccc---ceecCcHHHHhhhccCCCceeecccCChHHHHH
Confidence 9999985 3455543 567777643 554 78899985 4 7888999999998754333333 235555666
Q ss_pred HHHHHHHhcC-------chHHHHHHHHHHHHHHHHHHHHHcCCCcee----eeccceEEEEEecCChHHHHHHHHHCCce
Q 012368 355 AIAVLDKISN-------PAFLASVSKKGHYFKETLKQKLARNPHVKD----VRGLGLIIGIEFDVSATPVVDACRDSGLL 423 (465)
Q Consensus 355 a~a~L~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~ 423 (465)
.+.+++.+.- .+-.++++++..+++..|+.. +.+.. .+-..+++ -....-..+.+.|+++++.
T Consensus 387 ~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~----gfivyG~~dSpVvplll--~~~~k~~~f~r~~l~~nig 460 (519)
T KOG1357|consen 387 ILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM----GFIVYGNNDSPVVPLLL--YGPAKIVAFSREMLERNIG 460 (519)
T ss_pred HHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC----cEEEecCCCCCcceeee--cCcccccHHHHHHHhcCce
Confidence 6667776632 234566777777777766553 21111 11111111 1123445688899998877
Q ss_pred EeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 424 VLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 424 v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+...+. ....|++.+..++.|+++.+++.+.+.=
T Consensus 461 vVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 461 VVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred EEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 665443 2346999999999999999999987653
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=167.27 Aligned_cols=283 Identities=15% Similarity=0.132 Sum_probs=177.2
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+..++++...+|+++++++++.+..++++||+.|+..++..... ++++||+..+.|.+..........
T Consensus 54 ~y~r~~~pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~~-----------~Gd~Vv~~~~~y~~~~~~~~~~~~ 122 (386)
T PRK06767 54 IYSRLGNPTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLK-----------AGDHIICSNGLYGCTYGFLEVLEE 122 (386)
T ss_pred cccCCCCcchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCcHHHHHHHHHHHHh
Confidence 345667777899999999999977888889999999888765541 688999988877544322111110
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
.....+.+++..|++++++++++ ++++|++|..++..|.+.+ +++|.++|+++|+++|+||+|...
T Consensus 123 ---------~~gi~~~~~~~~d~~~l~~~i~~-~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~~ 188 (386)
T PRK06767 123 ---------KFMITHSFCDMETEADIENKIRP-NTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCSP 188 (386)
T ss_pred ---------hcCeEEEEeCCCCHHHHHHhhCc-CceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 00112334445689999999975 4566666665555666655 899999999999999999998521
Q ss_pred CCCCccccccccCCcccEE--EecccCCC-ccce-eeEEeCHHHHhhccCC---CCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTEKVASAINYG---DHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~~i~~~~~~~---~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
..+... ..+ .|++ +++|.++| |.++ |+++++++.++.+... ..++ ..+|+.+++++..|+.+ +
T Consensus 189 -~~~~pl---~~g--~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~--~~~~~~a~l~~~~L~tl--~ 258 (386)
T PRK06767 189 -YLQRPL---ELG--CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGG--IMAPFDAWLLLRGLKTL--A 258 (386)
T ss_pred -ccCCch---hcC--CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCC--CCCHHHHHHHHcCCCcH--H
Confidence 222211 123 3665 56799987 7775 8899998876654311 1112 23566555554444422 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceee------------eccceEEEEEecC---ChHHHHHHHHHCCceEeecC--
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVKDV------------RGLGLIIGIEFDV---SATPVVDACRDSGLLVLTAG-- 428 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------~~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~~~~-- 428 (465)
...++.+++..++.+.| .++|.+..+ ++.|.++.++++. ...+|.+.|...++.+.-++
T Consensus 259 ~r~~~~~~~a~~la~~L----~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~ 334 (386)
T PRK06767 259 VRMDRHCDNAEKIVSFL----KNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTE 334 (386)
T ss_pred HHHHHHHHHHHHHHHHH----HcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcC
Confidence 34455555665555555 445543322 3568889998842 24567777765544432211
Q ss_pred ------------------------CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 429 ------------------------KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 429 ------------------------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
..+.+||++.+. +.+.+++-|+++|.
T Consensus 335 sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE----~~~dl~~dl~~al~ 384 (386)
T PRK06767 335 TLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLE----SWEDIVSDLEQALK 384 (386)
T ss_pred ccccCCCccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 125689987764 45566666666664
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=167.68 Aligned_cols=248 Identities=15% Similarity=0.148 Sum_probs=161.1
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..++++...+|+++|+++++.+.+++++||++|+..++..... ++++||+.++.|.+.........
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~-----------~Gd~Vl~~~~~y~~~~~~~~~~~-- 124 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALK-----------AGDHVVASDTLYGCTFALLNHGL-- 124 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC-----------CCCEEEEecCccchHHHHHHHHH--
Confidence 45667777899999999999977889999999999988875542 68899999987754432211100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCG 291 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~~g 291 (465)
......+.+++..|++++++++++ ++++|++|..++..|.+.+ +++|.++|+++ |+++|+||+|..
T Consensus 125 -------~~~G~~v~~vd~~d~e~l~~~i~~-~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~ 192 (400)
T PRK06234 125 -------TRYGVEVTFVDTSNLEEVRNALKA-NTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCT 192 (400)
T ss_pred -------hhCCeEEEEECCCCHHHHHHHhcc-CCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCc
Confidence 011133455666789999999975 4566666655555565554 99999999997 999999999864
Q ss_pred CCCCCccccccccCCcccEE--EecccCCC-ccce-eeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
+ ..+... +...|++ +++|.++| |.++ |++++++++++.+... ....+...+|+.++.++..|+.+ +
T Consensus 193 ~-~~~~~l-----~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl--~ 264 (400)
T PRK06234 193 P-YIQRPL-----QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL--Q 264 (400)
T ss_pred h-hcCCch-----hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--H
Confidence 3 222211 2234555 57799987 7665 9999999888876531 11223456777776666665532 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEecCC---hHHHHHHHH
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFDVS---ATPVVDACR 418 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~~~---~~~~~~~l~ 418 (465)
...++..++..++.+.|+ .+|.+. ...+.|.++.++++.. ..+|.+.|.
T Consensus 265 ~r~~~~~~na~~~a~~L~----~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~ 334 (400)
T PRK06234 265 IRMEKHCKNAMKVAKFLE----SHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVK 334 (400)
T ss_pred HHHHHHHHHHHHHHHHHH----cCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCC
Confidence 344555556655555554 333221 1235688889998422 234444443
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-17 Score=165.02 Aligned_cols=281 Identities=19% Similarity=0.158 Sum_probs=164.3
Q ss_pred HHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc---cCCCCcCC
Q 012368 144 ELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL---TSKEHYRS 218 (465)
Q Consensus 144 ~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~ 218 (465)
++.++++++++ .+++.+++||+++++.++..... . ++++|++.++.|+.+....... .+.....
T Consensus 116 e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~-~---------~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~- 184 (447)
T PRK00451 116 EYQTMICELTGMDVANASMYDGATALAEAALMAVRI-T---------KRKKVLVSGAVHPEYREVLKTYLKGQGIEVVE- 184 (447)
T ss_pred HHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh-c---------CCCEEEEeCccCHHHHHHHHHHHHhCCcEEEE-
Confidence 34466788887 56899999999988877765431 1 4788999887765444322111 1111111
Q ss_pred CCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE--eccccCCCCCC
Q 012368 219 PFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF--DEVQCGLGRTG 296 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~--DEv~~g~gr~g 296 (465)
.+..++ . -|++++++++++ ++++|++...+ ..|.+.+ +++|.++|+++|+++|+ |.+..|+ ..
T Consensus 185 --v~~~~~-~----~d~~~l~~~i~~-~t~~v~l~~pn-~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~--~~ 249 (447)
T PRK00451 185 --VPYEDG-V----TDLEALEAAVDD-DTAAVVVQYPN-FFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL--LK 249 (447)
T ss_pred --ecCCCC-C----CCHHHHHHhcCC-CeEEEEEECCC-CCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--CC
Confidence 111111 1 289999999975 46666655444 4566654 99999999999999998 5543221 11
Q ss_pred ccccccccCCcccEEE-----ecccCC-CccceeeEEeCHHHHhhccCC--------------------------CCcCC
Q 012368 297 YLWAHEHYGIFPDIMT-----LAKPLA-GGLPIGAALVTEKVASAINYG--------------------------DHGST 344 (465)
Q Consensus 297 ~~~~~~~~~~~pdi~t-----~sK~lg-~G~~iG~v~~~~~i~~~~~~~--------------------------~~~~t 344 (465)
... ....|+++ +||.+. +|+++|++++++++++.+.+. ....+
T Consensus 250 ---~~~--~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
T PRK00451 250 ---PPG--EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKAT 324 (447)
T ss_pred ---Ccc--cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccccc
Confidence 111 23457765 456555 478999999999888774211 01111
Q ss_pred --CCChHHHH-HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEE--EEEecCChHHHHHHHHH
Q 012368 345 --FAGSPLVC-NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII--GIEFDVSATPVVDACRD 419 (465)
Q Consensus 345 --~~~~~~~~-~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~--~i~~~~~~~~~~~~l~~ 419 (465)
++.+...+ .++.++++.+.++ ..+++.+....+++.+.+.+.+.+.+... ..+.+. .+.++....++.++|.+
T Consensus 325 ~~~~~~~~~~~~aaa~~l~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~v~~~~~~~~~~~~L~~ 402 (447)
T PRK00451 325 SNICTNQALNALAAAIYMSLLGPE-GLRELAEQNHQKAHYLAERLAEIGGVELF-DGPFFNEFVVRLPKPAEEVNEALLE 402 (447)
T ss_pred ccccccHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHhhcCCEEec-CCCeEEEEEEecCCCHHHHHHHHHh
Confidence 22222222 3333345544332 23333444444444444444444433222 222222 24443456889999999
Q ss_pred CCceEe----ecC--CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 420 SGLLVL----TAG--KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 420 ~Gv~v~----~~~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+|+... +.. ..+++|++++..+|+++++++++.|++++
T Consensus 403 ~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 403 KGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred cCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 988742 111 13589999998899999999999998764
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-17 Score=160.01 Aligned_cols=238 Identities=17% Similarity=0.183 Sum_probs=156.5
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+++++++...+|+++|++..+.+.+++++||++|+..++.... .++++|++.+++|++..........
T Consensus 45 ~Y~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~-----------~~GD~Vl~~~~~y~~~~~~~~~~~~ 113 (386)
T PRK08045 45 DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-----------KPGDLLVAPHDCYGGSYRLFDSLAK 113 (386)
T ss_pred eeeCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-----------CCCCEEEEcCCCcHHHHHHHHHHHh
Confidence 35677888899999999999987789999999999999888654 2689999999999764422211110
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
.. ...+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|+++|+++|+||+|...
T Consensus 114 ~~---------gi~v~~vd~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 114 RG---------CYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred hC---------CeEEEEeCCCCHHHHHHhccc-CCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc
Confidence 00 011223333588999999975 4566666655555555554 889999999999999999998643
Q ss_pred CCCCccccccccCCcccEE--EecccCCC--ccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
. .... .....|++ +++|.++| +...|++++ ++++.+.+.......+.+.+|+.+..++..|+.+ +..
T Consensus 180 ~-~~~p-----l~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl--~~R 251 (386)
T PRK08045 180 A-LQNP-----LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL--VPR 251 (386)
T ss_pred c-cCCc-----hhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccH--HHH
Confidence 1 1111 12234655 57899986 477898877 5677666543222334457888887777777643 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEec
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFD 407 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~ 407 (465)
.++..++...+.+.|+ .+|.+.. ..+.|.++.++++
T Consensus 252 ~~~~~~na~~la~~L~----~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~ 305 (386)
T PRK08045 252 MELAQRNAQAIVKYLQ----TQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD 305 (386)
T ss_pred HHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec
Confidence 3444455555544443 4442221 2467889999985
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=166.49 Aligned_cols=241 Identities=22% Similarity=0.236 Sum_probs=155.1
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...++++++++..+.+.+++++||++|+..+++.... ++++||+..+.| |.+.......
T Consensus 48 y~r~~~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~-----------~Gd~Vl~~~~~~-~~t~~~~~~~-- 113 (380)
T TIGR01325 48 YSRYANPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQ-----------AGDHVVASRSLF-GSTVGFISEI-- 113 (380)
T ss_pred eecCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-----------CCCEEEEecCCc-chHHHHHHHH--
Confidence 45667777899999999999888899999999999999976642 578898877665 3332211100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.......+.+++.+|++++++++++ ++++|++|..+++.|.+.+ +++|.++|+++|+++|+||+|..+
T Consensus 114 ------~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~- 181 (380)
T TIGR01325 114 ------LPRFGIEVSFVDPTDLNAWEAAVKP-NTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATP- 181 (380)
T ss_pred ------HHHhCCEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-
Confidence 0011234556677789999999975 5678888776666666655 999999999999999999998643
Q ss_pred CCCccccccccCCcccEEE--ecccCCC-ccce-eeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-GLPI-GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t--~sK~lg~-G~~i-G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
..... ....+|+++ ++|.++| |.++ |++++++++++.+...........+|..+.+++..++.+. ...+
T Consensus 182 ~~~~p-----l~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~--~r~~ 254 (380)
T TIGR01325 182 VLQQP-----LKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLS--LRMQ 254 (380)
T ss_pred ccCCc-----hhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHH--HHHH
Confidence 11111 123467774 7899987 6665 7788888887776532111122335555555554444332 2345
Q ss_pred HHHHHHHHHHHHHHHHH--H--cCCCce----------eeeccceEEEEEec
Q 012368 370 SVSKKGHYFKETLKQKL--A--RNPHVK----------DVRGLGLIIGIEFD 407 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~--~--~~~~~~----------~~~~~g~~~~i~~~ 407 (465)
+..++...+.+.|++.. + .+|... ...+.|.++.++++
T Consensus 255 ~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 255 KQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 55555555555554320 0 022111 12467889999985
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-17 Score=162.59 Aligned_cols=237 Identities=20% Similarity=0.208 Sum_probs=150.3
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+++++++++.+.+.+++++||++|+..++..+.. ++++||+..+.|.+.........
T Consensus 55 y~r~~~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~-----------~Gd~Vi~~~~~y~~t~~~~~~~~-- 121 (390)
T PRK08133 55 YSRFTNPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQ-----------AGDHVVSSRSLFGSTVSLFEKIF-- 121 (390)
T ss_pred eECCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-----------CCCEEEEccCcchhHHHHHHHHH--
Confidence 44556777899999999999988899999999999999886641 68899998887755432111000
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++.+|++++++++++ ++++|++|..++..|.+.+ +++|.++|++||+++|+|+++...
T Consensus 122 -------~~~G~~v~~vd~~d~~~l~~~i~~-~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~- 188 (390)
T PRK08133 122 -------ARFGIETTFVDLTDLDAWRAAVRP-NTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTP- 188 (390)
T ss_pred -------HHcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCccc-
Confidence 011234556666789999999975 5677777665555666654 899999999999999999997532
Q ss_pred CCCccccccccCCcccEE--EecccCCC-ccce-eeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
...... ..+ .|++ +++|.+++ |.++ |++++++++++.+...........+++.+..++..++.+ ....+
T Consensus 189 ~~~~pl---~~g--~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl--~~R~~ 261 (390)
T PRK08133 189 ALQQPL---KLG--ADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETL--SLRME 261 (390)
T ss_pred ccCCch---hhC--CcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchH--HHHHH
Confidence 111111 112 4655 56799987 7777 667778777665542211122234555554444433322 12233
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEec
Q 012368 370 SVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFD 407 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~ 407 (465)
+..++...+.+.| +++|.+. ...+.|.++.|++.
T Consensus 262 ~~~~~a~~la~~L----~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~ 313 (390)
T PRK08133 262 AHSANALALAEWL----EAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK 313 (390)
T ss_pred HHHHHHHHHHHHH----HhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 3344444444444 3343221 12467889999984
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-17 Score=162.91 Aligned_cols=288 Identities=15% Similarity=0.149 Sum_probs=174.8
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
++.++++....|++.|+++.+.+.+++++||++|+..++..+.. +++.|++.+|.|.++.........
T Consensus 77 y~R~~~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~-----------~Gd~Vv~~~p~Y~~~~~~~~~~l~- 144 (427)
T PRK07049 77 YSRFNHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVR-----------PGDVILHSQPLYGGTETLLAKTFR- 144 (427)
T ss_pred ccCCCCcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhC-----------CCCEEEEcCCCcccHHHHHHHHHH-
Confidence 46677777899999999999988899999999999988876652 689999999999887543211000
Q ss_pred CCcCCCCCCCCCCce-EeeCCCHHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH---hCCEEEE
Q 012368 214 EHYRSPFEPVMPGVN-FVEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD---AGALLVF 285 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~-~~~~~d~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~---~g~llI~ 285 (465)
.....+. +....|++++++++. ..++++|+++..+++.|.+ ++.+.+.+|++.|++ +++++|+
T Consensus 145 --------~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v-~d~~~l~~la~~~~~~~~~~~~vvv 215 (427)
T PRK07049 145 --------NFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSL-VDVAAVRRVADAIEARQGHRPIIAC 215 (427)
T ss_pred --------hcCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcc-cCHHHHHHHHHHhhhcccCCCEEEE
Confidence 0001111 112246777776663 2356666666554445544 465555555555433 7999999
Q ss_pred eccccCCCCCCccccccccCCcccEE--EecccCCC--ccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH
Q 012368 286 DEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361 (465)
Q Consensus 286 DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~ 361 (465)
||+|.++.... . . .++ .|++ ++||.++| |+++|++++++++++.+.........+.+|+.+.++...|+.
T Consensus 216 Dety~~~~~~~-p--l-~~g--~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t 289 (427)
T PRK07049 216 DNTLLGPVFQK-P--L-EHG--ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLET 289 (427)
T ss_pred ECCccccccCC-c--c-ccC--CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh
Confidence 99976542111 1 1 123 3554 78999995 799999999999888776432222344677877777666653
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee--------------------eeccceEEEEEecCC---hHHHHHHHH
Q 012368 362 ISNPAFLASVSKKGHYFKETLKQKLARNPHVKD--------------------VRGLGLIIGIEFDVS---ATPVVDACR 418 (465)
Q Consensus 362 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--------------------~~~~g~~~~i~~~~~---~~~~~~~l~ 418 (465)
+ ....++..++...+.+.|+ ++|.+.. ..+.|.++.|++... +.+|.+.|.
T Consensus 290 l--~~R~~~~~~~a~~la~~L~----~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~ 363 (427)
T PRK07049 290 L--VLRMERANRNARAVAEFLR----DHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQ 363 (427)
T ss_pred H--HHHHHHHHHHHHHHHHHHH----hCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCc
Confidence 3 2223444445555554444 3432111 235688999998433 233444332
Q ss_pred --HCCceEe--------ec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 419 --DSGLLVL--------TA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 419 --~~Gv~v~--------~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
..++-+. |. | .++.+||++.+. +.+.+++-|+++|+
T Consensus 364 l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~ 425 (427)
T PRK07049 364 IFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIE----HPDDLIADLAQALD 425 (427)
T ss_pred ccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcC----CHHHHHHHHHHHHh
Confidence 1111111 10 1 135789987764 56666777777664
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-17 Score=159.65 Aligned_cols=237 Identities=19% Similarity=0.184 Sum_probs=155.0
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
++.++++...+|+++|++..+.+.+++++||++|+..++..... ++++|++.+++|.+.......+...
T Consensus 45 Y~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~-----------~GD~Vl~~~p~y~~~~~~~~~~~~~ 113 (382)
T TIGR02080 45 YSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLG-----------PDDLLVAPHDCYGGTYRLLNALAKK 113 (382)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC-----------CCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 46678888999999999999888999999999999999986642 6899999999997644322111110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
. ...+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|+++|+++|+||+|..+-
T Consensus 114 ~---------~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~ 179 (382)
T TIGR02080 114 G---------CFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSPA 179 (382)
T ss_pred c---------CeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCcccc
Confidence 0 011223334588999999975 3566666554444555554 8899999999999999999986431
Q ss_pred CCCccccccccCCcccEE--EecccCCC--ccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
.. .. . ....|++ +++|.++| +++.|++++ ++++.+.+.......+...+|+.+..++..++.+. ...
T Consensus 180 ~~-~p--l---~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl~--~R~ 251 (382)
T TIGR02080 180 LQ-NP--L---ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLV--ARM 251 (382)
T ss_pred cC-Cc--h---hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchHH--HHH
Confidence 11 11 1 1223555 67899975 588999876 56777666432233345577887776655555332 123
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEec
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFD 407 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~ 407 (465)
++..++...+.+.| +.+|.+. ...|.|.++.+++.
T Consensus 252 ~~~~~na~~~a~~L----~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 304 (382)
T TIGR02080 252 RLQQRNAQAIVEYL----QTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK 304 (382)
T ss_pred HHHHHHHHHHHHHH----HhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec
Confidence 44444555544444 4444322 12467889999994
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=160.16 Aligned_cols=237 Identities=18% Similarity=0.165 Sum_probs=152.9
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..++++...+|+++|+++.+.+..++++||+.|+..++.... .++++||+.++.|.+..........
T Consensus 59 y~r~~~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l-----------~~Gd~Vl~~~~~y~~~~~~~~~~~~- 126 (398)
T PRK07504 59 YSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQV-----------KAGDHVVAARALFGSCRYVVETLLP- 126 (398)
T ss_pred eecCCCchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHh-----------CCCCEEEEcCCchhHHHHHHHHHHh-
Confidence 4556777789999999999997777789999999988776543 1689999999988765432211100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.....+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|+++|+++|+||+|..+
T Consensus 127 --------~~G~~v~~vd~~d~e~l~~ai~~-~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~- 192 (398)
T PRK07504 127 --------RYGIESTLVDGLDLDNWEKAVRP-NTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATP- 192 (398)
T ss_pred --------hcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCcccc-
Confidence 11122344555689999999975 4566666665555566555 999999999999999999998732
Q ss_pred CCCccccccccCCcccEE--EecccCCC-cccee-eEEeCHHHHhh-ccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIG-AALVTEKVASA-INYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG-~v~~~~~i~~~-~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..... . .++ .|++ +++|.+++ |.++| +++++++++.. +...........+|+.++.++..|+.+ +...
T Consensus 193 ~~~~~--~-~~g--aDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl--~~R~ 265 (398)
T PRK07504 193 LFQKP--L-ELG--AHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETL--PVRV 265 (398)
T ss_pred ccCCc--h-hhC--CCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchH--HHHH
Confidence 11111 1 123 4665 56799987 88885 66677765542 321111122345777777777766654 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEec
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFD 407 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~ 407 (465)
++..++...+.+.|++ +|.+. ..++.|.++.|++.
T Consensus 266 ~~~~~na~~la~~L~~----~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~ 318 (398)
T PRK07504 266 RQQTESAAAIADFLAG----HPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK 318 (398)
T ss_pred HHHHHHHHHHHHHHHc----CCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC
Confidence 4445555555555543 33211 12456889999994
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-17 Score=161.76 Aligned_cols=287 Identities=15% Similarity=0.107 Sum_probs=179.8
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.++.++++...+|+++|+++.+.+..++++||+.|+..++..... ++++||+..+.|.+.........
T Consensus 51 ~~y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~-----------~Gd~Vi~~~~~y~~t~~~~~~~~ 119 (391)
T TIGR01328 51 YIYSRLGNPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILK-----------AGDHLISDECLYGCTFALLEHAL 119 (391)
T ss_pred CceeCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-----------CCCEEEEecCcchHHHHHHHHHH
Confidence 4456677888899999999999988889999999999988876541 68899999888754332211110
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
......+.+++.+|++++++++++ ++++|++|..+++.|.+.+ +++|.++|+++|+++|+||++..
T Consensus 120 ---------~~~G~~~~~vd~~d~e~l~~~i~~-~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~ 185 (391)
T TIGR01328 120 ---------TKFGIQVDFINMAIPEEVKAHIKD-NTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFAT 185 (391)
T ss_pred ---------hcCCeEEEEECCCCHHHHHHhhcc-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCch
Confidence 011233456666789999999975 4667777665555566554 89999999999999999999863
Q ss_pred CCCCCccccccccCCcccEE--EecccCCC-ccc-eeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLP-IGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~-iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
. ..+.. .+...|++ +++|.+++ |.+ .|++++++++++.+.... .......+|+.++.++..|+.+ +
T Consensus 186 ~-~~~~~-----~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl--~ 257 (391)
T TIGR01328 186 P-MLTNP-----VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL--N 257 (391)
T ss_pred h-ccCCc-----hhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH--H
Confidence 2 22221 12235665 56799986 655 578888888887765311 1112334666666655555432 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEecCChH---HHHHHHH--HCCc
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFDVSAT---PVVDACR--DSGL 422 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~~~~~---~~~~~l~--~~Gv 422 (465)
...++..++..++.+.|++ +|.+. ..++.|.++.|+++.... +|.+.|. ..+.
T Consensus 258 ~r~~~~~~na~~la~~L~~----~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~ 333 (391)
T TIGR01328 258 IRMKRHSENAMKVAEYLKS----HPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAV 333 (391)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEec
Confidence 3355556666666665544 33211 124668899999843322 3333332 1111
Q ss_pred eE--------eec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 423 LV--------LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 423 ~v--------~~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
-+ .|. | ..+.+|+++.+. +.+.+++-|+++|..
T Consensus 334 s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~ 390 (391)
T TIGR01328 334 SLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLE----DADDLIADLKQALDA 390 (391)
T ss_pred CCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHHhh
Confidence 11 010 0 125789987764 566677777777754
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-17 Score=152.23 Aligned_cols=338 Identities=19% Similarity=0.225 Sum_probs=219.1
Q ss_pred EEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhccccc---C--CCCCHHHHHHHHHHHhhcCCCe
Q 012368 84 LASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS---N--MYYSIPQIELAKRLVACSFADR 157 (465)
Q Consensus 84 ~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~---~--~~~~~~~~~la~~l~~~~~~~~ 157 (465)
++..-+.+++ .||++++.|.+... ||. .++++.+.+...+++++.+. . ++..+.+.+++++|++.+|.+.
T Consensus 81 ~e~~~~~~~~-i~G~~~~N~aS~Nf---L~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~ 156 (467)
T KOG1358|consen 81 LESVMLPHVT-IDGKDVLNFASANF---LGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTED 156 (467)
T ss_pred cccccCCceE-ecCceeecccchhh---hhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcc
Confidence 4444444443 69999999998544 554 77999999999999864432 1 2233458899999999999655
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHH
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 237 (465)
.++-+-|-.++..++.+.. .+..|++.+..-+=.....+.++ ...+.++.+||+++
T Consensus 157 aivYs~gF~ti~S~ipafs------------KrGDIi~~de~~nfaIq~GlqlS------------RS~i~~Fkhndm~~ 212 (467)
T KOG1358|consen 157 AIVYSYGFSTIESAIPAFS------------KRGDIIFVDEAVNFAIQKGLQLS------------RSTISYFKHNDMED 212 (467)
T ss_pred eeeeccccchhhhcchhhh------------ccCcEEEEehhhhHHHHHHHhhh------------hheeEEecCCCHHH
Confidence 5555557778888888554 24456665544322211111111 13455678899999
Q ss_pred HHhhcCCCC------------eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCccccccc
Q 012368 238 TRKLIQPGK------------TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEH 303 (465)
Q Consensus 238 le~~l~~~~------------~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~g~~~~~~~ 303 (465)
+|+.+.... ...+++|....|.|.+.| +.+|.++..||...+|.||.++ | +|++|.+ ..++
T Consensus 213 lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrG-vteH 287 (467)
T KOG1358|consen 213 LERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLSFGVLGKTGRG-VTEH 287 (467)
T ss_pred HHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccccccccccCcc-cccc
Confidence 988875222 567899999999999988 9999999999999999999987 1 3444544 5778
Q ss_pred cCCc---ccEEEec--ccCCCccceeeEEeCHHHHhhccCCCCcCCCC--ChHHHHHHHHHHHHHhcC-chHHHHHHHHH
Q 012368 304 YGIF---PDIMTLA--KPLAGGLPIGAALVTEKVASAINYGDHGSTFA--GSPLVCNAAIAVLDKISN-PAFLASVSKKG 375 (465)
Q Consensus 304 ~~~~---pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~--~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~ 375 (465)
+++. .|+++.| -+++. ..|+.+|+.-+.++-+-...+..|+ .+|....||..++..+++ ++..+.+++..
T Consensus 288 ~~v~~~~iDiv~~sm~~alas--~GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~ 365 (467)
T KOG1358|consen 288 FGVPITDIDIVTASMETALAS--GGGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKV 365 (467)
T ss_pred CCCCccceeeeeecccccccc--cCceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccc
Confidence 8774 5677654 44542 2255566544443322223344444 457777788888887754 66777777777
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEecC------C----hHHHHHHHHHCCceEeecC---------CCCEEEEe
Q 012368 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV------S----ATPVVDACRDSGLLVLTAG---------KGNVVRLV 436 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~------~----~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~ 436 (465)
..+...|... -.....-.....++.+.+.. + ..++++.++.+|+++.... ....+|++
T Consensus 366 ~~~H~~l~~~---s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~ 442 (467)
T KOG1358|consen 366 AKFHAALSSN---SGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRIC 442 (467)
T ss_pred cccchhhhcC---CceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEE
Confidence 7776666542 11111112223334444421 1 2346666666788876431 13469999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Q 012368 437 PPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++..++++|++++.+.|+++...
T Consensus 443 ~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 443 VSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-16 Score=139.99 Aligned_cols=312 Identities=15% Similarity=0.128 Sum_probs=186.1
Q ss_pred CCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 138 YSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
.......|+..+.+.+| .+.|.+|||...|-..++.+...++. ++ ..+.-++-..|.|-|+.+..+.-.--
T Consensus 76 ~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~s--dG---~~k~illPLaPeYiGY~d~~l~~d~f 150 (417)
T COG3977 76 KAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRS--DG---TEKKILLPLAPEYIGYADAGLEEDLF 150 (417)
T ss_pred hhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccC--CC---cceeEeeccChhhccccccccCccce
Confidence 34457788888888887 67899999998888877775543221 11 12334455688999887654431110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
..+++...-+ +...|--+.|.++|+- .+.+.+|++.- .|++|.+ .+.+++.+|.+++++||+.||+|.+|. .
T Consensus 151 Vs~kP~iel~-~~g~FKY~vDF~~l~i---~e~~g~ic~SRPtNPTGNV--lTdeE~~kldalA~~~giPliIDnAYg-~ 223 (417)
T COG3977 151 VSAKPNIELL-PAGQFKYHVDFEHLHI---GESTGAICVSRPTNPTGNV--LTDEELAKLDALARQHGIPLIIDNAYG-V 223 (417)
T ss_pred eeccCCcccc-cccceeeccCHHHccc---ccccceEEecCCCCCCCCc--ccHHHHHHHHHHhhhcCCcEEEecccC-C
Confidence 1111111111 1111111237777642 24567776654 5555543 488999999999999999999999985 3
Q ss_pred CCCCccccccccCCcccEE---EecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchH--
Q 012368 293 GRTGYLWAHEHYGIFPDIM---TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF-- 367 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~---t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~-- 367 (465)
-+.+.-|.-...-..++++ ++||.=-.|.|+|.+++++++++.+.......+.....++.+.+...++...--.+
T Consensus 224 PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlse 303 (417)
T COG3977 224 PFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSE 303 (417)
T ss_pred CCCceecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHH
Confidence 2333322111111234443 45663224899999999999999886533222333333444444444442111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCCceeeeccce-EEEEEe---cCChHHHHHHHHHCCceEeecC------------
Q 012368 368 ---LASVSKKGHYFKETLKQKLARNPHVKDVRGLGL-IIGIEF---DVSATPVVDACRDSGLLVLTAG------------ 428 (465)
Q Consensus 368 ---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~-~~~i~~---~~~~~~~~~~l~~~Gv~v~~~~------------ 428 (465)
..-.+++.+.....|++.+.+.+.... ++.|. |.|+.| +....++.++|.++||++.|+.
T Consensus 304 qVIrPFY~~~~q~~~~~l~~~lp~~~~~iH-kpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH 382 (417)
T COG3977 304 QVIRPFYRNRVQTTIAILRRYLPEYRCLIH-KPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPH 382 (417)
T ss_pred HhhhHHHHHHHHHHHHHHHHhcCccceeee-cCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCC
Confidence 112223333334444444444443222 34454 455555 4667899999999999999873
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhcC
Q 012368 429 KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 464 (465)
Q Consensus 429 ~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~ 464 (465)
.+.++|+ +++-+++.|+..+.+|.+.+++.-++.
T Consensus 383 ~hqC~Rm--n~~~~~~~ie~Gva~lae~ve~~yq~~ 416 (417)
T COG3977 383 THQCMRM--NYVPEPEKIEKGVAILAEEVERAYQEV 416 (417)
T ss_pred ccceEEE--ecCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 1457877 678899999999999999998877664
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=145.06 Aligned_cols=289 Identities=17% Similarity=0.211 Sum_probs=182.7
Q ss_pred CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012368 138 YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
+.....++...+++--+ .|.+....|..|.+++.+|..+. +++++|+...|+|.-++..+.. .+...
T Consensus 67 ~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~----------PGkeKIl~cPPtysMY~v~A~i-Nd~eV 135 (375)
T KOG0633|consen 67 PDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCD----------PGKEKILDCPPTYSMYVVDAAI-NDAEV 135 (375)
T ss_pred CCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhheec----------CCccceeecCCcceeEEEEeec-CCceE
Confidence 33334556666665555 78999999999999999998873 2469999999999666544322 11111
Q ss_pred cCCCCCCCCCCceEeeCCCHHHHHhhcCC-CCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 216 YRSPFEPVMPGVNFVEYGNIEATRKLIQP-GKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.. .|+.+.+.. |.+++.+.++. ..+++++ +.|.|++|. +. ..+.+.+|.+.-+ +.++++||+|-+|.
T Consensus 136 vk---vpl~pdF~l----nvdai~evl~~ds~iK~~F~tSPgNPtg~-~i-k~~di~KiLe~p~--nglVVvDEAYidFs 204 (375)
T KOG0633|consen 136 VK---VPLNPDFSL----NVDAIAEVLELDSKIKCIFLTSPGNPTGS-II-KEDDILKILEMPD--NGLVVVDEAYIDFS 204 (375)
T ss_pred EE---ecCCCCccc----cHHHHHHHHhccccceEEEEcCCCCCCcc-cc-cHHHHHHHHhCCC--CcEEEEeeeeEeec
Confidence 11 122232221 78888888873 3565554 555565554 33 6666777776554 78999999999883
Q ss_pred CCCccccccccCCcccEE---EecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 294 RTGYLWAHEHYGIFPDIM---TLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
|.........-.|+++ ||||++| +|+|+|+...+.++.+.+.. ....|+.+.++..+|+++|..-. -...+
T Consensus 205 --g~~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~--~KaPYNiS~~~s~~AL~Als~~n-~kkme 279 (375)
T KOG0633|consen 205 --GVESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNR--AKAPYNISVAGSVAALAALSDSN-GKKME 279 (375)
T ss_pred --cccccchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHh--ccCCccccchhHHHHHHhcCccc-chHHH
Confidence 3222222223346655 6899999 69999999999998887763 34567778888888888886211 11222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceee--eccceEEEEEec-CC---hHHH-HHHHHHCCceEeecCC----CCEEEEecC
Q 012368 370 SVSKKGHYFKETLKQKLARNPHVKDV--RGLGLIIGIEFD-VS---ATPV-VDACRDSGLLVLTAGK----GNVVRLVPP 438 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~g~~~~i~~~-~~---~~~~-~~~l~~~Gv~v~~~~~----~~~lRi~~~ 438 (465)
.++...-+-+.+|-..+...+..... ....+|+.++.. .+ +..+ .+.+-+.||.++-.+. .+++|++
T Consensus 280 ~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit-- 357 (375)
T KOG0633|consen 280 DVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT-- 357 (375)
T ss_pred HHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE--
Confidence 23332223333343444444544322 234567777772 21 2233 3334468999987653 4689997
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 012368 439 LIISEQELDQAVEILCKT 456 (465)
Q Consensus 439 ~~~t~e~i~~~l~~l~~~ 456 (465)
..|+|+.+.+++.++++
T Consensus 358 -vGt~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 358 -VGTPEENTVLMKCLKQF 374 (375)
T ss_pred -cCCcccchHHHHHHHhh
Confidence 56888888888888765
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=159.84 Aligned_cols=237 Identities=18% Similarity=0.139 Sum_probs=155.4
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
++.++++...+|+++|+++.+.+.+++++||+.|+..++..+.. ++++||+....|.+.........
T Consensus 64 Y~r~~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~-----------~Gd~Vl~~~~~~~~t~~~~~~~~-- 130 (403)
T PRK07810 64 YSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLG-----------AGDRLVAARSLFGSCFVVCNEIL-- 130 (403)
T ss_pred eeCCCCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhC-----------CCCEEEEccCCcchHHHHHHHHH--
Confidence 45677888899999999999988999999999999998876542 68889888765533321111100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..|++++++++++ ++++|++|..++..|.+.+ +++|.++|+++|+++|+||+|...
T Consensus 131 -------~~~G~~v~~vd~~d~~~l~~ai~~-~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~~- 197 (403)
T PRK07810 131 -------PRWGVETVFVDGEDLSQWEEALSV-PTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFATP- 197 (403)
T ss_pred -------HHcCcEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCcc-
Confidence 011234556666799999999975 4667777766656666655 999999999999999999998632
Q ss_pred CCCccccccccCCcccEEE--ecccCCC-ccce-eeEEeCHHHHh-hccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t--~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..... . ..+ .|+++ ++|.++| |.++ |+++++++.+. .+...........+|+.++.++..|+.+ +...
T Consensus 198 ~~~~~--~-~~g--aDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl--~~R~ 270 (403)
T PRK07810 198 LLQRG--L-PLG--ADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETL--ALRV 270 (403)
T ss_pred ccCCh--h-hcC--CcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcH--HHHH
Confidence 11111 1 123 47664 5699987 7776 77888876554 2322111222346788777777777643 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCceee------------------eccceEEEEEec
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKDV------------------RGLGLIIGIEFD 407 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~i~~~ 407 (465)
++..++..++.+.| +.+|.+..| .+.|.++.++++
T Consensus 271 ~~~~~~a~~~a~~L----~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~ 323 (403)
T PRK07810 271 RHSNASALRIAEFL----EGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD 323 (403)
T ss_pred HHHHHHHHHHHHHH----hcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 44445555554444 444533322 267889999984
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-16 Score=157.96 Aligned_cols=218 Identities=17% Similarity=0.133 Sum_probs=144.4
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.++.++.+...+|+++|+++.+.+..+.++||+.|+.++++... .++++||+..+.|.+ +.......
T Consensus 58 ~y~r~~~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll-----------~~Gd~Viv~~~~y~~-t~~~~~~~- 124 (403)
T PRK07503 58 FYSRISNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLL-----------RPGDEVIVDQTLYGC-TFAFLHHG- 124 (403)
T ss_pred eeeCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-----------CCCCEEEEccCccch-HHHHHHHH-
Confidence 34566777789999999999987777888899999999887553 168899999887733 22211100
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
.......+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|+++|+++|+|++|...
T Consensus 125 -------~~~~G~~v~~vd~~d~~~l~~~i~~-~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~ 192 (403)
T PRK07503 125 -------LGEFGVTVRHVDLTDPAALKAAISD-KTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTP 192 (403)
T ss_pred -------HhhCCEEEEEeCCCCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 0011233455666789999999975 4667777655555566554 899999999999999999999742
Q ss_pred CCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
..+... +...|++ +++|.+++ | .+.|++++++++++.+... ........+++.++.++..|+.+ +.
T Consensus 193 -~~~~~l-----~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl--~~ 264 (403)
T PRK07503 193 -YLQRPL-----ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTL--AL 264 (403)
T ss_pred -ccCCch-----hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchH--HH
Confidence 222221 2234655 57799997 5 7889999888888777521 22223556777777666655543 22
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012368 367 FLASVSKKGHYFKETLK 383 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~ 383 (465)
..++..++...+.+.|+
T Consensus 265 r~~~~~~na~~~a~~L~ 281 (403)
T PRK07503 265 RMDRHCASAQAVAEWLA 281 (403)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23333444555444444
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=159.05 Aligned_cols=287 Identities=18% Similarity=0.151 Sum_probs=169.8
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.++.++++...+|++++++..+.+.+++++||++|+.+++..+.. ++|+||+.++.|.+.........
T Consensus 57 ~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~-----------~GD~Vl~~~~~y~~~~~~~~~~~ 125 (394)
T PRK07050 57 WRYGLHATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVK-----------AGDDVLIPDNAYGPNRDHGEWLA 125 (394)
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhC-----------CCCEEEEecCCcccHHHHHHHHH
Confidence 3456778888999999999999999999999999999999986642 68999999999976542110100
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
......+.+++..+.++++++++++ +++|++|..++..+ +...+++|.++|+++|+++|+|++|..
T Consensus 126 ---------~~~Gi~v~~vd~~~~~~l~~~i~~~-tklV~le~p~Np~~----~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 126 ---------RDFGITVRFYDPLIGAGIADLIQPN-TRLIWLEAPGSVTM----EVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred ---------HhcCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCc----cHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 0111223344444668899999754 56666664433333 344599999999999999999999863
Q ss_pred CCCCCccccccccCCcccEE--EecccCCCc--cceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAGG--LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G--~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
. .. +.......|++ +++|.++|| .+.|++++ ++++++.+.........+.+|..+..++..|+.+ ..
T Consensus 192 ~-~~-----~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl--~~ 263 (394)
T PRK07050 192 G-LA-----FKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSL--QV 263 (394)
T ss_pred c-cc-----cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcH--HH
Confidence 1 11 11111223655 578999863 67888776 5777776643222122244555443333222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEecC-----ChHHHHHHHHHCCce
Q 012368 367 FLASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFDV-----SATPVVDACRDSGLL 423 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~~-----~~~~~~~~l~~~Gv~ 423 (465)
.+++..++..++.+.|+ ++|.+. ...+.|.++.+.+.. ...+|.+.|...++-
T Consensus 264 Rl~~~~~~a~~la~~L~----~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~ 339 (394)
T PRK07050 264 RLAAHDRSALEVAEWLK----ARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIG 339 (394)
T ss_pred HHHHHHHHHHHHHHHHH----hCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeec
Confidence 23333444444444443 333221 123557788888742 133455555443322
Q ss_pred Ee---------ecC-----------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 424 VL---------TAG-----------KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 424 v~---------~~~-----------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+. |.. .++.+||++.+.. .+.+++-|+++|..
T Consensus 340 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGlE~----~~dl~~dl~~al~~ 391 (394)
T PRK07050 340 WSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGLED----EADLIADLEQALEA 391 (394)
T ss_pred cccCCccceEeeCcccccchhhcCCCCCEEEEEeCcCC----HHHHHHHHHHHHHH
Confidence 21 210 1357899887654 44455555555543
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=157.88 Aligned_cols=290 Identities=18% Similarity=0.176 Sum_probs=171.0
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++...+|++++++..+.+..+.++||++|+..++.... .++++||+..+.|.+.........
T Consensus 39 y~r~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~-----------~~Gd~Vl~~~~~~~~ty~~~~~~~-- 105 (376)
T PRK06460 39 YSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALL-----------KPGNSVLVHRDMFGRSYRFFTDYL-- 105 (376)
T ss_pred eeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEecCCcCcHHHHHHHHH--
Confidence 4555667788999999999985555666888999998887654 168899998876643221111000
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+..++.++.+.+++++++ ++++|+++..+++.|.+.+ +++|.++|++||+++|+||+|..+
T Consensus 106 -------~~~G~~v~~~~~~~~~~l~~~~~~-~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~- 172 (376)
T PRK06460 106 -------KNWGVNVDASNPGSDNIIEKAKSK-RYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTP- 172 (376)
T ss_pred -------HhhCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-
Confidence 001122344555565666666554 4566666665555566555 778999999999999999998643
Q ss_pred CCCccccccccCCcccEE--EecccCCC--ccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
..... . ..+ .|++ ++||+++| +.++|++++++++++.+.......+.+.+|..+..++..++.+ +...+
T Consensus 173 ~~~~~--l-~~~--~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l--~~r~~ 245 (376)
T PRK06460 173 INQKP--L-ELG--ADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTL--KIRMD 245 (376)
T ss_pred ccCCh--h-hcC--CCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH--HHHHH
Confidence 11111 1 123 3554 68899975 3789999999998887754322223334554444433334333 24456
Q ss_pred HHHHHHHHHHHHHHHHH--H--cCCCce----------eeeccceEEEEEecCC---hHHHHHHHH--HCCceE------
Q 012368 370 SVSKKGHYFKETLKQKL--A--RNPHVK----------DVRGLGLIIGIEFDVS---ATPVVDACR--DSGLLV------ 424 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~--~--~~~~~~----------~~~~~g~~~~i~~~~~---~~~~~~~l~--~~Gv~v------ 424 (465)
++.++.+++.+.|++.. . .+|... ...+.|.++.++++.. ..+|.+.|. ..++-+
T Consensus 246 ~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl 325 (376)
T PRK06460 246 VINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSV 325 (376)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceE
Confidence 66666766666665420 0 011111 1246789999999533 223443331 111111
Q ss_pred --eec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 425 --LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 425 --~~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.|. | .++.+|+++.+. +.+.+++.|+++|..+
T Consensus 326 ~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 326 ISHPATMSHRTLSLEERKIVGITDSLLRLSVGIE----DVNDLIEDLDRALSTL 375 (376)
T ss_pred EeCccccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHhh
Confidence 111 1 135799987754 5666677777777543
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-16 Score=154.65 Aligned_cols=289 Identities=15% Similarity=0.099 Sum_probs=175.8
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+++++++...+|+++|+++.+.+.+++++||++|+..++..+.. ++++|++.++.|.+.........
T Consensus 45 ~~Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~-----------~Gd~Il~~~~~y~~~~~~~~~~~ 113 (388)
T PRK08861 45 YDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLG-----------PDDLIVAPHDCYGGTYRLFNTRA 113 (388)
T ss_pred ccccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC-----------CCCEEEEcCCchHHHHHHHHHHH
Confidence 3456778888999999999999999999999999999999986642 68999999999965432111110
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
. .....+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|+++|+++|+||+|..
T Consensus 114 ~---------~~gi~v~~vd~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~ 179 (388)
T PRK08861 114 N---------KGDFKVQFVDQSDAAALDAALAK-KPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLT 179 (388)
T ss_pred h---------cCCeEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccc
Confidence 0 00112334444689999999975 4566666544444555555 88999999999999999999863
Q ss_pred CCCCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 292 LGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
. .... ......|+++ ++|.++| + ...|+++++ +++.+.+...........+|+.+...+-.|+.+ .-
T Consensus 180 ~-~~~~-----pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl--~l 251 (388)
T PRK08861 180 P-VLQK-----PLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTL--GA 251 (388)
T ss_pred c-ccCC-----CcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCH--HH
Confidence 2 1111 1123457664 5699987 3 678888774 566655542222222345676665544444322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEecCChH---HHHHHHH--HCCce
Q 012368 367 FLASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFDVSAT---PVVDACR--DSGLL 423 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~~~~~---~~~~~l~--~~Gv~ 423 (465)
.+++..++...+.+.|+ .+|.+. ...+.|.++.|++..... +|.+.|. ..++-
T Consensus 252 R~~~~~~~a~~~a~~L~----~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s 327 (388)
T PRK08861 252 RMRVHEESAQQILAYLQ----TQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAES 327 (388)
T ss_pred HHHHHHHHHHHHHHHHH----hCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccC
Confidence 23444444444444443 444221 124678899999843222 3333322 11111
Q ss_pred E--------eec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 424 V--------LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 424 v--------~~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+ .|. | .++.+|+++.+. +.+.+++-|+++|+.+.
T Consensus 328 ~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE----~~~dli~Dl~~al~~~~ 385 (388)
T PRK08861 328 LGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLE----DAQDLIADLDQAFAKAA 385 (388)
T ss_pred CCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHHHHHH
Confidence 1 110 1 135799987764 56666777777776554
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-16 Score=158.16 Aligned_cols=325 Identities=15% Similarity=0.117 Sum_probs=191.8
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCC--------CHHHHHHHHHHHhhcCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 114 HGDADWIKAVVDQANVLTHVSNMYY--------SIPQIELAKRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~~~~~--------~~~~~~la~~l~~~~~~~~v-~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
|.+|.|++++.+...... ++.|. .+...++.+++++.++.+.+ ++.++|+.+...++.+++.+....+.
T Consensus 81 ~~~p~i~~~~~~~~~~~~--~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd 158 (481)
T PRK04366 81 KYNPKINEKVARLPGFAE--LHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGD 158 (481)
T ss_pred CCCHHHHHHHHhCcchhc--CCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCc
Confidence 577888888887522211 12221 12366788888888885544 44456766665554444433211110
Q ss_pred CCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccC
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~ 264 (465)
.++++|++.++.|+.+...+ ...+..... .+...+.. .|+++|++++.++..++++..|+ ..|.+
T Consensus 159 ---~~~~~Vlv~~~~hp~~~~~~-~~~G~~vv~---v~~~~~~~----~D~e~L~~~i~~~t~~V~v~~Pn--~tG~~-- 223 (481)
T PRK04366 159 ---TKRTEVIVPDSAHGTNPASA-AMAGFKVVE---IPSNEDGL----VDLEALKAAVGEDTAALMLTNPN--TLGLF-- 223 (481)
T ss_pred ---CCCCEEEEcCCccHhHHHHH-HHcCCEEEE---eecCCCCC----cCHHHHHhhcccCCeEEEEeCCC--Ccccc--
Confidence 02458999998776655432 222211111 11111111 28999999997544444444444 34543
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCC-----ccceeeEEeCHHHHhhcc
Q 012368 265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG-----GLPIGAALVTEKVASAIN 337 (465)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~-----G~~iG~v~~~~~i~~~~~ 337 (465)
...+++|.++|+++|+++|+|+++. .+..|.. ....+ ..|++++ -|++++ |-.+|++.+++++.+.+.
T Consensus 224 -~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~~~--GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp 298 (481)
T PRK04366 224 -ERNILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPGDM--GFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLP 298 (481)
T ss_pred -chHHHHHHHHHHHcCCEEEEEecCh-hhhcccC-Ccccc--CCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCC
Confidence 1238999999999999999999985 2222221 11223 3588765 398862 355778888887776653
Q ss_pred CCC-------------------CcCCCCChHHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 338 YGD-------------------HGSTFAGSPLVCNAAIAVLDKISNPAF---LASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 338 ~~~-------------------~~~t~~~~~~~~~aa~a~L~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
... ..-.++++.+...++...+..+..+++ .++..++.++++++|.++ +....
T Consensus 299 ~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~---~~~~~-- 373 (481)
T PRK04366 299 VPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI---YDLPY-- 373 (481)
T ss_pred CCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---CcccC--
Confidence 110 001122344555666666666655543 344566778888888775 22111
Q ss_pred eccc-eEEEEEe------cCChHHHHHHHHHCCceEeecC----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhcC
Q 012368 396 RGLG-LIIGIEF------DVSATPVVDACRDSGLLVLTAG----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 464 (465)
Q Consensus 396 ~~~g-~~~~i~~------~~~~~~~~~~l~~~Gv~v~~~~----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~ 464 (465)
.+.. .-+.+.+ +.+..++.+.|.++|+.+.... ..+.+|+++...+|++|||++++.|+++.++..+++
T Consensus 374 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~~~ 453 (481)
T PRK04366 374 DRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKENP 453 (481)
T ss_pred CCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 1100 1122221 1357789999999999875221 136799999999999999999999999998887765
Q ss_pred C
Q 012368 465 N 465 (465)
Q Consensus 465 ~ 465 (465)
+
T Consensus 454 ~ 454 (481)
T PRK04366 454 E 454 (481)
T ss_pred H
Confidence 3
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-17 Score=161.56 Aligned_cols=285 Identities=16% Similarity=0.095 Sum_probs=175.1
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+..+.++...+|+++++++.+.+..++++||+.|+..++.... .++++||+..+.|++.........
T Consensus 56 ~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~-----------~~Gd~Vl~~~~~y~~t~~~~~~~~- 123 (389)
T PRK05968 56 IYSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFV-----------EPGDRIVAVRHVYPDAFRLFETIL- 123 (389)
T ss_pred cccCCCChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHHH-
Confidence 34566677789999999999997777778999999998887543 168999999999876432111100
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
......+.+++..|++++++++. ++++|++|...+.. .+...+++|.++|++||+++|+|+++..+
T Consensus 124 --------~~~G~~v~~vd~~d~~~l~~~i~--~tklV~ie~pt~~~----~~~~dl~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 124 --------KRMGVEVDYVDGRDEEAVAKALP--GAKLLYLESPTSWV----FELQDVAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred --------HHcCceEEEeCCCCHHHHHHhcc--cCCEEEEECCCCCC----CcHHHHHHHHHHHHHcCCEEEEECCCcch
Confidence 01112344556668999999983 45677777433332 24456999999999999999999998643
Q ss_pred CCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccCCCC-cCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDH-GSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~-~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
...... ..+ .|++ +++|.++| | .+.|++++++++++.+..... ......+++.++.++..|+.+ +..
T Consensus 190 -~~~~p~---~~g--~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--~~r 261 (389)
T PRK05968 190 -VFQRPI---TLG--VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--PLR 261 (389)
T ss_pred -hccCch---hcC--CcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH--HHH
Confidence 111111 123 3555 56799986 4 678999999888876653111 111334666666665555533 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceeee-------------ccceEEEEEec--CChHHHHHHHHHCCceEe-------
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVKDVR-------------GLGLIIGIEFD--VSATPVVDACRDSGLLVL------- 425 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------------~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~------- 425 (465)
.++-.++..++.+ .++.+|.+..+. +.|.++.++++ ....+|++.|...++.+.
T Consensus 262 ~~~~~~~a~~la~----~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~sl 337 (389)
T PRK05968 262 MKAHEASALEIAR----RLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESL 337 (389)
T ss_pred HHHHHHHHHHHHH----HHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCce
Confidence 3333344444444 444555433222 45778888884 234566666654432221
Q ss_pred --ec----------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 426 --TA----------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 426 --~~----------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
|. | .++.+|+++.+..++ .+++-|+++|+.
T Consensus 338 v~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~----dl~~dl~~al~~ 386 (389)
T PRK05968 338 VVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTE----ALWADLEQALAA 386 (389)
T ss_pred eeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHH----HHHHHHHHHHHH
Confidence 11 1 135799998876544 455555555544
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-16 Score=153.91 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=153.5
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+|+++|+++.+.+..++++||++|+..++..+.. ++++|++..|.|++..........
T Consensus 54 y~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all~-----------pGD~Vvv~~p~Y~~t~~~~~~~~~- 121 (405)
T PRK08776 54 YTRSGNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALLQ-----------PGDTLVVPHDAYGGSWRLFNALAK- 121 (405)
T ss_pred ccCCCChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHhC-----------CCCEEEEccCCchHHHHHHHHHHH-
Confidence 46677777889999999998866667788899999988876642 689999999999764321111100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.....+..++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|+++|+++|+||+|....
T Consensus 122 --------~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 122 --------KGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred --------hcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccc
Confidence 01122344555689999999975 4555555443334455443 8999999999999999999986421
Q ss_pred CCCccccccccCCcccEEE--ecccCCC--ccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIMT--LAKPLAG--GLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t--~sK~lg~--G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
.. .. . ....|+++ .+|.++| +...|++++ ++++.+.+........++.+|+.+.+....++.+ +...
T Consensus 189 ~~-~p--l---~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl--~~r~ 260 (405)
T PRK08776 189 LQ-KP--L---EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTL--DARL 260 (405)
T ss_pred cC-Cc--c---cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcH--HHHH
Confidence 11 11 1 12346664 5699985 377888877 4677666643222233456888888877666543 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEec
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFD 407 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~ 407 (465)
++..++...+.+.|++ +|.+. ...+.|.++.+++.
T Consensus 261 ~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 313 (405)
T PRK08776 261 RVHQENADAIAALLDG----HAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE 313 (405)
T ss_pred HHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence 5566666666555543 33221 12477889999994
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=161.33 Aligned_cols=317 Identities=13% Similarity=0.092 Sum_probs=184.3
Q ss_pred CCHHHHHHHHHHHhh-c--ccccCC--CCCHHHHH----HHHHHHhhcC--CCeEEec---CCHHHHHHHHHHHHHHHhh
Q 012368 115 GDADWIKAVVDQANV-L--THVSNM--YYSIPQIE----LAKRLVACSF--ADRVFFS---NTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~--~~~~~~--~~~~~~~~----la~~l~~~~~--~~~v~~~---~sG~eA~~~al~~a~~~t~ 180 (465)
.+|.+++++...+.. + ++.+.. ........ .++++++.++ .+.+.++ +||++||..++..+..
T Consensus 46 ~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~--- 122 (452)
T PTZ00094 46 TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQ--- 122 (452)
T ss_pred CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcC---
Confidence 568899998887754 2 111111 11222222 3346777777 4556566 7999999998886641
Q ss_pred hcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcc
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep 254 (465)
++++|++.+. -||....... +..... ......-.+..++. .|+++|+++++..+.+.|++.
T Consensus 123 --------~gd~Ii~~~~-ehg~~l~~~~~l~~~~~---~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~- 189 (452)
T PTZ00094 123 --------PHDRIMGLDL-PSGGHLTHGFYTAKKKV---SATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG- 189 (452)
T ss_pred --------CCCEEEeccc-ccCCccccccccccccc---ccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe-
Confidence 5777777544 4555433211 100000 00000000111111 289999999963334455552
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccccCCcccEEEec--ccCCCccceeeEEeCHH
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK 331 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~ 331 (465)
.++.|...+ +++|.++|+++|+++++|++|+ +|..+... ..... ..|++++| |++.|.. .|+++++++
T Consensus 190 -~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~--~~D~l~~S~hK~l~GP~-Gg~l~~~~~ 260 (452)
T PTZ00094 190 -ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP--YADVVTTTTHKSLRGPR-SGLIFYRKK 260 (452)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC--CCcEEEcCCccCCCCCC-ceEEEEecc
Confidence 234555555 8999999999999999999997 55443211 11111 46888765 9997644 377777765
Q ss_pred HHhhccCC---CCcCCC--CChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEE
Q 012368 332 VASAINYG---DHGSTF--AGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403 (465)
Q Consensus 332 i~~~~~~~---~~~~t~--~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~ 403 (465)
+.+.+... .....+ +.++...++..++++.+.. +++.+++.++.+++.+.|.+. .+.+..... ......
T Consensus 261 ~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~--g~~v~~~~~-~~~~~~ 337 (452)
T PTZ00094 261 VKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR--GYDLVTGGT-DNHLVL 337 (452)
T ss_pred cchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC--CcEEecCCC-CCceEe
Confidence 44322110 011111 3466777788888888743 346677778888888777652 222111001 112233
Q ss_pred EEe---cCChHHHHHHHHHCCceEeec----C----CCCEEEEecCCCCc----HHHHHHHHHHHHHHHHH
Q 012368 404 IEF---DVSATPVVDACRDSGLLVLTA----G----KGNVVRLVPPLIIS----EQELDQAVEILCKTLPV 459 (465)
Q Consensus 404 i~~---~~~~~~~~~~l~~~Gv~v~~~----~----~~~~lRi~~~~~~t----~e~i~~~l~~l~~~l~~ 459 (465)
+.+ +.....+...|.++||.+... . .++.+|++++..++ ++|++++++.|.+++..
T Consensus 338 v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 338 VDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred ecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 344 234567777787789999532 1 13679999976665 99999999999998874
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=156.37 Aligned_cols=279 Identities=18% Similarity=0.145 Sum_probs=172.0
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..++++...+|+++|++.. .+.+++++||++|+..++.... .++++||+.+++|++....+....
T Consensus 45 y~ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all-----------~~Gd~Vl~~~~~y~~~~~~~~~~l-- 110 (366)
T PRK07582 45 YGRASNPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALL-----------RPGDTVVVPADGYYQVRALAREYL-- 110 (366)
T ss_pred eECCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhc-----------CCCCEEEEeCCCcHhHHHHHHHHH--
Confidence 45677777899999999998 5667778889999998887553 168999999999977654321100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++.++.. +... + ++++|+++..++++|.+.+ +++|.++|+++|+++|+||+|...
T Consensus 111 -------~~~G~~v~~v~~~~~~--~~~~-~-~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~- 174 (366)
T PRK07582 111 -------APLGVTVREAPTAGMA--EAAL-A-GADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATP- 174 (366)
T ss_pred -------hcCeEEEEEECCCChH--HHhc-c-CceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCc-
Confidence 0011223444444332 1222 3 4566666655445554544 999999999999999999998521
Q ss_pred CCCccccccccCCcccEE--EecccCCC--ccceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
.|.. .. ....|++ +++|+++| |+++||++++ +++++.+...........+|+.+..+...|+.+ +...
T Consensus 175 -~~~~-p~---~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl--~~R~ 247 (366)
T PRK07582 175 -LGQR-PL---ELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTL--GLRF 247 (366)
T ss_pred -cccC-ch---hcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccH--HHHH
Confidence 1211 11 2234665 57799976 6899999874 677776653222222345677766655555532 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCChHHHHHHHHHCCceEee---c
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVSATPVVDACRDSGLLVLT---A 427 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~---~ 427 (465)
++..++...+.+.|++ +|.+.. ..+.|.++.++++ +..+..+.+...+++... +
T Consensus 248 ~~~~~na~~la~~L~~----~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-~~~~~~~~~~~l~~~~~~~s~G 322 (366)
T PRK07582 248 ARQCANALAVAELLAG----HPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-DAAAAERFVAASRLVVAATSFG 322 (366)
T ss_pred HHHHHHHHHHHHHHHh----CCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC-CHHHHHHHHHhCCcceecccCC
Confidence 5566666666666554 332221 1257889999985 445555555555655431 0
Q ss_pred ------------C---CCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 428 ------------G---KGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 428 ------------~---~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+ .++.+|+++.+...++.|+.+.++|+
T Consensus 323 ~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~ 364 (366)
T PRK07582 323 GVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD 364 (366)
T ss_pred CccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 1 13579999988766665555555543
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=157.21 Aligned_cols=284 Identities=14% Similarity=0.098 Sum_probs=176.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++....|+++|+++.+.+.+++++||++|+..++..+.. ++|+||+.++.|++.........
T Consensus 44 Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~-----------~GD~Vl~~~~~y~~t~~~~~~~~-- 110 (377)
T TIGR01324 44 YGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVK-----------AGDHVLMVDSAYEPTRYFCDIVL-- 110 (377)
T ss_pred ccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcC-----------CCCEEEEcCCCcHHHHHHHHHHH--
Confidence 34566777889999999999988999999999999999886642 68999999999987543211000
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..+.+++++++++ ++++|++|...+..|...+ +++|.++|+++|+++|+|++|. .|
T Consensus 111 -------~~~gi~v~~~d~~~~e~l~~~i~~-~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g 177 (377)
T TIGR01324 111 -------KRMGVDITYYDPLIGEDIATLIQP-NTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AG 177 (377)
T ss_pred -------HhcCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cc
Confidence 001112333444455889999875 4678888876666665544 9999999999999999999996 32
Q ss_pred CCCccccccccCCcccEEE--ecccCCC--ccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 294 RTGYLWAHEHYGIFPDIMT--LAKPLAG--GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t--~sK~lg~--G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
....+ .....|+++ ++|.++| +.-.|+++++++.++.+...........+|..+...+..++.+ .-.++
T Consensus 178 ~~~~p-----l~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl--~~R~~ 250 (377)
T TIGR01324 178 LLFKP-----LEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTL--GVRLK 250 (377)
T ss_pred cccCc-----cccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhH--HHHHH
Confidence 22221 123457765 5799986 3778999998887766542211222334565555555555433 12244
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEecC-C---hHHHHHHHHHCCce----
Q 012368 370 SVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFDV-S---ATPVVDACRDSGLL---- 423 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~~-~---~~~~~~~l~~~Gv~---- 423 (465)
+..++...+.+.|++ +|.+. ...+.|.++.+++.. . ..+|.+.|.--++-
T Consensus 251 ~~~~~a~~la~~L~~----~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG 326 (377)
T TIGR01324 251 QHQESSLAIAKWLSE----QPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWG 326 (377)
T ss_pred HHHHHHHHHHHHHHh----CCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCC
Confidence 444555455554443 33211 123668899999842 2 23455554432221
Q ss_pred -----Ee-ec------------CCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 424 -----VL-TA------------GKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 424 -----v~-~~------------~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+. +. -.++.+||++.+. +.+++++-|+++|+
T Consensus 327 ~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGlE----~~~dl~~dl~~al~ 375 (377)
T TIGR01324 327 GYESLALCNQPELGHRPNIKRNLEGPLIRVHIGLE----NVDDLKADLKAGFE 375 (377)
T ss_pred CccceeecCCCCCCHHHHHhccCCCCEEEEEeCCC----CHHHHHHHHHHHHh
Confidence 11 00 0135689987765 45556666666664
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-16 Score=153.24 Aligned_cols=306 Identities=13% Similarity=0.147 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
++..+++.+.+..... ....+...++++++++.++.+++++++||++|+.++++++. . .++++||+.
T Consensus 11 ~~e~~a~~~~~~~~~~---~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~--~--------~pGd~Viv~ 77 (376)
T TIGR02379 11 GQELEYIAEAISEGKL---SGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLD--I--------QPGDEVIMP 77 (376)
T ss_pred HHHHHHHHHHHHcCCc---cCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEEC
Confidence 4567888887765322 11245578999999999999999999999999998887541 1 268999999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+++|.+....+...+..+.+. +..++. + .-|++++++++++ ++++|+ |++++ |...+ +++|.++|
T Consensus 78 ~~t~~~~~~~~~~~G~~~v~v----d~d~~~-~--~~d~~~le~~i~~-~tk~Ii--p~~~~-G~~~d----~~~I~~la 142 (376)
T TIGR02379 78 SYTFVSTANAFVLRGAKIVFV----DIRPDT-M--NIDETLIESAITH-RTKAIV--PVHYA-GVACD----MDTIMALA 142 (376)
T ss_pred CCCcHHHHHHHHHcCCEEEEE----ecCCCc-C--CCCHHHHHHhcCc-CceEEE--EeCCC-CCccC----HHHHHHHH
Confidence 999987654444333222211 111111 0 0278999999975 456665 55544 44443 88999999
Q ss_pred HHhCCEEEEeccccCCC-CCCccccccccCCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCCC-C--------
Q 012368 277 DDAGALLVFDEVQCGLG-RTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYGD-H-------- 341 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~g-r~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~~-~-------- 341 (465)
++||++||.|++|+-.. ..|. ..+..-|+.+|| |.++.|.+.|+++.+ +++.+.++... +
T Consensus 143 ~~~~i~vIeDaa~~~g~~~~~~-----~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (376)
T TIGR02379 143 NKHQLFVIEDAAQGVMSTYKGR-----ALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFF 217 (376)
T ss_pred HHCCCEEEEECccccCCccCCc-----ccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCcccc
Confidence 99999999999987321 1121 223334788888 999888788988775 67777664321 1
Q ss_pred ------------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH----cCCCce-eeeccceEEEE
Q 012368 342 ------------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLA----RNPHVK-DVRGLGLIIGI 404 (465)
Q Consensus 342 ------------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~-~~~~~g~~~~i 404 (465)
+..+..+.+..+.+++.|+.+ ++..++-++..++..+.|..+.. ..+... .....-.++.+
T Consensus 218 ~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l--~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (376)
T TIGR02379 218 RGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQA--DRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYI 295 (376)
T ss_pred ccCCCcceeeeecccCCccHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEE
Confidence 112223445555555556543 33444455555555555544321 111110 11101112344
Q ss_pred EecC--ChHHHHHHHHHCCceEeec----CC---------------------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 405 EFDV--SATPVVDACRDSGLLVLTA----GK---------------------GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 405 ~~~~--~~~~~~~~l~~~Gv~v~~~----~~---------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.++. +..++.+.|.++||.+... .. .+.+.+=+....|++|++..++.|++++
T Consensus 296 ~~~~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 296 KLKDEDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred EECCcCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 4432 4678999999999987521 00 1123332234579999999999998764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-16 Score=157.73 Aligned_cols=166 Identities=20% Similarity=0.161 Sum_probs=122.5
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+++++++...+|+++|+++.+.+.+++++||++|+..++..+.. ++++||+.++.|++.........
T Consensus 51 ysr~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~-----------~Gd~Vl~~~~~y~~t~~~~~~~~-- 117 (418)
T TIGR01326 51 YSRLMNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQ-----------AGDNIVSSSYLYGGTYNLFKHTL-- 117 (418)
T ss_pred eECCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC-----------CCCEEEEECCCcHHHHHHHHHHH--
Confidence 45677788899999999999988899999999999999986652 68899999999977532211100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++.+|++++++++++ ++++|++|..++..|.+.+ +++|+++|++||+++|+||+|.. +
T Consensus 118 -------~~~G~~v~~v~~~d~~~l~~~l~~-~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~~-~ 184 (418)
T TIGR01326 118 -------KRLGIEVRFVDPDDPEEFEKAIDE-NTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFAT-P 184 (418)
T ss_pred -------HHcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCch-h
Confidence 011123445666789999999975 4677777776666666654 89999999999999999999852 1
Q ss_pred CCCccccccccCCcccEE--EecccCCC-ccceeeEEeCH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVTE 330 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~~ 330 (465)
.. .......+|++ +++|.+++ |+++|++++++
T Consensus 185 ~~-----~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 185 YL-----CRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred hc-----CCchhcCCeEEEECccccccCCccceEEEEEec
Confidence 11 11122345766 67899997 89999998864
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-15 Score=145.72 Aligned_cols=311 Identities=21% Similarity=0.202 Sum_probs=205.3
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
-+|+|++|+.+.+-. |. ..-......++.+.|...++ .+-++++.||+-|++.++..+.. +++
T Consensus 16 v~~~V~~am~~~~~~--h~-s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~-----------pgd 81 (383)
T COG0075 16 VPPRVLLAMARPMVG--HR-SPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE-----------PGD 81 (383)
T ss_pred CCHHHHHHhcCCCCC--CC-CHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC-----------CCC
Confidence 457777777664321 11 11112336677777777777 25677889999999999986662 789
Q ss_pred eEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceE--eeC---CCHHHHHhhcC-CCCeEEEEEcccCCCCCcccCC
Q 012368 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF--VEY---GNIEATRKLIQ-PGKTAAVFVEPIQGEGGIYSAT 265 (465)
Q Consensus 192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~d~~~le~~l~-~~~~a~vi~ep~~~~~G~~~~~ 265 (465)
+|++...+..|.-..-+.-. +...+.. .++ -|+++++++|+ ..++.+|.+-.+-.++|++.|
T Consensus 82 kVLv~~nG~FG~R~~~ia~~-----------~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp- 149 (383)
T COG0075 82 KVLVVVNGKFGERFAEIAER-----------YGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP- 149 (383)
T ss_pred eEEEEeCChHHHHHHHHHHH-----------hCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc-
Confidence 99999998888764332211 0011111 111 28999999998 446778888777778888887
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCCccceeeEEeCHHHHhhccCCC---
Q 012368 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVTEKVASAINYGD--- 340 (465)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~~~i~~~~~~~~--- 340 (465)
+++|.++|++||+++|+|-|-+ +| |..+-.+.|++ |+++- -|++++.-.+|++..+++..+.+....
T Consensus 150 ---l~~I~~~~k~~g~l~iVDaVsS-~G--g~~~~vd~wgi--Dv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~ 221 (383)
T COG0075 150 ---LKEIAKAAKEHGALLIVDAVSS-LG--GEPLKVDEWGI--DVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPS 221 (383)
T ss_pred ---HHHHHHHHHHcCCEEEEEeccc-CC--CcccchhhcCc--cEEEecCchhccCCCccceeEECHHHHHHHhcCCCCc
Confidence 9999999999999999999876 54 44556666775 55543 399997556788888988877765321
Q ss_pred ---------------CcCCCCChHHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceE
Q 012368 341 ---------------HGSTFAGSPLVCNAAIAVLDKISNPA---FLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLI 401 (465)
Q Consensus 341 ---------------~~~t~~~~~~~~~aa~a~L~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~ 401 (465)
....|..+.-...|..++|+.+.++. .+++-+++.+.+++.++++ .+..+... .....+
T Consensus 222 ~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al--Gl~~~~~~~~~s~tv 299 (383)
T COG0075 222 FYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL--GLELFADPERRSPTV 299 (383)
T ss_pred eeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCccccCcccCCCce
Confidence 12233444455667778898886654 4455555566666666554 22222211 222344
Q ss_pred EEEEec--CChHHHHHHHHHC-CceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 402 IGIEFD--VSATPVVDACRDS-GLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 402 ~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..+..+ .+..++...++++ |+.+.++.. +.++||...-..+.+++..++.+|+.+|.++.
T Consensus 300 ta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 300 TAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred EEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 445543 2344444466655 888776532 57899987778899999999999999998763
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=150.87 Aligned_cols=237 Identities=15% Similarity=0.108 Sum_probs=151.7
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++...+|+++|+++.+.+.+++++||++|+..++..... ++|+||+.++.|.+........
T Consensus 55 Y~r~~npt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~-----------~GD~Vvv~~~~Y~~t~~l~~~~--- 120 (394)
T PRK09028 55 YGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLK-----------AGDHLLMVDSCYEPTRDLCDKI--- 120 (394)
T ss_pred ecCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-----------CCCEEEEECCCcHHHHHHHHHh---
Confidence 34445566779999999988877899999999999998876542 6899999999996665321110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.......+.+++..+.+.+++++++ ++++|++|...+..|.+.+ +++|.++|+++|+++|+|++|...
T Consensus 121 ------l~~~Gi~v~~v~~~~~e~l~~~l~~-~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~p- 188 (394)
T PRK09028 121 ------LKGFGIETTYYDPMIGEGIRELIRP-NTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWASP- 188 (394)
T ss_pred ------hhhcceEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCcccc-
Confidence 0011123344555577889999975 5678888876665555443 999999999999999999998631
Q ss_pred CCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
. .+.-.....|+++ .+|+++| | .-.|+++.++++.+.+...........+|..+....-.|+.+ .-.++
T Consensus 189 ---~--~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL--~lR~~ 261 (394)
T PRK09028 189 ---I--NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTL--GVRLA 261 (394)
T ss_pred ---c--cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHHH
Confidence 1 1222234467764 5699987 4 778888777776665542111112235666665554444422 12234
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEec
Q 012368 370 SVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFD 407 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~ 407 (465)
+..++...+.+.| +++|.+. ...+.|.++.|+++
T Consensus 262 ~~~~na~~la~~L----~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 313 (394)
T PRK09028 262 QHEKNALKVANWL----ATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK 313 (394)
T ss_pred HHHHHHHHHHHHH----hcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence 4444444444444 4444222 12466889999984
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-15 Score=151.35 Aligned_cols=237 Identities=17% Similarity=0.207 Sum_probs=150.1
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..++++...+|+++|+++.+.+..+.++||++|+..+++.+.. ++++||+.++.|.+.........
T Consensus 55 Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~-----------~Gd~Vl~~~~~y~~t~~~~~~~~-- 121 (388)
T PRK07811 55 YARTGNPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLR-----------PGDHIVIPNDAYGGTFRLIDKVF-- 121 (388)
T ss_pred ccCCCCccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchHHHHHHHHhC--
Confidence 34566677889999999999866677778999999999987652 68999999999965432211110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..|++++++++++ ++++|+++..++..|...+ +++|.++|+++|+++|+||+|...
T Consensus 122 -------~~~gi~~~~~d~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~- 188 (388)
T PRK07811 122 -------TRWGVEYTPVDLSDLDAVRAAITP-RTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASP- 188 (388)
T ss_pred -------cCCCeEEEEeCCCCHHHHHHhcCc-CCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCcc-
Confidence 011123345555689999999976 4567766554444455444 999999999999999999998643
Q ss_pred CCCccccccccCCcccEE--EecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..+.. .....|++ +++|.++| | .+.|+++++ +++.+.+...........+|+.+..++..|+.+ +...
T Consensus 189 ~~~~p-----~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl--~~R~ 261 (388)
T PRK07811 189 YLQQP-----LALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL--AVRM 261 (388)
T ss_pred ccCCc-----hhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHH
Confidence 22221 12234665 56799986 4 678988875 666665542222222334566554444444422 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEec
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFD 407 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~ 407 (465)
++..++...+.+.|+ .+|.+. ...|.|.++.++++
T Consensus 262 ~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 314 (388)
T PRK07811 262 DRHSENAEAVAEFLA----GHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA 314 (388)
T ss_pred HHHHHHHHHHHHHHH----hCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence 444555555555544 444221 12467889999994
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-16 Score=148.00 Aligned_cols=328 Identities=16% Similarity=0.180 Sum_probs=191.2
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CC-CCCHH---HHHHHHHHHhhcC--CCeEEecCCHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NM-YYSIP---QIELAKRLVACSF--ADRVFFSNTGTEANEA 170 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~-~~~~~---~~~la~~l~~~~~--~~~v~~~~sG~eA~~~ 170 (465)
.-|+|..+ .|-.+|.|.+|+.+.+......+ .. +.... .++.++.+++..+ ..+|+||+++||++.+
T Consensus 44 ~vyld~~a------t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl 117 (428)
T KOG1549|consen 44 PVYLDNQA------TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL 117 (428)
T ss_pred cEEEecCc------CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence 45788665 45588999999999877642211 11 22222 5566777888887 4569999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCC
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG 245 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~ 245 (465)
+++..-.+.+. + .+..||.+.-.|.........+-. .. ..+.++|.+ |++.+++.|++
T Consensus 118 vl~~v~~~~~~-~-----~~k~iitl~~eH~~v~~s~~~l~~-~g---------~~Vt~lpv~~~~~~d~~~~~~~i~~- 180 (428)
T KOG1549|consen 118 VLKGVARFFGD-K-----TKKHIITLQTEHPCVLDSCRALQE-EG---------LEVTYLPVEDSGLVDISKLREAIRS- 180 (428)
T ss_pred HHHHhhccccc-c-----ccceEEEecccCcchhHHHHHHHh-cC---------eEEEEeccCccccccHHHHHHhcCC-
Confidence 99865543321 0 122666666555444333332211 11 122333332 78999999986
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCC-ccc
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAG-GLP 322 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~-G~~ 322 (465)
++.+|.++.++++.|+..| +++|.++|+++++.+++|-+|. .|.. ..+.-++.+|+.+++ |++|. |
T Consensus 181 ~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-vG~i----~vDV~eln~D~~s~s~HK~ygp~~-- 249 (428)
T KOG1549|consen 181 KTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-VGKI----PVDVQELNADFLSISAHKIYGPPG-- 249 (428)
T ss_pred CceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh-cCCc----cccHHHcCchheeeecccccCCCc--
Confidence 7899999999999999998 9999999999999999999986 4322 355556778988876 98875 4
Q ss_pred eeeEEeCHH---HH--hhccCCC-----CcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHc--
Q 012368 323 IGAALVTEK---VA--SAINYGD-----HGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLAR-- 388 (465)
Q Consensus 323 iG~v~~~~~---i~--~~~~~~~-----~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~-- 388 (465)
+|++++++. +. -.+..+. ..+|- +.+.+...-++.+.... ........+....+...+......
T Consensus 250 iGaLYvr~~~~~~~~~p~~~GGgq~r~~rsGT~--~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~ 327 (428)
T KOG1549|consen 250 IGALYVRRKRPRLRVEPPLSGGGQERGLRSGTV--ATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQSLPEVT 327 (428)
T ss_pred ceEEEEccCCCcccccCcccCCccccccccCCc--CchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhCchhh
Confidence 999999861 11 1111111 11221 22233333334443322 122223333444443333221110
Q ss_pred -CCCceeeeccceEEEEEe--cC------Ch-------------HHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHH
Q 012368 389 -NPHVKDVRGLGLIIGIEF--DV------SA-------------TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQEL 446 (465)
Q Consensus 389 -~~~~~~~~~~g~~~~i~~--~~------~~-------------~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i 446 (465)
.+...........+.+.. +. +. .+....|+..|+-.... ...+||++....+++|+
T Consensus 328 ~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~--~~~iRis~G~y~t~~di 405 (428)
T KOG1549|consen 328 LNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLA--HSSIRISIGRYTTEEDI 405 (428)
T ss_pred ccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhh--cceeEEeeeeeCcHHHH
Confidence 010000011112222221 00 00 01122344455532222 25799999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 012368 447 DQAVEILCKTLPVLDSN 463 (465)
Q Consensus 447 ~~~l~~l~~~l~~~~~~ 463 (465)
+.+++.+.+.+..+..+
T Consensus 406 ~~~~~~i~~~v~~~~~~ 422 (428)
T KOG1549|consen 406 DYLVDAIKKLVSLLREM 422 (428)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999988776543
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=151.44 Aligned_cols=236 Identities=16% Similarity=0.092 Sum_probs=150.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+|++++++..+.+.+++++||++|+..++..... +++.|++..+.|++.......+.
T Consensus 47 y~r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~-----------~GD~Vlv~~~~y~~~~~~~~~~~-- 113 (385)
T PRK08574 47 YSREENPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLK-----------AGDRVVLPMEAYGTTLRLLKSLE-- 113 (385)
T ss_pred EECCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHHHHHHHhh--
Confidence 45566777889999999999988889999999999998886542 68999999999976543221110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.....+.+++ .|++++++++++.++++|+++..+++.|.+.+ +++|.++|+++|+++|+|+++.. +
T Consensus 114 --------~~g~~v~~~~-~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~-~ 179 (385)
T PRK08574 114 --------KFGVKVVLAY-PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFAT-P 179 (385)
T ss_pred --------ccCcEEEEEC-CCHHHHHHhcCccCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCc-c
Confidence 0011122222 37899999997535777778776666676655 88999999999999999999852 1
Q ss_pred CCCccccccccCCcccEE--EecccCCC-ccc-eeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLP-IGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~-iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..... . ..| .|++ +++|+++| |-. .|++++ ++++.+.+...........+|+.++.++..|+.+ +...
T Consensus 180 ~~~~~--l-~~G--aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL--~~R~ 252 (385)
T PRK08574 180 LLYRP--L-RHG--ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTL--EVRF 252 (385)
T ss_pred ccCCh--h-hhC--CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHH
Confidence 11111 1 123 3555 57799986 533 464554 6777766543222123345676666666555533 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcee------------------e--eccceEEEEEec
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKD------------------V--RGLGLIIGIEFD 407 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~--~~~g~~~~i~~~ 407 (465)
++..++..++.+.|+ .+|.+.. . .+.|.++.|++.
T Consensus 253 ~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~ 307 (385)
T PRK08574 253 ERQCRNAMAIAEFLS----EHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVK 307 (385)
T ss_pred HHHHHHHHHHHHHHH----cCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeC
Confidence 444445555544443 3442211 1 257889999984
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-16 Score=152.64 Aligned_cols=289 Identities=13% Similarity=0.096 Sum_probs=166.0
Q ss_pred CCCCHHHHHHHHHHHhhcccccCC-CC------CHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 012368 113 GHGDADWIKAVVDQANVLTHVSNM-YY------SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSN 183 (465)
Q Consensus 113 Gh~~p~v~~a~~~~~~~~~~~~~~-~~------~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~ 183 (465)
|..++.|++++.+.+......+.. .. ....++++++|+++++ .+.|+|++|+++|+..+++.+.....
T Consensus 8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~--- 84 (353)
T TIGR03235 8 TPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGE--- 84 (353)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcc---
Confidence 457899999999887542111111 11 1225678889999887 56899999999999999886653210
Q ss_pred CCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 184 PDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 184 ~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
.++ +.|++.. ..|....................+...+.. .|++++++++++ ++++|+++.+++..|.+
T Consensus 85 ----~~g~~~vi~~~-~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~----~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~ 154 (353)
T TIGR03235 85 ----QKGKKHIITSA-IEHPAVLEPIRALERNGFTVTYLPVDESGR----IDVDELADAIRP-DTLLVSIMHVNNETGSI 154 (353)
T ss_pred ----cCCCCeeeEcc-cccHHHHHHHHHHHhcCCEEEEEccCCCCc----CCHHHHHHhCCC-CCEEEEEEcccCCceec
Confidence 023 4555544 444433222111000000000011111111 278999999975 46777777777777877
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhh--ccC
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASA--INY 338 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~--~~~ 338 (465)
.+ +++|.++|+++|+++|+|+++. +|.. . .+.....+|++++| |+++ ...+|+++++++.... +.+
T Consensus 155 ~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~--~--~~~~~~~~D~~~~s~~K~~g-p~g~g~l~~~~~~~~~~~~~~ 224 (353)
T TIGR03235 155 QP----IREIAEVLEAHEAFFHVDAAQV-VGKI--T--VDLSADRIDLISCSGHKIYG-PKGIGALVIRKRGKPKAPLKP 224 (353)
T ss_pred cC----HHHHHHHHHHcCCEEEEEchhh-cCCc--c--ccccccCCCEEEeehhhcCC-CCceEEEEEccCcccccccCc
Confidence 66 8999999999999999999986 4322 1 22222347888776 9753 2347899888774322 222
Q ss_pred CCC-------cCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEec-
Q 012368 339 GDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFD- 407 (465)
Q Consensus 339 ~~~-------~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~- 407 (465)
... ......++....+..++++.+.+ +...++++++.+++++.|++. .+...... .....+..+.++
T Consensus 225 ~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~--g~~~~~~~~~~~~~i~~~~~~~ 302 (353)
T TIGR03235 225 IMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL--GVKLNGDPAETIPHILNFSIDG 302 (353)
T ss_pred eeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC--CeEEeCCcccccCCEEEEEeCC
Confidence 111 01223455666666677776532 344555666666666555431 11111111 112334555543
Q ss_pred CChHHHHHHHHHCCceEeec
Q 012368 408 VSATPVVDACRDSGLLVLTA 427 (465)
Q Consensus 408 ~~~~~~~~~l~~~Gv~v~~~ 427 (465)
.+..++.+.|. +||.+.++
T Consensus 303 ~~~~~v~~~L~-~~i~v~~g 321 (353)
T TIGR03235 303 VNSEALIVNLR-ADAAVSTG 321 (353)
T ss_pred cCHHHHHHHHh-CCeEEEch
Confidence 45667777875 58888765
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-16 Score=153.54 Aligned_cols=235 Identities=15% Similarity=0.116 Sum_probs=149.7
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+.+++++...+|+++|+++.+.+.++.++||++|+.+++.++. ++|+||+..+.|++.........
T Consensus 47 ~Y~R~~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~~l~------------~GD~VI~~~~~yg~~~~~~~~~~- 113 (364)
T PRK07269 47 DYTRTKNPTRAKLEETLAAIESADYALATSSGMSAIVLAFSVFP------------VGSKVVAVRDLYGGSFRWFNQQE- 113 (364)
T ss_pred ceeCCCCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhC------------CCCEEEEecCCcCchHHHHHHHH-
Confidence 34667777789999999999999999999999999999885322 68999999998865442111100
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
+. .++...-..|+++++++++++ +++|++|..++..|...+ +++|+++|+++|+++|+||++...
T Consensus 114 ---------~~-~~~~~~~~~d~~~l~~~i~~~-TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~~ 178 (364)
T PRK07269 114 ---------KE-GRFHFTYANTEEELIAAIEED-TDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYSP 178 (364)
T ss_pred ---------hc-CcEEEEecCCHHHHHHhcCcC-ceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 00 011111123899999999754 556655554444455444 999999999999999999996421
Q ss_pred CCCCccccccccCCcccEEEe--cccCCC-c-cceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 293 GRTGYLWAHEHYGIFPDIMTL--AKPLAG-G-LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~--sK~lg~-G-~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
.. ....+...|++++ +|.++| | .-.|++++ ++++.+.+...........+|+.++.++..|+.+ +..
T Consensus 179 -~~-----~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL--~~r 250 (364)
T PRK07269 179 -IY-----QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTL--SLR 250 (364)
T ss_pred -cc-----CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHH
Confidence 11 1222345677765 599986 4 44577777 4667666642111112345777777666666532 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCce--eeeccceEEEEEec
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVK--DVRGLGLIIGIEFD 407 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~g~~~~i~~~ 407 (465)
+++.+++...+ .+.++.+|.+. ..++.|.++.|++.
T Consensus 251 ~~~~~~na~~~----a~~L~~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 251 MERSTANAQEV----VAFLKKSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HHHHHHHHHHH----HHHHHhCCCccEEeCCCcCcEEEEEEC
Confidence 33444444444 44455667433 23678999999884
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-15 Score=152.39 Aligned_cols=166 Identities=23% Similarity=0.243 Sum_probs=119.5
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+...+++...+|+++|++..+.+..++++||++|+..+++.+.. ++++||+.++.|++........
T Consensus 51 ~y~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~-----------~Gd~Vl~~~~~Y~~t~~~~~~~-- 117 (425)
T PRK06084 51 IYTRIMNPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAE-----------AGDNIVSVAKLYGGTYNLLAHT-- 117 (425)
T ss_pred cccCCCCchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhC-----------CCCEEEEeCCCcchHHHHHHHh--
Confidence 345566777889999999999877788999999999999987652 6889999999998644322111
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
.......+.+++..|++++++++++ ++++|++++.++..|.+.+ +++|.++|++||+++|+|+++..
T Consensus 118 -------l~~~gi~v~~~d~~d~e~le~ai~~-~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a~- 184 (425)
T PRK06084 118 -------LPRIGIETRFAAHDDIAALEALIDE-RTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVAT- 184 (425)
T ss_pred -------cccceeEEEEECCCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-
Confidence 0011123445666799999999975 4677777776666676655 89999999999999999999862
Q ss_pred CCCCccccccccCCcccEE--EecccCCC-ccceeeEEeC
Q 012368 293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVT 329 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~ 329 (465)
+... .......|++ +++|.++| |.++|.+++.
T Consensus 185 ~~~~-----~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 185 PVLC-----RPFEHGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred cccC-----ChhhcCCCEEEECchhcccccccceeEEEEe
Confidence 1211 1122346666 56799997 6777766653
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=151.94 Aligned_cols=287 Identities=16% Similarity=0.131 Sum_probs=171.1
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++...+++++|+++.+.+..++++||+.|+..++..+. ++++||+.++.|++.........
T Consensus 48 y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~~l~------------~Gd~Vlv~~~~y~~~~~~~~~~~-- 113 (390)
T PRK08064 48 YSRSGNPTREALEDIIAELEGGTKGFAFASGMAAISTAFLLLS------------KGDHVLISEDVYGGTYRMITEVL-- 113 (390)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHHHhC------------CCCEEEEccCccchHHHHHHHHH--
Confidence 3445567788999999999986566777899999988875222 58899999999976543211110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|+++|+++|+|++|..+.
T Consensus 114 -------~~~G~~v~~v~~~d~~~l~~~l~~-~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~ 181 (390)
T PRK08064 114 -------SRFGIEHTFVDMTNLEEVAQNIKP-NTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTPL 181 (390)
T ss_pred -------HHcCCEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCccc
Confidence 011233456666789999999975 4566666655555566554 8999999999999999999986431
Q ss_pred CCCccccccccCCcccEE--EecccCCC--ccceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
.... . .++ .|++ +++|.++| |.-.|+++++ +++++.+...........+|..+..+...++.+ +..+
T Consensus 182 -~~~~--~-~~g--~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl--~~R~ 253 (390)
T PRK08064 182 -LQKP--L-DLG--ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTL--HVRL 253 (390)
T ss_pred -ccCc--h-hhC--CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHH
Confidence 1111 1 123 4665 56799975 3456766664 677777754322222233444444332222211 2233
Q ss_pred HHHHHHHHHHHHHHHHHHH----cCCCce----------eeeccceEEEEEecCChHHHHHHHHHCCceE---eec----
Q 012368 369 ASVSKKGHYFKETLKQKLA----RNPHVK----------DVRGLGLIIGIEFDVSATPVVDACRDSGLLV---LTA---- 427 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~----~~~~~~----------~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v---~~~---- 427 (465)
++..++...+.+.|++... .+|... ...+.|.++.++++ ...+..+.+-..+++. +-+
T Consensus 254 ~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~-~~~~~~~f~~~l~l~~~~~s~G~~~s 332 (390)
T PRK08064 254 EHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ-SEEAVRQFVSHVKLPVFAVSLGAVES 332 (390)
T ss_pred HHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC-CHHHHHHHHHhCCcceEcccCCCCcc
Confidence 4444455555444443210 011110 23467889999984 2333444443445421 100
Q ss_pred ---------------------C-CCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 428 ---------------------G-KGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 428 ---------------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
| .++.+|+++.+..+++.++.+.++|++
T Consensus 333 l~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~ 382 (390)
T PRK08064 333 ILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSY 382 (390)
T ss_pred eeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 1 136799999988777777766666654
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=151.85 Aligned_cols=284 Identities=17% Similarity=0.200 Sum_probs=173.2
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+.....+...+|+++++++++.+.+++++||+.|+..++.+ . + ++++||+.++.|++.........
T Consensus 41 Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~l-l---~--------~Gd~Vl~~~~~y~~~~~~~~~~~-- 106 (378)
T TIGR01329 41 YTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDVITRL-L---N--------NGDEIIAGDDLYGGTDRLLTQVV-- 106 (378)
T ss_pred cCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHH-h---C--------CCCEEEEcCCCchHHHHHHHHHH--
Confidence 34445667889999999999888888899999998876652 2 1 68899999998865432111000
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..|++++++++++ ++++|++|...+..|.+.+ +++|.++|++||+++|+|+++...
T Consensus 107 -------~~~G~~v~~vd~~d~~~le~~i~~-~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~~- 173 (378)
T TIGR01329 107 -------PRSGVVVVHVDTTDLDKVKAALGP-KTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMSP- 173 (378)
T ss_pred -------HHcCcEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccc-
Confidence 011133455666689999999975 5677777766666666655 999999999999999999997421
Q ss_pred CCCccccccccCCcccEE--EecccCCC--ccceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..... . +...|++ +++|.++| +...|+++++ +++.+.+.+.........+|..+..+...++.+ +..+
T Consensus 174 ~~~~~--l---~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl--~~R~ 246 (378)
T TIGR01329 174 LLCNP--L---ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL--AIRI 246 (378)
T ss_pred ccCCh--h---hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH--HHHH
Confidence 11111 1 2234666 45699986 3678998874 455455543222122334555443333222211 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEec-CC-hHHHHHHHHHCCceEeecC
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFD-VS-ATPVVDACRDSGLLVLTAG 428 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~-~~-~~~~~~~l~~~Gv~v~~~~ 428 (465)
++-.++...+.+.|+ ++|.+. ...+.|.++.|++. .. +.+|.+.|..-++.++.++
T Consensus 247 e~~~~na~~la~~L~----~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~ 322 (378)
T TIGR01329 247 EKQQENARAIAMFLS----THPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGS 322 (378)
T ss_pred HHHHHHHHHHHHHHH----hCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCC
Confidence 444555555555444 333111 12356788999983 12 4467777744343332211
Q ss_pred --------------------------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 429 --------------------------KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 429 --------------------------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++.+|+++.+. +.+.+++-|+++|++
T Consensus 323 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 323 VNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIE----DVDDLISDLDIAFVT 375 (378)
T ss_pred CCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence 135789987664 566667777777654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-15 Score=148.76 Aligned_cols=238 Identities=14% Similarity=0.074 Sum_probs=149.0
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.++...++....|+++|+...+.+..++++||++|+..++.... .++|+||+.++.|+++........
T Consensus 57 ~YsR~gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all-----------~~GD~Vlv~~~~Y~~~~~l~~~~l- 124 (395)
T PRK05967 57 TYGTRGTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFL-----------SPGDHALIVDSVYYPTRHFCDTML- 124 (395)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhc-----------CCCCEEEEccCCcHHHHHHHHHHH-
Confidence 34566778889999999988775556677779999999887654 278999999999987653221110
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
......+.+++..+.+.+++++++ ++++|++|...++.+.+ ..+++|+++|+++|+++|+|+++...
T Consensus 125 --------~~~Gi~v~~vd~~~~e~l~~al~~-~TklV~lesPsNP~l~v----~dl~~I~~la~~~g~~vvVD~t~a~p 191 (395)
T PRK05967 125 --------KRLGVEVEYYDPEIGAGIAKLMRP-NTKVVHTEAPGSNTFEM----QDIPAIAEAAHRHGAIVMMDNTWATP 191 (395)
T ss_pred --------HhcCeEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCcH----HHHHHHHHHHHHhCCEEEEECCccCc
Confidence 011123445555567889999975 46788888544444433 34999999999999999999998643
Q ss_pred CCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
. .+.......|++ +.+|.++| | .-.|+++.++++.+.+........-..+|..+...+..|+.+ +-.+
T Consensus 192 ~------~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl--~lR~ 263 (395)
T PRK05967 192 L------YFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTM--GIRL 263 (395)
T ss_pred e------ecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccH--HHHH
Confidence 1 122222345665 56799987 4 778888888776555532111111234566554444333322 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEec
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFD 407 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~ 407 (465)
++..++...+.+.| +.+|.+. ...+.|.++.|++.
T Consensus 264 ~~~~~na~~lA~~L----~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK05967 264 EHHRKSALEIARWL----EGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLA 316 (395)
T ss_pred HHHHHHHHHHHHHH----HhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 33344444444443 3444221 12467889999984
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=144.98 Aligned_cols=302 Identities=12% Similarity=0.098 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
++-.+++.+.+..... ....+...++++++++.++.+++++++||++|+.+++.++. . .++++||+.
T Consensus 11 ~~~~~~~~~~l~~~~~---~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~--~--------~~Gd~Viv~ 77 (375)
T PRK11706 11 GTELDYIQQAMSSGKL---CGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLD--I--------QPGDEVIMP 77 (375)
T ss_pred HHHHHHHHHHHHcCCc---cCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhC--C--------CCCCEEEEC
Confidence 3446677777665321 11235578899999999998999999999999988877542 1 168999999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
.++|......+...+..+.+. +..++. + ..|++++++++++ ++++|++. +. .|...+ +++|.++|
T Consensus 78 ~~t~~~~~~~~~~~G~~~v~~----d~d~~~-~--~~d~~~le~~i~~-~tk~i~~~--~~-~G~~~~----~~~i~~la 142 (375)
T PRK11706 78 SYTFVSTANAFVLRGAKIVFV----DIRPDT-M--NIDETLIEAAITP-KTRAIVPV--HY-AGVACE----MDTIMALA 142 (375)
T ss_pred CCCcHHHHHHHHHcCCEEEEE----ecCCCc-C--CcCHHHHHHhcCC-CCeEEEEe--CC-CCCccC----HHHHHHHH
Confidence 999987765544433322211 111111 0 1278999999976 45555543 22 454433 88999999
Q ss_pred HHhCCEEEEeccccCCCC-CCccccccccCCcccEEEec----ccCCCccceeeEEeCHHHHhhccCCC-C---------
Q 012368 277 DDAGALLVFDEVQCGLGR-TGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVTEKVASAINYGD-H--------- 341 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr-~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~~~i~~~~~~~~-~--------- 341 (465)
++||+++|.|++|+-+.. .|.. .+-.-|+.+|| |.++.|.+.+++..++++.+.+.... +
T Consensus 143 ~~~~i~vIeD~a~a~g~~~~~~~-----~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 217 (375)
T PRK11706 143 KKHNLFVVEDAAQGVMSTYKGRA-----LGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFR 217 (375)
T ss_pred HHcCCEEEEECccccccccCCee-----eecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhc
Confidence 999999999999973321 1211 12223777888 99987777777777788776443211 0
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC---Cce--eee----ccceE
Q 012368 342 -----------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP---HVK--DVR----GLGLI 401 (465)
Q Consensus 342 -----------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~--~~~----~~g~~ 401 (465)
+..+..+.+..+.+.+-|+.+ +...++-+++.+++.+.|. .++ .+. ..+ ....+
T Consensus 218 ~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~----~~~~~~~~~~~~~~~~~~~~~~~ 291 (375)
T PRK11706 218 GQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALA----PLAEAGRIELPSIPDDCKHNAHM 291 (375)
T ss_pred cCCCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc----CCCcCCeeecCCCCCCCceeeEE
Confidence 111222334444444445432 2333334444444444443 332 111 011 11224
Q ss_pred EEEEec--CChHHHHHHHHHCCceEeec----C------------C---------CCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 402 IGIEFD--VSATPVVDACRDSGLLVLTA----G------------K---------GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 402 ~~i~~~--~~~~~~~~~l~~~Gv~v~~~----~------------~---------~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+++.++ ....++.+.|.++||.+... . . .+.+.+=+....+++|++..++.|+
T Consensus 292 ~~~~~~~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~ 371 (375)
T PRK11706 292 FYIKLRDLEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTIL 371 (375)
T ss_pred EEEEECCcCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHH
Confidence 445443 34678999999999986421 0 0 1123332234468999999999998
Q ss_pred HHH
Q 012368 455 KTL 457 (465)
Q Consensus 455 ~~l 457 (465)
+++
T Consensus 372 ~~~ 374 (375)
T PRK11706 372 EFF 374 (375)
T ss_pred HHh
Confidence 764
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-14 Score=146.85 Aligned_cols=313 Identities=14% Similarity=0.108 Sum_probs=183.2
Q ss_pred CCHHHHHHHHHHH-hhccccc---CC-CCCHHHHHHHH----HHHhhcC-CC-eEEe---cCCHHHHHHHHHHHHHHHhh
Q 012368 115 GDADWIKAVVDQA-NVLTHVS---NM-YYSIPQIELAK----RLVACSF-AD-RVFF---SNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 115 ~~p~v~~a~~~~~-~~~~~~~---~~-~~~~~~~~la~----~l~~~~~-~~-~v~~---~~sG~eA~~~al~~a~~~t~ 180 (465)
.+|.|++|+...+ .++..++ .. ..+....++++ +..+.++ .+ .+.+ .+||+.||..++..+..
T Consensus 46 ~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~--- 122 (475)
T PLN03226 46 TSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQ--- 122 (475)
T ss_pred CCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCC---
Confidence 5688999998888 4433221 11 12334444433 2344455 22 2222 38999999999987652
Q ss_pred hcCCCCCCCCceEEEEcCCc-----ccCccccccccCCCCcCCCCCCCCCCceEeeCC------CHHHHHhhcCCCCeEE
Q 012368 181 HSNPDSKEPATEFVSFTNSF-----HGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG------NIEATRKLIQPGKTAA 249 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~y-----hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~a~ 249 (465)
++|+|+..+..- |++......++....+. ....++++ |+++|++++...+++.
T Consensus 123 --------pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~--------~~~~y~~~~~~g~iD~d~Le~~l~~~~pkl 186 (475)
T PLN03226 123 --------PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYF--------ESMPYRLDESTGLIDYDKLEKKAMLFRPKL 186 (475)
T ss_pred --------CCCEEEECCCCcCcchhhhhhhcccccccceEEE--------EeeeeeecCCCCCcCHHHHHHHHhhcCCeE
Confidence 688898855322 33322111111111000 00011223 8999999987434555
Q ss_pred EEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeE
Q 012368 250 VFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAA 326 (465)
Q Consensus 250 vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v 326 (465)
|++ +.+.+. ..+ +++|+++|++||++|++|++|. +|..+........+ ..|++ |++|+|.|.. .|++
T Consensus 187 Iv~~~S~~s~---~~D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p~~-~~Div~~t~hK~L~GP~-Gg~I 256 (475)
T PLN03226 187 IIAGASAYPR---DWD----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAASPFE-YCDVVTTTTHKSLRGPR-GGMI 256 (475)
T ss_pred EEEecCcCCC---ccC----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCCCCCC-CCeEEEecCcccccCCC-ceEE
Confidence 555 554433 222 7799999999999999999986 44333221111111 35766 4669996532 3777
Q ss_pred EeCHHHH-----------h---hccCCC-CcCCCCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHc
Q 012368 327 LVTEKVA-----------S---AINYGD-HGSTFAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 327 ~~~~~i~-----------~---~~~~~~-~~~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
++++++. + .+.... ...+-+.++...++..++|+.+.+. .+.+++.++.++|++.|.+. .
T Consensus 257 ~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~--G 334 (475)
T PLN03226 257 FFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK--G 334 (475)
T ss_pred EEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC--C
Confidence 7777543 2 122111 1112234566667777888887543 36778888888888877663 3
Q ss_pred CCCceeeeccceEEEEEec---CChHHHHHHHHHCCceEeecC--------CCCEEEE----ecCCCCcHHHHHHHHHHH
Q 012368 389 NPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAG--------KGNVVRL----VPPLIISEQELDQAVEIL 453 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~--------~~~~lRi----~~~~~~t~e~i~~~l~~l 453 (465)
+.++..- ....+..+++. ....++.+.|.+.||.+.... ....+|+ -....++++|++++.+.|
T Consensus 335 ~~l~~~~-t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i 413 (475)
T PLN03226 335 YKLVTGG-TDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFL 413 (475)
T ss_pred CEEEcCC-CCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHH
Confidence 3222110 12345556662 356678888889999886431 1244787 335678999999999999
Q ss_pred HHHHHH
Q 012368 454 CKTLPV 459 (465)
Q Consensus 454 ~~~l~~ 459 (465)
.++++.
T Consensus 414 ~~~~~~ 419 (475)
T PLN03226 414 HRAVTI 419 (475)
T ss_pred HHHHHH
Confidence 999874
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=144.99 Aligned_cols=301 Identities=15% Similarity=0.138 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
++-.+++.+.+..... +..+...+|+++++++++.+.+++++||++|+.++++.+. . .++++||+.
T Consensus 14 ~~e~~~~~~~l~~~~~----~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~--~--------~~Gd~Viv~ 79 (379)
T PRK11658 14 DEELAAVKEVLRSGWI----TTGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALG--I--------GPGDEVITP 79 (379)
T ss_pred HHHHHHHHHHHHcCCc----cCCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcC--C--------CCCCEEEEC
Confidence 4567788877765321 2345578999999999998889999999999999998652 1 168999999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+++|.+....+...+..+.+. +..++.. .-|++++++++++ ++++|+ |++. .|...+ +++|.++|
T Consensus 80 ~~~~~~~~~~~~~~G~~~v~v----d~~~~~~---~~d~~~l~~~i~~-~tkav~--~~~~-~G~~~d----~~~i~~~a 144 (379)
T PRK11658 80 SLTWVSTLNMIVLLGATPVMV----DVDRDTL---MVTPEAIEAAITP-RTKAII--PVHY-AGAPAD----LDAIRAIG 144 (379)
T ss_pred CCcHHHHHHHHHHcCCEEEEE----ecCCCcC---CcCHHHHHHhccc-CCeEEE--EeCC-CCCcCC----HHHHHHHH
Confidence 999987754433332222111 1111110 0278999999975 455655 4444 344443 88999999
Q ss_pred HHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeC-HHHHhhccCCC-C----------
Q 012368 277 DDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAINYGD-H---------- 341 (465)
Q Consensus 277 ~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~~~~~-~---------- 341 (465)
++||+++|+|++|+ |.-..|.. ....+ .++.+|+ |.+++| +.|+++.+ +++.+.++... +
T Consensus 145 ~~~gi~vi~D~a~a~g~~~~~~~--~g~~g--~~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~ 219 (379)
T PRK11658 145 ERYGIPVIEDAAHAVGTYYKGRH--IGARG--TAIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQ 219 (379)
T ss_pred HHcCCeEEEECCCccCCeECCee--cCCCC--CEEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCCCcchhhhh
Confidence 99999999999997 22122211 12233 2667776 666544 67777764 67766553210 0
Q ss_pred -------------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce--eee--ccc--eEE
Q 012368 342 -------------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK--DVR--GLG--LII 402 (465)
Q Consensus 342 -------------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~--~~g--~~~ 402 (465)
+..+..+.+..+.++.-|+.+ ++..++-+++.+++++.| ...+... ... ... .++
T Consensus 220 ~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L----~~~~~~~~~~~~~~~~~~~~~~ 293 (379)
T PRK11658 220 TQGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQAL----ADLPFQPLSLPAWPHQHAWHLF 293 (379)
T ss_pred cccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh----cCCCCccCcCCCCCCceeEEEE
Confidence 011122233333333333322 333444444445554444 3333211 111 111 122
Q ss_pred EEEec-----CChHHHHHHHHHCCceEeec----C--------------------CCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 403 GIEFD-----VSATPVVDACRDSGLLVLTA----G--------------------KGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 403 ~i~~~-----~~~~~~~~~l~~~Gv~v~~~----~--------------------~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.+.++ ....++.+.|.++||.+... . ....+.+=++...|+++++..++.|
T Consensus 294 ~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i 373 (379)
T PRK11658 294 IIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITAL 373 (379)
T ss_pred EEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHH
Confidence 33332 24678999999999876521 0 0123433334557999999999999
Q ss_pred HHHH
Q 012368 454 CKTL 457 (465)
Q Consensus 454 ~~~l 457 (465)
++++
T Consensus 374 ~~~~ 377 (379)
T PRK11658 374 QQIA 377 (379)
T ss_pred HHHH
Confidence 8865
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-15 Score=147.75 Aligned_cols=305 Identities=13% Similarity=0.030 Sum_probs=180.9
Q ss_pred CCHH-HHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-C--CeEEecC-CHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 012368 115 GDAD-WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-A--DRVFFSN-TGTEANEAAIKFARKFQRHSNPDSKEP 189 (465)
Q Consensus 115 ~~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~--~~v~~~~-sG~eA~~~al~~a~~~t~~~~~~~~~~ 189 (465)
.+|. |++|+.+.+....|... -......+..+.|++.++ . ++|+|+. |||++++.++..... +
T Consensus 23 ~~~~~v~~a~~~~~~~~~hr~~-~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~-----------~ 90 (378)
T PRK03080 23 KRPGWQLEALADALLGRSHRQK-PVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLG-----------A 90 (378)
T ss_pred CChHHHHHHHHhhhcccCcCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCC-----------C
Confidence 4567 88888765432112111 122336677888888887 2 3788875 899999998876531 2
Q ss_pred CceEEEEcCCcccCcccc-c--cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCH
Q 012368 190 ATEFVSFTNSFHGRTMGA-L--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 190 ~~~ii~~~~~yhg~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
++.+++.. +.||..... + ..+..... ..+...+. ..|+++++ . ++.|.+..+...+|.+.|
T Consensus 91 ~~~~vi~~-g~f~~~~~~~~~~~~g~~~v~---~~~~~~g~----~~d~~~i~----~--~~~V~~~h~~t~tG~~~p-- 154 (378)
T PRK03080 91 RRVDHLAW-ESFGSKWATDVVKQLKLEDPR---VLEADYGS----LPDLSAVD----F--DRDVVFTWNGTTTGVRVP-- 154 (378)
T ss_pred CcceEEEe-CHHHHHHHHHHHhhcCCCCce---EeccCCCC----CCCHhhcC----C--CCCEEEEecCCccceecc--
Confidence 22233334 455653221 1 11110100 00000000 01455432 2 234677777777888877
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCC----
Q 012368 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD---- 340 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~---- 340 (465)
+++|.+ +++|+++|+|-+|+ +|.. ....+ + .|++++| |+|++...+|+++.+++.++.+.+..
T Consensus 155 --i~~I~~--~~~g~~~vVDa~qs-~G~~--pidv~--~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~ 223 (378)
T PRK03080 155 --VARWIG--ADREGLTICDATSA-AFAL--PLDWS--K--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARP 223 (378)
T ss_pred --chhhcc--ccCCCeEEEecccc-cccC--CCCHH--H--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCC
Confidence 888888 78999999999987 4322 22222 2 4888776 99987677899999999887765421
Q ss_pred ------------------CcCCCC-ChHHHHHHHHHHHHHhcCc-h---HHHHHHHHHHHHHHHHHHHHHcCCCcee---
Q 012368 341 ------------------HGSTFA-GSPLVCNAAIAVLDKISNP-A---FLASVSKKGHYFKETLKQKLARNPHVKD--- 394 (465)
Q Consensus 341 ------------------~~~t~~-~~~~~~~aa~a~L~~~~~~-~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~--- 394 (465)
...|.+ .+..+..+..++|+.+.+. . ..++.+++.+++++.|+ +.+.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~----~~~~~~~~~~ 299 (378)
T PRK03080 224 IPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAE----KTPWATPLVA 299 (378)
T ss_pred CchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH----hCCCcccccC
Confidence 012222 2334455556777776543 2 33444445555555444 3442111
Q ss_pred -ee-ccceEEEEEecC----ChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 395 -VR-GLGLIIGIEFDV----SATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 395 -~~-~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.. ..+.++.+.++. ...++...|+++|+.+..++ .++.+|++++...|++|++.+++.|++++++++.
T Consensus 300 ~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 300 DPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred CccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 11 123456666533 23457777888898886543 1368999999999999999999999999887763
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-14 Score=154.28 Aligned_cols=290 Identities=18% Similarity=0.157 Sum_probs=190.2
Q ss_pred HHHHHHHHHhhcCCCeEEecCCHH----HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcC
Q 012368 142 QIELAKRLVACSFADRVFFSNTGT----EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR 217 (465)
Q Consensus 142 ~~~la~~l~~~~~~~~v~~~~sG~----eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 217 (465)
..+++++|+++++.+.|.|+++++ +|+.++++..... ++. ...++|+....-||.........+.
T Consensus 570 ~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~---~Gd----~~r~~vli~~~aH~sn~a~a~~~G~---- 638 (993)
T PLN02414 570 FEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLS---RGD----HHRNVCIIPVSAHGTNPASAAMCGM---- 638 (993)
T ss_pred HHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhc---cCC----CCCCEEEeCCCcCccCHHHHHHCCC----
Confidence 568899999999999999998887 7888877765421 111 1123566666788887655443221
Q ss_pred CCCCCCCCCceEeeC-----CCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 012368 218 SPFEPVMPGVNFVEY-----GNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 218 ~~~~~~~~~~~~~~~-----~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
.+..+|. -|+++|++++++ +++++|++...++.+|...+ +++|.++|+++|+++++|-++.
T Consensus 639 --------~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~ 706 (993)
T PLN02414 639 --------KIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM 706 (993)
T ss_pred --------EEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH
Confidence 1222222 189999999984 35788777766666776655 9999999999999999999985
Q ss_pred CCCCCCccccccccCCcccEEEec--ccCC-----CccceeeEEeCHHHHhhccCC---C--------C---cCCCC---
Q 012368 291 GLGRTGYLWAHEHYGIFPDIMTLA--KPLA-----GGLPIGAALVTEKVASAINYG---D--------H---GSTFA--- 346 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~t~s--K~lg-----~G~~iG~v~~~~~i~~~~~~~---~--------~---~~t~~--- 346 (465)
.+..+ ......+..|+++++ |+|+ ||-.+|++.++++++..+-.. . . .+|.+
T Consensus 707 -~a~~~---l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~ 782 (993)
T PLN02414 707 -NAQVG---LTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAP 782 (993)
T ss_pred -HhccC---cCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchh
Confidence 11111 111123446888774 8775 246689999999877655311 0 0 12222
Q ss_pred -ChHHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHHcCCCceeeeccce-E--EEEEec-------CChHH
Q 012368 347 -GSPLVCNAAIAVLDKISNPAF---LASVSKKGHYFKETLKQKLARNPHVKDVRGLGL-I--IGIEFD-------VSATP 412 (465)
Q Consensus 347 -~~~~~~~aa~a~L~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~-~--~~i~~~-------~~~~~ 412 (465)
++.+.+.++...+..+..+.+ .++...+..+++++|.+. ++.. .....|. + +.+.+. .+..+
T Consensus 783 ~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---~~~~-~~~~~~~~~hEfv~~~~~l~~~~g~~~~d 858 (993)
T PLN02414 783 WGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---YPVL-FRGKNGTCAHEFIIDLRPFKNTAGIEPED 858 (993)
T ss_pred hhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---CCcc-ccCCCCCeeeeEEEeccccccccCCCHHH
Confidence 334555566666776665655 566667778888877662 2221 1111122 1 112221 34578
Q ss_pred HHHHHHHCCceEeecC--CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 413 VVDACRDSGLLVLTAG--KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
+.++|.+.|+...... ..+.+|++|.-..+++|||+++++|..+..+.++
T Consensus 859 i~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 859 VAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred HHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765321 1478999999999999999999999999888765
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=146.79 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=118.3
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++...+|+++|++..+.+..++++||++|+.++++.+.. ++++||+..+.|++........
T Consensus 57 y~r~~~p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all~-----------pGd~VIv~~~~y~~t~~~~~~~--- 122 (427)
T PRK05994 57 YTRITNPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQ-----------PGDEFIAARKLYGGSINQFGHA--- 122 (427)
T ss_pred eECCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC-----------CCCEEEEecCcchhHHHHHHHH---
Confidence 34455666889999999999977899999999999999987652 6899999999997754221110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.......+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|++||+++|+|+++...
T Consensus 123 ------~~~~G~~v~~vd~~d~~~l~~ai~~-~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~~- 190 (427)
T PRK05994 123 ------FKSFGWQVRWADADDPASFERAITP-RTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLASP- 190 (427)
T ss_pred ------HHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCcccc-
Confidence 0011233455666689999999975 5778888877777777665 899999999999999999998621
Q ss_pred CCCccccccccCCcccEEE--ecccCCC-ccceeeEEe
Q 012368 294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-GLPIGAALV 328 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t--~sK~lg~-G~~iG~v~~ 328 (465)
. ........+|+++ ++|.++| |-.+|.++.
T Consensus 191 ~-----~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 191 Y-----LIRPIEHGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred c-----cCCccccCCcEEEEcCccccCCCCCcEEEEEE
Confidence 1 1222345577775 6699986 545555544
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-14 Score=143.37 Aligned_cols=215 Identities=20% Similarity=0.227 Sum_probs=138.4
Q ss_pred CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccccc-C-CcccEE
Q 012368 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY-G-IFPDIM 311 (465)
Q Consensus 234 d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~-~-~~pdi~ 311 (465)
|++++++++.+.+..++++ ...+.++ ..+ +++|+++|++||++|++|++|+ +|..|.......+ . -..|++
T Consensus 208 D~d~l~~~~~~~~plvii~-g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~v 280 (493)
T PRK13580 208 DYDEIAALAREFKPLILVA-GYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADIV 280 (493)
T ss_pred CHHHHHHHHhhcCCEEEEe-CccccCC-CcC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcEE
Confidence 7899999998654544444 4444444 444 9999999999999999999997 5444321111111 1 135766
Q ss_pred --EecccCCCccceeeEEeCHHHHhhccCCCCcCCCCC-hHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHH
Q 012368 312 --TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAG-SPLVCNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 312 --t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~-~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~ 385 (465)
|++|++.|. +.|++++++++.+.+.... ...+++ .+..++|+..++..+.++ ++.+++.++.++|++.|.+.
T Consensus 281 tgT~hKaL~GP-~GG~I~~~~~l~~~L~~a~-P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~ 358 (493)
T PRK13580 281 TTTTHKTLRGP-RGGLVLAKKEYADAVDKGC-PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR 358 (493)
T ss_pred EeCChhhccCC-CeEEEEecHHHHHHHhhCC-CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 467999653 3588899999888884221 222322 233444444455555433 37888899999999888774
Q ss_pred HHcCCCceeeeccceEEEEEecCC---hHHHHHHHHHCCceEeec-------C--CCCEEEEecCC----CCcHHHHHHH
Q 012368 386 LARNPHVKDVRGLGLIIGIEFDVS---ATPVVDACRDSGLLVLTA-------G--KGNVVRLVPPL----IISEQELDQA 449 (465)
Q Consensus 386 ~~~~~~~~~~~~~g~~~~i~~~~~---~~~~~~~l~~~Gv~v~~~-------~--~~~~lRi~~~~----~~t~e~i~~~ 449 (465)
.++.+.. .....++.+.+... ...+.+.|.+.||++.+. + ....|||+++. .++++|++++
T Consensus 359 --G~~vv~g-gTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~i 435 (493)
T PRK13580 359 --GARLVTG-GTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEV 435 (493)
T ss_pred --CCCccCC-CCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHH
Confidence 3332211 12345667777322 235667889999998632 1 02569998887 5579999999
Q ss_pred HHHHHHHHHHh
Q 012368 450 VEILCKTLPVL 460 (465)
Q Consensus 450 l~~l~~~l~~~ 460 (465)
++.|.++++..
T Consensus 436 ad~l~~~l~~~ 446 (493)
T PRK13580 436 AELIVKVLSNT 446 (493)
T ss_pred HHHHHHHHHhh
Confidence 99999888753
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-14 Score=144.28 Aligned_cols=302 Identities=19% Similarity=0.169 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
++-.+++.+.+..... ...+...++++.++++++.+..++++||++|+..+++.+. . .++++||+.
T Consensus 10 ~~~~~~v~~~~~~~~~----~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~--~--------~~Gd~Viv~ 75 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFL----TQGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALG--V--------GPGDRVWTT 75 (380)
T ss_pred HHHHHHHHHHHhcCCc----cCChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcC--C--------CCCCEEEeC
Confidence 4457777777765321 2234467899999999987777888899999999998652 1 168899999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
.++|++........+..+.+. +..+... ..|++++++.++. .++++|++ ++. .|...+ +++|.
T Consensus 76 ~~~~~~~~~~~~~~G~~~~~~----~~~~~~~---~~d~~~l~~~i~~~~~~~t~~v~~--~~~-~G~~~~----~~~i~ 141 (380)
T TIGR03588 76 PITFVATANCALYCGAKVDFV----DIDPDTG---NIDEDALEKKLAAAKGKLPKAIVP--VDF-AGKSVD----MQAIA 141 (380)
T ss_pred CcchHHHHHHHHHcCCEEEEE----ecCCCcC---CcCHHHHHHHhhcccCCCceEEEE--eCC-CCccCC----HHHHH
Confidence 999977654333333222111 1111110 1278999999972 24556653 222 354443 89999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCC--cccEEEec----ccCCCccceeeEEe-CHHHHhhccCCC-C----
Q 012368 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLA----KPLAGGLPIGAALV-TEKVASAINYGD-H---- 341 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~--~pdi~t~s----K~lg~G~~iG~v~~-~~~i~~~~~~~~-~---- 341 (465)
++|++||++||+|++|+ +|.. +.....+. .-|+.++| |.++.| ..|+++. ++++.+.++... +
T Consensus 142 ~l~~~~~~~lI~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~ 216 (380)
T TIGR03588 142 ALAKKHGLKIIEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITK 216 (380)
T ss_pred HHHHHcCCEEEEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCC
Confidence 99999999999999997 3211 11111222 23777765 888655 4566665 466665443210 0
Q ss_pred --------------------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-e--cc
Q 012368 342 --------------------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-R--GL 398 (465)
Q Consensus 342 --------------------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~--~~ 398 (465)
+..+..+.+..+.+++.|+.+ +...++-+++.+++.+.|.. .+.+... . +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~----~~~~~~~~~~~~~ 290 (380)
T TIGR03588 217 DPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKD----LPYFTPLTIPLGS 290 (380)
T ss_pred CcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC----CCCccCCCCCCCC
Confidence 011222444444455555533 34445555555565555544 3322111 1 11
Q ss_pred ---ceEEEEEec----CChHHHHHHHHHCCceEeecC--------------C----------CCEEEEecCCCCcHHHHH
Q 012368 399 ---GLIIGIEFD----VSATPVVDACRDSGLLVLTAG--------------K----------GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 399 ---g~~~~i~~~----~~~~~~~~~l~~~Gv~v~~~~--------------~----------~~~lRi~~~~~~t~e~i~ 447 (465)
..++.+.+. ....++.+.|.++||.+.... . ...+++-++...|++|++
T Consensus 291 ~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~ 370 (380)
T TIGR03588 291 KSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQ 370 (380)
T ss_pred EeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHH
Confidence 122233332 246789999999999775210 0 134666566678999999
Q ss_pred HHHHHHHHHH
Q 012368 448 QAVEILCKTL 457 (465)
Q Consensus 448 ~~l~~l~~~l 457 (465)
.+++.|++++
T Consensus 371 ~i~~~l~~~~ 380 (380)
T TIGR03588 371 RVVETLRKVL 380 (380)
T ss_pred HHHHHHHHhC
Confidence 9999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=144.97 Aligned_cols=309 Identities=11% Similarity=0.086 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 012368 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (465)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~ 195 (465)
..+-.+++.+.... .+.+.+..++...+|++.++++.+.+.++.++||+.|+.+++..+.. ++|+||+
T Consensus 38 ~~~~~~~~~~~~~~-g~~ysR~~nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~-----------~GD~VI~ 105 (432)
T PRK06702 38 TSDDLAALFNLEAE-GYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICS-----------SGDHLLC 105 (432)
T ss_pred CHHHHHHHHhcccc-CceeECCCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcC-----------CCCEEEE
Confidence 34444444443322 22223344677899999999999988889999999999999986541 6899999
Q ss_pred EcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 012368 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (465)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~ 274 (465)
..++|.+........ .......+.+++.+ |+++++++|++ ++++|++|...+..+.++. +++|++
T Consensus 106 ~~~~Y~~T~~~~~~~---------l~~~Gi~v~~vd~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~D----i~~I~~ 171 (432)
T PRK06702 106 SSTVYGGTFNLFGVS---------LRKLGIDVTFFNPNLTADEIVALAND-KTKLVYAESLGNPAMNVLN----FKEFSD 171 (432)
T ss_pred CCCchHHHHHHHHHH---------HHHCCCEEEEECCCCCHHHHHHhCCc-CCeEEEEEcCCCccccccC----HHHHHH
Confidence 999996554321110 00112334555554 88999999986 4667777765444444444 999999
Q ss_pred HHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC-ccce-eeEEeCH----------HHHh------
Q 012368 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTE----------KVAS------ 334 (465)
Q Consensus 275 l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~----------~i~~------ 334 (465)
+|++||+++|+|+++. .+..+..+....||+ +++|.++| +--+ |.++... ++.+
T Consensus 172 iA~~~gi~livD~T~~------tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~ 245 (432)
T PRK06702 172 AAKELEVPFIVDNTLA------TPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYH 245 (432)
T ss_pred HHHHcCCEEEEECCCC------chhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccccccc
Confidence 9999999999999863 222333333445666 57798886 3222 3333211 1110
Q ss_pred ---------------hcc-CCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH----cCCCce-
Q 012368 335 ---------------AIN-YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLA----RNPHVK- 393 (465)
Q Consensus 335 ---------------~~~-~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~- 393 (465)
... ..........+|+.+..++..|+.+ +..+++..++...+.+.|++... .+|...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl--~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~ 323 (432)
T PRK06702 246 GVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETL--HLRMERHSENALAVAKWLADHERIEWVNYPGLDS 323 (432)
T ss_pred ccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCC
Confidence 000 0011122467788777766666533 33445555666666555554210 112111
Q ss_pred ---------ee-eccceEEEEEecCCh---HHHHHHHH--HCCc--------eEeec---------------C-CCCEEE
Q 012368 394 ---------DV-RGLGLIIGIEFDVSA---TPVVDACR--DSGL--------LVLTA---------------G-KGNVVR 434 (465)
Q Consensus 394 ---------~~-~~~g~~~~i~~~~~~---~~~~~~l~--~~Gv--------~v~~~---------------~-~~~~lR 434 (465)
.. .|.|.++.+++.... .+|.+.|. ..++ +..|. | ..+.+|
T Consensus 324 ~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liR 403 (432)
T PRK06702 324 NENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIR 403 (432)
T ss_pred CccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEE
Confidence 11 467889999984222 23433332 1111 11111 1 135799
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 435 LVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 435 i~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
+++.+ |+.+.+++-|+++|..-++
T Consensus 404 lSvGl----Ed~eDLi~Dl~~Al~~~~~ 427 (432)
T PRK06702 404 LSVGI----EDVSDIIADLEAALVGGKQ 427 (432)
T ss_pred EEecc----CCHHHHHHHHHHHHhcCcc
Confidence 98765 4567778888888875444
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=143.61 Aligned_cols=166 Identities=20% Similarity=0.193 Sum_probs=118.7
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+....++...+|+++|++..+.+..+.++||+.|+..++..+.. ++++||+.++.|++.......+.
T Consensus 39 ~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~-----------~Gd~Vv~~~~~y~~t~~~~~~l~ 107 (397)
T PRK05939 39 FTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLR-----------AGDHLVSSQFLFGNTNSLFGTLR 107 (397)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcC-----------CCCEEEECCCccccHHHHHHHHH
Confidence 3345567788899999999999977778888899999998876642 68999999988855432111110
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
.....+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|+++|+++|+|++|..
T Consensus 108 ----------~~G~~v~~v~~~d~e~l~~~l~~-~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~ 172 (397)
T PRK05939 108 ----------GLGVEVTMVDATDVQNVAAAIRP-NTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTS 172 (397)
T ss_pred ----------hcCCEEEEECCCCHHHHHHhCCC-CCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCccc
Confidence 11133455666789999999975 5677888877666676644 99999999999999999999852
Q ss_pred CCCCCccccccccCCcccEE--EecccCCC-ccceeeEEeC
Q 012368 292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVT 329 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~ 329 (465)
.. .+.......|++ +++|.++| |..+|+++..
T Consensus 173 ~~------~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 173 PW------LFRPKDVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred cc------ccCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence 21 112222234555 67899997 8888887764
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=149.14 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=118.0
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+..+.++...+|+++++++.+.+..++++||+.|+.+++.++. ++++||+.++.|++.........
T Consensus 43 ~y~r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~~l~------------pGd~Vi~~~~~y~~t~~~~~~~~- 109 (380)
T PRK06176 43 EYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSLFQ------------SGDHVLLGDDVYGGTFRLFDKVL- 109 (380)
T ss_pred cccCCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHcC------------CCCEEEEcCCChhHHHHHHHHHH-
Confidence 34566777789999999999987777888999999986664321 68999999999876542221110
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
......+.+++..|++++++++++ ++++|++|..++..|.+.+ +++|.++|++||+++|+|++|...
T Consensus 110 --------~~~gi~v~~vd~~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~ 176 (380)
T PRK06176 110 --------VKNGLSCTIIDTSDLSQIKKAIKP-NTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP 176 (380)
T ss_pred --------HhcCeEEEEcCCCCHHHHHHhcCc-CceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 011122344555689999999975 4677777655555565554 889999999999999999998742
Q ss_pred CCCCccccccccCCcccEEEe--cccCCC-c-cceeeEEeC-HHHHhhcc
Q 012368 293 GRTGYLWAHEHYGIFPDIMTL--AKPLAG-G-LPIGAALVT-EKVASAIN 337 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~--sK~lg~-G-~~iG~v~~~-~~i~~~~~ 337 (465)
..+.. .+...|++++ +|.++| | .-.|+++.+ +++.+.+.
T Consensus 177 -~~~~p-----~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~ 220 (380)
T PRK06176 177 -YYQNP-----LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA 220 (380)
T ss_pred -ccCCc-----cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH
Confidence 12221 1334577754 599986 4 456777764 56655554
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-14 Score=143.11 Aligned_cols=235 Identities=18% Similarity=0.197 Sum_probs=148.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++...+++++++++.+.+.+++++||+.|+.+++.+ . .++|+||+.++.|++.........
T Consensus 127 Y~r~gnpt~~aLE~~lA~leg~e~ai~~~SG~aAi~~il~l-l-----------~~GD~VI~~~~~y~~t~~ll~~~l-- 192 (464)
T PLN02509 127 YTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHL-I-----------KNGEEIVAGDDVYGGSDRLLSQVV-- 192 (464)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHH-h-----------CCCCEEEEcCCchhhHHHHHHHHH--
Confidence 34445677999999999999988888999999988655542 2 168999999999976542211100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..|++++++++++ ++++|++|..++..|.+.+ +++|.++|++||+++|+|+++.. +
T Consensus 193 -------~~~G~~v~~vd~~d~e~l~~ai~~-~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a~-~ 259 (464)
T PLN02509 193 -------PRSGVVVKRVNTTNLDEVAAAIGP-QTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIMS-P 259 (464)
T ss_pred -------HHCCeEEEEeCCCCHHHHHHhCCc-CCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCccc-c
Confidence 000122334555689999999975 4567777766666665543 99999999999999999999752 2
Q ss_pred CCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..+.. .+...|+++ ++|+++| | .-.|+++++ +.+.+.+...........+|..++.++..|+.+ +..+
T Consensus 260 ~~~~p-----l~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL--~~R~ 332 (464)
T PLN02509 260 VLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM--ALRI 332 (464)
T ss_pred ccCCh-----hhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhH--HHHH
Confidence 22221 123457764 5699986 4 446777764 444333321111111224677777777777654 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEe
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEF 406 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~ 406 (465)
++..++..++.+.|+ .+|.+. ...+.|.++.+++
T Consensus 333 ~r~~~nA~~la~~L~----~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~ 384 (464)
T PLN02509 333 EKQQENARKIAMYLS----SHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT 384 (464)
T ss_pred HHHHHHHHHHHHHHh----cCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe
Confidence 555566666555554 344221 1246688999988
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-13 Score=138.75 Aligned_cols=327 Identities=12% Similarity=0.016 Sum_probs=193.6
Q ss_pred CCHHHHHHHHHHHhhc-ccc-cCCCCCHHHHHHHHHHHhhcC-C---CeEEe--cCCHHHHHHHHHHHHHHHhhhc--CC
Q 012368 115 GDADWIKAVVDQANVL-THV-SNMYYSIPQIELAKRLVACSF-A---DRVFF--SNTGTEANEAAIKFARKFQRHS--NP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~-~~~-~~~~~~~~~~~la~~l~~~~~-~---~~v~~--~~sG~eA~~~al~~a~~~t~~~--~~ 184 (465)
.+|++.+++...+... .+. ..+......++..+++++.++ . +++.+ |+||||||..|+..++...... ..
T Consensus 53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~ 132 (431)
T TIGR01788 53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA 132 (431)
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999998887642 221 111122446778888888887 3 35665 7999999999998876432100 00
Q ss_pred CCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCccc
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYS 263 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~ 263 (465)
.. ......|+.+..-|.+...+....+-.. ...+..++ ... |+++|+++|++ ++.+|++.-.+++.|.+.
T Consensus 133 g~-~~~~~~ii~s~~~H~sv~ka~~~lg~~v---~~i~~d~~~~~v----d~~~L~~~i~~-~t~lV~~t~g~t~tG~id 203 (431)
T TIGR01788 133 GK-PTDKPNLVMGSNVQVCWEKFARYFDVEL---REVPMDPGRYVI----DPEQVVEAVDE-NTIGVVCILGTTYTGEYE 203 (431)
T ss_pred CC-CCCCcEEEEcCcchHHHHHHHHHcCcee---EEEecCCCceee----CHHHHHHHHhh-CCeEEEEEeCCCCCcccC
Confidence 00 0012355555665655544332222111 11122111 111 88999999975 467888888888889888
Q ss_pred CCHHHHHHHHHHHHHh------CCEEEEeccccCCCC---CCc-cccccccCCcccEEEec--ccCCCccceeeEEeCHH
Q 012368 264 ATKEFLQFLRDACDDA------GALLVFDEVQCGLGR---TGY-LWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK 331 (465)
Q Consensus 264 ~~~~~l~~l~~l~~~~------g~llI~DEv~~g~gr---~g~-~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~ 331 (465)
| +++|.++|+++ |+++++|-+|.|+-. .++ .+.+. ....|.+++| |.+.+...+|+++.++.
T Consensus 204 p----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s~HK~~~~P~g~G~l~~r~~ 277 (431)
T TIGR01788 204 D----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVSGHKYGLVYPGVGWVIWRDE 277 (431)
T ss_pred C----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEECchhccCCCCCcEEEEEeCh
Confidence 7 99999999999 999999999986421 122 11111 1246778887 77656678899988754
Q ss_pred --HHhhccCC--CCc-----CCCCChH--HHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHcCCCceeee-
Q 012368 332 --VASAINYG--DHG-----STFAGSP--LVCNAAIAVLDKISNPA---FLASVSKKGHYFKETLKQKLARNPHVKDVR- 396 (465)
Q Consensus 332 --i~~~~~~~--~~~-----~t~~~~~--~~~~aa~a~L~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~- 396 (465)
+.+.+... ..+ .++.++. ....+....|..+...+ ..++..++.+++.+.|++ .|.+..+.
T Consensus 278 ~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~----~~~~el~~~ 353 (431)
T TIGR01788 278 EALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAK----LGPFEIISD 353 (431)
T ss_pred HHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh----CCCEEEeeC
Confidence 32332110 111 1222221 12233444555444333 344444555555555544 45332222
Q ss_pred -ccceEEEEEec------CChHHHHHHHHHCCceEe----ecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 397 -GLGLIIGIEFD------VSATPVVDACRDSGLLVL----TAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 397 -~~g~~~~i~~~------~~~~~~~~~l~~~Gv~v~----~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
....++.|.+. .+..++.+.|.++|+.+. |... ..++|+.+...++++.++++++.|++++.++
T Consensus 354 ~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 354 GSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 23455555552 244678999999998642 2211 1458998877789999999999999988765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=145.13 Aligned_cols=164 Identities=20% Similarity=0.164 Sum_probs=116.7
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++....|++.|+++.+.+..++++||++|+..++..+.. ++++|++.++.|++.........
T Consensus 58 y~r~~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~-----------~GD~Vlv~~~~y~~t~~~~~~~~-- 124 (431)
T PRK08248 58 YTRIMNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIAS-----------AGDEIVSSSSLYGGTYNLFAHTL-- 124 (431)
T ss_pred eECCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-----------CCCEEEEccCchhhHHHHHHHHH--
Confidence 44556777889999999999988899999999999999876542 68999999998876542221100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..|++++++++++ ++++|+++..++..|.+.+ +++|.++|+++|+++|+|+++.. +
T Consensus 125 -------~~~Gv~v~~vd~~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a~-~ 191 (431)
T PRK08248 125 -------PKLGITVKFVDPSDPENFEAAITD-KTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFAS-P 191 (431)
T ss_pred -------HhCCEEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCCc-c
Confidence 011233456666789999999975 4667777655555566655 88999999999999999999752 1
Q ss_pred CCCccccccccCCcccEE--EecccCCC-ccceeeEEe
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALV 328 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~ 328 (465)
.. ........|++ +++|.++| |.++|++++
T Consensus 192 ~~-----~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 192 YL-----LRPIEHGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred cc-----CChhHcCCCEEEEcCccccCCCCCceEEEEE
Confidence 11 11112335666 46699997 778877765
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=140.91 Aligned_cols=239 Identities=14% Similarity=0.073 Sum_probs=160.0
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+.+..++....|+++|+++.+.+..++++||+.|+..++..... ++++||+.+..|++.........
T Consensus 54 ~~YsR~~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~-----------~GD~Vv~~~~~Yg~t~~l~~~~l 122 (395)
T PRK08114 54 LFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVE-----------QGDHVLMTGTAYEPTQDFCSKIL 122 (395)
T ss_pred ccccCCCChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcC-----------CCCEEEEeCCCcHHHHHHHHHHH
Confidence 3456677888999999999999988999999999999998875541 68999999888866653321100
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccc
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEVQ 289 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~ 289 (465)
......+.+++..|.+++++++++ ++++|++|...+..|.+.+ +++|+++|+++| +++|+|.++
T Consensus 123 ---------~~~Gi~v~~vd~~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 123 ---------SKLGVTTTWFDPLIGADIAKLIQP-NTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred ---------HhcCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCC
Confidence 112234556666789999999975 5789999998888888777 999999999985 999999997
Q ss_pred cCCCCCCccccccccCCcccEEEe--cccCCC-c-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 290 CGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 290 ~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
.. +. .+.......|+++. .|+++| | .-.|.++.++++.+.+........-..+|..+......|+.+ +
T Consensus 189 a~----p~--~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL--~ 260 (395)
T PRK08114 189 AA----GV--LFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTL--G 260 (395)
T ss_pred cc----cc--ccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcH--H
Confidence 52 21 23334445787765 599987 4 778888878776555532111111234555555444333322 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEec
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEFD 407 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~~ 407 (465)
-.+++..++...+.+.|+ .+|.+. ...+.|.++.+++.
T Consensus 261 lR~~~~~~na~~va~~L~----~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK08114 261 VRLRQHEESSLKVAEWLA----EHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLK 316 (395)
T ss_pred HHHHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEec
Confidence 223444445555444443 444222 12467889999984
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-14 Score=140.43 Aligned_cols=286 Identities=21% Similarity=0.231 Sum_probs=172.7
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+.++.++....|+++|++..+.+.++.++||..|+..++..+.. ++++||+....|++.........
T Consensus 47 ~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~-----------~Gd~iv~~~~~Y~~t~~~~~~~l 115 (386)
T PF01053_consen 47 YIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLK-----------PGDHIVASDDLYGGTYRLLEELL 115 (386)
T ss_dssp CSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS------------TTBEEEEESSSSHHHHHHHHHCH
T ss_pred cceeccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcc-----------cCCceEecCCccCcchhhhhhhh
Confidence 4456778888999999999999989999999999999998886653 68999999999977653322111
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEecccc
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG-ALLVFDEVQC 290 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g-~llI~DEv~~ 290 (465)
......+.+++..|++++++++++ ++++|++|+..+....++. +++|+++|+++| +++|+|....
T Consensus 116 ---------~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 116 ---------PRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp ---------HHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTT
T ss_pred ---------cccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeecccc
Confidence 112234567777899999999986 7899999997666554444 999999999998 9999999764
Q ss_pred CCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCH--HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC
Q 012368 291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTE--KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~--~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~ 364 (465)
.. ..+..+....|++ +.+|.++| | .-.|+++++. ++++.+...........+|..+......|+.+
T Consensus 182 tp------~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl-- 253 (386)
T PF01053_consen 182 TP------YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL-- 253 (386)
T ss_dssp HT------TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH--
T ss_pred ce------eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH--
Confidence 22 1222233335666 56799987 4 6678888654 67665542111111123444444434333322
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCceee------------------eccceEEEEEecCCh---HHHHHHHHH--CC
Q 012368 365 PAFLASVSKKGHYFKETLKQKLARNPHVKDV------------------RGLGLIIGIEFDVSA---TPVVDACRD--SG 421 (465)
Q Consensus 365 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~i~~~~~~---~~~~~~l~~--~G 421 (465)
+-.+++..++...+.+ .++.+|.+..| .+.|.++.|++.... .+|.+.|.= .|
T Consensus 254 ~~R~~~~~~nA~~lA~----~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~ 329 (386)
T PF01053_consen 254 PLRMERQNENAEALAE----FLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIA 329 (386)
T ss_dssp HHHHHHHHHHHHHHHH----HHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEES
T ss_pred HHHHHHHHHHHHHHHH----HHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhh
Confidence 2234444455544444 44556644322 366779999994332 344444421 11
Q ss_pred ce-------E-eec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 422 LL-------V-LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 422 v~-------v-~~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.- + .|. | .++.+|+++.+ |+.+.+++.|+++|+
T Consensus 330 ~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 330 PSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQALE 386 (386)
T ss_dssp SS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred hhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhcC
Confidence 11 1 111 1 13679998775 456667777777664
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-14 Score=140.86 Aligned_cols=235 Identities=15% Similarity=0.170 Sum_probs=142.3
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+|+++|++..+.+..+++++|+.|+..++.++. ++++||+.++.|.+.........
T Consensus 44 y~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~~l~------------~Gd~Viv~~~~y~~~~~~~~~~~-- 109 (377)
T PRK07671 44 YSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMMLFS------------SGDHVILTDDVYGGTYRVMTKVL-- 109 (377)
T ss_pred cCCCCChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHhC------------CCCEEEECCCccchHHHHHHHHH--
Confidence 4556778889999999999987777788889988876654221 68999999999865432211110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..|++++++++++ ++++|+++..++..|...+ +++|.++|+++|+++|+||+|...
T Consensus 110 -------~~~G~~v~~v~~~d~~~l~~ai~~-~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~- 176 (377)
T PRK07671 110 -------NRFGIEHTFVDTSNLEEVEEAIRP-NTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTP- 176 (377)
T ss_pred -------hcCCeEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCcc-
Confidence 011123445555689999999975 4556555544444455544 999999999999999999998632
Q ss_pred CCCccccccccCCcccEE--EecccCCC-c-cceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..+.. .....|++ +++|+++| + .-.|++++ ++++++.+........-..+|..+..++..++.+ ...+
T Consensus 177 ~~~~p-----~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl--~~R~ 249 (377)
T PRK07671 177 YWQSP-----ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTL--GIRM 249 (377)
T ss_pred ccCCh-----hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChH--HHHH
Confidence 11221 12234666 46799986 2 34565655 5667666643221112223455444444333322 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce------------------eeeccceEEEEEe
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK------------------DVRGLGLIIGIEF 406 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~g~~~~i~~ 406 (465)
++..++...+.+.|+ ++|.+. ...|.|.++.+++
T Consensus 250 ~~~~~na~~la~~L~----~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~ 301 (377)
T PRK07671 250 EEHETNSRAIAEFLN----NHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301 (377)
T ss_pred HHHHHHHHHHHHHHH----cCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence 444455555554444 333221 1246788999998
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-13 Score=134.41 Aligned_cols=285 Identities=13% Similarity=0.133 Sum_probs=177.7
Q ss_pred HHHHHHHHHHhhcC--CCe--EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012368 141 PQIELAKRLVACSF--ADR--VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 141 ~~~~la~~l~~~~~--~~~--v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
...+..+++++.++ .++ .+||+||||+|..++..++.+. +++.|+ .+..-|.+...+...-+....
T Consensus 66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~---------~~~~ii-~s~~~H~Sv~ka~~~lg~~~~ 135 (380)
T PRK02769 66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELF---------PDGTLY-YSKDTHYSVSKIARLLRIKSR 135 (380)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhC---------CCcEEE-eCCCceehHHHHHHHcCCCCc
Confidence 35677788888887 234 4899999999999998888643 344444 445555555444332222211
Q ss_pred CCCCCCCCCCceEeeCCCHHHHHhhcCCC--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC---CEEEEeccccC
Q 012368 217 RSPFEPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG---ALLVFDEVQCG 291 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g---~llI~DEv~~g 291 (465)
.. +..+... -|+++|+++++++ .+.+|++...++..|.+.| +++|.++|++|| +++++|-+|.+
T Consensus 136 ~V---~~~~~g~----id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg 204 (380)
T PRK02769 136 VI---TSLPNGE----IDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSG 204 (380)
T ss_pred ee---ccCCCCc----CcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccc
Confidence 11 1111111 2899999999743 4677888888888888877 999999999998 69999999986
Q ss_pred CCCCCc---cccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCC-----CCcCCCCC--hHHHHHHHHHHH
Q 012368 292 LGRTGY---LWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG-----DHGSTFAG--SPLVCNAAIAVL 359 (465)
Q Consensus 292 ~gr~g~---~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~-----~~~~t~~~--~~~~~~aa~a~L 359 (465)
+ ..-. ...++... ..|.+++| |.+++..++|+++.+++..+.+.+. ....|+.+ |..+.++..++|
T Consensus 205 ~-~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL 282 (380)
T PRK02769 205 M-ILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAI 282 (380)
T ss_pred e-eecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHH
Confidence 4 1110 00111111 57888887 8777678999999998777665321 01112222 335566667777
Q ss_pred HHhcCch---HHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEe
Q 012368 360 DKISNPA---FLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLV 436 (465)
Q Consensus 360 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~ 436 (465)
+.+..++ ..++..++.+++.++|++ .+......+..+.+.+. .+..++. +|..+.+.+ +.+|+.
T Consensus 283 ~~lg~~G~~~~~~~~~~la~~l~~~L~~----~g~~~~~~p~~~~v~f~--~~~~~~~-----~~w~l~~~~--~~~hi~ 349 (380)
T PRK02769 283 RSLGSKGLRQRVQHCLDMAQYAVDRLQA----NGIPAWRNPNSITVVFP--CPSERIW-----KKWHLATSG--NQAHII 349 (380)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHh----CCCEEEcCCCceEEEEc--CCCHHHH-----hCeeEcccC--CEEEEE
Confidence 7765544 445555566666666644 23222222333333333 2322322 566665543 578888
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 437 PPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+...++++.+|++++.|...+....
T Consensus 350 ~~~~~~~~~~~~f~~dl~~~~~~~~ 374 (380)
T PRK02769 350 TMPHHNKQQIDSLIDELIFDLKNPN 374 (380)
T ss_pred ECCCCCHHHHHHHHHHHHHHHhccc
Confidence 8888899999999999988876543
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-13 Score=134.34 Aligned_cols=279 Identities=17% Similarity=0.160 Sum_probs=172.8
Q ss_pred HHHHHHHHHhhcC--CCeE--EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcC
Q 012368 142 QIELAKRLVACSF--ADRV--FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR 217 (465)
Q Consensus 142 ~~~la~~l~~~~~--~~~v--~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 217 (465)
..++.+++++.++ .+.+ +||+||||||..|+..++.+. ++ .+++.+..-|-+..-+....+...
T Consensus 68 e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~---------~~-~~vi~s~~~H~Sv~kaa~~lg~~~-- 135 (374)
T PLN03032 68 EVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVF---------PD-GILYASRESHYSVFKAARMYRMEA-- 135 (374)
T ss_pred HHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhC---------CC-cEEEeCCCceeHHHHHHHHcCCCC--
Confidence 6678888888887 4555 999999999999999988642 12 367777777876655543322211
Q ss_pred CCCCCCCCCceEeeCCCHHHHHhhcCCC--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-----CEEEEecccc
Q 012368 218 SPFEPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG-----ALLVFDEVQC 290 (465)
Q Consensus 218 ~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g-----~llI~DEv~~ 290 (465)
...|...... -|+++|+++|+++ .+.+|++.-.+++.|.+.| +++|.++|++|| +++++|-++.
T Consensus 136 -~~V~~d~~g~----id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~g 206 (374)
T PLN03032 136 -VKVPTLPSGE----IDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALF 206 (374)
T ss_pred -eEeeeCCCCc----CcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccch
Confidence 0112111111 1899999999742 4667777777777888876 999999999997 5899999987
Q ss_pred CCCCCC---ccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCC-----CCcCCCCCh--HHHHHHHHHH
Q 012368 291 GLGRTG---YLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG-----DHGSTFAGS--PLVCNAAIAV 358 (465)
Q Consensus 291 g~gr~g---~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~--~~~~~aa~a~ 358 (465)
|+ ... ....++ +....|.++++ |.++...++|+++.+++.++.+... ....|..++ ....++..++
T Consensus 207 g~-~~p~~~~~~~~~-~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~ 284 (374)
T PLN03032 207 GL-MMPFVSRAPEVT-FRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYT 284 (374)
T ss_pred hh-hhhccCCCcccC-CCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHH
Confidence 63 111 000011 11247888877 7666578999999998776655321 011233333 3455666677
Q ss_pred HHHhcCchH---HHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEE
Q 012368 359 LDKISNPAF---LASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRL 435 (465)
Q Consensus 359 L~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi 435 (465)
|+.+..+.+ .++..++.+++.+.|++. +......+..+.+.+..+ .... ..+|..+.+.. +.+++
T Consensus 285 l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~p~~~~V~f~~~-~~~~-----~~~~w~l~~~~--~~~hi 352 (374)
T PLN03032 285 LRRKGYRGIKRDVQHCMRNAHYLKDRLTEA----GLTCRLNELSSTVVFERP-MDEA-----FIKKWQLACEG--DIAHV 352 (374)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEEECCCceEEEEcCC-CcHh-----HhheeeecccC--CEEEE
Confidence 777766554 444555666666666552 322222333333333322 1111 23566555432 57888
Q ss_pred ecCCCCcHHHHHHHHHHHHH
Q 012368 436 VPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 436 ~~~~~~t~e~i~~~l~~l~~ 455 (465)
.+...++++.+|++++-|++
T Consensus 353 ~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 353 VVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EECCCCCHHHHHHHHHHHhc
Confidence 87777788999999988764
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-14 Score=141.61 Aligned_cols=163 Identities=21% Similarity=0.179 Sum_probs=112.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC
Q 012368 135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (465)
Q Consensus 135 ~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (465)
....++...+|+++|+++.+.+..++++||+.|+..++..+.. ++++||+....|.+.........
T Consensus 64 sr~~~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~-----------~Gd~Vv~~~~~y~~t~~~~~~~l--- 129 (436)
T PRK07812 64 TRIMNPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAG-----------AGDHIVSSPRLYGGTYNLFHYTL--- 129 (436)
T ss_pred cCCCCchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC-----------CCCEEEEeCCcchHHHHHHHHHh---
Confidence 4445677889999999999988899999999999999876542 68899988877755332111100
Q ss_pred CcCCCCCCCCCCceEee-CCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 215 HYRSPFEPVMPGVNFVE-YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++ ..|++++++++++ ++++|++|.+.++.|.+.+ +++|.++|++||+++|+|+++.. +
T Consensus 130 ------~~~Gi~v~~vdd~~d~e~l~~ai~~-~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~-~ 197 (436)
T PRK07812 130 ------PKLGIEVSFVEDPDDLDAWRAAVRP-NTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIAT-P 197 (436)
T ss_pred ------hcCeEEEEEECCCCCHHHHHHhCCC-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-c
Confidence 00112233342 3489999999975 5778888888777887776 99999999999999999998752 1
Q ss_pred CCCccccccccCCcccEE--EecccCCC-ccceeeEEe
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALV 328 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~ 328 (465)
.. ........|++ +++|.++| |--+|.++.
T Consensus 198 ~~-----~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 198 YL-----IRPLEHGADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred cc-----CCchhcCCCEEEEecccccCCCCCeEEEEEE
Confidence 11 11112335665 56799986 533444433
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-13 Score=137.77 Aligned_cols=164 Identities=20% Similarity=0.178 Sum_probs=116.9
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++...+++++++++.+.+.+++++||++|+.+++..... ++++||+....|++........-
T Consensus 58 y~R~~~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~-----------~Gd~Vi~~~~~y~~t~~~~~~~l-- 124 (433)
T PRK08134 58 YSRISNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMG-----------AGSHIVASSALYGGSHNLLHYTL-- 124 (433)
T ss_pred eecCcChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEeCCccHHHHHHHHHHH--
Confidence 44556677899999999999977789999999999999886541 58899999988876543221100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++.+|+++++++|++ ++++|+++...+..|.+.+ +++|.++|++||+++|+|.++.. +
T Consensus 125 -------~~~Gi~v~~vd~~d~~~l~~~i~~-~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a~-~ 191 (433)
T PRK08134 125 -------RRFGIETTFVKPGDIDGWRAAIRP-NTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFTT-P 191 (433)
T ss_pred -------hhCCeEEEEECCCCHHHHHHhcCC-CCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCcc-c
Confidence 011233456666689999999985 5678888887666677766 99999999999999999999852 1
Q ss_pred CCCccccccccCCcccEEEec--ccCCC-ccceeeEEe
Q 012368 294 RTGYLWAHEHYGIFPDIMTLA--KPLAG-GLPIGAALV 328 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~s--K~lg~-G~~iG~v~~ 328 (465)
.. ........|++++| |.++| |-.+|.++.
T Consensus 192 ~~-----~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 192 YL-----LRPFEHGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred cc-----CCchhcCCCEEEeccccccCCCCCceEEEEE
Confidence 11 11123446777655 99986 544554443
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=137.06 Aligned_cols=308 Identities=14% Similarity=0.070 Sum_probs=176.0
Q ss_pred CCHHHHHHHHHHHhhc---ccccCCCCCHHHHHHHHHHHhhcCC---CeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012368 115 GDADWIKAVVDQANVL---THVSNMYYSIPQIELAKRLVACSFA---DRVFFS-NTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~~---~~v~~~-~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
-+|+|++|+.+..... .|.. .-......+..+.+++.++. .+|+|+ +|||.+++.++.....
T Consensus 14 ~~~~v~~a~~~~~~~~~~~~hr~-~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~---------- 82 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFGTSHRQ-APVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIE---------- 82 (361)
T ss_pred CCHHHHHHHHhcCccccccCcCC-hHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhccc----------
Confidence 4578888876542111 1111 11123366778888888872 368875 6799999999875531
Q ss_pred CCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHH
Q 012368 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE 267 (465)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~ 267 (465)
++.+++. .+.+|....-.+... +....+..++....+.++..+. .++++|.+..+.+..|++.|
T Consensus 83 --~~~l~i~-~G~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~lV~~~h~et~tG~~~p--- 146 (361)
T TIGR01366 83 --KKSLHLS-FGEFSSKFAKAVKLA---------PWLGEPIIVTADPGSAPEPQAD-PGVDVIAWAHNETSTGVAVP--- 146 (361)
T ss_pred --ccccEEe-cCHHHHHHHHHHHhh---------hccCCceEEecCCCCCCCCccC-CCCCEEEEcccCCccceecc---
Confidence 2223333 343343222111100 0000122222211123333333 36788988888888888876
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCCC----
Q 012368 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGDH---- 341 (465)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~~---- 341 (465)
+++| ++++|+++|+|-+++ +| +.....+ . .|++++| |++++--.++.+++++++++.+.+...
T Consensus 147 -i~~I---~~~~g~~~iVDavqs-~g--~~~idv~--~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~ 215 (361)
T TIGR01366 147 -VRRP---EGSDDALVVIDATSG-AG--GLPVDIA--E--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRW 215 (361)
T ss_pred -cccc---cccCCCeEEEEcCcc-cc--CCCCCHH--H--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCC
Confidence 5555 689999999999997 43 2222222 2 5888776 988752125666778887766542110
Q ss_pred ----------------cCCCCChHH-HHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccc
Q 012368 342 ----------------GSTFAGSPL-VCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLG 399 (465)
Q Consensus 342 ----------------~~t~~~~~~-~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g 399 (465)
..|.+..++ ...+..++++.+.+. ...++.+++.+++++.+.++....+...... ...
T Consensus 216 ~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~ 295 (361)
T TIGR01366 216 VPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQ 295 (361)
T ss_pred CchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhccc
Confidence 133343333 344666777776543 2345555555566655555421111111100 011
Q ss_pred eEEEEEe--cCChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 400 LIIGIEF--DVSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 400 ~~~~i~~--~~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
....+.+ +.+..++.+.|.++||.+.++. .++++|++.....|.+|+++++++|+++++++
T Consensus 296 ~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 296 VVGTIDFVDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred ceEEEECCCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 1122333 2466788899999999987642 13679999999999999999999999988753
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-12 Score=132.45 Aligned_cols=310 Identities=16% Similarity=0.101 Sum_probs=179.7
Q ss_pred CCHHHHHHHHHHHhhccccc-C---CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVS-N---MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~-~---~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
-++++.+++.+.+..+.... . ....+....+++.++++++.+.++++++|+.|+.+++.... ++
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l~------------~G 165 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVLLALNALA------------AG 165 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhC------------CC
Confidence 45889999998876542110 0 11123356888999999998889999999999998886432 57
Q ss_pred ceEEEEcCCcc--cCccc---cccccCCCCcCCCCCCCCCCceEeeC---CCHHHHHhhcCCCCeEEEEEccc-CC-CCC
Q 012368 191 TEFVSFTNSFH--GRTMG---ALALTSKEHYRSPFEPVMPGVNFVEY---GNIEATRKLIQPGKTAAVFVEPI-QG-EGG 260 (465)
Q Consensus 191 ~~ii~~~~~yh--g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~a~vi~ep~-~~-~~G 260 (465)
++||+.+..+. |.+.. .+...| ..+.+++. .++++++++++++ +++|+++.. |. ..|
T Consensus 166 deVIvs~~e~~~~ggs~~i~~~~~~~G------------~~l~~v~~~~~t~~~dle~aI~~~-TklV~~vh~sN~~i~G 232 (464)
T PRK04311 166 KEVIVSRGELVEIGGAFRIPDVMRQAG------------ARLVEVGTTNRTHLRDYEQAINEN-TALLLKVHTSNYRIEG 232 (464)
T ss_pred CEEEEcchhhhhcCcchhhHHHHHHCC------------cEEEEECCCCCCCHHHHHHhcCcc-CeEEEEEcCCCccccc
Confidence 88988876433 21111 111111 11222322 3688999999854 566655544 33 123
Q ss_pred --cccCCHHHHHHHHHHHHHhCCEEEEeccccCCC---CC---CccccccccCCcccEEEec--ccCCCccceeeEEeCH
Q 012368 261 --IYSATKEFLQFLRDACDDAGALLVFDEVQCGLG---RT---GYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE 330 (465)
Q Consensus 261 --~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g---r~---g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~ 330 (465)
..++ +++|.++|++||+++|+|....-++ .. +.....+......|++++| |.++|. ..|++++++
T Consensus 233 ~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~ 307 (464)
T PRK04311 233 FTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGKK 307 (464)
T ss_pred cCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEcH
Confidence 2334 9999999999999999999421111 11 1111122223457999988 999875 479999999
Q ss_pred HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC--chH------------HHHHHHHHHHHHHHHHHHHHcCCC-ceee
Q 012368 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAF------------LASVSKKGHYFKETLKQKLARNPH-VKDV 395 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~--~~~------------~~~~~~~~~~l~~~l~~~~~~~~~-~~~~ 395 (465)
++++.+........+...-...++..++|....+ +.+ .++..++...+.+.|+..... +. ...+
T Consensus 308 ~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~-~~~~~~~ 386 (464)
T PRK04311 308 ELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGA-AFAVEVV 386 (464)
T ss_pred HHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCC-CeeEEEE
Confidence 9988776322222233334445555555553311 111 245555666666666543210 10 1111
Q ss_pred -----eccceE-------EEEEec---CChHHHHHHHHHC--CceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 396 -----RGLGLI-------IGIEFD---VSATPVVDACRDS--GLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 396 -----~~~g~~-------~~i~~~---~~~~~~~~~l~~~--Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
-|.|.+ +.+.+. ....++.+.|++- .|+.+... +.+.+-+ -+..++|++.++++|.+++.
T Consensus 387 ~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~~~--~~~~ld~-r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 387 PSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRIED--GRLLLDL-RTLEEEDEERLAAALLEALN 463 (464)
T ss_pred EccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEEEC--CEEEEEe-CcCCHHHHHHHHHHHHHHhh
Confidence 122222 223331 3467888888864 35554322 4455543 35688899999999988753
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=138.52 Aligned_cols=296 Identities=11% Similarity=0.056 Sum_probs=170.0
Q ss_pred HHHHHHHHHhhcCCC---eEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc-cCCCCc
Q 012368 142 QIELAKRLVACSFAD---RVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHY 216 (465)
Q Consensus 142 ~~~la~~l~~~~~~~---~v~~~~sG~-eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~ 216 (465)
..++++++++.+|.. ..+++++|| .++.+++.+++... .+++.||+..-+ |-.+..++.. +..+.+
T Consensus 107 ~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~--------~~gd~VI~p~~t-h~S~~kAi~~~G~~pv~ 177 (444)
T TIGR03531 107 TNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKR--------PKAKYVIWPRID-QKSCIKAISTAGFEPRV 177 (444)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcC--------CCCCEEEEECcC-hHHHHHHHHHcCCeEEE
Confidence 567788888888844 799999999 68888877665211 136778888776 5444444443 322222
Q ss_pred CCCCCCCCCCceEeeCCCHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 217 RSPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.+.. ....... -|+++|+++|++ +.+.+|+..|....+|.. +.+++|.++|++||+++|+|++|....
T Consensus 178 Vd~~-~d~~~~~----iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~----ddL~eIa~la~k~gI~lIvDaAyg~~~ 248 (444)
T TIGR03531 178 IETV-LDGDELT----TDVEDIERAIEEIGPDNILCVLSTTSCFAPRSP----DDIEEIAKICANYDIPHIVNNAYGLQS 248 (444)
T ss_pred eeee-ecCcCCC----cCHHHHHHHHHhccCCCEEEEEEcCCcCCCcch----hCHHHHHHHHHHcCCEEEEECcCcCcC
Confidence 1100 0001111 189999999973 345666666653333332 349999999999999999999997321
Q ss_pred CCCccccccccCC-cccEEEe--cccCCCccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC--chH
Q 012368 294 RTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAF 367 (465)
Q Consensus 294 r~g~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~--~~~ 367 (465)
..-.......... ..|++++ +|.+......|.++. ++++++.+.....+.. .+..++.+...++....+ +++
T Consensus 249 ~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~~--~~s~~~~~~~~ll~~G~~g~~~l 326 (444)
T TIGR03531 249 NKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGRA--SASPSLDVLITLLSLGSKGYLEL 326 (444)
T ss_pred hhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCCC--CChHHHHHHHHHHHhCHHHHHHH
Confidence 0000000011111 2466654 598875222455556 6778777764322222 223455555555543322 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-ceeeeccceEEEEEec----CChHHHHHHHHHCCce----EeecCC---CC----
Q 012368 368 LASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFD----VSATPVVDACRDSGLL----VLTAGK---GN---- 431 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~i~~~----~~~~~~~~~l~~~Gv~----v~~~~~---~~---- 431 (465)
.++..++.+++.+.|.++..+++. +...+....-+++.++ .+...+...|..++|- |.++.. ++
T Consensus 327 i~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~ 406 (444)
T TIGR03531 327 LKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFK 406 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEECCEEee
Confidence 667777888888888887766652 2222222222334432 3466777888877662 222210 11
Q ss_pred ------------EEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 432 ------------VVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 432 ------------~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++-+..+..++++|+|.++++|++++
T Consensus 407 ~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 407 GYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred cccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 12222235579999999999998753
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-13 Score=130.53 Aligned_cols=310 Identities=10% Similarity=0.011 Sum_probs=184.1
Q ss_pred CCHHHHHHHHHHHhhcccc----cCCC--CC---HHHHHHHHHHHhhcC-C--CeEEecCC-HHHHHHHHHHHHHHHhhh
Q 012368 115 GDADWIKAVVDQANVLTHV----SNMY--YS---IPQIELAKRLVACSF-A--DRVFFSNT-GTEANEAAIKFARKFQRH 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~----~~~~--~~---~~~~~la~~l~~~~~-~--~~v~~~~s-G~eA~~~al~~a~~~t~~ 181 (465)
.|..|++++.+.+...... .... .. ....++.+.|++.++ + .+|+|++| ||+|+++++.....
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~---- 78 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA---- 78 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC----
Confidence 3557888888887642211 0001 11 235667778888887 2 35777755 99999999885542
Q ss_pred cCCCCCCCCceEEEEcCCcccCcccccccc-CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCC
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G 260 (465)
+++++++...+..|....-+.-. +..... ...+ ..++.+..++++.....++.+|.+..+-.++|
T Consensus 79 -------~~~~~l~i~~G~fg~r~~~~a~~~g~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~v~~th~ETstG 144 (349)
T TIGR01364 79 -------EGKVADYIVTGAWSKKAAKEAKKYGVVNVV----ASGK---EGNYTKIPDPSTWEISEDAAYVHYCANETIHG 144 (349)
T ss_pred -------CCCeEEEEECCHHHHHHHHHHHHhCCcEEE----eccc---cCCCCCCCCHHhcCCCCCCCEEEEcCCCCccc
Confidence 46778887777767654222211 110000 0000 01233333333222223677888888777778
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccC
Q 012368 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINY 338 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~ 338 (465)
+..+ ++++.+++++++|-+++ +| +.....+.+ |++++| |++| ...+|++++++++++.+.+
T Consensus 145 v~~~---------~l~~~~~~l~iVDavss-~g--~~~id~~~~----d~~~~ssqK~lg-P~Glg~l~~s~~~~~~~~~ 207 (349)
T TIGR01364 145 VEFR---------ELPDVKNAPLVADMSSN-IL--SRPIDVSKF----GLIYAGAQKNIG-PAGLTVVIVRKDLLGRASR 207 (349)
T ss_pred Eecc---------eecccCCCeEEEEcccc-cc--CccCCHHHc----cEEEEecccccC-CCceEEEEECHHHHhhccc
Confidence 7643 56777899999999987 43 222223332 466665 9886 4458999999998876644
Q ss_pred CC-----------CcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-Ccee-e--e-ccceE
Q 012368 339 GD-----------HGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKD-V--R-GLGLI 401 (465)
Q Consensus 339 ~~-----------~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~-~--~-~~g~~ 401 (465)
.. ...++ +.|.....+..++|+.+.++.-++.+.++...+.+.+.+.+++.+ .... . . ..+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v 287 (349)
T TIGR01364 208 ITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMN 287 (349)
T ss_pred CCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeE
Confidence 21 11222 445566677778888775541134455555555555555555554 2111 1 1 12244
Q ss_pred EEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 402 IGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 402 ~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.+.++. ...++...+.++|+.+.++.. .+.+|+++....|++||+.+++.|++++++
T Consensus 288 ~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 288 VVFTLGNEELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred EEEecCChhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 5565532 125666788899995555432 368999999999999999999999987653
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-13 Score=143.47 Aligned_cols=334 Identities=13% Similarity=0.084 Sum_probs=192.5
Q ss_pred CEEEecccCcccccCCCCCH-HHHHHHHHHHhhc-ccccCCC-----CCHHHHHHHHHHHhhcC--C-C-eEEecCCHHH
Q 012368 98 REYLDLSSGIAVNALGHGDA-DWIKAVVDQANVL-THVSNMY-----YSIPQIELAKRLVACSF--A-D-RVFFSNTGTE 166 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p-~v~~a~~~~~~~~-~~~~~~~-----~~~~~~~la~~l~~~~~--~-~-~v~~~~sG~e 166 (465)
..|+|..+... .+| .|.+++.+.+... .+....+ .....++.+++++++++ . + .|+||+|+|+
T Consensus 35 ~iYLD~Aatt~------~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 35 VVYLDHAGATL------YSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA 108 (805)
T ss_pred CEeEeCCCCCC------CCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence 57999876432 344 4445555554432 1111111 12236678888888887 3 3 5899999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-------CceEeeCCCHHHHH
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-------GVNFVEYGNIEATR 239 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~le 239 (465)
|+.++..... + .+++.||+. ..-|........+.........+.+... ....+. .+.++|+
T Consensus 109 alnlva~~l~-~---------~~gd~Iv~t-~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~-~~~~~l~ 176 (805)
T PLN02724 109 ALKLVGETFP-W---------SSESHFCYT-LENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVV-VKSRGLQ 176 (805)
T ss_pred HHHHHHHHCC-C---------CCCCeEEEe-eccccchHHHHHHHHHcCCeEEeccchhccccccccccccc-cchhhhh
Confidence 9998766432 1 146777774 4555554433221100010101111110 000000 0124555
Q ss_pred hhcC---------CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH---h-----CCEEEEeccccCCCCCCcccccc
Q 012368 240 KLIQ---------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD---A-----GALLVFDEVQCGLGRTGYLWAHE 302 (465)
Q Consensus 240 ~~l~---------~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~---~-----g~llI~DEv~~g~gr~g~~~~~~ 302 (465)
+.++ ..++.+|.+..+.+..|.+.| ++.|.++++. + ++++++|-+|+ +|.. ..+
T Consensus 177 ~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~----piD 247 (805)
T PLN02724 177 RRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS----PPD 247 (805)
T ss_pred hhhhhhhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC----CCC
Confidence 5431 134578888888888898877 5555444432 2 36899999986 4322 233
Q ss_pred ccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCCCcC-C---------C--------------CChHHHHHHHH
Q 012368 303 HYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGDHGS-T---------F--------------AGSPLVCNAAI 356 (465)
Q Consensus 303 ~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~~~~-t---------~--------------~~~~~~~~aa~ 356 (465)
...+.+|.+++| |.+|+...+|++++++++.+.+.+...++ + + +.|.++.++..
T Consensus 248 v~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~ 327 (805)
T PLN02724 248 LSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALR 327 (805)
T ss_pred hhhcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHH
Confidence 334568999887 98876567899999998877766532211 1 1 23455666666
Q ss_pred HHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHc--CCCceee---------eccceEEEEEec-CC-----hHHHHHH
Q 012368 357 AVLDKISN---PAFLASVSKKGHYFKETLKQKLAR--NPHVKDV---------RGLGLIIGIEFD-VS-----ATPVVDA 416 (465)
Q Consensus 357 a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~---------~~~g~~~~i~~~-~~-----~~~~~~~ 416 (465)
++|+.+.+ +...++.+++.+++.+.|.++... .|.+... ...+.++.|.+. .+ ...+...
T Consensus 328 aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l 407 (805)
T PLN02724 328 HGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKL 407 (805)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHH
Confidence 67766543 556677777788887777765211 1111111 124556666662 22 2334443
Q ss_pred HHHCCceEeecC--------------------------------------CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 417 CRDSGLLVLTAG--------------------------------------KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 417 l~~~Gv~v~~~~--------------------------------------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+.++||.++.+. ..+.+|+++.+..|.+|++++++.|++.+.
T Consensus 408 ~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 408 ASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred HHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 446788886431 016799999999999999999999999764
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-12 Score=128.01 Aligned_cols=303 Identities=16% Similarity=0.089 Sum_probs=174.6
Q ss_pred CCHHHHHHHHHHHhhccccc----CCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVS----NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
-++++++++.+.+..+.... ..........+++.++++.+.+..+++++|+.|+.+++..+. ++
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~------------~G 160 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLA------------KG 160 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhC------------Cc
Confidence 56899999999887643110 011123367899999999997778889999999988885432 58
Q ss_pred ceEEEEcCCc---ccCccc--cccccCCCCcCCCCCCCCCCceEeeC---CCHHHHHhhcCCCCeEEEEEccc-CCC-CC
Q 012368 191 TEFVSFTNSF---HGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEY---GNIEATRKLIQPGKTAAVFVEPI-QGE-GG 260 (465)
Q Consensus 191 ~~ii~~~~~y---hg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~a~vi~ep~-~~~-~G 260 (465)
++||+.+..+ .|.... .+...+ ..+.+++. .|+++++++++++ +++|+++.. |.. .|
T Consensus 161 deVIvs~~e~v~~ggs~~i~~~~~~~G------------~~~~~v~~~~~~~l~dle~aI~~~-T~lv~~~h~sN~~~~G 227 (454)
T TIGR00474 161 KEVIVSRGELVEIGGSFRIPDVMEQSG------------AKLVEVGTTNRTHLKDYEDAITEN-TALLLKVHTSNYRIVG 227 (454)
T ss_pred CEEEECCChhhhhcchhhHHHHHHHcC------------CEEEEeCCCCCCCHHHHHHhcCcC-CEEEEEEccCcccccC
Confidence 8888887664 222111 111111 12223332 4789999999764 556555543 332 34
Q ss_pred --cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---------cccccccCCcccEEEec--ccCCCccceeeEE
Q 012368 261 --IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---------LWAHEHYGIFPDIMTLA--KPLAGGLPIGAAL 327 (465)
Q Consensus 261 --~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---------~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~ 327 (465)
..++ +++|.++|++||+++|+|.. +|..+. +..++......|++++| |.++|. ..|+++
T Consensus 228 ~~~~~d----l~~I~~la~~~g~~vivD~~---sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~G~i~ 299 (454)
T TIGR00474 228 FTEEVS----IAELVALGREHGLPVMEDLG---SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QAGIIV 299 (454)
T ss_pred CCCCCC----HHHHHHHHHHcCCeEEEECC---CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eEEEEE
Confidence 2444 99999999999999999963 222211 11122223457999998 999765 378999
Q ss_pred eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch--H------------HHHHHHHHHHHHHHHHHHHH-cCC--
Q 012368 328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA--F------------LASVSKKGHYFKETLKQKLA-RNP-- 390 (465)
Q Consensus 328 ~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~--~------------~~~~~~~~~~l~~~l~~~~~-~~~-- 390 (465)
+++++++.+........+...-+..++..+++.....+. + .++..++...+.+.|++.+. ...
T Consensus 300 g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~ 379 (454)
T TIGR00474 300 GKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELE 379 (454)
T ss_pred ECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEE
Confidence 999988776532211112223334445455554432211 1 23555566666666665321 010
Q ss_pred Ccee--eeccceE-------EEEEe---cCChHHHHHHHHHCC--ceEeecCCCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 391 HVKD--VRGLGLI-------IGIEF---DVSATPVVDACRDSG--LLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 391 ~~~~--~~~~g~~-------~~i~~---~~~~~~~~~~l~~~G--v~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
+... .-|.|++ +.+.+ ...+.++.+.|++.. |+.+.. .+.+.+-+- +..++|++.++++|
T Consensus 380 ~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~~--~~~~~ld~r-~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 380 IVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLRELPPPIIGRIE--DDRFLLDLR-TLLEDEEELLIEAL 453 (454)
T ss_pred EEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCCCEEEEEE--CCEEEEEeC-cCCHHHHHHHHHHh
Confidence 0000 0122332 22333 135678888888665 444322 244555433 55778888887765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-13 Score=133.88 Aligned_cols=293 Identities=18% Similarity=0.170 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHH-hhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCC
Q 012368 140 IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (465)
Q Consensus 140 ~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~-t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (465)
+...++++.++++++.+.+++++||++|+..|+.++... ....+ ..+++.||+..++|.+....+...+..+.+.
T Consensus 63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~---~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~v- 138 (438)
T PRK15407 63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRA---LKPGDEVITVAAGFPTTVNPIIQNGLVPVFV- 138 (438)
T ss_pred hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccC---CCCCCEEEECCCCcHHHHHHHHHcCCEEEEE-
Confidence 346789999999999889999999999999999866311 00000 0268899999999977765544433322211
Q ss_pred CCCCCCCCceEeeCC-CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc
Q 012368 219 PFEPVMPGVNFVEYG-NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~-d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~ 297 (465)
+..+. .++ |++++++++.+ ++++|++.+..++ . ..+++|.++|++||++||+|++|+ +|-.-.
T Consensus 139 ---dvd~~----~~~id~~~le~~i~~-~tkaVi~~~~~G~---p----~dl~~I~~la~~~gi~vIeDaa~a-~G~~~~ 202 (438)
T PRK15407 139 ---DVELP----TYNIDASLLEAAVSP-KTKAIMIAHTLGN---P----FDLAAVKAFCDKHNLWLIEDNCDA-LGSTYD 202 (438)
T ss_pred ---ecCCC----cCCcCHHHHHHHcCc-CCeEEEEeCCCCC---h----hhHHHHHHHHHHCCCEEEEECccc-hhhhcC
Confidence 11110 112 78999999975 5677777765433 2 238999999999999999999997 432101
Q ss_pred cccccccCCcccEEEec----ccCCCccceeeEEeCH-HHHhhccC----CC----------------------------
Q 012368 298 LWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVTE-KVASAINY----GD---------------------------- 340 (465)
Q Consensus 298 ~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~~-~i~~~~~~----~~---------------------------- 340 (465)
. ...|-.-|+.+|| |.+..|- .|+++.++ ++.+.+.. +.
T Consensus 203 g---~~~G~~gd~~~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (438)
T PRK15407 203 G---RMTGTFGDIATLSFYPAHHITMGE-GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYD 278 (438)
T ss_pred C---eeeeccCceEEEeCCCCCCccccC-ceEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccc
Confidence 1 1112223677766 6676442 48888764 44332211 00
Q ss_pred -------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cceE--EEEEec---
Q 012368 341 -------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LGLI--IGIEFD--- 407 (465)
Q Consensus 341 -------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~--~~i~~~--- 407 (465)
.+..+..+.+.++.++.-|+.+ ++..++-+++.+++.+.|..+...........+ ...+ +.+.++
T Consensus 279 ~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 356 (438)
T PRK15407 279 HKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDA 356 (438)
T ss_pred ccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcC
Confidence 1122234556666666666654 344555555555655555432100000111111 1222 233332
Q ss_pred -CChHHHHHHHHHCCceEeec-----CC----------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 408 -VSATPVVDACRDSGLLVLTA-----GK----------------------GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 408 -~~~~~~~~~l~~~Gv~v~~~-----~~----------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
....++.+.|.++||..... .. ...+-+=+....|++|++..++.|+++++
T Consensus 357 ~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 357 GFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred CCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 23578999999999965421 00 01132222344689999999999998874
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-13 Score=120.25 Aligned_cols=278 Identities=20% Similarity=0.202 Sum_probs=175.2
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC--
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-- 232 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 232 (465)
.....+..+|+.+.+.|+--... |+|+|+++.-+-.|....-+.- .+..++..++.
T Consensus 68 ~~tf~isgsGh~g~E~al~N~le-----------Pgd~vLv~~~G~wg~ra~D~~~-----------r~ga~V~~v~~~~ 125 (385)
T KOG2862|consen 68 AQTFVISGSGHSGWEAALVNLLE-----------PGDNVLVVSTGTWGQRAADCAR-----------RYGAEVDVVEADI 125 (385)
T ss_pred CceEEEecCCcchHHHHHHhhcC-----------CCCeEEEEEechHHHHHHHHHH-----------hhCceeeEEecCc
Confidence 34567788899999998875552 7899998877655544222110 11122322221
Q ss_pred ---CCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCccc
Q 012368 233 ---GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309 (465)
Q Consensus 233 ---~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pd 309 (465)
-.+|.+++.+..+++.+|++....+.+|+..+ .++.+.++|++|+++|++|-|-+ +| |..|.++.+++..-
T Consensus 126 G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-lg--gt~F~mDewgVDva 199 (385)
T KOG2862|consen 126 GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-LG--GTEFEMDEWGVDVA 199 (385)
T ss_pred ccCccHHHHHHHHHhcCCceEEEEecCccccccch---HHHHHHHHhhcCCeEEEEechhh-cC--CccceehhhcccEE
Confidence 15899999999888999999998888888654 37778899999999999999987 43 55677888886432
Q ss_pred EEEecccCCCccceeeEEeCHHHHhhccCCCC------------c-----------CCCCChHHHHHHHHHHHHHhcC--
Q 012368 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDH------------G-----------STFAGSPLVCNAAIAVLDKISN-- 364 (465)
Q Consensus 310 i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~------------~-----------~t~~~~~~~~~aa~a~L~~~~~-- 364 (465)
...--|++++.-.++-+..++..++.++..+. . ..+..+.....+..++|..+-+
T Consensus 200 ytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeG 279 (385)
T KOG2862|consen 200 YTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEG 279 (385)
T ss_pred EecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHH
Confidence 22233999873334446677777777654311 0 0111233344555666766644
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe--cCChHHHHHHHHHCCceEeecCC----CCEEEEec
Q 012368 365 -PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGK----GNVVRLVP 437 (465)
Q Consensus 365 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~--~~~~~~~~~~l~~~Gv~v~~~~~----~~~lRi~~ 437 (465)
++..++-++.+++++..|+++--+.=.............+.. ..+..++..++..++.....++. +.++||-.
T Consensus 280 L~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl 359 (385)
T KOG2862|consen 280 LENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGL 359 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEE
Confidence 345566667777887777765111101111111222233333 35778899999998655544432 57899864
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHh
Q 012368 438 -PLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 438 -~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.-..+.+.|+..++.|+.++.+-
T Consensus 360 ~gcna~~e~i~~v~~ll~~alq~~ 383 (385)
T KOG2862|consen 360 LGCNANVEYIDNVVELLKLALQRK 383 (385)
T ss_pred eeccCCcHHHHHHHHHHHHHHhhc
Confidence 23347788999999998887653
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-13 Score=126.59 Aligned_cols=173 Identities=19% Similarity=0.186 Sum_probs=130.7
Q ss_pred HhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccc
Q 012368 127 ANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMG 206 (465)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~ 206 (465)
++..++.+.+..++....|+++++...|--..+.+.||..|+..|+..+.. ++|.||....-|-|.. .
T Consensus 49 l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~-----------aGD~iVss~~LYGGT~-~ 116 (426)
T COG2873 49 LKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAG-----------AGDNIVSSSKLYGGTY-N 116 (426)
T ss_pred CCcCCceeeeccCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhcc-----------CCCeeEeeccccCchH-H
Confidence 444455567777888899999999998755667889999999998876552 6999999988885543 2
Q ss_pred cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 012368 207 ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286 (465)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D 286 (465)
.... .+..+.-.+.++..+|++.++++|++ ++++|++|.+-++++.++. ++.|.++|+++|++||+|
T Consensus 117 lf~~--------tl~~~Gi~v~fvd~~d~~~~~~aI~~-nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVD 183 (426)
T COG2873 117 LFSH--------TLKRLGIEVRFVDPDDPENFEAAIDE-NTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVD 183 (426)
T ss_pred HHHH--------HHHhcCcEEEEeCCCCHHHHHHHhCc-ccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEe
Confidence 2221 12234456778888899999999986 6899999999877777765 999999999999999999
Q ss_pred ccccCCCCCCccccccccCCcccEE--EecccCCC-ccceeeEEeCH
Q 012368 287 EVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVTE 330 (465)
Q Consensus 287 Ev~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~~ 330 (465)
...+. ++.+.-.+...||+ +.+|.+|| |--+|-++...
T Consensus 184 NT~at------pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~ 224 (426)
T COG2873 184 NTFAT------PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDG 224 (426)
T ss_pred cCCCc------ceecchhhcCCCEEEEeecccccCCccccceEEEeC
Confidence 87542 12344444456877 46799998 88887777654
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-13 Score=130.77 Aligned_cols=308 Identities=9% Similarity=-0.013 Sum_probs=185.7
Q ss_pred CCHHHHHHHHHHHhhcc------cccCCCCC---HHHHHHHHHHHhhcC-CC--eE-EecCCHHHHHHHHHHHHHHHhhh
Q 012368 115 GDADWIKAVVDQANVLT------HVSNMYYS---IPQIELAKRLVACSF-AD--RV-FFSNTGTEANEAAIKFARKFQRH 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~------~~~~~~~~---~~~~~la~~l~~~~~-~~--~v-~~~~sG~eA~~~al~~a~~~t~~ 181 (465)
-+++|++|+.+.+.... +....... +...+..++|++.++ ++ +| ++++||+.|+++++.....
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~---- 89 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG---- 89 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC----
Confidence 57899999998874320 00001111 346778888888887 22 45 5558899999998875552
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccc-cCCCCcCCCCCCCCCCceEeeCCCHHHHHh-hcCCCCeEEEEEcccCCCC
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPGKTAAVFVEPIQGEG 259 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~a~vi~ep~~~~~ 259 (465)
+++++++...+..|....-+.- -+..... ....+. ...+..++++ .+++ ++.+|.+..+..++
T Consensus 90 -------~g~~~l~i~~G~fg~r~~~~a~~~g~~~~~----~~~~~~---g~~~~~~~~~~~l~~-~~~~V~~th~eTst 154 (360)
T PRK05355 90 -------GGKKADYVDTGSWSKKAIKEAKKYGEVNVA----ASSEDD---GFTYIPPLDEWQLSD-DAAYVHYTSNETID 154 (360)
T ss_pred -------CCCeEEEEECCHHHHHHHHHHHHhCCceEE----eccccc---CCCCCCChhhccCCC-CCCEEEEccCCCcc
Confidence 4667777777766665422211 1111000 000000 0012334444 6654 57788888888888
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhcc
Q 012368 260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAIN 337 (465)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~ 337 (465)
|++.++ +++| ||+++|+|-+++ +| +.....+.+ |++++| |.+| ...+|++++++++++.+.
T Consensus 155 Gv~~~~---i~~i------~g~l~vVDavss-~g--~~~idv~~~----d~~~~ssqK~lg-P~Glg~l~~s~~~l~~~~ 217 (360)
T PRK05355 155 GTEFHE---LPDT------GDVPLVADMSSD-IL--SRPIDVSKF----GLIYAGAQKNIG-PAGLTIVIVREDLLGRAL 217 (360)
T ss_pred eEecCc---cccc------CCCcEEEEcCcc-cc--CccCCHHHc----cEEEEecccccc-CCceEEEEECHHHHhhcc
Confidence 887532 5444 899999999987 43 222223322 466666 9885 455899999999988776
Q ss_pred CC-C----------Cc-CCCCChHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHcCCCcee-e---eccce
Q 012368 338 YG-D----------HG-STFAGSPLVCNAAIAVLDKISNP-AFLASVSKKGHYFKETLKQKLARNPHVKD-V---RGLGL 400 (465)
Q Consensus 338 ~~-~----------~~-~t~~~~~~~~~aa~a~L~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~---~~~g~ 400 (465)
+. . .. ..++.|.....+..++|+.+.+. + ++++.++.+.+.+.+.+.+++.+.... . ...+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG-~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~ 296 (360)
T PRK05355 218 PSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGG-VAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRM 296 (360)
T ss_pred cCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCc
Confidence 52 1 11 12344566677777888887554 3 344444444444444444444443211 1 11234
Q ss_pred EEEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 401 IIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 401 ~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+.+.++. ...++...+.++|+.+..+.. .+.+|+++....|.+||+.+++.|+++++.
T Consensus 297 v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 297 NVPFTLADEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred EEEEEcCChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 55666532 225666788899999854432 367999999999999999999999997753
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.55 E-value=9e-14 Score=122.13 Aligned_cols=165 Identities=24% Similarity=0.218 Sum_probs=113.0
Q ss_pred HHHHHHHHHhhc--CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 142 QIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~--~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
..++.+++++.+ +.+++.+++||++|+..+++.++. ++++|++.++.|++.........+.....
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~g~~~~~-- 68 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG-----------PGDEVIVDANGHGSRYWVAAELAGAKPVP-- 68 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC-----------CCCEEEEeecccceehhhHHHhcCCEEEE--
Confidence 357888899998 788999999999999999998762 47789999999998873222211111110
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
.+....... ..+.+.+++.....+++++++++.++++|...+ +++|.++|+++|+++|+|++|.++......
T Consensus 69 -v~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~- 140 (170)
T cd01494 69 -VPVDDAGYG--GLDVAILEELKAKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG- 140 (170)
T ss_pred -eccCCCCcc--chhhhhhhhccccCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc-
Confidence 011010000 012235555444557889999988888887665 589999999999999999999876443221
Q ss_pred cccccCCcccEEEec--ccCCCccceeeEEeC
Q 012368 300 AHEHYGIFPDIMTLA--KPLAGGLPIGAALVT 329 (465)
Q Consensus 300 ~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~ 329 (465)
.......+|+++.| |.+++ .++|+++++
T Consensus 141 -~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 141 -VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred -cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 12223457888776 99987 788988764
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-12 Score=137.71 Aligned_cols=299 Identities=15% Similarity=0.192 Sum_probs=176.5
Q ss_pred HHHHHHHHHhhcCCCeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 142 QIELAKRLVACSFADRVFFS-NTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 142 ~~~la~~l~~~~~~~~v~~~-~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
..++.++|++.+|.+.+.+. ++|++|+..++.+++.|....+.. .+++|++. ..-|+.........+-....
T Consensus 544 i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~---~r~~vlis-~~aH~snp~sa~~~G~~vv~--- 616 (954)
T PRK05367 544 IDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEG---HRDVCLIP-SSAHGTNPASAVMAGMKVVV--- 616 (954)
T ss_pred HHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCC---CCCEEEEE-chhhhhhHHHHHHCCCEEEE---
Confidence 56788899999996666554 578888877777777664322211 24445555 45566554443332221111
Q ss_pred CCCCCCceEeeCCCHHHHHhhcCCC--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc
Q 012368 221 EPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298 (465)
Q Consensus 221 ~~~~~~~~~~~~~d~~~le~~l~~~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~ 298 (465)
.+...... -|+++|+++++++ ++++|++.-. ++.|.+..+ +++|.++|+++|+++++|.++.+- ..+.
T Consensus 617 v~~d~~G~----iD~~~L~~~i~~~~~~la~V~it~p-st~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~a-l~~l- 686 (954)
T PRK05367 617 VACDENGN----IDLDDLRAKAEEHADNLAAIMITYP-STHGVFEET---IREICEIVHEHGGQVYLDGANMNA-QVGL- 686 (954)
T ss_pred ECCCCCCC----cCHHHHHHHHhccCCCeEEEEEEcC-CCCeeecCC---HHHHHHHHHHcCCEEEEECcChhh-ccCC-
Confidence 11111111 2789999999742 4666554432 233444222 999999999999999999998521 1111
Q ss_pred ccccccCCcccEEEec--ccCC-----CccceeeEEeCHHHHhhccCCCC--------cCCCCChHH----HHHHHHHHH
Q 012368 299 WAHEHYGIFPDIMTLA--KPLA-----GGLPIGAALVTEKVASAINYGDH--------GSTFAGSPL----VCNAAIAVL 359 (465)
Q Consensus 299 ~~~~~~~~~pdi~t~s--K~lg-----~G~~iG~v~~~~~i~~~~~~~~~--------~~t~~~~~~----~~~aa~a~L 359 (465)
. ..-....|+++++ |+|+ ||-.+|++.+++.+...+..... .++.+..+. ....+...+
T Consensus 687 -~-~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi 764 (954)
T PRK05367 687 -A-RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYI 764 (954)
T ss_pred -C-ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 1 1112346888776 9885 24567888888766544421110 122222333 222344455
Q ss_pred HHhcCchHHHHHH---HHHHHHHHHHHHHHHcCCCcee----eeccceEEEE-Eec----CChHHHHHHHHHCCceEeec
Q 012368 360 DKISNPAFLASVS---KKGHYFKETLKQKLARNPHVKD----VRGLGLIIGI-EFD----VSATPVVDACRDSGLLVLTA 427 (465)
Q Consensus 360 ~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~----~~~~g~~~~i-~~~----~~~~~~~~~l~~~Gv~v~~~ 427 (465)
..+..+.+.+..+ .+..++.++|.+. ++.... ..-...++.+ .++ ....++.++|.+.|+.....
T Consensus 765 ~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~---~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~ 841 (954)
T PRK05367 765 RMMGAEGLRQATEVAILNANYIAKRLKDH---YPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTM 841 (954)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHhh---cCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeec
Confidence 5555566555554 6777888877663 221110 0001122222 111 34678999999999987652
Q ss_pred C--CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 428 G--KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 428 ~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
. ..+.++++|.-..+++|||++++++..+..+..+
T Consensus 842 ~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 842 SFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred CCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 1368999999999999999999999998887765
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-12 Score=129.42 Aligned_cols=299 Identities=20% Similarity=0.217 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
.+..+++.+.++.... . ...+...+++++++++++.+.++.++||+.|+.+|++++-. .++++||+.
T Consensus 5 ~e~~~~v~~~l~s~~~--~-~~g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~----------~~gdeVi~p 71 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWL--S-TYGPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGL----------GPGDEVIVP 71 (363)
T ss_dssp HHHHHHHHHHHHHTCC--S-SSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTG----------GTTSEEEEE
T ss_pred HHHHHHHHHHHHhCCc--c-CCCHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCC----------CcCceEecC
Confidence 3456677777766421 1 11466889999999999999999999999999999997431 158999999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
.-+|+.....+...+..+.+. ...+.... -|++++++++++ ++++|++....|.. .. +++|.++|
T Consensus 72 ~~t~~~~~~ai~~~G~~pv~~----Di~~~~~~---id~~~~~~~i~~-~t~ai~~~h~~G~~---~d----~~~i~~~~ 136 (363)
T PF01041_consen 72 AYTFPATASAILWAGAEPVFV----DIDPETLN---IDPEALEKAITP-KTKAILVVHLFGNP---AD----MDAIRAIA 136 (363)
T ss_dssp SSS-THHHHHHHHTT-EEEEE-----BETTTSS---B-HHHHHHHHHT-TEEEEEEE-GGGB----------HHHHHHHH
T ss_pred CCcchHHHHHHHHhccEEEEE----eccCCcCC---cCHHHHHHHhcc-CccEEEEecCCCCc---cc----HHHHHHHH
Confidence 999987776666665544432 11111110 189999999986 46777777666543 22 89999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCC---C--------
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG---D-------- 340 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~---~-------- 340 (465)
+++|++||.|-+|+ +|- .+.-...|-.-|+.+|| |.+..| -.|+++.+ +++.+.+... .
T Consensus 137 ~~~~i~lIeD~a~a-~g~---~~~g~~~G~~gd~~~fSf~~~K~i~~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (363)
T PF01041_consen 137 RKHGIPLIEDAAQA-FGA---RYKGRPVGSFGDIAIFSFHPTKIITTG-EGGAVVTNDPELAERARALRNHGRSRDAFRR 211 (363)
T ss_dssp HHTT-EEEEE-TTT-TT----EETTEETTSSSSEEEEESSTTSSS-SS-S-EEEEESTHHHHHHHHHHTBTTEETSECST
T ss_pred HHcCCcEEEccccc-cCc---eeCCEeccCCCCceEecCCCCCCCcCC-CCeeEEecHHHHHHHhhhhhccCcCcccccc
Confidence 99999999999997 431 11111223334777776 888644 23788775 4555544221 1
Q ss_pred ------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee---e----ccceEEEEEec
Q 012368 341 ------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV---R----GLGLIIGIEFD 407 (465)
Q Consensus 341 ------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~----~~g~~~~i~~~ 407 (465)
.+..+..+.+..+.+++-|+.+ ++..++-+++.+++ .+.+...+.+... . .....+.+.++
T Consensus 212 ~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y----~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~ 285 (363)
T PF01041_consen 212 YRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRY----REALAGIPGIKPPPIPDGAERSSYYRFPIRLP 285 (363)
T ss_dssp TEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHH----HHHHTTGTTEEEEGCGTTTEEBCESSEEEEET
T ss_pred ccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHH----HHHHhcCCCccccccccccccccccccccccc
Confidence 1223445666666666666543 23333334444444 4444444433211 1 11122334443
Q ss_pred C----ChHHHHHHHHHCCceEeecCC---------------------------CCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 408 V----SATPVVDACRDSGLLVLTAGK---------------------------GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 408 ~----~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
. ...++.+.|.++||.+.+... ...+.+-.....++++++.+++.|+
T Consensus 286 ~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 286 DEALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp CCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 2 467899999999998764320 0124444456678999999888774
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-12 Score=134.69 Aligned_cols=289 Identities=17% Similarity=0.197 Sum_probs=177.8
Q ss_pred HHHHHHHHHhhcCCCeEEecC-CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 142 QIELAKRLVACSFADRVFFSN-TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 142 ~~~la~~l~~~~~~~~v~~~~-sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
..+|.+++++.+|.+.+-+-+ ||+.+..+++.+.+.|...+++. .|++||+ ..+-||.........+..
T Consensus 545 i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~---~r~~vLI-p~saHgtNpasa~~~Gie------ 614 (954)
T PRK12566 545 IDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQS---QRDICLI-PSSAHGTNPASAQMAGMR------ 614 (954)
T ss_pred HHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEe-cccccccCHHHHHHCCCE------
Confidence 567888999999988776665 89999888888888887655543 3555554 456676654433222211
Q ss_pred CCCCCCceEeeC-----CCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 221 EPVMPGVNFVEY-----GNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 221 ~~~~~~~~~~~~-----~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
+..+|. -|+++|+++++ +.++++|++...+.. |++. +.+++|.++|+++|+++++|-++. .+
T Consensus 615 ------Vv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~-Gv~e---~~V~eI~~iah~~Galv~vDgA~~-~a 683 (954)
T PRK12566 615 ------VVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTH-GVYE---EGIREICEVVHQHGGQVYMDGANL-NA 683 (954)
T ss_pred ------EEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcC-ceec---chHHHHHHHHHHcCCEEEEEeeCh-hh
Confidence 122222 18999999996 245666666544433 3332 239999999999999999999875 21
Q ss_pred CCCccccccc-cCCcccEEEec--ccCCC-----ccceeeEEeCHHHHhhccCC----------CCc---CCCCChHHHH
Q 012368 294 RTGYLWAHEH-YGIFPDIMTLA--KPLAG-----GLPIGAALVTEKVASAINYG----------DHG---STFAGSPLVC 352 (465)
Q Consensus 294 r~g~~~~~~~-~~~~pdi~t~s--K~lg~-----G~~iG~v~~~~~i~~~~~~~----------~~~---~t~~~~~~~~ 352 (465)
-. .... -.+..|+++++ |+|++ |.-+|.+.+++.+...+... ..+ ....++.+..
T Consensus 684 ~~----~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l 759 (954)
T PRK12566 684 QV----GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASIL 759 (954)
T ss_pred cc----CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHH
Confidence 11 1111 13456888776 98852 35567777777555444311 011 1122333444
Q ss_pred HHHHHHHHHhcCchHHHHHHH----HHHHHHHHHHHHHHcCCCceeeeccce-E--EEEEec-------CChHHHHHHHH
Q 012368 353 NAAIAVLDKISNPAFLASVSK----KGHYFKETLKQKLARNPHVKDVRGLGL-I--IGIEFD-------VSATPVVDACR 418 (465)
Q Consensus 353 ~aa~a~L~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~g~-~--~~i~~~-------~~~~~~~~~l~ 418 (465)
.++...++.+..+ +.++.+ +..+++++|.+ .++.... ...+. + +.+.+. .+..++.++|.
T Consensus 760 ~~A~~Yi~~lG~e--Lk~aa~~ailnAnYla~rL~~---~~~v~~~-~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~ 833 (954)
T PRK12566 760 PISWMYIAMMGPQ--LADASEVAILSANYLANQLGG---AFPVLYR-GRNERVAHECILDLRPLKAQTGISEEDVAKRLM 833 (954)
T ss_pred HHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHhHh---hCCCCcC-CCCCCeeeEEEEEccccccccCCCHHHHHHHHH
Confidence 5555556655443 333333 56677766655 2332221 11111 1 222221 34577999999
Q ss_pred HCCceEeecC--CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 419 DSGLLVLTAG--KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 419 ~~Gv~v~~~~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.|+...... ..+.+|++|.-..+++|||+++++|..+.++.+
T Consensus 834 d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 834 DYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred HCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 9998764321 147899999999999999999999999888754
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=131.96 Aligned_cols=292 Identities=18% Similarity=0.211 Sum_probs=184.5
Q ss_pred HHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 142 QIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 142 ~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
..++.++|++.+|.+ --++.++|+.|...++.++|.|...+++. .| .+++...+-||+........+.
T Consensus 532 i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~---~R-~~vlip~saHgtnPasa~~~G~------- 600 (939)
T TIGR00461 532 IAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGEN---HR-NICLIPVSAHGTNPASAAMAGM------- 600 (939)
T ss_pred HHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCC---CC-CEEEEEccccCcCHHHHHHCCC-------
Confidence 668999999999965 45667888888887888888776444432 24 4555556778776554333222
Q ss_pred CCCCCCceEeeC-----CCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-C
Q 012368 221 EPVMPGVNFVEY-----GNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-L 292 (465)
Q Consensus 221 ~~~~~~~~~~~~-----~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~ 292 (465)
.+..+|. -|+++|++++++ .++++|++...+.. |.+.++ +++|.++|+++|.++++|-++.. .
T Consensus 601 -----~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst~-G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al 671 (939)
T TIGR00461 601 -----QVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPSTH-GVFEPT---IQHACDIVHSFGGQVYLDGANMNAQ 671 (939)
T ss_pred -----EEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCcC-ceeccc---HHHHHHHHHHcCCEEEEEecChhhC
Confidence 1222222 189999999973 46777766544334 555433 89999999999999999999853 2
Q ss_pred CCCCccccccccCCcccEEEec--ccCC-----CccceeeEEeCHHHHhhccCCCC----------------cCCCCChH
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLA--KPLA-----GGLPIGAALVTEKVASAINYGDH----------------GSTFAGSP 349 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~s--K~lg-----~G~~iG~v~~~~~i~~~~~~~~~----------------~~t~~~~~ 349 (465)
+ + ....-....|+++++ |+|+ ||-.+|.+.+++++...+-.... .+...++.
T Consensus 672 ~--~---l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a 746 (939)
T TIGR00461 672 V--G---LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSA 746 (939)
T ss_pred C--C---CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcH
Confidence 1 1 111112457888875 9887 45778999999876544321100 11123445
Q ss_pred HHHHHHHHHHHHhcCchHH---HHHHHHHHHHHHHHHHHHHcCCCceeeeccceE---EEEEec-------CChHHHHHH
Q 012368 350 LVCNAAIAVLDKISNPAFL---ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI---IGIEFD-------VSATPVVDA 416 (465)
Q Consensus 350 ~~~~aa~a~L~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~---~~i~~~-------~~~~~~~~~ 416 (465)
+....+...|..+..+.+. +....+..++.++|.+ .++.. .....+.+ +.+++. ....++.++
T Consensus 747 ~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~---~~~~l-~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakr 822 (939)
T TIGR00461 747 SILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD---HYPIL-FVGTLKHVAHECILDLRPLKAKTGIEAIDVAKR 822 (939)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc---cCccc-ccCCCCceeEEEEEeccchhhhcCCCHHHHHHH
Confidence 5556666777776655543 3344466677777765 22221 11111221 223332 356889999
Q ss_pred HHHCCceEeecC-C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 417 CRDSGLLVLTAG-K-GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 417 l~~~Gv~v~~~~-~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
|++.|+...... + .+.+-|.|.-..|++|||++++++.++-+++++
T Consensus 823 L~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 823 LQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred HHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999998764322 1 246778888888999999999999888777655
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-12 Score=124.26 Aligned_cols=303 Identities=17% Similarity=0.199 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
.+..+++.+.++.+... .-+...++++++++++|...++.++|||.|+.+|++++- -+ ++|.||+.
T Consensus 15 ~~e~~~v~~vl~sg~i~----~G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~--ig--------~GDeVI~p 80 (374)
T COG0399 15 EEELAAVQEVLKSGWLT----GGPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALA--IG--------PGDEVIVP 80 (374)
T ss_pred hHHHHHHHHHHHcCCee----cChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcC--CC--------CCCEEEec
Confidence 45667777777764322 134467899999999999999999999999999999543 11 68999999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+-+|-.....++..+..+.+.+ ..++..- -|++.+|++|.+. +++||.-...|.. .. +++|.++|
T Consensus 81 s~TfvATan~i~~~Ga~PVFvD----id~~T~n---id~~~ie~aIt~~-tKAIipVhl~G~~---~d----m~~i~~la 145 (374)
T COG0399 81 SFTFVATANAVLLVGAKPVFVD----IDPDTLN---IDPDLIEAAITPR-TKAIIPVHLAGQP---CD----MDAIMALA 145 (374)
T ss_pred CCchHHHHHHHHHcCCeEEEEe----cCCcccC---CCHHHHHHHcccC-CeEEEEehhccCC---CC----HHHHHHHH
Confidence 9888766655555555544331 1111110 1899999999864 7777766555543 33 89999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCC-CC---------
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG-DH--------- 341 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~-~~--------- 341 (465)
++||++||.|.+|+ +|-. +.-...|-.-|+.+|| |.++.| -.|+++.+ +++.+.++.. .|
T Consensus 146 ~~~~l~vIEDaAqa-~Ga~---y~gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~ 220 (374)
T COG0399 146 KRHGLPVIEDAAQA-HGAT---YKGKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFK 220 (374)
T ss_pred HHcCCeEEEEcchh-ccCe---ecCcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCcccc
Confidence 99999999999987 5321 1111223334677776 999866 56888875 5666655321 11
Q ss_pred ------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-Cceeeeccce-----EEEEEec--
Q 012368 342 ------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKDVRGLGL-----IIGIEFD-- 407 (465)
Q Consensus 342 ------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~-----~~~i~~~-- 407 (465)
+..+..+-+.++.+++-|+.+ +++.++-++..++..+.|+ +.+ ........+. ++.+.++
T Consensus 221 y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~----~~~~~~~p~~~~~~~~~~~~~~i~~~~~ 294 (374)
T COG0399 221 YLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRREIAQIYAEALK----GLPGITLPPEPDGAVHAWHLYTILVDEE 294 (374)
T ss_pred ceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh----cCCCccccCCCCCceeeeeeeEEEecCC
Confidence 112223334444444444432 3444444444444444444 332 1111111121 1222222
Q ss_pred -CChHHHHHHHHHCCce----EeecC--------------C--------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 408 -VSATPVVDACRDSGLL----VLTAG--------------K--------GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 408 -~~~~~~~~~l~~~Gv~----v~~~~--------------~--------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..-..+...|.++||. ..|.. . .+.+.+=.....+++++++.++.|++++..
T Consensus 295 ~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 295 GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 2346788999999655 23311 0 123554334567999999999999988753
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=113.50 Aligned_cols=334 Identities=17% Similarity=0.084 Sum_probs=202.4
Q ss_pred EeCCCCEEEecccCcccccCCCCCHHHHHHHHH-HHhhcccc----cC---CCCCHHHHHHHHHHHhhcC--CCeEEecC
Q 012368 93 YDAEGREYLDLSSGIAVNALGHGDADWIKAVVD-QANVLTHV----SN---MYYSIPQIELAKRLVACSF--ADRVFFSN 162 (465)
Q Consensus 93 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~-~~~~~~~~----~~---~~~~~~~~~la~~l~~~~~--~~~v~~~~ 162 (465)
-+.+|-.||| .++||..++.+.+...+ +.+.+... .+ ..+-..-+.|..+|+...| ..+|..++
T Consensus 27 ~lp~~viyLd------gnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~d 100 (407)
T COG3844 27 ALPGGVIYLD------GNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTD 100 (407)
T ss_pred cCCCCeEEee------ccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeC
Confidence 3446667887 34688655455554444 33332211 11 1122334567778887777 67888888
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCc-cccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhh
Q 012368 163 TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT-MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKL 241 (465)
Q Consensus 163 sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 241 (465)
|.+--+.-.+-++...+ +++.||+++..-...- ..+..+. ... ....++..+ .++++++++
T Consensus 101 tts~nl~k~L~aalr~~---------~~r~vIv~E~~~fpTdly~a~g~~---~~~----~~~~~~~~~--~~P~~~~~~ 162 (407)
T COG3844 101 TTSINLFKVLAAALRPQ---------EGRRVIVSEGDNFPTDLYIAEGLA---DLL----GIGYDLEGV--IAPRALEEA 162 (407)
T ss_pred CcchHHHHHHHHHhccC---------CCceEEeecCCCCCcchhhhcchh---hhh----cccccceee--eChHHHHHh
Confidence 77765555555554322 3667777776532221 1111110 000 000111111 256789999
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccccCCcccEEEecccCCCc
Q 012368 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPDIMTLAKPLAGG 320 (465)
Q Consensus 242 l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~~~pdi~t~sK~lg~G 320 (465)
++. +++.|++..++.-+|.+.. +.+|.+++++||++++.|=+|+- |. .......|...-|-|--|.+.||
T Consensus 163 ~~d-d~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHsa----Gavp~~Lh~~gaDfaigcsyKYLNgG 233 (407)
T COG3844 163 ITD-DVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHSA----GAVPVDLHAAGADFAIGCSYKYLNGG 233 (407)
T ss_pred hcc-ceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhccc----CCcceeecccCCCeeeeeeceeccCC
Confidence 874 7999999999999998876 99999999999999999999872 22 11222334433344556999864
Q ss_pred -cceeeEEeCHHHHhhccC-C-------------------CCcCCC---CChHHHHHHHHHHHHHhcCc---hHHHHHHH
Q 012368 321 -LPIGAALVTEKVASAINY-G-------------------DHGSTF---AGSPLVCNAAIAVLDKISNP---AFLASVSK 373 (465)
Q Consensus 321 -~~iG~v~~~~~i~~~~~~-~-------------------~~~~t~---~~~~~~~~aa~a~L~~~~~~---~~~~~~~~ 373 (465)
-..+++.+.++..+...+ . ....-| +.+.+++++...+|++..+- ++.++--.
T Consensus 234 PGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSla 313 (407)
T COG3844 234 PGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLA 313 (407)
T ss_pred CCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhH
Confidence 233444444443333211 1 001111 12456777778888887553 34444444
Q ss_pred HHHHHHHHHHHHHHcCCCce----eeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEec-CCCCcHHHHHH
Q 012368 374 KGHYFKETLKQKLARNPHVK----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP-PLIISEQELDQ 448 (465)
Q Consensus 374 ~~~~l~~~l~~~~~~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~-~~~~t~e~i~~ 448 (465)
+.+++.+.++.....+++.. .-...|.-+.+.++ ...++++.|.++||+..-..+ +++||.| |++.+-+|+-.
T Consensus 314 LTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp-~~~~V~qaLi~rGVigD~R~P-~vlRfgftPlY~~~~DVw~ 391 (407)
T COG3844 314 LTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP-HGYQVMQALIDRGVIGDFREP-DVLRFGFTPLYVSFVDVWD 391 (407)
T ss_pred HHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC-cHHHHHHHHHHcCccccccCC-CeeeecCccceechhHHHH
Confidence 55666666655544444211 12245777776663 677899999999998766554 8999977 78899999999
Q ss_pred HHHHHHHHHHHhh
Q 012368 449 AVEILCKTLPVLD 461 (465)
Q Consensus 449 ~l~~l~~~l~~~~ 461 (465)
+++.|++++.+..
T Consensus 392 AV~~L~evL~t~a 404 (407)
T COG3844 392 AVDALEEVLDTLA 404 (407)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998753
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-12 Score=127.22 Aligned_cols=303 Identities=11% Similarity=0.017 Sum_probs=171.5
Q ss_pred CCHHHHHHHHHHHhhccccc--CC-CC---C---HHHHHHHHHHHhhcC---CCeEEecCC-HHHHHHHHHHHHHHHhhh
Q 012368 115 GDADWIKAVVDQANVLTHVS--NM-YY---S---IPQIELAKRLVACSF---ADRVFFSNT-GTEANEAAIKFARKFQRH 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~--~~-~~---~---~~~~~la~~l~~~~~---~~~v~~~~s-G~eA~~~al~~a~~~t~~ 181 (465)
-++.|++|+.+.+....... .. .. . ....+.++.++++++ .+.|+|++| ||+|++.++..... .+
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~-~~- 87 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG-DK- 87 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC-CC-
Confidence 57899999999875432110 00 11 1 336678888888887 356888876 99999998886531 00
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC------CC-HHHHHhhcCCCCeEEEEEcc
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY------GN-IEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d-~~~le~~l~~~~~a~vi~ep 254 (465)
.+++. |+..+..|.+...+...+ ..+..++. .+ .+..+..++ .++++|.+..
T Consensus 88 ------~~~~~-i~~g~~~~~~~~~a~~~g-------------~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~lV~~~h 146 (355)
T cd00611 88 ------GTADY-VVTGAWSAKAAKEAKRYG-------------GVVVIVAAKEEGKYTKIPDVETWDLA-PDAAYVHYCS 146 (355)
T ss_pred ------CeEEE-EECCHHHHHHHHHHHhcC-------------CCcEEEecccccCCCCCCCHhhcCCC-CCCCEEEEeC
Confidence 02333 333222221111111111 11111211 12 222223343 3567788877
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHh
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVAS 334 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~ 334 (465)
+.+..|+..+ ++++.||+++++|-+++ +| +.....+.++ .++.+--|.+| ...+|++++++++.+
T Consensus 147 ~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g--~~~idv~~~~--~~~ss~~K~lG-P~G~g~l~~~~~~~~ 211 (355)
T cd00611 147 NETIHGVEFD---------EVPDTGGVPLVADMSSN-IL--SRPIDVSKFG--VIYAGAQKNLG-PAGVTVVIVRKDLLG 211 (355)
T ss_pred CcccccEEcc---------eecccCCCeEEEEcccc-cc--CCCCCHHHhC--EEEeecccccC-CCceEEEEECHHHHh
Confidence 7777777532 45566999999999998 43 2222333333 22222348774 456899999999887
Q ss_pred hccCCC-----------CcCCC-CChHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHcCCCce-ee---e-
Q 012368 335 AINYGD-----------HGSTF-AGSPLVCNAAIAVLDKISNP-AFLASVSKKGHYFKETLKQKLARNPHVK-DV---R- 396 (465)
Q Consensus 335 ~~~~~~-----------~~~t~-~~~~~~~~aa~a~L~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~---~- 396 (465)
.+.+.. ...++ +.|.....+..++|+.+.+. + .+++.++...+.+.|.+.+++.|.+. .. .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg-~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~ 290 (355)
T cd00611 212 KARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGG-VEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRA 290 (355)
T ss_pred hcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhCccccccCCCHHH
Confidence 665421 11112 34555677777888877544 3 34444444444444444444443211 11 1
Q ss_pred ccceEEEEEecCC--hHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 397 GLGLIIGIEFDVS--ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 397 ~~g~~~~i~~~~~--~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
..+..+.+.++.. ..++...+.++|+.+.++.. .+.+|+++...+|++||+++++.|+++
T Consensus 291 rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 291 RSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred cCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 1224466665331 24555677889997444422 368999999999999999999999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-12 Score=131.71 Aligned_cols=312 Identities=13% Similarity=0.066 Sum_probs=176.6
Q ss_pred CHHHHHHHHHHHhhcC-CC--------eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc
Q 012368 139 SIPQIELAKRLVACSF-AD--------RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA 209 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~-~~--------~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~ 209 (465)
...+.++.+++++.++ ++ .-++++|||+||..|+.+||.......... ..+.-+++.+..-|.+..-+..
T Consensus 121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~-~~~~~vv~~S~~aH~Sv~Kaa~ 199 (490)
T PLN02880 121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKN-ALEKLVVYASDQTHSALQKACQ 199 (490)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhccc-ccCCeEEEEcCCchHHHHHHHH
Confidence 3457788889998887 33 268899999999999999997542111000 0123355555555766655544
Q ss_pred ccCCCCcCCCCCCCCC--CceEeeCCCHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCE
Q 012368 210 LTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL 282 (465)
Q Consensus 210 ~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l 282 (465)
+.+-........|... +.. -|+++|+++|+. ..+.+|+..--..+.|.+-| +++|.++|++||++
T Consensus 200 ~lGlg~~~v~~Vp~d~~~~~~----md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iw 271 (490)
T PLN02880 200 IAGIHPENCRLLKTDSSTNYA----LAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGKIAKSNGMW 271 (490)
T ss_pred HcCCCHHHEEEeecCCCcCCc----CCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHHHHHHcCCE
Confidence 3332110000011110 111 178999998852 23455555554455566655 99999999999999
Q ss_pred EEEeccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeCHH--HHhhccCC----CC-----cCCC---
Q 012368 283 LVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTEK--VASAINYG----DH-----GSTF--- 345 (465)
Q Consensus 283 lI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~~--i~~~~~~~----~~-----~~t~--- 345 (465)
+++|-+|.|+...-..+-....++ ..|.+++. |.+...++.|+++.+.. +...+... .. ..++
T Consensus 272 lHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~ 351 (490)
T PLN02880 272 FHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYK 351 (490)
T ss_pred EEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChh
Confidence 999999876422111111112343 57877764 99988899999998742 22222110 00 0011
Q ss_pred -----CChHHHHHHHHHHHHHhcCchHHHHHH---HHHHHHHHHHHHHHHcCCCceee-eccceEEEEEec-C--Ch---
Q 012368 346 -----AGSPLVCNAAIAVLDKISNPAFLASVS---KKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFD-V--SA--- 410 (465)
Q Consensus 346 -----~~~~~~~~aa~a~L~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~-~--~~--- 410 (465)
.+..+.......+|+.+..+.+.+.++ ++.+++.+.+ .+.+.+..+ +....++.+.+. . +.
T Consensus 352 ~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l----~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~ 427 (490)
T PLN02880 352 DWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLV----AQDSRFEVVTPRIFSLVCFRLVPPKNNEDNG 427 (490)
T ss_pred ccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH----hcCCCEEEecCCceEEEEEEEeCCCCChhhH
Confidence 111222334445566666666666666 5555555444 344432222 223334455542 1 11
Q ss_pred ----HHHHHHHHHCCce-Eeec--CCCCEEEEecC-CCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 411 ----TPVVDACRDSGLL-VLTA--GKGNVVRLVPP-LIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 411 ----~~~~~~l~~~Gv~-v~~~--~~~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.++.++|.+.|-. +.+. ....++|+++. ..+++++++.+++.|.+...++...
T Consensus 428 ~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 428 NKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK 488 (490)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3466666666644 3332 11257999875 4456799999999999988876543
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-12 Score=127.06 Aligned_cols=234 Identities=12% Similarity=0.176 Sum_probs=144.2
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+.+..++...+|+++++++.+.+.++.++||+.|+.+++.... .++|+||+....|.+........-
T Consensus 58 Y~r~~~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all-----------~~GD~Vl~~~~~yg~t~~~~~~~~-- 124 (384)
T PRK06434 58 YTRWGNPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLI-----------KKGKRILSISDLYGQTFYFFNKVL-- 124 (384)
T ss_pred eeCCCChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEecCccchHHHHHHHHH--
Confidence 4556677789999999999998889999999999999998654 168999998877754442221100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++.++.+.++ +++.++.+|++|.+.+..+.+.+ +++|.++|++++ +++|.++...
T Consensus 125 -------~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s~- 188 (384)
T PRK06434 125 -------KTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFASP- 188 (384)
T ss_pred -------HhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCCc-
Confidence 0111234455544444444 44446789999987666655554 999999999998 4569986321
Q ss_pred CCCccccccccCCcccEEEec--ccCCC-c-cceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIMTLA--KPLAG-G-LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~s--K~lg~-G-~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
. .....+...|++++| |.++| | .-.|+++. ++++.+.+...........+|+.++.++..|+.+ +..+
T Consensus 189 ~-----~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL--~~R~ 261 (384)
T PRK06434 189 Y-----NQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL--GLRM 261 (384)
T ss_pred c-----cCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH--HHHH
Confidence 1 222234457888766 99986 4 44677766 4556555432111122334566555444444322 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcee------------eeccceEEEEEec
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKD------------VRGLGLIIGIEFD 407 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~------------~~~~g~~~~i~~~ 407 (465)
++-.++...+.+. ++.+|.+.. .++.|.++.++++
T Consensus 262 ~r~~~~a~~~a~~----L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~ 308 (384)
T PRK06434 262 EKHNKNGMELARF----LRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR 308 (384)
T ss_pred HHHHHHHHHHHHH----HHcCCCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence 4444555554444 445553322 2467889999984
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=133.40 Aligned_cols=225 Identities=16% Similarity=0.132 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHhhcCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012368 138 YSIPQIELAKRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~~~~v~~-~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
+.....++.+++++.++.+++++ ++|+++|+..++..+.. ++++|++..++|..........+..+.+
T Consensus 57 ~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~-----------~gd~Vlv~~~~h~s~~~~~~~~g~~~~~ 125 (294)
T cd00615 57 PTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCG-----------PGDKILIDRNCHKSVINGLVLSGAVPVY 125 (294)
T ss_pred CChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCC-----------CCCEEEEeCCchHHHHHHHHHCCCEEEE
Confidence 44457788888898888666655 99999999998876541 6889999998876554333222222222
Q ss_pred CCCCCCCCCCceEeeCCCHHHHHhhcCC-CCeE-EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-CC
Q 012368 217 RSPFEPVMPGVNFVEYGNIEATRKLIQP-GKTA-AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-LG 293 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~a-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~g 293 (465)
..+ ....+.......|+++++++++. .+++ +++++| +. .|.+.+ +++|.++|+++|+++|+||+|.. +.
T Consensus 126 v~~--~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~-~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~ 197 (294)
T cd00615 126 LKP--ERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TY-YGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFR 197 (294)
T ss_pred ecC--ccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CC-CCEecC----HHHHHHHHHhcCCeEEEECcchhhhc
Confidence 111 00011000011388999999863 3444 445555 33 566554 89999999999999999999864 22
Q ss_pred CCCccccccccCCcccEE--EecccCCCccceee-EEeCHHHH--hhccC-CCCcCCCCChHHHHHHHHHHHHHhc--Cc
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGA-ALVTEKVA--SAINY-GDHGSTFAGSPLVCNAAIAVLDKIS--NP 365 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~-v~~~~~i~--~~~~~-~~~~~t~~~~~~~~~aa~a~L~~~~--~~ 365 (465)
..+. ..........|++ +++|+++ |++.|+ +..+.+.. +.+.. .....+.+.+.+.+++..++++.+. .+
T Consensus 198 ~~~~-~~~~~~~~~~div~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~ 275 (294)
T cd00615 198 FHPI-LPSSAAMAGADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGK 275 (294)
T ss_pred cCcc-cCcchhhcCCcEEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhH
Confidence 2221 1111112235666 4669874 455433 33433311 11111 1122344566677777777776653 24
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 012368 366 AFLASVSKKGHYFKETLK 383 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~ 383 (465)
++.+++.++.+.+++.+.
T Consensus 276 ~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 276 ELVEELIELALYARQEIN 293 (294)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566777777777776653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-12 Score=124.73 Aligned_cols=287 Identities=19% Similarity=0.183 Sum_probs=175.5
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++....|++.++++.+.+..+.++||..|+..++..... ++|+|+..+..|.|.........
T Consensus 57 Y~R~~nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~-----------~GD~vl~~~~~YG~t~~~~~~~l-- 123 (396)
T COG0626 57 YSRTGNPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLK-----------AGDHVLLPDDLYGGTYRLFEKIL-- 123 (396)
T ss_pred cccCCCccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcC-----------CCCEEEecCCccchHHHHHHHHH--
Confidence 45566777999999999999999999999999999998776652 68999999999866543332211
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
....-++.+++..|.+++++++.++++.+|++|+..++.--++. +++|+++|+++|+++|+|..+...
T Consensus 124 -------~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfatP- 191 (396)
T COG0626 124 -------QKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFATP- 191 (396)
T ss_pred -------HhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCcccc-
Confidence 11223445555556777777776457899999987555444444 999999999999999999986532
Q ss_pred CCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeCH-HHHhhccCCCC-cCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVTE-KVASAINYGDH-GSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~~-~i~~~~~~~~~-~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
..+..+....||++ .+|.++| + .=.|+++++. ++.+.+..... ......+|..+...+-.|+.+ .-.
T Consensus 192 -----~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL--~~R 264 (396)
T COG0626 192 -----VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTL--ALR 264 (396)
T ss_pred -----cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchH--HHH
Confidence 12333344467774 6699998 4 6667777655 45444411111 111223555554444444322 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCC--hHHHHHHHHHC-------
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVS--ATPVVDACRDS------- 420 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~--~~~~~~~l~~~------- 420 (465)
.++..++...+.+.| +.+|.+.. ..+.|.++.|++... ..+|.+.|.--
T Consensus 265 m~~~~~nA~~IA~~L----~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~~~a~SlG 340 (396)
T COG0626 265 MERHNENALKIAEFL----ADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLG 340 (396)
T ss_pred HHHHHHHHHHHHHHH----hcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCccEEeccCC
Confidence 344444444444433 34453322 225789999999442 23344333211
Q ss_pred Cc---eEeec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 421 GL---LVLTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 421 Gv---~v~~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|+ +..|. | .++.+|+++.+. +++.+++-|+++++.+
T Consensus 341 gveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlE----d~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 341 GVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLE----DVEDLIADLEQALAKA 395 (396)
T ss_pred CcccccccccccCcccCCHhHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHHhh
Confidence 11 11110 1 146799987764 5566666677666543
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=122.64 Aligned_cols=331 Identities=14% Similarity=0.132 Sum_probs=187.6
Q ss_pred CEEEecccCcccccCCCCCHHHHHH-HHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKA-VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a-~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~ 176 (465)
.-|||+.+..++ +.+.++ +...+. +.- .+..++...+|++.+++++|.+.+++++||+.|...+..+
T Consensus 38 ~v~iDLltDsgT-------~aMs~~q~a~~~~-GDe--~yag~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l-- 105 (450)
T TIGR02618 38 DVYIDLLTDSGT-------NAMSDKQWAGLMM-GDE--AYAGSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQI-- 105 (450)
T ss_pred ceEEEcccCCCc-------HHHHHHHHHHhhh-cch--hhcCCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHh--
Confidence 468999987663 445555 333221 111 1234455789999999999999999999999998865322
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCC-CCCCCceEeeC---CCHHHHHhhcCCC---CeEE
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFE-PVMPGVNFVEY---GNIEATRKLIQPG---KTAA 249 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~d~~~le~~l~~~---~~a~ 249 (465)
..+ +++.| ..+.|...+...+...+......... ..... ...|+ -|+++|+++|++. .++.
T Consensus 106 -~l~--------pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~-~~~p~~GniD~~~Le~aI~~~~~~~~~l 173 (450)
T TIGR02618 106 -AIK--------PGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQ-LNIPFKGNVDLKKLQKLIDEVGADKIPY 173 (450)
T ss_pred -CCC--------CcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccc-cCCCCCCCcCHHHHHHHhccccCcccCc
Confidence 121 56655 55555343333222222211100000 00000 00111 1899999999842 2334
Q ss_pred EE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC-----------CCCccc---cccccCCcccEEEec
Q 012368 250 VF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-----------RTGYLW---AHEHYGIFPDIMTLA 314 (465)
Q Consensus 250 vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g-----------r~g~~~---~~~~~~~~pdi~t~s 314 (465)
|. +.++|..|| .+.+.+.+++|+++|++||+.||.|-++. ++ ..+... ..+.+ -..|.+++|
T Consensus 174 V~~e~t~N~~GG-~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gNA~~I~~re~g~~~~~i~ei~~e~~-~~aD~~~~S 250 (450)
T TIGR02618 174 ICLAVTVNLAGG-QPVSMANMREVRELCEAHGIKVFYDATRC-VENAYFIKEREQGYEDKSIAEILKEMM-SYADGCTMS 250 (450)
T ss_pred eEEEEecccCCC-eeCCHHHHHHHHHHHHHcCCEEEEEccch-hhChhhhhcccccccCCCHHHHHHHHh-ccCcEEEEe
Confidence 44 444444445 56688899999999999999999999875 21 111100 00000 124665554
Q ss_pred ccC-CCccceeeEEe--CHHHHhhccCC--C--CcCCCCC-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 012368 315 KPL-AGGLPIGAALV--TEKVASAINYG--D--HGSTFAG-SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 315 K~l-g~G~~iG~v~~--~~~i~~~~~~~--~--~~~t~~~-~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
+. .+|.|+|.+++ ++++++.++.. . ...|+++ ..-.+.|...+|+...+..+.++-....++|.+.|.+.
T Consensus 251 -~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~- 328 (450)
T TIGR02618 251 -GKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA- 328 (450)
T ss_pred -eccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC-
Confidence 33 23446555554 67887776542 1 1223433 22244454555665545566666666778888888775
Q ss_pred HcCCCceeeeccceEEEEEec----------CChHHHHHHHH-HCCceEeecC-----------C-----CCEEEEecC-
Q 012368 387 ARNPHVKDVRGLGLIIGIEFD----------VSATPVVDACR-DSGLLVLTAG-----------K-----GNVVRLVPP- 438 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~----------~~~~~~~~~l~-~~Gv~v~~~~-----------~-----~~~lRi~~~- 438 (465)
..|++. +..|..+.++.. -++..++.+|. +.||--.-.| . -..+|+.+|
T Consensus 329 -Gvpv~~--p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaipr 405 (450)
T TIGR02618 329 -GVPIVE--PVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPR 405 (450)
T ss_pred -CCcccC--CCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeecccc
Confidence 444422 345666666652 24566777765 4455432111 0 145898876
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 012368 439 LIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 439 ~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
-+-|.+++|...++|..+.++.
T Consensus 406 r~yt~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 406 RVYTYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred ccccHhHHHHHHHHHHHHHhhH
Confidence 3458999999999998877653
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-11 Score=121.21 Aligned_cols=333 Identities=14% Similarity=0.133 Sum_probs=183.5
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
.-|||+.+..++ +...++...++..+.- .+..++...+|++.+++++|.+.+++++||+.|+.+++.+..
T Consensus 45 ~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd--~Yagd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v- 114 (460)
T PRK13237 45 DVYIDLLTDSGT-------NAMSDRQWAGMMIGDE--AYAGSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAI- 114 (460)
T ss_pred cEEEECcccCCc-------hhccHHHHHHHhhcch--hhcCCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCC-
Confidence 468999998764 2233442333322111 123345578899999999999999999999999998644221
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC-C-CCCCC-ceEeeCC-CHHHHHhhcCCC---CeEEE
Q 012368 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF-E-PVMPG-VNFVEYG-NIEATRKLIQPG---KTAAV 250 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~-d~~~le~~l~~~---~~a~v 250 (465)
+ +++.| ....+...+...+...+.. +.... . ...+. .....++ |+++|+++|++. .++.+
T Consensus 115 --~--------pGd~V--p~n~~f~Tt~ahI~~~Ga~-fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV 181 (460)
T PRK13237 115 --K--------PGQYV--PGNMYFTTTRYHQELNGGI-FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYI 181 (460)
T ss_pred --C--------CcCEE--CCccchHhhHHHHHhCCcE-EEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCce
Confidence 1 45643 2222222222212222211 11000 0 00000 0001111 899999999732 23333
Q ss_pred -EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC-----------CCCcccc--ccccCCcccEEEec--
Q 012368 251 -FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-----------RTGYLWA--HEHYGIFPDIMTLA-- 314 (465)
Q Consensus 251 -i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g-----------r~g~~~~--~~~~~~~pdi~t~s-- 314 (465)
++.++|..|| .+.+.+.+++|.++|++||+.||.|-++. +| +.|.... .....-.-|++|||
T Consensus 182 ~a~itvn~~GG-qpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~ 259 (460)
T PRK13237 182 CLAVTVNLAGG-QPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGK 259 (460)
T ss_pred EEEEecccCCC-eeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCC
Confidence 3444555545 45677889999999999999999999875 32 1111000 00001135788776
Q ss_pred ccCCCccceeeEEe-CHHHHhhccCC----CCcCCCCChHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012368 315 KPLAGGLPIGAALV-TEKVASAINYG----DHGSTFAGSPL-VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 315 K~lg~G~~iG~v~~-~~~i~~~~~~~----~~~~t~~~~~~-~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
|.++.+. .|+++. ++++.+.++.. ....||++-.- -+.|....|....+.++.++-.+..++|.+.|.+. .
T Consensus 260 K~~~~~~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~--G 336 (460)
T PRK13237 260 KDCLVNI-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA--G 336 (460)
T ss_pred CCCCCCC-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC--C
Confidence 6555422 366665 46777776543 12335544322 34444444554445566666666777777777663 4
Q ss_pred CCCceeeeccceEEEEEec----------CChHHHHHHHH-HCCceEeec-----------CC-----CCEEEEecC-CC
Q 012368 389 NPHVKDVRGLGLIIGIEFD----------VSATPVVDACR-DSGLLVLTA-----------GK-----GNVVRLVPP-LI 440 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~~----------~~~~~~~~~l~-~~Gv~v~~~-----------~~-----~~~lRi~~~-~~ 440 (465)
.|++. +..|.-+.++.. -++..++.+|. +.||--.-. +. -..+|+.+| -+
T Consensus 337 vpv~~--p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~ 414 (460)
T PRK13237 337 VPIVE--PVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRV 414 (460)
T ss_pred Cceec--CCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeecccccc
Confidence 44432 333444445431 24566777765 445543211 00 145898876 34
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 012368 441 ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 441 ~t~e~i~~~l~~l~~~l~~~ 460 (465)
-|.+++|...++|..+.++.
T Consensus 415 yt~~h~~~v~~~~~~~~~~~ 434 (460)
T PRK13237 415 YTYAHMDVVADSVIKLYKHR 434 (460)
T ss_pred ccHHHHHHHHHHHHHHHHhH
Confidence 58999999999998877653
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.8e-12 Score=126.02 Aligned_cols=165 Identities=17% Similarity=0.141 Sum_probs=110.5
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+.....+...++++.+++..+.+..++++||++|+.+++..+. .++++||+....|++.........
T Consensus 63 Y~r~~~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll-----------~~Gd~VI~~~~~y~~t~~~~~~~l-- 129 (437)
T PRK05613 63 YSRLTNPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLA-----------GAGDHIVTSPRLYGGTETLFLVTL-- 129 (437)
T ss_pred eeCccChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhc-----------CCCCEEEECCCccHHHHHHHHHHH--
Confidence 4455677789999999999987788888889999998887553 168899998888866532111100
Q ss_pred CCcCCCCCCCCCCceEee-CCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 214 EHYRSPFEPVMPGVNFVE-YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
......+.+++ ..|++++++++++ ++++|++|...++.|.+.+ +++|+++|+++|+++|+|.++..
T Consensus 130 -------~~~Gi~v~~vd~~~d~e~l~~~l~~-~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a~- 196 (437)
T PRK05613 130 -------NRLGIEVTFVENPDDPESWQAAVQP-NTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIAT- 196 (437)
T ss_pred -------HhcCeEEEEECCCCCHHHHHHhCCc-cCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCcc-
Confidence 01112344443 3479999999986 4667777765555556666 99999999999999999999852
Q ss_pred CCCCccccccccCCcccEEEec--ccCCC-ccce-eeEEeC
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLA--KPLAG-GLPI-GAALVT 329 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~s--K~lg~-G~~i-G~v~~~ 329 (465)
+.. +.......|++++| |.++| |--+ |+++.+
T Consensus 197 g~~-----~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~ 232 (437)
T PRK05613 197 AAL-----VRPLELGADVVVASLTKFYTGNGSGLGGVLIDG 232 (437)
T ss_pred ccc-----cChHHhCCCEEEeeccceecCCCcceeEEEEec
Confidence 111 11112235777655 99987 5444 444433
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-10 Score=119.25 Aligned_cols=311 Identities=13% Similarity=0.083 Sum_probs=177.8
Q ss_pred CHHHHHHHHHHHhhcC-CC--------eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc
Q 012368 139 SIPQIELAKRLVACSF-AD--------RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA 209 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~-~~--------~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~ 209 (465)
...+.++.++|++.++ ++ .-+|++||+|||..|+.+||........... ..+-+++.+..-|-+..-+..
T Consensus 169 t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~-~~~~vvy~S~~aH~Sv~KAa~ 247 (539)
T PLN02590 169 TELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTL-LPQLVVYGSDQTHSSFRKACL 247 (539)
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccC-CCCEEEEecCCchHHHHHHHH
Confidence 3447778888888887 33 2678999999999999999875321110000 112355555555655544443
Q ss_pred ccCCCCcCCCCCCCCCCceEeeC-------CCHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 012368 210 LTSKEHYRSPFEPVMPGVNFVEY-------GNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277 (465)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 277 (465)
+.+-.. ..+..+|. -|+++|+++|+. ..+.+|+..--..+.|.+-| |++|.++|+
T Consensus 248 ilGlg~---------~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i~~ 314 (539)
T PLN02590 248 IGGIHE---------ENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNIAK 314 (539)
T ss_pred HcCCCc---------ccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHHHH
Confidence 322211 11112221 178999999852 12344554444444566544 999999999
Q ss_pred HhCCEEEEeccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeCHH--HHhhccCC----CC-------
Q 012368 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTEK--VASAINYG----DH------- 341 (465)
Q Consensus 278 ~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~~--i~~~~~~~----~~------- 341 (465)
+||++|++|-+|.|+...-...-.-..++ ..|-+++. |.+...+..|.++.+.. +.+.+... ..
T Consensus 315 ~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~ 394 (539)
T PLN02590 315 KYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDT 394 (539)
T ss_pred HhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCccccccc
Confidence 99999999999987632211111111243 36777764 99988899999988753 22222100 00
Q ss_pred ---cC--CC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cceEEEEEecC---C--
Q 012368 342 ---GS--TF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LGLIIGIEFDV---S-- 409 (465)
Q Consensus 342 ---~~--t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~i~~~~---~-- 409 (465)
.. +. .+-.+.......+|+.+..+.+.+.+++..+ +.+.+.+.+.+.+.+.-+.. .=.++.|.+.. .
T Consensus 395 ~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~-lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~ 473 (539)
T PLN02590 395 VVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVN-LAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDED 473 (539)
T ss_pred CCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHH
Confidence 00 11 1223445555666776656665555444332 23344444445553332221 22223333311 1
Q ss_pred -----hHHHHHHHHHCCceEe-ecC--CCCEEEEec-CCCCcHHHHHHHHHHHHHHHHHhhhcC
Q 012368 410 -----ATPVVDACRDSGLLVL-TAG--KGNVVRLVP-PLIISEQELDQAVEILCKTLPVLDSNS 464 (465)
Q Consensus 410 -----~~~~~~~l~~~Gv~v~-~~~--~~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~~~ 464 (465)
..++.+.|.+.|.... +.. ...++|+++ +..+++++++.+++.|.+...++.+++
T Consensus 474 ~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~~~ 537 (539)
T PLN02590 474 QCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTRND 537 (539)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 1356666777776543 321 125789876 566789999999999999988887654
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=119.31 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=138.9
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+....++....+++.+++..+...++.++||..|+..|++... +.+++|+.++..|.|..........
T Consensus 71 Ysr~~nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~-----------~~g~~iV~~~~~Y~gT~~~l~~~~~- 138 (409)
T KOG0053|consen 71 YSRSGNPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLL-----------PAGDHIVATGDVYGGTLRILRKFLP- 138 (409)
T ss_pred cccCCCCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhc-----------CCCCcEEEeCCCcccHHHHHHHHHH-
Confidence 3455667788899999999998889999999999999999776 2688999999999776533222110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.......++...|++.+++++++ ++.+|++|..-++...++. +++|+++|+++|+++|+|+...++
T Consensus 139 --------~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p- 204 (409)
T KOG0053|consen 139 --------KFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP- 204 (409)
T ss_pred --------HhCceeeeechhhHHHHHHhhcc-CceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc-
Confidence 11123345555678888888876 6889999987555544444 999999999999999999986543
Q ss_pred CCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHH
Q 012368 294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~ 360 (465)
..++......||++ .+|.++| + .=.|.++.+ +++...+........++.+|+.+.-....++
T Consensus 205 -----~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglk 271 (409)
T KOG0053|consen 205 -----YNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLK 271 (409)
T ss_pred -----cccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcc
Confidence 23444445578885 5699998 3 667888885 7777766543333445667776665444443
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-10 Score=116.28 Aligned_cols=282 Identities=14% Similarity=0.127 Sum_probs=171.0
Q ss_pred HHHHHHHHHhhcC-CC---eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcC
Q 012368 142 QIELAKRLVACSF-AD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR 217 (465)
Q Consensus 142 ~~~la~~l~~~~~-~~---~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 217 (465)
+.++.+++++.++ ++ .-.+|+||||||..|+.++|.+. .+.+++.+..-|-+..-+..+-+-....
T Consensus 135 E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~----------~~~vvy~S~~aH~Sv~KAa~llgi~~~~ 204 (470)
T PLN02263 135 EVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF----------PDGILYASRESHYSVFKAARMYRMECVK 204 (470)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc----------CCcEEEEcCCccHHHHHHHHhcCCcceE
Confidence 6778888888887 22 47899999999999999999753 2336666666676655444433322111
Q ss_pred CCCCCCCCCceEeeCCCHHHHHhhcCCCC--eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC-----EEEEecccc
Q 012368 218 SPFEPVMPGVNFVEYGNIEATRKLIQPGK--TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGA-----LLVFDEVQC 290 (465)
Q Consensus 218 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-----llI~DEv~~ 290 (465)
.|...... -|+++|+++|..+. +.+|+..--..+.|.+-| +++|.++|++||+ +|++|-++.
T Consensus 205 ---Vp~d~~g~----mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~G 273 (470)
T PLN02263 205 ---VDTLVSGE----IDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALF 273 (470)
T ss_pred ---eccCCCCc----CcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccch
Confidence 11111111 18999999886332 445544443334465544 9999999999997 999999998
Q ss_pred CCCC----CCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCC-----CCcCCCCCh--HHHHHHHHH
Q 012368 291 GLGR----TGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG-----DHGSTFAGS--PLVCNAAIA 357 (465)
Q Consensus 291 g~gr----~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~--~~~~~aa~a 357 (465)
|+-. .-..+ + +....|-++++ |.++..++.|.++.++..++.+... ....|..++ ........+
T Consensus 274 G~~lPf~~~~~~~--d-f~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~ 350 (470)
T PLN02263 274 GLMMPFVKRAPKV--T-FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 350 (470)
T ss_pred hhHhhhccccccc--C-CCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHH
Confidence 7521 10011 1 11236667765 8888889999999997665444221 011122222 123455566
Q ss_pred HHHHhcCchHHHHHH---HHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEE
Q 012368 358 VLDKISNPAFLASVS---KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVR 434 (465)
Q Consensus 358 ~L~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lR 434 (465)
+|+.+..+++.+.++ ++.+++.+.|++ .+.........+.+.+.. +.. .+..+|..+...+ +.++
T Consensus 351 ~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~----~g~~~~~~p~s~~V~f~~--p~~----~~~~~gW~L~~~~--~~~H 418 (470)
T PLN02263 351 TLNRKGYRGFQKEVQKCLRNAHYLKDRLRE----AGISAMLNELSSTVVFER--PKD----EEFVRRWQLACQG--NIAH 418 (470)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHh----CCCeEEeCCCceEEEEec--Cch----HHhhcceEEccCC--CcEE
Confidence 777666555555444 344555555544 343333334444444432 221 1235677666543 5688
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 435 LVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 435 i~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.+...++.+.+|++++.|++..+.
T Consensus 419 ivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 419 VVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 8776667889999999999887764
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-10 Score=103.80 Aligned_cols=290 Identities=17% Similarity=0.183 Sum_probs=175.1
Q ss_pred CHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCC
Q 012368 139 SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (465)
.++...+-+.|++++|.|.+.+|+|.-||-..+|..+. ..+..++.+..-|-.+..+....+......
T Consensus 60 kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~------------~~gd~vV~D~~aHYttyvAAEragl~v~eV 127 (382)
T COG1103 60 KPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALC------------KEGDWVVVDSLAHYTTYVAAERAGLNVAEV 127 (382)
T ss_pred CCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhc------------cCCCEEEEcCcchHHHHHHHHhcCCeEEec
Confidence 34466777789999999999999999999998888666 244566677777766655544333322221
Q ss_pred CCCCCCCCceEeeCCCHHHHHhhc----C--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 219 PFEPVMPGVNFVEYGNIEATRKLI----Q--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~d~~~le~~l----~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
+- ...|.... ++|...+.| + .+.+++.++..+.++-|.+.. -++++++|+++|+.++..-+|+ .
T Consensus 128 p~-tg~Pey~i----~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~ 197 (382)
T COG1103 128 PN-TGYPEYKI----TPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-V 197 (382)
T ss_pred CC-CCCCceEe----cHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-e
Confidence 11 11122222 444444444 3 245777788888888887765 7899999999999999999998 5
Q ss_pred CCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCC-----------CcCCCCChHHHHHHHHHHH
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD-----------HGSTFAGSPLVCNAAIAVL 359 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~-----------~~~t~~~~~~~~~aa~a~L 359 (465)
||.. .....+.+|.++-| |++++.-|+|.+..++++.+..-... .+-|--+.|+.. ..|++
T Consensus 198 Grmp----vs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivT--lmASf 271 (382)
T COG1103 198 GRMP----VSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVT--LMASF 271 (382)
T ss_pred cccc----ccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHH--HHhcC
Confidence 5542 33345678988776 88987679999999998877653221 122222333221 12222
Q ss_pred HHh-cCchHHHHHHHHHHHHHHHHHHHH--HcCCCceeeeccceEEEEEec----------CChHHHHHHHHHCCceEee
Q 012368 360 DKI-SNPAFLASVSKKGHYFKETLKQKL--ARNPHVKDVRGLGLIIGIEFD----------VSATPVVDACRDSGLLVLT 426 (465)
Q Consensus 360 ~~~-~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~i~~~----------~~~~~~~~~l~~~Gv~v~~ 426 (465)
-.. ++-..++.=-+..+++.+.|+++- .+++. .+.. --++.++.+ ...--+.+.|.++||.-..
T Consensus 272 P~V~eRVkrWdeEv~kaR~fv~elEkigg~~qlG~--rPk~-HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~ 348 (382)
T COG1103 272 PHVVERVKRWDEEVEKARWFVAELEKIGGVKQLGE--RPKN-HDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQ 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhCC--CCcc-cceeeecCchHHHHHHhCcCCceeeHHHHHhcCccccc
Confidence 211 111111222234556666666652 12211 1111 112223321 0111256788899987443
Q ss_pred cCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 427 AGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 427 ~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.|.-.++.++ -+..+.|+++..++++++++++.
T Consensus 349 ~G~Tk~~K~s-vyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 349 PGQTKYFKLS-VYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred cCceeEEEEE-eecCCHHHHHHHHHHHHHHHHhc
Confidence 3332567776 45779999999999999988753
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-10 Score=116.88 Aligned_cols=300 Identities=16% Similarity=0.129 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHhhcC-C--------------CeEEecCCHHHHHHHHHHHHHHHhhhcC-----CC-C--------CCC
Q 012368 139 SIPQIELAKRLVACSF-A--------------DRVFFSNTGTEANEAAIKFARKFQRHSN-----PD-S--------KEP 189 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~-~--------------~~v~~~~sG~eA~~~al~~a~~~t~~~~-----~~-~--------~~~ 189 (465)
+..+..+.++|++.++ . ..-.||+|||+||..|+.+||....... .. + ...
T Consensus 128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~ 207 (522)
T TIGR03799 128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY 207 (522)
T ss_pred HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence 3446677777777653 1 2357899999999999999997532100 00 0 001
Q ss_pred CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcC----CC-CeEEEEEcccCCCC
Q 012368 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQ----PG-KTAAVFVEPIQGEG 259 (465)
Q Consensus 190 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~----~~-~~a~vi~ep~~~~~ 259 (465)
.+.+|+.+..-|.+..-+....+... ..+..+|.+ |+++|+++|+ .+ .+.+|+........
T Consensus 208 ~~~~v~~S~~~H~S~~kaa~~lglg~---------~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~t 278 (522)
T TIGR03799 208 DGLAILVSERGHYSLGKAADVLGIGR---------DNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTET 278 (522)
T ss_pred CceEEEECCCchHHHHHHHHHcCCCc---------ccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCC
Confidence 23355555566666543333222110 112223322 7899999885 22 23344443444567
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeC-HHHHhh
Q 012368 260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVT-EKVASA 335 (465)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~ 335 (465)
|.+.| +++|.++|++||+++++|-+|.|.......+-....++ ..|.++++ |.+.+.+.+|+++.+ ++..+.
T Consensus 279 GaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~ 354 (522)
T TIGR03799 279 GNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSA 354 (522)
T ss_pred CCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHH
Confidence 77776 99999999999999999999875411110000012344 57999887 888887889999886 455554
Q ss_pred ccCC--C---Cc------CCCCCh-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccceEE
Q 012368 336 INYG--D---HG------STFAGS-PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLGLII 402 (465)
Q Consensus 336 ~~~~--~---~~------~t~~~~-~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~ 402 (465)
+... . .+ .++.++ +.......++|+.+....+ +.+.+..-.+.+.+.+.+.+.|.+..+. +.-.++
T Consensus 355 ~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~-~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv 433 (522)
T TIGR03799 355 IEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGY-ELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLL 433 (522)
T ss_pred hccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEE
Confidence 4331 0 00 122222 2222245566776655442 3333334444444444444454333222 112233
Q ss_pred EEEe-cC-----------------C------hHHHHHHHHHCCceEeecC---------CC-CEEEEec-CCCCcHHHHH
Q 012368 403 GIEF-DV-----------------S------ATPVVDACRDSGLLVLTAG---------KG-NVVRLVP-PLIISEQELD 447 (465)
Q Consensus 403 ~i~~-~~-----------------~------~~~~~~~l~~~Gv~v~~~~---------~~-~~lRi~~-~~~~t~e~i~ 447 (465)
.+.+ +. . ..++.+.+.+.|..+.... .+ .++|+++ +..+|+++|+
T Consensus 434 ~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~ 513 (522)
T TIGR03799 434 TYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQ 513 (522)
T ss_pred EEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHH
Confidence 3333 10 0 0245556667786654311 11 3589876 5667888888
Q ss_pred HHHHH
Q 012368 448 QAVEI 452 (465)
Q Consensus 448 ~~l~~ 452 (465)
.+++.
T Consensus 514 ~~l~~ 518 (522)
T TIGR03799 514 DILDE 518 (522)
T ss_pred HHHHH
Confidence 87653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=108.92 Aligned_cols=304 Identities=14% Similarity=0.110 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhhcC--CCeEEecCCHH-HHHHHHHHHHHHHhhhc--CCCCCCCCceEEEEcCCcccCccccccccCCC
Q 012368 140 IPQIELAKRLVACSF--ADRVFFSNTGT-EANEAAIKFARKFQRHS--NPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (465)
Q Consensus 140 ~~~~~la~~l~~~~~--~~~v~~~~sG~-eA~~~al~~a~~~t~~~--~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (465)
....++++..++.++ .++|+...+.+ +-+.-++..+..+...- .++...++-+.|.+.|+|-.+.......+
T Consensus 69 ~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~G--- 145 (425)
T PF12897_consen 69 DGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFG--- 145 (425)
T ss_dssp S--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT---
T ss_pred CChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhC---
Confidence 335566777777776 66666654444 33334444444332211 12211346789999999965543322221
Q ss_pred CcCCCCCCCCCCceEeeC----CCHHHHHhhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHH-HHHhCCEEEEecc
Q 012368 215 HYRSPFEPVMPGVNFVEY----GNIEATRKLIQ-PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA-CDDAGALLVFDEV 288 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~----~d~~~le~~l~-~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~~g~llI~DEv 288 (465)
-+...+|. +|++.+|+++. ...++.++|-|..+|+..+.++.+..++|+.+ +...|..++.|.+
T Consensus 146 ----------iemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNA 215 (425)
T PF12897_consen 146 ----------IEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNA 215 (425)
T ss_dssp -----------EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-T
T ss_pred ----------cEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecC
Confidence 12222332 28999999995 56899999999888877788999999999998 4468999999999
Q ss_pred ccCCCCCCc---cc------cccccCCcccE----EEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHH
Q 012368 289 QCGLGRTGY---LW------AHEHYGIFPDI----MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAA 355 (465)
Q Consensus 289 ~~g~gr~g~---~~------~~~~~~~~pdi----~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa 355 (465)
|.=--.++. .- .....| .||. .+.||.--.|-.++++.++++-++.+.......|.+.+-+.|..-
T Consensus 216 Y~vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRH 294 (425)
T PF12897_consen 216 YAVHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRH 294 (425)
T ss_dssp TTT-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHH
T ss_pred ceEeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCceeCccHHHHHHH
Confidence 862101111 00 001112 3443 367897666778999999988877776433345666777888776
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHH-------HHHHHHH-cCCCceee-eccceEEEEEe-cCChHHHHHHHHHCCceEe
Q 012368 356 IAVLDKISNPAFLASVSKKGHYFKE-------TLKQKLA-RNPHVKDV-RGLGLIIGIEF-DVSATPVVDACRDSGLLVL 425 (465)
Q Consensus 356 ~a~L~~~~~~~~~~~~~~~~~~l~~-------~l~~~~~-~~~~~~~~-~~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~ 425 (465)
...+...+ .++.++.++..+.++- .|++.+. ..++.... +.-|.|++++. +..+.++.+.+.+.||.+.
T Consensus 295 vrff~d~~-gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G~AkrvV~lakeAGV~LT 373 (425)
T PF12897_consen 295 VRFFKDAE-GGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDGTAKRVVELAKEAGVALT 373 (425)
T ss_dssp HHHHHSHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-HHHHHHHHHHTTEE--
T ss_pred HHHhcChh-hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCChHHHHHHHHHHhCceeC
Confidence 66666321 1555666555554443 3333344 33333333 33467777877 5678899999999999998
Q ss_pred ecCC---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 426 TAGK---------GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 426 ~~~~---------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.|. ...|||.|++- +.+|++.+++.+.-+++-
T Consensus 374 ~AGAtfPyg~DP~D~nIRiAPS~P-~leel~~Am~~~~~cv~l 415 (425)
T PF12897_consen 374 PAGATFPYGKDPRDSNIRIAPSYP-SLEELETAMDVFATCVKL 415 (425)
T ss_dssp -TTTTSGGG--TTS-EEEE--SSS--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcEEecCCCC-CHHHHHHHHHHHHHHHHH
Confidence 8641 46799998866 788999999988776653
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-10 Score=108.03 Aligned_cols=291 Identities=13% Similarity=0.090 Sum_probs=170.9
Q ss_pred HHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcC
Q 012368 142 QIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR 217 (465)
Q Consensus 142 ~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 217 (465)
+..+|+.|.++-| ++.|++|.|.+.|+...++++..- +++.|+++-|-|+-++......++...
T Consensus 119 R~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~----------~~~GvliPiPQYPLYsAti~l~~~~~v-- 186 (475)
T KOG0258|consen 119 RKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG----------KKTGVLIPIPQYPLYSATISLLGGTQV-- 186 (475)
T ss_pred HHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC----------CCCceEeecCCCchhHHHHHHhCCccc--
Confidence 7778888877765 779999999999999999988742 578899999999877654433333221
Q ss_pred CCCCCCCCCceEeeCCCHHHHHhhcC----C-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-
Q 012368 218 SPFEPVMPGVNFVEYGNIEATRKLIQ----P-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG- 291 (465)
Q Consensus 218 ~~~~~~~~~~~~~~~~d~~~le~~l~----~-~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g- 291 (465)
++.-.....+- -|.++|++.++ . +..++|+++|-|++|- +.+++-+++|..+|.+++++|+.||||..
T Consensus 187 -~YyLdEe~~W~---ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGq--vls~e~ie~i~~fa~~~~l~llaDEVYQ~N 260 (475)
T KOG0258|consen 187 -PYYLDEESNWS---LDVAELERSVDEARKGINPRALVVINPGNPTGQ--VLSEENIEGIICFAAEEGLVLLADEVYQDN 260 (475)
T ss_pred -ceeeccccCCC---CCHHHHHHHHHHHhccCCceEEEEECCCCccch--hhcHHHHHHHHHHHHHcCeEEechHHHHhh
Confidence 11100111111 26777777765 1 2467899999998874 45899999999999999999999999876
Q ss_pred CCCCC-ccccccc----cC-Cccc---EE---EecccCCC--ccceeeEEe---CHHHHhhccCCCCcCCCCChHHHHHH
Q 012368 292 LGRTG-YLWAHEH----YG-IFPD---IM---TLAKPLAG--GLPIGAALV---TEKVASAINYGDHGSTFAGSPLVCNA 354 (465)
Q Consensus 292 ~gr~g-~~~~~~~----~~-~~pd---i~---t~sK~lg~--G~~iG~v~~---~~~i~~~~~~~~~~~t~~~~~~~~~a 354 (465)
....+ ++.++.. .+ -.+| +. +.||++.| |.|.|++=. .+++.+.+.... ....+.+..+++.
T Consensus 261 vy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~-si~lc~~V~GQ~~ 339 (475)
T KOG0258|consen 261 VYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLA-SIKLCPQVSGQKL 339 (475)
T ss_pred ccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHH-hhhhcCCccchhh
Confidence 32333 2322211 11 2232 22 45799876 899999842 344444332110 0001111111111
Q ss_pred HHH----------HHHH--hcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe---c------------
Q 012368 355 AIA----------VLDK--ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF---D------------ 407 (465)
Q Consensus 355 a~a----------~L~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~---~------------ 407 (465)
.-. ..+. -+.+...+.++++...+.+.+++ .+.+..-+..|.|+.+.- +
T Consensus 340 vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns----~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~ 415 (475)
T KOG0258|consen 340 VDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNS----LEGISCNPVQGAMYLFPQISLPPKAIEAAKALGI 415 (475)
T ss_pred hceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhh----cCceeeccCccceeecccccCCHHHHHHHHHhCC
Confidence 110 0111 12345566666666666555544 356667778898887643 2
Q ss_pred CChHHHHHHHHH-CCceEeecCC----CC--EEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 408 VSATPVVDACRD-SGLLVLTAGK----GN--VVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 408 ~~~~~~~~~l~~-~Gv~v~~~~~----~~--~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+..-.+..|++ -||-+.|+.. ++ .+|.++- ... + +.+++++++-.++
T Consensus 416 ~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiL---p~~-~-~~i~~~~~fH~~f 470 (475)
T KOG0258|consen 416 APDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTIL---PPG-L-EIIEKFKKFHAEF 470 (475)
T ss_pred CCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeec---Cch-h-HHHHHHHHHHHHH
Confidence 111224556665 6999988731 22 3665432 122 3 5566665554443
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-10 Score=107.90 Aligned_cols=275 Identities=15% Similarity=0.136 Sum_probs=152.7
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHH
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 237 (465)
-+-|.|||-|+..+.+....+. ++..|.+.+|+|..+.......+-.....+.| ......+ |.+.
T Consensus 97 t~Qt~GGTGAL~~~A~fl~~~~---------~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yy---d~~~~~~---df~~ 161 (396)
T COG1448 97 TVQTLGGTGALRVAADFLARFF---------PDATVWISDPTWPNHKAIFEAAGLEVETYPYY---DAETKGL---DFDG 161 (396)
T ss_pred heecCCcchHHHHHHHHHHHhC---------CCceEEeCCCCcHhHHHHHHhcCCceeeeecc---ccccccc---cHHH
Confidence 3568899999999888776654 46779999999976654444333222111111 1111112 4455
Q ss_pred HHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--ccccccc-CCcc-cEE
Q 012368 238 TRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHY-GIFP-DIM 311 (465)
Q Consensus 238 le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~~~-~~~p-di~ 311 (465)
+-..|+ +.. .+|++-+--+|++.+-++.+.+++|.++.++.+.+-++|=+|-||+.... .++...+ ...+ -++
T Consensus 162 mla~L~~a~~~-~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lv 240 (396)
T COG1448 162 MLADLKTAPEG-SVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLV 240 (396)
T ss_pred HHHHHHhCCCC-CEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEE
Confidence 444443 222 24444443333323567999999999999999999999999999963211 1111111 1122 233
Q ss_pred --EecccCCC-ccceeeEEe---CHHHHhhccC---CCCcCCCCChHHHHHH-HHHHHHH--h------cCchHHHHHHH
Q 012368 312 --TLAKPLAG-GLPIGAALV---TEKVASAINY---GDHGSTFAGSPLVCNA-AIAVLDK--I------SNPAFLASVSK 373 (465)
Q Consensus 312 --t~sK~lg~-G~~iG~v~~---~~~i~~~~~~---~~~~~t~~~~~~~~~a-a~a~L~~--~------~~~~~~~~~~~ 373 (465)
+|||.||- |-|+|++.. +++..+.+.. ....++|+.+|---++ ....|+. + +-+++.+++.+
T Consensus 241 a~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~ 320 (396)
T COG1448 241 ASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILE 320 (396)
T ss_pred EehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 58899996 889998753 3444444321 1233556544432222 2222321 0 01234455555
Q ss_pred HHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 374 KGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 374 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
++..|.+.|++.......-.-....|+|...- ...+++.+..-+.||++...| ||+++ ..++..++.+++.|
T Consensus 321 mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~G--ls~~QV~rLree~~IY~v~sG-----Ri~va-Gl~~~ni~~va~ai 392 (396)
T COG1448 321 MRQALVDALKALGAPRNFDFIISQRGMFSYTG--LSPEQVDRLREEFGIYLVASG-----RINVA-GLNTSNIDYVAKAI 392 (396)
T ss_pred HHHHHHHHHHhhCCCcccchHhhcCceeecCC--CCHHHHHHHHHhccEEEecCC-----eeeec-cCChhhHHHHHHHH
Confidence 55555555554322211111223445543332 234444444446799998665 77765 55888899999988
Q ss_pred HHH
Q 012368 454 CKT 456 (465)
Q Consensus 454 ~~~ 456 (465)
.++
T Consensus 393 ~~v 395 (396)
T COG1448 393 AAV 395 (396)
T ss_pred Hhh
Confidence 765
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-09 Score=109.24 Aligned_cols=269 Identities=15% Similarity=0.136 Sum_probs=153.9
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc-cCCCCcCCCCCCCCCCceEeeC----
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMPGVNFVEY---- 232 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---- 232 (465)
|... ||+.||..++.... .|+|+|+..+..+-|+....... .+...- .....+..+||
T Consensus 218 VQp~-SGs~AN~aV~~ALl-----------~PGD~IL~ldl~~GGHlshg~~~~~g~~vs-----~sG~~~~~vpY~~d~ 280 (586)
T PLN02271 218 VQPY-SCTSANFAVYTGLL-----------LPGDRIMGLDSPSGGHMSHGYYTPGGKKVS-----GASIFFESLPYKVNP 280 (586)
T ss_pred eeec-cHHHHHHHHHHHhc-----------CCCCEEEEecCCCCCchhcccccccccccc-----cccceEEEEEccccc
Confidence 4443 89999999987665 27999999998776665433211 000000 00001122221
Q ss_pred ----CCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcc
Q 012368 233 ----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308 (465)
Q Consensus 233 ----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~p 308 (465)
-|.+++++.....++++|++...... ...+ +++++++|+++|++|++|-+|. .|-.........+. ..
T Consensus 281 ~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP~~-~a 352 (586)
T PLN02271 281 QTGYIDYDKLEEKALDFRPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNPFD-YC 352 (586)
T ss_pred ccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCCCc-CC
Confidence 17899998655557888888664322 1223 8899999999999999999987 33222111001111 36
Q ss_pred cEEEec--ccCCCccceeeEEeCHH--------------------HHhhccC----CCCcCCCCChHHHHHHHHHHHHHh
Q 012368 309 DIMTLA--KPLAGGLPIGAALVTEK--------------------VASAINY----GDHGSTFAGSPLVCNAAIAVLDKI 362 (465)
Q Consensus 309 di~t~s--K~lg~G~~iG~v~~~~~--------------------i~~~~~~----~~~~~t~~~~~~~~~aa~a~L~~~ 362 (465)
|++|.+ |+|.|. +.|.++.+++ +.+.+.. +.++++.+. .+++...+++..
T Consensus 353 Dvvt~TTHKtLrGP-rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~---~IAalAvalkea 428 (586)
T PLN02271 353 DIVTSTTHKSLRGP-RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNN---HIAALAIALKQV 428 (586)
T ss_pred cEEEeCCcccCCCC-CceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHH---HHHHHHHHHHHH
Confidence 888765 999763 2377776653 3333322 222222221 233434445544
Q ss_pred cCc---hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHHHHHHHHHCCceEee----cC----
Q 012368 363 SNP---AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLT----AG---- 428 (465)
Q Consensus 363 ~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~----~~---- 428 (465)
..+ ++.+++.++.+.|.+.|.+. .+.++..- ....++++++. .......+.|.+.||.+.. +.
T Consensus 429 ~~~efk~Ya~QVv~NAkaLA~~L~~~--G~~vv~gg-TdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~ 505 (586)
T PLN02271 429 ATPEYKAYMQQVKKNAQALASALLRR--KCRLVTGG-TDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTI 505 (586)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHC--CCeEeeCC-CCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCC
Confidence 443 46667777777777777653 33332211 12345566662 2455566666677888742 21
Q ss_pred CCCEEEEecC----CCCcHHHHHHHHHHHHHHHH
Q 012368 429 KGNVVRLVPP----LIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 429 ~~~~lRi~~~----~~~t~e~i~~~l~~l~~~l~ 458 (465)
....+||-.+ ....++|++++.+.|.+++.
T Consensus 506 ~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 506 SPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 1244888554 33567889998888888876
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-09 Score=105.19 Aligned_cols=335 Identities=14% Similarity=0.113 Sum_probs=187.6
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
..|||+.+..++ +-..++..+|+.. +.- .+..++...+|.+.+++.+|.+.++++.+|..|..++++....
T Consensus 41 dV~IDLrSDTgT---~apS~~m~aAM~~----GDD--~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~ 111 (467)
T TIGR02617 41 DVFIDLLTDSGT---GAVTQSMQAAMMR----GDE--AYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_pred CeEEECccCCCC---CCCCHHHHHHHHc----CCc--ccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcc
Confidence 357999997664 2245777777764 111 2234555789999999999999999999999999998886652
Q ss_pred HhhhcCCCCCCCCceEEE------EcCCcccCcc-ccccccCCCCcCCC-CCCCCCCceEeeC---CCHHHHHhhcCC--
Q 012368 178 FQRHSNPDSKEPATEFVS------FTNSFHGRTM-GALALTSKEHYRSP-FEPVMPGVNFVEY---GNIEATRKLIQP-- 244 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~------~~~~yhg~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~d~~~le~~l~~-- 244 (465)
++++.+++ ....||-.+. +...+++....... ........ ..++ -|+++|+++|++
T Consensus 112 ----------~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~-~~~fkG~~dl~~le~~I~~~g 180 (467)
T TIGR02617 112 ----------KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGV-RYDFKGNFDLEGLERGIEEVG 180 (467)
T ss_pred ----------cccccccccccccccceEEEEecchHHHHHcCceeecccchhhccccc-CCCCCCCcCHHHHHHHHhhcC
Confidence 02333331 1122222221 12222221110000 00000000 0111 289999999983
Q ss_pred -CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc----CC------CCCCccc---cccccCCcccE
Q 012368 245 -GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC----GL------GRTGYLW---AHEHYGIFPDI 310 (465)
Q Consensus 245 -~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~----g~------gr~g~~~---~~~~~~~~pdi 310 (465)
+++..+.+.-.++..|..+.+.+.+++++++|++||+.++.|-+-- -| +..+... +.+.+. ..|.
T Consensus 181 ~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~-~aDs 259 (467)
T TIGR02617 181 PNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK-YADM 259 (467)
T ss_pred CCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc-cCCE
Confidence 3455555555555556667899999999999999999999997521 01 1222210 001111 2466
Q ss_pred E--EecccCCCccceeeE-EeCHH----HHhhccC----CCCcCCCCC-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012368 311 M--TLAKPLAGGLPIGAA-LVTEK----VASAINY----GDHGSTFAG-SPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 311 ~--t~sK~lg~G~~iG~v-~~~~~----i~~~~~~----~~~~~t~~~-~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
+ |+||.++. |+|.+ +++++ +.+..+. .....||++ +.-.+.|....|+..-+++++.+-.+..++|
T Consensus 260 vt~slsKglgA--pvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl 337 (467)
T TIGR02617 260 LAMSAKKDAMV--PMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYL 337 (467)
T ss_pred EEEEcCCCCCC--cccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHH
Confidence 5 45677654 66544 45543 3333322 123456654 2334444444566554566666666666777
Q ss_pred HHHHHHHHHcCCCceeeeccceEEEEEe----c------CChHHHHHHHH-HCCceEeec-----------CC-----CC
Q 012368 379 KETLKQKLARNPHVKDVRGLGLIIGIEF----D------VSATPVVDACR-DSGLLVLTA-----------GK-----GN 431 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~----~------~~~~~~~~~l~-~~Gv~v~~~-----------~~-----~~ 431 (465)
.+.|.+. ..|++. +. |.-+.++. + -++..++-+|. +-||-..-. +. -.
T Consensus 338 ~~~L~~~--Gvpi~~-~G--ghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~e 412 (467)
T TIGR02617 338 VNGLEEI--GVVCQQ-AG--GHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAE 412 (467)
T ss_pred HHHHHhC--CCcEEe-cC--ccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccc
Confidence 7777664 444433 32 33333332 1 24566777765 445542211 00 14
Q ss_pred EEEEecC-CCCcHHHHHHHHHHHHHHHHHh
Q 012368 432 VVRLVPP-LIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 432 ~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+|+.+| -+-|.+++|..++++..+.++-
T Consensus 413 l~RlaipRrvyt~~h~d~v~~~~~~~~~~~ 442 (467)
T TIGR02617 413 LLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_pred eeeeccccccccHhHHHHHHHHHHHHHhhh
Confidence 5898876 3458999999999998877653
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=117.00 Aligned_cols=197 Identities=17% Similarity=0.146 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii 194 (465)
.+|++.+++.+.... .. .+..++...++++++++.+|.+.++|++||+.||.++++.... +.+.||
T Consensus 7 ~~~~m~~a~~~a~~g--d~-~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~-----------~~~~vi 72 (290)
T PF01212_consen 7 PTPAMLEAMAAANVG--DD-AYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLR-----------PGESVI 72 (290)
T ss_dssp S-HHEEHHHHHTTSB---C-CTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHH-----------TTEEEE
T ss_pred CCHHHHHHHHccccC--Cc-ccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHh-----------cCCcee
Confidence 579999999554322 11 3455677899999999999999999999999999999997773 566777
Q ss_pred EEcCCccc--Cccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCH
Q 012368 195 SFTNSFHG--RTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 195 ~~~~~yhg--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
..++ .|- +..++. .+++..... .+...... -|+++|++.+.. .++++|.+|......|..+++.
T Consensus 73 ~~~~-aHi~~~E~ga~~~~~G~~~~~---l~~~~~G~----l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~ 144 (290)
T PF01212_consen 73 CADT-AHIHFDETGAIEELSGAKLIP---LPSDDDGK----LTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSL 144 (290)
T ss_dssp EETT-EHHHHSSTTHHHHHTTCEEEE---EBECTGTB----B-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---H
T ss_pred cccc-ceeeeeccchhhHhcCcEEEE---CCCcccCC----CCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCH
Confidence 7665 333 222222 122211100 00001011 178999999873 3578888887766655567899
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccC--CCCCCccccccccCCcccEEEecccCCCccceeeE-EeCHHHHhh
Q 012368 267 EFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAA-LVTEKVASA 335 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g--~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v-~~~~~i~~~ 335 (465)
++|++|.++|++||+.|+.|-+--. ....|. ......-..|++++|=+-++|.+.|.+ ++++++++.
T Consensus 145 ~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~--~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 145 EELRAISELAREHGLPLHMDGARLANAAAALGV--SLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIAK 214 (290)
T ss_dssp HHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHH--HHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHHH
T ss_pred HHHHHHHHHHHhCceEEEEehhhHHHhhhcccc--cHHHHhhhCCEEEEEEEcccccccceEEEechHHHHH
Confidence 9999999999999999999975210 000111 111112346888776444445566555 568885543
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-09 Score=113.45 Aligned_cols=305 Identities=11% Similarity=0.061 Sum_probs=173.6
Q ss_pred cCCC-CCHHHHHHHHHHHhhcccccCCCCCHH-------HHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhh
Q 012368 111 ALGH-GDADWIKAVVDQANVLTHVSNMYYSIP-------QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 111 ~lGh-~~p~v~~a~~~~~~~~~~~~~~~~~~~-------~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.++| -|+.|.+++.+..+.++.+ ++|..+. ..++...++++.| .+.+-++.++|.+.+.++...+ .+.
T Consensus 112 ~y~~~~P~~v~~~i~~~~~~~Tay-tPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~-~~~ 189 (993)
T PLN02414 112 YYNTHVPPVILRNILENPGWYTQY-TPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNN-ILK 189 (993)
T ss_pred CCCccCCHHHHHHHHhChHHHhhc-CCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHh-ccc
Confidence 4555 5566668888766543332 3343221 3456666778887 5689999999999987665443 221
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCC
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G 260 (465)
.++++|++.+..|+.......... ....-.+..+|..+.+ .. .+.+++++ ..+++..|
T Consensus 190 -------g~~~~VlVs~~~hP~~~~v~~t~a---------~~~GieV~~v~~~~~~----~~-~~~v~~vl-vq~P~~~G 247 (993)
T PLN02414 190 -------GKKKKFLIASNCHPQTIDVCQTRA---------DGLGLEVVVADEKDFD----YS-SGDVCGVL-VQYPATDG 247 (993)
T ss_pred -------CCCCEEEEcCccCHhHHHHHHHhh---------hhcCCEEEEecchhhc----cc-cCceEEEE-EecCCCCe
Confidence 035678888777755443221111 1111233444432211 11 22455554 44555677
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccC---C-CccceeeEEeCHHHHh
Q 012368 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPL---A-GGLPIGAALVTEKVAS 334 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l---g-~G~~iG~v~~~~~i~~ 334 (465)
.+.+ +++|.++|+++|+++++ -++. ++-.+. -... .+..|+++.+ |.. | ||-..|++.+++++..
T Consensus 248 ~v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~l-~~pg--e~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r 318 (993)
T PLN02414 248 EVLD----YAEFVKNAHANGVKVVM-ATDL-LALTML-KPPG--EWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR 318 (993)
T ss_pred EEcC----HHHHHHHHHHcCCEEEE-EECH-HHhcCC-CCHh--hccCcEEEECCCccccCCCCCCCCeeEEEECHHHHh
Confidence 7766 99999999999999999 3322 211110 0111 2346887653 443 2 4555899999998766
Q ss_pred hccCCC-------Cc-C----------------CCCChHH---HHHHHHHHH--HHhcC---chHHHHHHHHHHHHHHHH
Q 012368 335 AINYGD-------HG-S----------------TFAGSPL---VCNAAIAVL--DKISN---PAFLASVSKKGHYFKETL 382 (465)
Q Consensus 335 ~~~~~~-------~~-~----------------t~~~~~~---~~~aa~a~L--~~~~~---~~~~~~~~~~~~~l~~~l 382 (465)
.+-... .+ . ....|.- +..|++++. ..+.. ++..+++.++..+++++|
T Consensus 319 ~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L 398 (993)
T PLN02414 319 LMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGL 398 (993)
T ss_pred hCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 442110 00 0 0012322 222333222 22222 344566677777777777
Q ss_pred HHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 383 KQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 383 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
.+. .+..... .....+.+.++ ...++.++|.++||.+..... +.+|+++....|++||+.+++.|.
T Consensus 399 ~~~--G~~~~~~--~~f~~vt~~~~-~~~~v~~~L~~~gI~l~~~~~-~~lrvs~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 399 KKL--GFQVQSL--PFFDTVKVKCS-DADAIADAAAKVGINLRVVDA-NTVTVSFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred hhc--CCccCCC--CCcCeEEEecC-CHHHHHHHHHHCCCeeEEecC-CeEEEEeeccCCHHHHHHHHHHHc
Confidence 542 2222111 11113334443 457899999999998876543 679999999999999999999996
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-08 Score=98.18 Aligned_cols=291 Identities=19% Similarity=0.206 Sum_probs=182.8
Q ss_pred HHHHHHHHHhhcCCCeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 142 QIELAKRLVACSFADRVFFS-NTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 142 ~~~la~~l~~~~~~~~v~~~-~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
..+|.++|++..|.|.|-+. ++|++.=..-+.++++|...+++. .|+.+|+. .+-||.......+.|-..
T Consensus 111 i~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~---~R~~~LIP-~SAHGTNPASAam~G~~V----- 181 (496)
T COG1003 111 IYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEG---HRNICLIP-DSAHGTNPASAAMAGFKV----- 181 (496)
T ss_pred HHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCC---cCcEEEee-ccccCCChhhHhhcCceE-----
Confidence 55788999999998877655 779998888899999998776654 25555555 467888766655544222
Q ss_pred CCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc----ccC
Q 012368 221 EPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV----QCG 291 (465)
Q Consensus 221 ~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv----~~g 291 (465)
+.++.+ |+++|++++.+ +++++++. ++++-|+. ++-+.+|+++.+++|..|..|-+ +-|
T Consensus 182 -------V~V~~~~~G~VDlddLk~k~~~-~~AalMiT-nPsT~GvF---E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG 249 (496)
T COG1003 182 -------VVVKCDENGNVDLDDLRAKAED-NLAALMIT-NPSTLGVF---EEDIREICEIVHEAGGQVYYDGANLNAIVG 249 (496)
T ss_pred -------EEEecCCCCCccHHHHHHHhcc-ceeEEEec-cCcccccc---hhhHHHHHHHHHHcCCEEEecCcchhhhhc
Confidence 222222 89999999974 56555443 23444554 34589999999999999999986 334
Q ss_pred CCCCCccccccccCCcccEE------EecccCCC-ccceeeEEeCHHHHhhccC----CC---------------CcCCC
Q 012368 292 LGRTGYLWAHEHYGIFPDIM------TLAKPLAG-GLPIGAALVTEKVASAINY----GD---------------HGSTF 345 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~------t~sK~lg~-G~~iG~v~~~~~i~~~~~~----~~---------------~~~t~ 345 (465)
..|.|.+ ..|++ ||+-.-|| |-..|-|.+++++...+-. .. ....+
T Consensus 250 ~~rPGd~--------G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~ 321 (496)
T COG1003 250 LARPGDM--------GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAP 321 (496)
T ss_pred ccccccc--------ccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccc
Confidence 4444432 23444 44444454 4667777777777665532 00 01223
Q ss_pred CChHHHHHHHHHHHHHhcCchHH---HHHHHHHHHHHHHHHHHHHcCCCceeeec-cceEEEEEe-------cCChHHHH
Q 012368 346 AGSPLVCNAAIAVLDKISNPAFL---ASVSKKGHYFKETLKQKLARNPHVKDVRG-LGLIIGIEF-------DVSATPVV 414 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~i~~-------~~~~~~~~ 414 (465)
.+|......+.+.+..+..+.+. +...-+..++.++|+. .+++...... .--=+.++. .....+++
T Consensus 322 ~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~---~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvA 398 (496)
T COG1003 322 YGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG---YYPVPYTGENRVAHECILDARPLKKETGVRALDVA 398 (496)
T ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh---cCccccCCCCcceeEEEeechHhHhhcCCcHHHHH
Confidence 34555555666666666544432 2233355666666654 3332211110 000011221 14567899
Q ss_pred HHHHHCCceEeecCC----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhcC
Q 012368 415 DACRDSGLLVLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 464 (465)
Q Consensus 415 ~~l~~~Gv~v~~~~~----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~ 464 (465)
++|++.|+....... .+.+.|-|.-.-+++++|++++++.++.++.++.+
T Consensus 399 KrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 399 KRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred HHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999987643321 25688888777899999999999999988876653
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-09 Score=105.73 Aligned_cols=295 Identities=16% Similarity=0.081 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHhhcCC-C--eEEecCCHHHHHHHHHHHHHHHhhhcCCC--CC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFA-D--RVFFSNTGTEANEAAIKFARKFQRHSNPD--SK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~-~--~v~~~~sG~eA~~~al~~a~~~t~~~~~~--~~ 187 (465)
.++...+++...+.+.......++ ....+++..++++.++. + .-.||+||||||.+|+.+++......... ..
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~ 153 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK 153 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 456667777777665322222232 23366777778887762 3 46899999999999999998766311100 00
Q ss_pred CCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEE-EEEcccCCCCCcccCC
Q 012368 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAA-VFVEPIQGEGGIYSAT 265 (465)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~-vi~ep~~~~~G~~~~~ 265 (465)
..+...|+.....|-+..-+..+-+-.... .+..+ ... -|+++|+++++..++.. |+..--....|.+-+
T Consensus 154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~---v~~~~~~~~----id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDd- 225 (460)
T COG0076 154 PGGKPNIVCSETAHFSFEKAARYLGLGLRR---VPTVPTDYR----IDVDALEEAIDENTIGGVVVGTAGTTDTGSIDD- 225 (460)
T ss_pred cCCCCeEEecCcchhHHHHHHHHhCCCcee---EEeccCccc----cCHHHHHHHHHhhccCceEEEEecCCCCCccCC-
Confidence 011225666667776665554433322111 11112 111 28999999998654442 444333444455544
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCCC-Ccccccc-ccCC-cccEEEec--ccCCCccceeeEEeCHH--HHhhcc-
Q 012368 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRT-GYLWAHE-HYGI-FPDIMTLA--KPLAGGLPIGAALVTEK--VASAIN- 337 (465)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~gr~-g~~~~~~-~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~~--i~~~~~- 337 (465)
+++|.++|+++++++++|-++.||-.. -.. ... .+++ ..|.++++ |.....+++|+++.+++ +.+.+.
T Consensus 226 ---i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~-~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~ 301 (460)
T COG0076 226 ---IEELADIAEEYGIWLHVDAAFGGFLLPFLEP-DGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIF 301 (460)
T ss_pred ---HHHHHHHHHHcCCcEEEEccccceeecccCc-cchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhc
Confidence 999999999999999999999886321 100 011 1233 35677766 77666789999998754 433332
Q ss_pred -CCCCc------CCCCCh--HHHHHHHHHHHHHhcCchHHH---HHHHHHHHHHHHHHHHHHcCCCcee-eeccceEEEE
Q 012368 338 -YGDHG------STFAGS--PLVCNAAIAVLDKISNPAFLA---SVSKKGHYFKETLKQKLARNPHVKD-VRGLGLIIGI 404 (465)
Q Consensus 338 -~~~~~------~t~~~~--~~~~~aa~a~L~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~i 404 (465)
..... .|..++ .-..++..+.+..+..+++.+ +..++.+++.+.|++. +.+.. ..+..+.+.+
T Consensus 302 ~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~----~~~e~~~~p~l~~V~f 377 (460)
T COG0076 302 ADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL----GDFELVNEPELPIVAF 377 (460)
T ss_pred ccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC----CCcEeecCCccceEEE
Confidence 11111 111122 224455667777776555433 3335555665555543 42222 2244555666
Q ss_pred EecCC---hHHHHHHHHHCCceEe
Q 012368 405 EFDVS---ATPVVDACRDSGLLVL 425 (465)
Q Consensus 405 ~~~~~---~~~~~~~l~~~Gv~v~ 425 (465)
.++.. ..+...++.+.|..+.
T Consensus 378 r~~~~~~~~~~~~~~~~~~gw~v~ 401 (460)
T COG0076 378 RLKDDEDTLADLSERLDRRGWQVP 401 (460)
T ss_pred EcCCcccchhchHHHHHhcCceee
Confidence 65221 3344555555666554
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-09 Score=102.82 Aligned_cols=273 Identities=14% Similarity=0.093 Sum_probs=157.1
Q ss_pred HHHHHHHHHhhcC-C-C--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccc---cccccCCC
Q 012368 142 QIELAKRLVACSF-A-D--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMG---ALALTSKE 214 (465)
Q Consensus 142 ~~~la~~l~~~~~-~-~--~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~---~~~~~~~~ 214 (465)
..+..+.|.+.++ . + -++++.||+.++++++..+.. ++++++++. + +.|.-.. +...+...
T Consensus 41 ~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~----------~~g~~vLv~-g-~FG~r~~~eia~~~g~~~ 108 (374)
T TIGR01365 41 LAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG----------CRGVDVLAW-E-SFGKGWVTDVTKQLKLPD 108 (374)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC----------CCCCeEEEE-C-HHHHHHHHHHHHhcCCCC
Confidence 5566777777776 2 2 367799999999999986541 136677764 3 3344322 11111100
Q ss_pred CcCCCCCCCCCCceEeeCC---CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEecccc
Q 012368 215 HYRSPFEPVMPGVNFVEYG---NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AGALLVFDEVQC 290 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~~ 290 (465)
. .+...+++ |+++++. + .. |.+..+-.++|+..+ ++++. ++ +++++|+|-|-+
T Consensus 109 v----------~~l~~~~g~~~~~~~ve~--~-~~---v~~vhnETSTGv~np----v~~i~---~~~~~~lliVDavSs 165 (374)
T TIGR01365 109 V----------RVLEAEYGKLPDLKKVDF--K-ND---VVFTWNGTTSGVRVP----NGDFI---PADREGLTICDATSA 165 (374)
T ss_pred c----------EEEcCCCCCCCCHHHcCC--C-CC---EEEecCCCchheecc----ccccc---cccCCCcEEEEccch
Confidence 0 01112222 6777762 1 12 334444455676665 44433 33 589999998865
Q ss_pred CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCC----------------------CCcCCCC
Q 012368 291 GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG----------------------DHGSTFA 346 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~----------------------~~~~t~~ 346 (465)
+| +..+..+ + .|++..| |+|++.-.+++++.+++.++..... ....|.+
T Consensus 166 -~g--~~~l~~d--~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~ 238 (374)
T TIGR01365 166 -AF--AQDLDYH--K--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTIN 238 (374)
T ss_pred -hc--CCCCChh--H--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCC
Confidence 53 3333333 2 6777655 9998744567888888877654310 0122333
Q ss_pred -ChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHcCCCce---eeeccceEEEEEe-cC-------C-
Q 012368 347 -GSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLARNPHVK---DVRGLGLIIGIEF-DV-------S- 409 (465)
Q Consensus 347 -~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~~g~~~~i~~-~~-------~- 409 (465)
.+.....++..+|+.+.++ +..++.+++.+.+++.++++- .+.... ..++ .....+.+ +. +
T Consensus 239 TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg-~l~~~~~~~~~rS-~tvt~v~~~~~~~~~~~~~~ 316 (374)
T TIGR01365 239 TPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNN-WIHFLAETPEIRS-NTSVCLKVVDPAIDALDEDA 316 (374)
T ss_pred ChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCChhhcC-CCeEEEEeCCccccccccch
Confidence 3444556666777655443 344455555555555555531 011111 1222 22334444 21 2
Q ss_pred ----hHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 410 ----ATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 410 ----~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
..++.+.|.++||.+.++.. +..+||...-.++.+|++.+++.|+-+.+
T Consensus 317 ~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 317 QADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred hhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence 57789999999999886642 57899988778999999999999986654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-08 Score=101.12 Aligned_cols=310 Identities=9% Similarity=0.010 Sum_probs=179.2
Q ss_pred CCHHHHHHHHHHHhhccc-------ccCCC--CCHHHHHHHHHHHhhcC-CC--e-EEecCCHHHHHHHHHHHHHHHhhh
Q 012368 115 GDADWIKAVVDQANVLTH-------VSNMY--YSIPQIELAKRLVACSF-AD--R-VFFSNTGTEANEAAIKFARKFQRH 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~-------~~~~~--~~~~~~~la~~l~~~~~-~~--~-v~~~~sG~eA~~~al~~a~~~t~~ 181 (465)
-+++|++++.+.+..+.. .+.+. ......+..+.|.+.++ ++ + +++..||+.++++++.-+..
T Consensus 18 lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~---- 93 (365)
T PLN02452 18 LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCK---- 93 (365)
T ss_pred CCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCC----
Confidence 468899998887543211 01111 11235667777777776 32 3 45558899999988875542
Q ss_pred cCCCCCCCCceEEEEcCCcccCcccccc--ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCC
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG 259 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~ 259 (465)
+++++++...++.|.-..-.. .+...... .. ....+....++++++ .+.+...|.+..+....
T Consensus 94 -------~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~---~~--~~~~~~~~~~~~~~~---~~~~~~~v~~~hnETst 158 (365)
T PLN02452 94 -------PGDKADFVVTGSWSKKAAKEAKKYCKTNVIA---SG--KDEKYTKIPSVSEWE---LTPDAKFVHICANETIH 158 (365)
T ss_pred -------CCCeEEEEECCHHHHHHHHHHHHhCCCcEEE---ec--CCCCCCCCCChHHcC---CCCCCcEEEECCCCCCC
Confidence 467777777766665432221 11100000 00 000000012444432 13356777777777777
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC
Q 012368 260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG 339 (465)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~ 339 (465)
|+...+ ++++. ++++|+|-+++ +| +.....+.+++ |..+--|.+| .-.+|.+++++++++.+.+.
T Consensus 159 Gv~~~~---~~~i~------~~~lvVDa~Ss-~g--~~pidv~~~~v--~~~saqK~lG-P~Gl~~v~vr~~~l~~~~~~ 223 (365)
T PLN02452 159 GVEFKD---YPDVG------NVPLVADMSSN-FL--SKPVDVSKYGV--IYAGAQKNVG-PSGVTIVIIRKDLIGNARPI 223 (365)
T ss_pred cEecCc---ccccC------CCeEEEECCcc-cc--CcccCHHHcCE--EEEecccccC-CCCeEEEEEcHHHHhhcccC
Confidence 874222 33332 38999999987 42 33334455554 5556669996 23478999999998765432
Q ss_pred -----------CCcCCC-CChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccceEE
Q 012368 340 -----------DHGSTF-AGSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLGLII 402 (465)
Q Consensus 340 -----------~~~~t~-~~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~ 402 (465)
....++ +.+...+.+..++|+.+.++ ...++.+++.+++++.|++...-+....... .....+
T Consensus 224 ~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~v 303 (365)
T PLN02452 224 TPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNV 303 (365)
T ss_pred CCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEE
Confidence 122333 34556677777888887553 3444555555555555554210001111101 123344
Q ss_pred EEEec--CChHHHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 403 GIEFD--VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 403 ~i~~~--~~~~~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+.++ ....+|.+.+.++|+...++.. ++ +|++.=-.++.++++.+++.++++-++
T Consensus 304 sF~~~~~~~~~~f~~~~~~~g~~~~~G~r~~gg-~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 304 PFTLGGSELEAEFVKEAAKAGMVQLKGHRSVGG-MRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred EEEcCCchhHHHHHHHHHHCCCcccCCccccCc-eEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 45542 2467899999999999987753 44 999887788999999999998887653
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-08 Score=109.12 Aligned_cols=274 Identities=15% Similarity=0.078 Sum_probs=158.5
Q ss_pred HHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 143 IELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 143 ~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
.++...++++.| ..++-+..+++.+.+.++...+ +.+ .++++|++.+..|+..........
T Consensus 124 ~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~-~~~-------~~~~~vlv~~~~hP~~~~v~~t~a--------- 186 (954)
T PRK05367 124 LNFQTMVADLTGLEIANASLLDEATAAAEAMALAKR-VSK-------SKSNRFFVDDDVHPQTLDVLRTRA--------- 186 (954)
T ss_pred HHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhh-hcc-------CCCCEEEEcCccCHHHHHHHHHHH---------
Confidence 345566778888 4578899999999886665433 321 013788888877754432211110
Q ss_pred CCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc
Q 012368 221 EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300 (465)
Q Consensus 221 ~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~ 300 (465)
.+..-.+..++..+ + ++.++++++ +..+++..|.+.+ +++|.++|+++|+++++|-.+..++.. . .
T Consensus 187 ~~~G~ev~~~~~~~--d----~~~~~~~~v-lvq~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l-~--~ 252 (954)
T PRK05367 187 EPLGIEVVVGDAAK--A----LDHDDVFGV-LLQYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLL-T--P 252 (954)
T ss_pred HhCCCEEEEecCcc--C----CCcccEEEE-EEecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCC-C--C
Confidence 01112333444322 1 112345554 4455667777765 999999999999999999755322111 1 1
Q ss_pred ccccCCcccEEEec--cc---CC-CccceeeEEeCHHHHhhccCCCC-------c-------------------CCCCCh
Q 012368 301 HEHYGIFPDIMTLA--KP---LA-GGLPIGAALVTEKVASAINYGDH-------G-------------------STFAGS 348 (465)
Q Consensus 301 ~~~~~~~pdi~t~s--K~---lg-~G~~iG~v~~~~~i~~~~~~~~~-------~-------------------~t~~~~ 348 (465)
.. .+..|+++.+ |. +| ||-..|++.+++++...+.+... + .|.+..
T Consensus 253 pg--e~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNic 330 (954)
T PRK05367 253 PG--EMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNIC 330 (954)
T ss_pred hh--hcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccc
Confidence 11 2346777653 54 22 34458999999988776642210 0 011111
Q ss_pred -HHHHHHHHHH--HHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCc
Q 012368 349 -PLVCNAAIAV--LDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGL 422 (465)
Q Consensus 349 -~~~~~aa~a~--L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv 422 (465)
..+..|..++ +..+.. ++..+++..+..+++++|.+. .+..... .....+.+.++.+..++.++|+++||
T Consensus 331 t~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~--G~~~~~~--~~f~~~~~~~~~~~~~i~~~l~~~gi 406 (954)
T PRK05367 331 TAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL--GLEVVHD--SFFDTLTVEVGGDAAAVLARALAAGI 406 (954)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc--CcccCCC--CCCCeEEEeCCCCHHHHHHHHHHCCc
Confidence 1112222222 233333 234556666777777766542 2222111 11122334444467889999999999
Q ss_pred eEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 423 LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 423 ~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
.+..... +.+|+++....|++||+.+++.|.
T Consensus 407 ~~~~~~~-~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 407 NLRRVDD-DHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred eeccccC-CEEEEEecccCCHHHHHHHHHHHc
Confidence 9865433 679999999999999999999996
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.5e-09 Score=108.78 Aligned_cols=294 Identities=16% Similarity=0.096 Sum_probs=165.4
Q ss_pred HHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC-CCCcCCC
Q 012368 142 QIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-KEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~~~~ 219 (465)
..+..+..++.+|.+ ..+.+||.|.+|.+++..+.. ++++|++ +...|-+...++.+++ .+.|..+
T Consensus 207 I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~-----------~gd~Vlv-~RN~HKSv~~al~L~ga~Pvyl~P 274 (755)
T PRK15029 207 FGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT-----------DNDVVVV-DRNCHKSIEQGLILTGAKPVYMVP 274 (755)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcC-----------CCCEEEe-ecccHHHHHHHHHHcCCeEEEecc
Confidence 455556667778855 566778888888877776652 5666665 5556777777776654 3444432
Q ss_pred CCCCCCCce-Eee--CCCHHHHHhhcCC--CCe--------EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 012368 220 FEPVMPGVN-FVE--YGNIEATRKLIQP--GKT--------AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286 (465)
Q Consensus 220 ~~~~~~~~~-~~~--~~d~~~le~~l~~--~~~--------a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D 286 (465)
... ..++. -++ .-+.+.++++|+. ... ++|++.|.. .|+... +++|.++|+++++.|++|
T Consensus 275 ~~~-~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvD 347 (755)
T PRK15029 275 SRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLHFD 347 (755)
T ss_pred ccc-ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEEEE
Confidence 210 11110 011 0137889888852 111 566666643 354443 899999999999999999
Q ss_pred ccccCCCCCCccccc-ccc-----C-Cccc-EEEec--ccCCCccceeeEEeC--------HHHHhhccCCCCcCCCCCh
Q 012368 287 EVQCGLGRTGYLWAH-EHY-----G-IFPD-IMTLA--KPLAGGLPIGAALVT--------EKVASAINYGDHGSTFAGS 348 (465)
Q Consensus 287 Ev~~g~gr~g~~~~~-~~~-----~-~~pd-i~t~s--K~lg~G~~iG~v~~~--------~~i~~~~~~~~~~~t~~~~ 348 (465)
|++.+.......+.. ... . ..+| +++-| |.+++=-..+++-.+ +.+.+.+. ...|.+.+
T Consensus 348 EAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~---~~qSTSPS 424 (755)
T PRK15029 348 EAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYM---MHATTSPL 424 (755)
T ss_pred CccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHH---HHcCCCcH
Confidence 998652222222211 111 1 3477 66656 877641111222222 12222222 23344555
Q ss_pred HHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcC------------C-----------------------
Q 012368 349 PLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARN------------P----------------------- 390 (465)
Q Consensus 349 ~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~------------~----------------------- 390 (465)
-+-++..-.+...++. ..++++..+....+++.+.++..++ |
T Consensus 425 Y~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 504 (755)
T PRK15029 425 YAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLT 504 (755)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccccchhhhc
Confidence 5555554444444432 3566777777888888886643210 0
Q ss_pred ---Cceeee------cc-----------ceEEEEEe---c---------CChHHHHHHHHHCCceEeecCCCCEEEEecC
Q 012368 391 ---HVKDVR------GL-----------GLIIGIEF---D---------VSATPVVDACRDSGLLVLTAGKGNVVRLVPP 438 (465)
Q Consensus 391 ---~~~~~~------~~-----------g~~~~i~~---~---------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~ 438 (465)
...... +. .+=+.+.. + .++..+.+.|.++||.+--.+. ..+-+.++
T Consensus 505 ~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~-~~vL~l~s 583 (755)
T PRK15029 505 TVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTD-FQIMFLFS 583 (755)
T ss_pred cccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecCC-CeEEEEeC
Confidence 000010 00 01111211 1 1234788889889999987665 44555567
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 012368 439 LIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 439 ~~~t~e~i~~~l~~l~~~l~ 458 (465)
...|++++++++++|.++.+
T Consensus 584 ~g~t~~~~~~L~~aL~~~~~ 603 (755)
T PRK15029 584 MGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 78899999999999987744
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-07 Score=89.73 Aligned_cols=317 Identities=17% Similarity=0.178 Sum_probs=179.8
Q ss_pred CCHHHHHHHHHHHhh-ccccc---CCC-CCHH---HHH-HHHHHHhhcCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQANV-LTHVS---NMY-YSIP---QIE-LAKRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~---~~~-~~~~---~~~-la~~l~~~~~~~~v-~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.+|.|.+|.-..+.. +..++ .+| ..+. .+. ..++..++++.+.+ +=-.||+.||..++.++..
T Consensus 38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~------- 110 (413)
T COG0112 38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQ------- 110 (413)
T ss_pred CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcC-------
Confidence 568899988776643 22111 111 2222 223 33444556775533 2346899999999887773
Q ss_pred CCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
|+|+|+..+-..-|+....... ++.. +.....+..++...+ |.|++++.....++++||+-...
T Consensus 111 ----pGDtimgm~l~~GGHltHg~~v~~sG~~-~~~v~Y~vd~et~~I---DyD~~~k~a~e~kPK~ii~G~Sa------ 176 (413)
T COG0112 111 ----PGDTIMGLDLSHGGHLTHGSPVNFSGKL-FNVVSYGVDPETGLI---DYDEVEKLAKEVKPKLIIAGGSA------ 176 (413)
T ss_pred ----CCCeEecccCCCCCcccCCCCCCcccee-EEeEecccccccCcc---CHHHHHHHHHHhCCCEEEECccc------
Confidence 7999999887765665433221 1211 111111111111111 78899988876677777764321
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCH-HHHhhccC
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE-KVASAINY 338 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~-~i~~~~~~ 338 (465)
.+-.-.+++++++|++.|++|++|-+|- |+--.|.. ..-.. ..|++|-+ |+|.| -|.|.+++++ ++.+.+..
T Consensus 177 Y~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~--p~P~~-~AdvVTtTTHKTlrG-PrGG~Il~~~eel~kkin~ 252 (413)
T COG0112 177 YSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVH--PNPLP-HADVVTTTTHKTLRG-PRGGIILTNDEELAKKINS 252 (413)
T ss_pred cccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccC--CCCCC-ccceEeCCcccCCCC-CCceEEEeccHHHHHHhhh
Confidence 1111228999999999999999999864 33222211 11111 26788655 88865 3778888884 88888875
Q ss_pred CCCcCCCCChHHHHHHH-HHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChH
Q 012368 339 GDHGSTFAGSPLVCNAA-IAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSAT 411 (465)
Q Consensus 339 ~~~~~t~~~~~~~~~aa-~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~ 411 (465)
.-+.+..+++-+-..|| ..++....+ .++.+++.++.+.|.+.|.+. .+.++..- -..-++.+++. ....
T Consensus 253 aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~--G~~vvsGg-TdnHl~lVDl~~~~~~Gk 329 (413)
T COG0112 253 AVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER--GFKVVSGG-TDNHLVLVDLRSKGLTGK 329 (413)
T ss_pred hcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc--CCeEecCC-ccceEEEEEcccCCCCHH
Confidence 44444444433332232 233443333 346667777787777777663 23222211 11234556663 2345
Q ss_pred HHHHHHHHCCceEee----cCC-----CCEEEEecC----CCCcHHHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLT----AGK-----GNVVRLVPP----LIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~----~~~-----~~~lRi~~~----~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+....|-+.||.+.- ... ..-|||-.+ ..+.++|+++..+.|.+++..
T Consensus 330 ~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 330 KAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred HHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 555566677887742 211 234888654 335678999998888888865
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-09 Score=102.07 Aligned_cols=279 Identities=18% Similarity=0.221 Sum_probs=146.3
Q ss_pred HHHHhhcCCC----eE-EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC-----CC-C
Q 012368 147 KRLVACSFAD----RV-FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-----KE-H 215 (465)
Q Consensus 147 ~~l~~~~~~~----~v-~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-----~~-~ 215 (465)
+++++.++.+ .+ +=..||+.|+..++.++.. ++|+|+.++...-|+......... .. .
T Consensus 73 ~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~-----------pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~ 141 (399)
T PF00464_consen 73 ERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLK-----------PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLY 141 (399)
T ss_dssp HHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT------------TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHH
T ss_pred HHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHh-----------hcCcEEecChhhcccccccccccccccccccce
Confidence 3445566655 32 3346899999998887663 799999998776455432211110 00 0
Q ss_pred cCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCC
Q 012368 216 YRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGR 294 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr 294 (465)
+.....+..++... -|.+++++++...++++||+...... -+-.+++++++|++.|++|++|-.|. |+--
T Consensus 142 ~~~~~y~~d~~~~~---ID~d~l~~~a~~~kPklIi~G~S~y~------~~~d~~~~reIad~vga~l~~D~sH~~GLIa 212 (399)
T PF00464_consen 142 FESVPYPVDPDTGL---IDYDELEKLAKEHKPKLIICGASSYP------RPIDFKRFREIADEVGAYLMADISHIAGLIA 212 (399)
T ss_dssp SEEEEEEB-TTTSS---B-HHHHHHHHHHH--SEEEEE-SSTS------S---HHHHHHHHHHTT-EEEEE-TTTHHHHH
T ss_pred EEEEeeeeecCCCe---ECHHHHHHHHhhcCCCEEEECchhcc------CccCHHHHHHHHHhcCcEEEeccccccccee
Confidence 00000011111111 17899999887667889998875422 11227999999999999999999875 2311
Q ss_pred CCccccccccCCcccEEEec--ccCCCccceeeEEeC--------------HHHHhhccCCCCcCCCCChHHH-HHHHHH
Q 012368 295 TGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT--------------EKVASAINYGDHGSTFAGSPLV-CNAAIA 357 (465)
Q Consensus 295 ~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~--------------~~i~~~~~~~~~~~t~~~~~~~-~~aa~a 357 (465)
.|. + ..-+.. .|++|.| |+|.| -+.|.++.+ +++.+.+......+..+++-.. .+|...
T Consensus 213 ~g~-~-~~P~~~-ADvvt~sThKtl~G-PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAv 288 (399)
T PF00464_consen 213 GGL-F-PNPFPY-ADVVTGSTHKTLRG-PRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAV 288 (399)
T ss_dssp TTS-S---GCCT-SSEEEEESSGGG-S-SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHH
T ss_pred hhe-e-cCcccc-ceEEEeeccccccc-cCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHH
Confidence 121 1 122232 6899876 88865 366888888 7777777543222222222222 233333
Q ss_pred HHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHHHHHHHHHCCceEeec----
Q 012368 358 VLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTA---- 427 (465)
Q Consensus 358 ~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~---- 427 (465)
+|....+ .++.+++.++.+.|.+.|.+. .+.++.. .....++++++. .+..+..+.|.+.||.+...
T Consensus 289 al~ea~~~~fk~Ya~qVv~NAk~La~~L~~~--G~~v~~g-gTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~ 365 (399)
T PF00464_consen 289 ALKEALSPEFKEYAKQVVKNAKALAEALQER--GFKVVTG-GTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPG 365 (399)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--T-EEGGG-S-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TT
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHHHHhhC--CcEEEEC-CCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCC
Confidence 4444333 356677777888887777664 3322221 122346677772 35567778888999998632
Q ss_pred CC----CCEEEEecC----CCCcHHHHHHHHHH
Q 012368 428 GK----GNVVRLVPP----LIISEQELDQAVEI 452 (465)
Q Consensus 428 ~~----~~~lRi~~~----~~~t~e~i~~~l~~ 452 (465)
.. ...+||..+ ....++|++++.+.
T Consensus 366 d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 366 DRSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL 398 (399)
T ss_dssp TSTTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred CCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence 11 246999754 33466777766554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-08 Score=90.17 Aligned_cols=338 Identities=17% Similarity=0.151 Sum_probs=203.6
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcc------ccc----CCCCCHHHHHHHHHHHhhcC--CCeEEecCCHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT------HVS----NMYYSIPQIELAKRLVACSF--ADRVFFSNTGT 165 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~------~~~----~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~ 165 (465)
...+-+++| +||.-+..+.+.+.+.++++. |.. +...+++ ....++...| .+.|-++||-+
T Consensus 66 ~~~iYlcGN----SLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~---il~l~~~iVGA~e~EvavmNsLT 138 (465)
T KOG3846|consen 66 KPVIYLCGN----SLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEP---ILPLLAPIVGAQENEVAVMNSLT 138 (465)
T ss_pred CCeEEEecc----ccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchh---hhhhhhhhccCCchhhhhHhhhh
Confidence 334445544 689888888888887777642 111 1112232 3334555566 55788888776
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcC--CCCCCCCC--CceEeeCCCHHHHHhh
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR--SPFEPVMP--GVNFVEYGNIEATRKL 241 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~d~~~le~~ 241 (465)
--+...+-...+-| +.|-+|+....+|+.......+........ ..+....+ +-..+ ..+++-+.
T Consensus 139 vNlh~Ll~sFyKPT--------ekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetl---RteDILd~ 207 (465)
T KOG3846|consen 139 VNLHSLLISFYKPT--------EKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETL---RTEDILDT 207 (465)
T ss_pred hHHHHHHHHhcCCc--------chhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccch---hHHHHHHH
Confidence 55555444333222 247789998888876665543321100000 00000001 00111 24555555
Q ss_pred cC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCC
Q 012368 242 IQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG 319 (465)
Q Consensus 242 l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~ 319 (465)
|+ .+.+|+|++..++--+|.... +.+|...-+..|+++-+|=++. +|- -......||+..-+.|--|.+..
T Consensus 208 IEkngDeiA~v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgN--VpL~LHdWgVDFACWCSYKYlna 280 (465)
T KOG3846|consen 208 IEKNGDEIALVCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGN--VPLQLHDWGVDFACWCSYKYLNA 280 (465)
T ss_pred HHhcCCeEEEEEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hcC--CceEEeecCCceEEEeeeccccc
Confidence 54 567999999999988887765 7777776677799999998886 432 23344456664444455588764
Q ss_pred c-cceeeEEeCHHHHhhccC------------------------CCCcCCCC-ChHHHHHHHHHHHHHhcCchHHHHHHH
Q 012368 320 G-LPIGAALVTEKVASAINY------------------------GDHGSTFA-GSPLVCNAAIAVLDKISNPAFLASVSK 373 (465)
Q Consensus 320 G-~~iG~v~~~~~i~~~~~~------------------------~~~~~t~~-~~~~~~~aa~a~L~~~~~~~~~~~~~~ 373 (465)
| -.||.+...+.......+ +..+.-.+ .+.+..+|....|++..+-. .+.+++
T Consensus 281 GaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRk 359 (465)
T KOG3846|consen 281 GAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRK 359 (465)
T ss_pred CCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhh
Confidence 3 244444443332221111 11122222 23345566677888775444 566777
Q ss_pred HHHHHHHHHHHHHHcC-----C-----------CceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEec
Q 012368 374 KGHYFKETLKQKLARN-----P-----------HVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP 437 (465)
Q Consensus 374 ~~~~l~~~l~~~~~~~-----~-----------~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~ 437 (465)
+.-.|...|+.+++.. + ....+..+|.-+.+.|+.+...++++|.++||.+....+ +.+|+.|
T Consensus 360 rS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~~~vfqeL~krGv~~DkR~P-NvIRvAP 438 (465)
T KOG3846|consen 360 RSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPTPKVFQELHKRGVIGDKRRP-NVIRVAP 438 (465)
T ss_pred hhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCchHHHHHHHHcCeeccccCC-CceEeec
Confidence 7766666666654321 1 112345668888888877778899999999999877655 8999998
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 438 -PLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 438 -~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++..+-.|+..++..|.+++..+..
T Consensus 439 vpLYN~f~Dvy~f~n~L~e~~d~~es 464 (465)
T KOG3846|consen 439 VPLYNTFSDVYIFVNALNEAMDKLES 464 (465)
T ss_pred chhhccHHHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999887653
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=104.90 Aligned_cols=225 Identities=18% Similarity=0.183 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHhhcCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC-CCCc
Q 012368 139 SIPQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-KEHY 216 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~~~~-v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~ 216 (465)
.....+..+..++.+|.++ .+.+||.|.+|.+++.++.. ++++|++.. ..|-+...++.+++ .+.|
T Consensus 65 ~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~-----------~gd~VLv~R-N~HkSv~~alil~ga~Pvy 132 (417)
T PF01276_consen 65 EGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCR-----------PGDKVLVDR-NCHKSVYNALILSGAIPVY 132 (417)
T ss_dssp BTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTT-----------TTCEEEEET-T--HHHHHHHHHHTEEEEE
T ss_pred ccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcC-----------CCCEEEEcC-CcHHHHHHHHHHcCCeEEE
Confidence 3346677777888899555 55667778888888877662 577766655 45777776766554 3333
Q ss_pred CCCCCCCCCCc-eEeeCC--CHHHHHhhcC--CCCeE---EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 012368 217 RSPFEPVMPGV-NFVEYG--NIEATRKLIQ--PGKTA---AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV 288 (465)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~--d~~~le~~l~--~~~~a---~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv 288 (465)
..+. ....++ .-++.. +.+.++++|+ +...+ +||+.|.. .|+... +++|.++|+++++.|++||+
T Consensus 133 i~p~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 133 IPPE-DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp EEEE-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-T
T ss_pred ecCC-ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEcc
Confidence 3221 101111 111111 3488988887 33334 66776643 355554 99999999999999999999
Q ss_pred ccC-CCCCCccccccccCCccc-------EEEec--ccCCCccceeeEEeCHHH-H--hhccC-CCCcCCCCChHHHHHH
Q 012368 289 QCG-LGRTGYLWAHEHYGIFPD-------IMTLA--KPLAGGLPIGAALVTEKV-A--SAINY-GDHGSTFAGSPLVCNA 354 (465)
Q Consensus 289 ~~g-~gr~g~~~~~~~~~~~pd-------i~t~s--K~lg~G~~iG~v~~~~~i-~--~~~~~-~~~~~t~~~~~~~~~a 354 (465)
+.. |+.. . +.........| +++-| |.+++=-..+++-.+.+. + +.+.. .....|.+.+-+-++.
T Consensus 206 hGah~~F~-~-lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmAS 283 (417)
T PF01276_consen 206 HGAHFGFH-P-LPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMAS 283 (417)
T ss_dssp T-TTGGCS-G-GGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHH
T ss_pred ccccccCC-C-CccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHH
Confidence 865 2222 2 22223344556 77766 887642233444443321 1 22221 1223344556555665
Q ss_pred HHHHHHHhc-C--chHHHHHHHHHHHHHHHHHH
Q 012368 355 AIAVLDKIS-N--PAFLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 355 a~a~L~~~~-~--~~~~~~~~~~~~~l~~~l~~ 384 (465)
.-.+.+.++ . ..++++..+....+|+.+++
T Consensus 284 lD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~ 316 (417)
T PF01276_consen 284 LDVARAQMEEEEGRELLEEAIELAEEFRKKINR 316 (417)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 555555552 2 45788888888999998865
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-07 Score=90.05 Aligned_cols=309 Identities=13% Similarity=0.061 Sum_probs=170.9
Q ss_pred CCHHHHHHHHHHHhhccc-------ccCCC--CCHHHHHHHHHHHhhcC-CC--eEEecCC-HHHHHHHHHHHHHHHhhh
Q 012368 115 GDADWIKAVVDQANVLTH-------VSNMY--YSIPQIELAKRLVACSF-AD--RVFFSNT-GTEANEAAIKFARKFQRH 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~-------~~~~~--~~~~~~~la~~l~~~~~-~~--~v~~~~s-G~eA~~~al~~a~~~t~~ 181 (465)
-|++|.+++.+.+..... .+.+. ......+..+.|.+.++ ++ +|+|..| |+.+.++++.-+..
T Consensus 15 lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~---- 90 (364)
T PRK12462 15 LPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSR---- 90 (364)
T ss_pred CCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCC----
Confidence 357888888877654211 11111 11225566677777776 22 5655555 88888887775541
Q ss_pred cCCCCCCCCceEE-EEcCCcccCcccccc--ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCC
Q 012368 182 SNPDSKEPATEFV-SFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGE 258 (465)
Q Consensus 182 ~~~~~~~~~~~ii-~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~ 258 (465)
++++++ +...++.|.-..-.. .+ ... ........+...+| +++.+ .+ +.+.+.|.+.++...
T Consensus 91 -------~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~--~~~~~~~~~~~~~p--~~~~~--~~-~~d~~~v~~t~NETs 155 (364)
T PRK12462 91 -------PGAAAPEYVTTGYWSRKAIGEASRVA-AMR--VVWDGAASGYRTLP--SLAEL--DW-DARAPFRHYVSNETV 155 (364)
T ss_pred -------CCCcEEEEEeCCHHHHHHHHHHHhcC-Cce--EecCcCCCCCCcCC--CHHHh--cc-CCCCcEEEEccCCCC
Confidence 456555 444444444322111 11 100 00000001111111 34443 12 224667777777777
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhc
Q 012368 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAI 336 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~ 336 (465)
.|+..+ ++.+.+++++|+|-+-+ ++ +..+-.+.+ |++..| |.+| .-.++.++.+++.++..
T Consensus 156 tGv~~~---------~~~~~~~~llvvD~sS~-~~--s~pid~~~~----dvi~agsQKnlg-P~Gltvvivs~~al~~~ 218 (364)
T PRK12462 156 EGLQFP---------DAAGLPDSPLIADMSSD-FM--SRPFDVEAY----GMVYAHAQKNLG-PAGVTVAIIRRALLERV 218 (364)
T ss_pred ceEecC---------cccccCCCeEEEEcCch-hh--CCCCChHHc----cEEEeeccccCC-CCceEEEEECHHHHhhc
Confidence 787654 23334699999998765 32 333334443 777655 9998 34567888899888765
Q ss_pred cCC-----------CCcCCCCC-hHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHcCC----Cceeeeccc
Q 012368 337 NYG-----------DHGSTFAG-SPLVCNAAIAVLDKISNP-AFLASVSKKGHYFKETLKQKLARNP----HVKDVRGLG 399 (465)
Q Consensus 337 ~~~-----------~~~~t~~~-~~~~~~aa~a~L~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~g 399 (465)
... ....+++. +.....+...+|+.+.++ +=++.+.++.+...+.|.+.++..+ .......+.
T Consensus 219 ~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS 298 (364)
T PRK12462 219 PDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARS 298 (364)
T ss_pred cccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcC
Confidence 431 12345544 455667788888887555 1234444444444444444444433 111222222
Q ss_pred eE-EEEEec--CChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 400 LI-IGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 400 ~~-~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+ +.+.+. ....+|.+.+.++|+.-..++. -+.+|.++=-+++.|+++.+++-++++-++
T Consensus 299 ~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 299 TMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 22 223332 2356788999999998765543 133899887788999999988888776543
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-07 Score=97.74 Aligned_cols=297 Identities=14% Similarity=0.070 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccc-cccc-CCCCc
Q 012368 140 IPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA-LALT-SKEHY 216 (465)
Q Consensus 140 ~~~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~-~~~~-~~~~~ 216 (465)
....+..+..++.+|.+ ..+++||.|.+|.+++.++.. ++++|+ ++...|-+...+ +.++ ..+.|
T Consensus 174 G~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~-----------~Gd~VL-vdRN~HKSv~hgaLiLsGa~PVY 241 (720)
T PRK13578 174 GAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLT-----------PGDLVL-FDRNNHKSNHHGALIQAGATPVY 241 (720)
T ss_pred hHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcC-----------CCCEEE-eecccHHHHHHHHHHHcCCeEEE
Confidence 33566666677788865 466678888888888876662 566555 556667777653 5444 44555
Q ss_pred CCCCCCCCCCc-eEeeCC--CHHHHHhhcCCC----------CeEEEEEcccCCCCCcccCCHHHHHHHHHH-HHHhCCE
Q 012368 217 RSPFEPVMPGV-NFVEYG--NIEATRKLIQPG----------KTAAVFVEPIQGEGGIYSATKEFLQFLRDA-CDDAGAL 282 (465)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~--d~~~le~~l~~~----------~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~~g~l 282 (465)
..+-.. .-++ .-++.. +.+.++++|+.. -.++||+.|.. .|++.. +++|.++ |+.++ .
T Consensus 242 l~P~~n-~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-~ 313 (720)
T PRK13578 242 LETARN-PFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-Y 313 (720)
T ss_pred eecccc-ccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-c
Confidence 432210 0111 011111 356688887632 13456666543 354443 7888888 68888 9
Q ss_pred EEEeccccCCCCCCcc---ccccccCCccc----EEEec--ccCCCccceeeEEeCH-------------HHHhhccCCC
Q 012368 283 LVFDEVQCGLGRTGYL---WAHEHYGIFPD----IMTLA--KPLAGGLPIGAALVTE-------------KVASAINYGD 340 (465)
Q Consensus 283 lI~DEv~~g~gr~g~~---~~~~~~~~~pd----i~t~s--K~lg~G~~iG~v~~~~-------------~i~~~~~~~~ 340 (465)
|++||++.+.-..... +........+| ++|-| |.+++=--.+++-.+. .+.+.+. .
T Consensus 314 llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~--m 391 (720)
T PRK13578 314 ILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFM--L 391 (720)
T ss_pred EEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHH--H
Confidence 9999997653222221 11111233566 77666 8776411223332322 2222222 2
Q ss_pred CcCCCCChHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHcCCCce--ee--------------------
Q 012368 341 HGSTFAGSPLVCNAAIAVLDKIS---NPAFLASVSKKGHYFKETLKQKLARNPHVK--DV-------------------- 395 (465)
Q Consensus 341 ~~~t~~~~~~~~~aa~a~L~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~-------------------- 395 (465)
+ .|.+.+-+-++..-.+-..+. -..++++..+....+|+.|.+....+..+. .+
T Consensus 392 ~-qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w 470 (720)
T PRK13578 392 H-ASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFF 470 (720)
T ss_pred H-cCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhccccccc
Confidence 2 233344333333322233232 245777788888888887743322221110 00
Q ss_pred --------ecc-----------ceEEEEEe-cCC------------hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcH
Q 012368 396 --------RGL-----------GLIIGIEF-DVS------------ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISE 443 (465)
Q Consensus 396 --------~~~-----------g~~~~i~~-~~~------------~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~ 443 (465)
.|. .+=+.+.. ..+ +..+.+.|.++||.+--.+. ..+-+-++...|+
T Consensus 471 ~~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~-~~vL~l~s~g~t~ 549 (720)
T PRK13578 471 SFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDL-NSILFLLTPAEDM 549 (720)
T ss_pred ccccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCC-CeEEEEeCCCCCH
Confidence 000 00011111 112 56788889889999987765 5565666778899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012368 444 QELDQAVEILCKTLPVL 460 (465)
Q Consensus 444 e~i~~~l~~l~~~l~~~ 460 (465)
++++.++++|.++-+..
T Consensus 550 ~~~~~Lv~aL~~f~~~~ 566 (720)
T PRK13578 550 AKLQQLVAMLARFEKHI 566 (720)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998775433
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-07 Score=92.05 Aligned_cols=233 Identities=21% Similarity=0.220 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhcC-C--------CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCC-C-CCceEEEEcCCcccCccccccc
Q 012368 142 QIELAKRLVACSF-A--------DRVFFSNTGTEANEAAIKFARKFQRHSNPDSK-E-PATEFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 142 ~~~la~~l~~~~~-~--------~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~-~-~~~~ii~~~~~yhg~~~~~~~~ 210 (465)
+.++.+++++.++ + ..-+||+||++||..|+.++|.........+. . ..+.+++.+..-|-+..-+...
T Consensus 81 E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~ 160 (373)
T PF00282_consen 81 EREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARI 160 (373)
T ss_dssp HHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHH
T ss_pred hHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcce
Confidence 6677778888877 3 25789999999999999999865421100000 0 1234566666556555444443
Q ss_pred cCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcC----CCC-eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 012368 211 TSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQ----PGK-TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~----~~~-~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 280 (465)
.+-. +..+|.+ |+++|+++|+ ... +.+|+..--....|.+-+ +++|+++|++|+
T Consensus 161 lGlg------------~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~ 224 (373)
T PF00282_consen 161 LGLG------------VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADICEKYN 224 (373)
T ss_dssp TTSE------------EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT
T ss_pred eeeE------------EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhhccccc
Confidence 3222 2222221 7888988875 222 334444444444566544 999999999999
Q ss_pred CEEEEeccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeCHH--HHhhcc--CCCCc-----------
Q 012368 281 ALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTEK--VASAIN--YGDHG----------- 342 (465)
Q Consensus 281 ~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~~--i~~~~~--~~~~~----------- 342 (465)
++|++|-++.|....-...-.-..++ ..|-++++ |.++..++.|+++.+.. +...+. .....
T Consensus 225 ~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~ 304 (373)
T PF00282_consen 225 IWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYD 304 (373)
T ss_dssp -EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGC
T ss_pred eeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccc
Confidence 99999999887311111111112233 35777654 99888899999988753 223231 11111
Q ss_pred ---CCCCC-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012368 343 ---STFAG-SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 343 ---~t~~~-~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
.++.+ -.........+|+.+..+.+.+.+++..+. .+.+.+.+.+.+.
T Consensus 305 ~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~-a~~l~~~l~~~~~ 356 (373)
T PF00282_consen 305 YGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIEL-ARYLADRLRKDPR 356 (373)
T ss_dssp EEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTT
T ss_pred cccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHHHhCCC
Confidence 12222 244455566667766566655555444332 3344444455553
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-06 Score=92.57 Aligned_cols=293 Identities=11% Similarity=0.085 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHhhcCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC-CCCcC
Q 012368 140 IPQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-KEHYR 217 (465)
Q Consensus 140 ~~~~~la~~l~~~~~~~~-v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~~ 217 (465)
....+..+..++.++.++ .+.+||.|.+|.+++.++.. ++++|+ ++...|-+...++.+++ .+.|.
T Consensus 195 G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~-----------~Gd~VL-vdRN~HKSv~~aLilsga~PVYl 262 (713)
T PRK15399 195 GPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAP-----------AGSTLL-IDRNCHKSLAHLLMMSDVVPIWL 262 (713)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcC-----------CCCEEE-eecccHHHHHHHHHHcCCeeEEe
Confidence 335666667778888665 55667778888888876652 566555 55666777777766554 44444
Q ss_pred CCCCCCCCCce-EeeC--CCHHHHHhhcCCC-C----eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE-EEecc
Q 012368 218 SPFEPVMPGVN-FVEY--GNIEATRKLIQPG-K----TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALL-VFDEV 288 (465)
Q Consensus 218 ~~~~~~~~~~~-~~~~--~d~~~le~~l~~~-~----~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ll-I~DEv 288 (465)
.+... .-++. -++. -+.+.++++|+.. + .++||+.|.. .|++.. +++|.++| |+.+ ++||+
T Consensus 263 ~P~~n-~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEA 332 (713)
T PRK15399 263 KPTRN-ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSA 332 (713)
T ss_pred ccccc-ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEecc
Confidence 32210 01110 0111 1348888888621 1 4677777633 355443 77788877 6766 69999
Q ss_pred ccCCCCCCcc----ccccccCCcccEE---Eec--ccCCCccceeeEEeCH-----HHHhhccCCCCcCCCCChHHHHHH
Q 012368 289 QCGLGRTGYL----WAHEHYGIFPDIM---TLA--KPLAGGLPIGAALVTE-----KVASAINYGDHGSTFAGSPLVCNA 354 (465)
Q Consensus 289 ~~g~gr~g~~----~~~~~~~~~pdi~---t~s--K~lg~G~~iG~v~~~~-----~i~~~~~~~~~~~t~~~~~~~~~a 354 (465)
+.+.-..... .+.. .+-.+|.+ |-| |.+++=-..+++-.+. .+.+.+. ...|.+.+-+-++.
T Consensus 333 hgah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~---m~~STSPsY~LmAS 408 (713)
T PRK15399 333 WVPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFM---MHTSTSPSYPIVAS 408 (713)
T ss_pred chhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHH---HHcCCCcHHHHHHH
Confidence 8653222221 1111 11135666 444 8776411223333322 2222222 22333445444444
Q ss_pred HHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHc-----CCCce----------------eeec-----------cc
Q 012368 355 AIAVLDKIS---NPAFLASVSKKGHYFKETLKQKLAR-----NPHVK----------------DVRG-----------LG 399 (465)
Q Consensus 355 a~a~L~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~----------------~~~~-----------~g 399 (465)
.-.+...++ -..+.++..+....+|+.+.++... +..+. ...| ..
T Consensus 409 LD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP 488 (713)
T PRK15399 409 VETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDP 488 (713)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCC
Confidence 444444443 2457777888888888888765321 00000 0000 00
Q ss_pred eEEEEEe------------cCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 400 LIIGIEF------------DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 400 ~~~~i~~------------~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+=+.+.. ..++..+.+.|.++||.+--.+. ..+-+.++...|+++++.+++.|.++-+.
T Consensus 489 ~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~-~~vL~l~s~g~t~~~~~~L~~aL~~f~~~ 559 (713)
T PRK15399 489 VKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGP-YNLLFLFSIGIDKTKAMGLLRGLTEFKRA 559 (713)
T ss_pred ceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCC-CeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 0011111 13456788899999999987765 55666677888999999999999876443
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-05 Score=78.28 Aligned_cols=311 Identities=16% Similarity=0.151 Sum_probs=164.0
Q ss_pred cCCCCCHHHHH-HHHHHHhhcccccCCCCCHH-H------HHHHHHHHhhcCCC--eEEecCCHHHHHHHHHHHHHHHhh
Q 012368 111 ALGHGDADWIK-AVVDQANVLTHVSNMYYSIP-Q------IELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 111 ~lGh~~p~v~~-a~~~~~~~~~~~~~~~~~~~-~------~~la~~l~~~~~~~--~v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.++|--|.|+. .+.+.-+-++. +++|..+- . -++-..++++.|.+ ..-....+|.+-++++.+.| .++
T Consensus 84 yY~~~~P~vI~rnile~pewyTa-YTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r-~~k 161 (450)
T COG0403 84 YYDTYTPPVILRNILENPEWYTA-YTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKR-VTK 161 (450)
T ss_pred ccCCcCcHHHHHHhhcCcccccc-CCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHH-hhc
Confidence 46664455544 66553332222 23343332 1 12333455666633 44455556655554444333 332
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCC
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G 260 (465)
.+++++++.... |..+..++.. ...+..-.+...+++|+++|++. ...++.++++.-.+..|.
T Consensus 162 -------~k~~~~~V~~~v-hpqt~~Vl~T--------ra~~~g~~i~~~~~~d~~~l~~~-~~~~~~gv~vQyP~~~G~ 224 (450)
T COG0403 162 -------KKRNKFLVPKDV-HPQTLDVLRT--------RAEGLGIEIEVVDADDLDDLESA-DDGDVFGVLVQYPNTFGI 224 (450)
T ss_pred -------CcCceEEecCCC-CHHHHHHHHh--------hcccCceEEEEeccchhhhhhhc-cccCeEEEEEecCCCCCc
Confidence 134666665544 5555444431 11233345566677799999998 655788888876654442
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEE--eccccCCCCCCccccccccCCcccEEE-----ecccCC-CccceeeEEeCHHH
Q 012368 261 IYSATKEFLQFLRDACDDAGALLVF--DEVQCGLGRTGYLWAHEHYGIFPDIMT-----LAKPLA-GGLPIGAALVTEKV 332 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~--DEv~~g~gr~g~~~~~~~~~~~pdi~t-----~sK~lg-~G~~iG~v~~~~~i 332 (465)
.. ..+++|.+.++++|+++|+ |=+--++ .-.+ .. ...||++ ||=.++ ||-..|++.++++.
T Consensus 225 ~~----~d~~~l~~~~h~~~al~~v~aDplaL~L--L~pP---Ge--~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~ 293 (450)
T COG0403 225 VE----EDLRALIEAAHSAGALVIVAADPLALGL--LKPP---GE--FGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEF 293 (450)
T ss_pred cc----hhHHHHHHHHhhcCCEEEEEechhHhhc--cCCc---cc--cCCceEEecCcccCCCcCCCCcceeeeeEhHhH
Confidence 33 2389999999999998875 3221111 1111 11 2356664 555566 46778888888888
Q ss_pred HhhccCCC----------------------------CcCCCCChHHHHHHHHH-HHHHhcCc---hHHHHHHHHHHHHHH
Q 012368 333 ASAINYGD----------------------------HGSTFAGSPLVCNAAIA-VLDKISNP---AFLASVSKKGHYFKE 380 (465)
Q Consensus 333 ~~~~~~~~----------------------------~~~t~~~~~~~~~aa~a-~L~~~~~~---~~~~~~~~~~~~l~~ 380 (465)
+..+-... -.+..+.|..-++-+.+ .+-.+..+ ++.+++.++..++.+
T Consensus 294 ~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~ 373 (450)
T COG0403 294 KRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAA 373 (450)
T ss_pred hhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 76552110 11222333222221111 12223333 334445555566666
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEe--c-CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGLGLIIGIEF--D-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~--~-~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+|++. +....+.....|-.+.+ + .....+.++....|+.++.-.. ..+-++..=.+|+++|+.+++.+...
T Consensus 374 ~L~~~----~~g~~~~~~~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~~-~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 374 GLKEI----GAGVELVFDHFFDTFTVRVPEEVAEALLAAAIAGGINLRRVDA-DTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred HHhhc----CCceEeccccceeeEEEecchhHHHHHHHHHHhcCCceeeecC-CceEEEeecccCHHHHHHHHHHHhhh
Confidence 66543 21111111233323333 3 2345566777778888876544 45667777778999999999888754
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.5e-06 Score=87.78 Aligned_cols=272 Identities=11% Similarity=0.077 Sum_probs=151.3
Q ss_pred HHHHHHHHhhcCCC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 143 IELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 143 ~~la~~l~~~~~~~--~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
-++-..++++.|.+ ..-+..+++.+-++++.+.+. ++ .++++|++.+..+ ..+..++..- .
T Consensus 112 ~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~-~~-------~~~~~vlv~~~~h-P~~~~v~~t~--------a 174 (939)
T TIGR00461 112 LNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNV-SK-------KKANKFFVAKDLH-PQTKSVLHTR--------A 174 (939)
T ss_pred HHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHh-hc-------CCCCEEEECCCCC-cchHHHHHHH--------H
Confidence 35566678888855 557778888777755554332 21 0246777766554 4433222210 0
Q ss_pred CCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc
Q 012368 221 EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300 (465)
Q Consensus 221 ~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~ 300 (465)
.+..-.+..+ |+++|++.+ +++++++ .+++..|.+.. +++|.++++++|+++|++--...++-.-.
T Consensus 175 ~~~g~~v~~~---~~~~l~~~~---~~~~v~~-q~Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~ll~~--- 240 (939)
T TIGR00461 175 KPFGIEVIVV---DCSDIKKAV---DVFGCLL-QYPATDGSILD----YKQLIDALHSHKSLVSVAADLMALTLLTP--- 240 (939)
T ss_pred HhcCcEEEEE---cHHHHhhcC---CEEEEEE-ECCCCCeEEec----HHHHHHHHHHcCCEEEEEechHHhCCcCC---
Confidence 1111223333 567777666 3555554 33345566643 89999999999999998654332211111
Q ss_pred ccccCCcccEEE-ecccCC----C-ccceeeEEeCHHHHhhccCCC-------C-------------------cCC--CC
Q 012368 301 HEHYGIFPDIMT-LAKPLA----G-GLPIGAALVTEKVASAINYGD-------H-------------------GST--FA 346 (465)
Q Consensus 301 ~~~~~~~pdi~t-~sK~lg----~-G~~iG~v~~~~~i~~~~~~~~-------~-------------------~~t--~~ 346 (465)
-. ++..||++ .+|.|| + |--.|++.+++++...+-... . ..| .+
T Consensus 241 Pg--e~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNIC 318 (939)
T TIGR00461 241 PG--HYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNIC 318 (939)
T ss_pred HH--HcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchh
Confidence 11 12357763 235443 2 445788888888776653210 0 011 11
Q ss_pred ChH-HHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE--EEEEec-CChHHHHHHHHH
Q 012368 347 GSP-LVCNAAIAVLDKISNPA---FLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI--IGIEFD-VSATPVVDACRD 419 (465)
Q Consensus 347 ~~~-~~~~aa~a~L~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~--~~i~~~-~~~~~~~~~l~~ 419 (465)
.+. +...++...+..+..++ +.+++..+..++.+.|.+. .+.. +.. ..| +.+.++ .++.++.+.|.+
T Consensus 319 t~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~--G~~~---~~~-~fF~~~~v~~~~~~~~~i~~~~~~ 392 (939)
T TIGR00461 319 TAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND--PHEL---INK-TWFDTLTVKVGNGISSELLKAAEE 392 (939)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC--CCcc---cCC-CccceEEEEeCCCCHHHHHHHHHH
Confidence 121 11112222234444333 3444555666666666552 2211 111 222 223333 367889999999
Q ss_pred CCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 420 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 420 ~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+||.+..... +.+++++.-.+|++||+.+++.+.
T Consensus 393 ~gi~l~~~~~-~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 393 FNINLRAVDT-TTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred CCCeeeecCC-CEEEEEeecCCCHHHHHHHHHHhc
Confidence 9999876543 689999999999999999999994
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.3e-07 Score=94.16 Aligned_cols=293 Identities=14% Similarity=0.157 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHhhcCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC-CCCc
Q 012368 139 SIPQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-KEHY 216 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~~~~-v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~ 216 (465)
+....+..+..++.++.++ .+.+||.|.+|.+++.++.. ++++|+ ++...|-+...++.+++ .+.|
T Consensus 194 ~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~-----------~Gd~VL-vdRN~HKSv~haLilsga~PVY 261 (714)
T PRK15400 194 SGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAP-----------AGSTVL-IDRNCHKSLTHLMMMSDVTPIY 261 (714)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcC-----------CCCEEE-eecccHHHHHHHHHHcCCeEEE
Confidence 3345666667778888665 55667778888877776652 466555 66666877777766654 4444
Q ss_pred CCCCCCCCCCc-eEeeC--CCHHHHHhhcCC--C---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 012368 217 RSPFEPVMPGV-NFVEY--GNIEATRKLIQP--G---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV 288 (465)
Q Consensus 217 ~~~~~~~~~~~-~~~~~--~d~~~le~~l~~--~---~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv 288 (465)
..+... .-++ .-++. -+.+.+++.|+. + ..++||+.|.. .|++.. +++|.++|+.++ |++||+
T Consensus 262 l~P~rn-~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEA 332 (714)
T PRK15400 262 FRPTRN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSA 332 (714)
T ss_pred eccccc-ccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEcc
Confidence 432210 0111 01111 147889998862 1 12577777743 355443 789999998887 689999
Q ss_pred ccCCCCCCccc----cccccCCcc-c--EEEec--ccCCC---c--cce-eeEEeCHHHHhhccCCCCcCCCCChHHHHH
Q 012368 289 QCGLGRTGYLW----AHEHYGIFP-D--IMTLA--KPLAG---G--LPI-GAALVTEKVASAINYGDHGSTFAGSPLVCN 353 (465)
Q Consensus 289 ~~g~gr~g~~~----~~~~~~~~p-d--i~t~s--K~lg~---G--~~i-G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~ 353 (465)
+.+.-.....+ +.. .+-.+ | ++|-| |.+++ + +-+ |. +-.+.+.+.+. ...|.+.+-+-++
T Consensus 333 wgah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-vd~~~~n~a~~---m~~STSPsY~l~A 407 (714)
T PRK15400 333 WVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYM---MHTTTSPHYGIVA 407 (714)
T ss_pred chhhhccCcccCCcChhh-cCCCCCCceEEEEchhhcccchhHHhHHHHcCC-CCHHHHHHHHH---HHcCCCcHHHHHH
Confidence 86632222211 111 12111 3 56655 87764 1 111 21 11123333332 2233344544444
Q ss_pred HHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHc-----CCCce--ee--------------ecc-----------
Q 012368 354 AAIAVLDKIS---NPAFLASVSKKGHYFKETLKQKLAR-----NPHVK--DV--------------RGL----------- 398 (465)
Q Consensus 354 aa~a~L~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~--~~--------------~~~----------- 398 (465)
..-.+...++ -..+.++..+....+|+.|.++... +..+. .+ .+.
T Consensus 408 SLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lD 487 (714)
T PRK15400 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD 487 (714)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccC
Confidence 4444444443 2456777888888888888664210 00000 00 000
Q ss_pred ceEEEEEe------------cCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 399 GLIIGIEF------------DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 399 g~~~~i~~------------~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.+=+.+.. ..++..+.+.|.++||.+--.+. ..+-+.++...|+++++.+++.|.++-+
T Consensus 488 P~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~-~~iLfl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 488 PIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGP-YNLLFLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred CceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCC-CeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 00011111 12356788899999999987765 5566667888999999999999987644
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-07 Score=86.47 Aligned_cols=224 Identities=14% Similarity=0.075 Sum_probs=136.3
Q ss_pred CCHHHHHHHHHHHhhcccc----cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHV----SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
-+|++++++.+.+...... ..+....-...+++.++...+.+.+.++|.-+.|+..++.... .+
T Consensus 39 ~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~------------~~ 106 (395)
T COG1921 39 YSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALA------------EG 106 (395)
T ss_pred CCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhc------------cC
Confidence 4588999988887653221 0111112234566666666678889999998888887766444 23
Q ss_pred ceEEEEcC----CcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE-EEcccCCCCCcccCC
Q 012368 191 TEFVSFTN----SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV-FVEPIQGEGGIYSAT 265 (465)
Q Consensus 191 ~~ii~~~~----~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v-i~ep~~~~~G~~~~~ 265 (465)
..+|+.-+ ++|-.....+...|..... +.........+++.+|.++....+ +..++.+-.+.+ +
T Consensus 107 ~EvVis~g~lV~gg~~~v~d~~~~aG~~l~E---------vG~tn~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l-~- 175 (395)
T COG1921 107 KEVVVSRGELVEGGAFRVPDIIRLAGAKLVE---------VGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGML-S- 175 (395)
T ss_pred CeEEEEccccccCCCCChhHHHHHcCCEEEE---------ecccCcCCHHHHHHHhccCCeeEEEEeeccccccccc-c-
Confidence 34444322 3333333333333222111 001111257889999986443333 344444444443 3
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCCCcC
Q 012368 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGDHGS 343 (465)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~~~~ 343 (465)
++++.++|++||+++|+|..-...-+ -..-........+|+++|| |-|+ |.+.|.++|++++++.++......
T Consensus 176 ---~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdKllg-GPqaGii~GkKelI~~lq~~~l~R 250 (395)
T COG1921 176 ---EEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDKLLG-GPQAGIIVGKKELIEKLQSHPLKR 250 (395)
T ss_pred ---HHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecchhcC-CCccceEechHHHHHHHHhhhhhh
Confidence 78899999999999999986422211 1111233345568999998 7675 456899999999999987544444
Q ss_pred CCCChHHHHHHHHHHHHHhcCch
Q 012368 344 TFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 344 t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
.+-......++..++|+.+..++
T Consensus 251 alrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 251 ALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred hhhcCcHhHHHHHHHHHHHcCch
Confidence 45567788899999999876644
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-08 Score=96.91 Aligned_cols=222 Identities=15% Similarity=0.119 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhccccc----CCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 012368 117 ADWIKAVVDQANVLTHVS----NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ 192 (465)
|++.+++.+.+..+..-- .+---..+..+++.+++..+.+..+++|+...|+.+++.... .+.+
T Consensus 20 ~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la------------~~~E 87 (367)
T PF03841_consen 20 EEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELTGAEAALVVNNNAAAVLLALNTLA------------KGKE 87 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------cccc
Confidence 667777777655422110 000001134566677788889999999999999988877554 2445
Q ss_pred EEEEcCCc---ccC--ccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCC-CCcc-cCC
Q 012368 193 FVSFTNSF---HGR--TMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGE-GGIY-SAT 265 (465)
Q Consensus 193 ii~~~~~y---hg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~-~G~~-~~~ 265 (465)
||+..+.- -|. ....+..+|..... +.......+++.+++|.+++.+++.+-+.|.. -|.. .++
T Consensus 88 vIvsRGelVeiGgsFRip~vm~~sGa~lvE---------VGttN~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~ 158 (367)
T PF03841_consen 88 VIVSRGELVEIGGSFRIPDVMRQSGARLVE---------VGTTNRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEVS 158 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc---------ccccccccccccccccccccccccccccccccccccccccc
Confidence 55543321 111 11222222211111 11111124678899998654444566654443 2211 112
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccc------cCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhcc
Q 012368 266 KEFLQFLRDACDDAGALLVFDEVQ------CGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAIN 337 (465)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~------~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~ 337 (465)
++++.+++++|++++|+|-.- +.+|-.++.-..+......|+++|| |-+||. ..|.+++++++++.++
T Consensus 159 ---~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP-QaGiI~Gkk~lI~~lk 234 (367)
T PF03841_consen 159 ---LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP-QAGIIVGKKELIEKLK 234 (367)
T ss_dssp -----HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS--S-EEEEEEHHHHHHHH
T ss_pred ---HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC-CeEEEEeCHHHHHHHh
Confidence 899999999999999999643 1122222333334445568999998 777764 4699999999999887
Q ss_pred CCCCcCCCCChHHHHHHHHHHHHHhc
Q 012368 338 YGDHGSTFAGSPLVCNAAIAVLDKIS 363 (465)
Q Consensus 338 ~~~~~~t~~~~~~~~~aa~a~L~~~~ 363 (465)
.......+-..-+.+++..++|+.+.
T Consensus 235 ~~pl~RalrvdK~tla~L~atL~~Y~ 260 (367)
T PF03841_consen 235 KHPLGRALRVDKLTLAALEATLRLYL 260 (367)
T ss_dssp HHHHTTT-B--HHHHHHHHHHHHH--
T ss_pred hCCCcceEeeCHHHHHHHHHHHHHHH
Confidence 43334445567788888888888754
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-07 Score=86.57 Aligned_cols=278 Identities=15% Similarity=0.112 Sum_probs=146.1
Q ss_pred HHHHHHHHHhhc---C-----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 142 QIELAKRLVACS---F-----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 142 ~~~la~~l~~~~---~-----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
..+|++.|.+++ | ...|+|.+|+++-+.+|+-++..... . ..+.-+|+...|.|..+....--...
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~--~---~~~p~~VVa~aPYY~~Y~~qt~~f~s- 118 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNAS--P---SSSPASVVAAAPYYSSYPEQTDFFDS- 118 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT---T---TSSSEEEEE-SS--CHHHHHCCCT-B-
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCC--C---CCCCceeEecCCCccchHHHHHhccc-
Confidence 455666655544 4 34799999999998888876543210 0 01456899999998655432211100
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
....+. .|.......=.+....=+++.|+||.|...- .+++.-+..+|.|-+|----
T Consensus 119 -----------~~y~w~--Gda~~~~~~~~~~~~IElVTSPNNPDG~lr~----------~V~~g~~~k~I~D~AYYWPh 175 (363)
T PF04864_consen 119 -----------RLYKWA--GDASNFKNSDNPSPYIELVTSPNNPDGQLRE----------AVLNGSSGKVIHDLAYYWPH 175 (363)
T ss_dssp -----------TTEEEE--EECCCGTT-S-CCGEEEEEESS-TTT----------------SSTTTEEEEEEE-TT-STT
T ss_pred -----------cCcccc--ccHHhhccCCCCCCeEEEEeCCCCCcccccc----------hhcCCCCcceeeeeeeeccc
Confidence 001110 0111111000123456678889888774332 13455566789999875221
Q ss_pred CCCccccccccCCcccEE--EecccCC-CccceeeEEeCH-HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC-----
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLA-GGLPIGAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN----- 364 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~----- 364 (465)
++.... ...-||+ |+||.-| +|-|+||.+.++ ++.+.+......+|.+.+-=+|.-++..|+.+.+
T Consensus 176 yTpI~~-----~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~ 250 (363)
T PF04864_consen 176 YTPITA-----PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTE 250 (363)
T ss_dssp TS---S------B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHH
T ss_pred ccccCC-----CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCC
Confidence 221111 1234665 7899888 699999999975 5666655444456777777778777777776421
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHcCCCc--------------eeeeccceEEEEEecCC-hHHHHHHHHHCCceEee
Q 012368 365 ---PAFLASVSKKGHYFKETLKQKLARNPHV--------------KDVRGLGLIIGIEFDVS-ATPVVDACRDSGLLVLT 426 (465)
Q Consensus 365 ---~~~~~~~~~~~~~l~~~l~~~~~~~~~~--------------~~~~~~g~~~~i~~~~~-~~~~~~~l~~~Gv~v~~ 426 (465)
.++.+--.+..+..-+.|++++..-..+ ......+.|.|+.+..+ .......|++.||+.+.
T Consensus 251 ~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~~I~tr~ 330 (363)
T PF04864_consen 251 KGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREAKIITRS 330 (363)
T ss_dssp TTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCTTEEEEE
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHhCCcccCC
Confidence 1344433333333334455554332211 12335578899998533 34456667788888876
Q ss_pred cC----CCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 427 AG----KGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 427 ~~----~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+. ...++|+ ++..++++.+.++++|..
T Consensus 331 G~~fga~~ryVRl--Sml~~~d~Fd~l~~rL~~ 361 (363)
T PF04864_consen 331 GVLFGADSRYVRL--SMLKRDDDFDQLLERLSK 361 (363)
T ss_dssp GGGGTS-TTEEEE--ESSS-HHHHHHHHHHHHC
T ss_pred CCccCCCCCeEEE--eccCCHHHHHHHHHHHHh
Confidence 53 2478988 567899999999999974
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-05 Score=73.39 Aligned_cols=341 Identities=16% Similarity=0.184 Sum_probs=187.8
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~ 176 (465)
+.-+||+....++... ...-..|+..-=+ .+..+.....|++.+.+.+|.+.++.+.-|-.|-...+..++
T Consensus 45 edv~IDLLTDSGTgam---s~~qwaamm~GDE------AYagsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~i 115 (471)
T COG3033 45 EDVFIDLLTDSGTGAM---TDKQWAAMMRGDE------AYAGSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILI 115 (471)
T ss_pred cceEEEeeccCCcccc---cHHHHHHHhccch------hhcccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHh
Confidence 3568998877664322 2223333332111 112334467899999999999999999888777666666555
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCc-eEeeCC---CHHHHHhhcC---CCCeEE
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV-NFVEYG---NIEATRKLIQ---PGKTAA 249 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---d~~~le~~l~---~~~~a~ 249 (465)
... +..++.+.+++++.|.-.+.+-....+... +..+.+...+. .-.||. |++.|+++|+ .+.+..
T Consensus 116 k~~------~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~-~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~ 188 (471)
T COG3033 116 KKG------EQEPGSKMVAFSNYHFDTTRGHIQINGATP-RNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPY 188 (471)
T ss_pred hhc------cccCCccccccccceecchhHHHHhcCCcc-ccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcE
Confidence 311 112567888888877766655544333211 11111111111 123332 8999999997 334555
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----CCCCCc----cccccc-----cCCcccEEEec-c
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----LGRTGY----LWAHEH-----YGIFPDIMTLA-K 315 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g----~gr~g~----~~~~~~-----~~~~pdi~t~s-K 315 (465)
|++.-.+++.|.-+-+-+-+++++++|++||+.++.|-+-.- |-..-. .|+... +. ..|-.++| |
T Consensus 189 I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~s-YaD~~~mS~K 267 (471)
T COG3033 189 IVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYS-YADGCTMSAK 267 (471)
T ss_pred EEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHh-hhhhheeecc
Confidence 544443444444566889999999999999999999986320 111100 011110 00 23555665 3
Q ss_pred cCCCccce-eeEEeCHH----HHhhccCC----CCcCCCCC-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 012368 316 PLAGGLPI-GAALVTEK----VASAINYG----DHGSTFAG-SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 316 ~lg~G~~i-G~v~~~~~----i~~~~~~~----~~~~t~~~-~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~ 385 (465)
.=+ =..+ |++..+.+ +....+.. ....||++ ..-.+.|....|...-+.+++++-.+..++|.+.|++.
T Consensus 268 KD~-lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~ 346 (471)
T COG3033 268 KDG-LVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA 346 (471)
T ss_pred ccc-eeccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 211 1233 45555544 33333221 12234432 22344444455655445666676667777888888775
Q ss_pred HHcCCCceeeeccceEEEEEe----c------CChHHHHHHHH-HCCceEeecC-------C---------CCEEEEecC
Q 012368 386 LARNPHVKDVRGLGLIIGIEF----D------VSATPVVDACR-DSGLLVLTAG-------K---------GNVVRLVPP 438 (465)
Q Consensus 386 ~~~~~~~~~~~~~g~~~~i~~----~------~~~~~~~~~l~-~~Gv~v~~~~-------~---------~~~lRi~~~ 438 (465)
..|++..+.|.+. .++. + -++..|+-+|. +.||-....| . -..+|+.+|
T Consensus 347 --GVpi~~paGGHav--fvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltip 422 (471)
T COG3033 347 --GVPIVQPAGGHAV--FVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIP 422 (471)
T ss_pred --CCeeEecCCCceE--EeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEecc
Confidence 4443333333333 3332 1 23556666665 4566554221 0 146899887
Q ss_pred C-CCcHHHHHHHHHHHHHHHHH
Q 012368 439 L-IISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 439 ~-~~t~e~i~~~l~~l~~~l~~ 459 (465)
- +-|.+++|..++.+++..++
T Consensus 423 RrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 423 RRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred ccccchhHHHHHHHHHHHHHhc
Confidence 4 45889999999999887764
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-05 Score=77.27 Aligned_cols=275 Identities=19% Similarity=0.207 Sum_probs=124.0
Q ss_pred HHHHHHHHHhhcCCCeE--EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 142 QIELAKRLVACSFADRV--FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~~~~~v--~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
.-++-..++++.|.+-+ -+-.+++.+-+.++ ++...++ ..+++|++.+.. |+.+..++....
T Consensus 112 lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~-ma~r~~~-------~~~~~vlv~~~~-hP~~~~v~~t~a------- 175 (429)
T PF02347_consen 112 LFEYQSMICELTGMDVANASLYDGATAAAEAML-MAVRATK-------RKRNKVLVPESL-HPQTRAVLRTYA------- 175 (429)
T ss_dssp HHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHH-HHHHHHT-------T---EEEEETTS--CHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhhCCCccCCCCCChhHHHHHHHH-HHHHhcc-------cCCcEEEEcCCc-ChhhHHHHHHhh-------
Confidence 44677788888887754 55556665556543 3433432 023567766654 555544332111
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
.+..-++..+|..+-... +++++++|++.-.+. -|.+-. +++|.++++++|+++|+ -+ ..--.+-.-
T Consensus 176 -~~~g~~iv~~~~~~~~~~----d~~~~a~v~vq~Pn~-~G~~ed----~~~i~~~~h~~gal~~~-~a--d~~aL~~l~ 242 (429)
T PF02347_consen 176 -APLGIEIVEVPLDEDGTT----DDDDTAAVMVQNPNT-FGVFED----IKEIADIAHAAGALVIV-GA--DPNALGGLK 242 (429)
T ss_dssp -CHCCEEEEEE-BBTTCSB-----STTEEEEEEESS-T-TSB--T----HHHHHHHHHHTT-EEEE-CG--GCCGCCTC-
T ss_pred -hhCCeEEEEecccccCCc----cccCeEEEEeecCCC-CceEee----HHHHHHHHHHcCCEEEE-ec--CHHHHhCcC
Confidence 111223334443221110 045788887765443 455432 99999999999999987 22 111111111
Q ss_pred cccccCCcccEEE-ecccCC-----CccceeeEEeCHHHHhhccCC----------C------------------CcCCC
Q 012368 300 AHEHYGIFPDIMT-LAKPLA-----GGLPIGAALVTEKVASAINYG----------D------------------HGSTF 345 (465)
Q Consensus 300 ~~~~~~~~pdi~t-~sK~lg-----~G~~iG~v~~~~~i~~~~~~~----------~------------------~~~t~ 345 (465)
.-..+| .||++ .+|.|| ||--.|++.++++++..+-.. . -.+.+
T Consensus 243 ~Pge~G--ADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNI 320 (429)
T PF02347_consen 243 SPGEYG--ADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNI 320 (429)
T ss_dssp -GGGGT---SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT--
T ss_pred ChhhcC--ccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhh
Confidence 111223 57774 356665 246778888888877665211 0 11223
Q ss_pred CChHHHH-HHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEE-ecCC--hHHHHHHHH
Q 012368 346 AGSPLVC-NAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE-FDVS--ATPVVDACR 418 (465)
Q Consensus 346 ~~~~~~~-~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~-~~~~--~~~~~~~l~ 418 (465)
+.|..-+ .++...+..+..+ ++.++...+..++.++|.+. -..+ +...-.+-.+. .... ..++.+++.
T Consensus 321 ctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~~----~~~~~f~e~v~~~~~~~~~~~l~~~~~ 395 (429)
T PF02347_consen 321 CTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGLP----FDNPFFFEFVVVFSKDKEVEELLKRGI 395 (429)
T ss_dssp -SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBEC----SSSSSBSSEEEEESS-HHHHHHHHTT-
T ss_pred hhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc----cCCCCceeeeeecCCcHHHHHHHHHHH
Confidence 3343332 2333334444343 34455556666666666553 1111 11111111111 1122 122444444
Q ss_pred HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 419 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 419 ~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
..|+....... +.+-+++.=.+|++|||++++.|
T Consensus 396 ~~gl~~~~~~~-~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 396 EGGLNLRYPDD-GALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp ---EEEGGG-S-SEEEEE--TT--HHHHHHHHH--
T ss_pred hcCCCccccCC-CeEEEEccCCCCHHHHHHHHhcC
Confidence 45644433333 57888888889999999999865
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.2e-05 Score=77.62 Aligned_cols=158 Identities=22% Similarity=0.214 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc-CCCCcCC
Q 012368 141 PQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRS 218 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~ 218 (465)
...+..+..++.++.+ ..+.+||.|.||..++.++.. +||+|++..+ .|-+....+.++ ..+.|..
T Consensus 71 ~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~-----------~GD~VLvdRN-~HKSi~~glilaGa~Pvyl~ 138 (557)
T COG1982 71 PIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLT-----------PGDKVLVDRN-CHKSIHHGLILAGATPVYLE 138 (557)
T ss_pred cHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcC-----------CCCEEEecCC-ccHHHHHHHHHcCCceEEec
Confidence 3566667777788866 567778888888888876662 5776666555 466665555444 3444443
Q ss_pred CCCCCCCCceEeeCCCHHHHHhhcCCCC---eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-CCC
Q 012368 219 PFEPVMPGVNFVEYGNIEATRKLIQPGK---TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-LGR 294 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~d~~~le~~l~~~~---~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~gr 294 (465)
+... +...++---+.+.+++.+..+. ..+|+.+|.. .|+... +++|.+.+.++++++.+||.+-- ++.
T Consensus 139 p~~n--p~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah~~~~~~ 210 (557)
T COG1982 139 PSRN--PLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAHPAHFDF 210 (557)
T ss_pred CCCC--ccccccCCCCHHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcCcccccc
Confidence 2211 1111111126788887765322 4567766643 354443 88999999999999999998642 222
Q ss_pred CCccccccccCCcccEEEec--ccCCC
Q 012368 295 TGYLWAHEHYGIFPDIMTLA--KPLAG 319 (465)
Q Consensus 295 ~g~~~~~~~~~~~pdi~t~s--K~lg~ 319 (465)
.+.... .......|++|-| |.+++
T Consensus 211 ~~~l~~-~~~~~~~~~~tqS~HK~l~a 236 (557)
T COG1982 211 SPMLPE-SALNGGADFVTQSTHKLLAA 236 (557)
T ss_pred cccCcc-hhhhcCceEEEechhhhhhh
Confidence 222211 1112345777766 66654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-05 Score=82.26 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHH
Q 012368 139 SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKF 178 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~ 178 (465)
+..+.++.++|++.+| ...-.||+|||+||..|+.+||..
T Consensus 122 t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~ 163 (608)
T TIGR03811 122 SQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNI 163 (608)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHh
Confidence 3447888899999988 335679999999999999999964
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-05 Score=74.67 Aligned_cols=204 Identities=17% Similarity=0.137 Sum_probs=114.0
Q ss_pred CCHHHHHHHHHH-Hhhc-ccccC--CCCCHHHHHHHHHHHhhcCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012368 115 GDADWIKAVVDQ-ANVL-THVSN--MYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~-~~~~-~~~~~--~~~~~~~~~la~~l~~~~~~~~v~~---~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
|..+|.+|+++. +... -.+++ +|.+..++.|.+-.++.++.|..++ ..|||.|+..++...+.
T Consensus 25 Nq~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~Lr---------- 94 (403)
T PF06838_consen 25 NQLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLR---------- 94 (403)
T ss_dssp HHHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCC----------
Confidence 445677777663 2211 11112 2345558899999999999776554 35899999999987763
Q ss_pred CCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
|+|+++...+.=.-....++.+.+... ..+....-....++. -|.+.+++++++ ++++|++--.-+-..--
T Consensus 95 -pGD~ll~~tG~PYDTL~~VIG~~g~~~--GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~-~tk~v~IQRSrGYs~R~ 170 (403)
T PF06838_consen 95 -PGDELLSITGKPYDTLEEVIGIRGNGP--GSLKEFGIKYREVPLTEDGTIDWEAIKKALKP-NTKMVLIQRSRGYSWRP 170 (403)
T ss_dssp -TT-EEEESSSS--CCHHHHHTSSSSSS--SSTGGGT-EEEE--B-TTSSB-HHHHHHHHHT-TEEEEEEE-S-TTSSS-
T ss_pred -CCCeEEEcCCCchhhHHHHhCCCCCCC--CChHHhCceeEEEeecCCCCcCHHHHHHhhcc-CceEEEEecCCCCCCCC
Confidence 789988876543223233333322210 000000011111221 179999999984 67888876554433222
Q ss_pred cCCHHHHHHHHHHHHHh--CCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCcc--ceeeEEeCHHHHhhc
Q 012368 263 SATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGL--PIGAALVTEKVASAI 336 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~--~iG~v~~~~~i~~~~ 336 (465)
..+-+.++++.+++++. ++++.+|..|..|--. .+-..+..|++. +=|-.|||+ -.||+++++++++..
T Consensus 171 sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~-----~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~ 245 (403)
T PF06838_consen 171 SLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET-----QEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERA 245 (403)
T ss_dssp ---HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS-----S-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc-----cCccccchhheeccceeCCCCCccCcCCEEechHHHHHHH
Confidence 34556777888777765 7899999999877322 233345578874 559999883 458999999999876
Q ss_pred c
Q 012368 337 N 337 (465)
Q Consensus 337 ~ 337 (465)
.
T Consensus 246 a 246 (403)
T PF06838_consen 246 A 246 (403)
T ss_dssp H
T ss_pred H
Confidence 3
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.8e-05 Score=70.70 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=116.1
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC-cccEEEec--ccCCC-ccc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAG-GLP 322 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~-G~~ 322 (465)
.+-|...++....|+.++... .+.. +.++|+|-.-.-|+| ..++ +-|++.+| |-+|+ |
T Consensus 145 ~ayv~~~~NeTi~Gv~v~~~p------~~~~--~~~~v~D~SS~ilsr--------~iDvsk~dviyagaQKnlGpaG-- 206 (365)
T COG1932 145 DAYVHFCWNETISGVEVPELP------DIGS--DGLLVADASSAILSR--------PIDVSKYDVIYAGAQKNLGPAG-- 206 (365)
T ss_pred ccEEEEecCCcccceEccCCC------CCCC--CceEEEecccHHhcC--------CCChhHcceEEEehhhccCccc--
Confidence 444666677666777765321 1111 278888854332221 1122 35788887 99986 7
Q ss_pred eeeEEeCHHHHhhccCC------------CCcCCCCChHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcC
Q 012368 323 IGAALVTEKVASAINYG------------DHGSTFAGSPL-VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~------------~~~~t~~~~~~-~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
++.++.++++++++... ..+++|+.+|. +......+++.+...+=++.+.++.+.-.+.|.+.+++.
T Consensus 207 ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s 286 (365)
T COG1932 207 LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS 286 (365)
T ss_pred eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999999999887542 24567776654 444555667766554434444444444444445544444
Q ss_pred CCce---eeeccceE-EEEEec--CChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 390 PHVK---DVRGLGLI-IGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 390 ~~~~---~~~~~g~~-~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+... ....+..+ +.+.+. .-...|...+.++|+....+.. .+-+|+++--+++.++++.+++-++.+.++
T Consensus 287 ~fy~~~v~~~~RS~mnV~f~~~~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 287 DFYRNLVAKANRSRMNVTFTLVDAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred CccccccchhhccceeEEEEcCcHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 4111 11222332 223331 2345688888888887765543 233999998899999999999999887654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.3e-05 Score=75.14 Aligned_cols=296 Identities=19% Similarity=0.236 Sum_probs=174.8
Q ss_pred HHHHHHHHHhhcCCCeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 142 QIELAKRLVACSFADRVFFS-NTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 142 ~~~la~~l~~~~~~~~v~~~-~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
..+|.+.|++..|.|.+.|- |||.+.-..-++..|.|...+++. ...|....-+-||.......+.+-.... .
T Consensus 584 f~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~----hRnvClIPvSAHGTNPASA~Magmkvvp--V 657 (1001)
T KOG2040|consen 584 FTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEG----HRNVCLIPVSAHGTNPASAAMAGMKVVP--V 657 (1001)
T ss_pred HHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCC----cceeEEEeecccCCChhhHHhcCCEEEE--e
Confidence 56788999999997776654 789988888899999998766653 3456666677888876554443322111 0
Q ss_pred CCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc----ccCCCC
Q 012368 221 EPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV----QCGLGR 294 (465)
Q Consensus 221 ~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv----~~g~gr 294 (465)
.....+. -|+.+|+..-+ .++.+++++. .+++.|+.-+. ++.+.++.++||.-+..|-+ |-|+.+
T Consensus 658 ~~~~~G~-----id~~dLk~kaekh~~~Laa~MvT-YPST~GvfE~~---i~d~cd~iHehGGQVYlDGANMNAqVGlc~ 728 (1001)
T KOG2040|consen 658 GCDANGN-----IDMVDLKAKAEKHKDNLAALMVT-YPSTHGVFEEG---IDDICDIIHEHGGQVYLDGANMNAQVGLCR 728 (1001)
T ss_pred eccCCCC-----ccHHHHHHHHHHhhhhhheeEEe-ccccccccccc---HHHHHHHHHhcCCEEEecCCCccceecccC
Confidence 0000111 17788877766 3456666553 34556766443 88999999999999999986 556655
Q ss_pred CCcccc-ccccCCcccEEEecccCCC-ccceeeEEeCHHHHhhccCC---------C--CcCCCC----ChHHHHHHHHH
Q 012368 295 TGYLWA-HEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAINYG---------D--HGSTFA----GSPLVCNAAIA 357 (465)
Q Consensus 295 ~g~~~~-~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~~~~---------~--~~~t~~----~~~~~~~aa~a 357 (465)
.|..++ ..+.++. -||.=..|| |-.+|-+.+++.+...+-.- . -.++.+ ++........+
T Consensus 729 pGd~GaDV~HLNLH---KTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwa 805 (1001)
T KOG2040|consen 729 PGDIGADVCHLNLH---KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWA 805 (1001)
T ss_pred Cccccccceeeccc---ceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHH
Confidence 553221 1111111 133333454 45556666666665544210 0 011222 23333444556
Q ss_pred HHHHhcCchHH---HHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe--c---------CChHHHHHHHHHCCce
Q 012368 358 VLDKISNPAFL---ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--D---------VSATPVVDACRDSGLL 423 (465)
Q Consensus 358 ~L~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~--~---------~~~~~~~~~l~~~Gv~ 423 (465)
.++.+...++. +-..-+..++.++|+. .++++ .....| ++.-+| + .++.+++++|.+.|+.
T Consensus 806 YikmMG~~GL~~as~~AiLNaNYMakRLe~---hYkil-~~~~~~-~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFH 880 (1001)
T KOG2040|consen 806 YIKMMGSGGLKDASKIAILNANYMAKRLES---HYKIL-FRGENG-LVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFH 880 (1001)
T ss_pred HHHHhcccccchhhHHHhhhhHHHHHHHhh---cccee-EecCCc-ceeeeeeeechhhccccCCcHHHHHHHHHhccCC
Confidence 67766544332 2233355667666655 33321 222223 333333 1 3567899999999987
Q ss_pred EeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 424 VLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 424 v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
...... .+.+.|-|.-.-+.+|+|++++++-.+-.++
T Consensus 881 aPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI 919 (1001)
T KOG2040|consen 881 APTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEI 919 (1001)
T ss_pred CCccccccCCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence 543221 3678888877778999999999987665443
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-05 Score=74.16 Aligned_cols=216 Identities=14% Similarity=0.091 Sum_probs=113.1
Q ss_pred CHHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccc---cccCC
Q 012368 234 NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAH---EHYGI 306 (465)
Q Consensus 234 d~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~---~~~~~ 306 (465)
|++++|++++ .+.+.+|+..+ ....+- -++.+++|.++|++||+..|+.-+|+ +- ... .-.. ...|.
T Consensus 140 d~~~ie~~i~~~G~~~iLcvlttt-scfapr---~~D~i~~IakiC~~~~IPhlvNnAYg-vQ-~~~~~~~i~~a~~~GR 213 (389)
T PF05889_consen 140 DLEAIEAKIEELGADNILCVLTTT-SCFAPR---LPDDIEEIAKICKEYDIPHLVNNAYG-VQ-SSKCMHLIQQAWRVGR 213 (389)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEEES-STTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT--HHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHhCCCCeEEEEEec-CccCCC---CCccHHHHHHHHHHcCCceEEccchh-hh-HHHHHHHHHHHHhcCC
Confidence 5788888876 23344554443 333222 22459999999999999999999985 30 000 0000 01233
Q ss_pred c-ccEEEecccCCCccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHH
Q 012368 307 F-PDIMTLAKPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKET 381 (465)
Q Consensus 307 ~-pdi~t~sK~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~ 381 (465)
. .++-+..|-|--|..-+-+.+ .+..++.+...+-+-.+..+.+-. ..+|..+.. ..++....+...+++++
T Consensus 214 vda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~---~itLl~LG~~g~~~ll~~r~~~f~~l~er 290 (389)
T PF05889_consen 214 VDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGRASASPSLDL---FITLLSLGCTGYGALLKERKASFPYLKER 290 (389)
T ss_dssp CSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2 223355565531111122222 456666665332222222222222 222222222 34566677778888999
Q ss_pred HHHHHHcCC-CceeeeccceEEEEEec-------CChHHHHHHHHHCCce----EeecCC----------CCEEEEecCC
Q 012368 382 LKQKLARNP-HVKDVRGLGLIIGIEFD-------VSATPVVDACRDSGLL----VLTAGK----------GNVVRLVPPL 439 (465)
Q Consensus 382 l~~~~~~~~-~~~~~~~~g~~~~i~~~-------~~~~~~~~~l~~~Gv~----v~~~~~----------~~~lRi~~~~ 439 (465)
|+++.++++ .+...+.....+.++++ .+...|...|..+||. +.+.+. -.++-+.-.+
T Consensus 291 l~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~Asai 370 (389)
T PF05889_consen 291 LKKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAI 370 (389)
T ss_dssp HHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-T
T ss_pred HHHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHh
Confidence 998887776 22333344455566663 1235677888888664 222211 1456666678
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 012368 440 IISEQELDQAVEILCKTLP 458 (465)
Q Consensus 440 ~~t~e~i~~~l~~l~~~l~ 458 (465)
.+++||+|.++++|+++++
T Consensus 371 G~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 371 GMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp T--HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 8899999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-05 Score=71.31 Aligned_cols=276 Identities=14% Similarity=0.185 Sum_probs=145.6
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHH
Q 012368 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239 (465)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 239 (465)
-+-||+.|+..+-..+..+. .+..|.+..|++..+.......+-......+++.. +... -|++.+-
T Consensus 104 QslsGTGAl~~~A~Fl~~~~---------~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~--~~k~---~d~e~~L 169 (410)
T KOG1412|consen 104 QSLSGTGALRIAADFLATFY---------NKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDA--ENKC---VDLEGFL 169 (410)
T ss_pred eeccccchhhhhHHHHHHhc---------ccceeEecCCchhHHHHHHHHcCCceeeeeeeecC--CCce---ecHHHHH
Confidence 45578888887776555443 36678888888866554333222111111111111 1111 1666666
Q ss_pred hhcCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc----ccccccc---CCcccEE
Q 012368 240 KLIQPG-KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----LWAHEHY---GIFPDIM 311 (465)
Q Consensus 240 ~~l~~~-~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~----~~~~~~~---~~~pdi~ 311 (465)
..|+.. ....+++-.-..|+..+-|++|.+.+|++..++.+.+-.+|-+|.|| -+|. .|+..++ |. +-++
T Consensus 170 sdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGf-ASGD~~~DawAiR~fV~~g~-e~fv 247 (410)
T KOG1412|consen 170 SDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGF-ASGDLDADAWAIRYFVEQGF-ELFV 247 (410)
T ss_pred HHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhccc-ccCCccccHHHHHHHHhcCC-eEEE
Confidence 666522 22333333222233336789999999999999999999999999999 3553 3444332 32 1222
Q ss_pred --EecccCCC-ccceeeEE--e-CHHHHhhccCC---CCcCCCCChHHHH--HHHHHHHHHhc-CchHH-------HHHH
Q 012368 312 --TLAKPLAG-GLPIGAAL--V-TEKVASAINYG---DHGSTFAGSPLVC--NAAIAVLDKIS-NPAFL-------ASVS 372 (465)
Q Consensus 312 --t~sK~lg~-G~~iG~v~--~-~~~i~~~~~~~---~~~~t~~~~~~~~--~aa~a~L~~~~-~~~~~-------~~~~ 372 (465)
+|+|-+|- +-|+|-+. + ++.++..+... ....+++ ||++. ......|..-+ .+++. .++.
T Consensus 248 ~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~S-NPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~ 326 (410)
T KOG1412|consen 248 CQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWS-NPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIK 326 (410)
T ss_pred EhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccC-CCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 68999985 77887542 2 34444433211 1223343 33333 33334443211 12222 2333
Q ss_pred HHHHHHHHHHHHHHHcCC-Ccee-eeccceEEEEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHH
Q 012368 373 KKGHYFKETLKQKLARNP-HVKD-VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 373 ~~~~~l~~~l~~~~~~~~-~~~~-~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~ 449 (465)
+++..|++.|..+ +-| .... ++..|+| .+. .-...-.+.|. .+.|++.+.| ||+++ ..+...++..
T Consensus 327 ~MR~aLrd~L~aL--~TPGtWDHI~~QiGMF-SyT--GLtp~qV~~li~~h~vyLl~~G-----RInis-GLN~~NveyV 395 (410)
T KOG1412|consen 327 KMRTALRDHLVAL--KTPGTWDHITQQIGMF-SYT--GLTPAQVDHLIENHKVYLLSDG-----RINIS-GLNMKNVEYV 395 (410)
T ss_pred HHHHHHHHHHHhc--CCCCcHHHHHhhccce-eec--CCCHHHHHHHHHhceEEEecCC-----cEeee-ccccccHHHH
Confidence 4444444444433 222 1111 2333433 221 22233455565 5678887765 55554 3355678889
Q ss_pred HHHHHHHHHHhhhc
Q 012368 450 VEILCKTLPVLDSN 463 (465)
Q Consensus 450 l~~l~~~l~~~~~~ 463 (465)
.++|+++++.+..+
T Consensus 396 AkAIde~Vr~~~~~ 409 (410)
T KOG1412|consen 396 AKAIDETVRAIKSN 409 (410)
T ss_pred HHHHHHHHHhhccC
Confidence 99999988876543
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0012 Score=64.79 Aligned_cols=328 Identities=16% Similarity=0.113 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHhhcccc-cCCCC--CHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 012368 116 DADWIKAVVDQANVLTHV-SNMYY--SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189 (465)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~-~~~~~--~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~ 189 (465)
+|+..+-+.+...+.... ...++ .....+....++..++ .+--.-|.||||+...+.+..+.......+. .
T Consensus 93 ~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I---~ 169 (491)
T KOG1383|consen 93 EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGI---D 169 (491)
T ss_pred CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCC---C
Confidence 556666666665543111 11122 2234556666666664 2223567889999888887665443321111 1
Q ss_pred CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 012368 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 190 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
+..|++... -|....-+...-+-.. .-.++.++...+ |+..+.+.++...+.+|..-|..+. |.+ +..
T Consensus 170 ~p~iv~~~~-v~~a~eK~a~yf~v~l---~~V~~~~~~~~~---D~~k~~~~i~eNti~lv~~~~~~p~-G~~----e~v 237 (491)
T KOG1383|consen 170 KPNIVTPQN-VHAAFEKAARYFEVEL---REVPLDEGDYRV---DPGKVVRMIDENTIMLVGSLPNFPT-GEI----EDV 237 (491)
T ss_pred CccccchHH-HHHHHHHHHhhEEEEE---EeeeccccceEe---cHHHHHHHhccceEEEEEEcCCCCc-cch----hhH
Confidence 233443322 1221111111000000 001222222111 7899999998654444444455554 444 348
Q ss_pred HHHHHHHHH-hCCEEEEeccccCCCCC-CccccccccCC----cccEEEecccCCC-ccceeeEEeC-HHH-Hhhcc--C
Q 012368 270 QFLRDACDD-AGALLVFDEVQCGLGRT-GYLWAHEHYGI----FPDIMTLAKPLAG-GLPIGAALVT-EKV-ASAIN--Y 338 (465)
Q Consensus 270 ~~l~~l~~~-~g~llI~DEv~~g~gr~-g~~~~~~~~~~----~pdi~t~sK~lg~-G~~iG~v~~~-~~i-~~~~~--~ 338 (465)
++|.++..+ +++.+.+|-.-.||--. +. .....++. ++-+.+-+--+|- --.+||++-+ +++ .+.+. .
T Consensus 238 e~l~~l~~e~w~ipiHvDa~~GgFi~p~~~-~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~ 316 (491)
T KOG1383|consen 238 EKLADLLLEIWDIPIHVDACLGGFINPAGY-LNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHT 316 (491)
T ss_pred HHHHHHHHHHhCCceeecccCccccccccc-cCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEec
Confidence 999999999 99999999988777322 21 11223333 1223333322321 1234666644 332 22221 0
Q ss_pred C-----CCcCCCCChH--HHHHHHHHHHHHhcCchHH---HHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-
Q 012368 339 G-----DHGSTFAGSP--LVCNAAIAVLDKISNPAFL---ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD- 407 (465)
Q Consensus 339 ~-----~~~~t~~~~~--~~~~aa~a~L~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~- 407 (465)
. .-+.|.+++- .-.++..+++=.+..+++. +++.+....+++.++++ +.+ .+-+...+-.+-++
T Consensus 317 ~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i----~~i-~i~gkp~vs~~~~~s 391 (491)
T KOG1383|consen 317 DWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENI----KGI-KIVGKPLVSFILFGS 391 (491)
T ss_pred cccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcc----ccc-eecCCCcEEEEEccC
Confidence 1 1223333332 2223344444444455544 44555667777777663 211 12233333333332
Q ss_pred --CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHH-HHHHHHHHHHHHHHhhhcC
Q 012368 408 --VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQE-LDQAVEILCKTLPVLDSNS 464 (465)
Q Consensus 408 --~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~-i~~~l~~l~~~l~~~~~~~ 464 (465)
.+--++.+.|.+.|-.+..-..+..+.+++...+..++ .++++.-|++++.+++.++
T Consensus 392 ~~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p 451 (491)
T KOG1383|consen 392 NDVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKSLP 451 (491)
T ss_pred CccchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCC
Confidence 34457888899999877543323345555444455544 6889999999999988765
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0056 Score=66.54 Aligned_cols=302 Identities=13% Similarity=0.127 Sum_probs=155.0
Q ss_pred cCCCCCHHHH-HHHHHHHhhcccccCCCCCHH-------HHHHHHHHHhhcCCC--eEEecCCHHHHHHHHHHHHHHHhh
Q 012368 111 ALGHGDADWI-KAVVDQANVLTHVSNMYYSIP-------QIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 111 ~lGh~~p~v~-~a~~~~~~~~~~~~~~~~~~~-------~~~la~~l~~~~~~~--~v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.++|--|.|+ +.+.+.-+-++. ++.|..+. .-++-..++++.|.+ ..-+..+++.+-+ |+.+++.+++
T Consensus 88 ~y~~~~P~vi~~~i~~~~~~yTa-YTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aE-A~~ma~~~~~ 165 (954)
T PRK12566 88 YHGTVTPTVILRNVLENPGWYTA-YTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAE-AMALAKRVAK 165 (954)
T ss_pred ccCCcCcHHHHHHHHhCchhhhc-CCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHH-HHHHHHHHhh
Confidence 4566445554 666553322222 23343222 234555677777755 4455556665555 4444444442
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCC
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G 260 (465)
.++++|++.+ .-|..+..++..- ..+ .++..+. +++++.+.. ++++|++.-.+ .-|
T Consensus 166 -------~k~~~~~v~~-~~hP~~~~v~~t~--------~~~--~g~~i~~----~~~~~~~~~-~~~~v~vq~P~-~~G 221 (954)
T PRK12566 166 -------SKSNRFFVDE-HCHPQTLSVLRTR--------AEG--FGFELVV----DAVDNLAAH-AVFGALLQYPD-THG 221 (954)
T ss_pred -------cCCCEEEECC-CCCHHHHHHHHHh--------hhc--CCcEEEE----cchhhcCCC-CEEEEEEECCC-Cce
Confidence 0245555554 4455544333211 011 2222221 344555544 57887774322 345
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE-----ecccCC-CccceeeEEeCHHHHh
Q 012368 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT-----LAKPLA-GGLPIGAALVTEKVAS 334 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t-----~sK~lg-~G~~iG~v~~~~~i~~ 334 (465)
.+.. +++|.+++++.|+++|+- +..--.+..-.-. +...||++ ||=.++ ||--.|++.++++++.
T Consensus 222 ~i~d----~~~i~~~~h~~gal~~~~---~d~laL~ll~~Pg--e~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R 292 (954)
T PRK12566 222 EIRD----LRPLIDQLHGQQALACVA---ADLLSLLVLTPPG--ELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKR 292 (954)
T ss_pred EEcc----HHHHHHHHHHcCCEEEEE---eCHHHHhCCCChh--hcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHh
Confidence 5532 889999999999987732 1110011000111 22357763 333444 3455788888888776
Q ss_pred hccCCC----------------------------CcCCCCChHHHHHHHHHHH-HHhcCchH---HHHHHHHHHHHHHHH
Q 012368 335 AINYGD----------------------------HGSTFAGSPLVCNAAIAVL-DKISNPAF---LASVSKKGHYFKETL 382 (465)
Q Consensus 335 ~~~~~~----------------------------~~~t~~~~~~~~~aa~a~L-~~~~~~~~---~~~~~~~~~~l~~~l 382 (465)
.+-... -.+..+.|..-++.+.+.+ -.+..+++ .+++..+..++.+.|
T Consensus 293 ~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l 372 (954)
T PRK12566 293 AMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGL 372 (954)
T ss_pred hCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 653110 0122223322222222222 22233333 334555666666666
Q ss_pred HHHHHcCCCceeeeccceEEEEEe--cCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 383 KQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 383 ~~~~~~~~~~~~~~~~g~~~~i~~--~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
.+. .+.. .. ...|-.+.+ +..+.++.+...++|+.++..+. +.+.+++.-++|.+|++.++..+.
T Consensus 373 ~~~--g~~~---~~-~~fF~~~~v~~~~~~~~~~~~a~~~~~n~r~~~~-~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 373 EAK--GIKR---LN-RHFFDTLTLEVGGAQAAIIESAEAARINLRILGR-GRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred Hhc--CCcc---cc-CCccceEEEEccCCHHHHHHHHHHCCCeeEEeCC-CeEEEEeCCCCCHHHHHHHHHHhc
Confidence 552 2211 11 122322332 22567788899999999987654 678899988999999999999884
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0004 Score=67.22 Aligned_cols=298 Identities=16% Similarity=0.133 Sum_probs=150.7
Q ss_pred HHHHHHHHHhhcC--C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCC-C--CCCCceEEEEcCCcccCccccccccCCCC
Q 012368 142 QIELAKRLVACSF--A-DRVFFSNTGTEANEAAIKFARKFQRHSNPD-S--KEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 142 ~~~la~~l~~~~~--~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~-~--~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
..++-.++.+..| . .+-+|++||+-+|..++.+|+--.- ...+ . ..-++-|+..+..-|-+..-+...-+-.
T Consensus 143 E~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~-Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~g- 220 (510)
T KOG0629|consen 143 EEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNF-PEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLG- 220 (510)
T ss_pred hHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcC-chhhhhhhhcCCcEEEEecccchhhHHHHHHHhccC-
Confidence 3444455555555 2 3678999999999999999873110 0000 0 0012456665555554443322211100
Q ss_pred cCCCCCCCCCCceEeeCC-----CHHHHHhhcCC--CC-eEEEEEcccCCCC--CcccCCHHHHHHHHHHHHHhCCEEEE
Q 012368 216 YRSPFEPVMPGVNFVEYG-----NIEATRKLIQP--GK-TAAVFVEPIQGEG--GIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~--~~-~a~vi~ep~~~~~--G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
...+..++.+ ++++||+.|-. .+ -.-++++..-+++ |..-+ |..|+++|++|+.++++
T Consensus 221 --------td~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWmHv 288 (510)
T KOG0629|consen 221 --------TDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD----LNGIADICEKHKLWMHV 288 (510)
T ss_pred --------CceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc----HHHHHHHHHhcCEEEEe
Confidence 0112223322 57889888751 11 1123344433432 33333 99999999999999999
Q ss_pred eccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeCHHH-HhhccC---------CC-CcCCC-CChHH
Q 012368 286 DEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTEKV-ASAINY---------GD-HGSTF-AGSPL 350 (465)
Q Consensus 286 DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~~i-~~~~~~---------~~-~~~t~-~~~~~ 350 (465)
|.+..|---...-.-....|+ ..|.+|.+ |.+|.+++.++.+.+.+- ++.-.. .. +-.+| .+.-.
T Consensus 289 DAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~ 368 (510)
T KOG0629|consen 289 DAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKA 368 (510)
T ss_pred ecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccch
Confidence 998764101111001112244 35666654 888889999998887653 322211 10 00011 01111
Q ss_pred HHHH-------HHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe---c----------
Q 012368 351 VCNA-------AIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF---D---------- 407 (465)
Q Consensus 351 ~~~a-------a~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~---~---------- 407 (465)
.+-. ..-.++.-.. +...++.-++.+++.++|++.-. +-.+.. +..-+.-+.+ +
T Consensus 369 iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~-~~~l~~--~~pe~~nv~fw~vp~~lR~~~~~~ 445 (510)
T KOG0629|consen 369 IQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG-FEMLFE--LEPEHVNVCFWYVPPSLRGWQENP 445 (510)
T ss_pred hhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccc-ceehhc--CCCceEEEeeccCchHhccCcccc
Confidence 1100 1111111111 34566777788888888876411 111111 1111111111 1
Q ss_pred -------CChHHHHHHHHHCCceEeec---C-CCCEEEEec-CCCCcHHHHHHHHHHHHHH
Q 012368 408 -------VSATPVVDACRDSGLLVLTA---G-KGNVVRLVP-PLIISEQELDQAVEILCKT 456 (465)
Q Consensus 408 -------~~~~~~~~~l~~~Gv~v~~~---~-~~~~lRi~~-~~~~t~e~i~~~l~~l~~~ 456 (465)
.-+..+...+.++|-....- + .++++|+-+ +.+.+.+|+|-+++.|.+.
T Consensus 446 e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 446 ERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL 506 (510)
T ss_pred hhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence 01224566788888665432 2 246677643 3467899999999988764
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00044 Score=65.11 Aligned_cols=213 Identities=18% Similarity=0.187 Sum_probs=108.9
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhh-ccc-ccCCCCCHHHHHHHHHHHhhcC---
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTH-VSNMYYSIPQIELAKRLVACSF--- 154 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~-~~~-~~~~~~~~~~~~la~~l~~~~~--- 154 (465)
-|.-+-=|-|+|- |.+|+.|+ -|.|++|=.+.+.. ..- +......+....++.+|+ +|
T Consensus 51 n~~KiNLgvGaYR-dd~gKp~v--------------L~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa--~G~~s 113 (427)
T KOG1411|consen 51 NPKKINLGVGAYR-DDNGKPYV--------------LPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLA--LGDNS 113 (427)
T ss_pred Ccceeeeccccee-cCCCCeee--------------eHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHh--hcCCc
Confidence 4555555777754 44677664 15566665543331 110 111112222333333333 22
Q ss_pred ----CCeEEe--cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-CcCCCCCCCCCCc
Q 012368 155 ----ADRVFF--SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGV 227 (465)
Q Consensus 155 ----~~~v~~--~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~ 227 (465)
..+|.. +-|||-|+-.+-.....|. +...|.+.+|+|-.+.......+-.. .|+ .+.+ ..
T Consensus 114 ~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~---------~~~~I~ip~PTWgNh~~if~~ag~~~~~yr-Yyd~---~t 180 (427)
T KOG1411|consen 114 PVIKEKRIVTVQTLSGTGALRVGAEFLARFY---------PSRDIYIPDPTWGNHKNIFKDAGLPVKFYR-YYDP---KT 180 (427)
T ss_pred hhhhccceeEEEeccCcchhhHHHHHHHhhc---------cccceeecCCcccccCccccccCcceeeee-eccc---cc
Confidence 234433 3568877766655554444 46679999999844332221111000 010 0011 10
Q ss_pred eEeeCCCHHHHHhhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc----cccc
Q 012368 228 NFVEYGNIEATRKLIQ-PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHE 302 (465)
Q Consensus 228 ~~~~~~d~~~le~~l~-~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~----~~~~ 302 (465)
.-+ |.+.+-+-+. ...-..|++-.--+|+..+-|+.+.+++|+++.++.+.+-++|-+|.|| -.|.. ++..
T Consensus 181 ~gl---d~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGf-aSG~~d~DA~avR 256 (427)
T KOG1411|consen 181 RGL---DFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGF-ASGDLDKDAQAVR 256 (427)
T ss_pred ccc---chHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhccc-ccCCchhhHHHHH
Confidence 000 3333222222 1122344444433333336789999999999999999999999999999 45532 1111
Q ss_pred cc---CCcccE-EEecccCCC-ccceeeE
Q 012368 303 HY---GIFPDI-MTLAKPLAG-GLPIGAA 326 (465)
Q Consensus 303 ~~---~~~pdi-~t~sK~lg~-G~~iG~v 326 (465)
.+ |...-+ -+|+|-+|- |-|+|++
T Consensus 257 ~F~~~g~~~~laQSyAKNMGLYgERvGa~ 285 (427)
T KOG1411|consen 257 LFVEDGHEILLAQSYAKNMGLYGERVGAL 285 (427)
T ss_pred HHHHcCCceEeehhhhhhcchhhhcccee
Confidence 11 221111 268899985 7788876
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.011 Score=58.24 Aligned_cols=222 Identities=17% Similarity=0.151 Sum_probs=110.7
Q ss_pred CHHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC-cc
Q 012368 234 NIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FP 308 (465)
Q Consensus 234 d~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~p 308 (465)
+.+.|+++|. ..-+..+++- ..|++|+. .-+.|.+|..+|+++|++|++|.+|.|-...-+.+-.-.-|+ ..
T Consensus 218 r~~~L~~AIe~D~arGlIPf~v~a-t~GTT~~c--a~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~a 294 (511)
T KOG0628|consen 218 RGDTLRKAIEEDIARGLIPFFVCA-TLGTTSSC--AFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYA 294 (511)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEE-eecCcccc--ccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhh
Confidence 4678888886 2223444444 44555443 345699999999999999999999986311111100000122 12
Q ss_pred cEE--EecccCCCccceeeEE------------eCHHHHhhccCCC-CcCCCCChHHHH----HHHHHHHHHhcCchHHH
Q 012368 309 DIM--TLAKPLAGGLPIGAAL------------VTEKVASAINYGD-HGSTFAGSPLVC----NAAIAVLDKISNPAFLA 369 (465)
Q Consensus 309 di~--t~sK~lg~G~~iG~v~------------~~~~i~~~~~~~~-~~~t~~~~~~~~----~aa~a~L~~~~~~~~~~ 369 (465)
|-. ..+|++---+-.+.+. +.+...+.-.... .-.-...=|++- .-..-.++.+.-+++.+
T Consensus 295 DSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~ 374 (511)
T KOG0628|consen 295 DSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQN 374 (511)
T ss_pred ccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHH
Confidence 222 1245442212222222 2222211111000 000111112221 12223445554566666
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcee--eeccceEEEEEec---CChHHHHHHHHHCC-ceEeecCC--CCEEEEecCCC-
Q 012368 370 SVSKKGHYFKETLKQKLARNPHVKD--VRGLGLIIGIEFD---VSATPVVDACRDSG-LLVLTAGK--GNVVRLVPPLI- 440 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g~~~~i~~~---~~~~~~~~~l~~~G-v~v~~~~~--~~~lRi~~~~~- 440 (465)
++++.. +|.+.++++..+-+.+.. .+-.|+. .+.+. ...+++.+++...| |.+.+... .-++|+.+...
T Consensus 375 ~iR~h~-~La~~fe~lv~~d~~FE~~~~~~lgLv-cFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~ 452 (511)
T KOG0628|consen 375 YIREHV-RLAKEFETLVRADPRFEIVNKRILGLV-CFRLKGDNEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPL 452 (511)
T ss_pred HHHHHH-HHHHHHHHHhhcCCcceeeccccccee-EEeecCCcHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCC
Confidence 555543 445566666555553322 2333433 33332 22355666666554 66666532 24688877543
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 012368 441 ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 441 ~t~e~i~~~l~~l~~~l~~~ 460 (465)
++++++++..+.|.+....+
T Consensus 453 t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 453 TNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 47789999999998877664
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.011 Score=56.44 Aligned_cols=262 Identities=18% Similarity=0.257 Sum_probs=128.5
Q ss_pred cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCc-----ccCccccccccCCCCcCCCC-CCCCCCceEeeCCC
Q 012368 161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF-----HGRTMGALALTSKEHYRSPF-EPVMPGVNFVEYGN 234 (465)
Q Consensus 161 ~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~y-----hg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d 234 (465)
.-||+-||..+-.+... |.++|.-.+--- ||+.......+....|-..+ ....+....+ |
T Consensus 112 p~SGSPANfavYtall~-----------Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~I---D 177 (477)
T KOG2467|consen 112 PYSGSPANFAVYTALLK-----------PHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYI---D 177 (477)
T ss_pred cCCCCchhhHHHhhhcC-----------CCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCce---e
Confidence 45799999887776652 677777654322 33332222222222222111 0112223334 4
Q ss_pred HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHH-HHHHHHHHHHHhCCEEEEeccc-cCCCCCCc-cccccccCCcccEE
Q 012368 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE-FLQFLRDACDDAGALLVFDEVQ-CGLGRTGY-LWAHEHYGIFPDIM 311 (465)
Q Consensus 235 ~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~-~l~~l~~l~~~~g~llI~DEv~-~g~gr~g~-~~~~~~~~~~pdi~ 311 (465)
.+.||+.-..-++.++|+-. ..+++. ...+++++|++.|++|++|=+| +|+.-.|. ...+++ .||+
T Consensus 178 YD~Le~~A~~frPk~iiaG~-------SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~DiV 246 (477)
T KOG2467|consen 178 YDKLEKTATLFRPKLIIAGT-------SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDIV 246 (477)
T ss_pred hHHHHHHHHhcCCcEEEecc-------ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----ccee
Confidence 45555443322345666532 122222 2789999999999999999885 34432332 222333 4677
Q ss_pred Ee--cccCCCccceeeEEeCHHHHh---------------hc----cCCCCcCCCCChHHHHHHHHHHHHHhcCch---H
Q 012368 312 TL--AKPLAGGLPIGAALVTEKVAS---------------AI----NYGDHGSTFAGSPLVCNAAIAVLDKISNPA---F 367 (465)
Q Consensus 312 t~--sK~lg~G~~iG~v~~~~~i~~---------------~~----~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~---~ 367 (465)
|- -|+|-| -|.|.+.-++.+.. .+ -|+.+++..+-. .++...+|.....++ +
T Consensus 247 TTTTHKsLRG-PRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNht---IaalAvALkQa~tpefk~Y 322 (477)
T KOG2467|consen 247 TTTTHKSLRG-PRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHT---IAALAVALKQAMTPEFKEY 322 (477)
T ss_pred eccccccccC-CcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcch---HHHHHHHHHhhCCHHHHHH
Confidence 54 488864 35455554442211 11 122334444332 233333454444444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEEec---CCh---HHHHHHHHHCCceE----eecC----CCCE
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIEFD---VSA---TPVVDACRDSGLLV----LTAG----KGNV 432 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~~~---~~~---~~~~~~l~~~Gv~v----~~~~----~~~~ 432 (465)
.+++.++.+.|.+.|.+. .+.++. .|. ..++.+++. .+. +.+++.+ +|.+ .|+. .++-
T Consensus 323 q~qV~~Nakala~~l~~~--Gy~lvt--gGTDnHlvLvDLr~~G~dGarvE~vle~~---~I~~NKNtvpGD~Sal~PgG 395 (477)
T KOG2467|consen 323 QKQVLKNAKALASALISR--GYKLVT--GGTDNHLVLVDLRPKGVDGARVEKVLELC---HIALNKNTVPGDKSALSPGG 395 (477)
T ss_pred HHHHHHHHHHHHHHHHHc--CceEec--CCccceEEEEeccccCCchHHHHHHHHHh---hhhhcCCcCCCCccccCCCc
Confidence 556666777777666554 222221 111 234455552 222 3333332 2222 1221 1244
Q ss_pred EEEecCCC----CcHHHHHHHHHHHHHHHH
Q 012368 433 VRLVPPLI----ISEQELDQAVEILCKTLP 458 (465)
Q Consensus 433 lRi~~~~~----~t~e~i~~~l~~l~~~l~ 458 (465)
+|+-.|.. ..++|.++..+-|.++++
T Consensus 396 iRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 396 IRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred eeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 88865533 356888888887777654
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0021 Score=55.14 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHhhcC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccc
Q 012368 137 YYSIPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHG 202 (465)
Q Consensus 137 ~~~~~~~~la~~l~~~~~------~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg 202 (465)
+..+.++++++++.+.++ +++|++|+|+++|++.+++.+. +++|.|++.+|.|+|
T Consensus 93 G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~-----------dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA-----------DPGDAFLVPTPYYAA 153 (153)
T ss_pred CcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc-----------CCCCEEEEeCCCCCC
Confidence 344558888888877644 5799999999999999988776 279999999999975
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.014 Score=54.22 Aligned_cols=201 Identities=15% Similarity=0.151 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHH-hh--cccccCCCCC-HHHHHHHHHHHhhcCCCe----EEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 012368 115 GDADWIKAVVDQA-NV--LTHVSNMYYS-IPQIELAKRLVACSFADR----VFFSNTGTEANEAAIKFARKFQRHSNPDS 186 (465)
Q Consensus 115 ~~p~v~~a~~~~~-~~--~~~~~~~~~~-~~~~~la~~l~~~~~~~~----v~~~~sG~eA~~~al~~a~~~t~~~~~~~ 186 (465)
|-.+|.+|.++.- .. ....+.++.+ ..+.-|.+-.++.++.|. .-| -||+.|+..|+--.+.
T Consensus 36 Nq~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~-isGTHAI~~aLfg~LR--------- 105 (416)
T COG4100 36 NQKKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFGAEAALVRPQI-ISGTHAIACALFGILR--------- 105 (416)
T ss_pred HHHHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhccccceeeeee-ecchhHHHHHHHhccC---------
Confidence 3355666666532 11 1111222233 337888888899888442 223 3699999998876552
Q ss_pred CCCCceEEEEcCCcccCccccccccCCC-----CcCCCC--CCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCC
Q 012368 187 KEPATEFVSFTNSFHGRTMGALALTSKE-----HYRSPF--EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG 259 (465)
Q Consensus 187 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~ 259 (465)
|+|..+...+.=.-.....+.+.+.. .+...+ .++.++... |.+.++..+++ ++++|.+--.-+-.
T Consensus 106 --pgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gki----D~~~v~~~i~~-~tkli~IQRS~GY~ 178 (416)
T COG4100 106 --PGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKI----DIQAVKTAISD-RTKLIGIQRSKGYA 178 (416)
T ss_pred --CCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecccccCCcc----cHHHHHHhcCc-cceEEEEEeccCcC
Confidence 78888887654322222222222110 011111 122222221 88999999975 56777665543322
Q ss_pred CcccCCHHHHHHHHHHHHHh--CCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCcc--ceeeEEeCHHHH
Q 012368 260 GIYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL--PIGAALVTEKVA 333 (465)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~--~iG~v~~~~~i~ 333 (465)
---..+-+.++++.++.++- ++++.+|..|..|--. .+...+..|++ ++=|--|||+ -.|++.++++++
T Consensus 179 ~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~-----~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~v 253 (416)
T COG4100 179 WRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEE-----KEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELV 253 (416)
T ss_pred CCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhc-----cCccccchhhhccceeeCCCCceeeccceeechHHHH
Confidence 11112346678888888775 6888999998777322 23334556777 4668888874 568999999998
Q ss_pred hhcc
Q 012368 334 SAIN 337 (465)
Q Consensus 334 ~~~~ 337 (465)
+...
T Consensus 254 e~~~ 257 (416)
T COG4100 254 EAAA 257 (416)
T ss_pred Hhhc
Confidence 8654
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.065 Score=48.99 Aligned_cols=54 Identities=9% Similarity=0.162 Sum_probs=36.0
Q ss_pred CHHHHHhhcCCCCeEEEEEcccCCCCCc-ccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 012368 234 NIEATRKLIQPGKTAAVFVEPIQGEGGI-YSATKEFLQFLRDACDDAGALLVFDEVQ 289 (465)
Q Consensus 234 d~~~le~~l~~~~~a~vi~ep~~~~~G~-~~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (465)
|++++++.++....-+|++-. +++.+ .+-+++-+++|..+|..|++.-|+..+|
T Consensus 142 dleav~~~iee~g~dcilci~--sttscfapr~pd~leaiaaica~~diphivnnay 196 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILCIH--STTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAY 196 (432)
T ss_pred hHHHHHHHHHHhCCceEEEEe--ecccccCCCCCchHHHHHHHHHccCchhhhcccc
Confidence 789999988722222222211 11111 2345677999999999999999999887
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.43 E-value=12 Score=39.34 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=38.5
Q ss_pred EecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 405 EFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 405 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
.+....+++..+..++++-++.... +.+-+++--+.+++|++.++..+.
T Consensus 430 ~~~~s~~~~l~rA~~~~iNlr~~ed-~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 430 RCGCSAEEVLDRAAKRQINLRLVED-GTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred EecCcHHHHHHHHHhhcCceEEeec-CceEEeecccccHHHHHHHHHHHc
Confidence 3344678888888888888876554 567788888889999999998875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 465 | ||||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 3e-99 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 4e-97 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 7e-86 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 8e-82 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-80 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 6e-80 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 3e-79 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 1e-62 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 1e-62 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 9e-62 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 6e-61 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 4e-58 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 2e-57 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 2e-57 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 3e-57 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 8e-55 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 2e-54 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 2e-54 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 1e-52 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 6e-47 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 1e-45 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 2e-45 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 3e-45 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 4e-42 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 6e-42 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 6e-42 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 8e-42 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 3e-40 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 4e-39 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 4e-39 | ||
| 4atp_A | 456 | Structure Of Gaba-Transaminase A1r958 From Arthroba | 1e-37 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 2e-37 | ||
| 3dxw_A | 452 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 4e-34 | ||
| 2zuk_A | 439 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 4e-34 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 1e-33 | ||
| 3nui_A | 478 | Crystal Structure Of Omega-Transferase From Vibrio | 3e-33 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 6e-33 | ||
| 4grx_A | 465 | Structure Of An Omega-Aminotransferase From Paracoc | 6e-33 | ||
| 4e3r_A | 473 | Plp-Bound Aminotransferase Mutant Crystal Structure | 1e-32 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 1e-32 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 2e-32 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 3e-32 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 5e-32 | ||
| 4e3q_A | 473 | Pmp-Bound Form Of Aminotransferase Crystal Structur | 6e-32 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 7e-32 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 1e-31 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 2e-31 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 3e-31 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 9e-31 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 7e-30 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 8e-30 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 1e-27 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 4e-27 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 5e-27 | ||
| 2cin_A | 449 | Lysine Aminotransferase From M. Tuberculosis In The | 7e-27 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 1e-26 | ||
| 2jje_A | 449 | Crystal Structure Of T330s Mutant Of Rv3290c From M | 2e-26 | ||
| 2jjf_A | 449 | N328a Mutant Of M. Tuberculosis Rv3290c Length = 44 | 2e-26 | ||
| 2jjh_A | 449 | E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | 6e-26 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 3e-23 | ||
| 2cfb_A | 411 | Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm | 1e-22 | ||
| 3k28_A | 429 | Crystal Structure Of A Glutamate-1-Semialdehyde Ami | 2e-22 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 2e-22 | ||
| 1ohv_A | 472 | 4-aminobutyrate-aminotransferase From Pig Length = | 2e-21 | ||
| 4e77_A | 429 | 2.0a Crystal Structure Of A Glutamate-1-Semialdehyd | 7e-21 | ||
| 4ao9_A | 454 | Biochemical Properties And Crystal Structure Of A N | 2e-20 | ||
| 3l44_A | 434 | Crystal Structure Of Bacillus Anthracis Heml-1, Glu | 3e-20 | ||
| 2gsa_A | 432 | Crystal Structure Of Glutamate-1-Semialdehyde Amino | 3e-20 | ||
| 2hoy_A | 432 | Inter-Subunit Signaling In Gsam Length = 432 | 4e-20 | ||
| 3fq7_A | 427 | Gabaculine Complex Of Gsam Length = 427 | 4e-20 | ||
| 3fqa_A | 427 | Gabaculien Complex Of Gabaculine Resistant Gsam Ver | 7e-20 | ||
| 3fq8_A | 427 | M248i Mutant Of Gsam Length = 427 | 8e-20 | ||
| 2yku_A | 465 | Structural Determinants Of The Beta-Selectivity Of | 1e-18 | ||
| 2epj_A | 434 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 1e-17 | ||
| 4a0g_A | 831 | Structure Of Bifunctional Dapa Aminotransferase-Dtb | 1e-13 | ||
| 4a0f_A | 831 | Structure Of Selenomethionine Substituted Bifunctio | 3e-12 | ||
| 2cy8_A | 453 | Crystal Structure Of D-Phenylglycine Aminotransfera | 4e-10 |
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452 | Back alignment and structure |
|
| >pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465 | Back alignment and structure |
|
| >pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449 | Back alignment and structure |
|
| >pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449 | Back alignment and structure |
|
| >pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411 | Back alignment and structure |
|
| >pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472 | Back alignment and structure |
|
| >pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429 | Back alignment and structure |
|
| >pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454 | Back alignment and structure |
|
| >pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434 | Back alignment and structure |
|
| >pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432 | Back alignment and structure |
|
| >pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432 | Back alignment and structure |
|
| >pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427 | Back alignment and structure |
|
| >pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465 | Back alignment and structure |
|
| >pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434 | Back alignment and structure |
|
| >pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 611 bits (1579), Expect = 0.0
Identities = 152/401 (37%), Positives = 236/401 (58%), Gaps = 9/401 (2%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
++++ Y A + GKG +++D +G+EY+D + GIAV ALGH +
Sbjct: 20 QTAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALV 79
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
+A+ Q L H SN++ + P + L ++L+ +FA+RV F N+GTEANE A K AR +
Sbjct: 80 EALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYAC 139
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
+ K T+ ++F N+FHGR++ +++ + Y F P + V + ++ A +
Sbjct: 140 VRHSPFK---TKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKA 196
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
++ T AV VEPIQGEGG+ +AT EFL+ LRD CD+ ALLVFDEVQCG+GRTG L+A
Sbjct: 197 VMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFA 255
Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
+ HYG+ PDI+T AK L GG P+ A L T+++ASA + G HGST+ G+PL C A A D
Sbjct: 256 YMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFD 315
Query: 361 KISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV----SATPVVDA 416
I+ P L + K F + L+ + D+RG+GL+IG E A + A
Sbjct: 316 IINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYA 375
Query: 417 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
++G++VL AG +V+R P L++ E ++ + ++ + +
Sbjct: 376 GAEAGVMVLNAG-ADVMRFAPSLVVEEADIHEGMQRFAQAV 415
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 608 bits (1570), Expect = 0.0
Identities = 160/397 (40%), Positives = 244/397 (61%), Gaps = 9/397 (2%)
Query: 64 EVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAV 123
++ E+ ++ TY R +VL G+G L+D + ++YLD SSGI V ALG+ A + +
Sbjct: 2 KMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKI 61
Query: 124 VDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSN 183
Q + L H SN+YY+ AK L S +RVFF+N+GTE+ E A+K ARK+ +
Sbjct: 62 KAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKG 121
Query: 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243
+F++F +SFHGRT+GAL+LT+ E Y+ PF+P++ GV F +Y +I + KL+
Sbjct: 122 VK----GGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVN 177
Query: 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303
KT A+ +E +QGEGGI A K+F + LR CD+ LL+ DE+QCG+GR+G +A+EH
Sbjct: 178 E-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEH 236
Query: 304 YGIFPDIMTLAKPLAGGLPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKI 362
I PDIMT AK L GL +GA ++ +KVAS ++ GDHGST+ G+PLVC AV +
Sbjct: 237 AQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIF 296
Query: 363 SNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDS 420
L +V+K Y +++L + + K +GLG + G+ D V V+ C+++
Sbjct: 297 KEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQEN 356
Query: 421 GLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
LL+++ G N +R +PPLI+ ++ +D+ E L K L
Sbjct: 357 ALLLISCG-ENDLRFLPPLILQKEHIDEMSEKLRKAL 392
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 607 bits (1569), Expect = 0.0
Identities = 185/399 (46%), Positives = 257/399 (64%), Gaps = 9/399 (2%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
++K L+ TY+R P GKG +YD +G YLD +SGIAVN LGH +
Sbjct: 3 SDKIHHHHHHMYLMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLV 62
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
+A+ DQA L H SN++++ PQ+ELA+ L +F +VFF+NTGTEANEAAIK ARK+ +
Sbjct: 63 EAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGK 122
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
+ +S NSFHGRT+G+L T + Y+ PFEP++PG + E+ N+E R+
Sbjct: 123 KKSEK----KYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR 178
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+ AVF+EPIQGE GI ATKEFL+ R CD+ ALLVFDEVQCG+GRTG L+A
Sbjct: 179 KMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFA 237
Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
++ YG+ PD++T AK L GG+PIGA +V E+ A+ + GDHG+TF G+PL C A + V+
Sbjct: 238 YQKYGVVPDVLTTAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIK 296
Query: 361 KISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACR 418
+++ FL V +KG+Y + L++ V DVRG+GL+IGI+F +VS V C
Sbjct: 297 ELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCF 356
Query: 419 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
++ LLV+ AG N +R +PPL + E+D AVE L K L
Sbjct: 357 ENKLLVVPAG-NNTIRFLPPLTVEYGEIDLAVETLKKVL 394
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 587 bits (1517), Expect = 0.0
Identities = 155/400 (38%), Positives = 243/400 (60%), Gaps = 16/400 (4%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
+ + ++EAEK L G YN+ +++ G+G +++DAEG EY+D G V LGHG+ + +
Sbjct: 8 DWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVV 67
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVA--CSFADRVFFSNTGTEANEAAIKFARKF 178
+AV QA L + + + E + L A +RVF N+GTEANEAA+KFAR
Sbjct: 68 EAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH 127
Query: 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT 238
+FV+ F GRTMG+L++T + YR PF P++ V F+ Y ++EA
Sbjct: 128 TGR---------KKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEAL 178
Query: 239 RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
++ + +TAAV +EP+QGEGG+ AT EFL+ R+ + GALL+ DE+Q G+GRTG
Sbjct: 179 KRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR 237
Query: 299 WAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAV 358
+A EH+GI PDI+TLAK L GG+P+G A++ E+VA ++ G HG+TF G+PL A +A
Sbjct: 238 FAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAA 297
Query: 359 LDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATP-VVDAC 417
+ + ++ G +F E L+ +P +++VRG+GL++G+E A P +
Sbjct: 298 IRYLERTRLWERAAELGPWFMEKLRA--IPSPKIREVRGMGLMVGLELKEKAAPYIARLE 355
Query: 418 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
++ +L L AG V+R +PPL+I +++L++ VE + L
Sbjct: 356 KEHRVLALQAG-PTVIRFLPPLVIEKEDLERVVEAVRAVL 394
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 582 bits (1503), Expect = 0.0
Identities = 163/386 (42%), Positives = 240/386 (62%), Gaps = 14/386 (3%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L+ Y R PV GKG LYD EG+EYLD SGI VN+LGH +A+ +Q L H
Sbjct: 3 LMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLH 62
Query: 133 VSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191
VSN+Y + Q ELA +LV + + +VFF+N+GTE+ EAAIK ARK+ R +
Sbjct: 63 VSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKN----KW 118
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251
+F+SF NSFHGRT G+L+ T + + FEP++PG ++ + +I++ KL+ +TA +
Sbjct: 119 KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDE-ETAGII 177
Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311
+E IQGEGG+ A+++FL L++ C + LL+ DEVQ G+GRTG +A++H+ + PD++
Sbjct: 178 IEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237
Query: 312 TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371
LAK L GG+PIGA L E+VA + G HGSTF G+PL C A V+D++ L V
Sbjct: 238 ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EKLLPHV 295
Query: 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGN 431
+ G+YFKE LK+ V+G GL++G+E + V + GLL+ G
Sbjct: 296 REVGNYFKEKLKELGK-----GKVKGRGLMLGLELERECKDYVLKALEKGLLINCTA-GK 349
Query: 432 VVRLVPPLIISEQELDQAVEILCKTL 457
V+R +PPLII ++ +D+A+ +L + L
Sbjct: 350 VLRFLPPLIIQKEHIDRAISVLREIL 375
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 519 bits (1340), Expect = 0.0
Identities = 138/396 (34%), Positives = 209/396 (52%), Gaps = 6/396 (1%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
K+++E Y+ P+V++ +G + D EG Y+DL S + GH I A
Sbjct: 1 KDIIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINA 60
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
++DQAN +T S ++S +++ + + V NTG EA E AIK AR++ +
Sbjct: 61 LIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWA-YD 119
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
+ E + ++FHGRTMGA++++S E Y+ F P++PG+ + YG++EA + I
Sbjct: 120 VKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI 179
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
P TAA +EPIQGE GI FL+ + C L V DE+Q GLGRTG ++A +
Sbjct: 180 TP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACD 238
Query: 303 HYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
+ PD+ L K L GG+ PI A + G HGSTF G+PL C +IA L+
Sbjct: 239 WDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV 298
Query: 362 ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSG 421
+ + G LK+ NP + +VRG GL IGIE + A P + + +G
Sbjct: 299 LEEEKLTERSLQLGEKLVGQLKE--IDNPMITEVRGKGLFIGIELNEPARPYCEQLKAAG 356
Query: 422 LLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
LL NV+R+ PPL+ISE++L+ A + + L
Sbjct: 357 LLCKETH-ENVIRIAPPLVISEEDLEWAFQKIKAVL 391
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 521 bits (1343), Expect = 0.0
Identities = 139/410 (33%), Positives = 211/410 (51%), Gaps = 10/410 (2%)
Query: 60 RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+ ++ + E K Y+ PVVL KG +YD + Y D S + GH +
Sbjct: 27 KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNI 86
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF- 178
+ A+++QA LT S ++S+P + L D+V NTG EANE A K RK+
Sbjct: 87 LNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG 146
Query: 179 -QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237
+ P++ + V N+F GRT+G ++ ++ + S F P P + V Y ++EA
Sbjct: 147 YEVKKIPENM---AKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEA 203
Query: 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
+ ++ A VEPIQGE G+ + +LQ + D C L V DEVQ GLGRTG
Sbjct: 204 LEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK 263
Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
L HY + PD++ L K L+GG PI A L + + I G+HGST+ G+PL + +
Sbjct: 264 LLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICV 323
Query: 357 AVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDA 416
L+ + N + K G F E LK++L + V+DVRG GL+ IEF V+D
Sbjct: 324 EALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDI 383
Query: 417 C---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463
C +++GL+ +RL PPL I++++LD+ EI+ KT+ D
Sbjct: 384 CLKLKENGLITRDVH-DKTIRLTPPLCITKEQLDECTEIIVKTVKFFDER 432
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 512 bits (1321), Expect = 0.0
Identities = 139/448 (31%), Positives = 210/448 (46%), Gaps = 20/448 (4%)
Query: 17 LSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGT 76
S+ +L+R + + +A SV + + + ++ E E K
Sbjct: 2 FSKLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPT-------SDDIFEREYKYGAHN 54
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
Y+ PV L GKG L+D EGR+Y D S + GH + A+ Q + LT S
Sbjct: 55 YHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRA 114
Query: 137 YYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF--QRHSNPDSKEPATEFV 194
+Y+ E + + +V NTG EA E A K ARK+ K + V
Sbjct: 115 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYK---AKIV 171
Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254
+F GRT+ A++ ++ F P MPG + + Y ++ A + +Q AA VEP
Sbjct: 172 FAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEP 231
Query: 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA 314
IQGE G+ +L +R+ C L + DE+Q GL RTG A ++ + PDI+ L
Sbjct: 232 IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLG 291
Query: 315 KPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSK 373
K L+GGL P+ A L + + I G+HGST+ G+PL C AIA L+ + + K
Sbjct: 292 KALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK 351
Query: 374 KGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD----VSATPVVDACRDSGLLVLTAGK 429
G + L + + V VRG GL+ I A V RD+GLL
Sbjct: 352 LGIILRNELMK--LPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTH- 408
Query: 430 GNVVRLVPPLIISEQELDQAVEILCKTL 457
G+++R PPL+I E EL +++EI+ KT+
Sbjct: 409 GDIIRFAPPLVIKEDELRESIEIINKTI 436
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 482 bits (1242), Expect = e-169
Identities = 156/435 (35%), Positives = 224/435 (51%), Gaps = 59/435 (13%)
Query: 61 NNKEVMEAEKKLLVGTYNRA---PVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGD 116
+++++E L + P+V+ G+G +YD +G +YLD +SGI VN LG
Sbjct: 2 LSRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSH 61
Query: 117 ADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACS---FADRVFFSNTGTEANEAAI 172
+ IK ++Q L H + N +Y+IPQ+ELAK+LV S F +VFFSN+GTEA EA+I
Sbjct: 62 PEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASI 121
Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVE 231
K + R ++F FHGRT G+++LT+ + RS P MPGV V
Sbjct: 122 KVVKNTGRK----------YIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVP 171
Query: 232 YGNI--------------------------EATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265
Y N L+ P + A +F EPIQGEGG
Sbjct: 172 YPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPP 231
Query: 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIG 324
K F L+ G LLV DEVQ GLGRTG L+A E++ PD++TLAK L GG +PIG
Sbjct: 232 KNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIG 291
Query: 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQ 384
A + + + G H +TF G+ L C V+D + + L V++ G F E L+
Sbjct: 292 ATIFRKDLDFK--PGMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQG 347
Query: 385 KLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIIS 442
DVRG+GL G+E+ ++ GLL+L AG + +R++PPL+IS
Sbjct: 348 ------LADDVRGIGLAWGLEYNEKKVRDRIIGESFKRGLLLLPAG-RSAIRVIPPLVIS 400
Query: 443 EQELDQAVEILCKTL 457
E+E Q ++IL K +
Sbjct: 401 EEEAKQGLDILKKVI 415
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 478 bits (1232), Expect = e-167
Identities = 107/430 (24%), Positives = 163/430 (37%), Gaps = 37/430 (8%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDA-EGREYLDLSSGIAVNALGHGDADWIK 121
V E + ++ + L G L DA GR YLD+ + +A +ALG +
Sbjct: 18 DRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVD 77
Query: 122 AVVDQANVLTHVSNMY-----YSIPQIELAK---RLVACSFADRVFFSNTGTEANEAAIK 173
A ++ N YS+ + R++ +FF G A E A+K
Sbjct: 78 DREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALK 137
Query: 174 FARKFQR---HSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNF 229
A ++ ++ T+ + +FHGR+ L+LT +K + F
Sbjct: 138 AAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRID 197
Query: 230 VEY------------------GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF 271
Y A + P A EPIQGEGG EF
Sbjct: 198 APYMRPGLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEFFAA 256
Query: 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEK 331
+R+ CD+ ALL+FDEVQ G G TG WA++ + PDI+ K + V E
Sbjct: 257 MRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEV 316
Query: 332 VASAINY-GDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390
+ ST+ G+ A +L+ I + G Y + L + A P
Sbjct: 317 ADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFP 376
Query: 391 H-VKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD 447
V D RG GL+ ++ ++VL AG + VR PPL +S E+D
Sbjct: 377 AVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEID 435
Query: 448 QAVEILCKTL 457
A+ + L
Sbjct: 436 AAIAAVRSAL 445
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 473 bits (1219), Expect = e-166
Identities = 138/428 (32%), Positives = 212/428 (49%), Gaps = 40/428 (9%)
Query: 61 NNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + + P+ + C+++D EGREYLD + GIAV GH
Sbjct: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVS-NMYYSIPQIELAKRLVA---CSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + FA + TG+EA E A+K A
Sbjct: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEYGN 234
R + S ++F+ ++HGRT LALT K + Y + + V Y
Sbjct: 123 RAATKRSG---------TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 235 ----------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
I + ++ + P AA+ +EP+QGEGG Y+++ F+Q LR CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DEVQ G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400
G T+AG+P+ C AA+ VL L + G K+ L ++P + DVRGLG
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 401 IIGIEFDVS----------ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 449
+I IE +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 450 VEILCKTL 457
+EI+ +
Sbjct: 414 LEIISQCF 421
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 463 bits (1194), Expect = e-161
Identities = 124/437 (28%), Positives = 195/437 (44%), Gaps = 47/437 (10%)
Query: 59 GRNNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
G ++ +++ + + PV G + D +G +DL SGIAV +G+
Sbjct: 21 GPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAP 80
Query: 118 DWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAIK 173
++AV Q TH M + + ++L R N+G+EA E A+K
Sbjct: 81 KVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVK 140
Query: 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEY 232
AR V+F +++HGRT +ALT+K Y+ F P P +
Sbjct: 141 IARSHTHKPA---------VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPL 191
Query: 233 GN----------------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270
I K I AAV +EPIQGEGG FL
Sbjct: 192 SYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLP 251
Query: 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTE 330
L D C + + DEVQ G RTG ++A EH GI PD++ AK +AGGLP+ A
Sbjct: 252 TLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRA 311
Query: 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390
++ + + G T+ G+P+ C AA+A ++ I + +A + K+ L + A +
Sbjct: 312 EIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDD 371
Query: 391 HVKDVRGLGLIIGIEF--DVSATP-------VVDACRDSGLLVLTAGK-GNVVRLVPPLI 440
+ DVRG G +I +E + P + +G++VL+ G GNVVR +PPL
Sbjct: 372 RIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLS 431
Query: 441 ISEQELDQAVEILCKTL 457
I + L++ +++L + L
Sbjct: 432 IGDDLLNEGLDVLEEVL 448
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 457 bits (1177), Expect = e-159
Identities = 130/432 (30%), Positives = 187/432 (43%), Gaps = 42/432 (9%)
Query: 59 GRNNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
G + + E + + PV G + DA+G ++DL +GIAV +G
Sbjct: 24 GPRSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHP 83
Query: 118 DWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAIK 173
A+ DQA TH M +++A+ L A R N+G EA E AIK
Sbjct: 84 AVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIK 143
Query: 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEY 232
AR V+F N++HGRT +ALT+K Y+S F P P V +
Sbjct: 144 VARLATGRPA---------VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPA 194
Query: 233 GN-----------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA 275
I I AA+ +EPIQGEGG FL L
Sbjct: 195 SYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAW 254
Query: 276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASA 335
+ G + + DEVQ G RTG +A EH GI PDI+T+AK +AGG+P+ A ++ A
Sbjct: 255 ASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDA 314
Query: 336 INYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV 395
+ G G T+ G+P+ C AA+A L + A L + +V
Sbjct: 315 VYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV 374
Query: 396 RGLGLIIGIEF--DVSATP-------VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQE 445
RG G ++ IE + P + G+L+LT G GNV+RL+PPL+I +
Sbjct: 375 RGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDL 434
Query: 446 LDQAVEILCKTL 457
LD+ + L +
Sbjct: 435 LDEGITALSDII 446
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 431 bits (1111), Expect = e-149
Identities = 115/430 (26%), Positives = 194/430 (45%), Gaps = 46/430 (10%)
Query: 62 NKEVMEAEKKLL--VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
K + + + + + P+ ++ G+G +L + GRE +DLS +LG+G
Sbjct: 5 TKALYDRDGAAIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAI 64
Query: 120 IKAVVDQANVLTHVSNMY-YSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAIKFA 175
+ AV A + + + P + LA+RL+A +++F ++G++ANEAA +
Sbjct: 65 VAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI 124
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN- 234
K S ++F ++HG T+G++A + G+ + Y +
Sbjct: 125 VKATGRSG---------VIAFAGAYHGCTVGSMAFSGHSVQA--DAAKADGLILLPYPDP 173
Query: 235 ----------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD 278
+ + G A F+EPIQ +GG+ FL+ D C
Sbjct: 174 YRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRA 233
Query: 279 AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY 338
G L+V DEV+ GL R+G L EH G PDI+ L K L GGLP+ A + ++ +
Sbjct: 234 HGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCAS- 292
Query: 339 GDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398
T G+P+ A +AVL+ I A +KG ++ L + R+P + D+RG
Sbjct: 293 AFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR 352
Query: 399 GLIIGIEF---DVSATP-------VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELD 447
GL G+E S P ++ GL+V G GNV+ PPL I+E ++
Sbjct: 353 GLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIH 412
Query: 448 QAVEILCKTL 457
+A+++L +
Sbjct: 413 KALDLLDRAF 422
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 429 bits (1105), Expect = e-148
Identities = 116/436 (26%), Positives = 183/436 (41%), Gaps = 50/436 (11%)
Query: 61 NNKEVMEAEKKLLV-GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
++ + LV P+++ KG +YDA+GR LD +SG LGH +
Sbjct: 5 DDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEI 64
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARK 177
+ + + A L H+ + S P ++LA RL + R +TG E+NEAAI+ A+
Sbjct: 65 VSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL 124
Query: 178 F-QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN-- 234
++ E V F S+HG T A + T R P G +
Sbjct: 125 VTGKY----------EIVGFAQSWHGMTGAAASATYSA-GRKGVGPAAVGSFAIPAPFTY 173
Query: 235 ------------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276
G AA EPI GGI ++ L+ C
Sbjct: 174 RPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKC 233
Query: 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI 336
+ G LL+ DE Q G+GRTG ++A + G+ PDI+TL+K L GLP+ A + + +
Sbjct: 234 EARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERA 293
Query: 337 NYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394
+ +T PL + VLD + +A + G + L + R + D
Sbjct: 294 HELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD 353
Query: 395 VRGLGLIIGIEF---DVSATP-------VVDACRDSGLLV--LTAG-KGNVVRLVPPLII 441
VRG GL++G+E + P + C + GL + + G V R+ PPL +
Sbjct: 354 VRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTV 413
Query: 442 SEQELDQAVEILCKTL 457
SE E+D + +L + +
Sbjct: 414 SEDEIDLGLSLLGQAI 429
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 426 bits (1098), Expect = e-147
Identities = 105/451 (23%), Positives = 162/451 (35%), Gaps = 58/451 (12%)
Query: 59 GRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD 118
G ++E+M+ + +G L D +G LDL S I+ +G+
Sbjct: 24 GPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPA 83
Query: 119 WIKAVVDQANVLTHVSN-MYYSIPQIELAKRL------VACSFADRVFFSNTGTEANEAA 171
+K V NV T ++ +P ++L VA ++ G+ +NE A
Sbjct: 84 LVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENA 143
Query: 172 IKFARKFQRH-----------------SNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
K + R N P +SF +FHGRTMG LA T +
Sbjct: 144 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK 203
Query: 215 ------------------HYRSPFEPVMPGVNFVEYGNIEATRKLIQ-----PGKTAAVF 251
+ P E + E +E LI A +
Sbjct: 204 AIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII 263
Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPD 309
VEPIQ EGG A+ +F + LRD G + DEVQ G G TG WAHEH+G+ D
Sbjct: 264 VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPAD 323
Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369
+MT +K + G +T+ G P V++ I L+
Sbjct: 324 VMTFSKKMMTGGFFHKEEFRPNAP-----YRIFNTWLGDPSKNLLLAEVINIIKREDLLS 378
Query: 370 SVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDVSAT--PVVDACRDSGLLVLT 426
+ + G L AR P + VRG G + + ++ R+ G+++
Sbjct: 379 NAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGG 438
Query: 427 AGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
G +R P L+ + + I L
Sbjct: 439 CG-DKSIRFRPTLVFRDHHAHLFLNIFSDIL 468
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 356 bits (915), Expect = e-119
Identities = 126/423 (29%), Positives = 199/423 (47%), Gaps = 47/423 (11%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
+ V A +GC + D +G+ YLD SG+ G+G + +A Q L++
Sbjct: 30 NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQS 89
Query: 139 SIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
P I+LA++L + +FFSN+G+EANE A K AR++ + +F+S
Sbjct: 90 HEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHR---YKFMSRY 146
Query: 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV---------------EYG-----NIEA 237
+HG TM +A T + R +EP G V Y ++
Sbjct: 147 RGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDR 206
Query: 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
AA +EPI GGI A +++++ + + C GALL+ DEV CG GRTG
Sbjct: 207 VMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK 266
Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGSPL 350
+ +Y + PDI+T+AK + LP+ A V ++ A H +TF G+P
Sbjct: 267 AFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPA 326
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE----- 405
C A+ L+ I N + ++ G E LK+++ +P V D+RG GL++GIE
Sbjct: 327 ACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDK 386
Query: 406 -----FDVSATP-VVDACRDSGLLV-----LTAGKGNVVRLVPPLIISEQELDQAVEILC 454
D VV+AC++ GL++ TAG N++ L PPL+IS +E+ + L
Sbjct: 387 ETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLK 446
Query: 455 KTL 457
+
Sbjct: 447 TAM 449
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 340 bits (874), Expect = e-113
Identities = 102/427 (23%), Positives = 179/427 (41%), Gaps = 49/427 (11%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVS 134
++A G+G ++D GR+ +D +G+ +G+G A+ QA L H
Sbjct: 30 GESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAY 89
Query: 135 NMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+ + I LAK ++ + RV+F +G++ANE IK + K +
Sbjct: 90 VGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEK---KK 146
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------EYG--- 233
+S +HG + +LT + + + F+ V ++
Sbjct: 147 IISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHC 206
Query: 234 --NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
+E P AA EPI G GGI + + ++ LLV DEV G
Sbjct: 207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTG 266
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGS 343
GR G ++ +HYGI PD++T+AK L P+ +V ++V + G HG
Sbjct: 267 FGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW 326
Query: 344 TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403
T++ P+ A +A L+ I + + + G YF+ L + + + +V +VRG G++
Sbjct: 327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAA 386
Query: 404 IE----------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 450
+E FD S V A SG++ +G+++ PPL ++ ++ D V
Sbjct: 387 VEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVV 446
Query: 451 EILCKTL 457
+
Sbjct: 447 SKTADAV 453
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 328 bits (842), Expect = e-108
Identities = 120/431 (27%), Positives = 197/431 (45%), Gaps = 59/431 (13%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
Y+ P+++ SG G K+ D G+EY D S + +N GH + A+ Q + H
Sbjct: 21 KDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHS- 79
Query: 135 NMYYSI---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
+ P +LA+ L+ S RVF+S++G EA E A+K A ++ ++ K
Sbjct: 80 -TLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEK-- 136
Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV--------EYGN------- 234
+F++ N +HG T+GA+++ S E + + P+M E G+
Sbjct: 137 -QKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQ 195
Query: 235 -IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+ +L++ + AA+ +E +QG G+ + +L +R+ C L++ DEV
Sbjct: 196 CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT 255
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------H 341
G GRTG ++A EH + PD+M K + GG LPI TE + A Y D H
Sbjct: 256 GFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF-YDDYENLKTFFH 314
Query: 342 GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401
G ++ G+ L C A+ L + + V++K L Q L PHV D+R LG +
Sbjct: 315 GHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLL-QDLHALPHVGDIRQLGFM 373
Query: 402 IGIEFDVS-------------ATPVVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQEL 446
G E S V R+ G+L L G+V+ +PPL + +EL
Sbjct: 374 CGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL----GDVIAFLPPLASTAEEL 429
Query: 447 DQAVEILCKTL 457
+ V I+ + +
Sbjct: 430 SEMVAIMKQAI 440
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 326 bits (839), Expect = e-108
Identities = 117/420 (27%), Positives = 185/420 (44%), Gaps = 43/420 (10%)
Query: 78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY 137
++ V G+G LYD GR YLD SSG V +GHG A+ + + QA L V
Sbjct: 9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQ 68
Query: 138 YS-IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
+S E A RL R + + G+EA E+A+K AR++ + + +
Sbjct: 69 FSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGR---FKVI 125
Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN-------------IEATRKL 241
+ S+HG ++G+LA + R + P+M + + + A +
Sbjct: 126 TRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLER 185
Query: 242 IQPGKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
P AA EP+ G + + + +RD CD+AG + + DEV G+GR G A
Sbjct: 186 EGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLA 245
Query: 301 HEHY-GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD----HGSTFAGSPLVCNA 354
+ G+ PDI L K LA G P+ L +V + G HG T+AG P+ A
Sbjct: 246 LSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAA 305
Query: 355 AIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE--------- 405
++VLD + + ++G L+ AR P + VRG GL++G+
Sbjct: 306 GLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQA 365
Query: 406 FDVS--ATPVVDACRDSGLLV------LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
F+ A+ + A GL+ G+G+ + L PPL I+ E+D + +L L
Sbjct: 366 FETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGAL 425
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-108
Identities = 111/425 (26%), Positives = 182/425 (42%), Gaps = 53/425 (12%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNM 136
R VV+ G+G + D GR YLD +SG+ G I A Q H
Sbjct: 42 RGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFG 101
Query: 137 YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
S + L+++LV S D RVF++N+G+EAN+ +K K + +
Sbjct: 102 RMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQK---RKIL 158
Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------EYG----- 233
+ N++HG T + ++T K Y S F +PG + ++
Sbjct: 159 TRWNAYHGVTAVSASMTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAR 217
Query: 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
+E T + A F EP+ G GG+ K + Q + ++ DEV CG G
Sbjct: 218 ELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFG 277
Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGSTF 345
RTG W Y PD + +K L G P+GA ++ +++ + HG T
Sbjct: 278 RTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTA 337
Query: 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405
+G P+ C A+ +D + N +V + F+E L + +A P++ + RG+G + +E
Sbjct: 338 SGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERL-KHIAERPNIGEYRGIGFMWALE 396
Query: 406 ----------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEI 452
FD + + + + C D GL+ G V L PP I++E ++D+ +
Sbjct: 397 AVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL--GQSVVLCPPFILTEAQMDEMFDK 454
Query: 453 LCKTL 457
L K L
Sbjct: 455 LEKAL 459
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 319 bits (821), Expect = e-105
Identities = 104/422 (24%), Positives = 183/422 (43%), Gaps = 47/422 (11%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
+ R P ++ + +G L D +GR+ D SG+ GH + +AV Q + L +
Sbjct: 29 FLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGF 88
Query: 137 YYS-IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
Y +LA+++ + + VFF+++G+E A+K R + R +K T+
Sbjct: 89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATK---TKM 145
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE----YGN--------------I 235
+ +HG + +L R F M V+ + N
Sbjct: 146 IGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALA 205
Query: 236 EATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
+ KLI+ AAVFVEP+ G G+ + +L+ R+ C+ LLVFDEV G
Sbjct: 206 DELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGF 265
Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD---------HG 342
GRTG ++ + +G+ PD+M +AK + G +P+GA + + ++ HG
Sbjct: 266 GRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHG 325
Query: 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402
T++ P+ C A +A L + + SV++ +F++ L + +V D+R GL
Sbjct: 326 YTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKAL-HGIKGAKNVIDIRNFGLAG 384
Query: 403 GIEF---DVSATP----VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455
I+ D A A +G V G+ ++ P Q+LD+ + + +
Sbjct: 385 AIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG--GDTLQFGPTFNSKPQDLDRLFDAVGE 442
Query: 456 TL 457
L
Sbjct: 443 VL 444
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = e-104
Identities = 111/421 (26%), Positives = 187/421 (44%), Gaps = 47/421 (11%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNM 136
V+ G+G L+D+EG + +D +G+ +G+G D+ +A Q L +
Sbjct: 31 AGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFK 90
Query: 137 YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
+EL+ L + A RVF++N+G+E+ + I+ R++ K +
Sbjct: 91 TTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEK---KTLI 147
Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV---------------EYG-----N 234
N +HG T+G +L ++ + +PG+ + E+G
Sbjct: 148 GRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARW 207
Query: 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
+E I K AA EPIQG GG+ + + C LLV DEV CG GR
Sbjct: 208 LEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGR 267
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD---HGSTFAGSPL 350
TG + H+H+G PD+ T AK L+ G LPIGA V ++VA + G HG T++G P+
Sbjct: 268 TGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPV 327
Query: 351 VCNAAIAVLDKISNPAFLASVSKK-GHYFKETLKQKLARNPHVKDVRGLGLIIGIE---- 405
A A + + + + V G Y ++ ++ +R HV DVRG+G++
Sbjct: 328 CAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKN 387
Query: 406 ------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456
F T D + L++ G+ + PPL+++ E+D+ + + +
Sbjct: 388 KAKRELFPDFGEIGTLCRDIFFRNNLIMRAC--GDHIVSAPPLVMTRAEVDEMLAVAERC 445
Query: 457 L 457
L
Sbjct: 446 L 446
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 306 bits (787), Expect = e-100
Identities = 99/423 (23%), Positives = 182/423 (43%), Gaps = 50/423 (11%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
A VL +G ++ +GR +D +G+ +G+G + + A+ QA VL + S Y
Sbjct: 35 SAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYM 94
Query: 139 S-IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
+ P LA+++ + D R+FF+ G+ A ++A++F+ + K +
Sbjct: 95 ATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQK---KRIIV 151
Query: 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV--------------EYG-----NIE 236
+ +HG T A T + F+ ++F+ + E
Sbjct: 152 RYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFE 211
Query: 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + P AA EPI GG+ + + C+ L + DEV G GR G
Sbjct: 212 DRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG 271
Query: 297 YLWAHEH-YGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGSTFAG 347
+A E +G+ PDI+T AK + G +P+G ++E V + I+ + +G T++
Sbjct: 272 EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSN 331
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE-- 405
P+ C AA+A ++ + + + YF L L P V + R +GL+ ++
Sbjct: 332 QPVACAAALANIELMEREGIVDQAREMADYFAAAL-ASLRDLPGVAETRSVGLVGCVQCL 390
Query: 406 --------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454
+ + C + GL+V G++ + PPLIIS ++D+ V I+
Sbjct: 391 LDPTRADGTAEDKAFTLKIDERCFELGLIVRPL--GDLCVISPPLIISRAQIDEMVAIMR 448
Query: 455 KTL 457
+ +
Sbjct: 449 QAI 451
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 304 bits (780), Expect = 2e-99
Identities = 122/410 (29%), Positives = 196/410 (47%), Gaps = 45/410 (10%)
Query: 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139
+ S +GC+L ++GR +D S G+ A+ Q + ++HV M+
Sbjct: 25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGG 82
Query: 140 I---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
I P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F+
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFL 138
Query: 195 SFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEY-----------GNIEATRKLI 242
+F N +HG T GA+++ ++ S ++ +P F ++ +L+
Sbjct: 139 TFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLM 198
Query: 243 Q--PGKTAAVFVEPI-QGEGG--IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
+ AAV +EPI QG GG +Y E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 199 AAHRHEIAAVIIEPIVQGAGGMRMYHP--EWLKRIRKICDREGILLIADEIATGFGRTGK 256
Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLV 351
L+A EH I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 257 LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA 316
Query: 352 CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVS 409
C AA A L + + + V+ +E L V DVR LG I +E V+
Sbjct: 317 CAAANASLAILESGDWQQQVADIEVQLREQL-APARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 410 ATPVVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+ + G+ + G ++ L+PP II Q+L + + + +
Sbjct: 376 MAALQKFFVEQGVWIRPF----GKLIYLMPPYIILPQQLQRLTAAVNRAV 421
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 305 bits (783), Expect = 2e-99
Identities = 108/420 (25%), Positives = 185/420 (44%), Gaps = 47/420 (11%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNM 136
V+ +G L D+EG E LD +G+ +G+G + + Q L +
Sbjct: 36 EGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFK 95
Query: 137 YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
+P I LA++L + D VFF+ G+EAN+ I+ R + ++ K T +
Sbjct: 96 TTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEK---TVII 152
Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV---------------EYG-----N 234
S N++HG T+ + AL + ++P V+ + E+G
Sbjct: 153 SRKNAYHGSTVASSALGGMAGMHAQS-GLIPDVHHINQPNWWAEGGDMDPEEFGLARARE 211
Query: 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
+E + + AA EP+QG GG+ A + ++ CD LL+ DEV CG GR
Sbjct: 212 LEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGR 271
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--HGSTFAGSPLV 351
TG + + GI P IMT+AK L+ G PIG ++V ++VA I + HG T++G P+
Sbjct: 272 TGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVA 331
Query: 352 CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE------ 405
A+ L + L V + + + L +P V + + +G++ I
Sbjct: 332 AAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKA 391
Query: 406 ----FDVS----ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
F + C + L++ G+ + + PPL+I+ E+D+ + K+L
Sbjct: 392 SRAKFASEPGTIGYICRERCFANNLIMRHV--GDRMIISPPLVITPAEIDEMFVRIRKSL 449
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 297 bits (763), Expect = 1e-96
Identities = 122/417 (29%), Positives = 179/417 (42%), Gaps = 43/417 (10%)
Query: 77 YNRAPVVLASGKGCKLY---DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV 133
+PVV + G L D + E LD S GHG +A+ Q V+ HV
Sbjct: 51 EAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV 110
Query: 134 SNMYYSI---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
M+ + P LAK LV + A D VFFS++G+ + E A K A ++ R K
Sbjct: 111 --MFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGK- 167
Query: 189 PATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVEY-------GNIEATRK 240
+++ +HG T A+++ S + V+ F A
Sbjct: 168 --RRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEA 225
Query: 241 LIQ--PGKTAAVFVEPI-QGEGG--IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
+ G+ AAV VEP+ QG GG + +L LRD C LL+FDE+ G GRT
Sbjct: 226 QLAQHAGELAAVVVEPVVQGAGGMRFHDP--RYLHDLRDICRRYEVLLIFDEIATGFGRT 283
Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSP 349
G L+A +H G+ PDIM + K L GG L + A L T VA I+ G HG TF +P
Sbjct: 284 GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANP 343
Query: 350 LVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--D 407
L C ++A ++ + + +++ L P V DVR G I IE
Sbjct: 344 LACAVSVASVELLLGQDWRTRITELAAGLTAGL-DTARALPAVTDVRVCGAIGVIECDRP 402
Query: 408 VSATPVVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462
V A D G+ + N+V +PP I + E+ Q + + ++ S
Sbjct: 403 VDLAVATPAALDRGVWLRPF----RNLVYAMPPYICTPAEITQITSAMVEVARLVGS 455
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 1e-77
Identities = 87/476 (18%), Positives = 163/476 (34%), Gaps = 104/476 (21%)
Query: 79 RAPVVLASGKGCKLYDAEG----REYLDLSSGIAVNALGHGDADWI-KAVVDQANVLTHV 133
+ G+ +Y A + D + + + + A HV
Sbjct: 357 VTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHV 416
Query: 134 SNMYYSI---PQIELAKRLVA---CSFADRVFFSNTGTEANEAAIKFARKFQR------H 181
M+ P ++ A+ L+ +A RV+FS+ G+ A E A+K A +
Sbjct: 417 --MFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCE 474
Query: 182 SNPDSKEPATEFVSFTNSFHG---------------RTMGALALTSK------------- 213
+ + K + ++ S+HG + T +
Sbjct: 475 ATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 534
Query: 214 --------EHYRSPFEPVMPGVNFVEYGN-------------------IEATRKLIQPGK 246
E + + E + ++ + Q
Sbjct: 535 GSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAH 594
Query: 247 TAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
A+ +EP+ G GG++ F + L + C + ++FDEV G R G E G
Sbjct: 595 VGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLG 654
Query: 306 IFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGSTFAGSPLVCNAAIA 357
PDI AK L GG +P+ L T+ V + GD HG +++ + C A
Sbjct: 655 CKPDIACFAKLLTGGMVPLAVTLATDAVFDSF-SGDSKLKALLHGHSYSAHAMGCATAAK 713
Query: 358 VLDKISNPAFLASVSKKG----HYFKETLKQKLARNPHVKDVRGLGLIIGIE-------- 405
+ +P +++ +G + E L Q+++ + V+ V +G + +E
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNS 773
Query: 406 --FDVSATPVVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+ A ++ R+ G+ L GNV+ L+ S + + + L K L
Sbjct: 774 GYASLYAKSLLIMLREDGIFTRPL----GNVIYLMCGPCTSPEICRRLLTKLYKRL 825
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-48
Identities = 107/431 (24%), Positives = 154/431 (35%), Gaps = 74/431 (17%)
Query: 20 SGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNN---KEVMEAEKKLLVGT 76
SG + R N P + AS E A + R+N E ++ + G
Sbjct: 12 SGLVPRGSHMNEPIGEPGRSPASDTAEKAQAIAAARNTFARDNPVSAGHHERARRSMPGG 71
Query: 77 YN---RA----PVVLASGKGCKLYDAEGREYLD--LSSGIAVNALGHGDADWIKAVVDQA 127
P+V+A G G + D +G Y++ + GH AV
Sbjct: 72 NTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGL--FGHSHPVIRAAVERAL 129
Query: 128 NVLTHVSNMYYSIP---QIELAKRLVAC--SFADRVFFSNTGTEANEAAIKFARKF-QRH 181
V + S + A+ + S D V F+N+GTEAN A+ A R
Sbjct: 130 AVGLN-----LSTQTENEALFAEAVCDRFPS-IDLVRFTNSGTEANLMALATATAITGR- 182
Query: 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF--------VEYG 233
++F +HG G L S Y
Sbjct: 183 ---------KTVLAFDGGYHG---GLLNFAS------------GHAPTNAPYHVVLGVYN 218
Query: 234 NIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
++E T L++ AA+ VEP+ G GG A + FL LR GALL+FDEV
Sbjct: 219 DVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT- 277
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA----ALVTEKVASAIN---YGDHGST 344
R A E GI D+ TL K + GG+ GA + E+ A + H T
Sbjct: 278 -SRLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFA--HAGT 334
Query: 345 FAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404
F + L +A A L +I + +S G F+ L + N GLG + I
Sbjct: 335 FNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTI 394
Query: 405 EFDVSATPVVD 415
F S P+
Sbjct: 395 HF--SRAPIRS 403
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 1e-45
Identities = 87/394 (22%), Positives = 142/394 (36%), Gaps = 67/394 (17%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA----PVVLASGKGCKLYDAEGREYLD--LSSGIAVNA 111
+ + + ++ RA + ++ +G D +G YLD G V
Sbjct: 13 GSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALV-- 70
Query: 112 LGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTGTEA 167
LGHG A+ + + Y+ ++ A+R+VA ++ F+ +GTE
Sbjct: 71 LGHGHPRVNAAIAEALSHGVQ-----YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTET 125
Query: 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----MGALALTSKEHYRSPFEPV 223
A++ AR F + F +HG G +
Sbjct: 126 TLLALRVARAFTGRR---------MILRFEGHYHGWHDFSASGYNSHF--------DGQP 168
Query: 224 MPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273
PGV + +IE R++ AA EP+ G+ + FL+
Sbjct: 169 APGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGA 228
Query: 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA----ALVT 329
+ GAL + DEV G R G + PD+ LAK AGGLP G V
Sbjct: 229 ELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVM 287
Query: 330 EKVASAINYGD----HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK 385
++ D H TF G+P+ AAIA +D I A ++ G + +E +
Sbjct: 288 GVLSRG---SDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHL 344
Query: 386 LARN--PHVKDVRG--LGLIIGIEFDVSATPVVD 415
AR + R L+ G+ + + T +
Sbjct: 345 FARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSIT 378
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 5e-44
Identities = 96/400 (24%), Positives = 163/400 (40%), Gaps = 80/400 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA--------PVVLASGKGCKLYDAEGREYLD--LSSGI 107
++ + + + +VG N R+ P+ + GKG +D +G +Y+D + G
Sbjct: 7 KSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGP 66
Query: 108 AVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC--SFADRVFFSN 162
+ GH KA+ A Y P +++ AK L + D+V F N
Sbjct: 67 II--TGHAHPHITKAITTAAENGVL-----YGTPTALEVKFAKMLKEAMPA-LDKVRFVN 118
Query: 163 TGTEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEH 215
+GTEA I+ AR + R T+ + F +HG + L T
Sbjct: 119 SGTEAVMTTIRVARAYTGR----------TKIMKFAGCYHGHSDLVLVAAGSGPST---- 164
Query: 216 YRSPF-EPVMPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSA 264
P GV + V + N+E ++ + + AA+ VEPI G GI
Sbjct: 165 ----LGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEP 220
Query: 265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIG 324
FL+ + + +AGAL+++DEV R Y A + G+ PD+ L K + GGLPIG
Sbjct: 221 KPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGLPIG 279
Query: 325 A----ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAFLASVSKKG 375
A + E+VA G T AG+P + IA L+ + + + G
Sbjct: 280 AYGGKKEIMEQVAPL------GPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELG 333
Query: 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVD 415
++ + ++ A++ + L + + F + + D
Sbjct: 334 ATLEKGILEQAAKHNIDITLNRLKGALTVYF--TTNTIED 371
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 1e-43
Identities = 89/396 (22%), Positives = 146/396 (36%), Gaps = 75/396 (18%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-----PVVLASGKGCKLYDAEGREYLD--LSSGIAVN 110
++ + E K+L G N RA P + G+G LY +G +D L+ G +
Sbjct: 11 KSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLI- 69
Query: 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC--SFADRVFFSNTGT 165
LGH ++AV + Y P ++ LA++++ + F N+GT
Sbjct: 70 -LGHKHPRVLEAVEEALARGWL-----YGAPGEAEVLLAEKILGYVKR-GGMIRFVNSGT 122
Query: 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHYRSP 219
EA AI+ AR + + F +HG L A
Sbjct: 123 EATMTAIRLARGYTGRD---------LILKFDGCYHGSHDAVLVAAGSAAAH-------- 165
Query: 220 F-EPVMPGV--NF------VEYGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYSATKEF 268
+ P GV Y ++EA ++ + A V VEP+ G+ +EF
Sbjct: 166 YGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREF 225
Query: 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA--- 325
L L+ ++GALL+ DEV G R G A ++ I DI+ L K + GG P+GA
Sbjct: 226 LAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAG 284
Query: 326 -ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379
V + G TF P+ A +A L + + + +
Sbjct: 285 SREVMSLLTPQ------GKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALE 338
Query: 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVD 415
E + L R + + ++ + V +
Sbjct: 339 EAASEVLDRTGLPYTINRVESMMQLFI--GVEEVSN 372
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 5e-43
Identities = 101/398 (25%), Positives = 153/398 (38%), Gaps = 77/398 (19%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIA 108
+ E+ A +KL+ G + RA P+V K +D +G Y+D + G A
Sbjct: 5 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTG 164
+ GH + I+A+ + P + LA+ + + V F N+G
Sbjct: 65 I--CGHAHPEVIEALKVAME-----KGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSG 117
Query: 165 TEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHYR 217
TEA A ++ R + R + + F +HG L T
Sbjct: 118 TEACMAVLRIMRAYTGR----------DKIIKFEGCYHGHADMFLVKAGSGVAT------ 161
Query: 218 SPF-EPVMPGV--NF------VEYGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYSATK 266
P PGV Y ++EA + L PG+ A V +EPI G G
Sbjct: 162 --LGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 219
Query: 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA- 325
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+GA
Sbjct: 220 GFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAY 278
Query: 326 ---ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHY 377
+ + VA A G T +G+PL A I L+ + P + +
Sbjct: 279 GGKREIMQLVAPA------GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKR 332
Query: 378 FKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVD 415
+ L H + + G F + PV +
Sbjct: 333 LSDGLLAIAQETGHAACGGQVSGMFGFFF--TEGPVHN 368
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 6e-42
Identities = 98/398 (24%), Positives = 162/398 (40%), Gaps = 76/398 (19%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIA 108
++ + ++L+ G N RA P+ + G L+D +G+ Y+D S G
Sbjct: 6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPM 65
Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTG 164
+ LGH +AV++ + + P ++++A+ + D V N+G
Sbjct: 66 I--LGHNHPAIRQAVIEAVE-----RGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSG 118
Query: 165 TEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHYR 217
TEA +AI+ AR + R + + F +HG L ALT
Sbjct: 119 TEATMSAIRLARGYTGR----------DKIIKFEGCYHGHADCLLVKAGSGALT------ 162
Query: 218 SPF-EPVMPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATK 266
+P PGV +F Y ++ + R+ + P + A + VEP+ G
Sbjct: 163 --LGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLP 220
Query: 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA- 325
EFL LR CD+ GALL+ DEV G R A ++Y + PD+ L K + GG+P+GA
Sbjct: 221 EFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAF 279
Query: 326 ---ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHY 377
V +A G T +G+P+ A A L +IS ++++
Sbjct: 280 GGRREVMNALAPT------GPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDS 333
Query: 378 FKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVD 415
L+ V +G + G+ F +A V
Sbjct: 334 LATGLRHAAKEENIPLVVNHVGGMFGLFF-TNADTVTC 370
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 104/399 (26%), Positives = 165/399 (41%), Gaps = 80/399 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIA 108
+ E + L+ G N RA P+ + GKG K+YD +G EY+D S G
Sbjct: 6 KSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPL 65
Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC--SFADRVFFSNT 163
+ GH + ++A+ A + P + +LAK ++ S + V N+
Sbjct: 66 I--HGHANDRVVEALKAVAE-----RGTSFGAPTEIENKLAKLVIERVPS-IEIVRMVNS 117
Query: 164 GTEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHY 216
GTEA +A++ AR + R + + F +HG L T
Sbjct: 118 GTEATMSALRLARGYTGR----------NKILKFIGCYHGHGDSLLIKAGSGVAT----- 162
Query: 217 RSPF-EPVMPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSAT 265
P PGV V Y ++E+ + + A V VEP+ G G+
Sbjct: 163 ---LGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQ 219
Query: 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA 325
FL+ LR+ + GALL+FDEV G R Y +YG+ PD+ L K + GGLP+GA
Sbjct: 220 PGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGA 278
Query: 326 ----ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGH 376
A + +VA + G T +G+PL A L ++ P +K
Sbjct: 279 YGGKAEIMRQVAPS------GPIYQAGTLSGNPLAMAAGYETLVQL-TPESYVEFERKAE 331
Query: 377 YFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVD 415
+ L++ ++ + G +IGI F + PV++
Sbjct: 332 MLEAGLRKAAEKHGIPHHINRAGSMIGIFF--TDEPVIN 368
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 1e-39
Identities = 111/399 (27%), Positives = 171/399 (42%), Gaps = 79/399 (19%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIA 108
++ + K+ + G + RA P L G+G ++DA+G YLD S G
Sbjct: 5 ISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPL 64
Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTG 164
+ LGH + V + + + P ++ LAK++ F D V F N+G
Sbjct: 65 I--LGHAHPKVLARVRETLE-----RGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSG 117
Query: 165 TEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHYR 217
TEA +A++ AR + R V F ++HG G L ALT
Sbjct: 118 TEATMSALRLARGYTGR----------PYIVKFRGNYHGHADGLLVEAGSGALT------ 161
Query: 218 SPF-EPVMPGV--NF------VEYGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYSATK 266
P GV + +EY + E R+++ + + AA+ EP+ G G+ T+
Sbjct: 162 --LGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTE 219
Query: 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA- 325
+FL+ L + G LL+ DEV G R + A E G+ PD++TL K L GGLP A
Sbjct: 220 DFLKALHE-AKAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGLPAAAY 277
Query: 326 ---ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGH 376
+ EKVA G T +G+PL A +A L+ + NP + A + G
Sbjct: 278 AGRREIMEKVAPL------GPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGA 331
Query: 377 YFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVD 415
+ LK+ L V +G +I + F + PVV
Sbjct: 332 RLEAGLKEVLKEKGLPHTVNRVGSMITVFF--TEGPVVT 368
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 44/346 (12%), Positives = 91/346 (26%), Gaps = 51/346 (14%)
Query: 156 DRVFFSNTGTEANEAAIK-FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
D + ++ G A + Q+ + + F T + H G A+
Sbjct: 92 DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVT 151
Query: 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274
E + ++ A+ G + L+ + +
Sbjct: 152 EKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYE 211
Query: 275 ACDDAGALLVFDEVQCG-------------LGRTGYLWAHEHYGIFPDIMTLAKPLAGGL 321
G +V D + T + Y D +T++ L
Sbjct: 212 IAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYA-DALTMSAKKDPLL 270
Query: 322 PIGAALVT---EKVASAI----NYGDHGSTFAGSPLVCNAAIAV-LDKISNPAFLASVSK 373
IG + E++ + + T+ G AA+ L++ + +L
Sbjct: 271 NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIG 330
Query: 374 KGHYFKETLKQKLARNPHVKDVRGLGLII----------GIEFDVSATPVVDAC------ 417
+ Y + L++ A P G + + G +F A
Sbjct: 331 QVKYLGDRLRE--AGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRA 388
Query: 418 ---------RDSGLLVLTAGKGNVVRL-VPPLIISEQELDQAVEIL 453
RD +RL + + + +D + L
Sbjct: 389 VEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADAL 434
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.98 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.98 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.98 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.98 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.97 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.97 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.97 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.97 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.97 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.97 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.97 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.97 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.97 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.97 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.97 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.97 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.97 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.97 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.97 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.97 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.97 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.97 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.97 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.97 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.96 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.96 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.96 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.96 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.96 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.96 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.96 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.96 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.96 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.96 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.95 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.95 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.95 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.95 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.95 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.95 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.95 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.95 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.95 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.95 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.95 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.95 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.95 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.94 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.94 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.94 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.94 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.94 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.94 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.94 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.94 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.94 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.94 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.94 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.94 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.94 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.93 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.93 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.93 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.93 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.93 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.93 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.93 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.93 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.93 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.93 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.93 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.93 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.93 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.92 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.92 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.92 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.92 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.92 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.92 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.92 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.92 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.92 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.92 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.92 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.92 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.91 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.91 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.91 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.91 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.91 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.91 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.91 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.91 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.9 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.9 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.9 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.9 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.9 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.9 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.89 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.89 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.89 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.89 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.88 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.88 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.87 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.87 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.87 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.86 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.86 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.85 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.85 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.85 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.85 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.84 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.84 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.84 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.83 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.83 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.82 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.82 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.81 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.81 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.78 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.77 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.77 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.75 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.75 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.74 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.74 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.73 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.71 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.71 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.67 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.67 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.65 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.62 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.56 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.48 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.48 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.98 |
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-72 Score=568.19 Aligned_cols=390 Identities=33% Similarity=0.541 Sum_probs=343.1
Q ss_pred chHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCC
Q 012368 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYY 138 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~ 138 (465)
.+++++++..++...++. ++|++++|++|+|+||.|||+||||+++++++++||+||+|++|+.+|++++.+... ..+
T Consensus 26 ~s~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~ 105 (456)
T 4atq_A 26 KSQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTP 105 (456)
T ss_dssp HHHHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccC
Confidence 566666666666555443 579999999999999999999999999999999999999999999999998766533 345
Q ss_pred CHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012368 139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
++...+|+++|.+..+ .++++|+|||+|||+.|+|+|+.+|+ |++||.++++|||++.+++++++...
T Consensus 106 ~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~---------r~~ii~~~~~yHG~t~~als~t~~~~ 176 (456)
T 4atq_A 106 YEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATG---------RDAVVAFDHAYHGRTNLTMALTAKAM 176 (456)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred cHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhc---------CCeEEEEecccCCccccccccccCcc
Confidence 6778899999999885 67899999999999999999999985 88999999999999999988776543
Q ss_pred -cCCCCCCCCCCceEeeCC-----------CHH-------HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 216 -YRSPFEPVMPGVNFVEYG-----------NIE-------ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 216 -~~~~~~~~~~~~~~~~~~-----------d~~-------~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+...+.+..+++..+|++ +.+ .+++.+.++++++||+||+++++|+++|+++||++|+++|
T Consensus 177 ~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc 256 (456)
T 4atq_A 177 PYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWA 256 (456)
T ss_dssp TTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred ccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHH
Confidence 444566677777777653 122 3344444568999999999999999999999999999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHH
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~ 356 (465)
++||++||+|||+|||||+|.+|+++++++.|||+|++|++|||+|+|++++++++++.+.+..|++||++||++|+|++
T Consensus 257 ~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaal 336 (456)
T 4atq_A 257 KEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAAL 336 (456)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHH
T ss_pred hhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcC-----CCceeeeccceEEEEEecCC---------hHHHHHHHHHCCc
Q 012368 357 AVLDKISNPAFLASVSKKGHYFKETLKQKLARN-----PHVKDVRGLGLIIGIEFDVS---------ATPVVDACRDSGL 422 (465)
Q Consensus 357 a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~g~~~~i~~~~~---------~~~~~~~l~~~Gv 422 (465)
++|++++++++.+++++.+++++++|+++..++ +.+..++|.|+|+++++..+ ..++...|+++|+
T Consensus 337 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gv 416 (456)
T 4atq_A 337 AAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGV 416 (456)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTE
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999998775 56889999999999998311 3568889999999
Q ss_pred eEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 423 LVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 423 ~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+++. ++++||+||+++|++++++++++|+++|+.
T Consensus 417 l~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 417 IILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9988764 689999999999999999999999999875
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-73 Score=570.55 Aligned_cols=397 Identities=25% Similarity=0.356 Sum_probs=348.1
Q ss_pred ccccccccceeeeccccccCccchhccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeC
Q 012368 16 PLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDA 95 (465)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~ 95 (465)
.+.+.. .+|. .++| .|.++ |++|++++|||++++++. |.++|++++|++|+|+||+
T Consensus 29 ~~~~~~--~~~~-----~~~p----~s~~~-~~~a~~~~pgg~~~~~~~------------~~~~P~~i~~a~G~~l~D~ 84 (454)
T 4ao9_A 29 ALADAY--RRFT-----DANP----ASQRQ-FEAQARYMPGANSRSVLF------------YAPFPLTIARGEGAALWDA 84 (454)
T ss_dssp HHHHHH--HHHH-----HHCH----HHHHH-HHHHTTTSGGGCSSGGGC------------CSSCCCEEEEEETTEEEET
T ss_pred hHHHHH--HHHh-----hcCc----HhHHH-HHHHhhhCCCCCCCCccc------------cCCCCccEEEeecCEEEEC
Confidence 344444 5566 6777 45556 999999999999988863 4578999999999999999
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKF 174 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~ 174 (465)
|||+||||+++++++++||+||+|++|+.+|+++..+. ..++....+++++|++.++ .++|+|+|||+|||+.|+|+
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~--~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~Aikl 162 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINL--TGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTA 162 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCC--CSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCc--cCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHH
Confidence 99999999999999999999999999999999886542 2344557899999999886 89999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEE
Q 012368 175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFV 252 (465)
Q Consensus 175 a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ 252 (465)
++.||+ |++||.|+++|||++....+.++... ...+...+|+||+++++++++ .+++++||+
T Consensus 163 Ar~~tg---------r~~ii~~~~~yHG~t~~~~~~~~~~~-------~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIv 226 (454)
T 4ao9_A 163 ALHFTG---------RRKIVVFSGGYHGGVLGFGARPSPTT-------VPFDFLVLPYNDAQTARAQIERHGPEIAVVLV 226 (454)
T ss_dssp HHHHHT---------CCEEEEETTCBCSTTCBBSSSBCTTS-------CCSEEEEECTTCHHHHHHHHHHTGGGEEEEEE
T ss_pred HHhccc---------CCeEEEEeCCcCCccccccccccCcc-------CCCCcccCCCchHHHHHHHHhhcCCceEEEEe
Confidence 999985 88999999999999987766543221 123456789999999999997 457999999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHH
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV 332 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i 332 (465)
||+++++|+++|+++||++|+++|++||++||+|||+| ||+|.+++++++++.||++|++|++|||+|+|++++++++
T Consensus 227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei 304 (454)
T 4ao9_A 227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADV 304 (454)
T ss_dssp CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHH
T ss_pred ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCCCcceeeeeHHHH
Confidence 99999999999999999999999999999999999999 5999999999999999999999999999999999999999
Q ss_pred HhhccCC----CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC
Q 012368 333 ASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 333 ~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~ 408 (465)
++.+.+. .|++||++||++|+|++++|+.++++++++++++++++|+++|+++..+++.+..+++.|+|+++++..
T Consensus 305 ~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~ 384 (454)
T 4ao9_A 305 MALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQ 384 (454)
T ss_dssp HGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCC
T ss_pred HHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEec
Confidence 9998753 588999999999999999999999999999999999999999999999999889999999999999821
Q ss_pred ------------C---hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 409 ------------S---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 409 ------------~---~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+ ...++..|+++||++.|.+ ++.+++.+|++|||+++++|++++.++.
T Consensus 385 ~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~-----~~~~s~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 385 GDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG-----FVVLSLPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp SCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC-----EEECCTTCCHHHHHHHHHHHHHHHHHSG
T ss_pred CCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC-----CEEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 1 1357778999999998764 3467888999999999999999998764
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-70 Score=556.75 Aligned_cols=394 Identities=26% Similarity=0.449 Sum_probs=341.7
Q ss_pred hHHHHHHHHhccccccCC-------CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc
Q 012368 62 NKEVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134 (465)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~ 134 (465)
.+.+.+++.++.+++|.. .|++|+||+|+||||.|||+||||.++++++++||+||+|.+|+.+|++++.+..
T Consensus 24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~ 103 (473)
T 4e3q_A 24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH 103 (473)
T ss_dssp CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC
T ss_pred cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc
Confidence 345666777888888764 4899999999999999999999999999999999999999999999999875432
Q ss_pred C--CCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc
Q 012368 135 N--MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 135 ~--~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~ 210 (465)
. ...+++..+|+++|++..+ .++|+|+|||+|||+.|+|+|+.|+..++.+ ++.+||.++++|||.+.+++++
T Consensus 104 ~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~a~s~ 180 (473)
T 4e3q_A 104 AFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKP---QKRKILTRWNAYHGVTAVSASM 180 (473)
T ss_dssp CCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHH
T ss_pred ccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CcceEEEeeceECCCccccccc
Confidence 2 3356778899999999986 6799999999999999999999987655543 5789999999999999999998
Q ss_pred cCCCCcCCCCCCCCCCceEeeCCC------------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHH
Q 012368 211 TSKEHYRSPFEPVMPGVNFVEYGN------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
++.+. ...+.+..+++..+++++ .+++++.+. ++++++||+||+++++|+++|+++||
T Consensus 181 tg~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl 259 (473)
T 4e3q_A 181 TGKPY-NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYF 259 (473)
T ss_dssp SCCGG-GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHH
T ss_pred ccccc-ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHH
Confidence 87653 333444445555554431 234555554 45799999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhcc-------CCCC
Q 012368 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-------YGDH 341 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~-------~~~~ 341 (465)
++|+++|++||++||+|||+|||||+|.+|+++++++.||++|++|+++|| +|+|++++++++++.+. +..|
T Consensus 260 ~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~h 339 (473)
T 4e3q_A 260 QAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPH 339 (473)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhcccccccccccc
Confidence 999999999999999999999999999999999999999999999999998 99999999999988763 3468
Q ss_pred cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--C-----------
Q 012368 342 GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--V----------- 408 (465)
Q Consensus 342 ~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~----------- 408 (465)
++||++||++|+|++++|+.++++++++++++++++|+++|+++. +++.+..+++.|+|+++++. .
T Consensus 340 g~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~ 418 (473)
T 4e3q_A 340 GFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLS 418 (473)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGC
T ss_pred CCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccccccccHH
Confidence 999999999999999999999999999999999999999999874 56788999999999999982 1
Q ss_pred ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 409 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
....+.+.|+++||++.+.+ +.+||+||+++|++|+|+++++|+++++++.+
T Consensus 419 ~~~~~~~~~~~~Gll~~~~g--~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 419 VSERIANTCTDLGLICRPLG--QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp HHHHHHHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCcEEEecC--CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 13568899999999999876 78999999999999999999999999988754
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-64 Score=515.49 Aligned_cols=393 Identities=25% Similarity=0.456 Sum_probs=344.0
Q ss_pred HHHHHHHhccccccC-------CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-
Q 012368 64 EVMEAEKKLLVGTYN-------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN- 135 (465)
Q Consensus 64 ~~~~~~~~~~~~~~~-------~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~- 135 (465)
++.+...++.|++|. ..|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~ 92 (476)
T 3i5t_A 13 AVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW 92 (476)
T ss_dssp CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT
T ss_pred HHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC
Confidence 344455556666543 258999999999999999999999999999999999999999999999998765444
Q ss_pred CCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 136 MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 136 ~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
.++++...+|+++|++.++ .++|+|+|||+||++.|+++++.+....+.. ++++||+++++|||++..++++++.
T Consensus 93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~---~~~~vi~~~~~yHg~~~~~~~~~~~ 169 (476)
T 3i5t_A 93 YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRP---QKKRIIVRYDGYHGSTALTAACTGR 169 (476)
T ss_dssp TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHTCCC
T ss_pred ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEcCCcCcCChhhccccCC
Confidence 5778889999999999985 7899999999999999999999874332221 4789999999999999999999888
Q ss_pred CCcCCCCCCCCCCceEeeCCC----------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 012368 214 EHYRSPFEPVMPGVNFVEYGN----------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~ 274 (465)
+.++..+.+..+++.+++++. +++|+++++ ++++++||+||+++++|.++++++||++|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~ 249 (476)
T 3i5t_A 170 TGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKA 249 (476)
T ss_dssp GGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred hhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence 877777777777777666332 789999886 2578999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCCCCCCcccccc-ccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-------CCcCCC
Q 012368 275 ACDDAGALLVFDEVQCGLGRTGYLWAHE-HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-------DHGSTF 345 (465)
Q Consensus 275 l~~~~g~llI~DEv~~g~gr~g~~~~~~-~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-------~~~~t~ 345 (465)
+|++||++||+||||+||||+|.+++++ ++++.||++||||++++| +|+|++++++++++.+.+. .+++||
T Consensus 250 lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~ 329 (476)
T 3i5t_A 250 ICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY 329 (476)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred HHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence 9999999999999999999999988888 899999999999999999 9999999999999998753 678999
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHH
Q 012368 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATP 412 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~ 412 (465)
++||++|+|++++|+.++++++.++++++++++++.|+++ ..+|.+..+++.|+|+++++... ...
T Consensus 330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~ 408 (476)
T 3i5t_A 330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASL-RDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLK 408 (476)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceeEEEEecCccccccccchhHHHHH
Confidence 9999999999999999877889999999999999999854 57788889999999999998422 457
Q ss_pred HHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 413 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
+.+.|+++||++.+.+ +++||+|++++|++++++++++|+++++++.+
T Consensus 409 ~~~~l~~~Gv~v~~~g--~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 409 IDERCFELGLIVRPLG--DLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp HHHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999876 79999999999999999999999999987653
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-64 Score=514.98 Aligned_cols=394 Identities=27% Similarity=0.465 Sum_probs=342.2
Q ss_pred chHHHHHHHHhccccccCC-------CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc-
Q 012368 61 NNKEVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH- 132 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~- 132 (465)
+.+.+.+...++.+++|.. .|+++++++|+++||.||++||||++++++++|||+||+|++|+.++++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~ 90 (472)
T 3hmu_A 11 PTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYY 90 (472)
T ss_dssp CHHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccc
Confidence 3455666667777877653 68999999999999999999999999999999999999999999999988652
Q ss_pred -ccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc
Q 012368 133 -VSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA 209 (465)
Q Consensus 133 -~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~ 209 (465)
....++++...+|+++|++.++ .++|+|+|||+||++.|+++++.++...+.+ ++++||+++++|||++..+++
T Consensus 91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~---~~~~ii~~~~~yHg~t~~~~~ 167 (472)
T 3hmu_A 91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQP---EKTVIISRKNAYHGSTVASSA 167 (472)
T ss_dssp CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEcCcCCCccHHhhh
Confidence 2335677889999999999985 6899999999999999999999987544432 578999999999999999998
Q ss_pred ccCCCCcCCCCCCCCCCceEeeCC------C-----------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHH
Q 012368 210 LTSKEHYRSPFEPVMPGVNFVEYG------N-----------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~------d-----------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
+++.+.++..+. ..+++..++.+ | +++|+++++ ++++++||+||+++++|.++++++||
T Consensus 168 ~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l 246 (472)
T 3hmu_A 168 LGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYW 246 (472)
T ss_dssp HSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHH
T ss_pred ccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHH
Confidence 887766555555 45566655532 2 788998886 25789999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC--CCCcCCCC
Q 012368 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY--GDHGSTFA 346 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~--~~~~~t~~ 346 (465)
++|+++|++||++||+||||+||||+|..++++++++.||++||||++++| +|+|++++++++++.+.. ..+++||+
T Consensus 247 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~ 326 (472)
T 3hmu_A 247 PEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYS 326 (472)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred HHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCC
Confidence 999999999999999999999999999988889999999999999999987 899999999999998843 36788999
Q ss_pred ChHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC--------------hH
Q 012368 347 GSPLVCNAAIAVLDKISNPAFLASVS-KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS--------------AT 411 (465)
Q Consensus 347 ~~~~~~~aa~a~L~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~--------------~~ 411 (465)
+||++|+|++++|+.++++++.++++ ++++++++.|+++ ..+|.+..+++.|+|+++++..+ ..
T Consensus 327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~ 405 (472)
T 3hmu_A 327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEAL-TDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGY 405 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG-GGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceEEEEEecCccccccccchhHHHHH
Confidence 99999999999999887788999999 9999999999664 56888889999999999998321 45
Q ss_pred HHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+.+.|+++||++.+++ +++||+|++++|++++++++++|+++++++.
T Consensus 406 ~~~~~l~~~Gv~v~~~g--~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 406 ICRERCFANNLIMRHVG--DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HHHHHHHHTTBCCEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999886 8999999999999999999999999987653
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-63 Score=508.29 Aligned_cols=393 Identities=33% Similarity=0.512 Sum_probs=348.7
Q ss_pred chHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 012368 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY 138 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~ 138 (465)
.+++++++..++...++. +.|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..++. ..++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~ 105 (453)
T 4ffc_A 26 RSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTP 105 (453)
T ss_dssp HHHHHHHHHHHHBCTTTCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSC
T ss_pred CHHHHHHHHHHhcCCCcCCCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCC
Confidence 456677777777766654 68999999999999999999999999999999999999999999999998875543 3567
Q ss_pred CHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-
Q 012368 139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE- 214 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~- 214 (465)
++...+|+++|++.++ .++|+|+|||+||++.|+++++.+++ +++||+++++|||++..++++++..
T Consensus 106 ~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g---------~~~ii~~~~~yhg~~~~~~~~~~~~~ 176 (453)
T 4ffc_A 106 YEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATG---------RPAVVAFDNAYHGRTNLTMALTAKSM 176 (453)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred CHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcC---------CCEEEEEcCccCCcchHHHhhcCCCc
Confidence 8889999999999986 57999999999999999999998763 7899999999999999998887764
Q ss_pred CcCCCCCCCCCCceEeeCC----C-------------HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 012368 215 HYRSPFEPVMPGVNFVEYG----N-------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 277 (465)
.+...+.+..+++..+|++ | +++|++.+.++++++||+||+++++|+++++++|+++|+++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~ 256 (453)
T 4ffc_A 177 PYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS 256 (453)
T ss_dssp TTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred ccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 5566666777777777765 4 4667777766689999999999999999999999999999999
Q ss_pred HhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHH
Q 012368 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA 357 (465)
Q Consensus 278 ~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a 357 (465)
+||++||+||||+|||++|..++++++++.||++||||++++|+|+||+++++++++.+.+..+.+||++||++++|+++
T Consensus 257 ~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~a 336 (453)
T 4ffc_A 257 ENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVA 336 (453)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHH
T ss_pred HcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999887889999999999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------ChHHHHHHHHHCCceEeecC
Q 012368 358 VLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLLVLTAG 428 (465)
Q Consensus 358 ~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------~~~~~~~~l~~~Gv~v~~~~ 428 (465)
+|+.++++++.++++++++++++.|++++..++.+..+++.|+|+++++.. ...++.+.|+++||++.+++
T Consensus 337 al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 416 (453)
T 4ffc_A 337 ALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCG 416 (453)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEEC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCC
Confidence 999887788999999999999999999988899888899999999998831 24578899999999999876
Q ss_pred C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 429 K-GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 429 ~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
. ++++||+|++.+|++++++++++|+++++++.+
T Consensus 417 ~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 417 TFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4 578999999999999999999999999987653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-63 Score=503.56 Aligned_cols=390 Identities=31% Similarity=0.512 Sum_probs=343.8
Q ss_pred chHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 012368 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY 138 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~ 138 (465)
.+++++++..++..+++. +.|+++++|+|+++||.||++||||+++++++++||+||+|++|+.+++++..++. ..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~ 102 (451)
T 3oks_A 23 RSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTP 102 (451)
T ss_dssp HHHHHHHHHHHHBCTTBCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSC
T ss_pred cHHHHHHHHHhhccCCcCCCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccC
Confidence 456677777777766665 68999999999999999999999999999999999999999999999998865543 3467
Q ss_pred CHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-
Q 012368 139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE- 214 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~- 214 (465)
++...+|+++|++.++ .++|+|++||+||++.|+++++.+++ +++||+++++|||++..++++++..
T Consensus 103 ~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g---------~~~ii~~~~~yhG~~~~~~~~~~~~~ 173 (451)
T 3oks_A 103 YEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTH---------KPAVVAFDHAYHGRTNLTMALTAKVM 173 (451)
T ss_dssp CHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred CHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcC---------CCeEEEEcCCcCCccHHHHHhcCCCc
Confidence 7889999999999985 57999999999999999999998774 7899999999999999999887764
Q ss_pred CcCCCCCCCCCCceEeeCC------------------CHHHHHhhc----CCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 012368 215 HYRSPFEPVMPGVNFVEYG------------------NIEATRKLI----QPGKTAAVFVEPIQGEGGIYSATKEFLQFL 272 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~------------------d~~~le~~l----~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l 272 (465)
.+...+.+..+++.++|++ +++.+++.+ .++++++||+||+++++|+++++++|+++|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l 253 (451)
T 3oks_A 174 PYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTL 253 (451)
T ss_dssp TTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred ccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHH
Confidence 5666666777788777765 133333333 346799999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHH
Q 012368 273 RDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352 (465)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~ 352 (465)
+++|++||++||+||||+|||++|..++++++++.||++||||++++|+|+|++++++++++.+.+..+.+||++||+++
T Consensus 254 ~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~ 333 (451)
T 3oks_A 254 LDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIAC 333 (451)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHH
T ss_pred HHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999998878899999999999
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------ChHHHHHHHHHCCce
Q 012368 353 NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLL 423 (465)
Q Consensus 353 ~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------~~~~~~~~l~~~Gv~ 423 (465)
+|+.++|+.++++++.++++++++++++.|++++..++.+..+++.|+|+++++.. ...++.+.|+++||+
T Consensus 334 aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 413 (451)
T 3oks_A 334 AAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVI 413 (451)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcE
Confidence 99999999887778999999999999999999988899888999999999998831 245688999999999
Q ss_pred EeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 424 VLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 424 v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.+++. ++++||+|++.+|++++++++++|++++++
T Consensus 414 v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 414 VLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 998764 578999999999999999999999998864
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-62 Score=502.38 Aligned_cols=395 Identities=25% Similarity=0.423 Sum_probs=343.6
Q ss_pred HHHHHHhccccccC---------CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--c
Q 012368 65 VMEAEKKLLVGTYN---------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--V 133 (465)
Q Consensus 65 ~~~~~~~~~~~~~~---------~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~ 133 (465)
+.+...++.+++|. +.|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~ 88 (460)
T 3gju_A 9 LNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHA 88 (460)
T ss_dssp HHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc
Confidence 44444555666553 346999999999999999999999999999999999999999999999988653 2
Q ss_pred cCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 134 SNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
...++++...+|+++|++.++ .++|+|++||+||++.|+++++.++..++.+ ++++||+++++|||++..+++++
T Consensus 89 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~ 165 (460)
T 3gju_A 89 YVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRP---EKKKIISRWRGYHGSGVMTGSLT 165 (460)
T ss_dssp CTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCCHHHhhcc
Confidence 335667889999999999874 7899999999999999999999886544332 57899999999999999999988
Q ss_pred CCCCcCCCCCCCCCCceEeeC------CC------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 212 SKEHYRSPFEPVMPGVNFVEY------GN------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~------~d------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+...++..+.+...++..+|. +| +++|+++++ ++++++|++||+++++|.+++++++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~ 245 (460)
T 3gju_A 166 GLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWE 245 (460)
T ss_dssp CCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred CCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHH
Confidence 877777667776677766652 23 688999886 257899999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhcc-------CCCCc
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-------YGDHG 342 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~-------~~~~~ 342 (465)
+|+++|++||++||+||||+||||+|..++.+++++.||++||||++++| +|+|++++++++++.+. ...++
T Consensus 246 ~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~ 325 (460)
T 3gju_A 246 KIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHG 325 (460)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCC
T ss_pred HHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccC
Confidence 99999999999999999999999999888888999999999999999988 79999999999999883 44678
Q ss_pred CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------
Q 012368 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS------------- 409 (465)
Q Consensus 343 ~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~------------- 409 (465)
.||++||++++|++++|+.++++++.++++++.+++++.|.+.+.+++.+..+++.|+|+++++..+
T Consensus 326 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (460)
T 3gju_A 326 WTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKI 405 (460)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHH
Confidence 9999999999999999998877889999999999999999988888888889999999999988311
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
..++.+.|+++||++.+.+.++++||+|++++|++++++++++|+++++++.+
T Consensus 406 ~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 406 GPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp HHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999998764489999999999999999999999999988764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-62 Score=500.70 Aligned_cols=397 Identities=31% Similarity=0.461 Sum_probs=340.9
Q ss_pred chHHHHHHHHhccccccCCC------ceEEEeeeccEEEeC-CCC--EEEecccCcccccCCCCCHHHHHHHHHHHhhcc
Q 012368 61 NNKEVMEAEKKLLVGTYNRA------PVVLASGKGCKLYDA-EGR--EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT 131 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~------p~~~~~~~G~~~~d~-dG~--~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~ 131 (465)
..+++++.+.++.+++|.+. |+++++++|+++||. ||+ +||||+++++++++||+||+|++|+.+++++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~ 108 (457)
T 3tfu_A 29 TPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN 108 (457)
T ss_dssp CHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc
Confidence 35677788888999998875 899999999999999 999 999999999999999999999999999998876
Q ss_pred ccc-CCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc
Q 012368 132 HVS-NMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208 (465)
Q Consensus 132 ~~~-~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~ 208 (465)
+.+ ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.+....+.+ ++++||+++++|||++..++
T Consensus 109 ~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~---g~~~ii~~~~~yhg~~~~~~ 185 (457)
T 3tfu_A 109 HVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLP---GKRRLMTWRGGYHGDTFLAM 185 (457)
T ss_dssp CCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHH
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCceEEEEcCCcCCccHHhh
Confidence 544 45677889999999999985 7899999999999999999999874332211 46799999999999999988
Q ss_pred cccC-CCCcCCCCCCCCCCceEeeC-------CCHHHHHhhcC--CCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHH
Q 012368 209 ALTS-KEHYRSPFEPVMPGVNFVEY-------GNIEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACD 277 (465)
Q Consensus 209 ~~~~-~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~--~~~~a~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~ 277 (465)
++++ ...+...+.+..+++.++|. +|+++|+++++ ++++++|++|| +++++|+++++++++++|+++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 265 (457)
T 3tfu_A 186 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR 265 (457)
T ss_dssp TTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred cccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 8753 44455555666667766665 47899999997 25799999999 99999999999999999999999
Q ss_pred HhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhcc---CC--CCcCCCCChHHH
Q 012368 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN---YG--DHGSTFAGSPLV 351 (465)
Q Consensus 278 ~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~---~~--~~~~t~~~~~~~ 351 (465)
+||++||+||||+||||+|.+++++++++.||++||||+++|| +|+|++++++++++.+. .. .+++||++||++
T Consensus 266 ~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a 345 (457)
T 3tfu_A 266 RYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLA 345 (457)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHH
T ss_pred HcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHH
Confidence 9999999999999999999988889999999999999999998 69999999999999884 33 678999999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCC
Q 012368 352 CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK 429 (465)
Q Consensus 352 ~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~ 429 (465)
|+|++++|+.++++++.++++++++++++.|+++. .++.+..+++.|+|+++++. .+..++.+.|+++||++.+.+
T Consensus 346 ~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~~- 423 (457)
T 3tfu_A 346 CAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFR- 423 (457)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCCCHHHHHHHHHHTTEECCCBT-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcccHHHHHHHHHHCCeEEEecC-
Confidence 99999999998778899999999999999998764 67778889999999999984 346789999999999998865
Q ss_pred CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 430 GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 430 ~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+++||+|++.+|++|+++++++|+++++++..+
T Consensus 424 -~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~~~ 456 (457)
T 3tfu_A 424 -NLVYAMPPYICTPAEITQITSAMVEVARLVGSL 456 (457)
T ss_dssp -TEEEECCCTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred -CEEEEECCCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 789999999999999999999999999876543
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-62 Score=500.32 Aligned_cols=377 Identities=28% Similarity=0.490 Sum_probs=330.6
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCCCCHHHHHHHHHHHhhcC--C
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~--~ 155 (465)
.|+++++|+|+++||.||++||||++++++++|||+||+|++|+.+++++..+ ....++++...+|+++|++.++ .
T Consensus 32 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 111 (459)
T 4a6r_A 32 GARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF 111 (459)
T ss_dssp --CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 58999999999999999999999999999999999999999999999988652 2335678889999999999985 7
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC--
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-- 233 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (465)
++|+|++||+||++.|+++++.++...+.+ ++++||+++|+|||++..++++++.+.++..+.+..+++.+++.+
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKP---EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWW 188 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCH
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCcc
Confidence 899999999999999999999886544432 588999999999999999999888777766666666677666632
Q ss_pred -------C--------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 234 -------N--------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 234 -------d--------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
| +++|+++++ ++++++|++||+++++|.++++++++++|+++|++||++||+||||+||||+
T Consensus 189 ~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~ 268 (459)
T 4a6r_A 189 YKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRT 268 (459)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 2 788999886 2578999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhcc---CCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHH
Q 012368 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN---YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~---~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~ 371 (465)
|..++.+++++.||++||||++++| +|+|++++++++++.+. ...+++||++||++++|++++|+.++++++.+++
T Consensus 269 G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 348 (459)
T 4a6r_A 269 GEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV 348 (459)
T ss_dssp SSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHH
Confidence 9888888999999999999999987 89999999999999886 5567789999999999999999988778899999
Q ss_pred H-HHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHHHHHHCCceEeecCCCCEEEEec
Q 012368 372 S-KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRLVP 437 (465)
Q Consensus 372 ~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~~l~~~Gv~v~~~~~~~~lRi~~ 437 (465)
+ ++++++++.|.+.+..++.+..+++.|+|+++++..+ ..++.+.|+++||++.+++ +++||+|
T Consensus 349 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRi~~ 426 (459)
T 4a6r_A 349 KDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG--DHIVSAP 426 (459)
T ss_dssp HHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET--TEEEECC
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC--CEEEEEC
Confidence 9 9999999999666677888889999999999988321 5678899999999999976 7999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 438 PLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 438 ~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++++|++++++++++|+++++++.
T Consensus 427 ~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 427 PLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-61 Score=492.38 Aligned_cols=393 Identities=30% Similarity=0.492 Sum_probs=319.2
Q ss_pred HHHHHHhccccccC------CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCC
Q 012368 65 VMEAEKKLLVGTYN------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMY 137 (465)
Q Consensus 65 ~~~~~~~~~~~~~~------~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~ 137 (465)
+.+...++.++++. ..|+++++|+|+++||.||++||||+++++++++||+||+|++|+.+++++..++ ...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~ 84 (448)
T 3dod_A 5 LIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGM 84 (448)
T ss_dssp HHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSS
T ss_pred HHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccccc
Confidence 44455566666553 3689999999999999999999999999999999999999999999999886543 3456
Q ss_pred CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012368 138 YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
+++...+++++|++.++ .++|+|++||+||++.|+++++.+....+. +.+++||+++++|||++..++++++.+.
T Consensus 85 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~---~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 161 (448)
T 3dod_A 85 TNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGK---PEKQKFIAMKNGYHGDTIGAVSVGSIEL 161 (448)
T ss_dssp EEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC---TTCCEEEEEC------------------
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCC---CCCCEEEEECCCCCCccHHHHHhcCCcc
Confidence 67778999999999985 689999999999999999999987221111 1278999999999999999988887776
Q ss_pred cCCCCCCCCCCceEeeCCC----------------HHHHHhhcC--CCCeEEEEEcccC-CCCCcccCCHHHHHHHHHHH
Q 012368 216 YRSPFEPVMPGVNFVEYGN----------------IEATRKLIQ--PGKTAAVFVEPIQ-GEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~--~~~~a~vi~ep~~-~~~G~~~~~~~~l~~l~~l~ 276 (465)
+...+.+..+++..+|+++ +++|+++++ ++++++|++||++ +++|.++++++++++|+++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~ 241 (448)
T 3dod_A 162 FHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241 (448)
T ss_dssp -----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred ccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence 6666666666677776654 899999997 4578999999998 99999999999999999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-------CCCcCCCCCh
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGS 348 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~ 348 (465)
++||++||+||||+|||++|..++.+++++.||++||||++++| +|+|++++++++++.+.. ..+++||++|
T Consensus 242 ~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 321 (448)
T 3dod_A 242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGN 321 (448)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTC
T ss_pred HHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcC
Confidence 99999999999999999999988889999999999999999999 599999999999999876 5678999999
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHH
Q 012368 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVD 415 (465)
Q Consensus 349 ~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~ 415 (465)
|++++|+.++|+.++++++.++++++++++++.|.+ +..++.+..+++.|+++++++..+ ..++++
T Consensus 322 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (448)
T 3dod_A 322 QLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSL 400 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHH
Confidence 999999999999887788999999999999999999 778888888999999999998321 367899
Q ss_pred HHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 416 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 416 ~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.|+++||++.|++ +++||+|++.+|++++++++++|+++++++...
T Consensus 401 ~l~~~Gv~~~~~~--~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 401 KMRELGMLTRPLG--DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp HHHHTTEECCEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCcEEeccC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999875 789999999999999999999999999887654
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-61 Score=485.71 Aligned_cols=399 Identities=34% Similarity=0.569 Sum_probs=327.9
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 012368 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (465)
.++++.+...++....|.+.|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++++..+.+..++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~ 107 (433)
T 1z7d_A 28 TPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107 (433)
T ss_dssp CHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEH
T ss_pred cHHHHHHHHHHhcccccCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCH
Confidence 45567776667777778888999999999999999999999999999889999999999999999998765443445667
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhc-CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS-NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~-~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
...+++++|+++++.++|+|++||+||++.|+++++.++... +.. +++++||+++++|||++..++.+++.+.+...
T Consensus 108 ~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~--~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 185 (433)
T 1z7d_A 108 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIP--ENMAKIVVCKNNFSGRTLGCISASTTKKCTSN 185 (433)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC--TTCCEEEEETTC--------------------
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCC--CCCCeEEEEeCCcCCcchhhhcccCCcccccc
Confidence 789999999999999999999999999999999988653110 000 12489999999999999887777665444444
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+.|...++..+|++|+++|+++++.+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|.++
T Consensus 186 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~ 265 (433)
T 1z7d_A 186 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL 265 (433)
T ss_dssp ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch
Confidence 55666778888999999999999545789999999999999888899999999999999999999999999999999888
Q ss_pred cccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012368 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
+++.+++.||++||||++++| +|+|++++++++++.+.+..+..||++||++++++.++|+.++++++.++++++++++
T Consensus 266 ~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l 345 (433)
T 1z7d_A 266 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPF 345 (433)
T ss_dssp GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888889999999999999999 9999999999999998877788999999999999999999887678999999999999
Q ss_pred HHHHHHHHHcCCCceeeeccceEEEEEecC---ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 379 KETLKQKLARNPHVKDVRGLGLIIGIEFDV---SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
++.|+++...++.+..+++.|+++++++.. +..++.+.|+++||++.+++. +++|++|++.+|++|+++++++|++
T Consensus 346 ~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~ 424 (433)
T 1z7d_A 346 LENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHD-KTIRLTPPLCITKEQLDECTEIIVK 424 (433)
T ss_dssp HHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETT-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecCCC-CEEEEECCcCCCHHHHHHHHHHHHH
Confidence 999998766777777788999999999843 367899999999999998754 7899999999999999999999999
Q ss_pred HHHHhhh
Q 012368 456 TLPVLDS 462 (465)
Q Consensus 456 ~l~~~~~ 462 (465)
+++++.+
T Consensus 425 ~l~~~~~ 431 (433)
T 1z7d_A 425 TVKFFDE 431 (433)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9987643
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=484.35 Aligned_cols=400 Identities=23% Similarity=0.341 Sum_probs=342.2
Q ss_pred hhccccccchhhhccCCCCCCcchHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCH
Q 012368 39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117 (465)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p 117 (465)
...|.++ ++++.+++|+|++++.|.+. .+. +.|+++++++|+++||.||++||||++++++++|||+||
T Consensus 5 ~~~s~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p 74 (434)
T 3l44_A 5 FTKSEAL-HKEALEHIVGGVNSPSRSFK---------AVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHP 74 (434)
T ss_dssp CHHHHHH-HHHHHHHBGGGCSSGGGSSG---------GGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCH
T ss_pred ChhHHHH-HHHHHhhCCCCcCccccccc---------cccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCH
Confidence 3567777 99999999999987776542 122 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
+|++|+.+++.+... ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.++ ++++||++
T Consensus 75 ~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~---------~~~~vi~~ 143 (434)
T 3l44_A 75 HITKAITTAAENGVL--YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYT---------GRTKIMKF 143 (434)
T ss_dssp HHHHHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEE
T ss_pred HHHHHHHHHHHhCcC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhh---------CCCEEEEE
Confidence 999999999987432 45678889999999999984 8999999999999999999998876 47899999
Q ss_pred cCCcccCccccccccCCCCcCCCC--CCC-----CCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPF--EPV-----MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE 267 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~ 267 (465)
+++|||++..++..++........ .+. ..++..+|++|+++|+++++ ++++++|++||+++++|.++++++
T Consensus 144 ~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~ 223 (434)
T 3l44_A 144 AGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPG 223 (434)
T ss_dssp TTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTT
T ss_pred cCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHH
Confidence 999999998888766543221110 111 12566788999999999997 257899999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---CCCcCC
Q 012368 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGST 344 (465)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t 344 (465)
++++|+++|++||++||+||||+|| ++|..++.+++++.||++||||++++|+|+|++++++++++.+.+ ..+++|
T Consensus 224 ~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t 302 (434)
T 3l44_A 224 FLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGT 302 (434)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCT
T ss_pred HHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCC
Confidence 9999999999999999999999999 999888888999999999999999999999999999999998875 347789
Q ss_pred CCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------------
Q 012368 345 FAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS--------------- 409 (465)
Q Consensus 345 ~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~--------------- 409 (465)
|++|+++++|+.++|+.++++++.++++++++++++.|+++...++.+..+++.|+++++++...
T Consensus 303 ~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (434)
T 3l44_A 303 MAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEM 382 (434)
T ss_dssp TTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHH
T ss_pred CCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHH
Confidence 99999999999999999877889999999999999999998888887778899999999988211
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
..++.+.|+++||++.+++. +.+|+ ++.+|++++++++++|++++++++++
T Consensus 383 ~~~~~~~l~~~Gv~v~~~~~-~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~~~ 433 (434)
T 3l44_A 383 FGKFFKLMLQEGVNLAPSKY-EAWFL--TTEHTKEDIEYTIEAVGRAFAALADN 433 (434)
T ss_dssp HHHHHHHHHHTTEECCSSTT-CCEEC--CTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCeEEeecCC-CcEEE--ecccCHHHHHHHHHHHHHHHHHHHhc
Confidence 25688899999999998765 55666 67999999999999999999887654
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-60 Score=482.08 Aligned_cols=394 Identities=33% Similarity=0.526 Sum_probs=340.8
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 012368 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (465)
..+++++.+.++..+.|.+.|+++++++|+++||.||++||||.+++++.++||+||+|++|+.+++++..+.+..++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~ 118 (439)
T 2oat_A 39 TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 118 (439)
T ss_dssp CHHHHHHHHHHHBCCCCCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEES
T ss_pred CHHHHHHHHHHhcccccCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCH
Confidence 45667777777788888888999999999999999999999999999999999999999999999998765443345556
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhc-CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS-NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~-~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
...+++++|+++++.++|+|++||+||++.|+++++.++... +.. +++++||+++++|||++..++.+++.+.+...
T Consensus 119 ~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~--~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 196 (439)
T 2oat_A 119 VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQ--KYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 196 (439)
T ss_dssp SHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC--TTCCEEEEETTCCCCSSHHHHTTCCCHHHHTT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCC--CCCCeEEEEcCCCCCCCHhHhhcCCChhcccC
Confidence 688999999999899999999999999999999998653110 000 12489999999999999887777664444444
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+.|...++..+|++|+++|+++++.+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|..+
T Consensus 197 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~ 276 (439)
T 2oat_A 197 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 276 (439)
T ss_dssp SCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch
Confidence 55666788889999999999999645789999999999999888999999999999999999999999999999999888
Q ss_pred cccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012368 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
+++.+++.||++|+||++++| +|+|++++++++++.+.+..++.||++||++++++.++|+.++++++.++++++++++
T Consensus 277 ~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l 356 (439)
T 2oat_A 277 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIIL 356 (439)
T ss_dssp GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888899999999999999999 9999999999999999877788999999999999999999887678899999999999
Q ss_pred HHHHHHHHHcCCCceeeeccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 379 KETLKQKLARNPHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
++.|+++ .++.+..+++.|+++++++.. ...++.+.|+++||++.+.+. +++||+|++.+|++++++++++|+
T Consensus 357 ~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~ 433 (439)
T 2oat_A 357 RNELMKL--PSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHG-DIIRFAPPLVIKEDELRESIEIIN 433 (439)
T ss_dssp HHHHTTS--CTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBSSS-SEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecCCC-CEEEEECccCCCHHHHHHHHHHHH
Confidence 9988775 456666678899999999843 367899999999999998654 899999999999999999999999
Q ss_pred HHHHH
Q 012368 455 KTLPV 459 (465)
Q Consensus 455 ~~l~~ 459 (465)
+++++
T Consensus 434 ~~l~~ 438 (439)
T 2oat_A 434 KTILS 438 (439)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98864
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=486.43 Aligned_cols=394 Identities=31% Similarity=0.553 Sum_probs=340.0
Q ss_pred hHHHHHHHHhcccc---ccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCC
Q 012368 62 NKEVMEAEKKLLVG---TYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY 137 (465)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~ 137 (465)
.+++++...++.++ .|. +.|+++++|+|+++||.||++||||+++++++++||+||+|++|+.+++++..+....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~ 88 (452)
T 3n5m_A 9 TDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQ 88 (452)
T ss_dssp HHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTS
T ss_pred HHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCccccc
Confidence 45566666777777 443 57899999999999999999999999999999999999999999999998865533456
Q ss_pred CCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012368 138 YSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
+++...+++++|++.++ ...|+|++||+||++.|+++++.+....+. +++++||+++++|||++..++++++.+.+
T Consensus 89 ~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~---~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 165 (452)
T 3n5m_A 89 SHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGE---PHRYKFMSRYRGYHGNTMATMAATGQAQR 165 (452)
T ss_dssp EEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTC---TTCCEEEEETTCCCCSSHHHHHSCCCGGG
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCC---CCCCEEEEECCCcCCCCHHHHhcCCchhh
Confidence 77889999999999986 223999999999999999999977322111 14789999999999999998888887776
Q ss_pred CCCCCCCCCCceEeeC--------CC---------HHHHHhhcC---CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHH
Q 012368 217 RSPFEPVMPGVNFVEY--------GN---------IEATRKLIQ---PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDA 275 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~--------~d---------~~~le~~l~---~~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l 275 (465)
...+.+..+++.+++. +| +++|+++++ ++++++|++||+ ++ +|.++|+++++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l 244 (452)
T 3n5m_A 166 RYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHET 244 (452)
T ss_dssp TTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHH
Confidence 6666666666655543 45 899999986 357899999999 88 99889999999999999
Q ss_pred HHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC------CCCcCCCCCh
Q 012368 276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGS 348 (465)
Q Consensus 276 ~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~ 348 (465)
|++||++||+||||+||||+|..++.+.+++.||++||||++++| +|+|++++++++++.+.. ..+++|+++|
T Consensus 245 ~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~ 324 (452)
T 3n5m_A 245 CQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN 324 (452)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred HHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence 999999999999999999999988899999999999999999999 999999999999999843 2477899999
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--CC---------hHHHHHHH
Q 012368 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VS---------ATPVVDAC 417 (465)
Q Consensus 349 ~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~---------~~~~~~~l 417 (465)
|++++|++++|+.++++++.++++++++++++.|++++..++.+..+++.|+++++++. .. ..++++.|
T Consensus 325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 404 (452)
T 3n5m_A 325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC 404 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence 99999999999988778899999999999999999988888888889999999999872 11 24688899
Q ss_pred HHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 418 RDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 418 ~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+++||++.+++. ++++||+|++.+|++++++++++|++++++
T Consensus 405 ~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 405 KEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp HHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999998762 489999999999999999999999998864
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=483.60 Aligned_cols=398 Identities=23% Similarity=0.367 Sum_probs=342.8
Q ss_pred chhccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCH
Q 012368 38 VAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117 (465)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p 117 (465)
+...|.++ ++++.+++|+|++++.+.+. .+++.|+++++++|+++||.||++||||++++++++|||+||
T Consensus 3 ~~~~s~~~-~~~~~~~~~~g~~~~~~~~~---------~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p 72 (429)
T 3k28_A 3 KFDKSIAA-FEEAQDLMPGGVNSPVRAFK---------SVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHAND 72 (429)
T ss_dssp CCHHHHHH-HHHHTTTSGGGSSSGGGGCG---------GGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCH
T ss_pred CChhHHHH-HHHHHhhcCCCcCccccccc---------ccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCH
Confidence 34567788 99999999999988877532 234789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
+|++|+.+++++..+ ..++++...+|+++|++.+ +.++|+|++||+||++.|+++++.++ ++++||++
T Consensus 73 ~v~~A~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~---------~~~~vi~~ 141 (429)
T 3k28_A 73 RVVEALKAVAERGTS--FGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYT---------GRNKILKF 141 (429)
T ss_dssp HHHHHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---------TCCEEEEE
T ss_pred HHHHHHHHHHhhCcC--cCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhh---------CCCEEEEE
Confidence 999999999987543 3567888999999999998 48999999999999999999999876 37899999
Q ss_pred cCCcccCccccccccCCCCcCCCC--CCC-----CCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPF--EPV-----MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE 267 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~ 267 (465)
+++|||++..++..++........ .+. ...+..+|++|+++|+++++ ++++++|++||+++++|.++++++
T Consensus 142 ~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~ 221 (429)
T 3k28_A 142 IGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPG 221 (429)
T ss_dssp ETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTT
T ss_pred CCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHH
Confidence 999999998887766543221111 111 12456789999999999997 357899999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC---CCcCC
Q 012368 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGST 344 (465)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t 344 (465)
++++|+++|++||++||+||||+|| ++|..++.+.+++.||++||||++++|+|+|++++++++++.+.+. .+++|
T Consensus 222 ~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t 300 (429)
T 3k28_A 222 FLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGT 300 (429)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCT
T ss_pred HHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCC
Confidence 9999999999999999999999999 9998888888999999999999999999999999999999988653 37789
Q ss_pred CCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------------
Q 012368 345 FAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS--------------- 409 (465)
Q Consensus 345 ~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~--------------- 409 (465)
|++|+++++|+.++|+.++ +++.++++++++++++.|+++...++.+..+++.|+++++++...
T Consensus 301 ~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
T 3k28_A 301 LSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQF 379 (429)
T ss_dssp TTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHH
T ss_pred CCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHH
Confidence 9999999999999999876 788999999999999999998888888888999999999987311
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..++++.|+++||++.+++. +.+|+ ++.+|++++++++++|++++++++
T Consensus 380 ~~~~~~~l~~~Gv~v~~~~~-~~~r~--~~~~t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 380 FAAYYREMVEQGVFLPPSQF-EGLFL--STVHSDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp HHHHHHHHHHTTEECCSSTT-SCBCC--CTTCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCeEEecCCC-CCEEE--ECCCCHHHHHHHHHHHHHHHHHHh
Confidence 26788899999999998764 45665 789999999999999999998754
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-60 Score=473.33 Aligned_cols=384 Identities=41% Similarity=0.746 Sum_probs=345.1
Q ss_pred HhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 012368 70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL 149 (465)
Q Consensus 70 ~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l 149 (465)
.++..+.|.+.|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..+.+..++++...+++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l 87 (395)
T 3nx3_A 8 QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNL 87 (395)
T ss_dssp CCSCBCGGGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHH
T ss_pred hhhhhhccCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999998876655556788899999999
Q ss_pred HhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceE
Q 012368 150 VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF 229 (465)
Q Consensus 150 ~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (465)
++.++.++|+|++||+||++.|+++++.++...+. ++++||+++++|||++..+..+++.+.+...+.+...++..
T Consensus 88 a~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (395)
T 3nx3_A 88 AKASALERVFFTNSGTESIEGAMKTARKYAFNKGV----KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKF 163 (395)
T ss_dssp HHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTC----TTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEE
T ss_pred HHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCC----CCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEE
Confidence 99999999999999999999999999877432221 47899999999999999888887766555555666678888
Q ss_pred eeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCccc
Q 012368 230 VEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309 (465)
Q Consensus 230 ~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pd 309 (465)
+|++|+++|+++++ +++++|+++|+++++|.++++++++++|+++|++||++||+||+|+|||++|..++.+.+++.||
T Consensus 164 ~~~~d~~~l~~~l~-~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d 242 (395)
T 3nx3_A 164 AKYNDISSVEKLVN-EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPD 242 (395)
T ss_dssp ECTTCHHHHHTTCC-TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred eCCCCHHHHHHhcc-CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCC
Confidence 99999999999997 46899999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEEecccCCCccceeeEEeCHHH-HhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012368 310 IMTLAKPLAGGLPIGAALVTEKV-ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 310 i~t~sK~lg~G~~iG~v~~~~~i-~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
++||||++++|+|+|++++++++ ++.+.+..++.++++|+++++++.++|+.++++++.++++++.+++++.|.++...
T Consensus 243 ~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (395)
T 3nx3_A 243 IMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322 (395)
T ss_dssp EEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 88888777889999999999999999998877789999999999999999998888
Q ss_pred CCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 389 NPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+..+++.|+++++++.. ...++.+.|+++||++.+++. +++||+|++.+|++++++++++|++++++
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 323 FDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENALLLISCGE-NDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp CTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 88788888999999999843 678899999999999998865 89999999999999999999999998864
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-59 Score=474.16 Aligned_cols=394 Identities=22% Similarity=0.350 Sum_probs=329.0
Q ss_pred ccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHH
Q 012368 41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120 (465)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~ 120 (465)
.|.++ ++++.+++|+|++++.+.+ ..|.+.|+++++++|+++||.||++||||+++++++++||+||+|+
T Consensus 6 ~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~ 75 (429)
T 4e77_A 6 KSENL-YAQAQQLIPGGVNSPVRAF---------TGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIR 75 (429)
T ss_dssp HHHHH-HHHHHHHSGGGCSSGGGGT---------TTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHH
T ss_pred hhHHH-HHHHHhhcCCCcCcccccc---------cccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHH
Confidence 45667 8999999999987666532 2345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 012368 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199 (465)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~ 199 (465)
+|+.+++++..+ ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.+++ +++||+++++
T Consensus 76 ~A~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~---------~~~ii~~~~~ 144 (429)
T 4e77_A 76 QAVIEAVERGLS--FGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTG---------RDKIIKFEGC 144 (429)
T ss_dssp HHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTC
T ss_pred HHHHHHHHhCcc--cCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhC---------CCEEEEEcCc
Confidence 999999987543 34677889999999999985 89999999999999999999988763 7899999999
Q ss_pred cccCccccccccCCCCc--CCCC-----CCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 200 FHGRTMGALALTSKEHY--RSPF-----EPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 200 yhg~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
|||++...+...+.... ..+. ......+..++++|+++|+++++ ++++++|++||+++++|.+.++++|++
T Consensus 145 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~ 224 (429)
T 4e77_A 145 YHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLP 224 (429)
T ss_dssp CCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHH
T ss_pred cCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHH
Confidence 99999865543321111 0000 11123456778899999999997 357899999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC---CCcCCCCC
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTFAG 347 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~~~ 347 (465)
+|+++|++||++||+||||+|| |+|..++.+.+++.||++||||++++|+|+|++++++++++.+.+. .+.+||++
T Consensus 225 ~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~ 303 (429)
T 4e77_A 225 GLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSG 303 (429)
T ss_dssp HHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCC
T ss_pred HHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCC
Confidence 9999999999999999999999 9998888889999999999999999999999999999999998753 47889999
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC----------------hH
Q 012368 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------------AT 411 (465)
Q Consensus 348 ~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~----------------~~ 411 (465)
|+++++++.++|+.++++++.++++++++++++.|++++..++....+++.|+++++++... ..
T Consensus 304 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
T 4e77_A 304 NPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFK 383 (429)
T ss_dssp CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHH
Confidence 99999999999999877889999999999999999998888887778899999999998432 16
Q ss_pred HHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+.|+++||++.+++. . |+++++.+|++++++++++|++++++
T Consensus 384 ~~~~~l~~~Gi~v~~~~~-~--~~~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 384 RFFHLMLEEGVYLAPSAF-E--AGFMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp HHHHHHHHTTEECCSSTT-S--CEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCeEEeecCC-C--CEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 788999999999998765 3 34568899999999999999998754
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-64 Score=510.48 Aligned_cols=384 Identities=26% Similarity=0.312 Sum_probs=334.0
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012368 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
..|.++ ++++.+++|+|++++++.+. +.|+++++++|+++||+|||+||||+++++++++||+||+|
T Consensus 55 ~~s~~l-~~~~~~~~~~g~~~~~~~~~------------~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V 121 (465)
T 2yky_A 55 PVSAGH-HERARRSMPGGNTRSILFHR------------PFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVI 121 (465)
Confidence 356777 99999999999988776542 56999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012368 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
++|+.+++++... ..++++...+|+++|++++ +.++++|+|||+||++.|+++++.+++ +++||++++
T Consensus 122 ~~Av~~q~~~~~~--~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tg---------r~~ii~~~~ 190 (465)
T 2yky_A 122 RAAVERALAVGLN--LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITG---------RKTVLAFDG 190 (465)
Confidence 9999999987432 3467777899999999998 588999999999999999999988764 889999999
Q ss_pred CcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+|||++..++ ++ +. .... ...+..+|++|+++|+++++. +++++|++||+++++|.++++++|+++|+++|
T Consensus 191 ~yHG~~~~~~--sg-~~-~~g~---~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~ 263 (465)
T 2yky_A 191 GYHGGLLNFA--SG-HA-PTNA---PYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEA 263 (465)
Confidence 9999998877 22 11 1011 114456788999999999973 57899999999999998899999999999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC-----CCCcCCCCChHHH
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-----GDHGSTFAGSPLV 351 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-----~~~~~t~~~~~~~ 351 (465)
++||++||+||||+ | |+|.+++++++++.||++||||++++|+|+||+++++++++.+.+ ..+.+||++||++
T Consensus 264 ~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla 341 (465)
T 2yky_A 264 SRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILT 341 (465)
Confidence 99999999999999 7 889888899999999999999999999999999999999999876 2477899999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------------ChHHHHHH
Q 012368 352 CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------------SATPVVDA 416 (465)
Q Consensus 352 ~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------------~~~~~~~~ 416 (465)
|+|++++|+.++++++++++++++++++++|++++.+++.+..+++.|+|+++++.. ....+++.
T Consensus 342 ~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ 421 (465)
T 2yky_A 342 MSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFH 421 (465)
Confidence 999999999998888999999999999999999887777777889999999998732 13468889
Q ss_pred HHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 417 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 417 l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|+++||++.|++.+ . +++++|++||++++++|++++++++
T Consensus 422 ll~~GV~v~p~~~~-~----~s~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 422 MLRKGIYLAPRGMY-A----LSLEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 99999999987642 1 7889999999999999999988764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=469.14 Aligned_cols=395 Identities=23% Similarity=0.323 Sum_probs=340.0
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012368 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
..|.++ ++++.+++|+|++++.+.+ ..+.+.|+++++|+|+++||.||++||||+++++++++||+||+|
T Consensus 4 ~~s~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v 73 (427)
T 3fq8_A 4 IKSDEI-FAAAQKLMPGGVSSPVRAF---------KSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEV 73 (427)
T ss_dssp HHHHHH-HHHHTTTSGGGSSSGGGGC---------TTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHH
T ss_pred chHHHH-HHHHHhhcCCCcccccccc---------cccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHH
Confidence 456777 9999999999987766532 234578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012368 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
++|+.+++++..+ ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.+++ +++||++++
T Consensus 74 ~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~---------~~~vi~~~~ 142 (427)
T 3fq8_A 74 IEALKVAMEKGTS--FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTG---------RDKIIKFEG 142 (427)
T ss_dssp HHHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEEET
T ss_pred HHHHHHHHHhCCC--cCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEECC
Confidence 9999999987544 23477889999999999985 88999999999999999999998864 789999999
Q ss_pred CcccCccccccccCCCCcCC--CCCCC-----CCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHH
Q 012368 199 SFHGRTMGALALTSKEHYRS--PFEPV-----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
+|||++..++..++...... +..+. ...+..+|++|+++|+++++. +++++|++||+++++|.+.++++|+
T Consensus 143 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l 222 (427)
T 3fq8_A 143 CYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFL 222 (427)
T ss_dssp CCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHH
T ss_pred CcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHH
Confidence 99999988776654332110 11111 123567889999999999973 4799999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC---CCcCCCC
Q 012368 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTFA 346 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~~ 346 (465)
++|+++|++||++||+||+|+|| ++|..+..+.+++.||++||||++++|+|+|++++++++++.+.+. .+.+|++
T Consensus 223 ~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~ 301 (427)
T 3fq8_A 223 EGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLS 301 (427)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTT
T ss_pred HHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCC
Confidence 99999999999999999999999 8888778888999999999999999999999999999999988753 4778999
Q ss_pred ChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------------hH
Q 012368 347 GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS---------------AT 411 (465)
Q Consensus 347 ~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~---------------~~ 411 (465)
+|+++++++.++|+.++++++.++++++++++++.|+++...++....+++.|+++++++... ..
T Consensus 302 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (427)
T 3fq8_A 302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFS 381 (427)
T ss_dssp TCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHH
Confidence 999999999999998877889999999999999999998877777677889999999988321 35
Q ss_pred HHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+.|+++||++.+++. .|+++++.+|++++++++++|++++++
T Consensus 382 ~l~~~l~~~Gi~v~~~~~---~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 382 RFHRGMLEQGIYLAPSQF---EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHTTEECCSSTT---SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEecCCC---CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 788999999999998764 367789999999999999999998875
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-60 Score=509.44 Aligned_cols=394 Identities=24% Similarity=0.374 Sum_probs=324.8
Q ss_pred HHHHHhccccccCC-------CceEEEeeecc--EEEeCCCC----EEEecccCcccccCCCC-CHHHHHHHHHHHhhcc
Q 012368 66 MEAEKKLLVGTYNR-------APVVLASGKGC--KLYDAEGR----EYLDLSSGIAVNALGHG-DADWIKAVVDQANVLT 131 (465)
Q Consensus 66 ~~~~~~~~~~~~~~-------~p~~~~~~~G~--~~~d~dG~----~ylD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~ 131 (465)
.+...++.|++|.. .|+++++++|. |+||.||+ +|||+++++|++++||+ ||+|.+|+.+|++++.
T Consensus 335 ~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~ 414 (831)
T 4a0g_A 335 AKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFG 414 (831)
T ss_dssp HHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc
Confidence 34455677877652 37899999995 99999999 99999999999999999 9999999999999987
Q ss_pred cccC-CCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHH-HHHhhhcCCCC-----CCCCceEEEEcCCcc
Q 012368 132 HVSN-MYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFA-RKFQRHSNPDS-----KEPATEFVSFTNSFH 201 (465)
Q Consensus 132 ~~~~-~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a-~~~t~~~~~~~-----~~~~~~ii~~~~~yh 201 (465)
+... .+.+++..+|+++|++..+ .++|+|+|||+|||+.|+|++ +.|+...+... .+++.+||.++.+||
T Consensus 415 h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syH 494 (831)
T 4a0g_A 415 HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYH 494 (831)
T ss_dssp SCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCC
T ss_pred cccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcc
Confidence 6532 3567889999999999987 679999999999999999999 66775433210 013779999999999
Q ss_pred cCccccccccCCCCcCC----CC----CCCC--------CCceEee--------------CCCH----------------
Q 012368 202 GRTMGALALTSKEHYRS----PF----EPVM--------PGVNFVE--------------YGNI---------------- 235 (465)
Q Consensus 202 g~~~~~~~~~~~~~~~~----~~----~~~~--------~~~~~~~--------------~~d~---------------- 235 (465)
|.+.+++++++...++. ++ .+.. +++.+++ ++|+
T Consensus 495 G~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (831)
T 4a0g_A 495 GDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARI 574 (831)
T ss_dssp CSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHH
T ss_pred cCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHH
Confidence 99999999987654432 11 0000 1222221 2232
Q ss_pred --HHHHhhcC-------CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccC
Q 012368 236 --EATRKLIQ-------PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305 (465)
Q Consensus 236 --~~le~~l~-------~~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~ 305 (465)
++|+++|+ .+++++||+||+ ++.+|+++++++||++|+++|++||++||+|||++||||+|.+|++++++
T Consensus 575 ~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~g 654 (831)
T 4a0g_A 575 YSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLG 654 (831)
T ss_dssp HHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHS
T ss_pred HHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcC
Confidence 56888875 357999999997 99999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEecccCCCc-cceeeEEeCHHHHhhccCC------CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012368 306 IFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 306 ~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
+.||++|+||+++|| +|+|++++++++++.+... .|++||++||++|+|++++|+.++++++.+++.++++++
T Consensus 655 v~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l 734 (831)
T 4a0g_A 655 CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTL 734 (831)
T ss_dssp SCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBB
T ss_pred CCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999 7999999999999988653 388999999999999999999998777777777666655
Q ss_pred H----HHHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHH
Q 012368 379 K----ETLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQ 444 (465)
Q Consensus 379 ~----~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e 444 (465)
+ +.+.+.+.++|.+..+++.|+|+++++.. .+.++.+.|+++||++.|.+ +.+||+|++.+|++
T Consensus 735 ~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g--~~lrl~pp~~~t~e 812 (831)
T 4a0g_A 735 RELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLG--NVIYLMCGPCTSPE 812 (831)
T ss_dssp CCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCBT--TEEEEECCTTCCHH
T ss_pred HHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEecC--CEEEEECCCCCCHH
Confidence 4 34555566788899999999999999832 13468889999999999875 79999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012368 445 ELDQAVEILCKTLPVLD 461 (465)
Q Consensus 445 ~i~~~l~~l~~~l~~~~ 461 (465)
+|++++++|.++++++.
T Consensus 813 ~id~~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 813 ICRRLLTKLYKRLGEFN 829 (831)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987663
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-58 Score=465.02 Aligned_cols=395 Identities=38% Similarity=0.694 Sum_probs=326.6
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 012368 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (465)
.+..+++.+.++.++.|.+.|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++++..+.+..+..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~ 99 (420)
T 2pb2_A 20 QTAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNE 99 (420)
T ss_dssp -------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCH
T ss_pred hHHHHHHHHHHhhhccccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCH
Confidence 34455566667777788888999999999999999999999999999999999999999999999998765544446678
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
...+++++|+++++.++|+|++||+||++.|+++++.+....+.+ ++++||+++|+|||++..++..++...+...+
T Consensus 100 ~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~---g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 176 (420)
T 2pb2_A 100 PALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSP---FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176 (420)
T ss_dssp HHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCT---TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred HHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCC---CCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence 899999999999999999999999999999999988763221111 35689999999999998877766554444455
Q ss_pred CCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc
Q 012368 221 EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300 (465)
Q Consensus 221 ~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~ 300 (465)
.|..+++..+|++|+++|++++++ ++++|++||+++++|+++++.+++++|+++|++||++||+||+|+|||++|..++
T Consensus 177 ~p~~~~~~~~~~~d~~~le~~i~~-~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~ 255 (420)
T 2pb2_A 177 GPKPADIIHVPFNDLHAVKAVMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFA 255 (420)
T ss_dssp SSCCSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSH
T ss_pred CCCCCCeEEecCCCHHHHHHHhcc-CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHH
Confidence 677777888899999999999974 6899999999998888888999999999999999999999999999999998777
Q ss_pred ccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 012368 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKE 380 (465)
Q Consensus 301 ~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~ 380 (465)
++.+++.||++||||++++|+|+|++++++++++.+.+..+..||++|+++++++.++|+.++++++.++++++++++++
T Consensus 256 ~~~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~ 335 (420)
T 2pb2_A 256 YMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQ 335 (420)
T ss_dssp HHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999998876667889999999999999999998777889999999999999
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.|+++...++.+..+++.|+++++++.. ...++.+.|+++||++.+++. +++||+|++.++++++++++++|+++
T Consensus 336 ~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-~~iRl~~~~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 336 HLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGA-DVMRFAPSLVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp HHHHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCCC-CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9988755567666778899999998842 467899999999999998764 89999999999999999999999999
Q ss_pred HHHh
Q 012368 457 LPVL 460 (465)
Q Consensus 457 l~~~ 460 (465)
++++
T Consensus 415 l~~~ 418 (420)
T 2pb2_A 415 VGKV 418 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=468.19 Aligned_cols=386 Identities=30% Similarity=0.472 Sum_probs=315.1
Q ss_pred ccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHH
Q 012368 72 LLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLV 150 (465)
Q Consensus 72 ~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~ 150 (465)
+.+++|.+.|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..+++ ..++++...+++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la 82 (430)
T 3i4j_A 3 NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLA 82 (430)
T ss_dssp CBCCSSSSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHH
T ss_pred ccccCCCCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 456667778999999999999999999999999999999999999999999999998865443 2566777999999999
Q ss_pred hhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC--C
Q 012368 151 ACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--G 226 (465)
Q Consensus 151 ~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~ 226 (465)
+.++ .++|+|++||+||++.|+++++.+....+.. ++++||+++|+|||++..+..+++...+...+.+..+ +
T Consensus 83 ~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (430)
T 3i4j_A 83 RFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP---GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEA 159 (430)
T ss_dssp HHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTC-------------------------CGGG
T ss_pred HhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCC
Confidence 9985 7899999999999999999998763322221 4789999999999999888887776655555556556 6
Q ss_pred ceEeeCCC--------HHHHHhhcCC---CCeEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC
Q 012368 227 VNFVEYGN--------IEATRKLIQP---GKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294 (465)
Q Consensus 227 ~~~~~~~d--------~~~le~~l~~---~~~a~vi~ep~~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr 294 (465)
+.++|+++ +++|+++++. +++++|++||+++ ++|.++++++++++|+++|++||++||+||||+|||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~ 239 (430)
T 3i4j_A 160 WPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGR 239 (430)
T ss_dssp SCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 77777763 4899998862 5789999999999 9999999999999999999999999999999999999
Q ss_pred CCcccccccc-CCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC----CCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 295 TGYLWAHEHY-GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 295 ~g~~~~~~~~-~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
+|..++.+++ ++.||++||||++++| +|+|++++++++++.+... .+..||++|+++++|+.++|+.++++++.
T Consensus 240 ~g~~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 319 (430)
T 3i4j_A 240 CGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLT 319 (430)
T ss_dssp TSSSSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred ccchhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHH
Confidence 9988888888 9999999999999999 9999999999999988653 67889999999999999999988778899
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-----------CChHHHHHHHHHCCceEeec-----C-CCC
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-----------VSATPVVDACRDSGLLVLTA-----G-KGN 431 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-----------~~~~~~~~~l~~~Gv~v~~~-----~-~~~ 431 (465)
++++++.+++++.|.+++..+|.+..+++.|+|+++++. ....++.+.|+++||++.++ + .++
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~ 399 (430)
T 3i4j_A 320 GAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGD 399 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------C
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCC
Confidence 999999999999999988888888889999999999883 11257899999999999886 1 147
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 432 VVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 432 ~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++||++++.+|++++++++++|+++++++
T Consensus 400 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 400 HLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999865
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-57 Score=462.79 Aligned_cols=373 Identities=29% Similarity=0.525 Sum_probs=323.4
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHhhcC--C
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~--~ 155 (465)
..|+++++++|+++||.||++||||+++.+++++||+||+|++|+.+++++..++. ..++++...+++++|++.++ .
T Consensus 24 ~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 103 (439)
T 3dxv_A 24 FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEG 103 (439)
T ss_dssp SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTT
T ss_pred CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 36899999999999999999999999999999999999999999999998765432 45567789999999999984 5
Q ss_pred -CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC--cCCCCCCCCCCceEeeC
Q 012368 156 -DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH--YRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 156 -~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 232 (465)
++|+|++||+||++.|+++++.++ ++++||+++++|||++..++.+++... ++..+.+..+++..+|+
T Consensus 104 ~~~v~~~~ggsea~~~al~~~~~~~---------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (439)
T 3dxv_A 104 THKIWFGHSGSDANEAAYRAIVKAT---------GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPY 174 (439)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHHHH---------SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSS
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHh---------CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCC
Confidence 799999999999999999988766 378899999999999998888776544 44444454445556666
Q ss_pred C----------CHHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 233 G----------NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 233 ~----------d~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+ |+++|+++++ .+++++|+++|+++++|.+.++++++++|+++|++||++||+||+|+|||++|..+
T Consensus 175 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~ 254 (439)
T 3dxv_A 175 RPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH 254 (439)
T ss_dssp SCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS
T ss_pred CcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 5 6899999993 45799999999999999999999999999999999999999999999999999877
Q ss_pred cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012368 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
..+.+++.||++||||++++|+|+|++++++++++.+.+..+..|+ +||++++++.++|+.++++++.++++++.++++
T Consensus 255 ~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 3dxv_A 255 CFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLR 333 (439)
T ss_dssp GGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999877778899 999999999999998877889999999999999
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEec----------CChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRGLGLIIGIEFD----------VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~----------~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~ 448 (465)
+.|.++...++.+..+++.|+|+++++. ....++.+.|+++||++.+++. ++++||++++.+|++++++
T Consensus 334 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~ 413 (439)
T 3dxv_A 334 DGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHK 413 (439)
T ss_dssp HHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHH
Confidence 9999988888888888999999999872 1245788999999999998764 4789999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 012368 449 AVEILCKTLPVLD 461 (465)
Q Consensus 449 ~l~~l~~~l~~~~ 461 (465)
++++|+++++++.
T Consensus 414 ~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 414 ALDLLDRAFSELS 426 (439)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-56 Score=451.73 Aligned_cols=394 Identities=23% Similarity=0.331 Sum_probs=328.5
Q ss_pred ccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHH
Q 012368 41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120 (465)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~ 120 (465)
.|.++ ++++.+++++|+.+..+.+. .+.|+++++++|+++||.||++||||.++++++++||+||+|+
T Consensus 11 ~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~ 78 (434)
T 2epj_A 11 KSRML-FERTKELFPGGVNSPVRAAV-----------KPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVL 78 (434)
T ss_dssp HHHHH-HHHHTTTSGGGSSSGGGGGC-----------SSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHH
T ss_pred chHHH-HHHHHhhcCCCcCccccccc-----------CCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHH
Confidence 34556 78888888888766655320 2569999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 012368 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199 (465)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~ 199 (465)
+|+.+++++..+ ..++.+...+++++|++++ +.++|+|++||+||++.|+++++.+++ +++||+++++
T Consensus 79 ~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~---------~~~vi~~~~~ 147 (434)
T 2epj_A 79 EAVEEALARGWL--YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTG---------RDLILKFDGC 147 (434)
T ss_dssp HHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEEETC
T ss_pred HHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCeEEEEcCC
Confidence 999999987432 3457778899999999998 689999999999999999999887763 7789999999
Q ss_pred cccCccccccccCCCCcC--CCCC-CC----CCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 200 FHGRTMGALALTSKEHYR--SPFE-PV----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 200 yhg~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
|||++..++...+..... .+.. .. ...+..+|++|+++|+++++. +++++|++||+++++|.+++++++++
T Consensus 148 yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 227 (434)
T 2epj_A 148 YHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLA 227 (434)
T ss_dssp CCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHH
T ss_pred cCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHH
Confidence 999998776554321100 0010 01 124566788999999999973 47899999999999998888999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC-C--CCcCCCCC
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-G--DHGSTFAG 347 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~--~~~~t~~~ 347 (465)
+|+++|++||++||+||+|+|| ++|..++++.+++.||++||||++++|+|+|++++++++++.+.+ . .+.+||++
T Consensus 228 ~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~ 306 (434)
T 2epj_A 228 ALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNA 306 (434)
T ss_dssp HHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCc
Confidence 9999999999999999999999 778777778889999999999999999999999999999998875 2 36688999
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------------ChHH
Q 012368 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------------SATP 412 (465)
Q Consensus 348 ~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------------~~~~ 412 (465)
||++++++.++|+.++++++.++++++++++++.|+++..+++....+++.|+++++++.. ...+
T Consensus 307 ~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 386 (434)
T 2epj_A 307 HPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVK 386 (434)
T ss_dssp CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHH
Confidence 9999999999999887678999999999999999998766566655678899999999843 1356
Q ss_pred HHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 413 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.+.|+++||++.+++. . |+++++.+|++++++++++|+++++++.
T Consensus 387 ~~~~l~~~Gv~v~~~~~-~--~~~~~~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 387 LHEEMLRRGVFIAPSNL-E--AVFTGLPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp HHHHHHHTTEECCSSTT-S--CEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEeccCC-C--cEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 88999999999998764 2 4567889999999999999999998763
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-56 Score=451.39 Aligned_cols=392 Identities=27% Similarity=0.405 Sum_probs=329.2
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012368 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
..|.++ ++++.+++|+|++++.+.+. .|...|+++++++|+++||.||++||||.++.+++++||+||+|
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v 73 (424)
T 2e7u_A 4 PISEAY-FQEAKRHIPGGVSSPVRAFK---------AVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKV 73 (424)
T ss_dssp HHHHHH-HHHHHHHSGGGSSSGGGGCT---------TTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHH
T ss_pred chHHHH-HHHHHHhcCCCcCCcceecc---------ccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHH
Confidence 456677 89999999999888776431 23456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012368 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
++|+.+++++..+ ..++.+...+++++|++++ +.++|+|++||+||++.|+++++.+++ +++||+++|
T Consensus 74 ~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~---------~~~vi~~~~ 142 (424)
T 2e7u_A 74 LARVRETLERGLT--FGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTG---------RPYIVKFRG 142 (424)
T ss_dssp HHHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETT
T ss_pred HHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEECC
Confidence 9999999987432 3467777999999999998 589999999999999999999887774 688999999
Q ss_pred CcccCccccccccCCCC--cCCCCCC-C----CCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHH
Q 012368 199 SFHGRTMGALALTSKEH--YRSPFEP-V----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~--~~~~~~~-~----~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
+|||++..++...+... +..+... . ...+..+|++|+++|+++++. +++++|++||+++++|.++++++++
T Consensus 143 ~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l 222 (424)
T 2e7u_A 143 NYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFL 222 (424)
T ss_dssp CCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHH
T ss_pred CcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHH
Confidence 99999887765443211 1001110 0 124566788999999999862 4789999999999989888899999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC-C--CCcCCCC
Q 012368 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-G--DHGSTFA 346 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~--~~~~t~~ 346 (465)
++|+++ ++||++||+||+|+|| ++|..++++.+++.||++||||++++|+|+|++++++++++.+.+ . .+.+||+
T Consensus 223 ~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~ 300 (424)
T 2e7u_A 223 KALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLS 300 (424)
T ss_dssp HHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTC
T ss_pred HHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCC
Confidence 999999 9999999999999999 888777778889999999999999999999999999999998875 2 3678999
Q ss_pred ChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------------Ch
Q 012368 347 GSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------------SA 410 (465)
Q Consensus 347 ~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------------~~ 410 (465)
+||++++|+.++|+.+++ +++.++++++++++++.|+++..+++....+++.|+|+++++.. ..
T Consensus 301 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 380 (424)
T 2e7u_A 301 GNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELF 380 (424)
T ss_dssp SCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHH
Confidence 999999999999998876 78999999999999999998876677655678899999999842 13
Q ss_pred HHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 411 TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 411 ~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.++.+.|+++||++.+++. . |+++++.+|++++++++++|++++
T Consensus 381 ~~~~~~l~~~Gv~v~~~~~-~--~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 381 KRFFHGLLDRGIYWPPSNF-E--AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp HHHHHHHHTTTEECCSSSS-S--CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCeEEeccCC-C--ceEeeccCCHHHHHHHHHHHHHhC
Confidence 4688899999999998764 2 456688999999999999998763
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=448.48 Aligned_cols=388 Identities=30% Similarity=0.507 Sum_probs=323.5
Q ss_pred HHHHHHHHhccccccCC-CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 012368 63 KEVMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~ 141 (465)
+++.++..++..+.+.. .|+++.+++|+++||.||++||||.++.++.++||+||+|++|+.+++++..+....++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 86 (433)
T 1zod_A 7 ATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRP 86 (433)
T ss_dssp HHHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHH
T ss_pred HHHHHHHHHhhcccccccCCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHH
Confidence 33444443333333433 48899999999999999999999999999899999999999999999987644334566777
Q ss_pred HHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
..+++++|+++++ .++|+|++||+||++.|+++++.+++ +++||+++|+|||++..++..++... ...
T Consensus 87 ~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~---------~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~ 156 (433)
T 1zod_A 87 VVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTG---------KYEIVGFAQSWHGMTGAAASATYSAG-RKG 156 (433)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHTCCSSC-CSS
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCCChhHHhhcCCcc-ccc
Confidence 8999999999986 78999999999999999998876653 67899999999999988776654332 222
Q ss_pred CCCCCCCceEee--------CC---------CHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 012368 220 FEPVMPGVNFVE--------YG---------NIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA 279 (465)
Q Consensus 220 ~~~~~~~~~~~~--------~~---------d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 279 (465)
+.+...++..++ ++ |+++|+++++. +++++|++||+++++|.++++++++++|+++|++|
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~ 236 (433)
T 1zod_A 157 VGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR 236 (433)
T ss_dssp SCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred cCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh
Confidence 333334444433 23 38999998862 57899999999888898889999999999999999
Q ss_pred CCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHH
Q 012368 280 GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIA 357 (465)
Q Consensus 280 g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a 357 (465)
|++||+||||+|||++|..++++.+++.||++||||++++|+|+|++++++++++.+.... +++|+++|+++++|+.+
T Consensus 237 ~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a 316 (433)
T 1zod_A 237 GMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLR 316 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHH
T ss_pred CCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHH
Confidence 9999999999999999887777888999999999999999999999999999998886533 44889999999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCceEeec
Q 012368 358 VLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTA 427 (465)
Q Consensus 358 ~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~ 427 (465)
+|+.++++++.++++++++++++.|+++...++.+..+++.|+|+++++.. ...++.+.|+++||++.++
T Consensus 317 al~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 396 (433)
T 1zod_A 317 VLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIV 396 (433)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEE
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEecc
Confidence 999887778899999999999999998766777777788899999998731 2567899999999999887
Q ss_pred CC-C--CEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 428 GK-G--NVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 428 ~~-~--~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+. + +++||++++.+|++++++++++|+++++++
T Consensus 397 ~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 397 QLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp CCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 53 3 789999999999999999999999998764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-56 Score=452.99 Aligned_cols=393 Identities=27% Similarity=0.405 Sum_probs=325.8
Q ss_pred hHHHHHHHHhcc-ccccCCCceEEEeeeccEEEe-CCCCEEEecccCcccccCCCCCHHHH-H-HHHH---HHhhccccc
Q 012368 62 NKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYD-AEGREYLDLSSGIAVNALGHGDADWI-K-AVVD---QANVLTHVS 134 (465)
Q Consensus 62 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~G~~~~d-~dG~~ylD~~~~~~~~~lGh~~p~v~-~-a~~~---~~~~~~~~~ 134 (465)
.+.+++...++. ...| +.++.+++++|+++|| .||++||||++++++++|||+||+|+ + |+.+ ++++..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~ 95 (449)
T 2cjg_A 17 PDRVHEVLGRSMLVDGL-DIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95 (449)
T ss_dssp GGGHHHHHHTTSCCCSC-SSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHhhcccCC-CeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344555555554 3233 4444456999999999 99999999999999999999999999 9 9999 887765443
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEcCCcccCccccc
Q 012368 135 NMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHS---NPDSKEPATEFVSFTNSFHGRTMGAL 208 (465)
Q Consensus 135 ~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~---~~~~~~~~~~ii~~~~~yhg~~~~~~ 208 (465)
..+.++...+++++|+++++ .++|+|++||+||++.|+++++.+++.. .+.+.+++++||+++++|||++..++
T Consensus 96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~ 175 (449)
T 2cjg_A 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL 175 (449)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence 45677778999999999873 7899999999999999999998776411 00000127899999999999999888
Q ss_pred cccCC-CCcCCCCCCCCCCceEeeCCC--HHH-------------HHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 209 ALTSK-EHYRSPFEPVMPGVNFVEYGN--IEA-------------TRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 209 ~~~~~-~~~~~~~~~~~~~~~~~~~~d--~~~-------------le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
.+++. +.+...+.+..+++.++|++| .+. |+++++ .+++++|++||+++++|.+++++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence 87764 333334556666777788877 433 888885 357899999999999998899999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhc-----cCCCCcCCC
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI-----NYGDHGSTF 345 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~-----~~~~~~~t~ 345 (465)
+|+++|++||++||+||||+|||++|..++++.+++.||++||||++ |+|++++++++++.+ .+..+++|+
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~ 331 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTW 331 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSS
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCC
Confidence 99999999999999999999999999877788889999999999998 899999999998863 334577899
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC-ceeeeccceEEEEEecC--ChHHHHHHHHHCCc
Q 012368 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDV--SATPVVDACRDSGL 422 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv 422 (465)
++|+++++|+.++|+.+.++++.++++++++++++.|+++...++. +..+++.|+|+++++.. ...++.+.|+++||
T Consensus 332 ~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv 411 (449)
T 2cjg_A 332 GGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRAV 411 (449)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHHHHHHHHHHHHHTTE
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChHHHHHHHHHHHHCCe
Confidence 9999999999999998876788999999999999999987667775 77788999999998842 35679999999999
Q ss_pred eEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 423 LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 423 ~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++.+++. +++||+|++.+|++++++++++|+++++++
T Consensus 412 ~v~~~g~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 412 IVLPAGA-DTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp ECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999865 899999999999999999999999998764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=435.76 Aligned_cols=388 Identities=41% Similarity=0.717 Sum_probs=341.9
Q ss_pred hccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 012368 71 KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLV 150 (465)
Q Consensus 71 ~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~ 150 (465)
++..+.|.+.|+++++++|+++||.+|++||||.++.+++++||+||++.+++.+++.+..+....++.+...+++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la 91 (406)
T 4adb_A 12 EWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLI 91 (406)
T ss_dssp HHBCSSCCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHH
T ss_pred HHhhhhcCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHH
Confidence 45666778889999999999999999999999999999999999999999999999987555445567788999999999
Q ss_pred hhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEe
Q 012368 151 ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV 230 (465)
Q Consensus 151 ~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (465)
++++.++|++++||++|++.++++++.+....+.. ++++||+++|+||++...+...++.+.+...+.+...++..+
T Consensus 92 ~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~---g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (406)
T 4adb_A 92 DATFADRVFFCNSGAEANEAALKLARKFAHDRYGS---HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHA 168 (406)
T ss_dssp HHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCT---TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEE
T ss_pred hhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEe
Confidence 99998899999999999999999887652211111 368999999999999988888877666655566666788889
Q ss_pred eCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccE
Q 012368 231 EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310 (465)
Q Consensus 231 ~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi 310 (465)
|++|+++|+++++ .++++|+++|+|++||+++++.+++++|+++|++||++||+||+|+||++.|..+..+.+++.||+
T Consensus 169 ~~~d~~~l~~~l~-~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 247 (406)
T 4adb_A 169 AYNDINSASALID-DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDL 247 (406)
T ss_dssp CTTCHHHHHTTCS-TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSE
T ss_pred CCCcHHHHHHHhc-CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCE
Confidence 9999999999997 478999999999999998889999999999999999999999999999999987777888999999
Q ss_pred EEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC
Q 012368 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 311 ~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
+||||++++|+|+|++++++++++.+.+..+..+++.++++++++.++|+.++.+++.++++++.+++++.|+++...++
T Consensus 248 ~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 327 (406)
T 4adb_A 248 LTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYG 327 (406)
T ss_dssp EEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999877788899999999999999999887788899999999999999998766666
Q ss_pred CceeeeccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 391 HVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 391 ~~~~~~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.+..+++.|.++++.+.. ...++.+.|+++||.+.+++. +++|+++++.+|++++++++++|+++++++.++
T Consensus 328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 403 (406)
T 4adb_A 328 LFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGG-NVVRFAPALNVSEEEVTTGLDRFAAACEHFVSR 403 (406)
T ss_dssp CEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCC-CeEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 677788889999999843 578899999999999998765 899999999999999999999999999887653
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-54 Score=432.39 Aligned_cols=387 Identities=35% Similarity=0.597 Sum_probs=335.9
Q ss_pred HHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHH
Q 012368 65 VMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIE 144 (465)
Q Consensus 65 ~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (465)
+++.+.++..+.|.+.|+++++++|+++||.||++||||.+++++.++||+||+|.+|+.+++++..+.+..++.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 82 (392)
T 3ruy_A 3 IIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGP 82 (392)
T ss_dssp HHHHHHHHBCTTCCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHH
T ss_pred HHHHHHhhhhccCCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHH
Confidence 34455677778888999999999999999999999999999999999999999999999999987665544456667899
Q ss_pred HHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhh-hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC
Q 012368 145 LAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV 223 (465)
Q Consensus 145 la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 223 (465)
++++|++.++.++++|++||++|++.|+++++.... ..+.. +++++||+++++|||.+..++.+++...+...+.+.
T Consensus 83 l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (392)
T 3ruy_A 83 WYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVE--ANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPM 160 (392)
T ss_dssp HHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC--TTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSC
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCC--CCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCC
Confidence 999999999999999999999999999998876510 00000 136799999999999999888877766666666677
Q ss_pred CCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccc
Q 012368 224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303 (465)
Q Consensus 224 ~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~ 303 (465)
.+++..++++|+++|+++++ .++++|+++|+++++|.+.++++++++|+++|++||++||+||+|++|+++|..+..+.
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~ 239 (392)
T 3ruy_A 161 LPGIIVIPYGDLEALKAAIT-PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDW 239 (392)
T ss_dssp CSSEEEECTTCHHHHHHHCC-TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred CCCCeeeCcccHHHHHHHhc-cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhc
Confidence 77788889999999999997 47899999999999999988999999999999999999999999999999998777888
Q ss_pred cCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 012368 304 YGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETL 382 (465)
Q Consensus 304 ~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l 382 (465)
+++.||++||||+++|| +|+|++++++++++.+.+..+..+++.|+++++++.++|+.+..+++.++++++.+++++.|
T Consensus 240 ~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 319 (392)
T 3ruy_A 240 DNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQL 319 (392)
T ss_dssp GTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999 99999999999999998777888999999999999999998766778888888888888877
Q ss_pred HHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 383 KQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 383 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+++ ..+.+..+++.|.++++.++.+..++.+.|+++||.+.+++. +++|+++++.+|++++++++++|++++
T Consensus 320 ~~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 320 KEI--DNPMITEVRGKGLFIGIELNEPARPYCEQLKAAGLLCKETHE-NVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TTC--CCTTEEEEEEETTEEEEEESSCSHHHHHHHHTTTEECCCBTT-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHh--cCCCceEEEeeeeEEEEEEcchHHHHHHHHHHCCcEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 654 235566778889999998855778899999999999998765 899999999999999999999999876
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-55 Score=444.79 Aligned_cols=391 Identities=21% Similarity=0.283 Sum_probs=308.3
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012368 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
..|.++ ++++.+++|+|+++..+. |.+.|+++++++|+++||.||++||||.++.++.++||+||+|
T Consensus 12 ~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v 78 (453)
T 2cy8_A 12 EGSVFW-AQRARSVMPDGVTADTRA------------FDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRV 78 (453)
T ss_dssp HHHHHH-HHHHHHHSCCC------C------------CSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHH
T ss_pred chhHHH-HHHHHhhcCCCCCccccc------------cCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHH
Confidence 355667 888889999887665542 2357999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012368 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
++|+.+++++..+ ..++.+.+.++++++++.+ +.++|+|++||+||++.|+++++.+++ +++||+++|
T Consensus 79 ~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~---------~~~vi~~~~ 147 (453)
T 2cy8_A 79 NAAIAEALSHGVQ--YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTG---------RRMILRFEG 147 (453)
T ss_dssp HHHHHHHHTTTCS--SCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHC---------CCEEEEECC
T ss_pred HHHHHHHHHhCCC--CCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEEcC
Confidence 9999999987432 2467788999999999988 488999999999999999999887764 678999999
Q ss_pred CcccCccccccccCC----CCcCCCCC-CCCCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHHH
Q 012368 199 SFHGRTMGALALTSK----EHYRSPFE-PVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQF 271 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~ 271 (465)
+|||++..++...+. +... ... .....+..+|++|+++|+++++. .++++|++||+++++|.++++++++++
T Consensus 148 ~yhg~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~ 226 (453)
T 2cy8_A 148 HYHGWHDFSASGYNSHFDGQPAP-GVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLRE 226 (453)
T ss_dssp -----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHH
T ss_pred CcCCCchhhHhhcCCccCCCcCC-CCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHH
Confidence 999998876654322 1100 000 01124556788899999999972 478999999998888888889999999
Q ss_pred HHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---C--CCcCCCC
Q 012368 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---G--DHGSTFA 346 (465)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~--~~~~t~~ 346 (465)
|+++|++||++||+||+|+|| ++|..++++.+++.||++|+||++++|+|+|++++++++++.+.. . .+.+||+
T Consensus 227 l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~ 305 (453)
T 2cy8_A 227 GAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFT 305 (453)
T ss_dssp HHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CC
T ss_pred HHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCC
Confidence 999999999999999999999 888777777889999999999999999999999999999998875 1 3567899
Q ss_pred ChHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC-----C-----------
Q 012368 347 GSPLVCNAAIAVLDK-ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-----S----------- 409 (465)
Q Consensus 347 ~~~~~~~aa~a~L~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-----~----------- 409 (465)
+||++++++.++|+. + .+++.++++++++++++.|+++...++....+++.|+++++++.. .
T Consensus 306 ~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 384 (453)
T 2cy8_A 306 GNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVAR 384 (453)
T ss_dssp CCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCC
T ss_pred CCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEecccccccccccccccccc
Confidence 999999999999998 7 678899999999999999998876677666678899999999853 1
Q ss_pred -----hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 410 -----ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 410 -----~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
..++.+.|+++||++.+. + |+++++.++++++++++++|+++++++.+
T Consensus 385 ~~~~~~~~l~~~l~~~Gv~v~~~---~--~~~l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 385 PDVKMIAAMRMALILEGVDIGGR---G--SVFLSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp CCHHHHHHHHHHHHHTTEECBTT---T--EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCeEEeCC---C--CEEeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999643 2 34567999999999999999999987754
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-55 Score=446.69 Aligned_cols=392 Identities=26% Similarity=0.361 Sum_probs=306.4
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhc--ccccCCC-
Q 012368 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNMY- 137 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~--~~~~~~~- 137 (465)
..+++.++..++......+.|..+++++|+++||.||++||||++++++.+|||+||+|++|+.+++... .+.+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~ 105 (472)
T 1ohv_A 26 RSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 105 (472)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT
T ss_pred cHHHHHHHHHhhhccccccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc
Confidence 3455555555554333345677889999999999999999999999999999999999999999987542 2221111
Q ss_pred --CCHHHHHHHHHHHhhc--CCCeEEecCCHHHHHHHHHHHHHHHhhh--cC---------------CCCCCCCceEEEE
Q 012368 138 --YSIPQIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRH--SN---------------PDSKEPATEFVSF 196 (465)
Q Consensus 138 --~~~~~~~la~~l~~~~--~~~~v~~~~sG~eA~~~al~~a~~~t~~--~~---------------~~~~~~~~~ii~~ 196 (465)
..+..++++++|++.. +.++|+|++||+|||+.|+++++.++.. ++ ..+..++++||++
T Consensus 106 ~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~ 185 (472)
T 1ohv_A 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSF 185 (472)
T ss_dssp SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEE
T ss_pred ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEE
Confidence 2344666777777766 3789999999999999999999876420 00 0000014899999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceE-------------eeCC------CHHHHHhhcCC-----CCeEEEEE
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF-------------VEYG------NIEATRKLIQP-----GKTAAVFV 252 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~------d~~~le~~l~~-----~~~a~vi~ 252 (465)
+++|||++.+++++++...+.....+. .++.+ .+++ |+++|+++|++ .++++|++
T Consensus 186 ~~~yHg~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~viv 264 (472)
T 1ohv_A 186 MGAFHGRTMGCLATTHSKAIHKIDIPS-FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIV 264 (472)
T ss_dssp TTCCCCSSHHHHHHCCSCHHHHTTSCC-CCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCcccccHHHHhcCCCccccccCCCC-CCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999999998877643221000010 00000 0122 68899999863 16899999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCc--ccEEEeccc-CCCccceeeEEeC
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKP-LAGGLPIGAALVT 329 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~--pdi~t~sK~-lg~G~~iG~v~~~ 329 (465)
||+++++|.++++++|+++|+++|++||++||+||||+|||++|.+++++.+++. ||++||||+ ++||++ + +
T Consensus 265 e~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~~----~-~ 339 (472)
T 1ohv_A 265 EPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF----H-K 339 (472)
T ss_dssp CSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEE----E-C
T ss_pred cCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCcc----C-c
Confidence 9999999999999999999999999999999999999999999987788888986 999999999 676543 3 6
Q ss_pred HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-CceeeeccceEEEEEecC
Q 012368 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~ 408 (465)
+++ ..+.+..+.+|+++||++++|+.++|+.+.++++.++++++++++++.|+++..++| .+..+++.|+|+++++..
T Consensus 340 ~~~-~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~ 418 (472)
T 1ohv_A 340 EEF-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPD 418 (472)
T ss_dssp GGG-SCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSS
T ss_pred hhh-cccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCC
Confidence 665 334455678999999999999999999887778899999999999999998766677 366788899999998742
Q ss_pred --ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 409 --SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 409 --~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
...++++.|+++||++.+++. +++||+|++.+|++||++++++|+++++++
T Consensus 419 ~~~~~~~~~~l~~~Gv~~~~~g~-~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 419 ESIRNKLISIARNKGVMLGGCGD-KSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHCCeEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 356799999999999998764 799999999999999999999999998764
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=440.22 Aligned_cols=375 Identities=27% Similarity=0.466 Sum_probs=314.5
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--CC
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--AD 156 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~~ 156 (465)
.|+++++++|+++||.||++||||.++.+++++||+||+|++|+.+++++...... .+..+...+++++|+++++ .+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 58899999999999999999999999999999999999999999999987531112 4667778999999999984 78
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC---
Q 012368 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--- 233 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (465)
+|+|++||+||++.|+++++.++..++.+ ++++||+++|+|||++..++..++.+.++..+.+...++..++.+
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~ 188 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQA---TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLA 188 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCG
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccc
Confidence 99999999999999999998876433321 478999999999999987776655433333333333444433321
Q ss_pred -------C--------HHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 234 -------N--------IEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 234 -------d--------~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
| +++|+++++. +++++|++||+++++|.++++++++++|+++|++||++||+||||++||++
T Consensus 189 ~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~ 268 (449)
T 3a8u_X 189 SNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT 268 (449)
T ss_dssp GGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Confidence 5 8999999862 478999999999888988899999999999999999999999999999999
Q ss_pred CccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC---------CCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG---------DHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~---------~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
|..+..+.+++.||++|+||++++| +|+|++++++++++.+... .+..|+++|+++++++.++|+.++++
T Consensus 269 g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~ 348 (449)
T 3a8u_X 269 GSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE 348 (449)
T ss_dssp SSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred CcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc
Confidence 8877778889999999999999988 9999999999999888653 35678999999999999999988767
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------hHHHHHHHHHCCceEeecCCCCEEEEecC
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAGKGNVVRLVPP 438 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~ 438 (465)
++.++++++++++++.|++ +..++.+..+++.|+++++++... ..++.+.|+++||++.+++ +++||+|+
T Consensus 349 ~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRis~~ 425 (449)
T 3a8u_X 349 NLVQSVAEVAPHFEKALHG-IKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG--DTLQFGPT 425 (449)
T ss_dssp THHHHHHHHHHHHHHHHHT-TTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET--TEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHH-HhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC--CEEEEECC
Confidence 8899999999999999977 345666666788899999998421 1268999999999999875 78999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 012368 439 LIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 439 ~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+.+|++++++++++|+++++++
T Consensus 426 ~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 426 FNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-54 Score=434.07 Aligned_cols=377 Identities=41% Similarity=0.702 Sum_probs=310.0
Q ss_pred hHHHHHHHHhc-cccccCC--CceEEEeeeccEEEeCCCCEEEecccCcccccCCCC-CHHHHHHHHHHHhhcccc-cCC
Q 012368 62 NKEVMEAEKKL-LVGTYNR--APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHV-SNM 136 (465)
Q Consensus 62 ~~~~~~~~~~~-~~~~~~~--~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~~~-~~~ 136 (465)
.++++++..++ ..+.|.+ .|+++.+++|+++||.||++||||.++.+++++||+ ||+|++|+.+++++..+. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~ 82 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND 82 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSSCCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSC
T ss_pred hHHHHHHHHhhhccccccccCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccc
Confidence 45566666666 6667766 799999999999999999999999999999999998 999999999999875432 234
Q ss_pred CCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 137 YYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 137 ~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
++++...+++++|+++++ .++|+|++||+||++.|+++++.++ +++||+++|+|||++..++.+++.
T Consensus 83 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~----------~~~vi~~~p~yh~~~~~~~~~~~~ 152 (419)
T 2eo5_A 83 FYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG----------RKYIIAFLGGFHGRTFGSISLTAS 152 (419)
T ss_dssp SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS----------CCEEEEETTCCCCSSHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh----------CCcEEEECCCcCCCCHhhHhhcCC
Confidence 677778999999999987 4699999999999999999887432 678999999999999888776654
Q ss_pred C-CcCCCCCCCCCCceEeeCC---------------------CHHHHH-hhcCC----CCeEEEEEcccCCCCCcccCCH
Q 012368 214 E-HYRSPFEPVMPGVNFVEYG---------------------NIEATR-KLIQP----GKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 214 ~-~~~~~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~----~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
. .+...+.+...++..+|++ |+++|+ ++++. +++++|++||+++++|.+++++
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~ 232 (419)
T 2eo5_A 153 KAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPK 232 (419)
T ss_dssp CGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCT
T ss_pred ccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCH
Confidence 3 3333333444456666554 367888 88762 4689999999998889888999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCC
Q 012368 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTF 345 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~ 345 (465)
+++++|+++|++||++||+||+|++||++|..++.+.+++.||++||||++++| +|+||++++++++ .+ ...+.+|+
T Consensus 233 ~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~ 310 (419)
T 2eo5_A 233 NFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTF 310 (419)
T ss_dssp THHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CC
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCC
Confidence 999999999999999999999999999998766777788999999999999999 9999999999988 77 44677899
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHHHHHHHHHCCc
Q 012368 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGL 422 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv 422 (465)
++|+++++|+.++|+.+++ +.++++++++++++.|.++ +..+++.|+|+++++. .... +.+.|+++||
T Consensus 311 ~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv 381 (419)
T 2eo5_A 311 GGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNEKKVRDR-IIGESFKRGL 381 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSCHHHHHH-HHHHHHHTTE
T ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEecCccHHH-HHHHHHHCCC
Confidence 9999999999999997643 7788888888887777543 3456788999999883 2245 8889999999
Q ss_pred eEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 423 LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 423 ~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++.+++. +++||+|++.+|++++++++++|+++++++
T Consensus 382 ~v~~~~~-~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 382 LLLPAGR-SAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999764 789999999999999999999999998764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=424.27 Aligned_cols=384 Identities=31% Similarity=0.508 Sum_probs=313.3
Q ss_pred hccccccC----CCceE-EEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHH
Q 012368 71 KLLVGTYN----RAPVV-LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIE 144 (465)
Q Consensus 71 ~~~~~~~~----~~p~~-~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~ 144 (465)
++.++++. +.|++ +++++|+++||.||++||||.++.+++++||+||+|++|+.+++++..+. ...++++...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 90 (429)
T 1s0a_A 11 RHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIE 90 (429)
T ss_dssp HHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHH
T ss_pred HhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHH
Confidence 44455443 34665 89999999999999999999999999999999999999999999875432 22456677889
Q ss_pred HHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC-cCCCCC
Q 012368 145 LAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFE 221 (465)
Q Consensus 145 la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~-~~~~~~ 221 (465)
++++|+++++ .++|+|++||+||++.++++++.+++..+. ++++||+++|+||++...++.+++... +...+.
T Consensus 91 l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~----~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 166 (429)
T 1s0a_A 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE----ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC----CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCC----CCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence 9999999985 889999999999999999988766532111 378999999999999877766554221 111222
Q ss_pred CCCCCceEee-----------CCCHHHHHhhcCC--CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012368 222 PVMPGVNFVE-----------YGNIEATRKLIQP--GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 222 ~~~~~~~~~~-----------~~d~~~le~~l~~--~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
+..+++..++ ..|+++|+++++. .++++|+++|+ ++++|.++++++++++|+++|++||++||+||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De 246 (429)
T 1s0a_A 167 GYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADE 246 (429)
T ss_dssp TTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEee
Confidence 2223333322 2478999998862 47899999999 88889888999999999999999999999999
Q ss_pred cccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-----CCcCCCCChHHHHHHHHHHHHH
Q 012368 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNAAIAVLDK 361 (465)
Q Consensus 288 v~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~~aa~a~L~~ 361 (465)
+|+|||++|..++++.+++.||++||||++++| +|+|++++++++++.+... .+.+|+++|+++++|+.++|+.
T Consensus 247 ~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~ 326 (429)
T 1s0a_A 247 IATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAI 326 (429)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHH
T ss_pred hhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 999999988766777788899999999999999 9999999999998888653 2567899999999999999998
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCCCCEEEEecCC
Q 012368 362 ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPL 439 (465)
Q Consensus 362 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~ 439 (465)
+.++++.++++++++++++.|+++. .++.+..+++.|+++++++. .+..++.+.|+++||++.+.+ +++||++++
T Consensus 327 ~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~--~~iRis~~~ 403 (429)
T 1s0a_A 327 LESGDWQQQVADIEVQLREQLAPAR-DAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFG--KLIYLMPPY 403 (429)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHGGGG-GCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCBT--TEEEECCCT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEEeeEEEEEEECCcccHHHHHHHHHHCCCEEeccC--CEEEEECCC
Confidence 8777888999999999998887653 35656567788999999884 357789999999999998864 789999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhh
Q 012368 440 IISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 440 ~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+|++++++++++|+++++++.
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSGG
T ss_pred CCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999876543
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-52 Score=418.03 Aligned_cols=391 Identities=34% Similarity=0.581 Sum_probs=322.8
Q ss_pred HHHHHHHHhccccccCC-CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCH
Q 012368 63 KEVMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSI 140 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~ 140 (465)
+++.++..++.++.+.. .|+++++++|+++||.+|++||||.++.++.++||+||+|++++.+++++..+.. ..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~ 84 (426)
T 1sff_A 5 KELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYE 84 (426)
T ss_dssp HHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECH
T ss_pred HHHHHHHHHhcCccccccCCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCH
Confidence 44555555666665554 5889999999999999999999999999888999999999999999987654322 345667
Q ss_pred HHHHHHHHHHhhc-C-C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-Cc
Q 012368 141 PQIELAKRLVACS-F-A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HY 216 (465)
Q Consensus 141 ~~~~la~~l~~~~-~-~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~ 216 (465)
...+|+++|++++ + . ++|++++||++|++.++++++.+++ +++||+++|+||++....+...+.. .+
T Consensus 85 ~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~---------~~~vi~~~p~y~~~~~~~~~~~g~~~~~ 155 (426)
T 1sff_A 85 PYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK---------RSGTIAFSGAYHGRTHYTLALTGKVNPY 155 (426)
T ss_dssp HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHHSSCCTTT
T ss_pred HHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCCchHhhhhcCCcccc
Confidence 7889999999998 5 4 8999999999999999997766654 3489999999999987666554332 22
Q ss_pred CCCCCCCCCCceEeeCC----------CHHHHHhhcCC----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCE
Q 012368 217 RSPFEPVMPGVNFVEYG----------NIEATRKLIQP----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL 282 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~----------d~~~le~~l~~----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l 282 (465)
+..+.+...++..+|.+ |+++|+++++. .++++|+++|+++++|.+.++++++++|.++|++||++
T Consensus 156 ~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~ 235 (426)
T 1sff_A 156 SAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIM 235 (426)
T ss_dssp TTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCE
T ss_pred ccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 22333333445445542 68899988862 46889999999888887889999999999999999999
Q ss_pred EEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHh
Q 012368 283 LVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362 (465)
Q Consensus 283 lI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~ 362 (465)
||+||+|+||++.|..+.++.+++.||+++|||++++|+|+||+++++++++.+....+..+++.|+++++++.++|+.+
T Consensus 236 li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~ 315 (426)
T 1sff_A 236 LIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVF 315 (426)
T ss_dssp EEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH
T ss_pred EEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999888766677788889999999999999999999999999998876567788999999999999999988
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCceEeecCC-CC
Q 012368 363 SNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGK-GN 431 (465)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~~~-~~ 431 (465)
.++++.++++++++++++.|+++...++.+..+++.|.++++++.. ...++.+.|+++||++.++.. ++
T Consensus 316 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~ 395 (426)
T 1sff_A 316 EQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYN 395 (426)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSC
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCC
Confidence 6678899999999999999988765577666667789999999831 246788999999999998763 47
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 432 VVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 432 ~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++||++++.++++++++++++|++++++++|
T Consensus 396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~~ 426 (426)
T 1sff_A 396 VLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 426 (426)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999987653
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=403.37 Aligned_cols=377 Identities=48% Similarity=0.851 Sum_probs=315.1
Q ss_pred ccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC
Q 012368 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA 155 (465)
Q Consensus 76 ~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 155 (465)
.+.+.|+++.+++|+++||.+|++||||.++.+++++||++|++.+|+.+++++..+....++.+...+++++|+++++.
T Consensus 18 ~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~ 97 (397)
T 2ord_A 18 TYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFG 97 (397)
T ss_dssp CCCCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTS
T ss_pred cccCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCC
Confidence 45568999999999999999999999999998889999999999999999998754433334567789999999999999
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (465)
++|++++||++|+..++++++.+..... +++++||+++++||+....++...+...+..++.|...++..+|++|+
T Consensus 98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~----~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~ 173 (397)
T 2ord_A 98 GKVFFANTGTEANEAAIKIARKYGKKKS----EKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV 173 (397)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHC----TTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCC----CCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH
Confidence 9999999999999999998875421000 025689999999999987555544333222233455566778888999
Q ss_pred HHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecc
Q 012368 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315 (465)
Q Consensus 236 ~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK 315 (465)
++|++++++ ++++|+++|.++++|.++++.+++++|+++|++||++||+||+|+||++.|..+....++..||++||||
T Consensus 174 ~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK 252 (397)
T 2ord_A 174 EDLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAK 252 (397)
T ss_dssp HHHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECG
T ss_pred HHHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeecc
Confidence 999999974 6899999998888887678999999999999999999999999999988887655566777899999999
Q ss_pred cCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
++++|+|+|+++++++++ .+....+..+++.|+++++++.++|+.+.++++.++++++.+++++.|+++...++.+..+
T Consensus 253 ~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 331 (397)
T 2ord_A 253 GLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADV 331 (397)
T ss_dssp GGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred ccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 999999999999998887 7765556788999999999999999988777789999999999999998865456655556
Q ss_pred eccceEEEEEecC--ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 396 RGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 396 ~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.|.++++.+.. ...++.+.|+++||.+.+++. +.+||++++.++++++++++++|++++++
T Consensus 332 ~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 332 RGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGN-NTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp EEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEeEEEEEEECChHHHHHHHHHHHHCCCEEccCCC-CEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 7789999998843 477899999999999998764 78999999999999999999999998764
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=398.27 Aligned_cols=380 Identities=39% Similarity=0.712 Sum_probs=313.7
Q ss_pred HHHHHHhccc---cccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 012368 65 VMEAEKKLLV---GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141 (465)
Q Consensus 65 ~~~~~~~~~~---~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~ 141 (465)
+.+.+.+|.+ ..|.+.|+++++++|+++||.+|++||||.++.+++++||.+|.+++++.+++++..+....++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~ 88 (395)
T 1vef_A 9 WRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 88 (395)
T ss_dssp CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHH
T ss_pred HHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHH
Confidence 3344444443 6677889999999999999999999999999988889999999999999999987544333456777
Q ss_pred HHHHHHHHHhhc--CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 142 QIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~--~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
..++++++++++ +.++|++++||++|+..++++++.++ ++++||+++++||+.........+.......
T Consensus 89 ~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~---------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~ 159 (395)
T 1vef_A 89 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT---------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREP 159 (395)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH---------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGG
T ss_pred HHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh---------CCCeEEEEcCCcCCCchhhhhhcCCcccccc
Confidence 899999999999 47899999999999999999876444 4788999999999988765554433221112
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+.|...++..++++|+++|++++++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+||++.|..+
T Consensus 160 ~~p~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~ 238 (395)
T 1vef_A 160 FLPLVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF 238 (395)
T ss_dssp GCSCSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cCCCCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh
Confidence 2344455666777899999999974 689999999988888888899999999999999999999999999998887765
Q ss_pred cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012368 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
..+..++.+|+++|||++++|+|+|++++++++++.+....+..+++.++++++++.++|+.+.++++.++++++.++++
T Consensus 239 ~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~ 318 (395)
T 1vef_A 239 AFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFM 318 (395)
T ss_dssp THHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56677888999999999999999999999999988887655677888999999999999998765667888888888888
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+.|+++ ..+.+..+++.|.++++.++....++.+.|+ ++||.+.+++. +++||++++.++++++++++++|++++
T Consensus 319 ~~l~~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 319 EKLRAI--PSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGP-TVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHTS--CCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--hcCceEEEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCC-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 877654 1233344567788999988545778999999 99999998754 799999999999999999999998875
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-48 Score=382.68 Aligned_cols=369 Identities=43% Similarity=0.775 Sum_probs=306.4
Q ss_pred ccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc
Q 012368 74 VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS 153 (465)
Q Consensus 74 ~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 153 (465)
.+.+.+.|+++++++|+++||.+|+.||||.++.+++++||.+|.+.+++.+++++..+....|+.....+++++|++++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~ 83 (375)
T 2eh6_A 4 MNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHF 83 (375)
T ss_dssp CSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTS
T ss_pred cccCcCCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhc
Confidence 44566789999999999999999999999999988789999999999999999876533333456667889999999999
Q ss_pred CC-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee
Q 012368 154 FA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231 (465)
Q Consensus 154 ~~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (465)
+. ++|++++||++|+..++++++.++.. +. ++ ++|++++|+||++...+...++...+...+.+...++..+|
T Consensus 84 g~~~~v~~~~g~t~a~~~~~~~~~~~~~~-~~----~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (375)
T 2eh6_A 84 WTEGKVFFANSGTESVEAAIKLARKYWRD-KG----KNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAK 158 (375)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHHHHH-TT----CCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEEC
T ss_pred CCCCeEEEeCchHHHHHHHHHHHHHHhcc-CC----CCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCC
Confidence 86 99999999999999999976555400 00 34 89999999999998777665544433323345555677788
Q ss_pred CCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE
Q 012368 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311 (465)
Q Consensus 232 ~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~ 311 (465)
+.|+++|++++++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|++|++.+..+....++..+|++
T Consensus 159 ~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~ 237 (375)
T 2eh6_A 159 LNDIDSVYKLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237 (375)
T ss_dssp TTCHHHHHTTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred CchHHHHHHHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE
Confidence 8899999999974 689999999988889888899999999999999999999999999998877655566677789999
Q ss_pred EecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012368 312 TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 312 t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
+|||++++|+|+|++++++++++.+.+..+..+++.++++++++.++|+.+. ++.++++++.+++++.|+++ +.
T Consensus 238 s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~~ 311 (375)
T 2eh6_A 238 ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKEL----GK 311 (375)
T ss_dssp EECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT----TS
T ss_pred EEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----hc
Confidence 9999999999999999999999888765567788899999999999998765 67778888888887777653 32
Q ss_pred ceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 392 VKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
..+++.|.+++++++.+..++++.|+++||.+.+++. +++|+++++.++++++++++++|+++
T Consensus 312 -~~~~~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 312 -GKVKGRGLMLGLELERECKDYVLKALEKGLLINCTAG-KVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp -SEEEEETTEEEEECSSCCHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -CCceEEEEEEEEEEcCcHHHHHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456778999998855577899999999999998754 78999999999999999999999875
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=339.07 Aligned_cols=358 Identities=11% Similarity=0.069 Sum_probs=265.0
Q ss_pred ccCCCceEEEeeeccEEEeCC--CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc
Q 012368 76 TYNRAPVVLASGKGCKLYDAE--GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS 153 (465)
Q Consensus 76 ~~~~~p~~~~~~~G~~~~d~d--G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 153 (465)
.|...+++..+++|+++||.+ |++||||..+. ..+ +.+|+|++|+.+++++..+.+.....+..+++++++++.+
T Consensus 37 ~y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~--~~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~ 113 (421)
T 3l8a_A 37 RYDFTTRPDRLNQFTYKWKTSENNPELLQMWVAD--MDF-LPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEH 113 (421)
T ss_dssp -CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSSC--CCS-CCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHH
T ss_pred hccCCcccccCCCCCccccccCCCCCeeecccCC--CCC-CCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 456667888899999999999 89999997764 233 4899999999999987444333344556788889988876
Q ss_pred C----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCce
Q 012368 154 F----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVN 228 (465)
Q Consensus 154 ~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~ 228 (465)
+ .++|+|++||+||++.+++++.. ++++|++++|+||++...+...+..... .+.. .+..
T Consensus 114 g~~~~~~~v~~~~g~~ea~~~a~~~~~~-----------~gd~Vi~~~~~y~~~~~~~~~~g~~~~~----~~~~~~~~~ 178 (421)
T 3l8a_A 114 DYAVVKEDILFIDGVVPAISIALQAFSE-----------KGDAVLINSPVYYPFARTIRLNDHRLVE----NSLQIINGR 178 (421)
T ss_dssp CCCCCGGGEEEESCHHHHHHHHHHHHSC-----------TEEEEEEEESCCHHHHHHHHHTTEEEEE----EECEEETTE
T ss_pred CCCCCHHHEEEcCCHHHHHHHHHHHhcC-----------CCCEEEECCCCcHHHHHHHHHCCCEEEe----ccccccCCC
Confidence 5 67899999999999999997641 5789999999999987655443322111 0110 0000
Q ss_pred EeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cc-----c
Q 012368 229 FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-----E 302 (465)
Q Consensus 229 ~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~-----~ 302 (465)
+. .|+++|+++++..++++|++++.++++| .+++++++++|+++|++||++||+||+|++|+++|... .+ +
T Consensus 179 ~~--~d~~~le~~i~~~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 255 (421)
T 3l8a_A 179 FE--IDFEQLEKDIIDNNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDAS 255 (421)
T ss_dssp EE--CCHHHHHHHHHHTTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTT
T ss_pred ee--eCHHHHHHHhhccCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCch
Confidence 00 2899999999734678888888777777 56788899999999999999999999999998877421 11 2
Q ss_pred ccCCcccEEEecccCC-CccceeeEEeC-HHHHhhccCCC-CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012368 303 HYGIFPDIMTLAKPLA-GGLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 303 ~~~~~pdi~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
..+..+++.++||+++ +|+|+|+++++ +++++.+.... ...++++|+++++++.++|+.. +++.+++.+..+.++
T Consensus 256 ~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~--~~~~~~~~~~~~~~~ 333 (421)
T 3l8a_A 256 YKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG--KPWLEELKTVIEGNI 333 (421)
T ss_dssp GGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred hcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHH
Confidence 2355677889999998 68999999998 89988886543 3345689999999999999853 334444444444444
Q ss_pred HHHHHHHHcCCCceeeeccceEEE-EEec---CChHHHHHHHHH-CCceEeecC-----CCCEEEEecCCCCcHHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRGLGLIIG-IEFD---VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~-i~~~---~~~~~~~~~l~~-~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~ 449 (465)
+.|.+.++++|.+..+++.|.++. +++. .+..++.+.|++ +||++.++. ..+++||+++ +++++|+++
T Consensus 334 ~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~ 411 (421)
T 3l8a_A 334 KLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEA 411 (421)
T ss_dssp HHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHH
T ss_pred HHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHH
Confidence 444444444355666677776655 7774 356789999985 599998752 1378999877 589999999
Q ss_pred HHHHHHHHH
Q 012368 450 VEILCKTLP 458 (465)
Q Consensus 450 l~~l~~~l~ 458 (465)
+++|+++++
T Consensus 412 l~~l~~~l~ 420 (421)
T 3l8a_A 412 LSRIISVFG 420 (421)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 999998864
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=317.49 Aligned_cols=346 Identities=14% Similarity=0.054 Sum_probs=267.6
Q ss_pred CCceEEE-eeeccEEEeCCCCEEEecccCcccccCC-CCCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHHh
Q 012368 79 RAPVVLA-SGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVA 151 (465)
Q Consensus 79 ~~p~~~~-~~~G~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~ 151 (465)
+.+.++. +++|+++|| ||++||||.++. ++| |.||+|++++.+++.+...... .+..+...+++++|++
T Consensus 45 r~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~ 120 (427)
T 2w8t_A 45 PFAIVMEQVKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRD 120 (427)
T ss_dssp TTCCCCSEEEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHH
T ss_pred eeeeeccccCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHH
Confidence 4455677 999999999 999999999985 478 6999999999999887432111 1245668999999999
Q ss_pred hcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee
Q 012368 152 CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231 (465)
Q Consensus 152 ~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (465)
+++.+.+++++||++|+..+++++. + +++.|++..++|.... ..+...+ ..+..+|
T Consensus 121 ~~g~~~~i~~~sGs~a~~~al~~l~---~--------~gd~vl~~~~~h~~~~-~~~~~~g------------~~~~~~~ 176 (427)
T 2w8t_A 121 FYGTTGAIVFSTGYMANLGIISTLA---G--------KGEYVILDADSHASIY-DGCQQGN------------AEIVRFR 176 (427)
T ss_dssp HHTCSEEEEESCHHHHHHHHHHHHS---C--------TTCEEEEETTCCHHHH-HHHHHSC------------SEEEEEC
T ss_pred HhCCCceEEecCcHHHHHHHHHHhc---C--------CCCEEEECCcccHHHH-HHHHHcC------------CeeEEeC
Confidence 9997888999999999999888653 2 5777888777664433 3332222 2334567
Q ss_pred CCCHHHHHhhcCCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC--CCCCccccccccCC
Q 012368 232 YGNIEATRKLIQPG---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYGI 306 (465)
Q Consensus 232 ~~d~~~le~~l~~~---~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--gr~g~~~~~~~~~~ 306 (465)
++|+++|+++++.. ++++|+++++++++|.+.+ +++|+++|++||++||+||+|+++ +++|.+ ..+.+++
T Consensus 177 ~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~ 251 (427)
T 2w8t_A 177 HNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGL 251 (427)
T ss_dssp TTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTC
T ss_pred CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCC
Confidence 78999999999642 6899999999988898776 999999999999999999999974 333333 3445666
Q ss_pred ccc----EEEecccCCCccceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Q 012368 307 FPD----IMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFK 379 (465)
Q Consensus 307 ~pd----i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~ 379 (465)
.+| +.||||++| .+.|++++++++++.+.... ...+++.+++.++++.++|+.+.. ++..++++++.++++
T Consensus 252 ~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~ 329 (427)
T 2w8t_A 252 EGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALH 329 (427)
T ss_dssp TTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 555 668999996 45699999999998886542 234567889999999999998765 678889999999999
Q ss_pred HHHHHHHHcCCCceeeec-cceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRG-LGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~-~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l 450 (465)
+.|+++ .++. ..++ .|.++++.+.. ...++.+.|+++||++.++.. .+++||+++..+|++++++++
T Consensus 330 ~~L~~~--g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~ 405 (427)
T 2w8t_A 330 GGLKAM--GFRL--GTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVL 405 (427)
T ss_dssp HHHHHH--TCEE--SCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHc--CCcc--cCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 988875 3321 1133 67888888842 356799999999999987632 258999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 012368 451 EILCKTLPVLDSN 463 (465)
Q Consensus 451 ~~l~~~l~~~~~~ 463 (465)
++|+++++++...
T Consensus 406 ~~l~~~l~~~~~~ 418 (427)
T 2w8t_A 406 GMFQAAGRAVGVI 418 (427)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCcc
Confidence 9999999887543
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=303.59 Aligned_cols=345 Identities=18% Similarity=0.214 Sum_probs=265.2
Q ss_pred cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCC-CCCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHH
Q 012368 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLV 150 (465)
Q Consensus 77 ~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~ 150 (465)
+.+.|..+++++|.++|| +|++||||.++ .++| |++|++.+++.+++.+..+... .+..+...+++++++
T Consensus 23 ~~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 98 (399)
T 3tqx_A 23 LYKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDIS 98 (399)
T ss_dssp CCCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHH
T ss_pred CccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHH
Confidence 345677888999999999 99999999998 4678 7999999999999887533211 124456889999999
Q ss_pred hhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEe
Q 012368 151 ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV 230 (465)
Q Consensus 151 ~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (465)
++++.+..+++++|++|+..+++.+. + +++.|++.+|+|++....+ ...+ ..+..+
T Consensus 99 ~~~~~~~~i~~~sGt~a~~~~l~~~~---~--------~gd~v~~~~~~~~~~~~~~-~~~g------------~~~~~~ 154 (399)
T 3tqx_A 99 EFLGTDDTILYSSCFDANGGLFETLL---G--------PEDAIISDELNHASIIDGI-RLCK------------AQRYRY 154 (399)
T ss_dssp HHHTCSEEEEESCHHHHHHTTHHHHC---C--------TTCEEEEETTCCHHHHHHH-HSCC------------SEEEEE
T ss_pred HHHCCCcEEEECchHHHHHHHHHHhc---C--------CCCEEEECCcccHHHHHHH-HHcC------------CceeEe
Confidence 99997777788889999999888654 1 6788998888876654332 2211 223456
Q ss_pred eCCCHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CC-CCCCccccccc
Q 012368 231 EYGNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLWAHEH 303 (465)
Q Consensus 231 ~~~d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-gr~g~~~~~~~ 303 (465)
|..|+++|+++++. .++++|++++.++++|.+.+ +++|.++|++||++||+||+|. |+ +..+.. ....
T Consensus 155 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~ 229 (399)
T 3tqx_A 155 KNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TPEY 229 (399)
T ss_dssp CTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHH
T ss_pred CCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHHh
Confidence 66789999998863 16888889888888887765 9999999999999999999994 53 333332 3455
Q ss_pred cCC--cccEE--EecccCCCccceeeEEeCHHHHhhccCCCC--cCCCCChHHHHHHHHHHHHHh-c-CchHHHHHHHHH
Q 012368 304 YGI--FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKI-S-NPAFLASVSKKG 375 (465)
Q Consensus 304 ~~~--~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~--~~t~~~~~~~~~aa~a~L~~~-~-~~~~~~~~~~~~ 375 (465)
+++ .+|++ ++||+++ |++.|++++++++++.+..... ..+.+.+++.++++.++++.+ + .++..++++++.
T Consensus 230 ~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (399)
T 3tqx_A 230 CGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENS 308 (399)
T ss_dssp HTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 565 67887 8999998 6788999999999888764321 234467899999999999876 3 256777888888
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHH
Q 012368 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~ 447 (465)
+++.+.|+++ .+. ..++.|.++++.++. +..++.+.|+++||.+.+... .+++|++++..+++++++
T Consensus 309 ~~l~~~L~~~--g~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~ 383 (399)
T 3tqx_A 309 RYFRAGMEKL--GFQ---LVPGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLD 383 (399)
T ss_dssp HHHHHHHHHH--TCC---BCCCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHH
T ss_pred HHHHHHHHHc--CCC---cCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHH
Confidence 8888888776 222 336678888888742 467899999999999986531 258999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 012368 448 QAVEILCKTLPVL 460 (465)
Q Consensus 448 ~~l~~l~~~l~~~ 460 (465)
+++++|+++++++
T Consensus 384 ~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 384 RAIEAFGQVGKKL 396 (399)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=303.84 Aligned_cols=343 Identities=15% Similarity=0.056 Sum_probs=246.9
Q ss_pred EeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC----CCeEEe
Q 012368 85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADRVFF 160 (465)
Q Consensus 85 ~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~v~~ 160 (465)
.+++|+++||.||++||||.++.. +++ .+|+|++|+.+++.+..+.+.....+.++++++++.+.++ .++|++
T Consensus 10 ~~~~g~~~~d~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~ 86 (377)
T 3fdb_A 10 LRARNTMKWTRYGQGVLPLWVAES--DFS-TCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWIFP 86 (377)
T ss_dssp HHHTCCHHHHSSCTTSEECCSSCC--CSC-CCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred hcCCCCceeeccCCCeeeecccCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEE
Confidence 379999999999999999998853 454 8899999999998763222111224557777777776543 679999
Q ss_pred cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC---CCHHH
Q 012368 161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---GNIEA 237 (465)
Q Consensus 161 ~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~ 237 (465)
|+||++|+..+++.+. .++++|++.+|+||++...+...+.. +..+|. .|+++
T Consensus 87 t~g~~~a~~~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~d~~~ 142 (377)
T 3fdb_A 87 IPDVVRGLYIAIDHFT-----------PAQSKVIVPTPAYPPFFHLLSATQRE-------------GIFIDATGGINLHD 142 (377)
T ss_dssp ESCHHHHHHHHHHHHS-----------CTTCCEEEEESCCTHHHHHHHHHTCC-------------EEEEECTTSCCHHH
T ss_pred eCChHHHHHHHHHHhc-----------CCCCEEEEcCCCcHhHHHHHHHcCCE-------------EEEccCCCCCCHHH
Confidence 9999999999998764 15789999999999987655443322 222333 28999
Q ss_pred HHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-c----cccccccCCcccEEE
Q 012368 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-Y----LWAHEHYGIFPDIMT 312 (465)
Q Consensus 238 le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g-~----~~~~~~~~~~pdi~t 312 (465)
|+++++++..++++++|.|+ +|. .++.+.+++|+++|++||+++|+||+|+++++.| . .......+..+++.+
T Consensus 143 l~~~l~~~~~~v~i~~p~np-tG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s 220 (377)
T 3fdb_A 143 VEKGFQAGARSILLCNPYNP-LGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITA 220 (377)
T ss_dssp HHHHHHTTCCEEEEESSBTT-TTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEEC
T ss_pred HHHHhccCCCEEEEeCCCCC-CCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEe
Confidence 99999865556666777444 454 4578889999999999999999999999987776 2 112222334466778
Q ss_pred ecccCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-C
Q 012368 313 LAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-N 389 (465)
Q Consensus 313 ~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~ 389 (465)
+||.+| +|+|+||+++ ++++++.+.......+++.|+++++++.++|+.. +++.++.++.....++.+.+.+.+ +
T Consensus 221 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (377)
T 3fdb_A 221 PSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG--TDFLNQEVAYLKNNHDFLLHEIPKRI 298 (377)
T ss_dssp STTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999997 5899998776 7888888876555667889999999999999853 233344444444444444444433 4
Q ss_pred CCceeeeccceE-EEEEecC--ChHHHHHHHHHC-CceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 390 PHVKDVRGLGLI-IGIEFDV--SATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 390 ~~~~~~~~~g~~-~~i~~~~--~~~~~~~~l~~~-Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|.+....+.+.+ +++.+.. ...++...|+++ ||.+.++.. ++++|++++ .+++++++++++|+++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 299 PGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp TTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHTTC
T ss_pred CCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHhhc
Confidence 444444444444 4677742 235678888776 999987631 378999877 38999999999999988653
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=297.15 Aligned_cols=348 Identities=16% Similarity=0.161 Sum_probs=262.4
Q ss_pred cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC--CC---CCHHHHHHHHHHH
Q 012368 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN--MY---YSIPQIELAKRLV 150 (465)
Q Consensus 77 ~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~--~~---~~~~~~~la~~l~ 150 (465)
+.+.|..+++++|+++||.||++||||.++ +++|| ++|++.+++.+++.+....+. .+ ..+...+++++|+
T Consensus 24 ~~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 100 (401)
T 1fc4_A 24 LFKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA 100 (401)
T ss_dssp CCCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred CeeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHH
Confidence 345788899999999999999999999998 35896 899999999999876432111 11 2456889999999
Q ss_pred hhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEe
Q 012368 151 ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV 230 (465)
Q Consensus 151 ~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (465)
++++.+..+++++|++|+..+++.+. + +++.|++.+++|.... ......+ ..+..+
T Consensus 101 ~~~g~~~~i~~~sGs~a~~~~~~~~~---~--------~gd~v~~~~~~~~~~~-~~~~~~g------------~~~~~~ 156 (401)
T 1fc4_A 101 AFLGMEDAILYSSCFDANGGLFETLL---G--------AEDAIISDALNHASII-DGVRLCK------------AKRYRY 156 (401)
T ss_dssp HHHTCSEEEEESCHHHHHHTTHHHHC---C--------TTCEEEEETTCCHHHH-HHHHTSC------------SEEEEE
T ss_pred HHhCCCcEEEeCChHHHHHHHHHHHc---C--------CCCEEEEcchhHHHHH-HHHHHcC------------CceEEE
Confidence 99986677788889999999888653 1 5778888887764433 2222211 223445
Q ss_pred eCCCHHHHHhhcCC--C---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCC-CCCccccccc
Q 012368 231 EYGNIEATRKLIQP--G---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLG-RTGYLWAHEH 303 (465)
Q Consensus 231 ~~~d~~~le~~l~~--~---~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g-r~g~~~~~~~ 303 (465)
|..|+++|+++++. . ++++|++++.++++|.+.+ +++|.++|++||++||+||+|. |+. +.|..+ ...
T Consensus 157 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~ 231 (401)
T 1fc4_A 157 ANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEY 231 (401)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHH
T ss_pred CCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHH
Confidence 66789999998863 1 5778888887777787765 9999999999999999999995 873 455432 223
Q ss_pred cCCc--ccEE--EecccCCCccceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHH
Q 012368 304 YGIF--PDIM--TLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGH 376 (465)
Q Consensus 304 ~~~~--pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~ 376 (465)
.++. .|++ ++||+++++. .|++++++++++.+.... +..+++.++++++++.++|+.+.. ++..++++++.+
T Consensus 232 ~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 310 (401)
T 1fc4_A 232 CDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANAR 310 (401)
T ss_dssp TTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3443 3676 7899996654 499999999988876432 223667899999999999987743 567788888888
Q ss_pred HHHHHHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHH
Q 012368 377 YFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 377 ~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~ 448 (465)
++.+.|++. .+. ..++.|.++++.++. +..++.+.|.++||.+.++.. .+++|++++..++++++++
T Consensus 311 ~l~~~L~~~--g~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~ 385 (401)
T 1fc4_A 311 QFREQMSAA--GFT---LAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITR 385 (401)
T ss_dssp HHHHHHHHT--TCC---BCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHc--CCc---ccCCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHH
Confidence 888887764 222 224678899988842 456789999999999987642 2579999998899999999
Q ss_pred HHHHHHHHHHHhhh
Q 012368 449 AVEILCKTLPVLDS 462 (465)
Q Consensus 449 ~l~~l~~~l~~~~~ 462 (465)
++++|+++++++.-
T Consensus 386 ~~~~l~~~~~~~~~ 399 (401)
T 1fc4_A 386 AVEAFTRIGKQLGV 399 (401)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987754
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=300.96 Aligned_cols=355 Identities=12% Similarity=0.063 Sum_probs=255.0
Q ss_pred eEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC----CCe
Q 012368 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADR 157 (465)
Q Consensus 82 ~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~ 157 (465)
++..+++|+++||.+|++||||..+.. .+ +.+|.|++++.+++.+..+.+.....+.++++++++++.++ .++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIAEM--DF-KIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSSCC--SS-CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceeccccCC--CC-CCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 566789999999999999999998743 34 48999999999998764332222234557888888888765 679
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEeeCCCHH
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFVEYGNIE 236 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ 236 (465)
|++++||++|+..+++.+. .++++|++.+|+||++...+...+...... +.. .+..+. .|++
T Consensus 88 i~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~--~d~~ 150 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQFT-----------SPGDQILVQEPVYNMFYSVIEGNGRRVISS----DLIYENSKYS--VNWA 150 (391)
T ss_dssp EEEESCHHHHHHHHHHHHS-----------CTTCEEEECSSCCHHHHHHHHHTTCEEEEC----CCEEETTEEE--CCHH
T ss_pred EEECCCHHHHHHHHHHHhC-----------CCCCeEEECCCCcHHHHHHHHHcCCEEEEe----eeeecCCcee--ecHH
Confidence 9999999999999999764 168899999999999876555443322111 110 011110 3899
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccccCC-ccc----E
Q 012368 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGI-FPD----I 310 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~~-~pd----i 310 (465)
+|+++++..++++|+++..++++|. .++.+.+++|+++|++||++||+||+|+++.+.|. .......+. .+| +
T Consensus 151 ~l~~~l~~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~ 229 (391)
T 3dzz_A 151 DLEEKLATPSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSL 229 (391)
T ss_dssp HHHHHHTSTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEE
T ss_pred HHHHHHhccCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEE
Confidence 9999997446677666555555665 45788899999999999999999999999877764 223333322 266 5
Q ss_pred EEecccCC-CccceeeEEeC-HHHHhhccCCC-CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 012368 311 MTLAKPLA-GGLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLA 387 (465)
Q Consensus 311 ~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 387 (465)
.++||++| +|+|+|+++++ +++++.+.... ...+++.++++++++.++|+.. +++.+++++.....++.+.+.+.
T Consensus 230 ~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~ 307 (391)
T 3dzz_A 230 ISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG--HDWLRELKQVLRDNFAYAREFLA 307 (391)
T ss_dssp ECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899998 68999999997 88888876432 2455778999999999999863 33344444444444444444444
Q ss_pred c-CCCceeeecc-ceEEEEEec---CChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 388 R-NPHVKDVRGL-GLIIGIEFD---VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 388 ~-~~~~~~~~~~-g~~~~i~~~---~~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+ +|.+....+. +.++++.+. .+..++.+.|+ ++||.+.++. . .+++|++++ ++++++++++++|.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~ 385 (391)
T 3dzz_A 308 KEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQG 385 (391)
T ss_dssp HHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred hhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 4 4444443444 445567773 36788999996 8999998753 1 378999877 6899999999999999
Q ss_pred HHHhh
Q 012368 457 LPVLD 461 (465)
Q Consensus 457 l~~~~ 461 (465)
+++++
T Consensus 386 l~~~~ 390 (391)
T 3dzz_A 386 VLNLN 390 (391)
T ss_dssp HHTCC
T ss_pred HHHhh
Confidence 98754
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=290.88 Aligned_cols=353 Identities=11% Similarity=0.072 Sum_probs=231.7
Q ss_pred EEEeeeccEEEeCCCC-----EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH-HHHHHHHHHHhhcC--
Q 012368 83 VLASGKGCKLYDAEGR-----EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSF-- 154 (465)
Q Consensus 83 ~~~~~~G~~~~d~dG~-----~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~~-- 154 (465)
+-.+++|+++||.+|+ ++|||..+.. .+| .+|.|.+++.+++......+.....+ .++++++++.+.++
T Consensus 8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~ 84 (390)
T 1d2f_A 8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTA 84 (390)
T ss_dssp ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCC
Confidence 3458999999999998 7899987754 567 78999999999986532221212445 66777777766554
Q ss_pred --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEee
Q 012368 155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVE 231 (465)
Q Consensus 155 --~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 231 (465)
.++|++++||++|++.+++++. .++++|++.+|+||++...+...+..... .+...+ ..+.
T Consensus 85 ~~~~~v~~t~g~~~al~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~~- 148 (390)
T 1d2f_A 85 IDSQTVVYGPSVIYMVSELIRQWS-----------ETGEGVVIHTPAYDAFYKAIEGNQRTVMP----VALEKQADGWF- 148 (390)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHSS-----------CTTCEEEEEESCCHHHHHHHHHTTCEEEE----EECEECSSSEE-
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhc-----------CCCCEEEEcCCCcHHHHHHHHHCCCEEEE----eecccCCCccc-
Confidence 6789999999999999999664 15789999999999987665443322111 011100 0000
Q ss_pred CCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccccCCc-cc
Q 012368 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIF-PD 309 (465)
Q Consensus 232 ~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~~~~-pd 309 (465)
.|+++|++++++.++++|++...++++|.+ ++.+++++|.++|++||++||+||+|+++.+.|..+ .....+.. +|
T Consensus 149 -~d~~~l~~~l~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d 226 (390)
T 1d2f_A 149 -CDMGKLEAVLAKPECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWA 226 (390)
T ss_dssp -CCHHHHHHHHTSTTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEE
T ss_pred -cCHHHHHHHhccCCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHh
Confidence 389999999975456666543334444544 577899999999999999999999999987666422 11111110 13
Q ss_pred -EEEecccCC-CccceeeEEeC-HHHHhhccCCCC-cCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 012368 310 -IMTLAKPLA-GGLPIGAALVT-EKVASAINYGDH-GSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 310 -i~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~-~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~ 384 (465)
+.++||.++ +|+|+||++++ +++++.+..... ..++ +.|+++++++.++|+.. +++.++.++.....++.+.+
T Consensus 227 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~ 304 (390)
T 1d2f_A 227 LLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIAD 304 (390)
T ss_dssp EEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHH
T ss_pred hccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHH
Confidence 788999998 69999999985 788877754333 4455 77999999999999852 34455555555555555555
Q ss_pred HHHc-CCCceeeeccc-eEEEEEec---CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHH
Q 012368 385 KLAR-NPHVKDVRGLG-LIIGIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 385 ~~~~-~~~~~~~~~~g-~~~~i~~~---~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.+.+ +|.+...++.| .++++.++ .+..++.+.|+ ++||.+.++.. ++++|++++. +++++++++++|
T Consensus 305 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l 382 (390)
T 1d2f_A 305 KMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGL 382 (390)
T ss_dssp HHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHH
T ss_pred HHHhhCCCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHH
Confidence 4444 44344444555 44567874 36778999999 68999987631 3689998875 588999999999
Q ss_pred HHHHHHh
Q 012368 454 CKTLPVL 460 (465)
Q Consensus 454 ~~~l~~~ 460 (465)
.++++++
T Consensus 383 ~~~l~~~ 389 (390)
T 1d2f_A 383 INAIRAV 389 (390)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=288.22 Aligned_cols=342 Identities=18% Similarity=0.148 Sum_probs=259.2
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhccccc-----CCCCCHHHHHHHHHHHhh
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-----NMYYSIPQIELAKRLVAC 152 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~~ 152 (465)
+.|+++++++|+++| .+|++|+||.++.+ +|+ .+|.+.+++.++++.....+ ..+..+...++++++++.
T Consensus 25 ~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 100 (398)
T 3a2b_A 25 AYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAY 100 (398)
T ss_dssp CSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred cceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence 578889999999999 89999999999854 687 88999999999987643211 122456689999999999
Q ss_pred cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC
Q 012368 153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 153 ~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
++.+++++++||++|+..+++.+. .+++.|++.+|+|.++...+... + ..+..+|.
T Consensus 101 ~g~~~v~~~~ggt~a~~~~~~~~~-----------~~gd~V~~~~p~~~~~~~~~~~~-g------------~~~~~v~~ 156 (398)
T 3a2b_A 101 VGKEAAILFSTGFQSNLGPLSCLM-----------GRNDYILLDERDHASIIDGSRLS-F------------SKVIKYGH 156 (398)
T ss_dssp HTCSEEEEESSHHHHHHHHHHHSS-----------CTTCEEEEETTCCHHHHHHHHHS-S------------SEEEEECT
T ss_pred hCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEECCccCHHHHHHHHHc-C------------CceEEeCC
Confidence 998999999999999999999764 15788999999886665332222 1 12344566
Q ss_pred CCHHHHHhhcCCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC--CCCCccccccccCCc
Q 012368 233 GNIEATRKLIQPG---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYGIF 307 (465)
Q Consensus 233 ~d~~~le~~l~~~---~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--gr~g~~~~~~~~~~~ 307 (465)
.|+++|+++++.. ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|..+ ++.+... .+.+++.
T Consensus 157 ~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~ 231 (398)
T 3a2b_A 157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLN 231 (398)
T ss_dssp TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCG
T ss_pred CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCC
Confidence 7999999998742 5788888888877787765 899999999999999999999754 3333322 3334543
Q ss_pred --ccEE--EecccCCC-ccceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Q 012368 308 --PDIM--TLAKPLAG-GLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFK 379 (465)
Q Consensus 308 --pdi~--t~sK~lg~-G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~ 379 (465)
+|++ ++||+++. | ||+++++++++.+... .+..+...+++.++++.++|+.++. ++..++++++.+++.
T Consensus 232 ~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~ 308 (398)
T 3a2b_A 232 DDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAK 308 (398)
T ss_dssp GGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred cCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 5777 89999984 5 9999999998887642 1344455667766677788876532 456777788888888
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
+.|+++ .+. ..++.|.++++.++. +..++.+.|+++||.+.++.. .+++|++++..+++++++++++
T Consensus 309 ~~L~~~--g~~---~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~ 383 (398)
T 3a2b_A 309 AQLLDH--GFD---LGATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIE 383 (398)
T ss_dssp HHHHHT--TCC---BCSCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHH
T ss_pred HHHHhc--CCC---cCCCCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHH
Confidence 777664 222 234568888888742 356799999999999988642 3689999998889999999999
Q ss_pred HHHHHHHHhh
Q 012368 452 ILCKTLPVLD 461 (465)
Q Consensus 452 ~l~~~l~~~~ 461 (465)
+|+++++++.
T Consensus 384 ~l~~~l~~~~ 393 (398)
T 3a2b_A 384 KMVKVFKQAE 393 (398)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhC
Confidence 9999987653
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=294.78 Aligned_cols=356 Identities=13% Similarity=0.062 Sum_probs=247.9
Q ss_pred EEEeeeccEEEeCCCC-------EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-
Q 012368 83 VLASGKGCKLYDAEGR-------EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF- 154 (465)
Q Consensus 83 ~~~~~~G~~~~d~dG~-------~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~- 154 (465)
+..+++|+++||.+|+ +++||.++.. .++ .+|.|.+++.++++.....+.....+.++++++++.+.++
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~ 85 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQW 85 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 3457999999999884 7899988753 455 6899999999998753221111123345666666655444
Q ss_pred ---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEe
Q 012368 155 ---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFV 230 (465)
Q Consensus 155 ---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 230 (465)
.++|++|+||++|+..+++.+. .++++|++.+|+||++...+...+..... .+.. .+..+.
T Consensus 86 ~~~~~~v~~t~g~~~a~~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~g~~~ 150 (399)
T 1c7n_A 86 DIQTDWIINTAGVVPAVFNAVREFT-----------KPGDGVIIITPVYYPFFMAIKNQERKIIE----CELLEKDGYYT 150 (399)
T ss_dssp CCCGGGEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSSCCTHHHHHHHTTTCEEEE----CCCEEETTEEE
T ss_pred CCChhhEEEcCCHHHHHHHHHHHhc-----------CCCCEEEEcCCCcHhHHHHHHHcCCEEEe----cccccCCCCEE
Confidence 6789999999999999999764 15789999999999988665443322111 1111 000111
Q ss_pred eCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc-----c
Q 012368 231 EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH-----Y 304 (465)
Q Consensus 231 ~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~-----~ 304 (465)
.|+++|+++++..++++|++...++++|. .++++++++|+++|++||++||+||+|++|++.|.. ..... .
T Consensus 151 --~d~~~l~~~l~~~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (399)
T 1c7n_A 151 --IDFQKLEKLSKDKNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA 227 (399)
T ss_dssp --CCHHHHHHHHTCTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred --EcHHHHHHHhccCCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence 38999999997445666665444444555 468899999999999999999999999998766632 12221 2
Q ss_pred CCcccEEEecccCC-CccceeeEEeC-HHHHhhccCCCCcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012368 305 GIFPDIMTLAKPLA-GGLPIGAALVT-EKVASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 305 ~~~pdi~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
+....+.++||.++ +|+|+||++++ +++++.+.......++ +.|+++++++.++|+.. +++.+++++.....++.
T Consensus 228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~ 305 (399)
T 1c7n_A 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCIKVIDKNQRI 305 (399)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHH
Confidence 33445668999999 69999999997 6788877643333334 57899999999998753 34455555555555555
Q ss_pred HHHHHHc-CCCceeeeccceE-EEEEec---CChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHH
Q 012368 382 LKQKLAR-NPHVKDVRGLGLI-IGIEFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 382 l~~~~~~-~~~~~~~~~~g~~-~~i~~~---~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l 450 (465)
+.+.+.+ +|.+...++.|.+ +++.++ .+..++.+.|+ ++||.+.++. ..+++|++++.. ++++++++
T Consensus 306 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~~l 383 (399)
T 1c7n_A 306 VKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAP--SSVIQESL 383 (399)
T ss_dssp HHHHHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSC--HHHHHHHH
T ss_pred HHHHHHhhCCCCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccC--HHHHHHHH
Confidence 5555554 5544444555554 467874 35778999998 6899998753 136899988754 78999999
Q ss_pred HHHHHHHHHhhhc
Q 012368 451 EILCKTLPVLDSN 463 (465)
Q Consensus 451 ~~l~~~l~~~~~~ 463 (465)
++|.+++++++++
T Consensus 384 ~~l~~~l~~~~~~ 396 (399)
T 1c7n_A 384 ERLNKALKDLKNR 396 (399)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=292.88 Aligned_cols=349 Identities=11% Similarity=0.030 Sum_probs=249.1
Q ss_pred eEEEeeeccEEEeCCCCEE-----EecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--
Q 012368 82 VVLASGKGCKLYDAEGREY-----LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-- 154 (465)
Q Consensus 82 ~~~~~~~G~~~~d~dG~~y-----lD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-- 154 (465)
++..+++|+++||.+|++| +||..+.. ..+.||+|++++.+++.+..+.+..+..+.+.++++++++.++
T Consensus 11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~ 87 (391)
T 4dq6_A 11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADM---DFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK 87 (391)
T ss_dssp CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSC---SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCceeeeecccccCCCCceeccccCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 3445789999999987655 99988743 3347899999999998764333333445668899999988876
Q ss_pred --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEe
Q 012368 155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFV 230 (465)
Q Consensus 155 --~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 230 (465)
.++|++++||++|+..+++.+. .++++|++.+|+||++...+...+...... +.. .+..+.
T Consensus 88 ~~~~~v~~~~g~~~a~~~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~ 152 (391)
T 4dq6_A 88 IKSEWLIYSPGVIPAISLLINELT-----------KANDKIMIQEPVYSPFNSVVKNNNRELIIS----PLQKLENGNYI 152 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS-----------CTTCEEEECSSCCTHHHHHHHHTTCEEEEC----CCEECTTSCEE
T ss_pred CcHHHeEEcCChHHHHHHHHHHhC-----------CCCCEEEEcCCCCHHHHHHHHHcCCeEEee----eeeecCCCceE
Confidence 6789999999999999999774 158899999999999876655443322211 111 000000
Q ss_pred eCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc-----c
Q 012368 231 EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH-----Y 304 (465)
Q Consensus 231 ~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~-----~ 304 (465)
-|+++|++++++ +++|+++..++++|. .++.+.+++|+++|++||++||+||+|++|.+.|.. ..... .
T Consensus 153 --~d~~~l~~~l~~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (391)
T 4dq6_A 153 --MDYEDIENKIKD--VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFE 227 (391)
T ss_dssp --CCHHHHHHHCTT--EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred --eeHHHHHHHhhc--CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcccc
Confidence 289999999976 555555544555565 457888999999999999999999999998776642 11211 1
Q ss_pred CCcccEEEecccCC-CccceeeEEeCH-HHHhhccCC-CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012368 305 GIFPDIMTLAKPLA-GGLPIGAALVTE-KVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 305 ~~~pdi~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
+....+.++||.++ +|+|+|++++++ ++++.+... ....+++.|+++++++.++|+.. +++.++.++.....++.
T Consensus 228 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~ 305 (391)
T 4dq6_A 228 KNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG--ESWLESFLEYLESNIDF 305 (391)
T ss_dssp HTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHH
Confidence 22344668999998 689999999875 888877643 23345678999999999999853 33444455554555555
Q ss_pred HHHHHHc-CCCceeeeccceE-EEEEec---CChHHHHHHHHHC-CceEeecC-----CCCEEEEecCCCCcHHHHHHHH
Q 012368 382 LKQKLAR-NPHVKDVRGLGLI-IGIEFD---VSATPVVDACRDS-GLLVLTAG-----KGNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 382 l~~~~~~-~~~~~~~~~~g~~-~~i~~~---~~~~~~~~~l~~~-Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l 450 (465)
+.+.+.+ +|.+...++.+.+ .++.++ .+..++.+.|+++ ||.+.++. ..+++|++++ ++++++++++
T Consensus 306 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l 383 (391)
T 4dq6_A 306 AIKYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEAL 383 (391)
T ss_dssp HHHHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHH
T ss_pred HHHHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHH
Confidence 5554444 4544445555554 457774 3678899999998 99998752 1378999877 6899999999
Q ss_pred HHHHHHH
Q 012368 451 EILCKTL 457 (465)
Q Consensus 451 ~~l~~~l 457 (465)
++|++++
T Consensus 384 ~~l~~~l 390 (391)
T 4dq6_A 384 IRIKNAI 390 (391)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999876
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=296.09 Aligned_cols=335 Identities=18% Similarity=0.143 Sum_probs=251.6
Q ss_pred eeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccc-----cCCCCCHHHHHHHHHHHhhcCCCeEE
Q 012368 86 SGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHV-----SNMYYSIPQIELAKRLVACSFADRVF 159 (465)
Q Consensus 86 ~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~-----~~~~~~~~~~~la~~l~~~~~~~~v~ 159 (465)
++.+.+++|.+|++||||+++.+ +|+ +||+|++++.+++++.... ...+..+...+++++++++++.+..+
T Consensus 47 ~~~~~~~~~~~g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i 123 (409)
T 3kki_A 47 NGKHLVLGKQASPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECL 123 (409)
T ss_dssp TSSCTTCCCCCCTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEE
T ss_pred CCCeeeeCCCCCCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEE
Confidence 57788899999999999999754 565 7899999999999874221 11122344678999999999977788
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHH
Q 012368 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239 (465)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 239 (465)
++++|++|+..+++++. + +++.|++.+++|...... ....+ ..+..++.+|+++|+
T Consensus 124 ~~~sGt~a~~~~l~~~~---~--------~gd~Vl~~~~~~~~~~~~-~~~~g------------~~~~~~~~~d~~~le 179 (409)
T 3kki_A 124 LSQSGWNANVGLLQTIC---Q--------PNTNVYIDFFAHMSLWEG-ARYAN------------AQAHPFMHNNCDHLR 179 (409)
T ss_dssp EESCHHHHHHHHHHHHC---C--------TTCEEEEETTSCHHHHHH-HHHTT------------CEEEEECTTCHHHHH
T ss_pred EecchHHHHHHHHHHhc---C--------CCCEEEECCCcCHHHHHH-HHHcC------------CeEEEecCCCHHHHH
Confidence 88999999999998654 2 688888888877554432 22221 122344557999999
Q ss_pred hhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCccccccccCC--cccE--EEe
Q 012368 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGI--FPDI--MTL 313 (465)
Q Consensus 240 ~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~gr~g~~~~~~~~~~--~pdi--~t~ 313 (465)
++++.+++++|+++++++++|.+.+ +++|+++|++||++||+||+|++ +|++|..+. ..+++ .+|+ .++
T Consensus 180 ~~l~~~~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~ 254 (409)
T 3kki_A 180 MLIQRHGPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASL 254 (409)
T ss_dssp HHHHHHCSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEES
T ss_pred HHHHhcCCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeec
Confidence 9997444689999999888888765 99999999999999999999998 777666443 44455 4566 578
Q ss_pred cccCCCccceeeEEeCHHHHhhccCCCCc--CCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCC
Q 012368 314 AKPLAGGLPIGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 314 sK~lg~G~~iG~v~~~~~i~~~~~~~~~~--~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
||++++| .|++++++++++.+...... .+.+.+++.++++.++++.+++ +++.++++++.+++++.|+++ .+.
T Consensus 255 sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 330 (409)
T 3kki_A 255 AKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL--GLT 330 (409)
T ss_dssp SSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--TCC
T ss_pred chhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCc
Confidence 9999876 59999999988877542221 1223678899999999987744 466777777777777777654 222
Q ss_pred CceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 391 HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 391 ~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+.+.+.++++.+.. ...++.+.|+++||++.+... .+++||+++..+|++++++++++|+++++..
T Consensus 331 ----~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 331 ----IRSESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp ----CCCSSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ----cCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 23578888888742 356789999999999875321 3689999999999999999999999998754
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=288.76 Aligned_cols=338 Identities=13% Similarity=0.106 Sum_probs=239.4
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-----cccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-----HVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANE 169 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~ 169 (465)
..+|||.++.+.. .+++++.+.+++.+++++.. +....+..+.++++++++.+.++ .++|++|+||++|+.
T Consensus 76 ~~~i~l~~g~p~~-~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~ 154 (448)
T 3aow_A 76 SDIISLAGGLPNP-KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALD 154 (448)
T ss_dssp SSSEECCCCCCCG-GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHH
T ss_pred CCcEeCCCCCCCc-hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHH
Confidence 4589999988654 35788999999999887531 11111122334555555544335 479999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----CCHHHHHhhcC--
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQ-- 243 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~-- 243 (465)
.+++++. ++++.|++.+|+|+++...+...+.. +..+|. .|+++|+++++
T Consensus 155 ~~~~~l~-----------~~Gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~g~d~~~L~~~l~~~ 210 (448)
T 3aow_A 155 LIGRVFL-----------NPGDIVVVEAPTYLAALQAFNFYEPQ-------------YIQIPLDDEGMKVEILEEKLKEL 210 (448)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTTCCE-------------EEEEEEETTEECHHHHHHHHHHH
T ss_pred HHHHHHc-----------CCCCEEEEeCCChHHHHHHHHHcCCE-------------EEEeccCCCCCCHHHHHHHHhhh
Confidence 9999764 26899999999999987655433221 112222 28999999886
Q ss_pred --C-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc----ccccccCCcccEEEeccc
Q 012368 244 --P-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 244 --~-~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~----~~~~~~~~~pdi~t~sK~ 316 (465)
+ .++++|++.|+.+|++...++.+++++|.++|++||++||+||+|+++.+.|.. ..++..+..+++.+|||.
T Consensus 211 ~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~ 290 (448)
T 3aow_A 211 KSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI 290 (448)
T ss_dssp HHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred hccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhh
Confidence 4 367887666654443234568999999999999999999999999988665542 223333456778899999
Q ss_pred CCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CC-Ccee
Q 012368 317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NP-HVKD 394 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~~ 394 (465)
++.|+|+||+++++++++.+.......+++.|+++++++.++|+....+++.+++++.....++.+.+.+.+ .| .+..
T Consensus 291 ~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~ 370 (448)
T 3aow_A 291 LAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKW 370 (448)
T ss_dssp TCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 998999999999999998886544455677899999999999874311334444444443444444444433 34 2333
Q ss_pred e-eccceEEEEEec--CChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 395 V-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 395 ~-~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+ +..|+++|+.++ .+..++++.|+++||.+.++. ..+++|++++. .++++|++++++|.+++++..
T Consensus 371 ~~p~~g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 371 TKPEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp CCCSBSSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHH
T ss_pred eCCCccEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 3 345788888884 357789999999999998852 13789999876 489999999999999998764
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=281.29 Aligned_cols=344 Identities=19% Similarity=0.151 Sum_probs=251.3
Q ss_pred cccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCC-CCCHHHHHHHHHHHhhcccc--cCC---CCCHHHHHHH
Q 012368 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHV--SNM---YYSIPQIELA 146 (465)
Q Consensus 73 ~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~a~~~~~~~~~~~--~~~---~~~~~~~~la 146 (465)
....+.+.|.++.+++|+++| .+|++||||.++.+ +| +.+|++++++.++++..... ... ...+...+++
T Consensus 15 ~~~~~~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 90 (384)
T 1bs0_A 15 RAADALRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALE 90 (384)
T ss_dssp CGGGCCCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHH
T ss_pred HhcCCccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHH
Confidence 333455778889999999999 79999999999743 67 58999999999998763221 111 2346688999
Q ss_pred HHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC
Q 012368 147 KRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG 226 (465)
Q Consensus 147 ~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 226 (465)
++|+++++.++++++++|++|+..+++.+. + +++.|++.+|+|. .........+ ..
T Consensus 91 ~~la~~~g~~~~i~~~sGt~a~~~~~~~~~---~--------~gd~v~~~~~~~~-~~~~~~~~~g------------~~ 146 (384)
T 1bs0_A 91 EELAEWLGYSRALLFISGFAANQAVIAAMM---A--------KEDRIAADRLSHA-SLLEAASLSP------------SQ 146 (384)
T ss_dssp HHHHHHHTCSEEEEESCHHHHHHHHHHHHC---C--------TTCEEEEETTCCH-HHHHHHHTSS------------SE
T ss_pred HHHHHHhCCCcEEEeCCcHHHHHHHHHHhC---C--------CCcEEEEcccccH-HHHHHHHHcC------------CC
Confidence 999999997788888889999999988653 1 5777777777654 4333332221 22
Q ss_pred ceEeeCCCHHHHHhhcCCC--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC--CCCCcccccc
Q 012368 227 VNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHE 302 (465)
Q Consensus 227 ~~~~~~~d~~~le~~l~~~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--gr~g~~~~~~ 302 (465)
+..+|..|+++|++++++. .+++|++++.++++|.+.+ +++|.++|++||++||+||+|..+ ++.|..+ ..
T Consensus 147 ~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~ 221 (384)
T 1bs0_A 147 LRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CW 221 (384)
T ss_dssp EEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HH
T ss_pred EEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-HH
Confidence 3456667999999998642 3678888877777777765 899999999999999999999632 3334432 24
Q ss_pred ccCCcccEE--EecccCCCccceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHH
Q 012368 303 HYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKG 375 (465)
Q Consensus 303 ~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~ 375 (465)
.++..+|++ ++||+++. +.|++++++++++.+... .+..+.+.+++.++++.++|+.+.+ ++..++++++.
T Consensus 222 ~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~ 299 (384)
T 1bs0_A 222 LQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALI 299 (384)
T ss_dssp HTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 455668888 89999974 449999999998877542 1233446899999999999987653 34555666666
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHH
Q 012368 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~ 447 (465)
+++.+.|++ .+. ....+.|.++++.++ .+..++.+.|.++||.+.++.. .+++|++++..+++++++
T Consensus 300 ~~l~~~L~~----~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~ 374 (384)
T 1bs0_A 300 TRFRAGVQD----LPF-TLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDID 374 (384)
T ss_dssp HHHHHHHTT----SSC-EECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHH
T ss_pred HHHHHHHHh----cCC-cccCCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHH
Confidence 666655544 332 222356778778774 2456799999999999987632 268999999888999999
Q ss_pred HHHHHHHHH
Q 012368 448 QAVEILCKT 456 (465)
Q Consensus 448 ~~l~~l~~~ 456 (465)
+++++|+++
T Consensus 375 ~~~~~l~~~ 383 (384)
T 1bs0_A 375 RLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=285.81 Aligned_cols=336 Identities=15% Similarity=0.113 Sum_probs=240.1
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC----CCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM----YYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~----~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
|+++|||.++.+. ..||++|.+.+++.+++++......+ ...+.++++++++.+.++ .++|++|+||++|+
T Consensus 33 g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~ 111 (407)
T 2zc0_A 33 GVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL 111 (407)
T ss_dssp SCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred CCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence 7789999988764 34788999999999998763211111 112335555555544335 67899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----CCHHHHHhhcC-
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQ- 243 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~- 243 (465)
..+++.+.. ++++|++.+|+||++...+...+.. +..+|. .|+++|+++++
T Consensus 112 ~~~~~~~~~-----------~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~d~~~l~~~l~~ 167 (407)
T 2zc0_A 112 DLLGRVLID-----------PGDVVITENPSYINTLLAFEQLGAK-------------IEGVPVDNDGMRVDLLEEKIKE 167 (407)
T ss_dssp HHHHHHHCC-----------TTCEEEEEESCCHHHHHHHHTTTCE-------------EEEEEEETTEECHHHHHHHHHH
T ss_pred HHHHHHhcC-----------CCCEEEEeCCChHHHHHHHHHcCCE-------------EEEcccCCCCCCHHHHHHHHHh
Confidence 999997741 5789999999999986544332211 112221 28999999886
Q ss_pred ---C-CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccccc---CCcccEEEec
Q 012368 244 ---P-GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY---GIFPDIMTLA 314 (465)
Q Consensus 244 ---~-~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~---~~~pdi~t~s 314 (465)
+ .++++|++.+. ++++|. .++.+++++|.++|++||++||+||+|+++.+.|.. .....+ +...++.++|
T Consensus 168 ~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 246 (407)
T 2zc0_A 168 LKAKGQKVKLIYTIPTGQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS 246 (407)
T ss_dssp HHHTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred hhcccCCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence 4 35777755544 444555 468899999999999999999999999988665542 222222 3345677899
Q ss_pred ccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHh--c---CchHHHHHHHHHHHHHHHHHHHHHcC
Q 012368 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI--S---NPAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~--~---~~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
|.+++|+|+|++++++++++.+.......+++.+++++.++.++|+.. . -+...++++++.+++.+.|++. .
T Consensus 247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~ 323 (407)
T 2zc0_A 247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH---L 323 (407)
T ss_dssp TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH---C
T ss_pred cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh---C
Confidence 999989999999999999888865445566778999999999998754 1 1334555566666666666543 2
Q ss_pred CCcee-eeccceEEEEEec--CChHHHHHHHHHC-CceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 390 PHVKD-VRGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 390 ~~~~~-~~~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+.+.. .+..|.++++.++ .+..++.+.|.++ ||.+.++. ..+++|++++.. +++++++++++|+++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~ 402 (407)
T 2zc0_A 324 PNAEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYK 402 (407)
T ss_dssp TTSCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHH
T ss_pred CCCEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence 22222 2345778888884 3577899999998 99998752 137899998876 89999999999999998
Q ss_pred Hhhh
Q 012368 459 VLDS 462 (465)
Q Consensus 459 ~~~~ 462 (465)
++.+
T Consensus 403 ~~~~ 406 (407)
T 2zc0_A 403 EKFG 406 (407)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 7643
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=292.82 Aligned_cols=355 Identities=13% Similarity=0.071 Sum_probs=246.5
Q ss_pred EEEeeeccEEEeCCCC---EEEecccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcCC-
Q 012368 83 VLASGKGCKLYDAEGR---EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSFA- 155 (465)
Q Consensus 83 ~~~~~~G~~~~d~dG~---~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~~- 155 (465)
++.+++|.++++.+++ ++|||.+|.+. +++ .+|.|++|+.+++.+.. +....+..+.++++++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~ 98 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP 98 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4567788777765555 59999987653 444 78999999999987532 212223445688899999888773
Q ss_pred ----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCC--C-CCCce
Q 012368 156 ----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP--V-MPGVN 228 (465)
Q Consensus 156 ----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~--~-~~~~~ 228 (465)
++|++|+||++|+..+++.+. .++++|++.+|+|+++...+...+...... +..+ . ..+..
T Consensus 99 ~~~~~~i~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 166 (407)
T 3nra_A 99 VDARDGLIITPGTQGALFLAVAATV-----------ARGDKVAIVQPDYFANRKLVEFFEGEMVPV-QLDYVSADETRAG 166 (407)
T ss_dssp CCTTTSEEEESHHHHHHHHHHHTTC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEEEE-EBCCCSSCCSSCC
T ss_pred CCCCCcEEEeCCcHHHHHHHHHHhC-----------CCCCEEEEcCCcccchHHHHHHcCCEEEEe-ecccccccCcCCC
Confidence 799999999999999998653 168899999999998775554433221110 0000 0 00000
Q ss_pred EeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccc----
Q 012368 229 FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH---- 303 (465)
Q Consensus 229 ~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~---- 303 (465)
.|+++|+++++++..+++++.|. +++|. .++.+++++|+++|++||++||+||+|+++++.|..+ ....
T Consensus 167 ----~d~~~l~~~l~~~~~~v~~~~p~-nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~ 240 (407)
T 3nra_A 167 ----LDLTGLEEAFKAGARVFLFSNPN-NPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV 240 (407)
T ss_dssp ----BCHHHHHHHHHTTCCEEEEESSC-TTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS
T ss_pred ----cCHHHHHHHHhhCCcEEEEcCCC-CCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc
Confidence 28999999997644455566664 44454 4588999999999999999999999999887666432 2222
Q ss_pred -cCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012368 304 -YGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 304 -~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
.+..+++.++||.++ +|+|+||+++++++++.+.......+++.++++++++.++|+. .+++.++..+....+++.
T Consensus 241 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~ 318 (407)
T 3nra_A 241 DAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDE 318 (407)
T ss_dssp CGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHHH
Confidence 233455668999999 6899999999999998886555556677888888887777752 234445555555555666
Q ss_pred HHHHHHcCCCceeeecc-ceEEEEEec---CChHHHHHHHHH-CCceEeecC-----CCCEEEEecCCCCcHHHHHHHHH
Q 012368 382 LKQKLARNPHVKDVRGL-GLIIGIEFD---VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~~-g~~~~i~~~---~~~~~~~~~l~~-~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
|.+.+.+++.+....+. |.++++.+. .+..++.+.|++ +||++.++. ..+++|++++. ++++|+++++
T Consensus 319 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~ 396 (407)
T 3nra_A 319 LLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAAR 396 (407)
T ss_dssp HHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHH
T ss_pred HHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHH
Confidence 66666666544443333 577777763 356789999976 599998753 14789998874 8999999999
Q ss_pred HHHHHHHHhh
Q 012368 452 ILCKTLPVLD 461 (465)
Q Consensus 452 ~l~~~l~~~~ 461 (465)
+|++++++++
T Consensus 397 ~l~~~~~~~~ 406 (407)
T 3nra_A 397 RIVTLVERYR 406 (407)
T ss_dssp HHHHHHHHHB
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=284.21 Aligned_cols=348 Identities=16% Similarity=0.037 Sum_probs=247.1
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC---
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--- 154 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--- 154 (465)
+.|+....+.+.+++|.+|+++|||.++.. .++ .+|.|++++.+++.....+.. .+..+.++++++++.+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~ 87 (396)
T 3jtx_A 11 PYPFARLHEAMQGISAPEGMEAVPLHIGEP--KHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLT 87 (396)
T ss_dssp SCHHHHHHHHTTTCCCCTTCCCEECSCCSC--CSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCC
T ss_pred CChHHHHHHHHHhhhhccCCCeEEeCCcCC--CCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 344444456777788899999999999875 455 689999999998864333222 1234557788888877654
Q ss_pred --CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-----ceEEEEcCCcccCccccccccCCCCcCCCCCCCC-C
Q 012368 155 --AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-----TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-P 225 (465)
Q Consensus 155 --~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~-----~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~ 225 (465)
.+ +|++|+||++|+..+++.+.. ++ +.|++.+|+||++...+...+...... +.. .
T Consensus 88 ~~~~~~i~~t~g~~~al~~~~~~~~~-----------~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~ 152 (396)
T 3jtx_A 88 VDADNEILPVLGSREALFSFVQTVLN-----------PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFA----NCPAP 152 (396)
T ss_dssp CCTTTSEEEESSHHHHHHHHHHHHCC-----------C---CCCCEEEEEESCCHHHHHHHHHTTCEEEEE----ECCTT
T ss_pred CCCCCeEEEcCCcHHHHHHHHHHHhC-----------CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEe----ecCCC
Confidence 56 999999999999999997752 33 699999999999876554443222111 111 1
Q ss_pred CceEeeCCCHHHHHhhcCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cccccc-
Q 012368 226 GVNFVEYGNIEATRKLIQPGKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-YLWAHE- 302 (465)
Q Consensus 226 ~~~~~~~~d~~~le~~l~~~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g-~~~~~~- 302 (465)
+.. .|+++|++++++ ++++|+ ++|.| ++|. .++.+.+++|.++|++||++||+||+|++|.+.| ......
T Consensus 153 g~~----~d~~~l~~~~~~-~~~~v~l~~p~n-ptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 225 (396)
T 3jtx_A 153 SFN----PDWRSISEEVWK-RTKLVFVCSPNN-PSGS-VLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQ 225 (396)
T ss_dssp TCC----CCGGGSCHHHHH-TEEEEEEESSCT-TTCC-CCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHH
T ss_pred CCc----cCHHHHHHhhcc-CcEEEEEECCCC-CCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHh
Confidence 111 177888888865 455555 45544 4444 4578889999999999999999999999987766 332221
Q ss_pred -------ccCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHH
Q 012368 303 -------HYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKK 374 (465)
Q Consensus 303 -------~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~ 374 (465)
..+..+++.++||.++ +|+|+||+++++++++.+.......+++.++++++++.++|+. ++..++.++.
T Consensus 226 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~ 302 (396)
T 3jtx_A 226 AAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRL 302 (396)
T ss_dssp HHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred hhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHH
Confidence 1456677889999987 4899999999999998886544556778899999999999873 4455555555
Q ss_pred HHHHHHHHHHHHHcCCCceeeeccceEEEEEec-CChHHHHHHHHH-CCceEeecC-----------CCCEEEEecCCCC
Q 012368 375 GHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-VSATPVVDACRD-SGLLVLTAG-----------KGNVVRLVPPLII 441 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~-~Gv~v~~~~-----------~~~~lRi~~~~~~ 441 (465)
....++.+.+.+.++..+ ..+..|.++++.++ .+..++++.|++ +||.+.++. ..+++||+++.
T Consensus 303 ~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-- 379 (396)
T 3jtx_A 303 YQEKFERVIPILQQVFDV-KLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-- 379 (396)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--
T ss_pred HHHHHHHHHHHHHhcCCc-cCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--
Confidence 555555555555543211 22344778888885 367788998864 699998752 13789998764
Q ss_pred cHHHHHHHHHHHHHHH
Q 012368 442 SEQELDQAVEILCKTL 457 (465)
Q Consensus 442 t~e~i~~~l~~l~~~l 457 (465)
+++++++++++|++++
T Consensus 380 ~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 380 DVATCVKAAEDIVSLY 395 (396)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=277.01 Aligned_cols=329 Identities=14% Similarity=0.085 Sum_probs=240.0
Q ss_pred eeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCH
Q 012368 87 GKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTG 164 (465)
Q Consensus 87 ~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG 164 (465)
.+|.++++.+|+++|||.++.. +++ .+|+|++++.+++... ..|+.....+++++++++++ .++|++++||
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~ 77 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNEN--PLG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS 77 (354)
T ss_dssp ----CCCCCCSSSCEECSSCCC--SSC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred cccccccCCCCCceEEccCCCC--CCC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence 4567788899999999999864 555 7899999999988752 33455667899999999988 6899999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHH
Q 012368 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATR 239 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le 239 (465)
++|+..+++.+. .++++|++.+|+|+++...+...+.. +..+|.+ |+++|+
T Consensus 78 ~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~d~~~l~ 133 (354)
T 3ly1_A 78 SEGIRAAIEAYA-----------SLEAQLVIPELTYGDGEHFAKIAGMK-------------VTKVKMLDNWAFDIEGLK 133 (354)
T ss_dssp HHHHHHHHHHHC-----------CTTCEEEEESSSCTHHHHHHHHTTCE-------------EEEECCCTTSCCCHHHHH
T ss_pred HHHHHHHHHHHh-----------CCCCeEEECCCCchHHHHHHHHcCCE-------------EEEecCCCCCCCCHHHHH
Confidence 999999999764 16889999999999887554443322 1222222 899999
Q ss_pred hhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-c---cccc-CCcccEEEe
Q 012368 240 KLIQP-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A---HEHY-GIFPDIMTL 313 (465)
Q Consensus 240 ~~l~~-~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~---~~~~-~~~pdi~t~ 313 (465)
++++. .++++|+++..++++|.+ .+.+.+++|+++| +||+++|+||+|.++.+.+... . .... +....+.++
T Consensus 134 ~~l~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 211 (354)
T 3ly1_A 134 AAVAAYSGPSIVYLVNPNNPTGTI-TPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTF 211 (354)
T ss_dssp HHHHTCSSCEEEEEESSCTTTCCC-CCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEES
T ss_pred HHhccCCCCCEEEEeCCCCCcCCC-cCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeC
Confidence 99972 355666554444445544 4777888888888 7999999999999886665321 1 1222 444556689
Q ss_pred cccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012368 314 AKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 314 sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
||.++ +|+|+|++++++++++.+..... .++.|+++++++.++|+... -++..++++++.+++.+.|++. +
T Consensus 212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~- 284 (354)
T 3ly1_A 212 SKIHAMAGMRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----K- 284 (354)
T ss_dssp SSTTCCGGGCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T-
T ss_pred hhhccChhhhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-
Confidence 99998 69999999999999998875432 37889999999998887321 1223344444555555555443 3
Q ss_pred ceeeeccceEEEEEecCChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 392 VKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+...++.|.++++.++.+..++.+.|.++||.+. +. ..+++|++++ +++++++++++|++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 285 LPYLPSEGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CCBCCCCSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred CeECCCCceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 2334567889888886577889999999999987 32 2478999854 789999999999998864
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=275.14 Aligned_cols=338 Identities=14% Similarity=0.118 Sum_probs=235.5
Q ss_pred ceEEEeeeccEEEe-CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCe
Q 012368 81 PVVLASGKGCKLYD-AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADR 157 (465)
Q Consensus 81 p~~~~~~~G~~~~d-~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~ 157 (465)
++++.+|.+.+.++ .+|+++|||.++.. +++ .+|.|++++.++++.... +++....+++++++++++ .++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~ 80 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNIN--PLG-IPKSFLNNIDEGIKNLGV----YPDVNYRRLNKSIENYLKLKDIG 80 (361)
T ss_dssp --------------------CEETTCCCC--TTC-SCHHHHTTHHHHHHGGGS----CCCTTCHHHHHHHHHHHTCCSCE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCCC--CCC-CCHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHhCCCcce
Confidence 34555555544444 48999999999865 455 689999999999876422 344446788888988887 689
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHH
Q 012368 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 237 (465)
|++|+||++|+..+++.+ ++|++.+|+||++...+...+...... +...+.. -++++
T Consensus 81 i~~~~g~t~al~~~~~~~---------------d~vi~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~----~~~~~ 137 (361)
T 3ftb_A 81 IVLGNGASEIIELSISLF---------------EKILIIVPSYAEYEINAKKHGVSVVFS----YLDENMC----IDYED 137 (361)
T ss_dssp EEEESSHHHHHHHHHTTC---------------SEEEEEESCCTHHHHHHHHTTCEEEEE----ECCTTSC----CCHHH
T ss_pred EEEcCCHHHHHHHHHHHc---------------CcEEEecCChHHHHHHHHHcCCeEEEe----ecCcccC----CCHHH
Confidence 999999999999988844 479999999999876554443222111 1111111 26799
Q ss_pred HHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCc---ccEEEec
Q 012368 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF---PDIMTLA 314 (465)
Q Consensus 238 le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~---pdi~t~s 314 (465)
+++++++ ..++++++|.|++ |. .++.+.+++|+++|++||+++|+||+|+++.+.+........+.. ..+.++|
T Consensus 138 l~~~l~~-~~~v~i~~p~npt-G~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 214 (361)
T 3ftb_A 138 IISKIDD-VDSVIIGNPNNPN-GG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMT 214 (361)
T ss_dssp HHHHTTT-CSEEEEETTBTTT-TB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESS
T ss_pred HHHhccC-CCEEEEeCCCCCC-CC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeCh
Confidence 9999986 4555566665554 44 458888999999999999999999999988654211222222222 2344789
Q ss_pred ccCC-CccceeeEE-eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 315 KPLA-GGLPIGAAL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 315 K~lg-~G~~iG~v~-~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
|.++ +|+|+|+++ +++++++.+... ..+++.|+++++++.++|+ +.+..++.++.....++.+.+.+.++|.+
T Consensus 215 K~~~~~G~r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 289 (361)
T 3ftb_A 215 KFFAMPGIRFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLK---DTNYIEESLLWIKKERKRFIEELNKIGFI 289 (361)
T ss_dssp STTSCGGGCCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHHHHHHHHSSSE
T ss_pred hhcCCCCcceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9998 689999998 899999988743 3467889999999988887 34556666666666667776666677766
Q ss_pred e-eeeccceEEEEEecC-ChHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 393 K-DVRGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 393 ~-~~~~~g~~~~i~~~~-~~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
. ..++.|.++++.++. +..++.+.|.++||.+.++.. ++++|++++ +.++++++++.|+++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 290 KRVFSPHANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp EEEECCSSSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred ceecCCCCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 6 677889999988853 678899999999999988531 478999865 788888888888877653
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=285.77 Aligned_cols=337 Identities=14% Similarity=0.097 Sum_probs=236.0
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
++++|||.++.+. ..||++|.+.+++.+++++.......|.. ....++++.++++++ .++|++++||++|+..+++
T Consensus 31 ~~~~i~l~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~ 109 (397)
T 2zyj_A 31 RPGILSFAGGLPA-PELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK 109 (397)
T ss_dssp STTCEEESSCCCC-GGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCceecCCCCCC-chhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence 4568999888754 35788999999999988753211112222 235677777777776 5799999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----CCHHHHHhhcCCCCeEE
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQPGKTAA 249 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~a~ 249 (465)
++. .++++|++.+|+||++...+...+.. +..+|. .|+++|++++++.++++
T Consensus 110 ~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~d~~~l~~~l~~~~~~~ 165 (397)
T 2zyj_A 110 VFL-----------DEGSPVLLEAPSYMGAIQAFRLQGPR-------------FLTVPAGEEGPDLDALEEVLKRERPRF 165 (397)
T ss_dssp HHC-----------CTTCEEEEEESCCHHHHHHHHTTCCE-------------EEEEEEETTEECHHHHHHHHHHCCCSC
T ss_pred HhC-----------CCCCEEEEeCCCcHHHHHHHHHcCCE-------------EEecCcCCCCCCHHHHHHHHhhcCCeE
Confidence 764 15789999999999987654433221 111221 28999999986434566
Q ss_pred EEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccccc------CCcccEEEecccCCCcc
Q 012368 250 VFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY------GIFPDIMTLAKPLAGGL 321 (465)
Q Consensus 250 vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~------~~~pdi~t~sK~lg~G~ 321 (465)
|++.+ .++++|. .++.+++++|.++|++||++||+||+|+++.+.|.. .....+ +....+.++||++++|+
T Consensus 166 v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~ 244 (397)
T 2zyj_A 166 LYLIPSFQNPTGG-LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL 244 (397)
T ss_dssp EEECCBSCTTTCC-BCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG
T ss_pred EEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc
Confidence 54333 3333454 468899999999999999999999999998766642 222222 23344668999999889
Q ss_pred ceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CC-Ccee-eecc
Q 012368 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NP-HVKD-VRGL 398 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~~-~~~~ 398 (465)
|+||+++++++++.+.......+++.|+++++++.++|+.... +..++.++.....++.+.+.+.+ .| .+.. .+..
T Consensus 245 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~ 323 (397)
T 2zyj_A 245 RVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG 323 (397)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB
T ss_pred eeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc
Confidence 9999999999988876544445567799999998888874211 23333333333333444443333 33 2333 2355
Q ss_pred ceEEEEEec--CChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 399 GLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 399 g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|.+++++++ .+..++.+.|.++||.+.++. ..+++||+++.. +++++++++++|+++++++.
T Consensus 324 g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 324 GMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 788888884 357789999999999998752 237899998875 89999999999999998764
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=287.12 Aligned_cols=344 Identities=12% Similarity=0.103 Sum_probs=239.6
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc----cc-cCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT----HV-SNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTE 166 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~----~~-~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~e 166 (465)
++++|||.++.+.. .||++|.+.+++.++++... .+ ...+..+.++++++++.+.++ .++|++|+||++
T Consensus 42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 45789999987643 58899999999999887521 11 111223345666666655434 468999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-- 244 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-- 244 (465)
|+..+++++. + ++++|++.+|+||++...+...+.... . .+...+ . .|+++|++++++
T Consensus 121 al~~~~~~l~---~--------~gd~Vl~~~p~y~~~~~~~~~~g~~~~-~---v~~~~~-~----~d~~~l~~~l~~~~ 180 (425)
T 1vp4_A 121 ALDLIGKLFL---D--------DESYCVLDDPAYLGAINAFRQYLANFV-V---VPLEDD-G----MDLNVLERKLSEFD 180 (425)
T ss_dssp HHHHHHHHHC---C--------TTCEEEEEESCCHHHHHHHHTTTCEEE-E---EEEETT-E----ECHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---C--------CCCEEEEeCCCcHHHHHHHHHcCCEEE-E---eccCCC-C----CCHHHHHHHHHhhh
Confidence 9999999664 1 578999999999998765544332111 0 011111 0 289999998864
Q ss_pred -----CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc---cCCcccEEEec
Q 012368 245 -----GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH---YGIFPDIMTLA 314 (465)
Q Consensus 245 -----~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~---~~~~pdi~t~s 314 (465)
.++++|++.|+ ++++|. .++.+++++|.++|++||++||+||+|++|.+.|.. ..... .+....+.++|
T Consensus 181 ~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~s 259 (425)
T 1vp4_A 181 KNGKIKQVKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFS 259 (425)
T ss_dssp HTTCGGGEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEEST
T ss_pred hcccCCCceEEEECCCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccc
Confidence 25777754443 333344 468899999999999999999999999998665542 22222 23334466899
Q ss_pred ccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHcCC
Q 012368 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN----PAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
|++++|+|+||+++++++++.+.......+++.|+++++++.++|+.... +...++++++.+++.+.|++.+..++
T Consensus 260 K~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 339 (425)
T 1vp4_A 260 KVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIP 339 (425)
T ss_dssp TTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred cccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99998899999999999988876544445567799999999999986421 23344455555666666555322111
Q ss_pred Cceee-eccceEEEEEec--CChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 391 HVKDV-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 391 ~~~~~-~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+..+ +..|.++++.++ .+..++.+.|.++||.+.++. ..+++||+++.. +++++++++++|+++++++
T Consensus 340 g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 340 GVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp TCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 23332 455778888884 246678999999999998752 137899998864 8999999999999999887
Q ss_pred hhc
Q 012368 461 DSN 463 (465)
Q Consensus 461 ~~~ 463 (465)
.++
T Consensus 419 ~~~ 421 (425)
T 1vp4_A 419 GKE 421 (425)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=277.01 Aligned_cols=328 Identities=14% Similarity=0.101 Sum_probs=242.7
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC---CeEEecCCHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~v~~~~sG~eA~~~al~ 173 (465)
.+.+|||.++. ++++ .+|+|++++.+++..... ..|+.....+++++++++++. ++|++|+||++|+..+++
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVAL--NRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHT--TCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhh--hcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 36789999886 3555 789999999998875311 234444577899999998874 799999999999999998
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.+. .++++|++.+|+|+++...+...+...... +...+. ..|+++|+++++++++++|+++
T Consensus 104 ~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v----~~~~~~----~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 104 AAA-----------RPGAKVMAPVPGFVMYAMSAQFAGLEFVGV----PLRADF----TLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp HTC-----------CTTCEEEEEESCSCCSCHHHHTTTCEEEEE----ECCTTS----CCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHc-----------CCCCEEEEcCCCHHHHHHHHHHcCCeEEEe----cCCCCC----CCCHHHHHHHhhccCCCEEEEc
Confidence 664 158899999999999876554433221111 111111 1289999999975245566555
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~ 331 (465)
..++.+|.+ ++.+.+++|.++|++| |+++|+||+|++|+..+........+..+++.++||...+|+|+||++++++
T Consensus 165 ~~~nptG~~-~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~ 243 (367)
T 3euc_A 165 YPNNPTGNL-FDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQ 243 (367)
T ss_dssp SSCTTTCCC-CCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHH
T ss_pred CCCCCCCCC-CCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHH
Confidence 444545554 4788899999999999 9999999999988654433344445556777899999335899999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+... ..+++.|+++++++.++|+. .++.++.++....+++.+.+.+.++|.+...++.|.++++.++ +..
T Consensus 244 ~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~-~~~ 317 (367)
T 3euc_A 244 WLEQLDKV--RPPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLARVP-DAA 317 (367)
T ss_dssp HHHHHGGG--CCSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEECS-CHH
T ss_pred HHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEECC-CHH
Confidence 99888743 34677899999999999874 3445555555566666666666666655566777889888886 778
Q ss_pred HHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
++.+.|.++||.+.++.. .+++|++++ +++|+++++++|+++++
T Consensus 318 ~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 318 QTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 899999999999987542 478999855 89999999999988763
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=281.18 Aligned_cols=338 Identities=16% Similarity=0.109 Sum_probs=237.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhc---ccccCC--CCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVL---THVSNM--YYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN 168 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~---~~~~~~--~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~ 168 (465)
.+|||.++.+ .+| .+|.+.+++.+++++. .+.+.. +..+.++++++++.+.++ .+ +|++++||++|+
T Consensus 38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 4789988865 567 6899999999998752 111111 122345666666655444 56 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-----ceEeeC-CCHHHHHhhc
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-----VNFVEY-GNIEATRKLI 242 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~d~~~le~~l 242 (465)
..+++++. .++++|++.+|+||++...+...+..... .+...+ +....+ .|+++|++++
T Consensus 115 ~~~~~~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~d~~~l~~~l 179 (429)
T 1yiz_A 115 YATIQGHV-----------DEGDEVIIIEPFFDCYEPMVKAAGGIPRF----IPLKPNKTGGTISSADWVLDNNELEALF 179 (429)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEE----EECBCCCSSSSEEGGGCBCCHHHHHHHC
T ss_pred HHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHcCCEEEE----EeCCcccccccccccCcccCHHHHHHHh
Confidence 99999764 15789999999999987654433321111 111111 000011 3899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccc----ccCCcccEEEecccC
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHE----HYGIFPDIMTLAKPL 317 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~----~~~~~pdi~t~sK~l 317 (465)
++ ++++|++++.++++|.+ ++++++++|+++|++||++||+||+|++|++.|.. ..+. ..+..+++.++||.+
T Consensus 180 ~~-~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~ 257 (429)
T 1yiz_A 180 NE-KTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF 257 (429)
T ss_dssp CT-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHH
T ss_pred cc-CceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhcc
Confidence 74 57777766666666654 57899999999999999999999999998766541 1121 234556677899999
Q ss_pred C-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-----hcCchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012368 318 A-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 318 g-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
+ +|+|+|++++++++++.+....+..+++.++++++++.++|+. ...+++.+++++..+..++.|.+.+.+++.
T Consensus 258 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 337 (429)
T 1yiz_A 258 SLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGM 337 (429)
T ss_dssp TCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8 6899999999999998886544556888999999999999987 433455555555555555555544444443
Q ss_pred ceeeeccceEEEEEecC--------------ChHHHHHHHH-HCCceEeecC----------CCCEEEEecCCCCcHHHH
Q 012368 392 VKDVRGLGLIIGIEFDV--------------SATPVVDACR-DSGLLVLTAG----------KGNVVRLVPPLIISEQEL 446 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~~--------------~~~~~~~~l~-~~Gv~v~~~~----------~~~~lRi~~~~~~t~e~i 446 (465)
....+..|.+++++++. +..++.+.|+ ++||++.++. .++++||+++ .++++|
T Consensus 338 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i 415 (429)
T 1yiz_A 338 NPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENL 415 (429)
T ss_dssp EEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHH
T ss_pred cccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHH
Confidence 22233347788888842 2457888887 7999998752 0368999887 489999
Q ss_pred HHHHHHHHHHHH
Q 012368 447 DQAVEILCKTLP 458 (465)
Q Consensus 447 ~~~l~~l~~~l~ 458 (465)
++++++|+++++
T Consensus 416 ~~~l~~l~~~l~ 427 (429)
T 1yiz_A 416 QKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcc
Confidence 999999998764
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=278.37 Aligned_cols=344 Identities=13% Similarity=0.104 Sum_probs=239.2
Q ss_pred EeCCCCEEEecccCcccc-cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-------CCeEEecCCH
Q 012368 93 YDAEGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-------ADRVFFSNTG 164 (465)
Q Consensus 93 ~d~dG~~ylD~~~~~~~~-~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-------~~~v~~~~sG 164 (465)
.+.+|+.+|||..+.+.. .-.+.+|.|++|+.+++..... ..+.+.....++++.++++++ .++|++|+||
T Consensus 49 ~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 49 KPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKY-NGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp CCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCS-SSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred cccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcC-CCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 345688999999987532 1124789999999999876321 111122334566666666554 6799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC--CceEeeCCCHHHHHhhc
Q 012368 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLI 242 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l 242 (465)
++|+..+++.+.. ++++|++.+|+|+++...+...+...... +..+ +.. -|+++|++++
T Consensus 128 t~al~~~~~~l~~-----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~~----~d~~~l~~~l 188 (427)
T 3dyd_A 128 SQAIDLCLAVLAN-----------PGQNILVPRPGFSLYKTLAESMGIEVKLY----NLLPEKSWE----IDLKQLEYLI 188 (427)
T ss_dssp HHHHHHHHHHHCC-----------TTCEEEEEESCCTHHHHHHHHTTCEEEEE----EEEGGGTTE----ECHHHHHSSC
T ss_pred HHHHHHHHHHhcC-----------CCCEEEEcCCCchhHHHHHHHcCCEEEEE----ecccccCCC----CCHHHHHHHh
Confidence 9999999997752 68899999999998876554433221110 1000 001 1899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccccCCcccEE---EecccCC
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPDIM---TLAKPLA 318 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~~~~pdi~---t~sK~lg 318 (465)
+++..++++++| ++++|. .++++++++|+++|++||+++|+||+|++|++.|..+ ....++..++++ ++||.++
T Consensus 189 ~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~ 266 (427)
T 3dyd_A 189 DEKTACLIVNNP-SNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWL 266 (427)
T ss_dssp CTTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSS
T ss_pred ccCCCEEEEECC-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCC
Confidence 764444555556 444454 5688999999999999999999999999998777532 344445455555 8999987
Q ss_pred C-ccceeeEEeC-------HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC
Q 012368 319 G-GLPIGAALVT-------EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 319 ~-G~~iG~v~~~-------~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
. |+|+||++++ +++++.+... ...+++.++++++++.++|+... .+..++..+.....++.+.+.+.++|
T Consensus 267 ~~G~riG~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~a~~~~L~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~ 344 (427)
T 3dyd_A 267 VPGWRLGWILIHDRRDIFGNEIRDGLVKL-SQRILGPCTIVQGALKSILCRTP-GEFYHNTLSFLKSNADLCYGALAAIP 344 (427)
T ss_dssp CGGGCCEEEEEECSTTSSHHHHHHHHHHH-HHHHCCSCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CcCcceEEEEecCcchhhHHHHHHHHHHH-HhccCCCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5 8999999987 4677666432 12367889999999999998532 23334444444444455555555555
Q ss_pred Cceee-eccceEEEEEec-------CChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 391 HVKDV-RGLGLIIGIEFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 391 ~~~~~-~~~g~~~~i~~~-------~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.+..+ +..|.++++.++ .+..++++.|+ ++||++.++. .++++|+++. ++++++++++++|.++++
T Consensus 345 g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 422 (427)
T 3dyd_A 345 GLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT--VPEVMMLEACSRIQEFCE 422 (427)
T ss_dssp TEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC--SCHHHHHHHHHHHHHHHH
T ss_pred CceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 55444 445677777774 34678888886 7899999863 2478999864 789999999999999998
Q ss_pred Hhhh
Q 012368 459 VLDS 462 (465)
Q Consensus 459 ~~~~ 462 (465)
++++
T Consensus 423 ~~~~ 426 (427)
T 3dyd_A 423 QHYH 426 (427)
T ss_dssp HHCC
T ss_pred Hhhc
Confidence 8764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=276.09 Aligned_cols=325 Identities=14% Similarity=0.125 Sum_probs=233.2
Q ss_pred eCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHH
Q 012368 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 94 d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~a 171 (465)
+.||+++|||.++.. ++| .+|++++++.++++... .|+.....+++++++++++ .++|++++||++|+..+
T Consensus 20 ~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~ 92 (364)
T 1lc5_A 20 GISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCIE----RYPDADYFHLHQALARHHQVPASWILAGNGETESIFTV 92 (364)
T ss_dssp TSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGGG----SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred CCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHH
Confidence 457889999998864 577 78999999999876532 2233335688888888887 57999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----C-HHHHHhhcCCC
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----N-IEATRKLIQPG 245 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~~~ 245 (465)
++.+ . +++|++.+|+||++...+...+... ..+|.+ + ++++.+.+.++
T Consensus 93 ~~~~----~---------gd~vl~~~p~y~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~l~~~~~~~~~~ 146 (364)
T 1lc5_A 93 ASGL----K---------PRRAMIVTPGFAEYGRALAQSGCEI-------------RRWSLREADGWQLTDAILEALTPD 146 (364)
T ss_dssp HHHH----C---------CSEEEEEESCCTHHHHHHHHTTCEE-------------EEEECCGGGTTCCCTTHHHHCCTT
T ss_pred HHHc----C---------CCeEEEeCCCcHHHHHHHHHcCCeE-------------EEEeCCcccccchhHHHHHhccCC
Confidence 9876 1 4789999999999876554433211 112211 1 34455555433
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cc-ccccCCcccEEEecccCC-Cccc
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WA-HEHYGIFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~-~~~~~~~pdi~t~sK~lg-~G~~ 322 (465)
..++++++|.|++ |. .++.+++++|.++|++||+++|+||+|++|++.+.. .. .+.++....+.++||.++ +|+|
T Consensus 147 ~~~v~i~~p~npt-G~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 224 (364)
T 1lc5_A 147 LDCLFLCTPNNPT-GL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLR 224 (364)
T ss_dssp CCEEEEESSCTTT-CC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTC
T ss_pred CCEEEEeCCCCCC-CC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccc
Confidence 3345556775554 44 458899999999999999999999999987654432 11 122344455668999998 6899
Q ss_pred eeeEE-eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012368 323 IGAAL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 323 iG~v~-~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
+||++ +++++++.+... ..+++.|+++++++.++|+. .++.++.++.....++.+.+.+.++|.+...++.|.+
T Consensus 225 ~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~ 299 (364)
T 1lc5_A 225 LGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANY 299 (364)
T ss_dssp CEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSE
T ss_pred eEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeE
Confidence 99999 999998887642 24678899999998888863 3455666666666666666666666555555677888
Q ss_pred EEEEecCChHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 402 IGIEFDVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 402 ~~i~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+++.++....++.+.|.++||.+.++.. ++++|+++. ++++++++++.|+++++++.
T Consensus 300 ~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 300 LLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp EEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred EEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 8888754445789999999999988631 368999853 68889999999998877653
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=272.35 Aligned_cols=316 Identities=17% Similarity=0.155 Sum_probs=232.8
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
+++|||.++.. +++ .+|+|++++.++++.. ..++.....+++++++++++ .++|++++||++|+..+++.+
T Consensus 32 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~ 104 (363)
T 3ffh_A 32 TKITKLSSNEN--PLG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL 104 (363)
T ss_dssp SCCEECSSCSC--TTC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEccCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH
Confidence 57899998855 565 7899999998876542 23444456788899998887 689999999999999999976
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEE
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAV 250 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~v 250 (465)
. .++++|++.+|+|+++...+...+.. +..+|.+ |++++++++++ ++++|
T Consensus 105 ~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~i~~-~~~~v 159 (363)
T 3ffh_A 105 L-----------DTTTNTVMATPTFVQYRQNALIEGAE-------------VREIPLLQDGEHDLEGMLNAIDE-KTTIV 159 (363)
T ss_dssp C-----------STTCEEEEEESSCHHHHHHHHHHTCE-------------EEEEECCTTSCCCHHHHHHHCCT-TEEEE
T ss_pred c-----------cCCCEEEEcCCChHHHHHHHHHcCCE-------------EEEecCCCCCCcCHHHHHHhccc-CCCEE
Confidence 4 15889999999999877555443322 2223332 89999999975 46666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCccc----EEEecccCC-Cccceee
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD----IMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pd----i~t~sK~lg-~G~~iG~ 325 (465)
+++..++.+|.+ .+.+.+.+|++.|++ |+++|+||+|++|++ +...........+| +.++||.+| +|+|+|+
T Consensus 160 ~~~~p~nptG~~-~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 236 (363)
T 3ffh_A 160 WICNPNNPTGNY-IELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGY 236 (363)
T ss_dssp EEESSCTTTCCC-CCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEE
T ss_pred EEeCCCCCcCCC-cCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceee
Confidence 665555555654 466777777777777 999999999998866 54322211111122 568999998 6999999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEE
Q 012368 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~ 405 (465)
+++++++++.+.... .+++.|+++++++.++|+. .++.++.++....+++.+.+.+.+++.+...++.|.++++.
T Consensus 237 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 311 (363)
T 3ffh_A 237 GIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKD---QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVLID 311 (363)
T ss_dssp EEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEEEE
T ss_pred eecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEEEE
Confidence 999999998887543 3788999999999999973 34555555555666666666665544455567778899988
Q ss_pred ecCChHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 406 FDVSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 406 ~~~~~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
++.+..++.+.|.++||.+.++.. ++++|++++ +++|+++++++|+++
T Consensus 312 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 312 LGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp CSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 865788899999999999998642 478999865 899999999999875
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=277.10 Aligned_cols=338 Identities=13% Similarity=0.094 Sum_probs=230.9
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHH
Q 012368 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTE 166 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~e 166 (465)
.+|+++|||.++.. .+| .+|.+++++.+++++.. +.+ ..+..+.++++++++.+.++ . ++|++|+||++
T Consensus 34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 47889999999874 566 78999999999876531 111 11122335555555544435 3 69999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (465)
|+..+++.+. + ++++|++.+|+||++...+...+..... .+......+. .|+++|+++++++.
T Consensus 111 a~~~~~~~~~---~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~~~~--~d~~~l~~~i~~~~ 173 (412)
T 2x5d_A 111 GLAHLMLATL---D--------HGDTILVPNPSYPIHIYGAVIAGAQVRS----VPLVPGIDFF--NELERAIRESIPKP 173 (412)
T ss_dssp HHHHHHHHHC---C--------TTCEEEEEESCCHHHHHHHHHHTCEEEE----EECSTTSCHH--HHHHHHHHTEESCC
T ss_pred HHHHHHHHhC---C--------CCCEEEEcCCCchhHHHHHHHcCCEEEE----eecCCccCCC--CCHHHHHHhcccCc
Confidence 9999999764 1 5789999999999987655443321110 0111110000 16789999987433
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccc----cCCcccEEEecccCC-Cc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEH----YGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~----~~~~pdi~t~sK~lg-~G 320 (465)
.++++++|.|++ |. .++.+++++|.++|++||++||+||+|+++.+.|. ...... .+..+.+.++||.++ +|
T Consensus 174 ~~v~l~~p~npt-G~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 174 RMMILGFPSNPT-AQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp SEEEEESSCTTT-CC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred eEEEECCCCCCC-CC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 344445665444 44 45889999999999999999999999999866553 111111 244455668999998 69
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 398 (465)
+|+||+++++++++.+.......+++.|+++++++.++|+...+ ++..++++++.+++.+.|++. ... ..++.
T Consensus 252 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~~ 326 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA--GWM---VENPK 326 (412)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH--TCC---CCCCS
T ss_pred cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCE---ecCCC
Confidence 99999999999998886544455788899999999999985321 234455555666666666554 222 22333
Q ss_pred -ceEEEEEecC-----ChHHHHHHHHH-CCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 399 -GLIIGIEFDV-----SATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 399 -g~~~~i~~~~-----~~~~~~~~l~~-~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|.++++.++. +..++.+.|++ +||++.++.. .+++|++++. +++++++++++|.++++++.
T Consensus 327 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 327 ASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp BSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred eeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcC
Confidence 6678888742 56789999875 6999987631 3689999875 89999999999999998754
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=274.68 Aligned_cols=329 Identities=12% Similarity=0.060 Sum_probs=229.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|+++|||.++.. .++ .+|+|++++.+++.+....+. .+..+.++++++++.+.++ .++|++|+||++|+.
T Consensus 29 ~g~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~ 105 (391)
T 3h14_A 29 AGRRIIHMEVGQP--GTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFL 105 (391)
T ss_dssp TTCCCEECCCSSC--SSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHH
Confidence 6889999999875 455 378999999998865322111 1123335666666655433 689999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-------CCHHHHHhhc
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------GNIEATRKLI 242 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l 242 (465)
.+++.+. .++++|++.+|+|+++...+...+.. +..+|. .|+++|+++
T Consensus 106 ~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~- 160 (391)
T 3h14_A 106 LAFTALF-----------DSGDRVGIGAPGYPSYRQILRALGLV-------------PVDLPTAPENRLQPVPADFAGL- 160 (391)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTTCE-------------EEEEECCGGGTTSCCHHHHTTS-
T ss_pred HHHHHhc-----------CCCCEEEEcCCCCccHHHHHHHcCCE-------------EEEeecCcccCCCCCHHHHHhc-
Confidence 9998764 16889999999999887554433321 122222 178888877
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-Cc
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg-~G 320 (465)
++++|+++..++++|. ..+.+.+++|.++|++||+++|+||+|++|.+.|.... ....+....+.++||.+| +|
T Consensus 161 ---~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 236 (391)
T 3h14_A 161 ---DLAGLMVASPANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTG 236 (391)
T ss_dssp ---CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT
T ss_pred ---CCeEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcc
Confidence 3444444444444454 45788899999999999999999999999877664322 222233344558999998 79
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-c
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-G 399 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g 399 (465)
+|+||+++++++++.+.......+++.++++++++.++|+ ..+..++.++....+++.+.+.+.+++.....++. +
T Consensus 237 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 313 (391)
T 3h14_A 237 WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGA 313 (391)
T ss_dssp SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBT
T ss_pred ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCee
Confidence 9999999999998888655556678889999999988887 33444555555555555555544444543333333 4
Q ss_pred eEEEEEec---CChHHHHHHHHHC-CceEeecC------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 400 LIIGIEFD---VSATPVVDACRDS-GLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 400 ~~~~i~~~---~~~~~~~~~l~~~-Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++++.++ .+..++.+.|+++ ||.+.++. ..+++|++++. +++++++++++|++++++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 314 FYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp TEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence 66777773 3677899998875 99998752 13689998775 78999999999999988654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=282.47 Aligned_cols=334 Identities=18% Similarity=0.143 Sum_probs=233.7
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhc--cccc-CCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVS-NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~--~~~~-~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
.|+++|||..+.+ .++ .+|.|.+++.+++++. ..+. ..+..+.++++++++.+.++ .++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 4567899999875 455 7899999999998752 1111 11223446677777766555 46899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCc-------eEeeC-CCHHHHHh
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV-------NFVEY-GNIEATRK 240 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~d~~~le~ 240 (465)
..+++.+. .++++|++.+|+||++...+...+...... +..+.. ....+ .|+++|++
T Consensus 132 ~~~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v----~~~~~~~~~~~~~~~~~~~~d~~~l~~ 196 (447)
T 3b46_A 132 LSCLMGLL-----------NAGDEVIVFEPFFDQYIPNIELCGGKVVYV----PINPPKELDQRNTRGEEWTIDFEQFEK 196 (447)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE----EEECCGGGGTSCBCSTTSEECHHHHHT
T ss_pred HHHHHHHc-----------CCCCEEEEeCCCchhHHHHHHHcCCEEEEE----eCCCccccccccccccCcccCHHHHHH
Confidence 99999764 268999999999999876554433221111 110100 00001 28999999
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc---ccc--cccCCcccEEEecc
Q 012368 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---WAH--EHYGIFPDIMTLAK 315 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~---~~~--~~~~~~pdi~t~sK 315 (465)
++++ ++++|++++.++++|.+ ++++++++|+++|++||++||+||+|+++.+.|.. ..+ +.++..+++.++||
T Consensus 197 ~l~~-~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK 274 (447)
T 3b46_A 197 AITS-KTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGK 274 (447)
T ss_dssp TCCT-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHH
T ss_pred hhcc-CCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCch
Confidence 9974 56666665555555554 57899999999999999999999999998766531 112 13466677889999
Q ss_pred cCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHHHHHHHHHHcC
Q 012368 316 PLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL----ASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 316 ~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~ 389 (465)
.++ .|+|+||+++ ++++++.+....+..+++.++++++++.++|+....+++. ++++++.+++.+.|+++
T Consensus 275 ~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 350 (447)
T 3b46_A 275 SFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL---- 350 (447)
T ss_dssp HTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 999 6999999999 9999988865444567888999999999999865333434 44445555555555443
Q ss_pred CCceeeeccceEEEEEecC-----------------ChHHHHHHHH-HCCceEeecC----------CCCEEEEecCCCC
Q 012368 390 PHVKDVRGLGLIIGIEFDV-----------------SATPVVDACR-DSGLLVLTAG----------KGNVVRLVPPLII 441 (465)
Q Consensus 390 ~~~~~~~~~g~~~~i~~~~-----------------~~~~~~~~l~-~~Gv~v~~~~----------~~~~lRi~~~~~~ 441 (465)
+.....+..|.++++++.. +..++++.|+ ++||.+.|+. .++++||+++ .
T Consensus 351 g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~ 428 (447)
T 3b46_A 351 GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--K 428 (447)
T ss_dssp TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--S
T ss_pred CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--C
Confidence 3222234457788888742 2457888887 5899998762 0378999876 4
Q ss_pred cHHHHHHHHHHHHH
Q 012368 442 SEQELDQAVEILCK 455 (465)
Q Consensus 442 t~e~i~~~l~~l~~ 455 (465)
++++|++++++|++
T Consensus 429 ~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 429 DDAYLENAVERLKL 442 (447)
T ss_dssp CHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHH
Confidence 89999999999976
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=275.58 Aligned_cols=324 Identities=11% Similarity=-0.002 Sum_probs=233.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
+| ++|||.++.. +++ .||.|++++.+++.....+.. .+..+.++++++++.+.++ .++|++|+||++|+..
T Consensus 22 ~g-~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 22 KK-RGLDLGIGEP--QFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp SS-CCCBCSSCCC--CSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred cC-CEEEeCCCCC--CCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 67 8999999875 566 689999999988744322221 1223446777777766655 5799999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCC--CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHH----HHHhhcCC
Q 012368 171 AIKFARKFQRHSNPDSKEP--ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE----ATRKLIQP 244 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~--~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~le~~l~~ 244 (465)
+++.+.. + +++|++.+|+||++...+...+... ..+|.++.+ ++++.+.+
T Consensus 98 ~~~~~~~-----------~~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~~~~l~~~~~~ 153 (376)
T 3ezs_A 98 FPSFVLF-----------DYQNPTIAYPNPFYQIYEGAAKFIKAKS-------------LLMPLTKENDFTPSLNEKELQ 153 (376)
T ss_dssp HHHHHTT-----------TCSSCEEEEEESCCTHHHHHHHHTTCEE-------------EEEECCGGGTSCCCCCHHHHH
T ss_pred HHHHHcC-----------CCCCCEEEEecCCcHhHHHHHHHcCCEE-------------EEcccCCCCCcchhHHhhhcc
Confidence 9997752 5 7899999999998876554433221 122221110 34444443
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-c--------ccCCcccEEEecc
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-E--------HYGIFPDIMTLAK 315 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~--------~~~~~pdi~t~sK 315 (465)
+..++++++|.| ++|. .++.+.+++|+++|++||++||+||+|++|.+.+..... . ..+..+.+.++||
T Consensus 154 ~~~~v~~~~p~n-ptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 231 (376)
T 3ezs_A 154 EVDLVILNSPNN-PTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSK 231 (376)
T ss_dssp HCSEEEECSSCT-TTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTT
T ss_pred CCCEEEEcCCCC-CcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchh
Confidence 233444445544 4444 458888999999999999999999999998776643222 1 3455667789999
Q ss_pred cCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 316 PLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 316 ~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+. .+..++.++.....++.+.+.+. +. .
T Consensus 232 ~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~-~- 304 (376)
T 3ezs_A 232 RSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NT-L- 304 (376)
T ss_dssp TTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TC-C-
T ss_pred ccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CC-C-
Confidence 997 6999999999999998887655566788999999999999983 34455555555555666655544 22 2
Q ss_pred eeccceEEEEEecCChHHHHHHHHH-CCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 395 VRGLGLIIGIEFDVSATPVVDACRD-SGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 395 ~~~~g~~~~i~~~~~~~~~~~~l~~-~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+..|.++++.++ +..++.+.|++ +||++.++. ..+++||+++ .+++++++++++|++++++
T Consensus 305 ~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 305 IYPYSFYVYLPVQ-NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp CCSBSSEEEEECS-CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred CCCcceEEEEECC-CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 4567888888885 67889999998 899998752 2478999876 3999999999999998864
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=302.48 Aligned_cols=352 Identities=12% Similarity=0.047 Sum_probs=243.6
Q ss_pred eEEEeeeccEEEeCCCC--EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC----C
Q 012368 82 VVLASGKGCKLYDAEGR--EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----A 155 (465)
Q Consensus 82 ~~~~~~~G~~~~d~dG~--~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~ 155 (465)
++..+++|+++||.+|+ +++||..+.+ .++ .+|++++++.+++.+..+.+.....+.++++++++.+.++ .
T Consensus 13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~ 89 (392)
T 3b1d_A 13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFDK 89 (392)
Confidence 44567999999999999 9999988865 455 6789999999988653222111123335566666655544 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCC
Q 012368 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGN 234 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d 234 (465)
++|++++||++|+..+++++.. ++++|++.+|+||++...+...+..... .+.... ..+. .|
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~~-----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~g~~~--~d 152 (392)
T 3b1d_A 90 EDIVFVEGVVPAISIAIQAFTK-----------EGEAVLINSPVYPPFARSVRLNNRKLVS----NSLKEENGLFQ--ID 152 (392)
Confidence 7899999999999999997752 5789999999999988655443322111 111100 0000 27
Q ss_pred HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc----cccccc--cCCcc
Q 012368 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----LWAHEH--YGIFP 308 (465)
Q Consensus 235 ~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~----~~~~~~--~~~~p 308 (465)
+++|+++++..++++|++...++++|. .++.+++++|+++|++||++||+||+|++|.+.|. ...+.. .+..+
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i 231 (392)
T 3b1d_A 153 FEQLENDIVENDVKLYLLCNPHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFAL 231 (392)
Confidence 888998887334556665444444554 45778999999999999999999999999876653 222222 44557
Q ss_pred cEEEecccCC-CccceeeEEeCH-HHHhhccCCCCcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 012368 309 DIMTLAKPLA-GGLPIGAALVTE-KVASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 309 di~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~~~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~ 385 (465)
++.++||+++ +|+|+||+++++ ++++.+.......++ +.|+++++++.++|+.. +++.+++++.....++.+.+.
T Consensus 232 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~ 309 (392)
T 3b1d_A 232 VLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLEENIQFAVEY 309 (392)
Confidence 7889999998 799999999875 588888754444443 46899999999988742 344455555555555555555
Q ss_pred HHc-CCCceeeeccceEE-EEEec---CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 386 LAR-NPHVKDVRGLGLII-GIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 386 ~~~-~~~~~~~~~~g~~~-~i~~~---~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+.+ +|.+..+++.|.++ ++++. .+..++.+.|+ ++||++.++.. ++++|+++. .+++++++++++|+
T Consensus 310 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~e~i~~~l~~l~ 387 (392)
T 3b1d_A 310 FAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA--APKSLVEEICKRIV 387 (392)
Confidence 444 44444455666665 46763 24567888897 78999987531 257888654 47899999999999
Q ss_pred HHHH
Q 012368 455 KTLP 458 (465)
Q Consensus 455 ~~l~ 458 (465)
++++
T Consensus 388 ~~l~ 391 (392)
T 3b1d_A 388 CCLP 391 (392)
Confidence 8775
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=276.64 Aligned_cols=330 Identities=13% Similarity=0.062 Sum_probs=233.6
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHHhhc----CC----C-eEEecCCHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACS----FA----D-RVFFSNTGT 165 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~----~~----~-~v~~~~sG~ 165 (465)
+|+++|||.++.+ .+| .+|.+++++.+++++.. ...|+. ....++++.+++++ +. + +|++++||+
T Consensus 23 ~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~ 97 (376)
T 2dou_A 23 RGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPT--TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQ 97 (376)
T ss_dssp TTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGG--GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHH
T ss_pred cCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCC--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence 5788999999875 577 58999999999886521 123444 23556666666654 62 4 899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (465)
+|+..+++.+. .++++|++.+|+||++...+...+...... +...+.. .|+++|++++++
T Consensus 98 ~a~~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~----~d~~~l~~~l~~- 157 (376)
T 2dou_A 98 EGLAHLLLALT-----------EPEDLLLLPEVAYPSYFGAARVASLRTFLI----PLREDGL----ADLKAVPEGVWR- 157 (376)
T ss_dssp HHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHHHHHTTCEEEEE----CBCTTSS----BCGGGSCHHHHH-
T ss_pred HHHHHHHHHhc-----------CCCCEEEECCCCcHhHHHHHHHcCCEEEEe----eCCCCCC----CCHHHHHHhhcc-
Confidence 99999998764 157899999999999876654433221111 1111111 277888887753
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccc---cCCcccEEEecccCC-Cc
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH---YGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~---~~~~pdi~t~sK~lg-~G 320 (465)
++++|+++..++++|. .++.+++++|.++|++||++||+||+|+++.+.|... .... .+..+++.++||.++ +|
T Consensus 158 ~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 236 (376)
T 2dou_A 158 EAKVLLLNYPNNPTGA-VADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG 236 (376)
T ss_dssp HEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG
T ss_pred CceEEEECCCCCCcCc-cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh
Confidence 4666666533444454 4588999999999999999999999999886655321 1222 234455678999998 68
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cc
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LG 399 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g 399 (465)
+|+||+++++++++.+.......+++.|+++++++.++|+.. +++.++.++.....++.+.+.+.++ +...++ .|
T Consensus 237 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~ 312 (376)
T 2dou_A 237 FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LSLLPPRAT 312 (376)
T ss_dssp GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBS
T ss_pred heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCee
Confidence 999999999999988865444556778999999999888742 3455555555555566666655554 333333 46
Q ss_pred eEEEEEec--CChHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 400 LIIGIEFD--VSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 400 ~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.+++++++ .+..++.+.|+++||.+.++.. .+++|++++. +++++++++++|++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 313 MYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 67888874 3467899999999999987531 3789998764 8999999999998764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=271.06 Aligned_cols=323 Identities=11% Similarity=0.059 Sum_probs=227.5
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|++++||.++.+ .+|+ +|.+++++.++++.....+. ....+.++++++++.+.++ .++|++++||++|+.
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 4778899998865 5776 79999999998875322111 1123346666666655433 578999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
.+++.+. .++++|++.+|+||++...+...+. .+..+| .|+++|++++++ ++++
T Consensus 104 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~-~d~~~l~~~l~~-~~~~ 157 (370)
T 2z61_A 104 FALSSII-----------DDGDEVLIQNPCYPCYKNFIRFLGA-------------KPVFCD-FTVESLEEALSD-KTKA 157 (370)
T ss_dssp HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHTTC-------------EEEEEC-SSHHHHHHHCCS-SEEE
T ss_pred HHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHcCC-------------EEEEeC-CCHHHHHHhccc-CceE
Confidence 9999764 1578999999999998755433221 223344 589999999975 5666
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccccc----CCcccEEEecccCC-Ccccee
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY----GIFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~----~~~pdi~t~sK~lg-~G~~iG 324 (465)
|+++..++.+|.+.+ ++ |.++|++||++||+||+|+++.+.|.......+ +....+.++||.++ +|+|+|
T Consensus 158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 666555555666554 33 999999999999999999988665543222222 33334558999998 689999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-hcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-ISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
++++++++++.+.......+++.|+++++++.++|+. ..+ ++..++++++.+++.+.|++. +.....+..|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~ 308 (370)
T 2z61_A 233 YVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNNPIGAYY 308 (370)
T ss_dssp EEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCCCCBTTE
T ss_pred EEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCcceE
Confidence 9999999988886544556678899999998888864 211 234455555566666555543 221112233666
Q ss_pred EEEEecCChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 402 IGIEFDVSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 402 ~~i~~~~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+++.++.+..++.+.|+ ++||.+.++. ..+++|++++ ++++++++++++|+++++
T Consensus 309 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 309 VFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp ECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 67776436778999998 7899998752 1368999887 699999999999998764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=269.17 Aligned_cols=338 Identities=15% Similarity=0.077 Sum_probs=235.8
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|++++||.++.+ .++ .+|.+.+++.++++.....+. .+..+.+.++++++.+.++ .++|++++||++|+.
T Consensus 28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 6788999999865 466 679999999998865321111 1123346666666665544 578999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhhcCCCCeE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTA 248 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a 248 (465)
.+++.+. .++++|++.+|+||++...+...+..... .+..... .+ .|+++|++++++ +++
T Consensus 105 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~---~~~~d~~~l~~~l~~-~~~ 165 (388)
T 1j32_A 105 NLMLAMI-----------EPGDEVIIPAPFWVSYPEMVKLAEGTPVI----LPTTVET---QFKVSPEQIRQAITP-KTK 165 (388)
T ss_dssp HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHTTCEEEE----ECCCGGG---TTCCCHHHHHHHCCT-TEE
T ss_pred HHHHHhc-----------CCCCEEEEcCCCChhHHHHHHHcCCEEEE----ecCCccc---CCCCCHHHHHHhcCc-Cce
Confidence 9999774 15789999999999977544332221110 1111100 01 279999999975 466
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc----ccccc--cCCcccEEEecccCC-Ccc
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEH--YGIFPDIMTLAKPLA-GGL 321 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~----~~~~~--~~~~pdi~t~sK~lg-~G~ 321 (465)
+|++++.++.+|.+ ++++.+++|.++|++||+++|+||+|+++.+.|.. ..+.. ++..+++.++||.++ .|+
T Consensus 166 ~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 166 LLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred EEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence 66655555555654 57889999999999999999999999998665531 11211 345567779999998 589
Q ss_pred ceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ce
Q 012368 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GL 400 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~ 400 (465)
|+|++++++++++.+.......+++.+++++.++.++|+.. +++.+++++.....++.+.+.+.+++.+....+. |.
T Consensus 245 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 322 (388)
T 1j32_A 245 RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF 322 (388)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTT
T ss_pred ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeE
Confidence 99999999999888765445567888999999999988743 3334444444444444555544555433333333 45
Q ss_pred EEEEEec---CChHHHHHHHHH-CCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 401 IIGIEFD---VSATPVVDACRD-SGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 401 ~~~i~~~---~~~~~~~~~l~~-~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++++.+. .+..++.+.|++ +||.+.++. .++++|++++ ++++++++++++|+++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 323 YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 5566553 356789999986 799998863 1378999875 68999999999999998764
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=277.10 Aligned_cols=340 Identities=11% Similarity=0.089 Sum_probs=240.3
Q ss_pred eeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-cccCC--CCCHHHHHHHHHHHhhcC----CCeEE
Q 012368 87 GKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNM--YYSIPQIELAKRLVACSF----ADRVF 159 (465)
Q Consensus 87 ~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~~--~~~~~~~~la~~l~~~~~----~~~v~ 159 (465)
.....+++.+|+++|||.++.. +++ .+|.|++++.+++.... ..+.. +..+.++++++++.+.++ .++|+
T Consensus 33 ~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~ 109 (437)
T 3g0t_A 33 ALVTNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACV 109 (437)
T ss_dssp HHHHHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred HHHHHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEE
Confidence 4445566778999999999976 455 78999999999887522 11111 112335566666655433 67999
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc--eEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC----
Q 012368 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPAT--EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG---- 233 (465)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 233 (465)
+|+||++|+..+++.+..+ + +++ +|++.+|+|+++...+...+.. +..+|.+
T Consensus 110 ~t~g~t~al~~~~~~l~~~-~--------~gd~~~Vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~ 167 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVANRT-H--------KNREYGTLFIDPGFNLNKLQCRILGQK-------------FESFDLFEYRG 167 (437)
T ss_dssp EESHHHHHHHHHHHHHTTS-C--------TTCSCCEEEEESCCHHHHHHHHHHTCC-------------CEEEEGGGGCT
T ss_pred EeCCHHHHHHHHHHHHhcC-C--------CCCccEEEEeCCCcHhHHHHHHHcCCE-------------EEEEeecCCCC
Confidence 9999999999999876410 1 577 8999999999987655443322 2222221
Q ss_pred --CHHHHHhhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc---------ccc
Q 012368 234 --NIEATRKLIQ-PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---------WAH 301 (465)
Q Consensus 234 --d~~~le~~l~-~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~---------~~~ 301 (465)
|+++|+++++ ++..++++++|.|++ |. ..+.+.+++|.++|++||++||+||+|+++.+.+.. ..+
T Consensus 168 ~~d~~~l~~~l~~~~~~~v~l~~p~npt-G~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
T 3g0t_A 168 EKLREKLESYLQTGQFCSIIYSNPNNPT-WQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSV 245 (437)
T ss_dssp THHHHHHHHHHTTTCCCEEEEESSCTTT-CC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCG
T ss_pred ccCHHHHHHHHhcCCceEEEEeCCCCCC-CC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhcc
Confidence 7899999994 433445556775444 44 457888999999999999999999999986544321 122
Q ss_pred cc-cCCcccEEEecccCC-CccceeeEEeCHHHHh-h-----------------ccCCCCcCCCCChHHHHHHHHHHHHH
Q 012368 302 EH-YGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS-A-----------------INYGDHGSTFAGSPLVCNAAIAVLDK 361 (465)
Q Consensus 302 ~~-~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~-~-----------------~~~~~~~~t~~~~~~~~~aa~a~L~~ 361 (465)
.. .+....+.++||.++ .|+|+||+++++++++ . +.......+++.++++++++.++|+.
T Consensus 246 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 325 (437)
T 3g0t_A 246 ANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKA 325 (437)
T ss_dssp GGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhC
Confidence 21 344445668999999 6999999999999998 7 65444455778899999999999987
Q ss_pred hcC-----chHHHHHHHHHHHHHHHHHHHHHcCCCceee-------e-ccceEEEEEec-CChHHHHHHHHHCCceEeec
Q 012368 362 ISN-----PAFLASVSKKGHYFKETLKQKLARNPHVKDV-------R-GLGLIIGIEFD-VSATPVVDACRDSGLLVLTA 427 (465)
Q Consensus 362 ~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------~-~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~ 427 (465)
... +...++++++.+++.+.| .+++ +... + ..|.++++.++ .+..++.+.|.++||.+.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~ 400 (437)
T 3g0t_A 326 CNDGEYNFRDSVIEYGRKARIMKKMF----LDNG-FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITL 400 (437)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHHHHH----HTTT-EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEES
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHH----HHcC-CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeec
Confidence 532 234444455555555444 4443 2222 4 56788888884 56788999999999999886
Q ss_pred CC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 428 GK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 428 ~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.. ++++|++++.. +++++++++++|++++++
T Consensus 401 ~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 401 KTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred cccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 42 16799998844 999999999999988753
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-32 Score=268.85 Aligned_cols=338 Identities=12% Similarity=0.062 Sum_probs=229.8
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHHhhcC----CCe-EEecCCHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADR-VFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~----~~~-v~~~~sG~eA~~~a 171 (465)
.++||.++.. .++ .+|.+.+++.+++++....+.. ...+.+.++++++.+.++ .++ |++|+||++|+..+
T Consensus 27 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~ 103 (389)
T 1gd9_A 27 DVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 103 (389)
T ss_dssp SCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHH
T ss_pred CeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHH
Confidence 5789988865 466 6899999999998763221111 123345666666655445 578 99999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhhcCCCCeEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a~v 250 (465)
++.+. .++++|++.+|+||++...+...+..... .+...+. .+ -|+++|++++++ ++++|
T Consensus 104 ~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~---~~~~d~~~l~~~l~~-~~~~v 164 (389)
T 1gd9_A 104 LSAFL-----------KDGEEVLIPTPAFVSYAPAVILAGGKPVE----VPTYEED---EFRLNVDELKKYVTD-KTRAL 164 (389)
T ss_dssp HTTTC-----------CTTCEEEEEESCCTTHHHHHHHHTCEEEE----EECCGGG---TTCCCHHHHHHHCCT-TEEEE
T ss_pred HHHhC-----------CCCCEEEEcCCCchhHHHHHHHCCCEEEE----eccCCcc---CCCCCHHHHHHhcCc-CceEE
Confidence 98653 15889999999999987554333321110 0111100 01 189999999975 46666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-ccccccc-CC-ccc--EEEecccCC-Ccccee
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHY-GI-FPD--IMTLAKPLA-GGLPIG 324 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~-~~-~pd--i~t~sK~lg-~G~~iG 324 (465)
+++..++++|. .++.+.+++|.++|++||+++|+||+|+++.+.|. ......+ +. ..| +.++||.++ +|+|+|
T Consensus 165 ~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (389)
T 1gd9_A 165 IINSPCNPTGA-VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 243 (389)
T ss_dssp EEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred EEECCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceE
Confidence 66544444554 45788999999999999999999999999866554 2222222 21 234 557999998 689999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i 404 (465)
++++++++++.+.......+++.+++++.++.++|+....+.+.+++++.....++.+.+.+.+++.....+..|.++++
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 323 (389)
T 1gd9_A 244 FVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFP 323 (389)
T ss_dssp EEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECC
T ss_pred EEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEE
Confidence 99999999888865445567888999999999888753221234444444334444444433333321112233566777
Q ss_pred Eec---CChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 405 EFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 405 ~~~---~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++ .+..++.+.|+ ++||.+.++. .++++||+++. +++++++++++|.+++++.+
T Consensus 324 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 324 RIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKERK 387 (389)
T ss_dssp BCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred eccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcc
Confidence 763 35778999998 8999998763 13689998774 89999999999999987643
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=269.03 Aligned_cols=333 Identities=17% Similarity=0.159 Sum_probs=234.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
.|++++||.++.+ .+++ +|.+.+++.++++.....+. .+..+.++++++++.+.++ .++|++++||++|+.
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 4778899998865 5674 79999999998875322111 1122335566666654434 578999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhhcCCCCeE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTA 248 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a 248 (465)
.+++.+. .++++|++.+|+|+++...+...+..... .+...+. .+ .|+++|++++++ +++
T Consensus 116 ~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~---~~~~d~~~l~~~l~~-~~~ 176 (389)
T 1o4s_A 116 NAFMALL-----------DPGDEVIVFSPVWVSYIPQIILAGGTVNV----VETFMSK---NFQPSLEEVEGLLVG-KTK 176 (389)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEE----EECCGGG---TTCCCHHHHHHTCCT-TEE
T ss_pred HHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHcCCEEEE----EecCCcc---CCCCCHHHHHHhccc-Cce
Confidence 9999764 15789999999999987554333221110 0111100 01 178999999975 466
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccc----cCCcccEEEecccCC-Cccce
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH----YGIFPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~----~~~~pdi~t~sK~lg-~G~~i 323 (465)
+|+++..++.+|. .++++++++|.++|++||++||+||+|+++.+.|....... .+....+.++||+++ .|+|+
T Consensus 177 ~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 255 (389)
T 1o4s_A 177 AVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV 255 (389)
T ss_dssp EEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC
T ss_pred EEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccce
Confidence 6666554555565 45789999999999999999999999998866553222222 233344568999998 68999
Q ss_pred eeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEE
Q 012368 324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~ 403 (465)
|++++++++++.+.......+++.+++++.++.++|+.. .+++.++++++.+++.+.|+++ .+... .+..|.+++
T Consensus 256 G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~ 330 (389)
T 1o4s_A 256 GYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEGAFYLF 330 (389)
T ss_dssp EEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSBSSEEE
T ss_pred EEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCcceEEE
Confidence 999999999888765444557788999999988888643 3556677777777777777664 33221 122366677
Q ss_pred EEecCChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 404 IEFDVSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 404 i~~~~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+.++.+..++.+.|+ ++||.+.++. .++++|++++ .+++++++++++|.++++
T Consensus 331 ~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 331 FKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp EECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 776445678999998 8999998763 1368999877 389999999999998874
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=267.63 Aligned_cols=327 Identities=15% Similarity=0.104 Sum_probs=229.1
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH-HHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~ 176 (465)
++||.++.+ .++ .+|.+.+++.+++++ .. .|+.. ...++++.++++++ .++|++++||++|++.+++.+.
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~-~~---~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~ 99 (381)
T 1v2d_A 27 AVNLGQGFP--SNP-PPPFLLEAVRRALGR-QD---QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (381)
T ss_dssp CEECCCCSC--SSC-CCHHHHHHHHHHTTT-SC---SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred eEEecCCCC--CCC-CCHHHHHHHHHHHHH-hc---CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence 689988865 455 789999999998875 11 22222 35688888888887 4689999999999999999774
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
.++++|++.+|+||++...+...+.... . .+.. +.. . ..|+++|++++++ ++++|++++
T Consensus 100 -----------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~-~---v~~~~~~~~-~--~~d~~~l~~~l~~-~~~~v~~~~ 160 (381)
T 1v2d_A 100 -----------GPGDEVVVLEPFFDVYLPDAFLAGAKAR-L---VRLDLTPEG-F--RLDLSALEKALTP-RTRALLLNT 160 (381)
T ss_dssp -----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-E---EECEEETTE-E--ECCHHHHHTTCCT-TEEEEEEES
T ss_pred -----------CCCCEEEEcCCCchhHHHHHHHcCCEEE-E---EeCCCCCcc-C--CcCHHHHHHhcCc-CCEEEEECC
Confidence 1588999999999998754332221111 0 1111 000 0 1389999999975 567777665
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-ccccc--ccCCcccEEEecccCC-CccceeeEEeCH
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHE--HYGIFPDIMTLAKPLA-GGLPIGAALVTE 330 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~--~~~~~pdi~t~sK~lg-~G~~iG~v~~~~ 330 (465)
.++.+|.+ ++.+++++|.++|++||+++|+||+|+++.+ |. ..... ..+..+++.++||.++ .|+|+|++++++
T Consensus 161 ~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~ 238 (381)
T 1v2d_A 161 PMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPK 238 (381)
T ss_dssp SCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCT
T ss_pred CCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCH
Confidence 55555654 5789999999999999999999999998744 32 11111 3466777889999998 589999999999
Q ss_pred HHHhhccCCCCcCCCCChHHHHHHHHHHHHHh--cC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe
Q 012368 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKI--SN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~--~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~ 406 (465)
++++.+.......+++.++++++++.++|+.. .+ ++..++++++.+++.+.|++ .+.....+..|.++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~ 314 (381)
T 1v2d_A 239 EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA----MGLRVYVPEGTYFLMAEL 314 (381)
T ss_dssp TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH----TTCCEECCSBSSEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH----CCCEecCCCcceEEEEec
Confidence 88887764434456788999999999999865 22 23445555566666655554 232212223367788887
Q ss_pred cCChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 407 DVSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 407 ~~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
+.. . +.+.|.++||.+.++. .++++||+++. +++++++++++|++++++.++
T Consensus 315 ~~~-~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 315 PGW-D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp TTC-C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC-----
T ss_pred ChH-h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccc
Confidence 432 2 6677789999998752 13689999875 899999999999999887654
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=273.86 Aligned_cols=336 Identities=15% Similarity=0.090 Sum_probs=230.9
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhc-ccccC--CCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHH
Q 012368 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN--MYYSIPQIELAKRLVACSF----A-DRVFFSNTGTE 166 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~-~~~~~--~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~e 166 (465)
..|+++|||.++.+ .+| .+|.|++++.+++++. ...+. ....+.++++++++.+.++ + ++|++++||++
T Consensus 44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 35788999999876 567 6899999999987542 11111 1222335555555555446 2 68999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCC
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~ 245 (465)
|+..+++.+. .++++|++.+|+||++...+...+..... .+... +.. .|+++|++++++
T Consensus 121 al~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~----~d~~~l~~~l~~- 180 (404)
T 2o1b_A 121 GLVAVPTCVI-----------NPGDYVLLPDPGYTDYLAGVLLADGKPVP----LNLEPPHYL----PDWSKVDSQIID- 180 (404)
T ss_dssp HHHHHHHHHC-----------CTTCEEEEEESCCSSHHHHHHHTTCEEEE----EECCTTTCC----CCGGGSCHHHHH-
T ss_pred HHHHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHCCCEEEE----eccCcccCc----CCHHHHHHhhcc-
Confidence 9999999764 15789999999999987655443322111 11111 111 277888888753
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-cc---cCCcccEEEecccCC-Cc
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EH---YGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~~---~~~~pdi~t~sK~lg-~G 320 (465)
++++|+++..++++|. .++.+++++|.++|++||++||+||+|++|.+.|..... .. .+..+.+.++||.++ +|
T Consensus 181 ~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 259 (404)
T 2o1b_A 181 KTKLIYLTYPNNPTGS-TATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG 259 (404)
T ss_dssp HEEEEEECSSCTTTCC-CCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG
T ss_pred CceEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch
Confidence 4667666533444454 458899999999999999999999999988665532111 11 233455668999998 68
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cc
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LG 399 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g 399 (465)
+|+||+++++++++.+.......+++.++++++++.++|+.. +++.+++++.....++.+.+.+.+++. ...++ .|
T Consensus 260 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~g 336 (404)
T 2o1b_A 260 FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY--DDFLEEQSNVFKTRRDRFEAMLAKADL-PFVHAKGG 336 (404)
T ss_dssp GCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTC-CEECCCBS
T ss_pred hheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhcCC-eecCCCcc
Confidence 999999999999988865444556788999999999999863 334444444444444444444444432 23333 35
Q ss_pred eEEEEEec--CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 400 LIIGIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 400 ~~~~i~~~--~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++++.++ .+..++.+.|+ ++||.+.++.. .+++||+++. +++++++++++|++++++
T Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 337 IYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 66888874 24578889887 57999987531 3789998875 788999999999988764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=268.08 Aligned_cols=332 Identities=13% Similarity=0.111 Sum_probs=233.9
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc----c-c-cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT----H-V-SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTE 166 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~----~-~-~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~e 166 (465)
|+++|||.++.. .+ ..+|.+++++.+++.+.. + + ...+..+.++++++++.+.++ .++|++|+||++
T Consensus 34 ~~~~i~l~~~~~--~~-~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIGNP--SI-PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSCCC--CS-CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecCCC--CC-CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 467899998844 22 378999999999987631 1 1 111223446677777766554 679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCC
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQP 244 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~ 244 (465)
|+..+++.+.. ++ ++|++.+|+|+++...+...+...... +... +.. -|+++|++++++
T Consensus 111 al~~~~~~l~~-----------~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~~~~----~d~~~l~~~l~~ 171 (398)
T 3ele_A 111 SLSICFRALTS-----------DAYDEFITIAPYFPEYKVFVNAAGARLVEV----PADTEHFQ----IDFDALEERINA 171 (398)
T ss_dssp HHHHHHHHHCC-----------STTCEEEEESSCCTHHHHHHHHTTCEEEEE----CCCTTTSS----CCHHHHHHTCCT
T ss_pred HHHHHHHHHcC-----------CCCCEEEEeCCCchhhHHHHHHcCCEEEEE----ecCCcCCc----CCHHHHHHHhCc
Confidence 99999997741 57 899999999999876554433221111 1111 111 189999999975
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCEEEEeccccCCCCCCcc--ccccccCCcccEEEeccc
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD------AGALLVFDEVQCGLGRTGYL--WAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~~g~gr~g~~--~~~~~~~~~pdi~t~sK~ 316 (465)
++++|+++..++++|. .++.+.+++|.++|++ ||++||+||+|++|.+.|.. .....++..+.+.++||.
T Consensus 172 -~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 249 (398)
T 3ele_A 172 -HTRGVIINSPNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS 249 (398)
T ss_dssp -TEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTT
T ss_pred -CCCEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhc
Confidence 4666665443444454 4578889999999999 99999999999998776632 222344555666789999
Q ss_pred CC-CccceeeEEeCHHHHh------hccCC-CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012368 317 LA-GGLPIGAALVTEKVAS------AINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 317 lg-~G~~iG~v~~~~~i~~------~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
++ +|+|+||+++++++++ .+... ....+++.+++++.++.+.++ .....++++++.+++.+.|+++ .
T Consensus 250 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~--g 324 (398)
T 3ele_A 250 LSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI--G 324 (398)
T ss_dssp SSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH--T
T ss_pred CCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc--C
Confidence 99 7999999999887443 22211 122466778888888776665 3345678888888888888775 2
Q ss_pred CCCceeeeccceEEEEEec-CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 389 NPHVKDVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
. ....+..|.++++.++ .+..++.+.|.++||.+.++. .++++|++++ ++++++++++++|++++++++
T Consensus 325 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 325 Y--HCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp C--CEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred C--eecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence 2 1122233555888874 467789999999999998864 1478999875 699999999999999998765
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=269.79 Aligned_cols=340 Identities=13% Similarity=0.091 Sum_probs=237.4
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcc---ccc-CCCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVS-NMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANE 169 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~-~~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~eA~~ 169 (465)
.+|||..+.. .++ .+|.|++++.+++.+.. .+. ..+..+.++++++++.+.++ . ++|++|+||++|+.
T Consensus 29 ~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~ 105 (422)
T 3fvs_A 29 DVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF 105 (422)
T ss_dssp CCEECCCSSC--SSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred CceEeCCCCC--CCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence 5789988865 343 78999999999987632 111 11223446777777776655 2 68999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC--CCC-----ceEeeCCCHHHHHhhc
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV--MPG-----VNFVEYGNIEATRKLI 242 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~d~~~le~~l 242 (465)
.+++.+. .++++|++.+|+||++...+...+...... +..+. ..+ ..+ .-|+++|++++
T Consensus 106 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~G~~~~~~~~--~~d~~~l~~~~ 171 (422)
T 3fvs_A 106 TAFQALV-----------DEGDEVIIIEPFFDCYEPMTMMAGGRPVFV-SLKPGPIQNGELGSSSNW--QLDPMELAGKF 171 (422)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECBCCCCCSSSCCBGGGS--BCCHHHHHTTC
T ss_pred HHHHHHc-----------CCCCEEEEcCCCchhhHHHHHHcCCEEEEE-ecccccccccccccccCC--CCCHHHHHhhc
Confidence 9999764 168899999999999876554433222111 01000 000 000 02899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc----cCCcccEEEecccC
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH----YGIFPDIMTLAKPL 317 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~----~~~~pdi~t~sK~l 317 (465)
++ ++++|+++..++++|.+ ++++.+++|+++|++||++||+||+|++|.+.|.. ..... ++..+++.++||.+
T Consensus 172 ~~-~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 249 (422)
T 3fvs_A 172 TS-RTKALVLNTPNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF 249 (422)
T ss_dssp CT-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHH
T ss_pred CC-CceEEEECCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhcc
Confidence 75 46666665555555654 58899999999999999999999999998776642 12222 23335566899999
Q ss_pred C-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-----hcCchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012368 318 A-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 318 g-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
| +|+|+||+++++++++.+.......+++.++++++++.++|+. ...+++.+++++.....++.+.+.+.+++.
T Consensus 250 g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 329 (422)
T 3fvs_A 250 SATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL 329 (422)
T ss_dssp TCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8 6999999999999998886555567888999999999999985 222445555666666666666666666654
Q ss_pred ceeeeccceEEEEEecC-----C----------hHHHHHHHH-HCCceEeecC----------CCCEEEEecCCCCcHHH
Q 012368 392 VKDVRGLGLIIGIEFDV-----S----------ATPVVDACR-DSGLLVLTAG----------KGNVVRLVPPLIISEQE 445 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~~-----~----------~~~~~~~l~-~~Gv~v~~~~----------~~~~lRi~~~~~~t~e~ 445 (465)
....+..|.++++.+.. . ..+++..|+ ++||.+.++. ..+++||++. .++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~ 407 (422)
T 3fvs_A 330 KPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEAT 407 (422)
T ss_dssp EEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHH
T ss_pred eecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec--CCHHH
Confidence 33445667788887721 1 447788766 4799998743 1378999755 49999
Q ss_pred HHHHHHHHHHHHHH
Q 012368 446 LDQAVEILCKTLPV 459 (465)
Q Consensus 446 i~~~l~~l~~~l~~ 459 (465)
|++++++|++++++
T Consensus 408 i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 408 LQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=264.94 Aligned_cols=330 Identities=15% Similarity=0.100 Sum_probs=230.3
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~a 171 (465)
.+|||.++.+ .+| .+|.+.+++.++++.....+. .+..+.++++++++.+.++ .+ +|++++||++|+..+
T Consensus 31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 4788988865 466 689999999999875211111 1123345666666655444 56 899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
++.+. .++++|++.+|+||++...+...+.... . .+...+. + ..|+++|++++++ ++++|+
T Consensus 108 ~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~-~--~~d~~~l~~~l~~-~~~~v~ 168 (386)
T 1u08_A 108 ITALV-----------RNGDEVICFDPSYDSYAPAIALSGGIVK-R---MALQPPH-F--RVDWQEFAALLSE-RTRLVI 168 (386)
T ss_dssp HHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-E---EECCTTT-C--CCCHHHHHHHCCT-TEEEEE
T ss_pred HHHhC-----------CCCCEEEEeCCCchhHHHHHHHcCCEEE-E---eecCccc-C--cCCHHHHHHhhcc-cCEEEE
Confidence 99764 1578999999999987754433322111 0 0111100 0 1389999999974 566666
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc----cccc-ccCCcccEEEecccCC-Cccceee
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHE-HYGIFPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~----~~~~-~~~~~pdi~t~sK~lg-~G~~iG~ 325 (465)
++..++.+|.+ ++.+++++|.++|++||+++|+||+|++|.+.|.. .... ..+..+.+.++||.++ .|+|+||
T Consensus 169 l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 247 (386)
T 1u08_A 169 LNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 247 (386)
T ss_dssp EESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred EeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEE
Confidence 65545555654 57889999999999999999999999998665531 1221 2455666778999999 6899999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEE
Q 012368 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~ 405 (465)
+++++++++.+.......+++.++++++++.++|+.. +++.+++++.....++.+.+.+.+++.....+..|.++++.
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~ 325 (386)
T 1u08_A 248 CVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVD 325 (386)
T ss_dssp EECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEE
T ss_pred EEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEEEe
Confidence 9999999888765444457788899999999999864 34455555555555566665555554322223346788888
Q ss_pred ec----CChHHHHHHHH-HCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 406 FD----VSATPVVDACR-DSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 406 ~~----~~~~~~~~~l~-~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
++ .+..++.+.|+ ++||.+.++. ..+++||+++ .++++|++++++|++
T Consensus 326 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 326 YSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp CTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 84 25678888887 6899998752 2368999876 489999999998864
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=265.29 Aligned_cols=322 Identities=15% Similarity=0.125 Sum_probs=226.3
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHH
Q 012368 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al 172 (465)
.+|+.+|||.++.. +++ .+|+|++++.+++.+.......|+.....+++++++++++ .++|++|+||++|+..++
T Consensus 23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 47789999999865 455 7899999999998763211223333335688888888887 789999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC---CHHHHHhhcCCCCeEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG---NIEATRKLIQPGKTAA 249 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~a~ 249 (465)
+.+. .++++|++.+|+|+++...+...+... ..+|.+ +++++++.++ ...+
T Consensus 100 ~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~l~~~~~--~~~v 153 (360)
T 3hdo_A 100 RAFA-----------AEGEEIGYVHPSYSYYGTLAEVQGARV-------------RTFGLTGDFRIAGFPERYE--GKVF 153 (360)
T ss_dssp HHHC-----------CTTCEEEEESSSCTHHHHHHHHHTCEE-------------EEECBCTTSSBTTCCSSBC--SSEE
T ss_pred HHHh-----------CCCCEEEEcCCChHHHHHHHHHCCCEE-------------EEeeCCCCCCHHHHHhhcC--CCEE
Confidence 9664 168899999999998876554443221 122221 1223333232 2244
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEe
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALV 328 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~ 328 (465)
++++| ++++|.+.+ +++|.++|+++|++||+||+|++|...+.....+..+..+.+.++||.++ +|+|+||+++
T Consensus 154 ~i~~p-~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 228 (360)
T 3hdo_A 154 FLTTP-NAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIA 228 (360)
T ss_dssp EEESS-CTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEEC
T ss_pred EEeCC-CCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEee
Confidence 44555 444565555 67889999999999999999998743322222233455566778999998 6899999999
Q ss_pred CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-
Q 012368 329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD- 407 (465)
Q Consensus 329 ~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~- 407 (465)
++++++.+... ..+++.|+++++++.++|+. .++.++.++.....++.+.+.+.+++ +...++.|.++++.++
T Consensus 229 ~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~ 302 (360)
T 3hdo_A 229 RPEVIAALDKI--RDHYNLDRLAQAACVAALRD---QAYLSECCRRIRETREWFTTELRSIG-YDVIPSQGNYLFATPPD 302 (360)
T ss_dssp CHHHHHHHHHH--SCSCCSCHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTT-CEECCCSSSEEEEECTT
T ss_pred CHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHCC-CEEcCCCccEEEEECCC
Confidence 99999888643 24578999999999999984 33344444444444444444444443 3445677888888874
Q ss_pred CChHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 408 VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 408 ~~~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+..++.+.|.++||.+.+++. ++++|++++ +++|+++++++|+++.+.
T Consensus 303 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 303 RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 4678899999999999987642 478999865 899999999999877543
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=263.88 Aligned_cols=322 Identities=15% Similarity=0.119 Sum_probs=224.7
Q ss_pred EecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhh------cC--CCeEEecCCHHHHHHHHH
Q 012368 101 LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVAC------SF--ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 101 lD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~------~~--~~~v~~~~sG~eA~~~al 172 (465)
|||.++.+ ++| .+|++.+++.+++++.......|+.....++++.++++ .+ .++|++++|+++|+..++
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 89998865 566 78999999999987631111222222223555555554 33 578999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ 252 (465)
+.+.. ++++|++.+|+||++...+...+...... +...+. ..|++++++++++.++++|++
T Consensus 110 ~~l~~-----------~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v----~~~~~~----~~d~~~l~~~i~~~~~~~v~~ 170 (369)
T 3cq5_A 110 QAFGG-----------PGRTALGFQPSYSMHPILAKGTHTEFIAV----SRGADF----RIDMDVALEEIRAKQPDIVFV 170 (369)
T ss_dssp HHHCS-----------TTCEEEEEESSCTHHHHHHHHTTCEEEEE----ECCTTS----SCCHHHHHHHHHHHCCSEEEE
T ss_pred HHhcC-----------CCCEEEEcCCChHHHHHHHHHcCCEEEEe----cCCcCC----CCCHHHHHHHhhccCCCEEEE
Confidence 87641 57899999999998876544333221110 111110 127899999886424567777
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-cccC-CcccEEEecccCC-CccceeeEEeC
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYG-IFPDIMTLAKPLA-GGLPIGAALVT 329 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~~~~-~~pdi~t~sK~lg-~G~~iG~v~~~ 329 (465)
++.++++|.+. + ++++.++|+.+++++|+||+|+++++....... +.++ ..+++.++||+++ +|+|+|+++++
T Consensus 171 ~~~~nptG~~~-~---~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVT-S---LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCC-C---HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCC-C---HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 66666667665 4 566666777777999999999988643222221 3334 4566778999998 68999999999
Q ss_pred HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC
Q 012368 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~ 408 (465)
+++++.+... ..+|+.|+++++++.++|+..+ -++..++++++.+++.+.|++. + +...++.|.++++.++.
T Consensus 247 ~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~~~~~~ 319 (369)
T 3cq5_A 247 PAFIDAVMLV--RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----G-YAVVPSESNFVFFGDFS 319 (369)
T ss_dssp THHHHHHHTT--SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----T-CEEECCSSSEEEEECCS
T ss_pred HHHHHHHHHc--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----C-CEECCCCCeEEEEECCC
Confidence 9998888743 3457789999999999998421 1334455556666666666552 2 33346678888888755
Q ss_pred ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 409 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+..++.+.|.++||.+.+++.++++|++++ +++|+++++++|++++.
T Consensus 320 ~~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 320 DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp SHHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 677899999999999988744478999876 78999999999998763
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=265.34 Aligned_cols=329 Identities=14% Similarity=0.108 Sum_probs=229.0
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|++++||.++.+ .++ .+|.+++++ ++++.....+. .+..+.++++++++.+.++ .++|++|+||++|+.
T Consensus 41 ~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~ 116 (409)
T 2gb3_A 41 RGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL 116 (409)
T ss_dssp TTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHH
Confidence 5788999998876 456 578999999 88865321111 1123345666666655443 478999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----C-HHHHHhhcC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----N-IEATRKLIQ 243 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~ 243 (465)
.+++.+. .++++|++.+|+||++...+...+.. +..+|.+ + +++|+++++
T Consensus 117 ~~~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~~~~l~~~l~ 172 (409)
T 2gb3_A 117 FSFAVIA-----------NPGDEILVLEPFYANYNAFAKIAGVK-------------LIPVTRRMEEGFAIPQNLESFIN 172 (409)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHHTCE-------------EEEEECCGGGTSCCCTTGGGGCC
T ss_pred HHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHcCCE-------------EEEeccCCCCCCccHHHHHHhhC
Confidence 9999764 15889999999999887644333221 1222221 1 678888887
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC-cccEE--EecccCC-C
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLA-G 319 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~--t~sK~lg-~ 319 (465)
+ ++++|++++.++.+|.+ ++.+++++|.++|++||++||+||+|+++.+.|..... ..++ ..|++ ++||.++ +
T Consensus 173 ~-~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 173 E-RTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp T-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCG
T ss_pred c-CCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCc
Confidence 5 56666666555555654 57899999999999999999999999988665543222 1122 23544 7899998 5
Q ss_pred ccceeeEEeCH-HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHcCCCce-ee
Q 012368 320 GLPIGAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--NPAFLASVSKKGHYFKETLKQKLARNPHVK-DV 395 (465)
Q Consensus 320 G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~ 395 (465)
|+|+|++++++ ++++.+.......+ +.++++++++.++|+... .+.+.++++++.+++.+.|++ ++... ..
T Consensus 250 G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~ 324 (409)
T 2gb3_A 250 GARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE----HGLKRFTK 324 (409)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH----TTCCCBCC
T ss_pred cceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH----cCceeeeC
Confidence 89999999998 88887764333444 788999999998886421 122344445555555555544 33211 12
Q ss_pred eccceEEEEEec-CChHHHHHHHHHC------CceEeecC--------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 396 RGLGLIIGIEFD-VSATPVVDACRDS------GLLVLTAG--------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 396 ~~~g~~~~i~~~-~~~~~~~~~l~~~------Gv~v~~~~--------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+..|.++++.+. .+..++.+.|+++ ||.+.++. .++++|++++ ++++++++++++|+++++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 325 PSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp CSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 334677777773 4677899999987 99998752 1378999877 79999999999999999887
Q ss_pred hh
Q 012368 461 DS 462 (465)
Q Consensus 461 ~~ 462 (465)
++
T Consensus 403 ~~ 404 (409)
T 2gb3_A 403 CS 404 (409)
T ss_dssp HC
T ss_pred hh
Confidence 64
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=266.35 Aligned_cols=339 Identities=17% Similarity=0.061 Sum_probs=231.8
Q ss_pred CCCEEEecccCcccc-cCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012368 96 EGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 96 dG~~ylD~~~~~~~~-~lGh~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
+|++++||..+.+.. .++ .+|.+.+++.+++......+.. +..+.+.++++++.+.++ .++|++|+||++|+
T Consensus 36 ~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al 114 (406)
T 1xi9_A 36 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEAL 114 (406)
T ss_dssp TTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred cCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHH
Confidence 678899999887632 456 5799999999988753211111 122346666666655433 57999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC--CceEeeCCCHHHHHhhcCCCC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~~ 246 (465)
..+++.+. .++++|++.+|+||++...+...+..... .+... +.. .|+++|++++++ +
T Consensus 115 ~~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~~~----~d~~~l~~~l~~-~ 174 (406)
T 1xi9_A 115 QLIFGALL-----------DPGDEILVPGPSYPPYTGLVKFYGGKPVE----YRTIEEEDWQ----PDIDDIRKKITD-R 174 (406)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTTCEEEE----EEEEGGGTSE----ECHHHHHHHCCT-T
T ss_pred HHHHHHhC-----------CCCCEEEEcCCCCccHHHHHHHcCCEEEE----eecCCCcCCc----CCHHHHHHhhCc-C
Confidence 99999764 15889999999999987554333221110 01100 001 189999999975 4
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcc-cE--EEecccCC-Cccc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP-DI--MTLAKPLA-GGLP 322 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~p-di--~t~sK~lg-~G~~ 322 (465)
+++|++++.++++|.+ ++++++++|.++|++||++||+||+|+++.+.+.......++... ++ .++||.++ +|+|
T Consensus 175 ~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 253 (406)
T 1xi9_A 175 TKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWR 253 (406)
T ss_dssp EEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGC
T ss_pred ceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccE
Confidence 6666666555555654 578999999999999999999999999886633332333332111 33 36899998 5899
Q ss_pred eeeEE--eCH----HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 323 IGAAL--VTE----KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 323 iG~v~--~~~----~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
+|+++ +++ ++++.+....... ++.|+++++++.++|+.. .+..+++++.....++.+.+.+.++|.+....
T Consensus 254 ~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 330 (406)
T 1xi9_A 254 LGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGP--MDYLKEYMKKLKERRDYIYKRLNEIPGISTTK 330 (406)
T ss_dssp CEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC
T ss_pred EEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeec
Confidence 99999 898 8888776432223 678889999999999743 22244444444444455555555554443333
Q ss_pred cc-ceEEEEEec----CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 397 GL-GLIIGIEFD----VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 397 ~~-g~~~~i~~~----~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+. |.++++.++ .+..++.+.|+ ++||.+.++.. .+++||+++ ++++++++++++|+++++++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 331 PQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp CCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC-
T ss_pred CCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence 43 555666664 35678999987 89999987631 368999987 799999999999999998754
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=271.86 Aligned_cols=340 Identities=17% Similarity=0.090 Sum_probs=225.0
Q ss_pred EEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc----------cCCCCCHHHHHHHHHHHhhcC-------
Q 012368 92 LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----------SNMYYSIPQIELAKRLVACSF------- 154 (465)
Q Consensus 92 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~----------~~~~~~~~~~~la~~l~~~~~------- 154 (465)
.||.++|.+.++..+...++++ +|.+.+++.++.....+. ..+.......+|++.|+++++
T Consensus 30 ~y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~ 107 (435)
T 3piu_A 30 PYHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 107 (435)
T ss_dssp BCBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence 3778888776666666666665 678888887765432211 011111112344444444433
Q ss_pred ---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee
Q 012368 155 ---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231 (465)
Q Consensus 155 ---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (465)
.++|++++||++|+..++++++. +++.|++.+|+|+++........+.. +..++
T Consensus 108 ~~~~~~v~~~~gg~~a~~~~~~~l~~-----------~gd~vl~~~p~~~~~~~~~~~~~g~~------------~~~~~ 164 (435)
T 3piu_A 108 TFDPNHLVLTAGATSANETFIFCLAD-----------PGEAVLIPTPYYPGFDRDLKWRTGVE------------IVPIH 164 (435)
T ss_dssp CCCGGGEEEEEHHHHHHHHHHHHHCC-----------TTCEEEEEESCCTTHHHHTTTTTCCE------------EEEEE
T ss_pred CCCHHHEEEcCChHHHHHHHHHHhcC-----------CCCeEEECCCccccHHHHHHHhcCCE------------EEEee
Confidence 78999999999999999997652 68899999999988765443222211 12222
Q ss_pred C-------CCHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 232 Y-------GNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 232 ~-------~d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+ .|+++|++++++ .++++|++++.++++|. +++.+.+++|+++|++||++||+||+|+++++.|..+
T Consensus 165 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 243 (435)
T 3piu_A 165 CTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243 (435)
T ss_dssp CCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred CCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence 2 188999999863 25666665554455554 4578889999999999999999999999876666432
Q ss_pred c-ccccC----Cc-----cc----EEEecccCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc
Q 012368 300 A-HEHYG----IF-----PD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS 363 (465)
Q Consensus 300 ~-~~~~~----~~-----pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~ 363 (465)
. ..... +. +| +.++||++| +|+|+||+++ ++++++.+. ....++..++++++++.++|+...
T Consensus 244 ~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~ 321 (435)
T 3piu_A 244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT--KMSSFGLVSSQTQHLLSAMLSDKK 321 (435)
T ss_dssp CCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHH--HHGGGSCCCHHHHHHHHHHHHCHH
T ss_pred cCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHH--HHhhcCCCCHHHHHHHHHHhcChH
Confidence 1 11111 11 23 568999998 6999999999 567777665 233455678889988888887322
Q ss_pred C-chHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEEecC--------ChHHHHHHHHHC-CceEeecC----
Q 012368 364 N-PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIEFDV--------SATPVVDACRDS-GLLVLTAG---- 428 (465)
Q Consensus 364 ~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~~~---- 428 (465)
. ++..++.++.....++.+.+.+.+.+. ...++. |.++++.++. ...++.+.|+++ ||++.++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 400 (435)
T 3piu_A 322 LTKNYIAENHKRLKQRQKKLVSGLQKSGI-SCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC 400 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence 1 122233333333444444444444443 333444 4888888842 345788888887 99998752
Q ss_pred -CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 429 -KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 429 -~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..+++||+++.. +++++++++++|+++++++.
T Consensus 401 ~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 401 TEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 147899998655 99999999999999998765
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-31 Score=260.70 Aligned_cols=325 Identities=14% Similarity=0.101 Sum_probs=217.7
Q ss_pred EeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecC
Q 012368 85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSN 162 (465)
Q Consensus 85 ~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~ 162 (465)
.+++|.++++.+|+++|||.++.. +++ .+|++++++.+++.... .|+.....+++++++++++ .++|++|+
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTVW--TDG-DKDHLEKHLVENLNCIR----HYPEPDAGTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp --------------CCEECSCCSC--CCS-CCHHHHHHHHHTGGGGG----SCCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred cccccchHhhhccccEEEccCCCC--CCC-CCHHHHHHHHHhHhHHh----cCCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence 468899999999999999999865 556 78999999998874322 2333333688999999887 57999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhh
Q 012368 163 TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKL 241 (465)
Q Consensus 163 sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~ 241 (465)
||++|+..+++++. +++|++.+|+|+++...+...+. .+..+|. ++.+.+
T Consensus 75 g~~~al~~~~~~l~-------------gd~Vi~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~--- 125 (350)
T 3fkd_A 75 GPTAAFYQIAQAFR-------------GSRSLIAIPSFAEYEDACRMYEH-------------EVCFYPSNEDIGEA--- 125 (350)
T ss_dssp HHHHHHHHHHHHTT-------------TCEEEEEESCCHHHHHHHHHTTC-------------EEEEEETTSCGGGS---
T ss_pred CHHHHHHHHHHHHC-------------CCEEEEeCCCcHHHHHHHHHcCC-------------eEEEEecCCccccC---
Confidence 99999999998664 57899999999988754433321 2333444 222221
Q ss_pred cCCCCeEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc--cccccCCcccEEEecccCC
Q 012368 242 IQPGKTAA-VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHEHYGIFPDIMTLAKPLA 318 (465)
Q Consensus 242 l~~~~~a~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~--~~~~~~~~pdi~t~sK~lg 318 (465)
...++++ +++.|.|++ |.+ .+.+.+++|.++|+++ +||+||+|.+|++.+... ..+..+....+.++||.++
T Consensus 126 -~~~~~~~v~i~~p~npt-G~~-~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 200 (350)
T 3fkd_A 126 -DFSNMDFCWLCNPNNPD-GRL-LQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYG 200 (350)
T ss_dssp -CCTTCSEEEEESSCTTT-CCC-CCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHS
T ss_pred -ccCCCCEEEEeCCCCCc-CCC-CCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhcc
Confidence 1123444 445554444 443 4666677777777655 999999999887665422 2222333455668999999
Q ss_pred -CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 319 -GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 319 -~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
.|+|+||+++++++++.+... ..+++.++++++++.++|+... -.+..++..++.+++.+.| .++|.+...+
T Consensus 201 ~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~~~ 274 (350)
T 3fkd_A 201 IPGLRIGYIVANKDFMKRVAAF--STPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITAL----NRLDGVEVHP 274 (350)
T ss_dssp CGGGCCEEEECCHHHHHHHHTT--CCTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHH----HHSTTEEECC
T ss_pred CcchheEeEEeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH----hcCCCcEECC
Confidence 689999999999999988743 3467889999999999998543 1122222334444544444 4455555566
Q ss_pred ccceEEEEEecC-ChHHHHHHHHH-CCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 397 GLGLIIGIEFDV-SATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 397 ~~g~~~~i~~~~-~~~~~~~~l~~-~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.|.++++.++. +..++.+.|.+ +||.+.++.. ++++||+++ +++++++++++|++++++
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 275 SGTTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp CSSSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 778888888853 67889999998 9999988631 478999855 788899999999887654
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-31 Score=266.56 Aligned_cols=334 Identities=16% Similarity=0.109 Sum_probs=227.5
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAAI 172 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~al 172 (465)
+|||.++.. .++ .+|.+.+++.+++++....+. .+..+.++++++++.+.++ .+ +|++|+||++|+..++
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 689988865 466 689999999999876211111 1123346666666665544 45 8999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
+.+. .++++|++.+|+||++...+...+.... . .+.... ..+ ..|+++|++++++ ++++|+
T Consensus 104 ~~~~-----------~~gd~Vl~~~~~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~--~~d~~~l~~~l~~-~~~~v~ 165 (411)
T 2o0r_A 104 LGLV-----------EPGSEVLLIEPFYDSYSPVVAMAGAHRV-T---VPLVPDGRGF--ALDADALRRAVTP-RTRALI 165 (411)
T ss_dssp HHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-E---EECEEETTEE--ECCHHHHHHHCCT-TEEEEE
T ss_pred HHhc-----------CCCCEEEEeCCCcHhHHHHHHHcCCEEE-E---eeccccccCC--CCCHHHHHHhhcc-CceEEE
Confidence 8764 1578999999999997654433222111 0 011100 000 0389999999975 566776
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc----cCCcccEEEecccCC-Cccceee
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH----YGIFPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~----~~~~pdi~t~sK~lg-~G~~iG~ 325 (465)
+++.++++|.+ ++.+++++|+++|++||++||+||+|+++.+.|.. ..... .+..+.+.++||.++ .|+|+|+
T Consensus 166 l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 244 (411)
T 2o0r_A 166 INSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGW 244 (411)
T ss_dssp EESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEE
T ss_pred EeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEE
Confidence 66555556654 57899999999999999999999999988766532 12211 233455668999998 6899999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEE
Q 012368 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~ 403 (465)
+++++++++.+.......+++.++++++++.++|+...+ ++..++++++.+++.+.|++. +.....+..|.+++
T Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~ 320 (411)
T 2o0r_A 245 ACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYGTYFLC 320 (411)
T ss_dssp EECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCBSSEEE
T ss_pred EeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCeeEEEE
Confidence 999999988876544445677788889999999975411 233444555555555555543 32212233466888
Q ss_pred EEec----CChHHHHHHHH-HCCceEeecC----------------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 404 IEFD----VSATPVVDACR-DSGLLVLTAG----------------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 404 i~~~----~~~~~~~~~l~-~~Gv~v~~~~----------------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.+. .+..++.+.|+ ++||.+.++. ..+++||++. .+++++++++++|++++++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 321 ADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp EECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC---
T ss_pred EecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhccC
Confidence 8884 24678888887 6799998741 1257999875 489999999999998776544
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=261.28 Aligned_cols=337 Identities=14% Similarity=0.088 Sum_probs=232.6
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhccc-ccC--CCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VSN--MYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANE 169 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~--~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~eA~~ 169 (465)
..+|||..+.. .++ .+|.|++++.+++..... .+. .+..+.++++++++.+.++ . ++|++++||++|+.
T Consensus 23 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 45788888764 344 679999999999875311 111 1123446666666665543 4 79999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CCC-----ceEeeCCCHHHHHhhcC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPG-----VNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~d~~~le~~l~ 243 (465)
.+++.+. .++++|++.+|+|+++...+...+...... +..+. ..+ ..+. -|+++++++++
T Consensus 100 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~g~~~~~~~~~--~d~~~l~~~~~ 165 (410)
T 3e2y_A 100 NSIQGLV-----------DPGDEVIIMVPFYDCYEPMVRMAGAVPVFI-PLRSKPTDGMKWTSSDWT--FDPRELESKFS 165 (410)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECEECCCCSSCCBGGGEE--CCHHHHHTTCC
T ss_pred HHHHHhc-----------CCCCEEEEeCCCchhhHHHHHHcCCEEEEE-eccccccccccccccCCc--CCHHHHHhhcC
Confidence 9999764 168899999999998876544433221111 00000 000 0000 28999999997
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccccc----CCcccEEEecccCC
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY----GIFPDIMTLAKPLA 318 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~----~~~pdi~t~sK~lg 318 (465)
+ ++++|++++.++++|.+ ++++.+++|+++|++||++||+||+|++|.+.|.. ...... +...++.++||.++
T Consensus 166 ~-~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g 243 (410)
T 3e2y_A 166 S-KTKAIILNTPHNPLGKV-YTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFS 243 (410)
T ss_dssp T-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSS
T ss_pred C-CceEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcC
Confidence 5 56777776655556654 58888999999999999999999999998776642 122222 23355668999999
Q ss_pred -CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-----hcCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 319 -GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 319 -~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
+|+|+||+++++++++.+.......+++.++++++++.++|+. ...+++.+++++.....++.+.+.+.+++..
T Consensus 244 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 323 (410)
T 3e2y_A 244 VTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLK 323 (410)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 6999999999999998886555567888999999999999984 1224455666666666666666666666544
Q ss_pred eeeeccceEEEEEecC-----C--------hHHHHHHHH-HCCceEeecCC----------CCEEEEecCCCCcHHHHHH
Q 012368 393 KDVRGLGLIIGIEFDV-----S--------ATPVVDACR-DSGLLVLTAGK----------GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 393 ~~~~~~g~~~~i~~~~-----~--------~~~~~~~l~-~~Gv~v~~~~~----------~~~lRi~~~~~~t~e~i~~ 448 (465)
...+..|.++++++.. + ..+++..|+ ++||.+.++.. .+++||++ ..+++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~--~~~~e~l~~ 401 (410)
T 3e2y_A 324 PIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCF--IKKDSTLDA 401 (410)
T ss_dssp EEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEEC--CCCHHHHHH
T ss_pred ecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEE--cCCHHHHHH
Confidence 3455667888887731 1 136777665 67999987531 26899975 459999999
Q ss_pred HHHHHHH
Q 012368 449 AVEILCK 455 (465)
Q Consensus 449 ~l~~l~~ 455 (465)
++++|++
T Consensus 402 ~l~~l~~ 408 (410)
T 3e2y_A 402 AEEIFRA 408 (410)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.6e-31 Score=259.80 Aligned_cols=321 Identities=17% Similarity=0.154 Sum_probs=229.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
+.+|||.++.. +++ .+|.|++++.+++.... .|+.....+++++++++++ .++|++++||++|+..+++.+
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l 102 (365)
T 3get_A 30 KEVIKLASNEN--PFG-TPPKAIECLRQNANKAH----LYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK 102 (365)
T ss_dssp SCCEECSSCCC--TTC-SCHHHHHHHHHHGGGTT----SCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEecCCCC--CCC-CCHHHHHHHHHHHHhhc----cCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence 67899998855 466 78999999999887532 2333333688888888887 679999999999999999876
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CCCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
. .++++|++.+|+|+++...+...+...... +. ..+. .|+++|++++++ ++++|+++.
T Consensus 103 ~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v----~~~~~~~-----~d~~~l~~~l~~-~~~~v~~~~ 161 (365)
T 3get_A 103 L-----------NSKNAFLQAGVTFAMYEIYAKQCGAKCYKT----QSITHNL-----DEFKKLYETHKD-EIKLIFLCL 161 (365)
T ss_dssp C-----------CTTCEEEECSSCCTHHHHHHHHHTCEEEEC----SSSSCCH-----HHHHHHHHHTTT-TEEEEEEES
T ss_pred h-----------CCCCEEEEeCCChHHHHHHHHHcCCEEEEE----ecCCCCC-----CCHHHHHHHhCC-CCCEEEEcC
Confidence 4 168999999999998876554443322211 11 1111 278999999974 566666543
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC--CC-cc-cc---ccccCCcccEEEecccCC-CccceeeE
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR--TG-YL-WA---HEHYGIFPDIMTLAKPLA-GGLPIGAA 326 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr--~g-~~-~~---~~~~~~~pdi~t~sK~lg-~G~~iG~v 326 (465)
.++.+|.+ .+.+.+++|+++| ++|+++|+||+|.++.+ .+ .. .. .+..+....+.++||.++ .|+|+|++
T Consensus 162 p~nptG~~-~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 239 (365)
T 3get_A 162 PNNPLGEC-LDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYG 239 (365)
T ss_dssp SCTTTCCC-CCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEE
T ss_pred CCCCCCCC-cCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEE
Confidence 33444443 4777788888888 57999999999997642 22 11 11 122344455668999998 68999999
Q ss_pred EeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe
Q 012368 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~ 406 (465)
++++++++.+... ..+++.|+++++++.++|+. .+..++.++.....++.+.+.+.+++ +...++.|.++++.+
T Consensus 240 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~~~~~~~~ 313 (365)
T 3get_A 240 IANANIISAFYKL--RAPFNVSNLALKAAVAAMDD---DEFTEKTLENNFSQMELYKEFAKKHN-IKIIDSYTNFITYFF 313 (365)
T ss_dssp EECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHTT-CEECCCSSSEEEEEC
T ss_pred EcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCCCCeEEEEEC
Confidence 9999999888642 23467899999999998873 34444455544445555555554443 344567788888888
Q ss_pred cC-ChHHHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 407 DV-SATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 407 ~~-~~~~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+. +..++.+.|.++||.+.++.. .+++|++++ +++++++++++|++++
T Consensus 314 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 314 DEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp SSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 54 778899999999999988642 378999865 8999999999998876
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=255.58 Aligned_cols=311 Identities=17% Similarity=0.165 Sum_probs=226.8
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 012368 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197 (465)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~ 197 (465)
+++.+++..... .+++.....++++.+++++. .++|++++||++|+..+++.+. .++++|++.+
T Consensus 46 ~~~~~~~~~~~~--~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-----------~~gd~Vl~~~ 112 (375)
T 3op7_A 46 EDFYKKLQGTKL--NYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-----------EPGDHVISLY 112 (375)
T ss_dssp HHHHHHHHTSCC--SSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-----------CTTCEEEEEE
T ss_pred HHHHHHHhcCCc--CCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-----------CCCCEEEEeC
Confidence 455555544322 22233335688888888763 6899999999999999999764 2689999999
Q ss_pred CCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-------CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-------NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 198 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
|+|++....+...+.. +..+|.+ |+++|++++++ ++++|++++.++++|. +++.++++
T Consensus 113 ~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~-~~~~~~l~ 177 (375)
T 3op7_A 113 PTYQQLYDIPKSLGAE-------------VDLWQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGA-VMDRTYLE 177 (375)
T ss_dssp SSCTHHHHHHHHTTCE-------------EEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCC-CCCHHHHH
T ss_pred CCchhHHHHHHHcCCE-------------EEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCC-CCCHHHHH
Confidence 9999876554333221 1122211 89999999975 5667777766666665 45889999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChH
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSP 349 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~ 349 (465)
+|.++|++||++||+||+|+++++.+.....+.++..+++.+|||.++ +|+|+|++++++++++.+.......+++.++
T Consensus 178 ~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~ 257 (375)
T 3op7_A 178 ELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGV 257 (375)
T ss_dssp HHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCH
T ss_pred HHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCc
Confidence 999999999999999999999876543334455667788889999998 6899999999999999998766777888899
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEEe--cCChHHHHHHHH-HCCceEe
Q 012368 350 LVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIEF--DVSATPVVDACR-DSGLLVL 425 (465)
Q Consensus 350 ~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~~--~~~~~~~~~~l~-~~Gv~v~ 425 (465)
++++++.++|+.. +.+.++.++.....++.+.+.+.+++.+..+.+. |.+.++.+ ..+..++++.|+ ++||.+.
T Consensus 258 ~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 335 (375)
T 3op7_A 258 FDDLVAQLALAHY--QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLV 335 (375)
T ss_dssp HHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEe
Confidence 9999999888742 3445555555555566666666666655444433 44556665 345678888885 7899998
Q ss_pred ecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 426 TAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 426 ~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
++.. .+++|+++ ..+.+++++++++|.++++++.++
T Consensus 336 ~g~~~~~~~~iRi~~--~~~~~~i~~~l~~l~~~l~~~~~~ 374 (375)
T 3op7_A 336 PGNRFERDGYVRLGF--ACEQETLIKGLEKLSQFLRRFDKE 374 (375)
T ss_dssp EGGGGTCTTEEEECC--CSCHHHHHHHHHHHHHHHGGGC--
T ss_pred ChhhhCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHHhhc
Confidence 8642 47888865 456689999999999999887643
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=257.11 Aligned_cols=315 Identities=15% Similarity=0.137 Sum_probs=218.9
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
+++|||.+|. +++|++ |.+ + +.. ...|++....++++.++++++ .++|++++|++||+..+++.+
T Consensus 29 ~~~i~l~~~~--~~~~~~-~~v--a----~~~----~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~ 95 (356)
T 1fg7_A 29 NGDVWLNANE--YPTAVE-FQL--T----QQT----LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF 95 (356)
T ss_dssp TCSEECSSCC--CSSCCC-CCC--C----CCC----TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred CceEEeeCCC--CCCCCC-HhH--h----hhh----hccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH
Confidence 5689999985 478874 555 2 221 123444335688888888887 579999999999999999976
Q ss_pred HHHhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012368 176 RKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
.. ++ ++|++.+|+||++...+...+...... +...+.. .|+++++++++ ++++|+++.
T Consensus 96 ~~-----------~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~~~----~d~~~l~~~i~--~~~~v~l~~ 154 (356)
T 1fg7_A 96 CE-----------PGKDAILYCPPTYGMYSVSAETIGVECRTV----PTLDNWQ----LDLQGISDKLD--GVKVVYVCS 154 (356)
T ss_dssp CC-----------TTTCEEEECSSSCTHHHHHHHHHTCEEEEC----CCCTTSC----CCHHHHHTSCT--TEEEEEEES
T ss_pred hC-----------CCCCEEEEeCCChHHHHHHHHHcCCEEEEe----eCCCCCC----CCHHHHHHHhc--CCCEEEEeC
Confidence 41 46 899999999999886655443322111 2111111 28999999986 455555544
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-cccCCcccEEEecccCC-CccceeeEEeCHHH
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYGIFPDIMTLAKPLA-GGLPIGAALVTEKV 332 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i 332 (465)
.++++|.+ .+.+++++|.++|+ +|+++|+||+|++|+........ +.++....+.++||.+| +|+|+||+++++++
T Consensus 155 p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 232 (356)
T 1fg7_A 155 PNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEV 232 (356)
T ss_dssp SCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH
T ss_pred CCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHH
Confidence 44445544 57899999999999 99999999999988632222222 22344455668999998 69999999999999
Q ss_pred HhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC-ceeeeccceEEEEEecCChH
Q 012368 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 333 ~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~i~~~~~~~ 411 (465)
++.+... ..+|+.|+++++++.++|+.... +..++.++.....++.|.+.+.+++. ....++.|+++++.++ +..
T Consensus 233 ~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (356)
T 1fg7_A 233 INLLMKV--IAPYPLSTPVADIAAQALSPQGI-VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-ASS 308 (356)
T ss_dssp HHHHHHH--SCSSCSCHHHHHHHHHHTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-THH
T ss_pred HHHHHHh--cCCCCCCHHHHHHHHHHhcCccH-HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-CHH
Confidence 8888632 34567899999999888864211 11444444444444455444445553 2334567888888885 677
Q ss_pred HHHHHHHHCCceEee-cCC---CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLT-AGK---GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~-~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
++.+.|.++||.+.+ +.. ++++|++++ +++|+++++++|++
T Consensus 309 ~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 309 AVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp HHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 899999999999998 421 368999865 68999999998875
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=265.16 Aligned_cols=341 Identities=13% Similarity=0.058 Sum_probs=225.2
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc--cccCCCC-CHHHHHHHHHHHhhc----C--CCeEEecCCHH
Q 012368 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSNMYY-SIPQIELAKRLVACS----F--ADRVFFSNTGT 165 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~--~~~~~~~-~~~~~~la~~l~~~~----~--~~~v~~~~sG~ 165 (465)
.+|+++|||.++.. .++ .+|.|++|+.+++.+.. .....|. .....+|++.+++++ + .++|++++|++
T Consensus 66 ~~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGDT--TEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCCC--CCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCCC--CCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 36889999999864 343 68999999999988532 1112232 223456777777665 3 67999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP- 244 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~- 244 (465)
+++..+ ..+. .+++.|++.+|+|+++...+...+....+.. ....++..+|.++.+.+...+..
T Consensus 143 ~al~~~-~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 207 (449)
T 3qgu_A 143 CDIARI-QMMF-----------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG---TGFDGIEYMVCNPDNHFFPDLSKA 207 (449)
T ss_dssp HHHHHH-HHHH-----------CSSSCEEEEESCCTHHHHHHHHHTCSCCBCS---SSBTTEEEEECCGGGTTCCCGGGC
T ss_pred HHHHHH-HHHh-----------CCCCEEEEcCCCChhHHHHHHHcCCcccccc---cccceeEEEecccccCCcCChhHc
Confidence 999987 4333 1688999999999998876655443211110 00012344554432222111111
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccc----cCCcccEEEecccCC-
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEH----YGIFPDIMTLAKPLA- 318 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~----~~~~pdi~t~sK~lg- 318 (465)
.++++|+++..++++|. +++.+++++|+++|++||++||+||+|++|++.|. ...... .+..+++.+|||++|
T Consensus 208 ~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 286 (449)
T 3qgu_A 208 KRTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGF 286 (449)
T ss_dssp CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTC
T ss_pred CCCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCC
Confidence 23445554443444444 45889999999999999999999999999876653 112222 234456778999998
Q ss_pred CccceeeEEeCHHHHhh--------ccCCCCcCCCCChHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHH
Q 012368 319 GGLPIGAALVTEKVASA--------INYGDHGSTFAGSPLVCNAAIAVLDKIS---NPAFLASVSKKGHYFKETLKQKLA 387 (465)
Q Consensus 319 ~G~~iG~v~~~~~i~~~--------~~~~~~~~t~~~~~~~~~aa~a~L~~~~---~~~~~~~~~~~~~~l~~~l~~~~~ 387 (465)
+|+|+||+++++++++. +.......+++.++++++++.++|+... .++..++++++.+++++.|++
T Consensus 287 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~--- 363 (449)
T 3qgu_A 287 TGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE--- 363 (449)
T ss_dssp TTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 69999999999887752 2222234455789999999998886421 134455555566666555554
Q ss_pred cCCCceeeeccceEEEEEec-CChHHHHHHHHHC-CceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 388 RNPHVKDVRGLGLIIGIEFD-VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 388 ~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~~-Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.....+..|.++++.++ .+..++++.|+++ ||++.|+.. .+++||+ +..+++++++++++|++++++-
T Consensus 364 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 364 -MGFSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp -TTCCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC--
T ss_pred -CCCeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHhc
Confidence 3322222334788888874 4567899888876 999987531 3789997 4569999999999999988653
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=254.49 Aligned_cols=332 Identities=17% Similarity=0.118 Sum_probs=224.9
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
|+.++||..+.+ .++ .+|.+.+++.+++......+. .+..+.++++++++.+.++ +++|++|+||++|+..
T Consensus 30 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence 456788888755 344 468899999988865322111 1223446677777765544 5789999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC--CceEeeCCCHHHHHhhcCCCCeE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~~~a 248 (465)
+++.+. .++++|++.+|+|+++...+...+..... .+..+ +.. .|+++|+++++++..+
T Consensus 107 ~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~----~d~~~l~~~l~~~~~~ 167 (385)
T 1b5p_A 107 LFQAIL-----------DPGDEVIVLSPYWVSYPEMVRFAGGVVVE----VETLPEEGFV----PDPERVRRAITPRTKA 167 (385)
T ss_dssp HHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEEE----EECCGGGTTC----CCHHHHHTTCCTTEEE
T ss_pred HHHHhc-----------CCCCEEEEcCCCchhHHHHHHHcCCEEEE----eecCcccCCC----CCHHHHHHhcCCCCEE
Confidence 998764 16889999999998876544333221111 11111 111 2789999999754334
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccccc--CCcccEEEecccCC-Cccceee
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY--GIFPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~--~~~pdi~t~sK~lg-~G~~iG~ 325 (465)
+++++|+|++|. +++.+.+++|.++|++||++||+||+|..+...|.......+ +....+.+|||.++ .|+|+||
T Consensus 168 v~~~~p~NPtG~--~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~ 245 (385)
T 1b5p_A 168 LVVNSPNNPTGA--VYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGY 245 (385)
T ss_dssp EEEESSCTTTCC--CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEE
T ss_pred EEEeCCCCCCCC--CcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEE
Confidence 555677666653 458899999999999999999999999987554421122222 22233458999998 5999999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH---hcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccce
Q 012368 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK---ISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~---~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~ 400 (465)
+++++++++.+.......+++.+++++.++.++|+. ..+ ++..++++++.+++.+.|+++ ... ...+..|.
T Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~--~~~~~~~~ 321 (385)
T 1b5p_A 246 ACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL--GLK--AVRPSGAF 321 (385)
T ss_dssp EECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCC--BCCCSBTT
T ss_pred EEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCe--ecCCCeeE
Confidence 999999988876544445677889999999888863 211 234455555566666666553 222 11223355
Q ss_pred EEEEEec---CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 401 IIGIEFD---VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 401 ~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
++++.+. .+..++.+.|.++||.+.++. ..+++||++. .+++++++++++|.++++
T Consensus 322 ~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 322 YVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp EEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred EEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 6676763 357789999999999998863 1368999865 789999999999987664
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=258.85 Aligned_cols=342 Identities=13% Similarity=0.061 Sum_probs=227.9
Q ss_pred CEEEecccCcccc-cCCCCCHHHHHHHHHHHhhccc-ccC--CCCCHHHHHHHHHHHhh----------cCCCeEEecCC
Q 012368 98 REYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTH-VSN--MYYSIPQIELAKRLVAC----------SFADRVFFSNT 163 (465)
Q Consensus 98 ~~ylD~~~~~~~~-~lGh~~p~v~~a~~~~~~~~~~-~~~--~~~~~~~~~la~~l~~~----------~~~~~v~~~~s 163 (465)
+.+|||..+.+.. .-.+.+|.+++++.+++..... .+. ....+.++++++++.+. ...++|++++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 4678998887542 1234889999999998875321 111 11223355566666521 12679999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhhc
Q 012368 164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLI 242 (465)
Q Consensus 164 G~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l 242 (465)
|++|+..+++.+. .++++|++.+|+||++...+...+..... .+..++. .+ .|+++|++++
T Consensus 113 ~~~al~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~----v~~~~~~---~~~~d~~~l~~~l 174 (416)
T 1bw0_A 113 GSHGILMAITAIC-----------DAGDYALVPQPGFPHYETVCKAYGIGMHF----YNCRPEN---DWEADLDEIRRLK 174 (416)
T ss_dssp HHHHHHHHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEEE----EEEEGGG---TTEECHHHHHHHC
T ss_pred hHHHHHHHHHHhC-----------CCCCEEEEcCCCcHhHHHHHHHcCcEEEE----eecCccc---CCCCCHHHHHHHh
Confidence 9999999999764 15789999999999987544333221110 0100000 01 2899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc----c-ccccccCC---cccEEEec
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----L-WAHEHYGI---FPDIMTLA 314 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~----~-~~~~~~~~---~pdi~t~s 314 (465)
+++..++++++|.|++ |. .++++++++|.++|++||++||+||+|+++.+.|. . .....++. ...+.++|
T Consensus 175 ~~~~~~v~i~~p~npt-G~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~s 252 (416)
T 1bw0_A 175 DDKTKLLIVTNPSNPC-GS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTA 252 (416)
T ss_dssp CTTEEEEEEESSCTTT-CC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred ccCCeEEEEeCCCCCC-Cc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecch
Confidence 7644556677775544 44 46889999999999999999999999999865554 1 12222221 22344789
Q ss_pred ccCC-CccceeeEEeCHH--HHhhccCC---CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012368 315 KPLA-GGLPIGAALVTEK--VASAINYG---DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 315 K~lg-~G~~iG~v~~~~~--i~~~~~~~---~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
|.++ +|+|+||++++++ +++.+... ....+++.|+++++++.++|+... ++.+++..+.....++.+.+.+.+
T Consensus 253 K~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 331 (416)
T 1bw0_A 253 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP-QEHLDQIVAKIEESAMYLYNHIGE 331 (416)
T ss_dssp TTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987 5899999998763 43333210 112467789999999999998532 334444445555555555555555
Q ss_pred CCCceeee-ccceEEEEEec-------CChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 389 NPHVKDVR-GLGLIIGIEFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 389 ~~~~~~~~-~~g~~~~i~~~-------~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+|.+..+. ..|.++++.++ .+..++.+.|+ ++||.+.++. .++++|+++. .+++++++++++|.++
T Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~~l~~l~~~ 409 (416)
T 1bw0_A 332 CIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYREAVERIKAF 409 (416)
T ss_dssp STTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 55444333 34777887774 35677888885 8899998863 2478999874 6899999999999999
Q ss_pred HHHhhh
Q 012368 457 LPVLDS 462 (465)
Q Consensus 457 l~~~~~ 462 (465)
+++.++
T Consensus 410 l~~~~~ 415 (416)
T 1bw0_A 410 CQRHAA 415 (416)
T ss_dssp HHHHBC
T ss_pred HHHhhc
Confidence 987654
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=252.81 Aligned_cols=328 Identities=17% Similarity=0.145 Sum_probs=232.8
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc----C-CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS----N-MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEA 170 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~----~-~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~ 170 (465)
||++|+||.++.. ..+| .+|+|.+++.+++++..... . ....+...+++++|+++++.+..+++++|++++..
T Consensus 44 ~g~~~i~~~~~~~-~~~~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~ 121 (401)
T 2bwn_A 44 GKQDITVWCGNDY-LGMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDA 121 (401)
T ss_dssp CEEEEEECSCSCT-TSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHH
T ss_pred CCCcEEEeeCCCc-ccCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHH
Confidence 7899999998643 1244 47899999999988643211 1 12345688999999999984444444677779888
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--C-CCe
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--P-GKT 247 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~-~~~ 247 (465)
++.++.... +++.|++.+++|++........ ...+..+|.+|+++|+++++ . .++
T Consensus 122 ~~~~l~~~~---------~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~d~~~le~~l~~~~~~~~ 179 (401)
T 2bwn_A 122 TLSTLRVLF---------PGLIIYSDSLNHASMIEGIKRN-------------AGPKRIFRHNDVAHLRELIAADDPAAP 179 (401)
T ss_dssp HHHHHHHHS---------TTCEEEEETTCCHHHHHHHHHS-------------CCCEEEECTTCHHHHHHHHHHSCTTSC
T ss_pred HHHHHhcCC---------CCCEEEECchhhHHHHHHHHHc-------------CCeEEEEcCCCHHHHHHHHHhhccCCc
Confidence 888653221 4788999988887665433211 13345667778999999886 1 367
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCccccccccCC----cccEEEecccCCC-c
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI----FPDIMTLAKPLAG-G 320 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~g~~~~~~~~~~----~pdi~t~sK~lg~-G 320 (465)
++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ | +|+.|.++. ..+++ .+.+.++||++++ |
T Consensus 180 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~G 254 (401)
T 2bwn_A 180 KLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFG 254 (401)
T ss_dssp EEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCC
T ss_pred eEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCC
Confidence 88888888888887765 8999999999999999999998 3 555565433 33443 2334489999984 4
Q ss_pred cceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
||+++++++++.+.... ...+.+.++++++++.++++.+.+ ++..++++++.+++.+.|+++ .+...
T Consensus 255 ---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--- 326 (401)
T 2bwn_A 255 ---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMPII--- 326 (401)
T ss_dssp ---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC---
T ss_pred ---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCccc---
Confidence 89999998887765311 111223466888999999998765 367778888888888888775 33322
Q ss_pred eccceEEEEEecC--ChHHHHHHHH-HCCceEeecCC-----C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 396 RGLGLIIGIEFDV--SATPVVDACR-DSGLLVLTAGK-----G-NVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 396 ~~~g~~~~i~~~~--~~~~~~~~l~-~~Gv~v~~~~~-----~-~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.+.++++.++. +..++.+.|+ ++||.+.++.. + +++|++++..++++++++++++|+++++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 327 DHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred CCCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 2345688888742 4567888896 78999987531 1 589999998899999999999999887653
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=271.01 Aligned_cols=333 Identities=11% Similarity=0.056 Sum_probs=225.9
Q ss_pred CEEEecccCcccccCCCCCHHH--HHHHHHHHhhcccccCCCCCH-HHHHHHHHHHhhc-----C--CCe---EEecCCH
Q 012368 98 REYLDLSSGIAVNALGHGDADW--IKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACS-----F--ADR---VFFSNTG 164 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v--~~a~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~-----~--~~~---v~~~~sG 164 (465)
+.++||..+.+. .+|+ +|.+ ++++.+++... ....|+.. ...++++.+++++ + .++ |++|+||
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~ 122 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPD--EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL 122 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGG--GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence 568999998764 5775 5666 77777665431 11122221 2345555555554 4 577 9999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC
Q 012368 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (465)
++|+..+++.+. .++++|++.+|+||++...+.. .+.... . .+..... + ..|+++|+++++
T Consensus 123 ~~al~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~-~---~~~~~~~-~--~~d~~~l~~~l~ 184 (430)
T 2x5f_A 123 THGLSLVGDLFV-----------NQDDTILLPEHNWGNYKLVFNTRNGANLQ-T---YPIFDKD-G--HYTTDSLVEALQ 184 (430)
T ss_dssp HHHHHHHHHHHC-----------CTTCEEEEESSCCTHHHHHHTTTTCCEEE-E---ECCBCTT-S--CBCSHHHHHHHH
T ss_pred hHHHHHHHHHHh-----------CCCCEEEEcCCcCccHHHHHHHhcCCeEE-E---EeccCcc-C--CcCHHHHHHHHH
Confidence 999999999764 1588999999999998765544 332211 1 1111100 0 127899999886
Q ss_pred C--CCeE-EEEEcccCCCCCcccCCHHHHHHHHHHHHH-----hCCEEEEeccccCCCCCCcc-ccc--cccCCccc---
Q 012368 244 P--GKTA-AVFVEPIQGEGGIYSATKEFLQFLRDACDD-----AGALLVFDEVQCGLGRTGYL-WAH--EHYGIFPD--- 309 (465)
Q Consensus 244 ~--~~~a-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~~g~gr~g~~-~~~--~~~~~~pd--- 309 (465)
+ .+++ +++++|.|+ +|. .++.+++++|.++|++ ||+++|+||+|++|.+.|.. ... ...+..++
T Consensus 185 ~~~~~~~~v~i~~p~np-tG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (430)
T 2x5f_A 185 SYNKDKVIMILNYPNNP-TGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAIL 262 (430)
T ss_dssp HCCSSEEEEEECSSCTT-TCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEE
T ss_pred hcCCCCEEEEEcCCCCC-CCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcce
Confidence 3 2444 456667444 454 4688999999999999 99999999999998766542 111 22122233
Q ss_pred ---EEEecccCC-CccceeeEEe---CHHHHhhccCCCCc----CCCCChHHHHHHHHHHHH-HhcCchHHHH---HHHH
Q 012368 310 ---IMTLAKPLA-GGLPIGAALV---TEKVASAINYGDHG----STFAGSPLVCNAAIAVLD-KISNPAFLAS---VSKK 374 (465)
Q Consensus 310 ---i~t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~~----~t~~~~~~~~~aa~a~L~-~~~~~~~~~~---~~~~ 374 (465)
+.++||.++ +|+|+||+++ ++++++.+...... .+++.|+++++++.++|+ .. ++.++ .++.
T Consensus 263 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~ 339 (430)
T 2x5f_A 263 PIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK---QFDKEIEQNIQT 339 (430)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH---HHHHHHHHHHHH
T ss_pred EEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh---HHHHHHHHHHHH
Confidence 557899998 6999999999 99998887643333 677899999999999997 42 22222 3334
Q ss_pred HHHHHHHHHHHHH----cCCCceeeecc-ceEEEEEec-CChHHHHHHHHH-CCceEeecCCCCEEEEecCCCCcHHHHH
Q 012368 375 GHYFKETLKQKLA----RNPHVKDVRGL-GLIIGIEFD-VSATPVVDACRD-SGLLVLTAGKGNVVRLVPPLIISEQELD 447 (465)
Q Consensus 375 ~~~l~~~l~~~~~----~~~~~~~~~~~-g~~~~i~~~-~~~~~~~~~l~~-~Gv~v~~~~~~~~lRi~~~~~~t~e~i~ 447 (465)
....++.+.+.+. ..+ +....+. |.++++.++ .+..++.+.|++ +||.+.+++. +++|++++. .++++++
T Consensus 340 ~~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~~iRis~~~-~~~e~i~ 416 (430)
T 2x5f_A 340 LKERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNA-TDIRIAFSC-VEKDDIP 416 (430)
T ss_dssp HHHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSS-SEEEEEGGG-SCGGGHH
T ss_pred HHHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC-CeEEEEEec-CCHHHHH
Confidence 4444444444444 333 3333333 566888874 467789999998 9999998744 789999885 4899999
Q ss_pred HHHHHHHHHHHHh
Q 012368 448 QAVEILCKTLPVL 460 (465)
Q Consensus 448 ~~l~~l~~~l~~~ 460 (465)
+++++|+++++++
T Consensus 417 ~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 417 HVFDSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=262.40 Aligned_cols=327 Identities=13% Similarity=0.070 Sum_probs=207.8
Q ss_pred EEeCCCCEEEecccCcccccCC--CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc---C-----CCeEEe-
Q 012368 92 LYDAEGREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS---F-----ADRVFF- 160 (465)
Q Consensus 92 ~~d~dG~~ylD~~~~~~~~~lG--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~---~-----~~~v~~- 160 (465)
+.+..|+++|||.+|.+..+.| +.+|.+++++.+++++... ..+.+.....++++.+++++ + .++|++
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~ 98 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT-KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA 98 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc-cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence 3333567899999998655556 5679999999988765311 11112222344555555443 1 678998
Q ss_pred -cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC---C---
Q 012368 161 -SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---G--- 233 (465)
Q Consensus 161 -~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 233 (465)
|+||++|++.+++++..+. ++++|++.+|+||++...+...+... ..+|. +
T Consensus 99 ~~~g~~~a~~~~~~~~~~~~---------~gd~Vl~~~p~y~~~~~~~~~~g~~~-------------~~~~~~~~~~~~ 156 (396)
T 2q7w_A 99 QTPGGTGALRVAADFLAKNT---------SVKRVWVSNPSWPNHKSVFNSAGLEV-------------REYAYYDAENHT 156 (396)
T ss_dssp EESHHHHHHHHHHHHHHHHS---------CCCEEEEEESCCTHHHHHHHHTTCEE-------------EEEECEETTTTE
T ss_pred ecccchhhHHHHHHHHHHhC---------CCCEEEEcCCCchhHHHHHHHcCCce-------------EEEecccCCCCC
Confidence 9999999999998776443 58899999999999876554433221 12222 1
Q ss_pred -CHHHHHhhcCCC--CeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC--ccccccccC--
Q 012368 234 -NIEATRKLIQPG--KTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAHEHYG-- 305 (465)
Q Consensus 234 -d~~~le~~l~~~--~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g--~~~~~~~~~-- 305 (465)
|+++|+++++.. ++++++ ++|.|++ |. .++.+++++|.++|++||++||+||+|++|++.| .......+.
T Consensus 157 ~d~~~l~~~l~~~~~~~~~v~~~~p~npt-G~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 234 (396)
T 2q7w_A 157 LDFDALINSLNEAQAGDVVLFHGCCHNPT-GI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM 234 (396)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTT-CC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCC-CC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhc
Confidence 799999998742 244444 4455554 43 5688999999999999999999999999986653 222222221
Q ss_pred --CcccEEEecccCC-CccceeeEEe---CH----HHHhhccCCCCcCCC-CChHHHHHHHHHHHHHhc--------Cch
Q 012368 306 --IFPDIMTLAKPLA-GGLPIGAALV---TE----KVASAINYGDHGSTF-AGSPLVCNAAIAVLDKIS--------NPA 366 (465)
Q Consensus 306 --~~pdi~t~sK~lg-~G~~iG~v~~---~~----~i~~~~~~~~~~~t~-~~~~~~~~aa~a~L~~~~--------~~~ 366 (465)
...-+.++||.++ +|+|+||+++ ++ ++++.+... ...++ +.|+++++++.++|+... -++
T Consensus 235 ~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~ 313 (396)
T 2q7w_A 235 HKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAA-IRANYSNPPAHGASVVATILSNDALRAIWEQELTD 313 (396)
T ss_dssp CSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHH-HhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 1122458999999 6999999987 55 355444321 12334 348999999888886420 012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---Ccee-eeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCc
Q 012368 367 FLASVSKKGHYFKETLKQKLARNP---HVKD-VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIIS 442 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~---~~~~-~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t 442 (465)
..++++++.+++.+.|++ .+ .+.. .+..|.++++.+ +...+...|.++||++.++ +|++++.. +
T Consensus 314 ~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~-----~Ris~~~~-~ 381 (396)
T 2q7w_A 314 MRQRIQRMRQLFVNTLQE----KGANRDFSFIIKQNGMFSFSGL--TKEQVLRLREEFGVYAVAS-----GRVNVAGM-T 381 (396)
T ss_dssp C-CHHHHHHHHHHHHHHH----TTCCSCCTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGGGC-C
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCCCcceecCCCceEEEecC--CHHHHHHHHHhcCeeecCC-----ceEEEeec-C
Confidence 233444444444444443 33 1222 223456656554 3445566667899999863 69998754 8
Q ss_pred HHHHHHHHHHHHHH
Q 012368 443 EQELDQAVEILCKT 456 (465)
Q Consensus 443 ~e~i~~~l~~l~~~ 456 (465)
++++++++++|+++
T Consensus 382 ~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 382 PDNMAPLCEAIVAV 395 (396)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=263.23 Aligned_cols=344 Identities=11% Similarity=0.028 Sum_probs=235.4
Q ss_pred EEecccCcccccCCCCCHHHHHHHH--HHHhhcccccCCC--CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHH--HH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVV--DQANVLTHVSNMY--YSIPQIELAKRLVACSF--ADRVFFSNTGTEANE--AA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~--~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~--~a 171 (465)
.|||..+.+...+...+|.+++++. +.+... .....| +.....+|++.++++++ .++|++|+|+++|+. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDG-LDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETT-EETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcc-hhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 4788877665333445667888875 443321 111223 22335688888988887 679999999999997 78
Q ss_pred HHHHHHHhhhcCCCCCCC--------CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC
Q 012368 172 IKFARKFQRHSNPDSKEP--------ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~--------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (465)
++.+.... ++ +++|++.+|+|+++...+...+...... +...+ . .|+++|+++++
T Consensus 106 ~~~l~~~~--------~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v----~~~~~-g----~d~~~l~~~l~ 168 (423)
T 3ez1_A 106 TFALLHGV--------RGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTV----DMQSD-G----PDVDAVERLAG 168 (423)
T ss_dssp HHHHHTCC--------TTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEE----EEETT-E----ECHHHHHHHHH
T ss_pred HHHHhccC--------CCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEec----cCCCC-C----CCHHHHHHHHh
Confidence 87665210 01 5899999999999876554443221111 11111 1 28999999995
Q ss_pred -CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCCCCCC-c------cccc----cccCCcccE
Q 012368 244 -PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTG-Y------LWAH----EHYGIFPDI 310 (465)
Q Consensus 244 -~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~gr~g-~------~~~~----~~~~~~pdi 310 (465)
..++++|+++|..+|++...++.+.+++|.++| ++||++||+||+|..+...+ . .+.. +..+....+
T Consensus 169 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 169 TDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred hCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 346888888875444433556888899999999 99999999999998532222 1 1111 123445567
Q ss_pred EEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-hc-Cch----HHHHHHHHHHHHHHHHHH
Q 012368 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-IS-NPA----FLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 311 ~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-~~-~~~----~~~~~~~~~~~l~~~l~~ 384 (465)
.+|||.+.+|+|+||+++++++++.+.......+++.+++++.++.++|+. .. -.. ..+.++++.+.+.+.|.+
T Consensus 249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (423)
T 3ez1_A 249 ASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRA 328 (423)
T ss_dssp EESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999667999999999999998887655567788999999999998885 11 112 223334445555555555
Q ss_pred HHHcCC-Cce-eeeccceEEEEEec-CChHHHHHHHHHCCceEeecC---------CCCEEEEecCCCCcHHHHHHHHHH
Q 012368 385 KLARNP-HVK-DVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEI 452 (465)
Q Consensus 385 ~~~~~~-~~~-~~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~~~t~e~i~~~l~~ 452 (465)
.+...+ .+. ..+..|+++++.++ .+...+.+.|.++||.+.+++ ..+++||+++.. +++++++++++
T Consensus 329 ~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~ 407 (423)
T 3ez1_A 329 ELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQV 407 (423)
T ss_dssp HHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHH
T ss_pred hcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHH
Confidence 444444 222 23456888899884 356778888999999998832 137899998755 99999999999
Q ss_pred HHHHHHHhhh
Q 012368 453 LCKTLPVLDS 462 (465)
Q Consensus 453 l~~~l~~~~~ 462 (465)
|.++++++..
T Consensus 408 l~~~l~~~~~ 417 (423)
T 3ez1_A 408 VAACIRLATE 417 (423)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-30 Score=257.35 Aligned_cols=331 Identities=15% Similarity=0.090 Sum_probs=216.1
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHH------------hhcccccCC-CCCHHHHHHHHHHHhhcC------CCeEE
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQA------------NVLTHVSNM-YYSIPQIELAKRLVACSF------ADRVF 159 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~------------~~~~~~~~~-~~~~~~~~la~~l~~~~~------~~~v~ 159 (465)
.++||.++. +++| +|.+.+++.++. .....+... +..+.++++++++.+.++ .++|+
T Consensus 37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 478888764 3565 468888887532 111111111 122335555555554322 67899
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHH
Q 012368 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239 (465)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 239 (465)
+++|+++|+..++++++. ++++|++.+|+||++........+..... .+......+ ..|+++|+
T Consensus 113 ~~~G~~~ai~~~~~~~~~-----------~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~---v~~~~~~~~--~~d~~~l~ 176 (428)
T 1iay_A 113 MAGGATGANETIIFCLAD-----------PGDAFLVPSPYYPAFNRDLRWRTGVQLIP---IHCESSNNF--KITSKAVK 176 (428)
T ss_dssp EEEHHHHHHHHHHHHHCC-----------TTCEEEEESSCCTTHHHHTTTTTCCEEEE---ECCCTTTTT--CCCHHHHH
T ss_pred EccChHHHHHHHHHHhCC-----------CCCeEEEccCCCcchHHHHHHhcCCEEEE---eecCCccCC--cCCHHHHH
Confidence 999999999999997651 57899999999998765333222221111 111110000 02789999
Q ss_pred hhcCC-----CCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-ccccc-------C
Q 012368 240 KLIQP-----GKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-------G 305 (465)
Q Consensus 240 ~~l~~-----~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~-------~ 305 (465)
++++. .++++|+ ++|.| ++|. .++.+++++|.++|++||++||+||+|+++++.+..+ ..... +
T Consensus 177 ~~l~~~~~~~~~~~~v~l~~p~n-ptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (428)
T 1iay_A 177 EAYENAQKSNIKVKGLILTNPSN-PLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTY 254 (428)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCT-TTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTT
T ss_pred HHHHHHHhcCCceEEEEEcCCCC-CCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccccc
Confidence 88852 2466555 45544 4454 4588999999999999999999999999875554321 11111 1
Q ss_pred Cccc----EEEecccCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-C----chHHHHHHHH
Q 012368 306 IFPD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-N----PAFLASVSKK 374 (465)
Q Consensus 306 ~~pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~----~~~~~~~~~~ 374 (465)
+.+| +.++||++| +|+|+|++++ ++++++.+.. ...+++.++++++++.++|+... . ++..++++++
T Consensus 255 ~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 255 CNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK--MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp SCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH--HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH--HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 2256 568999998 6999999999 6888887753 23346788999999888886421 0 2234444455
Q ss_pred HHHHHHHHHHHHHcCCCceeeec-cceEEEEEecC--------ChHHHHHHHHHC-CceEeecCC-----CCEEEEecCC
Q 012368 375 GHYFKETLKQKLARNPHVKDVRG-LGLIIGIEFDV--------SATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPL 439 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~~~~-----~~~lRi~~~~ 439 (465)
.+++.+.|++ ++. ...++ .|+|+++++.. ...++.+.|+++ ||++.++.. ++++||+++
T Consensus 333 ~~~l~~~L~~----~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~- 406 (428)
T 1iay_A 333 HKHFTNGLEV----VGI-KCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA- 406 (428)
T ss_dssp HHHHHHHHHH----TTC-CBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-
T ss_pred HHHHHHHHHh----cCC-cccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-
Confidence 5555555544 332 22334 57888888842 234788999886 999988641 368999988
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 012368 440 IISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 440 ~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++++++++++++|++++++
T Consensus 407 ~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 407 NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp SSCHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhc
Confidence 57999999999999998865
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=260.97 Aligned_cols=335 Identities=11% Similarity=0.020 Sum_probs=215.8
Q ss_pred CCCEEEecccCcccccCCC--CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-C-------CCeEEe--cCC
Q 012368 96 EGREYLDLSSGIAVNALGH--GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F-------ADRVFF--SNT 163 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~-------~~~v~~--~~s 163 (465)
+|+.++||..+.+..+.|| .+|.+.+++.+++........+.+.....++++.+++++ + .++|++ |+|
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g 107 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG 107 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence 3677899999876445554 458999999988732111111112222344555555444 2 589999 999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCC-----ceEEEEcCCcccCccccccccCC-CCcCCCCCCCC--CCceEeeCCCH
Q 012368 164 GTEANEAAIKFARKFQRHSNPDSKEPA-----TEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVM--PGVNFVEYGNI 235 (465)
Q Consensus 164 G~eA~~~al~~a~~~t~~~~~~~~~~~-----~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~d~ 235 (465)
|++|++.+++++..+. ++ ++|++.+|+||++...+...+.. .... +.. .+.. .|+
T Consensus 108 g~~a~~~~~~~~~~~~---------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~----~~~~~~~~~----~d~ 170 (412)
T 1ajs_A 108 GTGALRIGAEFLARWY---------NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSY----RYWDTEKRG----LDL 170 (412)
T ss_dssp HHHHHHHHHHHHHHHS---------SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEE----ECEETTTTE----ECH
T ss_pred cHHHHHHHHHHHHHhC---------cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEE----eeecCCCCc----cCH
Confidence 9999999988665432 46 89999999999987655444332 1111 110 1111 178
Q ss_pred HHHHhhcCC--CCeEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---ccccccccCCccc
Q 012368 236 EATRKLIQP--GKTAAV-FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLWAHEHYGIFPD 309 (465)
Q Consensus 236 ~~le~~l~~--~~~a~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g---~~~~~~~~~~~pd 309 (465)
++|++++++ .++.++ +++|+|++| . .++.+++++|.++|++||++||+||+|++|++.| .......+...+|
T Consensus 171 ~~l~~~l~~~~~~~~~v~~~~p~nptG-~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 1ajs_A 171 QGFLSDLENAPEFSIFVLHACAHNPTG-T-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGF 248 (412)
T ss_dssp HHHHHHHHHSCTTCEEEEESSSCTTTC-C-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCCCC-C-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCC
Confidence 999998863 234444 456666654 3 5688999999999999999999999999998765 3222322211223
Q ss_pred ----EEEecccCCC-ccceeeEEe---CHHHH----hhccCCCCcCCCC-ChHHHHHHHHHHHHHhc--------CchHH
Q 012368 310 ----IMTLAKPLAG-GLPIGAALV---TEKVA----SAINYGDHGSTFA-GSPLVCNAAIAVLDKIS--------NPAFL 368 (465)
Q Consensus 310 ----i~t~sK~lg~-G~~iG~v~~---~~~i~----~~~~~~~~~~t~~-~~~~~~~aa~a~L~~~~--------~~~~~ 368 (465)
+.++||.+++ |+|+||+++ +++++ +.+.. .+..+++ .++++++++.++|+... .++..
T Consensus 249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 327 (412)
T 1ajs_A 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQK-IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA 327 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH-HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHH-HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence 5589999997 999999999 88743 33331 1334555 58899999999997531 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-Cceee-eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHH
Q 012368 369 ASVSKKGHYFKETLKQKLARNP-HVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQEL 446 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~-~~~~~-~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i 446 (465)
++++++.+++.+.|+++ ..| .+... +..|.+.++.+ +...+...|.++||++.++ +|++++. .+++++
T Consensus 328 ~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~-----~Ris~~~-~~~~~i 397 (412)
T 1ajs_A 328 DRILSMRSELRARLEAL--KTPGTWNHITDQIGMFSFTGL--NPKQVEYLINQKHIYLLPS-----GRINMCG-LTTKNL 397 (412)
T ss_dssp HHHHHHHHHHHHHHHHT--TCSSCCHHHHHCCSSEEECCC--CHHHHHHHHHTTCEECCTT-----SEEEGGG-CCTTTH
T ss_pred HHHHHHHHHHHHHHHhh--CCCCCeeEEcCCCceEEEeCC--CHHHHHHHHHhCCEEecCC-----cEEEeee-CCHHHH
Confidence 45555555555555443 101 12222 33456665544 3444445556889999863 5888774 489999
Q ss_pred HHHHHHHHHHHHHh
Q 012368 447 DQAVEILCKTLPVL 460 (465)
Q Consensus 447 ~~~l~~l~~~l~~~ 460 (465)
++++++|+++++++
T Consensus 398 ~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 398 DYVATSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=260.57 Aligned_cols=352 Identities=13% Similarity=0.064 Sum_probs=231.3
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHh-hcccccCCCCCHH-HHHHHHHHHhhcC--CCeEEecCCHHHHH--HHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVSNMYYSIP-QIELAKRLVACSF--ADRVFFSNTGTEAN--EAAIK 173 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~-~~~~~~~~~~~~~-~~~la~~l~~~~~--~~~v~~~~sG~eA~--~~al~ 173 (465)
.|||..|.+...+...+|.+++++.+++. ........|+... ..+|++.++++++ +++|++|+|+++++ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 58888876532112245577777765531 1110112233332 5678888888776 67999999999997 56666
Q ss_pred HHHHHhhhcCCCCC-C-CCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 174 FARKFQRHSNPDSK-E-PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 174 ~a~~~t~~~~~~~~-~-~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
++..... .+.... . .+++|++.+|+|+++...+...+...... +...+ . .|+++|++++++.++++|+
T Consensus 114 ~l~~~~~-~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v----~~~~~-g----~d~~~l~~~l~~~~~~~v~ 183 (422)
T 3d6k_A 114 SYTWGNN-DSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINV----PMTDE-G----PDMGVVRELVKDPQVKGMW 183 (422)
T ss_dssp HHHHCCT-TCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEE----EEETT-E----ECHHHHHHHHTSTTEEEEE
T ss_pred HhcCccc-ccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEec----CCCCC-C----CCHHHHHHHHhcCCCeEEE
Confidence 5542000 000000 0 03479999999999886554443221110 11111 1 2899999999754678887
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHH-HhCCEEEEeccccC--CCCCCcc-ccc-------cccCCcccEEEecccCCCc
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACD-DAGALLVFDEVQCG--LGRTGYL-WAH-------EHYGIFPDIMTLAKPLAGG 320 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~~g--~gr~g~~-~~~-------~~~~~~pdi~t~sK~lg~G 320 (465)
+.|+.+|++..+++.+++++|.++|+ +||+++|+||+|.. |+..+.. ... +..+..+++.+|||..++|
T Consensus 184 ~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G 263 (422)
T 3d6k_A 184 TVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAG 263 (422)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTT
T ss_pred EcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcc
Confidence 66654443334679999999999999 99999999999974 6544421 111 2345566778999996669
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHHHHHHHcCCCcee-
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-----NPAFLASVSKKGHYFKETLKQKLARNPHVKD- 394 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~- 394 (465)
+|+||+++++++++.+.......+++.+++++.++.++|+... -+...+.++++.+.+.+.|.+.+...+.+..
T Consensus 264 lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~ 343 (422)
T 3d6k_A 264 SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT 343 (422)
T ss_dssp SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEC
T ss_pred cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEe
Confidence 9999999999999888654445567889999999988886310 0122333444555666666655444443332
Q ss_pred eeccceEEEEEecC-ChHHHHHHHHHCCceEeecC---------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 395 VRGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 395 ~~~~g~~~~i~~~~-~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+..|+++++.++. +...+.+.|.++||.+.+++ ..+++||+++. .+++++++++++|+++++++.+
T Consensus 344 ~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 344 SPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp CCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 33457888998843 46678888899999998832 13689998877 7999999999999999987754
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=246.15 Aligned_cols=331 Identities=16% Similarity=0.060 Sum_probs=224.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCC-------CCHHHHHHHHHHHhhcCC---CeEEecCCHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-------YSIPQIELAKRLVACSFA---DRVFFSNTGT 165 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~~~la~~l~~~~~~---~~v~~~~sG~ 165 (465)
+|+.++++..+.. |+.+|++++++.+++++.......+ +.....+++++++++++. ++|++++||+
T Consensus 20 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAAS----AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTTC----CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 4544444433322 4688999999999987642111111 234478899999999875 7899999999
Q ss_pred HHHHHHHHHHHHH-hhhcCCCCCCCCceEEEEcCCcccCccccc---cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhh
Q 012368 166 EANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKL 241 (465)
Q Consensus 166 eA~~~al~~a~~~-t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 241 (465)
+|+..+++.++.. . .++++|++.+++||+...... ...+..... .+...+. ..|+++|+++
T Consensus 96 ~a~~~~~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~----~~d~~~l~~~ 160 (406)
T 1kmj_A 96 EGINLVANSWGNSNV--------RAGDNIIISQMEHHANIVPWQMLCARVGAELRV---IPLNPDG----TLQLETLPTL 160 (406)
T ss_dssp HHHHHHHHHTHHHHC--------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE---ECBCTTS----CBCGGGHHHH
T ss_pred HHHHHHHHHhhhhcC--------CCCCEEEEecccchHHHHHHHHHHHhCCCEEEE---EecCCCC----CcCHHHHHHH
Confidence 9999999987432 1 158899999999998764321 111111111 1111111 1278999999
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC
Q 012368 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG 319 (465)
Q Consensus 242 l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~ 319 (465)
+++ ++++|++++.++++|.+.+ +++|.++|++||++||+||+|+. |.. .+..... .+|++ +++|.+|.
T Consensus 161 l~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~--~~~~~~~--~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 161 FDE-KTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHH--PVDVQAL--DCDFYVFSGHKLYGP 230 (406)
T ss_dssp CCT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTS--CCCHHHH--TCSEEEEEGGGTTSC
T ss_pred hcc-CCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCC--CCccccc--CCCEEEEEchhccCC
Confidence 975 5788888888777887765 99999999999999999999974 332 1122222 36665 68899953
Q ss_pred ccceeeEEeCHHHHhhccCCCCcC---------------------CCCChHHHHHHHH-HHHHHhcC---chHHHHHHHH
Q 012368 320 GLPIGAALVTEKVASAINYGDHGS---------------------TFAGSPLVCNAAI-AVLDKISN---PAFLASVSKK 374 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~~~~---------------------t~~~~~~~~~aa~-a~L~~~~~---~~~~~~~~~~ 374 (465)
..+|++++++++++.+.+...++ +.+.+++.+.+++ ++++.+.+ +.+.++++++
T Consensus 231 -~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 309 (406)
T 1kmj_A 231 -TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNL 309 (406)
T ss_dssp -TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 22899999999998886543221 1234555665555 67776643 2344444455
Q ss_pred HHHHHHHHHHHHHcCCCceeeec--cceEEEEEec-CChHHHHHHHHHCCceEeecC-----------CCCEEEEecCCC
Q 012368 375 GHYFKETLKQKLARNPHVKDVRG--LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLI 440 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------~~~~lRi~~~~~ 440 (465)
.+++.+. +.+.+.+..... .|.++.+.++ .+..++.+.|.++||.+.++. ..+++|++++..
T Consensus 310 ~~~l~~~----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~ 385 (406)
T 1kmj_A 310 MHYALSQ----LESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMY 385 (406)
T ss_dssp HHHHHHH----HTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTT
T ss_pred HHHHHHH----HhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecC
Confidence 5555444 444443443444 6788888774 356788999999999998753 137899999999
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 012368 441 ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 441 ~t~e~i~~~l~~l~~~l~~~ 460 (465)
+|++|+++++++|+++++.+
T Consensus 386 ~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 386 NTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988765
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=251.82 Aligned_cols=302 Identities=12% Similarity=0.071 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHHhhcC--C---------CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccc
Q 012368 138 YSIPQIELAKRLVACSF--A---------DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMG 206 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~--~---------~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~ 206 (465)
..+.++++++++.+.++ . ++|++|+|+++|+..+++++. .++++|++.+|+|+++...
T Consensus 80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-----------~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-----------NPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-----------CCCCEEEEeCCCcHHHHHH
Confidence 34557778888777665 2 589999999999999999764 2689999999999998765
Q ss_pred cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----------CCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 012368 207 ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----------GKTAAVFVEPIQGEGGIYSATKEFLQFLRDA 275 (465)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----------~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l 275 (465)
+...+.... . .+...+ . .|+++|+++++. .++++|+++|..+|++..+++.+.+++|.++
T Consensus 149 ~~~~g~~~~-~---v~~~~~-~----~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~ 219 (425)
T 2r2n_A 149 LHPLGCNII-N---VASDES-G----IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYEL 219 (425)
T ss_dssp HGGGTCEEE-E---ECEETT-E----ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHH
T ss_pred HHHcCCEEE-E---eCcCCC-C----CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHH
Confidence 543332211 1 011111 1 278999998862 3467887776433332245688999999999
Q ss_pred HHHhCCEEEEeccccCCCCCCcc----ccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHH
Q 012368 276 CDDAGALLVFDEVQCGLGRTGYL----WAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLV 351 (465)
Q Consensus 276 ~~~~g~llI~DEv~~g~gr~g~~----~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~ 351 (465)
|++||++||+||+|+++.+.|.. ..++..+....+.+|||+++.|+|+||+++++++++.+.......+++.|+++
T Consensus 220 a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~ 299 (425)
T 2r2n_A 220 ARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPSTFN 299 (425)
T ss_dssp HHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHH
T ss_pred HHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999987655531 22222344456678999999899999999999998888654455678889999
Q ss_pred HHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHc-CCCc-e-eeeccceEEEEEecC--ChHH-HHHHHHHCCc
Q 012368 352 CNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLAR-NPHV-K-DVRGLGLIIGIEFDV--SATP-VVDACRDSGL 422 (465)
Q Consensus 352 ~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~-~~~~~g~~~~i~~~~--~~~~-~~~~l~~~Gv 422 (465)
+.++.++|+.+.++ ++.+++++.....++.+.+.+.+ +|.+ . ..+..|.+++++++. +..+ +.+.|.++||
T Consensus 300 q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv 379 (425)
T 2r2n_A 300 QLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGV 379 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTE
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCc
Confidence 99999999864222 23333333333333444443433 3332 2 234567888998842 4455 5788889999
Q ss_pred eEeecCC--------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 423 LVLTAGK--------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 423 ~v~~~~~--------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.|+.. .+++||+++. .+++++++++++|++++++.
T Consensus 380 ~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 380 LMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp ECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred EEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 9987521 2689998774 59999999999999988653
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=253.62 Aligned_cols=297 Identities=13% Similarity=0.067 Sum_probs=198.3
Q ss_pred HHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc-----eEEEE-cCCcccCcccccccc
Q 012368 142 QIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT-----EFVSF-TNSFHGRTMGALALT 211 (465)
Q Consensus 142 ~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~-----~ii~~-~~~yhg~~~~~~~~~ 211 (465)
++++++++.+.++ +++|++|+||++|+..+++++.. +++ +|++. +|+||++...+....
T Consensus 81 r~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-----------~gd~~~~~~vi~~~~p~~~~~~~~~~~~~ 149 (417)
T 3g7q_A 81 LNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG-----------RRADGSTKKVLFPLAPEYIGYADSGLEDD 149 (417)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB-----------C----CCBEEEESSCCCHHHHHC-----C
T ss_pred HHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC-----------CCccCCcceEEEeCCCccccchhhccchh
Confidence 4445555444333 68999999999999999997752 333 78886 999999875543221
Q ss_pred CCCCcCCCCCCCCCCceEeeC------CCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012368 212 SKEHYRSPFEPVMPGVNFVEY------GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
.. ....+.+..++. -|+++|+ +.+ ++++|+++..++.+|. .++.+.+++|.++|++||+++|+
T Consensus 150 ~~-------~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~ 218 (417)
T 3g7q_A 150 LF-------VSARPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVI 218 (417)
T ss_dssp CE-------EECCCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEE
T ss_pred hh-------ccccCcccccCCcccccccCHHHhc--ccc-CceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEE
Confidence 10 011111222221 2777777 544 4555555433444454 45788899999999999999999
Q ss_pred eccccCCCCCCccc---cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHh
Q 012368 286 DEVQCGLGRTGYLW---AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362 (465)
Q Consensus 286 DEv~~g~gr~g~~~---~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~ 362 (465)
||+|..+ ..+..+ .....+....+.+|||...+|+|+||+++++++++.+....+..+++.++++++++.+.|+..
T Consensus 219 De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (417)
T 3g7q_A 219 DNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRN 297 (417)
T ss_dssp ECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTT
T ss_pred eCCCccc-cccccccccccCCCCCEEEEEechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCc
Confidence 9999753 122111 111223445577899964468999999999999998876556667788999999999888743
Q ss_pred cCc-----hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHHHHHHHHHCCceEeecCC-----
Q 012368 363 SNP-----AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAGK----- 429 (465)
Q Consensus 363 ~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~~----- 429 (465)
... .+.++++++.+.+.+.|.+.+...+.....+..|.++++.++ .+..++.+.|.++||.+.++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~ 377 (417)
T 3g7q_A 298 DLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGL 377 (417)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTB
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCC
Confidence 211 134445556666666666544333332333456888888884 3678899999999999987531
Q ss_pred -------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 430 -------GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 430 -------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.+++||+++. +++++++++++|.++++++.++
T Consensus 378 ~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~~ 416 (417)
T 3g7q_A 378 DKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWRE 416 (417)
T ss_dssp SSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHhc
Confidence 2589999874 9999999999999999887653
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=251.07 Aligned_cols=327 Identities=14% Similarity=0.083 Sum_probs=225.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC----CCCC--HHHHHHHHHHHhhcC--CCeEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN----MYYS--IPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~----~~~~--~~~~~la~~l~~~~~--~~~v~~~~sG~eA 167 (465)
++..|+|.. ..|+.+|.|++|+.+++....+... .++. ....+++++|+++++ .++|++++||++|
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 345666643 2578889999999998876421111 2222 457889999999988 4589999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc---cccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhc
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLI 242 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l 242 (465)
+..+++.++ . .++++|++.+|+||++..... ...+..... .+.. .+. ..|+++|++++
T Consensus 89 ~~~~~~~~~--~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~~----~~d~~~l~~~i 151 (390)
T 1elu_A 89 CDIVLWGLD--W--------HQGDEILLTDCEHPGIIAIVQAIAARFGITYRF---FPVAATLNQ----GDAAAVLANHL 151 (390)
T ss_dssp HHHHHHHSC--C--------CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEE---ECCGGGSSS----SCHHHHHHTTC
T ss_pred HHHHHhCCC--C--------CCCCEEEEecCcccHHHHHHHHHHHHhCcEEEE---EcCCCCCCc----cchHHHHHHhc
Confidence 999999763 1 158899999999999764321 111111100 0110 000 12789999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH----HhCCEEEEeccccCCCCCCccccccccCCcccEEE--eccc
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD----DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKP 316 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~ 316 (465)
++ ++++|++++.++++|.+.+ +++|.++|+ +||+++|+||+|+ +|... .+.....+|+++ ++|+
T Consensus 152 ~~-~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~----~~~~~~~~d~~~~s~~K~ 221 (390)
T 1elu_A 152 GP-KTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP----LDFSRLEVDYYAFTGHKW 221 (390)
T ss_dssp CT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC----CCTTTSCCSEEEEESSST
T ss_pred CC-CceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC----CChhhcCCCEEEcccccc
Confidence 75 5788888877777777765 899999999 9999999999997 44332 111233467765 8898
Q ss_pred CCCccceeeEEeCHHHHhhccCCC----------------------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHH
Q 012368 317 LAGGLPIGAALVTEKVASAINYGD----------------------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKK 374 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~----------------------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~ 374 (465)
+.+|.++|++++++++++.+.+.. ...+.+.++++++++.++++.+.+.++.+++.+.
T Consensus 222 ~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~ 301 (390)
T 1elu_A 222 FAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQA 301 (390)
T ss_dssp TCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777888999999999888776421 1112345778888888888866443333333333
Q ss_pred HHHHHHHHHHHHHcCCCceee---eccceEEEEEec--CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHH
Q 012368 375 GHYFKETLKQKLARNPHVKDV---RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~---~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~ 449 (465)
...+++.+.+.+.+++.+... ++.|.++.+.++ .+..++.+.|.++||.+.++...+++||+++..+++++++++
T Consensus 302 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~ 381 (390)
T 1elu_A 302 ICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHL 381 (390)
T ss_dssp HHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHH
Confidence 333444444444444333333 456888888873 357789999999999999875347899999889999999999
Q ss_pred HHHHHH
Q 012368 450 VEILCK 455 (465)
Q Consensus 450 l~~l~~ 455 (465)
+++|++
T Consensus 382 ~~~l~~ 387 (390)
T 1elu_A 382 LARLAD 387 (390)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 999865
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=259.92 Aligned_cols=353 Identities=14% Similarity=0.081 Sum_probs=233.3
Q ss_pred EEecccCcccccCCCCCHHHHHHH--HHHHhhcccccCCCCC-HHHHHHHHHHHhhcC--CCeEEecCCHHHHH--HHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAV--VDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEAN--EAAI 172 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~--~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~~--~~~v~~~~sG~eA~--~~al 172 (465)
.+||..|.+...+...++.+.+++ .+++.........|+. ....+|++.++++++ .++|++|+|+++|+ ..++
T Consensus 35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 114 (427)
T 3ppl_A 35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS 114 (427)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence 478887765433332333466665 4444432211222332 235678888888776 68999999999999 5777
Q ss_pred HHHHHHhh-hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012368 173 KFARKFQR-HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 173 ~~a~~~t~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
+++...+. ...++...++++|++.+|+|+++...+...+...... +...+. -|+++|+++++..++++|+
T Consensus 115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v----~~~~~g-----~d~~~l~~~l~~~~~~~v~ 185 (427)
T 3ppl_A 115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISV----PMNEDG-----PDMDAVEELVKNPQVKGMW 185 (427)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEE----EEETTE-----ECHHHHHHHTTSTTEEEEE
T ss_pred HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEe----CCCCCC-----CCHHHHHHHHhcCCCeEEE
Confidence 76653100 0000000017899999999998876554433221110 111110 1899999999645788998
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCCCCCCcc----ccc------cccCCcccEEEecccCCCc
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTGYL----WAH------EHYGIFPDIMTLAKPLAGG 320 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~gr~g~~----~~~------~~~~~~pdi~t~sK~lg~G 320 (465)
++|..+|++....+.+.+++|.++| ++||+++|+||+|.++.+.+.. ... +..+...++.+|||.+++|
T Consensus 186 ~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G 265 (427)
T 3ppl_A 186 VVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAG 265 (427)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTT
T ss_pred ECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcC
Confidence 8885444333556888899999999 9999999999999985333321 111 1345566778999996679
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc---C--chHHHHHHHHHHHHHHHHHHHHHcCCCce-e
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---N--PAFLASVSKKGHYFKETLKQKLARNPHVK-D 394 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~ 394 (465)
+|+||+++++++++.+.......+++.+++++.++.++|+... + ....+.++++.+.+.+.|.+.+...+.+. .
T Consensus 266 ~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~ 345 (427)
T 3ppl_A 266 AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWT 345 (427)
T ss_dssp SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEC
T ss_pred ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe
Confidence 9999999999999888655555677889999999888876311 0 12334444555556666655444333222 2
Q ss_pred eeccceEEEEEec-CChHHHHHHHHHCCceEeecC---------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 395 VRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 395 ~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+..|+++++.++ .+..++.+.|.++||.+.+++ ..+++||+++.. +++++++++++|.++++++..
T Consensus 346 ~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~~ 422 (427)
T 3ppl_A 346 VPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAAA 422 (427)
T ss_dssp CCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 3345888899884 357788999999999998832 237899988655 899999999999999987653
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=254.67 Aligned_cols=338 Identities=12% Similarity=0.060 Sum_probs=217.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCCC-CHHHHHHHHHHHhhc----C--CCeEEecCCHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMYY-SIPQIELAKRLVACS----F--ADRVFFSNTGTE 166 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~~-~~~~~~la~~l~~~~----~--~~~v~~~~sG~e 166 (465)
+|+++|||.++.+. -..+|.|++|+.+++++... ....|. .....+|++.+++++ + .++|++++|+++
T Consensus 54 ~~~~~i~l~~~~~~---~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~ 130 (432)
T 3ei9_A 54 PDAQVISLGIGDTT---EPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKC 130 (432)
T ss_dssp TTCCCEECSSCCCC---SCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred CCCCeEEccCCCCC---CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHH
Confidence 57889999998663 34889999999999885322 112222 222345555555553 3 679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH----HHHHhhc
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI----EATRKLI 242 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~le~~l 242 (465)
++..+ ..+. + +++.|++.+|+|+++...+...+....+.. .......+..+|.++. .++++
T Consensus 131 al~~l-~~l~---~--------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-- 195 (432)
T 3ei9_A 131 DISRL-QVMF---G--------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFFPDLST-- 195 (432)
T ss_dssp HHHHH-HHHH---C--------TTCCEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTSCCGGG--
T ss_pred HHHHH-HHHc---C--------CCCEEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCcCChhh--
Confidence 99874 3222 1 689999999999998766544332211100 0000012334443321 12222
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccc----cCCcccEEEecccCC
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH----YGIFPDIMTLAKPLA 318 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~----~~~~pdi~t~sK~lg 318 (465)
.++...++++.|.|++| . +++.+.+++|+++|++||++||+||+|++|...+....... .+....+.|+||++|
T Consensus 196 ~~~~~~v~l~~p~NPtG-~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 273 (432)
T 3ei9_A 196 VGRTDIIFFCSPNNPTG-A-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAG 273 (432)
T ss_dssp CCCCSEEEEESSCTTTC-C-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHC
T ss_pred CCCCCEEEEeCCCCCCC-C-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccC
Confidence 12233455555555444 3 45888999999999999999999999998755443222222 123345668999998
Q ss_pred -CccceeeEEeCHHH--------HhhccCCCCcCCCCChHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHH
Q 012368 319 -GGLPIGAALVTEKV--------ASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---NPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 319 -~G~~iG~v~~~~~i--------~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~---~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
.|+|+||+++++++ ++.+.......+++.++++++++.+++.... .++..++++++.+++++.|++
T Consensus 274 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-- 351 (432)
T 3ei9_A 274 FTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS-- 351 (432)
T ss_dssp TTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 69999999999887 5555432233455688999999888875311 133445555555566555544
Q ss_pred HcCCCceeeeccceEEEEEec-CChHHHHHHHHHC-CceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 387 ARNPHVKDVRGLGLIIGIEFD-VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~~-Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+........|.++++.++ .+..+++..|+++ ||++.++.. .+++||++ ..+++++++++++|++--..
T Consensus 352 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 352 --LGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENILEACRRFKQLYKH 427 (432)
T ss_dssp --TTCCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHTT
T ss_pred --CCceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHhhh
Confidence 3322222235778888884 4567788888765 999987521 37899974 66999999999999875443
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=245.72 Aligned_cols=322 Identities=14% Similarity=0.078 Sum_probs=217.5
Q ss_pred CCCHHHHHHHHHHHhhcccccCCC--CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhh--cCCCCC
Q 012368 114 HGDADWIKAVVDQANVLTHVSNMY--YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRH--SNPDSK 187 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~--~~~~~~ 187 (465)
..+|++.+++.+++......+..+ ..+...++++++++.++ .++|++++||++|+..++++++..... ......
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 367899999999887532211222 13346788999999887 678999999999999999988764100 000000
Q ss_pred CCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
.++++|++.+++|+++...+...+.. +..+|.+ |+++|++++++.++++|++++.++.+|.+
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~ 187 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREMMDLE-------------YIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTI 187 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHHHTCE-------------EEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCB
T ss_pred CCCeEEEECCcchhHHHHHHHHcCce-------------eEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCC
Confidence 14789999999998876544333221 2222322 89999999975245555555555556666
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCCC--CCCc---------cccccccCCcccEEEecccCCCccceeeEEeCHH
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLG--RTGY---------LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g--r~g~---------~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~ 331 (465)
.+ +++|.++|++||++||+||+|+++. ..+. .+.... ++.+.+.+++|.+++|+++|+++++++
T Consensus 188 ~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~ 262 (397)
T 3f9t_A 188 DN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDI 262 (397)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSG
T ss_pred CC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCH
Confidence 54 9999999999999999999998742 2222 222233 444445567798888889999988654
Q ss_pred -HHhhcc---CCCC--------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc
Q 012368 332 -VASAIN---YGDH--------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG 399 (465)
Q Consensus 332 -i~~~~~---~~~~--------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g 399 (465)
+.+.+. +... +.+...+++++.++++.+.....++..++++++.+++.+.|++. .+.. ...+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~~ 338 (397)
T 3f9t_A 263 GYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFKP--VIEPIL 338 (397)
T ss_dssp GGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCB--SSCCSS
T ss_pred HHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCEE--EcCCCc
Confidence 444432 1111 22233466777777776654333556677777777777777664 3322 223456
Q ss_pred eEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 400 LIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 400 ~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.++++.+. ...++.+.|.++||.+.++..++++|++++..+|++++++++++|+++++
T Consensus 339 ~~~~~~~~-~~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 339 NIVAIEDE-DYKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp SEEEEECT-THHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred cEEEEEeC-CHHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 77777763 36789999999999999876558999999988999999999999998764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=254.71 Aligned_cols=338 Identities=12% Similarity=0.059 Sum_probs=224.5
Q ss_pred CCEEEecccCcc---cccCCCCCHHHHHHHHHHHhhc--ccccCCCCCHHHHHHHHHHHhhcCCC---eEEecCCHHHHH
Q 012368 97 GREYLDLSSGIA---VNALGHGDADWIKAVVDQANVL--THVSNMYYSIPQIELAKRLVACSFAD---RVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~---~~~lGh~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~~---~v~~~~sG~eA~ 168 (465)
|..+|||..+.+ ...+. .+|.|.+++.+..... .+....+..+.++++++++....+.+ +|++|+||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHH
Confidence 345677777654 12222 6677888876644321 11111223344666777776665666 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC----
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP---- 244 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---- 244 (465)
..+++.+. .++++|++.+|+|+++...+...+...... +...... ..|+++|++++++
T Consensus 116 ~~~~~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~~~---~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 116 HHLIHNYT-----------EPGDEVLTADWYWGAYRVICSDTGRTLVTY----SLFDEHN---NFNHEAFQNRVNELAAK 177 (418)
T ss_dssp HHHHHHHS-----------CTTCEEEEESSCCTHHHHHHHHTTCEEEEE----CSBCTTS---SBCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----------CCCCEEEECCCCchhHHHHHHHcCCEEEEE----eeeCCCC---CcCHHHHHHHHHHhhcc
Confidence 99998664 268999999999998876554444322211 1111110 1278999998863
Q ss_pred CCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHH------HhCCEEEEeccccCCCCCCc---cccccccCCccc---EE
Q 012368 245 GKTAAVFVE-PIQGEGGIYSATKEFLQFLRDACD------DAGALLVFDEVQCGLGRTGY---LWAHEHYGIFPD---IM 311 (465)
Q Consensus 245 ~~~a~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~~g~gr~g~---~~~~~~~~~~pd---i~ 311 (465)
+..++++++ |.++++|. .++.+.+++|+++|+ +||++||+||+|.+|++.|. .+.....++.++ ++
T Consensus 178 ~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 256 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCV 256 (418)
T ss_dssp CSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEE
T ss_pred CCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEE
Confidence 445455554 62444454 458888999999999 89999999999999977664 222233345555 22
Q ss_pred --EecccCC-CccceeeEEe---CHHHHhhccCCCC----cCCCCChHHHHHHHHHHHHHhc------C--chHHHHHHH
Q 012368 312 --TLAKPLA-GGLPIGAALV---TEKVASAINYGDH----GSTFAGSPLVCNAAIAVLDKIS------N--PAFLASVSK 373 (465)
Q Consensus 312 --t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~----~~t~~~~~~~~~aa~a~L~~~~------~--~~~~~~~~~ 373 (465)
+|||.++ .|+|+||+++ ++++++.+..... +.+.+.+.+++.++.++|+... + ..+.+++++
T Consensus 257 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 336 (418)
T 3rq1_A 257 CYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRD 336 (418)
T ss_dssp EEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 7999998 5899999999 8999887754211 1223578888888888775321 0 123445555
Q ss_pred HHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 374 KGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 374 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
+.+.+.+.|+++ .+.. ..+..|.++++.+ .+..++++.|.++||.+.+++ +++||++. .++++++++++++|
T Consensus 337 ~~~~l~~~L~~~--g~~~--~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~--~~iRis~~-~~~~~~i~~~~~~l 408 (418)
T 3rq1_A 337 RADIFKQEAAQV--GLPM--LPYRGGFFITIPT-DSANAICEELKKEHIYVIALA--NGIRIAAC-GIPKCQMTGLAEKI 408 (418)
T ss_dssp HHHHHHHHHHHH--TCCC--CCCCSSSEEEEEC-TTHHHHHHHHHHTTEECEECS--SEEEEEGG-GSCHHHHTTHHHHH
T ss_pred HHHHHHHHHHhc--CCCC--CCCCceEEEEcCC-CCHHHHHHHHHhCCEEEecCC--CCeEEEEe-cCCHHHHHHHHHHH
Confidence 666666666554 2322 2223355566655 357789999999999999874 67999865 46999999999999
Q ss_pred HHHHHHhhh
Q 012368 454 CKTLPVLDS 462 (465)
Q Consensus 454 ~~~l~~~~~ 462 (465)
+++++++.+
T Consensus 409 ~~~l~~~~~ 417 (418)
T 3rq1_A 409 YNAMKSLGK 417 (418)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999987653
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=249.85 Aligned_cols=327 Identities=13% Similarity=0.074 Sum_probs=217.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCC-CCHHHHHHHHHHHhh--cC---CCeEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMY-YSIPQIELAKRLVAC--SF---ADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~--~~~~-~~~~~~~la~~l~~~--~~---~~~v~~~~sG~eA~ 168 (465)
|+++|||.++.+ .++ .+|.+++++.++++..... ...| +.....++++.++++ .+ .++|++++|+++|+
T Consensus 32 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 677899988865 344 6899999999988764221 1223 223356788888887 34 67899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH----HHHHhhcCC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI----EATRKLIQP 244 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~le~~l~~ 244 (465)
..+++++. ++++|++.+|+|+++...+...+.. .+..+|.++- .++++.
T Consensus 109 ~~~~~~~~------------~gd~Vl~~~p~y~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~l~~~--- 161 (400)
T 3asa_A 109 FRLLSFFG------------PNQTVAIQDPSYPAYLDIARLTGAK------------EIIALPCLQENAFFPEFPED--- 161 (400)
T ss_dssp HHHHHHHC------------SSCEEEEEESCCHHHHHHHHHTTCS------------EEEEEECCGGGTTCCCCCTT---
T ss_pred HHHHHHcC------------CCCEEEECCCCcHHHHHHHHHcCCc------------ceEecccchhcCcccChhhc---
Confidence 98665331 5789999999999987544332211 0112222100 011211
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccccC----CcccEEEecccCC-
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYG----IFPDIMTLAKPLA- 318 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~----~~pdi~t~sK~lg- 318 (465)
.++++|++++.++++|. .++.+++++|.++|++||+++|+||+|++|++.|. ......++ ....+.++||.+|
T Consensus 162 ~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 240 (400)
T 3asa_A 162 THIDILCLCSPNNPTGT-VLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF 240 (400)
T ss_dssp CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTT
T ss_pred cCccEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCC
Confidence 24555555443444454 46889999999999999999999999998865553 12222222 2344668999998
Q ss_pred CccceeeEEeCHHH-------HhhccCCCCcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC
Q 012368 319 GGLPIGAALVTEKV-------ASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 319 ~G~~iG~v~~~~~i-------~~~~~~~~~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
+|+|+||+++++++ ++.+.......++ +.|++++.++.++|+....++..++++++.+++.+.|++. +
T Consensus 241 ~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----g 316 (400)
T 3asa_A 241 AGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----G 316 (400)
T ss_dssp TTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----T
T ss_pred cchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----C
Confidence 79999999999887 4444321222334 5789999999999986534566777777887777777653 3
Q ss_pred Cceeeec-cceEEEEE-ec--CChHHHHHHHHH-CCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 391 HVKDVRG-LGLIIGIE-FD--VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 391 ~~~~~~~-~g~~~~i~-~~--~~~~~~~~~l~~-~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
. ....+ .|.++++. ++ .+..++.+.|++ +||.+.++. .++++||+ +..+++++++++++|++++++.
T Consensus 317 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 317 F-EVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp C-EEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC-----
T ss_pred C-eeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHHhh
Confidence 2 23333 47788888 63 245568888875 599998763 13679997 4679999999999999988754
Q ss_pred h
Q 012368 461 D 461 (465)
Q Consensus 461 ~ 461 (465)
.
T Consensus 394 ~ 394 (400)
T 3asa_A 394 S 394 (400)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=253.22 Aligned_cols=332 Identities=12% Similarity=0.049 Sum_probs=215.1
Q ss_pred CCEEEecccCcccccCC--CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-----CCCeEEe--cCCHHHH
Q 012368 97 GREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-----FADRVFF--SNTGTEA 167 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lG--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-----~~~~v~~--~~sG~eA 167 (465)
|..++||..+.+..+.+ +.+|.|.+++.++++... ...+.+.....++++.+++++ ..++|++ |+||++|
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a 103 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET-TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA 103 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCC-CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCcc-cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence 45689999988755555 578999999998876521 111112222345555555543 2578999 9999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhcCCC
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~ 245 (465)
++.++++++.+. ++++|++.+|+||++...+...+...... +.. .+.. .|+++++++++..
T Consensus 104 ~~~~~~~~~~~~---------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~~----~d~~~l~~~l~~~ 166 (394)
T 2ay1_A 104 LRQALELARMAN---------PDLRVFVSDPTWPNHVSIMNFMGLPVQTY----RYFDAETRG----VDFEGMKADLAAA 166 (394)
T ss_dssp HHHHHHHHHHHC---------TTCCEEEEESCCHHHHHHHHHHTCCEEEE----ECEETTTTE----ECHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC---------CCCEEEEcCCCChhHHHHHHHcCCceEEE----ecccccCCc----cCHHHHHHHHHhC
Confidence 999999877543 47899999999999876554443221110 110 0111 1789999998632
Q ss_pred --CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC--cccccccc-CCccc---EEEecccC
Q 012368 246 --KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAHEHY-GIFPD---IMTLAKPL 317 (465)
Q Consensus 246 --~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g--~~~~~~~~-~~~pd---i~t~sK~l 317 (465)
.++++++...++++|. .++.+++++|.++|++||+++|+||+|++|++.| .......+ ...++ +.++||.+
T Consensus 167 ~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 245 (394)
T 2ay1_A 167 KKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF 245 (394)
T ss_dssp CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT
T ss_pred CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCC
Confidence 3455554444444454 5688999999999999999999999999987653 11112211 11233 44789999
Q ss_pred C-CccceeeEEe---CHHHHhhccCC---CCcCCCC-ChHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHH
Q 012368 318 A-GGLPIGAALV---TEKVASAINYG---DHGSTFA-GSPLVCNAAIAVLDKIS--------NPAFLASVSKKGHYFKET 381 (465)
Q Consensus 318 g-~G~~iG~v~~---~~~i~~~~~~~---~~~~t~~-~~~~~~~aa~a~L~~~~--------~~~~~~~~~~~~~~l~~~ 381 (465)
+ +|+|+||+++ ++++++.+... .+..+++ .++++++++.++|+... .++..++++++.+++.+.
T Consensus 246 ~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (394)
T 2ay1_A 246 GIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGE 325 (394)
T ss_dssp TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 6999999998 66654433210 1123333 48899999988887431 133445555566666666
Q ss_pred HHHHHHcCCCceee-eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 382 LKQKLARNPHVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 382 l~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
|+++.... .+... +..|.++++.+ +...+.+.|.++||++.++ +||+++ .++++++++++++|+++
T Consensus 326 L~~~~~~~-~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~gi~v~~~-----~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 326 LRDLSGSD-RFGFVAEHRGMFSRLGA--TPEQVKRIKEEFGIYMVGD-----SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHTSS-TTTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred HHhcCCCC-CeeEEcCCceEEEeeCC--CHHHHHHHHHhCCEEecCC-----CeEEee-cCCHhhHHHHHHHHHHc
Confidence 65542110 12222 23467766655 3455666777899999763 599887 47899999999999875
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-30 Score=251.80 Aligned_cols=321 Identities=13% Similarity=0.104 Sum_probs=227.4
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-------cccCCCCCHHHHHHHHH-HHhhcCCCeEEecCCHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-------HVSNMYYSIPQIELAKR-LVACSFADRVFFSNTGTEANE 169 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-------~~~~~~~~~~~~~la~~-l~~~~~~~~v~~~~sG~eA~~ 169 (465)
-.|||+.. +.++.+|++.+++.+++.... +....++.+...+++++ ++++++.++|++++||++|+.
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKF 83 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHH
Confidence 45777633 245688999999999876532 11122344457899999 999998559999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee--CC-----CHHHHHhhc
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE--YG-----NIEATRKLI 242 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----d~~~le~~l 242 (465)
.+++.+. .++++|++.+++||+....+...+.. +..+| .+ |+++|++++
T Consensus 84 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l 139 (371)
T 2e7j_A 84 AVMHSLA-----------KKDAWVVMDENCHYSSYVAAERAGLN-------------IALVPKTDYPDYAITPENFAQTI 139 (371)
T ss_dssp HHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHTTCE-------------EEEECCCCTTTCCCCHHHHHHHH
T ss_pred HHHHHHh-----------CCCCEEEEccCcchHHHHHHHHcCCe-------------EEEeecccCCCCCcCHHHHHHHH
Confidence 9999774 16889999999999887664332211 12222 22 899999998
Q ss_pred CC----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--Eeccc
Q 012368 243 QP----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKP 316 (465)
Q Consensus 243 ~~----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~ 316 (465)
+. .++++|++++.++++|.+.+ +++|.++|++||+++|+||+|+.+ ..+ .....++ +|++ ++||+
T Consensus 140 ~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~--~~~~~~~--~di~~~s~sK~ 210 (371)
T 2e7j_A 140 EETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP--VSLKEIG--ADFIVGSGHKS 210 (371)
T ss_dssp HHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC--CCHHHHT--CSEEEEEHHHH
T ss_pred HhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC--CChhhcC--CCEEEecCCcC
Confidence 62 36788888888777777765 799999999999999999999864 222 1222333 4555 56899
Q ss_pred CCCccceeeEEeCHHHHhh-ccCCCC--cC-----CCCChHHHHHHHHHHHHHhcCchHHHHH--HHHHHHHHHHHHHHH
Q 012368 317 LAGGLPIGAALVTEKVASA-INYGDH--GS-----TFAGSPLVCNAAIAVLDKISNPAFLASV--SKKGHYFKETLKQKL 386 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~-~~~~~~--~~-----t~~~~~~~~~aa~a~L~~~~~~~~~~~~--~~~~~~l~~~l~~~~ 386 (465)
+++|.|+|++++++++++. +.+... .. +++.++..++++.++++.+.+ ++.+++ +++.+++.+.|+++
T Consensus 211 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~- 288 (371)
T 2e7j_A 211 MAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL- 288 (371)
T ss_dssp SSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc-
Confidence 9987899999999998887 765433 22 455677888888888887654 666777 77888888777664
Q ss_pred HcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeec-------C-CCCEEE-EecCCC-CcHHHHHHHHHHHHHH
Q 012368 387 ARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA-------G-KGNVVR-LVPPLI-ISEQELDQAVEILCKT 456 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~-------~-~~~~lR-i~~~~~-~t~e~i~~~l~~l~~~ 456 (465)
.+.......+.+.++++.++ +..++.+.|.++||.+.+. + ..+++| ++++.. ++++++++++++|+++
T Consensus 289 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~ 366 (371)
T 2e7j_A 289 -GIKQLGDNPHNHDLMFFHAE-VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEI 366 (371)
T ss_dssp -TCEEESSSSCCSSEEEEECH-HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred -CcEEecCCCccCceEEEECC-CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHH
Confidence 22211111114778888875 5667888888999998761 1 136799 998877 8999999999999999
Q ss_pred HHHh
Q 012368 457 LPVL 460 (465)
Q Consensus 457 l~~~ 460 (465)
++++
T Consensus 367 ~~~~ 370 (371)
T 2e7j_A 367 IEKY 370 (371)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=249.86 Aligned_cols=298 Identities=15% Similarity=0.136 Sum_probs=202.2
Q ss_pred HHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc--------------eEEEE-cCCccc
Q 012368 142 QIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT--------------EFVSF-TNSFHG 202 (465)
Q Consensus 142 ~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~--------------~ii~~-~~~yhg 202 (465)
++++++++.+.++ .++|++|+||++|+.++++.+.. +++ +||+. +|+|++
T Consensus 89 r~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-----------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~ 157 (444)
T 3if2_A 89 IDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG-----------AFVNEHSQDKESKSVDKSILLPLTPEYIG 157 (444)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE-----------EEECC-------CEEEEEEEESSSSCCGG
T ss_pred HHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC-----------CCccccccccccccccceEEEeCCCCccc
Confidence 5555555544433 68999999999999999987642 344 57665 899998
Q ss_pred CccccccccCCCCcCCCCCCCCCCceEee----------CCCHHHHHhh---cCCCCeEEEEE-cccCCCCCcccCCHHH
Q 012368 203 RTMGALALTSKEHYRSPFEPVMPGVNFVE----------YGNIEATRKL---IQPGKTAAVFV-EPIQGEGGIYSATKEF 268 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~d~~~le~~---l~~~~~a~vi~-ep~~~~~G~~~~~~~~ 268 (465)
+......... +......+..++ .-|+++|+++ +.+ ++++|++ +|.| .+|. +.+.+.
T Consensus 158 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~n-ptG~-~~~~~~ 227 (444)
T 3if2_A 158 YSDVHVEGQH-------FAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTN-PTGN-VLTDEE 227 (444)
T ss_dssp GTTCCSSSCC-------EEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCT-TTCC-CCCHHH
T ss_pred hhhcccccch-------hhccCceEEecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCC-CCCC-cCCHHH
Confidence 8754321100 001111122222 1289999998 554 4555555 5654 4444 458888
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCCCCccc---cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCC
Q 012368 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLW---AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTF 345 (465)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~---~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~ 345 (465)
+++|.++|++||++||+||+|..+ ..+..+ .....+...++.++||...+|+|+||+++++++++.+....+..++
T Consensus 228 l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~ 306 (444)
T 3if2_A 228 MAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNL 306 (444)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccC
Confidence 999999999999999999999743 111111 1122345566779999855689999999999999888755555667
Q ss_pred CChHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHHHHHHH
Q 012368 346 AGSPLVCNAAIAVLDKISNP-----AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVDAC 417 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l 417 (465)
+.++++++++.+.++..... .+.++++++.+.+.+.|.+.+...+.....+..|.++++.++ .+..++.+.|
T Consensus 307 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l 386 (444)
T 3if2_A 307 APTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERL 386 (444)
T ss_dssp SCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHH
Confidence 88889999988888743211 134445555566666665544333222223456888888884 3577899999
Q ss_pred HHCCceEeecCC---C----------CEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 418 RDSGLLVLTAGK---G----------NVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 418 ~~~Gv~v~~~~~---~----------~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.++||.+.++.. + +++||+++. ++++|++++++|.++++++.++
T Consensus 387 ~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~~ 443 (444)
T 3if2_A 387 KAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYDN 443 (444)
T ss_dssp HHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHcc
Confidence 999999987531 1 579999886 9999999999999999887754
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=241.37 Aligned_cols=332 Identities=13% Similarity=0.106 Sum_probs=227.0
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc----cCCCC---CHHHHHHHHHHHhhcCC---CeEEecCCHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----SNMYY---SIPQIELAKRLVACSFA---DRVFFSNTGT 165 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~----~~~~~---~~~~~~la~~l~~~~~~---~~v~~~~sG~ 165 (465)
+|+++++|..+.. ++.+|.|++++.+++++.... ...+. .....+++++|+++++. ++|++++||+
T Consensus 25 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 6777888877654 468899999999998763211 11121 23467899999999885 8999999999
Q ss_pred HHHHHHHHHHHHH-hhhcCCCCCCCCceEEEEcCCcccCcccc---c-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHh
Q 012368 166 EANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGA---L-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240 (465)
Q Consensus 166 eA~~~al~~a~~~-t~~~~~~~~~~~~~ii~~~~~yhg~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 240 (465)
+|+..+++.++.. . .++++|++.+++||+..... . ..+..... .+...+.. .|+++|++
T Consensus 101 ~a~~~~~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~----~d~~~l~~ 164 (420)
T 1t3i_A 101 EAINLVAYSWGMNNL--------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKF----VQLDEQES----FDLEHFKT 164 (420)
T ss_dssp HHHHHHHHHTHHHHC--------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEE----ECBCTTSS----BCHHHHHH
T ss_pred HHHHHHHHHhhhccc--------CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEE----eccCCCCC----cCHHHHHH
Confidence 9999999987321 1 15789999999999964211 1 11111110 11111110 38999999
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCC
Q 012368 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLA 318 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg 318 (465)
++++ ++++|++++.++++|.+.+ +++|.++|++||++||+||+|+. |... +....++ +|++++ +|.++
T Consensus 165 ~l~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~~--~~~~~~~--~di~~~s~sK~~~ 234 (420)
T 1t3i_A 165 LLSE-KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSA-PHYP--LDVQLID--CDWLVASGHKMCA 234 (420)
T ss_dssp HCCT-TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC--CCHHHHT--CSEEEEEGGGTTS
T ss_pred hhCC-CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhcc-CCcc--CchhhcC--CCEEEEehhhhcC
Confidence 9975 5788888888777787765 89999999999999999999973 3221 1222233 677755 59665
Q ss_pred CccceeeEEeCHHHHhhccCCCCcC--------------------CCCChHHHHHHHHH-HHHHhcC---chHHHHHHHH
Q 012368 319 GGLPIGAALVTEKVASAINYGDHGS--------------------TFAGSPLVCNAAIA-VLDKISN---PAFLASVSKK 374 (465)
Q Consensus 319 ~G~~iG~v~~~~~i~~~~~~~~~~~--------------------t~~~~~~~~~aa~a-~L~~~~~---~~~~~~~~~~ 374 (465)
+ ..+|++++++++++.+.+..... +.+.+++.+.++++ +++.+.+ +.+.++.+++
T Consensus 235 ~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (420)
T 1t3i_A 235 P-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL 313 (420)
T ss_dssp C-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4 23899999999998886543221 23455566665554 6776543 3445555555
Q ss_pred HHHHHHHHHHHHHcCCCceeeec------cceEEEEEec-CChHHHHHHHHHCCceEeec-----------CCCCEEEEe
Q 012368 375 GHYFKETLKQKLARNPHVKDVRG------LGLIIGIEFD-VSATPVVDACRDSGLLVLTA-----------GKGNVVRLV 436 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~------~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~-----------~~~~~lRi~ 436 (465)
.+++.+.|+ +.+.+..... .|.++.+.++ .+..++.+.|.++||.+.++ +..+++|++
T Consensus 314 ~~~l~~~L~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis 389 (420)
T 1t3i_A 314 THYLWQGLG----QIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARAS 389 (420)
T ss_dssp HHHHHHHHH----TCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHH----hCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEe
Confidence 555555554 4433332222 3778888774 35678899999999999876 213789999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 437 PPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++..++++++++++++|+++++.+++
T Consensus 390 ~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 390 LYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99889999999999999999987753
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-28 Score=238.65 Aligned_cols=327 Identities=13% Similarity=0.068 Sum_probs=227.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC---CeEEecCCHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKF 174 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~v~~~~sG~eA~~~al~~ 174 (465)
+.|+|+.+ .++.+|++.+|+.+++.. ++ .....+...++++++++.++. +++++++||++|+..+++.
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HR-SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--cc-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 45777643 245788999888776542 11 111134578899999998873 5699999999999999997
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCccc--CccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC-CCCeEEEE
Q 012368 175 ARKFQRHSNPDSKEPATEFVSFTNSFHG--RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PGKTAAVF 251 (465)
Q Consensus 175 a~~~t~~~~~~~~~~~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~a~vi 251 (465)
+. .++++|++.+|+||+ +...+...+..... .+...+. ..|+++|+++++ ..++++|+
T Consensus 91 l~-----------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~----~~d~~~l~~~l~~~~~~~~v~ 151 (386)
T 2dr1_A 91 GV-----------SKGGKVLVTIIGAFGKRYKEVVESNGRKAVV----LEYEPGK----AVKPEDLDDALRKNPDVEAVT 151 (386)
T ss_dssp HS-----------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEE----EECCTTC----CCCHHHHHHHHHHCTTCCEEE
T ss_pred hh-----------cCCCeEEEEcCCchhHHHHHHHHHhCCceEE----EecCCCC----CCCHHHHHHHHhcCCCCcEEE
Confidence 64 158899999999998 43222222211110 0111110 148999999994 23567777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCCccceeeEEeC
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT 329 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~ 329 (465)
+++.++++|.+.+ +++|.++|++||++||+||+|+.+ ... ..... ..+|++++ +|+++++.++|+++++
T Consensus 152 ~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~--~~~~~--~~~di~~~s~sK~~~~~~g~G~~~~~ 222 (386)
T 2dr1_A 152 ITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GAD--IKFDK--WGLDVVFSSSQKAFGVPPGLAIGAFS 222 (386)
T ss_dssp EESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TBC--CCTTT--TTCSEEEEETTSTTCCCSSCEEEEEC
T ss_pred EEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Ccc--ccccc--cCCcEEEEeccccccCCCceEEEEEC
Confidence 7776677777655 899999999999999999998743 221 12222 23577755 5999976569999999
Q ss_pred HHHHhhccCC------------------CCcCCCCChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHH
Q 012368 330 EKVASAINYG------------------DHGSTFAGSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLA 387 (465)
Q Consensus 330 ~~i~~~~~~~------------------~~~~t~~~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~ 387 (465)
+++++.+.+. ....+++.++++++++.++|+.+.+. +..++++++.+++.+.|+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-- 300 (386)
T 2dr1_A 223 ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-- 300 (386)
T ss_dssp HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--
Confidence 9988776421 12345677889999999999876433 56677777777777777664
Q ss_pred cCCCceee-eccceEEEEEec--CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 388 RNPHVKDV-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 388 ~~~~~~~~-~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+...... ...+.++++.++ .+..++.+.|.++||.+.++. .++++|++++..++++++++++++|+++++++.
T Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 301 GLDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp TCCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 22211110 114778888874 357789999999999998863 237899999988999999999999999998875
Q ss_pred hc
Q 012368 462 SN 463 (465)
Q Consensus 462 ~~ 463 (465)
.+
T Consensus 381 ~~ 382 (386)
T 2dr1_A 381 KQ 382 (386)
T ss_dssp HH
T ss_pred CC
Confidence 43
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=231.87 Aligned_cols=314 Identities=15% Similarity=0.091 Sum_probs=216.8
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
+.+++|||.+|. +++| .+|.|.+++.+.+... ..|+++...+++++++++++ .++|++|+|+++++..+++
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARI----NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGT----TSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhh----ccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence 456789999885 4677 7799999999887653 23455668899999999987 5699999999999999888
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.+ ++++|++.+|+|+++...+...+..... .+...+.. .|+++|+++. +...++++.
T Consensus 87 ~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~----v~~~~~~~----~d~~~l~~~~--~~~~v~i~~ 143 (337)
T 3p1t_A 87 EF-------------SSMRFVTAWPGFDGYRARIAVSGLRHFE----IGLTDDLL----LDPNDLAQVS--RDDCVVLAN 143 (337)
T ss_dssp HS-------------TTSEEEEESSSCSHHHHHHTTSCCEEEE----ECBCTTSS----BCHHHHTTCC--TTEEEEEES
T ss_pred hc-------------CCCeEEEeCCCcHHHHHHHHHcCCEEEE----ecCCCCCC----CCHHHHHhhc--CCCEEEEeC
Confidence 65 1789999999999877554333221110 01111111 2788988873 234455555
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHHH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKV 332 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i 332 (465)
|.|+ +|.+.+ ++++.++|+++++ +|+||+|.+|+..+.. .....+....+.++||.++ .|+|+||+++++++
T Consensus 144 p~np-tG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~-~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~ 216 (337)
T 3p1t_A 144 PSNP-TGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRAR-GLAYGENELVFRSFSKSYGLAGLRLGALFGPSEL 216 (337)
T ss_dssp SCTT-TCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSS-CCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHH
T ss_pred CCCC-CCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccccc-ccccCCCEEEEeeCchhccCcchheEEEEeCHHH
Confidence 5554 455554 6678888889887 5669999987644432 1122233344568999998 69999999999999
Q ss_pred HhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 333 ~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
++.+... ..+++.+++++.++.++|+... .++..+++.++.+++.+.|++ ++ +...++.|.++++... +..
T Consensus 217 ~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~-~~~ 288 (337)
T 3p1t_A 217 IAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRG----LG-YRVASSEANFVLVENA-AGE 288 (337)
T ss_dssp HHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH----TT-CCBCCCSSSEEEEECT-TTH
T ss_pred HHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----Cc-CEECCCCCeEEEEEcC-CHH
Confidence 9988743 3456788899988888886321 123344444444555544444 33 2334566788887763 346
Q ss_pred HHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.+.+.|.++||.+.++.. ++++|++++ +++++++++++|++++
T Consensus 289 ~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 289 RTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp HHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 788889999999988642 478999865 7899999999988764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=240.38 Aligned_cols=332 Identities=16% Similarity=0.130 Sum_probs=223.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHh--hcccccCC-------CCCHHHHHHHHHHHhhcC--CCeEEecCCH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQAN--VLTHVSNM-------YYSIPQIELAKRLVACSF--ADRVFFSNTG 164 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~--~~~~~~~~-------~~~~~~~~la~~l~~~~~--~~~v~~~~sG 164 (465)
++.-|||+.++ |+.+|.|++++.+++. ........ ...+...++++++++.++ .++|++++||
T Consensus 21 ~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg 94 (423)
T 3lvm_A 21 KLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGA 94 (423)
T ss_dssp CSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSH
T ss_pred CCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCh
Confidence 55678887654 4688999999999877 32111100 112336789999999988 4599999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhc
Q 012368 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 242 (465)
++|++.+++.+..+.. .++++|++.+++|++.......+ .+.... +.+...+.. .|+++|++++
T Consensus 95 t~a~~~a~~~l~~~~~-------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~~----~d~~~l~~~i 160 (423)
T 3lvm_A 95 TESDNLAIKGAANFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGFEVT---YLAPQRNGI----IDLKELEAAM 160 (423)
T ss_dssp HHHHHHHHHHHHHHHT-------TTCCEEEEETTSCHHHHHHHHHHHHTTCEEE---EECCCTTSC----CCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhc-------cCCCEEEECCccchHHHHHHHHHHHcCCEEE---EeccCCCCc----cCHHHHHHhc
Confidence 9999999997764332 14889999999999876544322 111110 011111111 1899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCc
Q 012368 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGG 320 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G 320 (465)
++ ++++|+++++++++|.+.+ +++|+++|++||++||+||+|+. +.. ........+|++++| |.++ +
T Consensus 161 ~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~~~~~~~di~~~s~sK~~g-~ 229 (423)
T 3lvm_A 161 RD-DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PIDLSQLKVDLMSFSGHKIYG-P 229 (423)
T ss_dssp CT-TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCCTTTSCCSEEEEESTTTTS-C
T ss_pred CC-CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcChhhcCCCEEEechHHhcC-C
Confidence 75 6788888888877887765 89999999999999999999863 221 122223347777655 9654 3
Q ss_pred cceeeEEeCHHHHhhccCCCC-------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce
Q 012368 321 LPIGAALVTEKVASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK 393 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~-------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 393 (465)
.++|++++++++++.+.+... ..+.+.++..++++.++++.+.+. .+++.+....+++.|.+.+.+++.+.
T Consensus 230 ~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~ 307 (423)
T 3lvm_A 230 KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE--MATEMERLRGLRNRLWNGIKDIEEVY 307 (423)
T ss_dssp SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 459999999887777765322 223455778888888888765431 34444444444455555555555433
Q ss_pred eeecc----ceEEEEEec-CChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHH
Q 012368 394 DVRGL----GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQEL 446 (465)
Q Consensus 394 ~~~~~----g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i 446 (465)
..... +.++.+.+. .+..++.+.|.+ |.+.++.. ++++|++++..++++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i 385 (423)
T 3lvm_A 308 LNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEI 385 (423)
T ss_dssp EESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHH
T ss_pred EeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHH
Confidence 33222 356666663 456777877766 66655321 27899999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 012368 447 DQAVEILCKTLPVLDS 462 (465)
Q Consensus 447 ~~~l~~l~~~l~~~~~ 462 (465)
++++++|+++++++++
T Consensus 386 ~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 386 DYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987754
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=243.67 Aligned_cols=329 Identities=13% Similarity=0.042 Sum_probs=212.8
Q ss_pred CEEEecccCcccccCCCCC--HHHHHHHHHHHhhcc-cc--cCCCCCHHHHHHHHHHHhhcC----CC--eEEecCCHHH
Q 012368 98 REYLDLSSGIAVNALGHGD--ADWIKAVVDQANVLT-HV--SNMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTE 166 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~--p~v~~a~~~~~~~~~-~~--~~~~~~~~~~~la~~l~~~~~----~~--~v~~~~sG~e 166 (465)
..+|||..|.+..+.|+.+ |.|++|+.++++... +. ...+..+.++++++++....+ ++ +|++|+||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 3578999987666677765 899999999887621 11 111223446666666655443 56 8999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----C---CHHHHH
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----G---NIEATR 239 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~le 239 (465)
|+..+++++.... ++++|++.+|+|+++...+...+... ..+|. + |+++|+
T Consensus 129 al~~~~~~~~~~~---------~gd~Vlv~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~d~~~l~ 186 (420)
T 4f4e_A 129 ALKIGADFLRTLN---------PKAKVAISDPSWENHRALFDMAGFEV-------------VAYPYYDAKTNGVNFDGML 186 (420)
T ss_dssp HHHHHHHHHHHHC---------TTCCEEEEESCCHHHHHHHHHTTCCE-------------EEEECEETTTTEECHHHHH
T ss_pred HHHHHHHHHHHhC---------CCCEEEEeCCCcHhHHHHHHHcCCeE-------------EEeeeeccccCccCHHHHH
Confidence 9999987554322 68899999999999876554443222 22222 1 899999
Q ss_pred hhcCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--ccccc----ccCCcccEE
Q 012368 240 KLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHE----HYGIFPDIM 311 (465)
Q Consensus 240 ~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~----~~~~~pdi~ 311 (465)
+.++. .++++++++..++++|. .++.+.+++|.++|++||+++|+||+|.+|++.+. ..... ..+....+.
T Consensus 187 ~~l~~~~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 265 (420)
T 4f4e_A 187 AALNGYEPGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSS 265 (420)
T ss_dssp HHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEE
Confidence 99972 34566666554444554 45888999999999999999999999999876541 11111 123333445
Q ss_pred EecccCC-CccceeeEEe---CHHHHhhc----cCCCCcCCCCChHHHHHHHHHHHHHhc--------CchHHHHHHHHH
Q 012368 312 TLAKPLA-GGLPIGAALV---TEKVASAI----NYGDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLASVSKKG 375 (465)
Q Consensus 312 t~sK~lg-~G~~iG~v~~---~~~i~~~~----~~~~~~~t~~~~~~~~~aa~a~L~~~~--------~~~~~~~~~~~~ 375 (465)
+|||.++ .|+|+||+++ ++++++.+ .......+.+.+++++.++.++|+... -+++.++++++.
T Consensus 266 S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 345 (420)
T 4f4e_A 266 SFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMR 345 (420)
T ss_dssp ECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999 5999999864 45655432 211113344567778887777776321 023344444455
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+.+.+.|+++....+.....+..|.+.++.+ +...+.+.|.++||++.+++ |++++ ..+++++++++++|++
T Consensus 346 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~gI~v~~~~-----Ris~~-~~~~~~i~~~~~~l~~ 417 (420)
T 4f4e_A 346 NGLVERLKAAGIERDFSFINAQRGMFSYSGL--TSAQVDRLREEFGIYAVSTG-----RICVA-ALNTRNLDVVANAIAA 417 (420)
T ss_dssp HHHHHHHHHTTCSSCCTHHHHSCSSEEECCC--CHHHHHHHHHHHCEECCTTS-----EEEGG-GCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCceeECCCccEEEEeCC--CHHHHHHHHHhCCEEecCCC-----eEEEe-cCCHHHHHHHHHHHHH
Confidence 5555555443211122222234566666554 45566677778999998753 88875 3477789999999998
Q ss_pred HH
Q 012368 456 TL 457 (465)
Q Consensus 456 ~l 457 (465)
++
T Consensus 418 ~l 419 (420)
T 4f4e_A 418 VL 419 (420)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-27 Score=234.32 Aligned_cols=328 Identities=14% Similarity=0.125 Sum_probs=221.2
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcc-cccCCC-----CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNMY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEA 170 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~~~-----~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~ 170 (465)
.|||+.++ |+.+|+|++|+.+++.+.. .....+ ......+++++++++++ .++|++++||++|+..
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 57887664 4689999999999987521 100000 12336789999999988 4699999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc--cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
+++.+..... .++++|++.+++||+...... ...+..... .+...+. ..|+++|++++++ +++
T Consensus 77 ~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~i~~-~~~ 141 (384)
T 1eg5_A 77 ILKTVAETFE-------KRKRTIITTPIEHKAVLETMKYLSMKGFKVKY---VPVDSRG----VVKLEELEKLVDE-DTF 141 (384)
T ss_dssp HHHHHHHHTT-------TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEE---CCBCTTS----CBCHHHHHHHCCT-TEE
T ss_pred HHHhhhhhcc-------CCCCEEEECCCCchHHHHHHHHHHhcCCEEEE---EccCCCC----ccCHHHHHHHhCC-CCe
Confidence 9998763210 157899999999998754432 111211111 1111111 1389999999975 577
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCC-ccce
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAG-GLPI 323 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~-G~~i 323 (465)
+|++++.++++|.+.+ +++|.++|++|| ++||+||+|+ +|... .... ...+|++++| |.++. | +
T Consensus 142 ~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s~sK~~g~~G--~ 210 (384)
T 1eg5_A 142 LVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLE--KLEVDYASFSAHKFHGPKG--V 210 (384)
T ss_dssp EEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCT--TTCCSEEEEEGGGGTSCTT--C
T ss_pred EEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCch--hcCCCEEEecHHHhcCCCc--e
Confidence 7777777777777665 899999999999 9999999997 64321 1222 2246777655 98764 5 7
Q ss_pred eeEEeCHHH--HhhccCCC---CcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 324 GAALVTEKV--ASAINYGD---HGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 324 G~v~~~~~i--~~~~~~~~---~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
|++++++++ ...+.... ...+++.++++++++.++|+.+.+ ++..++++++.+++.+.|++ .+ +....
T Consensus 211 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~ 285 (384)
T 1eg5_A 211 GITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN----LG-AHIIT 285 (384)
T ss_dssp EEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT----TT-CEECS
T ss_pred EEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC----CC-eEEeC
Confidence 999999876 33332211 124567889999999999987532 34455555666666655544 22 22111
Q ss_pred ----ccceEEEEEec-CChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHHHHH
Q 012368 397 ----GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 397 ----~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i~~~ 449 (465)
..+.++++.+. .+..++.+.|.++||.+.++.. .+++||+++..+++++++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~ 365 (384)
T 1eg5_A 286 PLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYF 365 (384)
T ss_dssp CTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHH
T ss_pred CcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHH
Confidence 13456666663 4577899999999999987420 26899998888899999999
Q ss_pred HHHHHHHHHHhhhc
Q 012368 450 VEILCKTLPVLDSN 463 (465)
Q Consensus 450 l~~l~~~l~~~~~~ 463 (465)
+++|+++++++++.
T Consensus 366 ~~~l~~~~~~~~~~ 379 (384)
T 1eg5_A 366 LKKIEEILSFLDLT 379 (384)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=233.43 Aligned_cols=331 Identities=18% Similarity=0.107 Sum_probs=232.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhc-ccccC--C---CCCHHHHHHHHHHHhhcC--CCeEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN--M---YYSIPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~-~~~~~--~---~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA 167 (465)
+|..|+|+.+ .|+.+|.|.+++.+++... ..... . ...+...+++++++++++ .++|++++||+++
T Consensus 27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 5788999754 3578899999999998752 11110 0 112446789999999998 4689999999999
Q ss_pred HHHHHHHHHHHh---hhcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC
Q 012368 168 NEAAIKFARKFQ---RHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 168 ~~~al~~a~~~t---~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (465)
+..+++.++.+. . +++++|+.++.+|+....... +.... .....+..+|. +++|+++++
T Consensus 101 l~~al~~~~~~~~~~~--------~gd~vii~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~v~~--~~~l~~~i~ 163 (416)
T 1qz9_A 101 LFKVLSAALRVQATRS--------PERRVIVTETSNFPTDLYIAEGLADML-------QQGYTLRLVDS--PEELPQAID 163 (416)
T ss_dssp HHHHHHHHHHHHHHHS--------TTCCEEEEETTSCHHHHHHHHHHHHHH-------CSSCEEEEESS--GGGHHHHCS
T ss_pred HHHHHHhhcccccccC--------CCCcEEEEcCCCCCchHHHHHHHHHHh-------cCCceEEEeCc--HHHHHHHhC
Confidence 999998775331 1 466778888878875433221 10000 00112344544 788999997
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCCcc
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGL 321 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~ 321 (465)
+ ++++|++++.++++|.+.+ +++|.++|++||+++|+||+|+ +|... .....+ .+|++++ +|++++|.
T Consensus 164 ~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g~ 233 (416)
T 1qz9_A 164 Q-DTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGGP 233 (416)
T ss_dssp T-TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCCT
T ss_pred C-CceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCCC
Confidence 5 6788888888877887765 8999999999999999999997 44332 122222 3677765 59998888
Q ss_pred ce-eeEEeCHHHHhhccCCCCc-----------------------CCCCChHHHHHHHHHHHHHhcC---chHHHHHHHH
Q 012368 322 PI-GAALVTEKVASAINYGDHG-----------------------STFAGSPLVCNAAIAVLDKISN---PAFLASVSKK 374 (465)
Q Consensus 322 ~i-G~v~~~~~i~~~~~~~~~~-----------------------~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~ 374 (465)
++ |++++++++++.+.+...+ ...+.++.+++++.++|+.+.+ +++.++++++
T Consensus 234 ~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (416)
T 1qz9_A 234 GSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLAL 313 (416)
T ss_dssp TCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88 9999999987776542111 1224678888888889987753 3567778888
Q ss_pred HHHHHHHHHHHHH--cCCCceee--eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecC-CCCcHHHHHHH
Q 012368 375 GHYFKETLKQKLA--RNPHVKDV--RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPP-LIISEQELDQA 449 (465)
Q Consensus 375 ~~~l~~~l~~~~~--~~~~~~~~--~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~-~~~t~e~i~~~ 449 (465)
.+++.+.|.+++. .+...... ...+.++++.+. +..++.+.|.++||.+...+. +++|++++ +.+++++++++
T Consensus 314 ~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~gi~~~~~~~-~~lRis~~~~~~t~~~i~~~ 391 (416)
T 1qz9_A 314 TDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-EGYAVIQALIDRGVIGDYREP-RIMRFGFTPLYTTFTEVWDA 391 (416)
T ss_dssp HHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-THHHHHHHHHTTTEECEEETT-TEEEEECCTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC-CHHHHHHHHHhCCcEeccCCC-CeEEEeCcccCCCHHHHHHH
Confidence 8888888876532 22211111 023667788774 367899999999999876544 78999987 58899999999
Q ss_pred HHHHHHHHHHhh
Q 012368 450 VEILCKTLPVLD 461 (465)
Q Consensus 450 l~~l~~~l~~~~ 461 (465)
+++|++++++..
T Consensus 392 ~~~l~~~~~~~~ 403 (416)
T 1qz9_A 392 VQILGEILDRKT 403 (416)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhccc
Confidence 999999987643
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=251.25 Aligned_cols=336 Identities=12% Similarity=0.013 Sum_probs=214.1
Q ss_pred ccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHHhhc-C------CCeEEecCCHHHHHHHHHHHHHH--Hh
Q 012368 110 NALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVACS-F------ADRVFFSNTGTEANEAAIKFARK--FQ 179 (465)
Q Consensus 110 ~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~-~------~~~v~~~~sG~eA~~~al~~a~~--~t 179 (465)
...++.+|++++++.+++....++ +..+....++++++.+.+.+ + .++|++|+||++|+..+++.+.. ..
T Consensus 111 g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~ 190 (533)
T 3f6t_A 111 TELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL 190 (533)
T ss_dssp HTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcc
Confidence 345567889998888887653332 22233445777777776551 2 37999999999999999986322 12
Q ss_pred hhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE-EcccCCC
Q 012368 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF-VEPIQGE 258 (465)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi-~ep~~~~ 258 (465)
.+++.|++.+|+|+++.......+..............+... |+++|++++++ ++++|+ +.|.|++
T Consensus 191 --------~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----d~~~l~~~l~~-~~k~v~l~~p~NPt 257 (533)
T 3f6t_A 191 --------KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEI----EPNEIEKLKDP-SIKALIVVNPTNPT 257 (533)
T ss_dssp --------CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEE----CHHHHHHHSCT-TEEEEEEESSCTTT
T ss_pred --------CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCC----CHHHHHHHhCC-CCeEEEEeCCCCCC
Confidence 158899999999998876554433221111000000011111 78999999975 455555 4565544
Q ss_pred CCcccCCHHHHHHHHHHHH-HhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHH-----
Q 012368 259 GGIYSATKEFLQFLRDACD-DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK----- 331 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~----- 331 (465)
|. +++.+.+++|.++|+ +||+++|+||+|.+|...+........+....+.||||.+| .|+|+||++++++
T Consensus 258 -G~-~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~ 335 (533)
T 3f6t_A 258 -SK-EFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDD 335 (533)
T ss_dssp -CB-CCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHH
T ss_pred -cc-ccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHH
Confidence 43 458888999999999 68999999999998855333222222234466779999998 5999999999876
Q ss_pred HHhhc--------------------------------cCCCCcCCCCChHHHHHH----HHHHHHH----hcCchHHHHH
Q 012368 332 VASAI--------------------------------NYGDHGSTFAGSPLVCNA----AIAVLDK----ISNPAFLASV 371 (465)
Q Consensus 332 i~~~~--------------------------------~~~~~~~t~~~~~~~~~a----a~a~L~~----~~~~~~~~~~ 371 (465)
+++.+ .......+.+.+++.+.+ +.++|.. -....+.+++
T Consensus 336 li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~ 415 (533)
T 3f6t_A 336 NIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIA 415 (533)
T ss_dssp HHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHH
T ss_pred HHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 54433 233444556677777776 3444420 0123344444
Q ss_pred HHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec------------------CChHHHHHHHH-HCCceEeecC----
Q 012368 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD------------------VSATPVVDACR-DSGLLVLTAG---- 428 (465)
Q Consensus 372 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~------------------~~~~~~~~~l~-~~Gv~v~~~~---- 428 (465)
++.....++.|.+.+. .+.....+..|.++++.+. .+..+++..|+ ++||++.|+.
T Consensus 416 ~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~ 494 (533)
T 3f6t_A 416 RKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGA 494 (533)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECS
T ss_pred HHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCC
Confidence 4444444444544443 4432223445667777763 13456666665 6799998753
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 429 KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 429 ~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
..+++|+++. .++++++++++++|.++++++.+
T Consensus 495 ~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 495 KPGELRVSQA-NLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp STTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHH
Confidence 1368999874 36899999999999999987653
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=236.32 Aligned_cols=332 Identities=15% Similarity=0.100 Sum_probs=220.8
Q ss_pred EEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHH
Q 012368 91 KLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANE 169 (465)
Q Consensus 91 ~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~ 169 (465)
.++|.+++.+.++...++..+++|..++..+.+ .++++++++.++ .+.++|++||++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-------------------~~~~~~l~~~~~~~~~v~~~~sgt~a~~ 65 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-------------------NDLLSNLKTVYNAEAAVIIPGSGTYGME 65 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-------------------HHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-------------------HHHHHHHHHHhCCCCEEEEcCChhHHHH
Confidence 468889999999887666666778777654332 344556666666 467889999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc-cCCCCcCCCCCCCCC----Cc-eEeeCCCHHHHHhhcC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMP----GV-NFVEYGNIEATRKLIQ 243 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~----~~-~~~~~~d~~~le~~l~ 243 (465)
.+++.+. ++++||+++++||+.....+.. .+... ...+.+... +. ......|+++++++++
T Consensus 66 ~~~~~~~------------~gd~vi~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~ 132 (379)
T 3ke3_A 66 AVARQLT------------IDEDCLIIRNGWFSYRWTQILEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIK 132 (379)
T ss_dssp HHHHHHC------------TTCEEEEEECSHHHHHHHHHHHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHH
T ss_pred HHHHhCC------------CCCeEEEEeCCchhHHHHHHHHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHh
Confidence 9886432 5889999999999875432221 11100 000000000 00 0011358999999995
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccce
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~i 323 (465)
..++++|++..+++..|.+ .+.+++++|+++|++||+++|+||+++ | +..+....+++.+.+.+++|+++++.++
T Consensus 133 ~~~~~~v~~~~~~~~~G~~-~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~~g~ 207 (379)
T 3ke3_A 133 EDKSAIVYAPHVETSSGII-LSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSSTPCA 207 (379)
T ss_dssp HHTCSEEEEESEETTTTEE-CCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSCCCE
T ss_pred hcCCcEEEEEeecCCCcee-CCHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCCCce
Confidence 3346677777766666754 578899999999999999999999987 3 3344555566655555566999887789
Q ss_pred eeEEeCHHHHhhccCCC---C-------------------cCCCCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHH
Q 012368 324 GAALVTEKVASAINYGD---H-------------------GSTFAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYF 378 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~---~-------------------~~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l 378 (465)
|++++++++++.+.+.. . ..+++.++..++++.++|+.+.++ +..++.+++.+++
T Consensus 208 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l 287 (379)
T 3ke3_A 208 GLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRV 287 (379)
T ss_dssp EEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 99999999888775421 0 012366788888888999877543 5566667777777
Q ss_pred HHHHHHHHHcCCCceee-eccceEEEEEecCChHHHHHHHHHCCceEeecCC--------CCEEEEecCCCCcHHHHHHH
Q 012368 379 KETLKQKLARNPHVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK--------GNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~lRi~~~~~~t~e~i~~~ 449 (465)
++.|+++ .+...... ...+.+..+..+.....+.+.|.++||.+.++.. ++.+||+++..+|++||+++
T Consensus 288 ~~~l~~~--g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~ 365 (379)
T 3ke3_A 288 RKVLTDK--GIESVAAEGFEAPGVVVSYTERDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGT 365 (379)
T ss_dssp HHHHHHT--TCCBSBCTTCBCSSEEEEECSCHHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHH
T ss_pred HHHHHHc--CCEecCCccccCceEEEEccCCcchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHH
Confidence 7777654 22211111 1123334444322222236778899999987631 47899999999999999999
Q ss_pred HHHHHHHHHHhh
Q 012368 450 VEILCKTLPVLD 461 (465)
Q Consensus 450 l~~l~~~l~~~~ 461 (465)
+++|+++++++.
T Consensus 366 ~~~l~~~l~~~~ 377 (379)
T 3ke3_A 366 VERFEKALDEVL 377 (379)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=237.62 Aligned_cols=333 Identities=11% Similarity=0.055 Sum_probs=210.7
Q ss_pred CEEEecccCcccccCCCCC--HHHHHHHHH-HHhhccc-ccC--CCCCHHHHHHHHHHHhhcC----CC--eEEecCCHH
Q 012368 98 REYLDLSSGIAVNALGHGD--ADWIKAVVD-QANVLTH-VSN--MYYSIPQIELAKRLVACSF----AD--RVFFSNTGT 165 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~--p~v~~a~~~-~~~~~~~-~~~--~~~~~~~~~la~~l~~~~~----~~--~v~~~~sG~ 165 (465)
..++||..|.+..+.|+.+ |.|++|+.+ ++..... .+. .+..+.++++++++....+ .+ +|++|+||+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 3479999887555566655 899999999 8765211 111 1122335566666654433 56 899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC--CCCceEeeCCCHHHHHhhcC
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV--MPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l~ 243 (465)
+|+..+++++.... ++++|++.+|+|+++...+...+...... +. ..+... |+++|+++++
T Consensus 106 ~a~~~~~~~~~~~~---------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~----d~~~l~~~l~ 168 (397)
T 3fsl_A 106 GALKVGADFLKRYF---------PESGVWVSDPTWENHVAIFAGAGFEVSTY----PWYDEATNGV----RFNDLLATLK 168 (397)
T ss_dssp HHHHHHHHHHHHHC---------TTCCEEEESSCCHHHHHHHHHTTCCEEEE----CCEETTTTEE----CHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC---------CCCeEEEeCCCchhHHHHHHHcCCceEEE----eeeeccCCcC----cHHHHHHHHH
Confidence 99999987554332 58899999999999875554433221111 11 011111 8999999997
Q ss_pred C--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC--ccccc----cccCCcccEEEecc
Q 012368 244 P--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAH----EHYGIFPDIMTLAK 315 (465)
Q Consensus 244 ~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g--~~~~~----~~~~~~pdi~t~sK 315 (465)
. .+++++++...++++|. .++.+.+++|.++|++||++||+||+|.+|...+ ..... +..+....+.++||
T Consensus 169 ~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 169 TLQAGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp TCCTTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred hCCCCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence 2 34555555444444444 5688889999999999999999999999886542 11111 12333445568999
Q ss_pred cCC-CccceeeEEe---CHHHHhhccCC----CCcCCCCChHHHHHHHHHHHHHh------c--CchHHHHHHHHHHHHH
Q 012368 316 PLA-GGLPIGAALV---TEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKI------S--NPAFLASVSKKGHYFK 379 (465)
Q Consensus 316 ~lg-~G~~iG~v~~---~~~i~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~------~--~~~~~~~~~~~~~~l~ 379 (465)
.++ .|+|+||+++ ++++++.+... ....+.+.+++++.++.++|+.. . .++..++++++.+++.
T Consensus 248 ~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 327 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELV 327 (397)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 5999999974 45555433211 01233445677777777666521 0 1234555566666666
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+.|++.....+.....+..|.++++.+ +...+.+.|.++||.+.+++ ||+++ .+++++|++++++|+++
T Consensus 328 ~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~-----Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 328 KVLSTEMPERNFDYLLNQRGMFSYTGL--SAAQVDRLREEFGVYLIASG-----RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp HHHHHHCTTSCCTHHHHCCSSEEECCC--CHHHHHHHHHTTCEECCTTC-----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCceeecCCceEEEecCC--CHHHHHHHHHhCCEEECCCC-----eEEEE-ecCHhhHHHHHHHHHhh
Confidence 666554211122222233466666554 45556677778999998754 88875 34677899999999875
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=238.57 Aligned_cols=322 Identities=16% Similarity=0.082 Sum_probs=222.5
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CC-eEEecCCHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAI 172 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~-~v~~~~sG~eA~~~al 172 (465)
+++.|+|..+. ++.+|++.+|+.+++.. ++ .....+...++++++++.++ .+ +|++|+||++|+..++
T Consensus 32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HL-DPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred CccceeccCCC------CCCCHHHHHHHhccccc--cc-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence 34568875432 45789999998876543 11 11122447889999999887 45 8999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCccc--CccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHG--RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
+.+. .++++|++.+|+||+ +...+...+.... . .+...+. ..|+++|++++++.++++|
T Consensus 103 ~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~-~---v~~~~~~----~~d~~~l~~~l~~~~~~~v 163 (393)
T 1vjo_A 103 ANAV-----------EPGDVVLIGVAGYFGNRLVDMAGRYGADVR-T---ISKPWGE----VFSLEELRTALETHRPAIL 163 (393)
T ss_dssp HHHC-----------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE-E---EECCTTC----CCCHHHHHHHHHHHCCSEE
T ss_pred Hhcc-----------CCCCEEEEEcCChhHHHHHHHHHHcCCceE-E---EecCCCC----CCCHHHHHHHHhhCCceEE
Confidence 9774 158899999999998 4432222221111 0 0111110 1489999999864145667
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEe
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALV 328 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~ 328 (465)
++++.++.+|.+.+ +++|.++|++||++||+||+|+ +|... .......+|+++.| |+++++.++|++++
T Consensus 164 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~----~~~~~~~~di~~~s~sK~l~~~~~~G~l~~ 234 (393)
T 1vjo_A 164 ALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP----IFLDAWGVDLAYSCSQKGLGCSPGASPFTM 234 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTTTCSEEECCSSSTTCSCSSCEEEEE
T ss_pred EEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC----CcccccCccEEEEcCcccccCCCceEEEEE
Confidence 77776666777655 8899999999999999999998 65432 12223457888655 99987559999999
Q ss_pred CHHHHhhccCC-------CC------------cCCC-CChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHH
Q 012368 329 TEKVASAINYG-------DH------------GSTF-AGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 329 ~~~i~~~~~~~-------~~------------~~t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~ 385 (465)
++++++.+... .+ ..++ +.++++++++.++|+.+.+ ++..++++++.+++.+.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 314 (393)
T 1vjo_A 235 SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI 314 (393)
T ss_dssp CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988876321 11 2234 6788999999999987633 356677777777777777664
Q ss_pred HHcCCCceeeec--cceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHHH
Q 012368 386 LARNPHVKDVRG--LGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKT 456 (465)
Q Consensus 386 ~~~~~~~~~~~~--~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~~ 456 (465)
.+.... ..+ .+.++++.++ .+..++.+.|.++ ||.+.++. .++++|+++ ++..+++++++++++|+++
T Consensus 315 --g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 315 --GLSLHV-EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp --TCCBSS-CGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred --CCcccC-CccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHH
Confidence 332211 111 2456777763 3577899999988 99998764 247899994 5677888999999999987
Q ss_pred H
Q 012368 457 L 457 (465)
Q Consensus 457 l 457 (465)
+
T Consensus 392 l 392 (393)
T 1vjo_A 392 L 392 (393)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=240.75 Aligned_cols=335 Identities=14% Similarity=0.054 Sum_probs=211.2
Q ss_pred CCEEEecccCcccccCCC--CCHHHHHHHHH-HHhhcc-ccc--CCCCCHHHHHHHHHHHhhcC----CCeEEe--cCCH
Q 012368 97 GREYLDLSSGIAVNALGH--GDADWIKAVVD-QANVLT-HVS--NMYYSIPQIELAKRLVACSF----ADRVFF--SNTG 164 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh--~~p~v~~a~~~-~~~~~~-~~~--~~~~~~~~~~la~~l~~~~~----~~~v~~--~~sG 164 (465)
|+.++||..+.+...-|+ .+|.|.+++.+ ++.... +.+ ..+..+.++++++++....+ .++|++ |+||
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~ 107 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSG 107 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccch
Confidence 566788888875333343 56889999998 775321 111 11122335555555543333 679999 9999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CC-CceEeeCCCHHHHHhhc
Q 012368 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MP-GVNFVEYGNIEATRKLI 242 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~le~~l 242 (465)
++|++++++++..+. ++++|++.+|+|+++...+...+...... +. .+ +.. .|+++|++++
T Consensus 108 ~~a~~~~~~~~~~~~---------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~~~~~----~d~~~l~~~l 170 (412)
T 1yaa_A 108 TGALHISAKFFSKFF---------PDKLVYLSKPTWANHMAIFENQGLKTATY----PYWANETKS----LDLNGFLNAI 170 (412)
T ss_dssp HHHHHHHHHHHHHHC---------TTCCEEEEESCCTTHHHHHHTTTCCEEEE----ECEETTTTE----ECHHHHHHHH
T ss_pred HhHHHHHHHHHHHhC---------CCCEEEEeCCCCccHHHHHHHcCceEEEE----eeecCCCCc----cCHHHHHHHH
Confidence 999999977665442 57899999999999876554433221110 11 00 111 2789999988
Q ss_pred CCC--CeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---ccccc-cc--cC----Cccc
Q 012368 243 QPG--KTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLWAH-EH--YG----IFPD 309 (465)
Q Consensus 243 ~~~--~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g---~~~~~-~~--~~----~~pd 309 (465)
++. ..++++ +.|.|++| ..++.+.+++|.++|++||+++|+||+|.+|++.+ ..... .. .+ ....
T Consensus 171 ~~~~~~~~~~~~~~p~nPtG--~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 248 (412)
T 1yaa_A 171 QKAPEGSIFVLHSCAHNPTG--LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFV 248 (412)
T ss_dssp HHSCTTCEEEEECSSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEE
T ss_pred HhCCCCCEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEE
Confidence 632 234444 44455444 35688999999999999999999999999886554 22112 11 11 1222
Q ss_pred EEEecccCCC-ccceeeEE--e-----CHH----HHhhccCCCCcCCCCChHHHHHHHHHHHHHhc--------CchHHH
Q 012368 310 IMTLAKPLAG-GLPIGAAL--V-----TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLA 369 (465)
Q Consensus 310 i~t~sK~lg~-G~~iG~v~--~-----~~~----i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--------~~~~~~ 369 (465)
+.++||.++. |+|+||++ + +++ +++.+.......+.+.+++++.++.++|+... .++..+
T Consensus 249 ~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1yaa_A 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4578999997 99999998 7 566 77766532223334558899999998887541 123344
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceeee-ccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHH
Q 012368 370 SVSKKGHYFKETLKQKLARNPHVKDVR-GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~ 448 (465)
+++++.+++.+.|++..... .+.... ..|.++++.+ +...+...+.++||.+.+ .+||+++. .+++++++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~-----~~Ris~~~-~~~~~i~~ 399 (412)
T 1yaa_A 329 RITKMRHALRDHLVKLGTPG-NWDHIVNQCGMFSFTGL--TPQMVKRLEETHAVYLVA-----SGRASIAG-LNQGNVEY 399 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCSS-CCTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCT-----TSEEEGGG-CCTTTHHH
T ss_pred HHHHHHHHHHHHHHhhCCCC-CeeeeccCceEEEeeCC--CHHHHHHHHHhCCEEecc-----CcEEEEcc-CCHhHHHH
Confidence 45555555555555431000 122222 3345555433 445564445578999876 26998874 58999999
Q ss_pred HHHHHHHHHHH
Q 012368 449 AVEILCKTLPV 459 (465)
Q Consensus 449 ~l~~l~~~l~~ 459 (465)
++++|+++++.
T Consensus 400 ~~~~l~~~~~~ 410 (412)
T 1yaa_A 400 VAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-26 Score=226.70 Aligned_cols=325 Identities=14% Similarity=0.038 Sum_probs=219.7
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCC-----CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~-----~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~ 168 (465)
+..|||+.++. +.+|+|++++.+++...... ...+ ..+...+++++++++++ .++|++++||++++
T Consensus 26 ~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 57888887653 47899999999998763211 1112 13447889999999988 46899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc----cCCCCcCCCCCCCC-CCceEeeCCCHHHHHhhcC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL----TSKEHYRSPFEPVM-PGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~ 243 (465)
..+++.+..... ++++|++.+++|++.......+ +....+ .+.. .+.. -|+++|+++++
T Consensus 100 ~~~~~~l~~~~~--------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~----v~~~~~~~~----~d~~~l~~~l~ 163 (406)
T 3cai_A 100 SLLAEASSSRAG--------LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKW----AEVDIETGE----LPTWQWESLIS 163 (406)
T ss_dssp HHHHHHTGGGGB--------TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEE----ECCCTTTCC----CCGGGHHHHCC
T ss_pred HHHHHHHhhccC--------CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEE----EecCcccCC----cCHHHHHHHhC
Confidence 998886521111 5789999999998865443321 111110 1111 1110 18899999997
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCcc
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL 321 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~ 321 (465)
+ ++++|++++.++++|.+.+ +++|.++|++||++||+||+|+ +|... +....++ +|++ +++|.+|++
T Consensus 164 ~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g~~- 232 (406)
T 3cai_A 164 K-STRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWGGPP- 232 (406)
T ss_dssp T-TEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGTSCS-
T ss_pred C-CceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhcCCC-
Confidence 5 5788888887777787765 8899999999999999999997 33221 2223334 5665 567987643
Q ss_pred cee-eEEeCHHHHhhccCCCC---------cCCCCChHHHHHHHHHHHHHhcCch-------------HHHHHHHHHHHH
Q 012368 322 PIG-AALVTEKVASAINYGDH---------GSTFAGSPLVCNAAIAVLDKISNPA-------------FLASVSKKGHYF 378 (465)
Q Consensus 322 ~iG-~v~~~~~i~~~~~~~~~---------~~t~~~~~~~~~aa~a~L~~~~~~~-------------~~~~~~~~~~~l 378 (465)
+| ++++++++++.+.+..+ ....+.++.+++++.++++.+.+.+ ..+++.+....+
T Consensus 233 -~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (406)
T 3cai_A 233 -IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRV 311 (406)
T ss_dssp -CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred -cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHH
Confidence 89 99999999888765432 1123457777777778887664321 234444444444
Q ss_pred HHHHHHHHHcCCCceeeec---cceEEEEEec-CChHHHHHHHHHCCceEeecC------------CCCEEEEecCCCCc
Q 012368 379 KETLKQKLARNPHVKDVRG---LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG------------KGNVVRLVPPLIIS 442 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~---~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~------------~~~~lRi~~~~~~t 442 (465)
++.+.+.+.+.+.+..... .+.++++.+. .+..++.+.|.++||.+.++. ..+++|++++..++
T Consensus 312 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t 391 (406)
T 3cai_A 312 FDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYST 391 (406)
T ss_dssp HHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCC
T ss_pred HHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCC
Confidence 5555555555543322221 3457777773 457789999999999998753 13689999999899
Q ss_pred HHHHHHHHHHHHH
Q 012368 443 EQELDQAVEILCK 455 (465)
Q Consensus 443 ~e~i~~~l~~l~~ 455 (465)
++++++++++|++
T Consensus 392 ~e~i~~~~~~l~~ 404 (406)
T 3cai_A 392 MAEVDQLVRALAS 404 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=239.86 Aligned_cols=318 Identities=16% Similarity=0.096 Sum_probs=216.3
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
.+|+|++|+.+++.. +. .....+...+++++++++++ . ++|++++||++|++.+++.+. .+++
T Consensus 34 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-----------~~gd 99 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HM-QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-----------EPGD 99 (393)
T ss_dssp CCHHHHHHTTCCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-----------CTTC
T ss_pred CCHHHHHHhcccccC--cc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-----------CCCC
Confidence 678888888764321 11 11112346788999999887 2 369999999999999999764 2689
Q ss_pred eEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+|++..++||+... ......+..... .+...+. ..|+++|+++++++++++|++++.++.+|.+.+ ++
T Consensus 100 ~vl~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~----~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~ 168 (393)
T 3kgw_A 100 SFLTGTNGIWGMRAAEIADRIGARVHQ---MIKKPGE----HYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP----LD 168 (393)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEE---EECCTTC----CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred EEEEEeCCchhHHHHHHHHHcCCceEE---EeCCCCC----CCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc----HH
Confidence 99999999876431 111111111100 1111111 138999999997535667777777777777665 88
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccCCCC-------
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYGDH------- 341 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~~~------- 341 (465)
+|+++|++||++||+||+|+ +| +..+..+.++ +|+++ ++|+++++.++|++++++++++.+.....
T Consensus 169 ~i~~l~~~~~~~li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
T 3kgw_A 169 GFGELCHRYQCLLLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYT 243 (393)
T ss_dssp THHHHHHHTTCEEEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred HHHHHHHHcCCEEEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceee
Confidence 99999999999999999987 32 2222233333 46665 55999877789999999999888754211
Q ss_pred ----------------cCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCce-e-eeccce
Q 012368 342 ----------------GSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVK-D-VRGLGL 400 (465)
Q Consensus 342 ----------------~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~-~~~~g~ 400 (465)
..+++.++.+++++.++++.+.+ +++.++++++.+++.+.|+++ ...... . ....+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~ 321 (393)
T 3kgw_A 244 DITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM--GLKFFVKDPEIRLPT 321 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSGGGBCSS
T ss_pred cHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhcCCe
Confidence 11345578888888888886644 455667777777777777664 222110 1 122356
Q ss_pred EEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHHHHHHhhhcC
Q 012368 401 IIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPVLDSNS 464 (465)
Q Consensus 401 ~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~~~ 464 (465)
++++.++ .+..++.+.|+++ ||.+.++. .++++|+++ ++.++++++++++++|+++++++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~ 392 (393)
T 3kgw_A 322 ITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPKNK 392 (393)
T ss_dssp EEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC-
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 6667763 4678899999988 99998753 247899998 777799999999999999999876553
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=232.74 Aligned_cols=316 Identities=12% Similarity=0.070 Sum_probs=209.8
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-C---CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-A---DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~---~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+|+|++|+.+++.. +. .....+...++++++++.++ . +.+++++||++|++.+++.+. .++
T Consensus 30 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-----------~~g 95 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FR-TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-----------TKK 95 (376)
T ss_dssp CCHHHHHHHTSCCCC--CS-SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-----------CTT
T ss_pred CcHHHHHHhcCCCCC--CC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-----------CCC
Confidence 567888887765422 11 11112346788899999887 2 345559999999999998765 168
Q ss_pred ceEEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 012368 191 TEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
++||+.+++||+...... ...+.... ..+...+. ..|+++|++++++ ++++|++++.++.+|.+.+ +
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~----l 163 (376)
T 3f0h_A 96 DKVLVIDGGSFGHRFVQLCEIHEIPYV---ALKLEHGK----KLTKEKLYEYDNQ-NFTGLLVNVDETSTAVLYD----T 163 (376)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTCCEE---EEECCTTC----CCCHHHHHTTTTS-CCCEEEEESEETTTTEECC----H
T ss_pred CeEEEEeCChhhHHHHHHHHHcCCceE---EEeCCCCC----CCCHHHHHHhhcc-CceEEEEecccCCcceecC----H
Confidence 899999999988543211 11111110 00111111 1289999998864 5667777776667777665 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCC--------
Q 012368 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH-------- 341 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~-------- 341 (465)
++|+++|++||+++|+||+|+.+++. +..+.+++...+.+++|+++++.++|++++++++++.+.+...
T Consensus 164 ~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (376)
T 3f0h_A 164 MMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLK 240 (376)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHH
T ss_pred HHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHH
Confidence 99999999999999999999865332 2344455545556677999876678899999999887764211
Q ss_pred ---------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEe-cCCh
Q 012368 342 ---------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEF-DVSA 410 (465)
Q Consensus 342 ---------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~-~~~~ 410 (465)
...++.+..+++++.++++.+.+.+..+++.+....+++.+.+.+.+.+..... ...+.++.+.. ..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (376)
T 3f0h_A 241 DALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTTANA 320 (376)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSSCH
T ss_pred HHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCCCCH
Confidence 123445555667777788766544334555555556666666655555421111 11233333333 3467
Q ss_pred HHHHHHHHHC-CceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 411 TPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 411 ~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++.+.|.++ ||.+.++. .++++|++++..+|++++++++++|++++++
T Consensus 321 ~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 321 YDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 8899999998 99998763 2478999999999999999999999998863
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=233.20 Aligned_cols=306 Identities=16% Similarity=0.113 Sum_probs=203.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~al 172 (465)
.+++||.++.. +++ .+|++.+++.+++.+... ..|+.....++++.++++++ .++|++++||++|+..++
T Consensus 19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSDAL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGGGG--GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CcceECCCCCC--CCC-CCHHHHHHHHHHhhhhhh--hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 46899988765 455 689999999998732111 12232235567777777665 578999999999999998
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE-
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF- 251 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi- 251 (465)
+.+ +++|++. |+||++...+...+..... .+...+.. .|+++| + ++++|+
T Consensus 94 ~~~--------------gd~Vl~~-p~y~~~~~~~~~~g~~~~~----v~~~~~~~----~d~~~l-----~-~~~~v~l 144 (335)
T 1uu1_A 94 LMF--------------DRSVFFP-PTYSCYRIFAKAVGAKFLE----VPLTKDLR----IPEVNV-----G-EGDVVFI 144 (335)
T ss_dssp HHS--------------SEEEECS-SSCHHHHHHHHHHTCEEEE----CCCCTTSC----CCCCCC-----C-TTEEEEE
T ss_pred HHh--------------CCcEEEC-CCcHHHHHHHHHcCCeEEE----eccCCCCC----CCHHHc-----C-CCCEEEE
Confidence 854 2579999 9999987654433322111 11111111 133433 2 344554
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-CccceeeEEeC
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVT 329 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~ 329 (465)
++|.|++ |. .++.+++++|.++| | ++|+||+|++|+. +.... .+..+....+.++||.+| +|+|+||++++
T Consensus 145 ~~p~npt-G~-~~~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 217 (335)
T 1uu1_A 145 PNPNNPT-GH-VFEREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS 217 (335)
T ss_dssp ESSCTTT-CC-CCCHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred eCCCCCC-CC-CCCHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeC
Confidence 7775544 44 34766676666666 8 9999999997643 22111 222344456678999998 69999999999
Q ss_pred HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC
Q 012368 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~ 408 (465)
+++++.+... ..+++.|+++++++.++|+..+ .++..++++++.+++.+.|++. +. ...++.|.++++.++.
T Consensus 218 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~~~~~~ 290 (335)
T 1uu1_A 218 EKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GY-RITDSRGNFVFVFMEK 290 (335)
T ss_dssp HHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TC-CBCCCCSSEEEEECCT
T ss_pred HHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----Cc-EEcCCCCeEEEEECCC
Confidence 9998887642 2457889999999999998521 1334555566666666666554 22 2234557888888743
Q ss_pred -ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 409 -SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 409 -~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+..++.+.|.++||.+.+.. +++|+++. +++|+++++++|+++
T Consensus 291 ~~~~~~~~~l~~~gi~v~~~~--~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 291 EEKERLLEHLRTKNVAVRSFR--EGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHHHHHHTEEEEEET--TEEEEECC---CHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHCCEEEEECC--CeEEEEeC---CHHHHHHHHHHHHhh
Confidence 45678999999999999842 78999864 467899999988753
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=230.61 Aligned_cols=320 Identities=12% Similarity=0.074 Sum_probs=210.7
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
+++|.++. .|+.+|++++++.+++... ....+..+...++++++++.++ .++|++++||++|++.+++.++.
T Consensus 15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~--~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 88 (359)
T 1svv_A 15 PYSFVNDY----SVGMHPKILDLMARDNMTQ--HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 88 (359)
T ss_dssp CEECSCSC----SSCCCHHHHHHHHHHTTCC--CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred eEEecCCC----cCCCCHHHHHHHHHHHhhc--cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence 56666542 4579999999999988642 2234556778999999999887 66899999999999999998752
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccc-cccccCCCCcCCCCCCCCCCceEeeCC----CHHHHHhhcCCC------C
Q 012368 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEYG----NIEATRKLIQPG------K 246 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~------~ 246 (465)
++++|++.+|+||++... .....+ ..+..+|.+ |+++|+++++++ +
T Consensus 89 -----------~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~ 145 (359)
T 1svv_A 89 -----------PWEAVIATQLGHISTHETGAIEATG------------HKVVTAPCPDGKLRVADIESALHENRSEHMVI 145 (359)
T ss_dssp -----------TTEEEEEETTSHHHHSSTTHHHHTT------------CCEEEECCTTSCCCHHHHHHHHHHSCSTTSCE
T ss_pred -----------CCCEEEEcccchHHHHHHHHHhcCC------------CeeEEEeCCCCeecHHHHHHHHHHHHhccCCC
Confidence 588999999999988753 111111 112223322 689999998643 3
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC--CCCCccccccccC--CcccEEEe--cccCCCc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYG--IFPDIMTL--AKPLAGG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--gr~g~~~~~~~~~--~~pdi~t~--sK~lg~G 320 (465)
+++|++++.+ ++|.+ .+.+++++|+++|++||++||+||+|.+| |..+.. ....+ ..+|++++ +|. ++.
T Consensus 146 ~~~v~~~~~~-ptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~-g~~ 220 (359)
T 1svv_A 146 PKLVYISNTT-EVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDMFYIGATKA-GGM 220 (359)
T ss_dssp EEEEEEESSC-TTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSEEEEECTTT-TCS
T ss_pred ceEEEEEcCC-CCcee-cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCEEEEecccC-CCC
Confidence 7788777764 45654 46899999999999999999999999654 443321 11111 24677665 574 334
Q ss_pred cceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc
Q 012368 321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 398 (465)
.++|++++++++++.+.... .+.+++.+....++..++|+...-++..++++++.+++.+.| +. ..+... .+..
T Consensus 221 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~--~~~~ 296 (359)
T 1svv_A 221 FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLA--WPSA 296 (359)
T ss_dssp SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBS--SCCS
T ss_pred CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEc--cCCc
Confidence 66789999998877665321 223333233333333233321001245566666667776666 32 122211 1233
Q ss_pred ceEEEEEecCChHHHHHHHHHC-CceEeec--CCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 399 GLIIGIEFDVSATPVVDACRDS-GLLVLTA--GKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 399 g~~~~i~~~~~~~~~~~~l~~~-Gv~v~~~--~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+.++++.++ .++.+.|+++ ||.+.+. ...+++|+++++.++++++++++++|+++++++
T Consensus 297 ~~~~~~~~~---~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 297 SNQLFPILE---NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp SSEECBEEE---HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred cceEEEEcC---HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 555555553 5788999998 9998542 123689999999999999999999999887654
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=232.20 Aligned_cols=314 Identities=13% Similarity=0.101 Sum_probs=215.8
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--C--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~--~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+|+|++++.+++... ......+...++++++++.++ . ++|++++||++|+. +++.+. .++
T Consensus 13 ~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~-----------~~g 77 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF---TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL-----------KPN 77 (384)
T ss_dssp CCHHHHHHTTCCSCCT---TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC-----------CTT
T ss_pred CCHHHHHHhhcccccc---ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc-----------CCC
Confidence 5788888887765321 111123447788999999887 3 67999999999999 887553 268
Q ss_pred ceEEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 012368 191 TEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
++|++.+++||+.....+ ...+..... .+...+. ..|+++|+++++++++++|++++.++++|.+.+ +
T Consensus 78 d~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l 146 (384)
T 3zrp_A 78 DKILVVSNGVFGDRWEQIFKRYPVNVKV---LRPSPGD----YVKPGEVEEEVRKSEYKLVALTHVETSTGVREP----V 146 (384)
T ss_dssp CEEEEECSSHHHHHHHHHHTTSSCEEEE---ECCSTTC----CCCHHHHHHHHHHSCEEEEEEESEETTTTEECC----H
T ss_pred CEEEEecCCcchHHHHHHHHHcCCcEEE---ecCCCCC----CCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc----H
Confidence 899999999998532221 111111100 1111111 128999999997546888888887777787765 8
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhc-cCCC------
Q 012368 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAI-NYGD------ 340 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~-~~~~------ 340 (465)
++|.++|++||++||+||+|+ ++.. ...... ..+|+++ ++|+++++.++|++++++++++.+ .+..
T Consensus 147 ~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 221 (384)
T 3zrp_A 147 KDVINKIRKYVELIVVDGVSS-VGAE--EVKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYL 221 (384)
T ss_dssp HHHHHHHGGGEEEEEEECTTT-TTTS--CCCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTT
T ss_pred HHHHHHHHhcCCEEEEECccc-ccCc--cccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccc
Confidence 999999999999999999987 3221 111222 2356665 559998777899999999988776 2110
Q ss_pred ---------------CcCCC-CChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCcee--eeccc
Q 012368 341 ---------------HGSTF-AGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKD--VRGLG 399 (465)
Q Consensus 341 ---------------~~~t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g 399 (465)
....+ +.++..+++..++++.+.+ +++.++++++.+++.+.|+++ .+..... ....+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~ 299 (384)
T 3zrp_A 222 DLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSN 299 (384)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCS
T ss_pred cHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCc
Confidence 12223 4566777777777776543 356667777777777777664 2221111 11236
Q ss_pred eEEEEEec-CChHHHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 400 LIIGIEFD-VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 400 ~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++++.++ .+..++.+.|.++||.+.++.. .+++|++++..++++++++++++|+++++++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 300 TVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp SEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 67777774 4678899999999999987642 16899999988999999999999999998765
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=226.83 Aligned_cols=324 Identities=12% Similarity=0.110 Sum_probs=217.7
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-C---CeEEecCCHHHHHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-A---DRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~---~~v~~~~sG~eA~~~al~~a 175 (465)
+++|..| +++ .+|+|++|+.+++. +.+..+..+...+++++++++++ . +++++++||++|+..+++.+
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC---TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC---TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc---CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 5777766 333 78999999877531 21110111346788889998887 2 37999999999999999977
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-CeEEEEEc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-KTAAVFVE 253 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~a~vi~e 253 (465)
+. ++++|+++++.||+... ......+..... .+.... ...|+++|+++++++ ++++|++.
T Consensus 77 ~~-----------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~----~~~d~~~l~~~l~~~~~~~~v~~~ 138 (366)
T 1m32_A 77 LG-----------PQDKVLIVSNGAYGARMVEMAGLMGIAHHA---YDCGEV----ARPDVQAIDAILNADPTISHIAMV 138 (366)
T ss_dssp CC-----------TTCCEEEEESSHHHHHHHHHHHHHTCCEEE---EECCTT----SCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cC-----------CCCeEEEEeCCCccHHHHHHHHHhCCceEE---EeCCCC----CCCCHHHHHHHHhcCCCeEEEEEe
Confidence 41 57889999888887532 111111111100 111111 114899999998742 34555444
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~ 331 (465)
..++++|.+.+ +++|.++|++||++||+||+|+ ++... ..... ..+|++ +++|+++++.++|+++++++
T Consensus 139 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~~K~~~~~~g~G~~~~~~~ 209 (366)
T 1m32_A 139 HSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAA--LHIDYLISSANKCIQGVPGFAFVIAREQ 209 (366)
T ss_dssp SEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTT--TTCSEEEEESSSTTCCCSSEEEEEEEHH
T ss_pred cccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--ccccc--cCccEEEecCcccccCCCceEEEEECHH
Confidence 44445566655 8999999999999999999997 43332 11222 236766 56799977667899999999
Q ss_pred HHhhccCCCC------------------cCCCCChHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHcC
Q 012368 332 VASAINYGDH------------------GSTFAGSPLVCNAAIAVLDKISN----PAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 332 i~~~~~~~~~------------------~~t~~~~~~~~~aa~a~L~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
+++.+..... ...++.++++++++.++|+.+.+ ++..++++++.+++.+.|+++ ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~ 287 (366)
T 1m32_A 210 KLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GF 287 (366)
T ss_dssp HHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CC
Confidence 9887764211 01357788888888888887643 335666777777777777653 22
Q ss_pred CCceee-eccceEEEEEecC----ChHHHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 390 PHVKDV-RGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 390 ~~~~~~-~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
...... ...|.++++.++. +..++.+.|.++||.+.++.. ++++|++++..++++++++++++|+++++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 288 NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred eeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 221111 1246688888742 567899999999999987642 4789999999899999999999999887543
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=232.36 Aligned_cols=309 Identities=13% Similarity=0.090 Sum_probs=213.6
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
.+|+|.+++.+++.. +. .........++++++++.++ .+ .+++++||++|++.+++.+. .+++
T Consensus 24 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~-----------~~gd 89 (411)
T 3nnk_A 24 ADPRVLRAMSSQLIG--QY-DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI-----------RPGD 89 (411)
T ss_dssp CCHHHHHHHTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC-----------CTTC
T ss_pred CCHHHHHHhhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc-----------CCCC
Confidence 568888887764311 11 10112336788999999887 33 48899999999999999774 2689
Q ss_pred eEEEEcCCcccC--ccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCCCCCcccC
Q 012368 192 EFVSFTNSFHGR--TMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264 (465)
Q Consensus 192 ~ii~~~~~yhg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~ 264 (465)
+|++.+++||+. ...+...+. .+..+|.+ |+++|+++++++++++|++++.++.+|.+.+
T Consensus 90 ~Vl~~~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~ 156 (411)
T 3nnk_A 90 KVLVPVFGRFGHLLCEIARRCRA-------------EVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP 156 (411)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTC-------------EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred EEEEecCCchHHHHHHHHHHcCC-------------eEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc
Confidence 999999999983 222211111 12222222 8999999997435677777777777787765
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccCCC--
Q 012368 265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYGD-- 340 (465)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~~-- 340 (465)
+++|+++|++||+++|+||+++ ++. ..+....++ +|+++ ++|+++++.++|++++++++++.+.+..
T Consensus 157 ----l~~i~~l~~~~~~~li~Dea~~-~~~--~~~~~~~~~--~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~ 227 (411)
T 3nnk_A 157 ----LAELGEICRRYDALFYTDATAS-LGG--NPLETDVWG--LDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCV 227 (411)
T ss_dssp ----CTTHHHHHHHHTCEEEEECTTT-BTT--BCCCTTTTT--CSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCC
T ss_pred ----HHHHHHHHHHcCCEEEEECCcc-cCC--cccchhccC--CcEEEecCccccCCCCceEEEEECHHHHHHHhhcccc
Confidence 8899999999999999999986 321 122233333 45654 5699887778999999999987765422
Q ss_pred ----------------------------------CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHH
Q 012368 341 ----------------------------------HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLK 383 (465)
Q Consensus 341 ----------------------------------~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~ 383 (465)
....++.+..+++++.++++.+.+ ++..++++++.+++.+.|+
T Consensus 228 ~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (411)
T 3nnk_A 228 EEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQ 307 (411)
T ss_dssp CGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 012234577888888888886643 3566677777777777776
Q ss_pred HHHHcCCCce-eeeccceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHH
Q 012368 384 QKLARNPHVK-DVRGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCK 455 (465)
Q Consensus 384 ~~~~~~~~~~-~~~~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~ 455 (465)
++ ...... .....+.++++.++ .+..++.+.|+++ ||.+.++. .++++|+++ ++..+++++++++++|++
T Consensus 308 ~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 385 (411)
T 3nnk_A 308 AM--GLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEA 385 (411)
T ss_dssp HT--TCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred Hc--CCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHH
Confidence 63 222111 11224677778773 4677899999887 99998752 247899998 778899999999999999
Q ss_pred HHHHhh
Q 012368 456 TLPVLD 461 (465)
Q Consensus 456 ~l~~~~ 461 (465)
+++++.
T Consensus 386 ~l~~~~ 391 (411)
T 3nnk_A 386 VLNYLK 391 (411)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 998764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=227.10 Aligned_cols=325 Identities=15% Similarity=0.130 Sum_probs=205.8
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~ 176 (465)
..+|||.++. .++.+|+|++|+.+++.. +...+...+...+++++++++++.+ +|++++||++|+..++++++
T Consensus 7 ~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~ 80 (356)
T 1v72_A 7 PPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT 80 (356)
T ss_dssp CCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC
T ss_pred CceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc
Confidence 4689998763 367899999999987632 2222234566889999999998844 59999999999999998764
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccc--ccccc-CCCCcCCCCCCCCCCceEeeCCCHHHHHh-hcCCC------C
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMG--ALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPG------K 246 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~------~ 246 (465)
. +++.|++.+++|.+.... ..... +..... .+.. .. .-|+++|++ ++++. +
T Consensus 81 ~-----------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~-~~----~~d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 81 P-----------PWGNIYCHPASHINNDECGAPEFFSNGAKLMT---VDGP-AA----KLDIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp C-----------TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEE---CCCG-GG----CCCHHHHHHHTTSSTTCTTSCE
T ss_pred C-----------CCCEEEEcCccchhhhhchHHHHHhCCcEEEE---ecCC-CC----eEcHHHHHHHhhhcchhhccCC
Confidence 1 578888887766443322 22221 211111 1110 00 128999999 88742 5
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC--CCCccccccccC--CcccEE--EecccCCCc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG--RTGYLWAHEHYG--IFPDIM--TLAKPLAGG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g--r~g~~~~~~~~~--~~pdi~--t~sK~lg~G 320 (465)
+++|++++.+ ++|. +++.+++++|+++|++||++||+||+|..+. ..|.. ....+ ...|++ ++||+ |
T Consensus 142 ~~~v~~~~~~-~tG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g 214 (356)
T 1v72_A 142 PACVSITQAT-EVGS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G 214 (356)
T ss_dssp EEEEEEESSC-TTSC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T
T ss_pred ceEEEEEcCC-CCCc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C
Confidence 7888888855 4665 5688999999999999999999999986431 11211 11111 124555 46787 3
Q ss_pred ccee--eEEeCHHHHhhccCC-CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee-ee
Q 012368 321 LPIG--AALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD-VR 396 (465)
Q Consensus 321 ~~iG--~v~~~~~i~~~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~ 396 (465)
.|+| ++++++++++.+... .+.++.... +..++.++++.++++ .+.+..+....+++.+.+.+.+++.+.. .+
T Consensus 215 ~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 291 (356)
T 1v72_A 215 VLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDD-LWLRNARKANAAAQRLAQGLEGLGGVEVLGG 291 (356)
T ss_dssp CSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTT-HHHHHHHHHHHHHHHHHHHHTTCTTEEEESC
T ss_pred CcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhCCCcEEccC
Confidence 3666 777888887766432 111222221 123333445555442 2222233333334444444444443332 23
Q ss_pred ccceEEEEEecCChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 397 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 397 ~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..+.++++.++ .++.+.|.++||.+.++.. ++++|+++++.++++++++++++|++++++.
T Consensus 292 ~~~~~~~~~~~---~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 292 TEANILFCRLD---SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp CCSSEEEEEEC---HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred CCccEEEEEcC---HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 45667777763 4789999999999986532 4789999999999999999999999887664
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=231.66 Aligned_cols=325 Identities=15% Similarity=0.081 Sum_probs=210.6
Q ss_pred CCCHHHHHHHHHHHhhcccc--cCCCCC----HHHHHHHHHHHhhcCC----CeE--EecCCHHHHHHHHHHHHHHHhhh
Q 012368 114 HGDADWIKAVVDQANVLTHV--SNMYYS----IPQIELAKRLVACSFA----DRV--FFSNTGTEANEAAIKFARKFQRH 181 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~--~~~~~~----~~~~~la~~l~~~~~~----~~v--~~~~sG~eA~~~al~~a~~~t~~ 181 (465)
|.++.+.+++.+++...... ...... ..+.++++++++.++. +++ ++++||++|+..++++++...+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 35677777777766543211 111111 2255677888888883 577 99999999999999999865421
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccC
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQ 256 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~ 256 (465)
..+ .++++|++..++|+++...+...+. ++..+|.+ |+++|++++++ ++++|++++.+
T Consensus 187 ~~g---~~~d~Vi~~~~~~~~~~~~~~~~G~-------------~v~~v~~~~~~~~d~~~Le~~i~~-~~~~v~~~~~~ 249 (514)
T 3mad_A 187 TKG---ITAPEAVVPVSAHAAFDKAAQYFGI-------------KLVRTPLDADYRADVAAMREAITP-NTVVVAGSAPG 249 (514)
T ss_dssp HHC---CSSCEEEEETTSCTHHHHHHHHHTC-------------EEEEECBCTTSCBCHHHHHHHCCT-TEEEEEEETTC
T ss_pred hcC---CCCCeEEEeCccchHHHHHHHHcCC-------------eeEEeeeCCCCCCCHHHHHHHhcc-CCEEEEEeCCC
Confidence 100 1247999999999886644433321 12233332 89999999975 57788887777
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC-----CCCc---cccccccCCcccEEEecccCCCccceeeEEe
Q 012368 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-----RTGY---LWAHEHYGIFPDIMTLAKPLAGGLPIGAALV 328 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g-----r~g~---~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~ 328 (465)
+++|.+.+ +++|+++|++||++||+||+|.++. +.|. .+.....++...+.+++|++.+|.++|++++
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 77777765 8999999999999999999999862 2332 2233334543333345699888899999998
Q ss_pred CHHHHhhccCC--------------CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 329 TEKVASAINYG--------------DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 329 ~~~i~~~~~~~--------------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
+++.+...... ..++.+..+.+++.+++..+.....+++.+++.++.+++++.|++ .+.+..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~ 401 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA----IPSLKI 401 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----STTCEE
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh----CCCeEE
Confidence 87655432210 011122222344444444443222244566666666666666554 443333
Q ss_pred eeccceEEEEEec-CChHHHHHHHHHCCceEeecCCCCEEEEecC-CCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 395 VRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPP-LIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 395 ~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.....++++..+ .+..++.+.|.++||.+.....++.+|+++. ...+++++++++++|++++++++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 402 LGDPLWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp SSCCSSEEEEECSSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred eCCCeEEEEEeCCCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3233446666653 4678899999999998854443578999987 4456799999999999999887654
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=236.63 Aligned_cols=340 Identities=14% Similarity=0.125 Sum_probs=214.9
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a 175 (465)
.|+.||||.++.++ |.|++++.+++..... .+.+.+...+++++++++++.++|+||+||++|++++++++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~--~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~ 111 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE--AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 111 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC--CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhccc--ccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHH
Confidence 46789999887653 6788888887764322 22345667899999999999899999999999999999998
Q ss_pred HHHhhhcCCCCCCCCce---EEEEcCCcccCccccccccCCCCcCCCCC-CCCCCceEeeC---CCHHHHHhhcCC---C
Q 012368 176 RKFQRHSNPDSKEPATE---FVSFTNSFHGRTMGALALTSKEHYRSPFE-PVMPGVNFVEY---GNIEATRKLIQP---G 245 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~---ii~~~~~yhg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~d~~~le~~l~~---~ 245 (465)
+.+... +++. ||+. ..+|+.+...+...+......... ..... ...++ .|+++|+++++. .
T Consensus 112 ~~~~~~-------~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~i~~~~~~ 182 (467)
T 1ax4_A 112 LKYKQK-------EGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSE-TYDDWKGDFDIKKLKENIAQHGAD 182 (467)
T ss_dssp HHHHHH-------TTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTT-SCCTTTTCBCHHHHHHHHHHHCGG
T ss_pred HHhhcc-------CCCccceEEEe-ccccchhhHHHhccCCceeccccccccccc-ccCCcccccCHHHHHHHHHhcCCC
Confidence 754210 2555 7776 333344333333222211110000 00000 00112 289999999973 3
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC---C-------CCCCccccccccC----CcccEE
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG---L-------GRTGYLWAHEHYG----IFPDIM 311 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g---~-------gr~g~~~~~~~~~----~~pdi~ 311 (465)
++++|+++++++++|..+++.+++++|+++|++||++||+||++.. + +..|.. ..... ..+|++
T Consensus 183 ~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~ 260 (467)
T 1ax4_A 183 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT--IKEVIFDMYKYADAL 260 (467)
T ss_dssp GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC--HHHHHHHHGGGCSEE
T ss_pred CeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc--hhhhhhhhccccceE
Confidence 6889999988777755677899999999999999999999998652 0 222211 00000 124665
Q ss_pred --EecccCCCccce-eeEEeC-H-HHHhhccCC----CCcCCCCChHHHH-HHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012368 312 --TLAKPLAGGLPI-GAALVT-E-KVASAINYG----DHGSTFAGSPLVC-NAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 312 --t~sK~lg~G~~i-G~v~~~-~-~i~~~~~~~----~~~~t~~~~~~~~-~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
++||+++ .|+ |+++++ + ++++.+... ....++++++..+ +++.++|+...+++..++..++.+++++.
T Consensus 261 ~~s~sK~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~ 338 (467)
T 1ax4_A 261 TMSAKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDR 338 (467)
T ss_dssp EEETTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4567664 465 455566 6 777655321 1122344433333 33333676554444566666777778777
Q ss_pred HHHHHHcCCCceeeeccceEEEEE-------ec---CChHHHHHHH-HHCCceEeecC----------------CCCEEE
Q 012368 382 LKQKLARNPHVKDVRGLGLIIGIE-------FD---VSATPVVDAC-RDSGLLVLTAG----------------KGNVVR 434 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~~g~~~~i~-------~~---~~~~~~~~~l-~~~Gv~v~~~~----------------~~~~lR 434 (465)
|++ ..++.. .+..|.++++. +. .+..++++.| .++||.+.+.+ ..+++|
T Consensus 339 L~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iR 414 (467)
T 1ax4_A 339 LRE--AGIPIQ--YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMR 414 (467)
T ss_dssp HHH--TTCCBC--SSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEE
T ss_pred HHh--CCCCcc--cCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEE
Confidence 766 233322 23346667776 31 1356788988 88999998721 026899
Q ss_pred EecC-CCCcHHHHHHHHHHHHHHHHHhh
Q 012368 435 LVPP-LIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 435 i~~~-~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|+++ ..+|++++++++++|++++++++
T Consensus 415 ls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 415 LTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp EECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred EecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 9998 55899999999999999988754
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=233.08 Aligned_cols=328 Identities=16% Similarity=0.138 Sum_probs=214.2
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhh-ccccc--CCC--CCHH---HHH-HHHHHHhhcCCCeE-EecCCHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHVS--NMY--YSIP---QIE-LAKRLVACSFADRV-FFSNTGTEA 167 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~-~~~~~--~~~--~~~~---~~~-la~~l~~~~~~~~v-~~~~sG~eA 167 (465)
++|||+.++... + +|.|++|+.+++.+ ..+.+ ..+ ..+. .++ .+++++++++.+.. +++++|++|
T Consensus 23 ~~~i~~~~~~~~--~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASENF--V---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTCCC--C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCCCC--C---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 357898888653 3 89999999998864 22211 111 2222 222 22488888885443 566778999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcc--ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTM--GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (465)
+..+++++. .++++|++.+++|+++.. ..+...+......++ +..+.. ...|+++|++++++.
T Consensus 98 ~~~~~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~~~d~~~l~~~l~~~ 162 (407)
T 2dkj_A 98 NMAVYMALM-----------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSY-GVRPDT---ELIDLEEVRRLALEH 162 (407)
T ss_dssp HHHHHHHHC-----------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEE-CCCTTT---SSCCHHHHHHHHHHH
T ss_pred HHHHHHHhc-----------CCCCEEEEecccccCccchHHHHHhcCceEEEEec-CCCccc---CccCHHHHHHHHhhc
Confidence 999999774 158899999999988742 222221110000000 000000 113899999998632
Q ss_pred CeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-CCCCCccccccccCCcccEE--EecccCCCcc
Q 012368 246 KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL 321 (465)
Q Consensus 246 ~~a~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~ 321 (465)
++++|++ +|+++ ...+ +++|.++|++||++||+||+|++ +...|.... ..+ .+|++ ++||+++ |.
T Consensus 163 ~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g~ 231 (407)
T 2dkj_A 163 RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-GP 231 (407)
T ss_dssp CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-CC
T ss_pred CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-CC
Confidence 4566666 67765 3333 89999999999999999999985 422332211 111 25776 7899887 56
Q ss_pred ceeeEEeC-HHHHhhccCC-CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 322 PIGAALVT-EKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 322 ~iG~v~~~-~~i~~~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
++|+++++ +++++.+... ....+.+.++..++++.++|+.+.. +++.++++++.+++.+.|++. .++... .+
T Consensus 232 ~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~ 308 (407)
T 2dkj_A 232 RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GYRIVT-GG 308 (407)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG-GS
T ss_pred CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--Cceeec-CC
Confidence 78999999 8988877542 2333344567677777788876533 455666666777776666653 222111 13
Q ss_pred ccceEEEEEecC---ChHHHHHHHHHCCceEeecC---------CCCEEEEecCC----CCcHHHHHHHHHHHHHHHHH
Q 012368 397 GLGLIIGIEFDV---SATPVVDACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 397 ~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~----~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.|.++++.+.. +..++.+.|.++||.+.++. .++.+|++++. .++++++++++++|++++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 309 TDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 568888888842 57789999999999998752 13679998865 37999999999999999877
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=229.85 Aligned_cols=310 Identities=15% Similarity=0.095 Sum_probs=207.3
Q ss_pred CHHHHHHHHHHHh-hcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q 012368 116 DADWIKAVVDQAN-VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194 (465)
Q Consensus 116 ~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii 194 (465)
.+.+.+++..+.. ...+.+..+.++...+++++++++++.+.+++++||++|+..+++.+. .++++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-----------~~gd~vi 107 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-----------QQGDHIV 107 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEE
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEE
Confidence 3455555542111 122334455677899999999999997788888999999999999764 1588999
Q ss_pred EEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 012368 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (465)
Q Consensus 195 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~ 274 (465)
+.+++||+.......... .....+..+|.+|++++++++++ ++++|++++.++++|.+.+ +++|.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~ 173 (398)
T 2rfv_A 108 SASAIYGCTHAFLSHSMP---------KFGINVRFVDAAKPEEIRAAMRP-ETKVVYIETPANPTLSLVD----IETVAG 173 (398)
T ss_dssp EESSSCHHHHHHHHTHHH---------HTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSBTTTTBCCC----HHHHHH
T ss_pred EcCCCcccHHHHHHHHHH---------HcCCEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccC----HHHHHH
Confidence 999999987654311100 01123455677799999999975 6788888888777787765 999999
Q ss_pred HHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCC-ccce-eeEEeCHHHHh-hccCCCCcC-CCCChHH
Q 012368 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGS-TFAGSPL 350 (465)
Q Consensus 275 l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~-t~~~~~~ 350 (465)
+|++||+++|+||+|..+ ..+... .++....+.++||++++ |+|+ |++++++++++ .+.+..... +.+.+++
T Consensus 174 l~~~~~~~li~De~~~~~-~~~~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (398)
T 2rfv_A 174 IAHQQGALLVVDNTFMSP-YCQQPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPF 249 (398)
T ss_dssp HHHHTTCEEEEECTTTCT-TTCCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHH
T ss_pred HHHHcCCEEEEECCCccc-ccCCch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHH
Confidence 999999999999999843 222221 23433444678999986 7898 99999998876 555433333 4577899
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH----------HHcCCCceee----eccceEEEEEecCC---hHHH
Q 012368 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK----------LARNPHVKDV----RGLGLIIGIEFDVS---ATPV 413 (465)
Q Consensus 351 ~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~~----~~~g~~~~i~~~~~---~~~~ 413 (465)
.++++.++|+.+ +...++..++.+.+.+.|++. +..+|.+... ++.|.++++++... ...+
T Consensus 250 ~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 327 (398)
T 2rfv_A 250 NAWLTLRGVKTL--GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRM 327 (398)
T ss_dssp HHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHH
T ss_pred HHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHH
Confidence 999998888643 233455555666655555432 1111211111 24688888888422 2223
Q ss_pred HHHHHHCCceEeec-------------------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 414 VDACRDSGLLVLTA-------------------------G-KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 414 ~~~l~~~Gv~v~~~-------------------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.+.+...|+.+.++ + ..+.+|++++...+++++++++++|+++
T Consensus 328 ~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 328 INSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 33333345554433 1 1378999999999999999988888653
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=222.32 Aligned_cols=322 Identities=13% Similarity=0.098 Sum_probs=214.5
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC-C-----CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-Y-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~-~-----~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~a 171 (465)
|+|+.++ +..+|.+++++.+++.+....... + ..+...+++++++++++ .++|++++||++|+..+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 6777654 347899999999998763211111 1 12336689999999987 56899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCC
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQP 244 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~ 244 (465)
++.+..... .+++.|++.++.|++.......+ .+. .+..+|. .|+++|++++++
T Consensus 77 ~~~~~~~~~-------~~gd~vi~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4hvk_A 77 IIGYAMRNA-------RKGKHILVSAVEHMSVINPAKFLQKQGF------------EVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp HHHHHHHHG-------GGCCEEEEETTCCHHHHHHHHHHHHTTC------------EEEEECBCTTSCBCHHHHHHHCCT
T ss_pred HHHhhhhhc-------CCCCEEEECCCCcHHHHHHHHHHHhcCC------------EEEEeccCCCCCcCHHHHHHHhcc
Confidence 997752111 15889999999998776543322 111 1122222 289999999975
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccc
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLP 322 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~ 322 (465)
++++|++++.++.+|.+.+ +++|.++|++||+ +|+||+|+ +|.. .......+ +|++ +++|.+| +.+
T Consensus 138 -~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~g-~~g 205 (382)
T 4hvk_A 138 -DTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIG--ADMLTISSNDIYG-PKG 205 (382)
T ss_dssp -TEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHT--CSEEEEESGGGTS-CTT
T ss_pred -CceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcC--CCEEEEeHHHhcC-CCc
Confidence 5778888887777787765 8899999999999 99999986 3221 11222233 4555 5679654 334
Q ss_pred eeeEEeCHHHHhhccCCCCc-------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 323 IGAALVTEKVASAINYGDHG-------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~-------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
+|+++++++. .+.+...+ ...+.++..++++.++++.+.+ ..++..+....+++.+.+.+..++.+...
T Consensus 206 ~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 281 (382)
T 4hvk_A 206 VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRIIDNVLKIEESYLN 281 (382)
T ss_dssp CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTEEEC
T ss_pred eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 7888877654 23222111 1334577788888888875432 33344444444444444444455433322
Q ss_pred ec----cceEEEEEec-CChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHHHH
Q 012368 396 RG----LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 396 ~~----~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i~~ 448 (465)
.. .+.++.+.+. .+..++.+.|.++||.+.++.. .+++|++++..+|++++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~ 361 (382)
T 4hvk_A 282 GHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDR 361 (382)
T ss_dssp SCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHH
T ss_pred CCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHH
Confidence 21 2346666663 4678899999999999986520 3789999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 012368 449 AVEILCKTLPVLDS 462 (465)
Q Consensus 449 ~l~~l~~~l~~~~~ 462 (465)
++++|+++++++++
T Consensus 362 ~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 362 LLEVLPGVIERLRS 375 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=237.25 Aligned_cols=339 Identities=16% Similarity=0.134 Sum_probs=227.2
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc----ccCC---CCCHHHHHHHHHHHhhcC--CCeEEecCCHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH----VSNM---YYSIPQIELAKRLVACSF--ADRVFFSNTGTE 166 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~----~~~~---~~~~~~~~la~~l~~~~~--~~~v~~~~sG~e 166 (465)
++..|+|.. ++|+.++.+.+++.+++..+.. ++.. .......+++++++++++ .++|++++|+++
T Consensus 66 ~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~ 139 (465)
T 3e9k_A 66 ENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTV 139 (465)
T ss_dssp CBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHH
T ss_pred CCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHH
Confidence 355677632 4687788888888887754321 1111 112335678889999887 579999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc---ccCCCCcC--CCCCCCCCCceEeeCCCHHHHHhh
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYR--SPFEPVMPGVNFVEYGNIEATRKL 241 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~ 241 (465)
++..+++.+.... .++++||+.+++||+....... ..+..... ....+...+.. -|+++|+++
T Consensus 140 al~~~~~~~~~~~--------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~----~d~~~l~~~ 207 (465)
T 3e9k_A 140 NLHLLMLSFFKPT--------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEET----LRIEDILEV 207 (465)
T ss_dssp HHHHHHHHHCCCC--------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSS----CCHHHHHHH
T ss_pred HHHHHHHHhcccc--------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCc----cCHHHHHHH
Confidence 9999998764211 1467799999999986543322 11111000 00001111111 179999999
Q ss_pred cC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccC
Q 012368 242 IQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPL 317 (465)
Q Consensus 242 l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~l 317 (465)
++ ..++++|+++++++.+|.+.+ +++|.++|++||+++|+|++|+ .|.. ......++ .|++ +++|.+
T Consensus 208 i~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~--~~~~~~~~--~D~~~~s~~K~l 278 (465)
T 3e9k_A 208 IEKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV--ELYLHDWG--VDFACWCSYKYL 278 (465)
T ss_dssp HHHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHHHT--CCEEEECSSSTT
T ss_pred HHhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCchhhcC--CCEEEECccccc
Confidence 96 246889998888888888776 8999999999999999999987 3222 12222333 4655 466999
Q ss_pred CCc-cceeeEEeCHHHHhhccCCCCc---C------------C----------CCChHHHHHHHHHHHHHhcC---chHH
Q 012368 318 AGG-LPIGAALVTEKVASAINYGDHG---S------------T----------FAGSPLVCNAAIAVLDKISN---PAFL 368 (465)
Q Consensus 318 g~G-~~iG~v~~~~~i~~~~~~~~~~---~------------t----------~~~~~~~~~aa~a~L~~~~~---~~~~ 368 (465)
++| .++|++++++++.+.+.+...+ + + .+.+++++++..++++.+.+ +.+.
T Consensus 279 ~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~ 358 (465)
T 3e9k_A 279 NAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALR 358 (465)
T ss_dssp CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHH
Confidence 644 5789999999987766543211 1 0 14567888888888887643 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHc------CCCcee-----eeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEec
Q 012368 369 ASVSKKGHYFKETLKQKLAR------NPHVKD-----VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP 437 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~------~~~~~~-----~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~ 437 (465)
++..++.+++.+.|++.+.. .+.+.. ....|.++++.++....++.+.|.++||.+...+. +++||++
T Consensus 359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~-~~iRis~ 437 (465)
T 3e9k_A 359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELEKRGVVCDKRNP-NGIRVAP 437 (465)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHHHHHTTTEECEEETT-TEEEEBC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHHHHHHCCEEEecCCC-CEEEEeC
Confidence 67777777777777664211 022222 22348888888864556799999999999986654 8999998
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 438 -PLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 438 -~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++.+|++|+++++++|++++++..+
T Consensus 438 ~~~~~t~edi~~~~~~l~~~l~~~~~ 463 (465)
T 3e9k_A 438 VPLYNSFHDVYKFTNLLTSILDSAET 463 (465)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHTC---
T ss_pred cccCCCHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999876543
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=221.68 Aligned_cols=325 Identities=14% Similarity=0.100 Sum_probs=215.3
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCC-----CHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYY-----SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~-----~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~a 171 (465)
|+|+.++ |+.+|.|++++.+++...... ...+. .+...+++++++++++ .++|++++||++|+..+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 7787664 468999999999988752111 11121 2347789999999988 46999999999999999
Q ss_pred HHHHHHHh-hhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCC
Q 012368 172 IKFARKFQ-RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPG 245 (465)
Q Consensus 172 l~~a~~~t-~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~ 245 (465)
++.+..+. . +++.|++.+++|++.......+.. .. ..+..+|. .|+++|++++++
T Consensus 77 ~~~l~~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~~~-~g---------~~~~~v~~~~~~~~d~~~l~~~i~~- 137 (382)
T 4eb5_A 77 IIGYAMRNAR--------KGKHILVSAVEHMSVINPAKFLQK-QG---------FEVEYIPVGKYGEVDVSFIDQKLRD- 137 (382)
T ss_dssp HHHHHHHHGG--------GCCEEEEETTCCHHHHHHHHHHTT-TT---------CEEEEECBCTTSCBCHHHHHHHCCT-
T ss_pred HHHHHhhccC--------CCCEEEECCCcchHHHHHHHHHHh-CC---------cEEEEeccCCCCccCHHHHHHHhcC-
Confidence 99876321 2 578999999999877544332110 00 11122221 289999999975
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccce
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPI 323 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~i 323 (465)
++++|+++..++++|.+.+ +++|.++|++||++ |+||+|. +|.. ......+ .+|++ +++|.+|. .++
T Consensus 138 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~--~~~~~~~--~~di~~~s~sK~~g~-~g~ 206 (382)
T 4eb5_A 138 DTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI--EVDVEKI--GADMLTISSNDIYGP-KGV 206 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB--CCCHHHH--TCSEEEEETGGGTCC-SSC
T ss_pred CCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc--ccCcccc--CCCEEEeehHHhcCC-Cce
Confidence 5778888777777777665 89999999999999 9999997 4422 1122222 35665 56797553 237
Q ss_pred eeEEeCHHH-HhhccCC----CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-
Q 012368 324 GAALVTEKV-ASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG- 397 (465)
Q Consensus 324 G~v~~~~~i-~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 397 (465)
|+++++++. +..+... ......+.++..+.++.++++.+.+ .++++.+....+++.+.+.+.++|.+.....
T Consensus 207 G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 284 (382)
T 4eb5_A 207 GALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRIIDNVLKIEESYLNGHP 284 (382)
T ss_dssp EEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCS
T ss_pred EEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCc
Confidence 899888763 2211110 0112234566777777778876543 1333344444444444444444443322222
Q ss_pred ---cceEEEEEec-CChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHHHHHHH
Q 012368 398 ---LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 398 ---~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
.+.++++.+. .+..++.+.|.++||.+.++.. .+++|++++..+++++++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 364 (382)
T 4eb5_A 285 EKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE 364 (382)
T ss_dssp SSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHH
Confidence 2567777773 4677899999999999987531 3689999988889999999999
Q ss_pred HHHHHHHHhhh
Q 012368 452 ILCKTLPVLDS 462 (465)
Q Consensus 452 ~l~~~l~~~~~ 462 (465)
+|+++++++++
T Consensus 365 ~l~~~~~~~~~ 375 (382)
T 4eb5_A 365 VLPGVIERLRS 375 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=227.60 Aligned_cols=330 Identities=12% Similarity=0.074 Sum_probs=217.2
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CC-eEEecCCHHHHHHHH
Q 012368 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAA 171 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~-~v~~~~sG~eA~~~a 171 (465)
.+|+.|+|..+. ++ .+|++++++.+++.. +. ..+......+++++++++++ .+ +|++++||++|+..+
T Consensus 16 ~~~~~~~~~~g~-----~~-~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 16 VTPNKLLMGPGP-----SN-APQRVLDAMSRPILG--HL-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCCCCEECSSSC-----CC-CCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CCCCeEEecCCC-----CC-CCHHHHHHHHhhhcc--CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 356777765443 22 678999988776543 11 11223447889999999987 33 799999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
++.+. .++++|++.+++||+...... ...+.... +.+...+. ..|+++|++++++.++++|
T Consensus 87 ~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~l~~~i~~~~~~~v 148 (393)
T 2huf_A 87 LCNLL-----------EDGDVILIGHTGHWGDRSADMATRYGADVR---VVKSKVGQ----SLSLDEIRDALLIHKPSVL 148 (393)
T ss_dssp HHHHC-----------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE---EEECCTTC----CCCHHHHHHHHHHHCCSEE
T ss_pred HHHHh-----------CCCCEEEEECCCcchHHHHHHHHHcCCeeE---EEeCCCCC----CCCHHHHHHHHhccCCcEE
Confidence 99764 158899999999998431111 11111100 01111111 1389999999864135666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEe
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALV 328 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~ 328 (465)
++++.++++|.+.+ +++|.++|++||++||+||+++ +|.. ...... ..+|+++ ++|+++|+.++|++++
T Consensus 149 ~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~~G~G~~~~ 219 (393)
T 2huf_A 149 FLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAPPGITPVSF 219 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCCSSCEEEEE
T ss_pred EEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccCCCeEEEEE
Confidence 66666666677655 8899999999999999999986 4322 112222 2467775 4599876445599999
Q ss_pred CHHHHhhccCCC----------------------CcCC-CCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHH
Q 012368 329 TEKVASAINYGD----------------------HGST-FAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETL 382 (465)
Q Consensus 329 ~~~i~~~~~~~~----------------------~~~t-~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l 382 (465)
++++++.+.... ...+ .+.+..+++++.++|+.+.+ ++..++++++.+++.+.|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 299 (393)
T 2huf_A 220 SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGL 299 (393)
T ss_dssp CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999888765320 0111 23466677777778876532 345667777777777777
Q ss_pred HHHHHcCCCceeee-ccceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHH
Q 012368 383 KQKLARNPHVKDVR-GLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILC 454 (465)
Q Consensus 383 ~~~~~~~~~~~~~~-~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~ 454 (465)
+++ .+....... ..+.++++.+. .+..++.+.|+++ ||.+.++. .++++|+++ ++..+++++++++++|+
T Consensus 300 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~ 377 (393)
T 2huf_A 300 QDA--GFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQ 377 (393)
T ss_dssp HHT--TCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HHc--CCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHH
Confidence 664 332211111 12457777763 3567899999875 99998753 247899998 55678999999999999
Q ss_pred HHHHHhhh
Q 012368 455 KTLPVLDS 462 (465)
Q Consensus 455 ~~l~~~~~ 462 (465)
+++++++.
T Consensus 378 ~~~~~~~~ 385 (393)
T 2huf_A 378 EAVAAVKP 385 (393)
T ss_dssp HHHHHHCC
T ss_pred HHHHHcCC
Confidence 99987754
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-25 Score=215.29 Aligned_cols=325 Identities=17% Similarity=0.148 Sum_probs=215.1
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
+++|||.++... + .+|.+++++.+.... ...+++.+...+|+++|+++++.+.+++++||++|+.++++.+.
T Consensus 3 ~~~i~~~~~~~~--~--p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~- 74 (347)
T 1jg8_A 3 HMMIDLRSDTVT--K--PTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT- 74 (347)
T ss_dssp --CEECSCGGGC--C--CCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-
T ss_pred ceEEEeccccCC--C--CCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhc-
Confidence 467899887552 2 678888888654321 11233566678999999999998889999999999998887654
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccc--cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCeEEE
Q 012368 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAV 250 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a~v 250 (465)
.++++|++.+|+|...... .....+..... . ...+.. .|+++|++++++ .++++|
T Consensus 75 ----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~---v-~~~~~~----~d~~~l~~~i~~~~~~~~~~~~v 136 (347)
T 1jg8_A 75 ----------QRGDEVILEADSHIFWYEVGAMAVLSGVMPHP---V-PGKNGA----MDPDDVRKAIRPRNIHFPRTSLI 136 (347)
T ss_dssp ----------CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEE---E-CEETTE----ECHHHHHHHSCCSCTTSCCEEEE
T ss_pred ----------CCCCEEEEcCcchhhhccccchhhccCeEEEE---e-cCCCCc----cCHHHHHHHhccccccccCceEE
Confidence 1688999999987543221 11111111100 0 000111 189999999974 157788
Q ss_pred EEcccCCCC-CcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC---CCCccccccc--cCCcccEEEecccCCCcccee
Q 012368 251 FVEPIQGEG-GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG---RTGYLWAHEH--YGIFPDIMTLAKPLAGGLPIG 324 (465)
Q Consensus 251 i~ep~~~~~-G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g---r~g~~~~~~~--~~~~pdi~t~sK~lg~G~~iG 324 (465)
++++.++++ |. +.+.+.+++|.++|++||++||+||+|. ++ ..+. .... .+...-++++||++++ ++|
T Consensus 137 ~~~~~~npt~G~-~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~--~~~~~~~~~d~~~~s~sK~l~~--~~G 210 (347)
T 1jg8_A 137 AIENTHNRSGGR-VVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGV--PVKEYAGYADSVMFCLSKGLCA--PVG 210 (347)
T ss_dssp EEESSBTTTTSB-CCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCC--CHHHHHHTCSEEEEESSSTTCC--SSC
T ss_pred EEeccccccCCc-cCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCC--ChHHhcccccEEEEecccccCC--Cce
Confidence 777665555 65 4578889999999999999999999874 21 1111 1111 1121123468999975 467
Q ss_pred -eEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012368 325 -AALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 325 -~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
++++++++++.+... ..++++..+++.++++.++|+... +. .++..++.+++.+.|+++ ..... ..+..+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~~~~ 285 (347)
T 1jg8_A 211 SVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEI--GYSVN-PEDVKTNM 285 (347)
T ss_dssp EEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHH--TCBCC-GGGCCSSE
T ss_pred EEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhc--Cceec-cCCCcceE
Confidence 466788877665321 123344456677777777787542 22 344455667777777664 22211 12345778
Q ss_pred EEEEec---CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 402 IGIEFD---VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 402 ~~i~~~---~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+++.++ .+..++.+.|.++||.+.+.+. +.+|++++..++++++++++++|+++++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~-~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 286 VILRTDNLKVNAHGFIEALRNSGVLANAVSD-TEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp EEEECTTSSSCHHHHHHHHHHHTEECEEEET-TEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcccccCCHHHHHHHHHHCCCEEecCCC-CeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 888874 3477899999999999988754 789999988899999999999999988654
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=224.33 Aligned_cols=326 Identities=13% Similarity=0.053 Sum_probs=220.0
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
..|+|..+ .++.+|.|++++.+++.. +. .........+++++++++++ .++|++|+||++|+..+++.+
T Consensus 9 ~~yl~~~~------~~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 9 PVITLTAG------PVNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp CSEECSSS------CCCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH
T ss_pred cceeecCC------CcCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh
Confidence 46777643 246889999998876643 11 11112336789999999988 479999999999999999976
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC-CCCeEEEEEc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PGKTAAVFVE 253 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~a~vi~e 253 (465)
. .++++|++.+++||+.....+ ...+..... .+...+. ..|+++|+++++ ..++++|+++
T Consensus 80 ~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~~v~~~ 141 (392)
T 2z9v_A 80 I-----------SPDDVVLNLASGVYGKGFGYWAKRYSPHLLE---IEVPYNE----AIDPQAVADMLKAHPEITVVSVC 141 (392)
T ss_dssp C-----------CTTCCEEEEESSHHHHHHHHHHHHHCSCEEE---EECCTTS----CCCHHHHHHHHHHCTTCCEEEEE
T ss_pred c-----------CCCCEEEEecCCcccHHHHHHHHHcCCceEE---eeCCCCC----CCCHHHHHHHHhcCCCCcEEEEe
Confidence 3 158899999999998631111 111111100 1111111 138999999994 2356677777
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~ 331 (465)
+.++++|.+.+ +++|.++|++||+++|+||+|+ +|.. ......+ .+|+++ ++|+++++.++|+++++++
T Consensus 142 ~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~~--~~d~~~~s~sK~~~~~~g~G~l~~~~~ 212 (392)
T 2z9v_A 142 HHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM--KTHPEDC--KADIYVTGPNKCLGAPPGLTMMGVSER 212 (392)
T ss_dssp SEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--SCCGGGG--TCSEEEECSSSTTCCCSCCEEEEECHH
T ss_pred ccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc--ccccccc--cceEEEecCcccccCCCceeEEEECHH
Confidence 77666777665 8999999999999999999997 3322 1122222 356665 5698887666799999999
Q ss_pred HHhhccCCC--------------------CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHc
Q 012368 332 VASAINYGD--------------------HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 332 i~~~~~~~~--------------------~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
+++.+.+.. .....+.++.+++++.++++.+.+ ++..++++++.+++++.|+++ .
T Consensus 213 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g 290 (392)
T 2z9v_A 213 AWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--G 290 (392)
T ss_dssp HHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 887664210 112234567777777788876543 345667777777777777663 3
Q ss_pred CCCce-ee-eccceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHHHHHH
Q 012368 389 NPHVK-DV-RGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 389 ~~~~~-~~-~~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..... .. ...+.++++.++ .+..++.+.|.++ ||.+.++. ..+++|+++ +..++++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 291 LSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp CCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 32211 10 124677778773 3577899999997 99998763 247899995 4378999999999999999987
Q ss_pred hh
Q 012368 460 LD 461 (465)
Q Consensus 460 ~~ 461 (465)
+.
T Consensus 371 ~~ 372 (392)
T 2z9v_A 371 AG 372 (392)
T ss_dssp TT
T ss_pred cC
Confidence 64
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=225.91 Aligned_cols=317 Identities=14% Similarity=0.068 Sum_probs=211.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHHhhcC--CCeEE-ecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 012368 111 ALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVACSF--ADRVF-FSNTGTEANEAAIKFARKFQRHSNPDS 186 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~--~~~v~-~~~sG~eA~~~al~~a~~~t~~~~~~~ 186 (465)
.+++.++.+.+++.+++.+.... ......+...+++++++++++ .+.++ +++||++|+..+++.+.
T Consensus 14 ~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~---------- 83 (416)
T 3isl_A 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI---------- 83 (416)
T ss_dssp ECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC----------
T ss_pred eecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc----------
Confidence 35555555666666665542211 111112337889999999987 44554 89999999999998663
Q ss_pred CCCCceEEEEcCCcccCccc-cccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCCCCC
Q 012368 187 KEPATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 187 ~~~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~~~G 260 (465)
.++++|++.+++||+.... .....+. .+..+|.+ |+++|+++++.+++++|++++.++.+|
T Consensus 84 -~~gd~Vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG 150 (416)
T 3isl_A 84 -EPEDDVLIPIYGRFGYLLTEIAERYGA------------NVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTG 150 (416)
T ss_dssp -CTTCEEEEEESSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred -CCCCEEEEecCCcccHHHHHHHHhcCC------------eeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCc
Confidence 2689999999999983221 1111111 12222222 899999999733457777777667777
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccC
Q 012368 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY 338 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~ 338 (465)
.+.+ +++|.++|++||+++|+||+|+ +|.. ...... ..+|+++ ++|+++++.++|++++++++++.+.+
T Consensus 151 ~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 151 RIHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVDE--WKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAA 221 (416)
T ss_dssp EECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTTT--TTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred eecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchhh--cCCCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence 7665 8899999999999999999987 3221 112222 2356665 45988887889999999998877653
Q ss_pred CC--------------------------------------CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHH
Q 012368 339 GD--------------------------------------HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHY 377 (465)
Q Consensus 339 ~~--------------------------------------~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~ 377 (465)
.. .....+.+..+++++.++++.+.+ ++..++++++.++
T Consensus 222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 301 (416)
T 3isl_A 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301 (416)
T ss_dssp C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 111234577788888888876543 3566667777777
Q ss_pred HHHHHHHHHHcCCCceee-eccceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEecCCCCcHHH-HHHH
Q 012368 378 FKETLKQKLARNPHVKDV-RGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQE-LDQA 449 (465)
Q Consensus 378 l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~~~~~t~e~-i~~~ 449 (465)
+.+.|++. .+...... ...+.++++.++ .+..++.+.|+++ ||.+.++. .++++|++++...++++ ++++
T Consensus 302 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~ 379 (416)
T 3isl_A 302 LAAGIKAM--GLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFV 379 (416)
T ss_dssp HHHHHHHT--TCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHH
T ss_pred HHHHHHHc--CCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHH
Confidence 77777663 22211111 123567777773 4678899999887 99998753 24789999866566666 9999
Q ss_pred HHHHHHHHHHhh
Q 012368 450 VEILCKTLPVLD 461 (465)
Q Consensus 450 l~~l~~~l~~~~ 461 (465)
+++|+++++++.
T Consensus 380 ~~~l~~~~~~~~ 391 (416)
T 3isl_A 380 LAGLEAVLLRHN 391 (416)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999998764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=218.34 Aligned_cols=303 Identities=16% Similarity=0.085 Sum_probs=208.0
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ 192 (465)
.+|++++|+.+++.. + ..........+++++++++++ .+++++++||++|+..+++.+. .++++
T Consensus 12 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~-----------~~gd~ 77 (352)
T 1iug_A 12 LHPKALEALARPQLH--H-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF-----------APGER 77 (352)
T ss_dssp CCHHHHHHHHSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-----------CTTCE
T ss_pred CCHHHHHHhccCCCC--c-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc-----------CCCCe
Confidence 679999999887642 1 111112336789999999988 4689999999999999999764 15789
Q ss_pred EEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCH
Q 012368 193 FVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 193 ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
|++.+++|++...... ...+. .+..+|. .|+++|++ .++++|+++..++++|.+.+
T Consensus 78 vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~----~~~~~v~~~~~~nptG~~~~-- 139 (352)
T 1iug_A 78 VLVPVYGKFSERFYEIALEAGL------------VVERLDYPYGDTPRPEDVAK----EGYAGLLLVHSETSTGALAD-- 139 (352)
T ss_dssp EEEEECSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCTTTSCC----SSCSEEEEESEETTTTEECC--
T ss_pred EEEEeCCchhHHHHHHHHHcCC------------ceEEEeCCCCCCCCHHHHhc----cCCcEEEEEEecCCcceecC--
Confidence 9999999998751111 11111 1111221 15666655 24566777766666677665
Q ss_pred HHHHHHHHHHHHh--CCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccC----
Q 012368 267 EFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY---- 338 (465)
Q Consensus 267 ~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~---- 338 (465)
+++|.++|++| |+++|+||+|+ +|.. .+....++ +|++ +++|+++++.++|++++++++++.+.+
T Consensus 140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~ 212 (352)
T 1iug_A 140 --LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYY 212 (352)
T ss_dssp --HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSST
T ss_pred --HHHHHHHHHhhCCCCEEEEECCcc-ccCc--ceeccccC--eeEEEecCcccccCCCceeEEEECHHHHHHhhCCCce
Confidence 89999999999 99999999986 4322 11222223 5665 456988776678999999987765211
Q ss_pred ----------CCCcCCCCChHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHcCCCceeeec--cceEEEE
Q 012368 339 ----------GDHGSTFAGSPLVCNAAIAVLDKISNP--AFLASVSKKGHYFKETLKQKLARNPHVKDVRG--LGLIIGI 404 (465)
Q Consensus 339 ----------~~~~~t~~~~~~~~~aa~a~L~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~i 404 (465)
......++.++.+++++.++++.+.+. +..++++++.+++.+.|+++ +. ..... .+.++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~~~~ 287 (352)
T 1iug_A 213 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GL-RPVPKRFSPAVAAF 287 (352)
T ss_dssp TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TC-EESCSSBCTTCEEE
T ss_pred eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CC-cccccccCCeEEEE
Confidence 011223456788888888888876543 45555666666666666553 21 22222 5778888
Q ss_pred Eec--CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 405 EFD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 405 ~~~--~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++ .+..++.+.|.++||.+.++. .++++|++++...+++++++++++|+++++++.
T Consensus 288 ~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 349 (352)
T 1iug_A 288 YLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 349 (352)
T ss_dssp ECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred EcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence 874 357789999999999998763 237899999988899999999999999988764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=224.37 Aligned_cols=315 Identities=13% Similarity=0.039 Sum_probs=211.2
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
.+|.+++|+.+.+.. + ...++.....+++++++++++ .+ +|++++||++|+..+++.+. .+++
T Consensus 29 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-----------~~gd 94 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--N-FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-----------EEGD 94 (396)
T ss_dssp CCHHHHHHTTSCCCC--T-TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-----------CTTC
T ss_pred CCHHHHHHhcccccc--C-CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc-----------CCCC
Confidence 567888887665422 1 111122337789999999987 45 79999999999999999774 1588
Q ss_pred eEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+|++.+|+|+++.. ......+..... .+...+. ..|+++|++++++.++++|++++.++.+|.+.+ ++
T Consensus 95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 163 (396)
T 2ch1_A 95 RVLIAVNGIWAERAVEMSERYGADVRT---IEGPPDR----PFSLETLARAIELHQPKCLFLTHGDSSSGLLQP----LE 163 (396)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEE---EECCTTS----CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred eEEEEcCCcccHHHHHHHHHcCCceEE---ecCCCCC----CCCHHHHHHHHHhCCCCEEEEECCCCCCceecC----HH
Confidence 99999999998741 111111111100 1111111 138999999986423556666665555666655 88
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCC--------
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD-------- 340 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~-------- 340 (465)
+|.++|++||+++|+||+|. +|.. ..... ...+|++++| |+++++.++|++++++++++.+....
T Consensus 164 ~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 238 (396)
T 2ch1_A 164 GVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYW 238 (396)
T ss_dssp THHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG
T ss_pred HHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEe
Confidence 99999999999999999997 5432 11222 2346877655 99987777899999998887663210
Q ss_pred ---------------CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee--ccce
Q 012368 341 ---------------HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR--GLGL 400 (465)
Q Consensus 341 ---------------~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~ 400 (465)
....++.+..++.++.++|+.+.+ ++..++++++.+++.+.|+++ ......... ..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~ 316 (396)
T 2ch1_A 239 DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDPRHRLPT 316 (396)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSGGGBCTT
T ss_pred chHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCccccCCc
Confidence 112234677788888888887532 345667777777777777765 332211111 1234
Q ss_pred EEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 401 IIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 401 ~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++++.++ .+..++.+.|+++ ||.+.++. .++++|+++ ++.++++++++++++|+++++++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 317 VTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 7777763 3677899999875 99998753 247899998 567799999999999999998765
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-25 Score=217.86 Aligned_cols=289 Identities=15% Similarity=0.144 Sum_probs=200.8
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+..++++...+++++|+++++.+..+++++|++|+..+++.+. .++++|++.+++||+.........
T Consensus 45 ~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~-----------~~g~~vl~~~~~~~~~~~~~~~~~- 112 (386)
T 1cs1_A 45 DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-----------KPGDLLVAPHDCYGGSYRLFDSLA- 112 (386)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHHH-
T ss_pred ceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEecCCcHhHHHHHHHHH-
Confidence 34556777788999999999985566666778999999999763 158899999999998543211110
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
......+..++.+|+++|++++++ ++++|++++.++++|.+.+ +++|+++|++||+++|+||+|+++
T Consensus 113 --------~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 113 --------KRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp --------TTTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred --------HhcCCEEEEeCCCCHHHHHHhhcc-CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 011133456677799999999975 5778888888888887765 999999999999999999999976
Q ss_pred CCCCccccccccCCcccEEEecccCCC-ccce-eeEEeCH-HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~-~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
... .. . .++....+.+++|++++ |.++ |++++++ ++++.+.+.....+.+.++++++++.++++.+ +...+
T Consensus 180 ~~~-~~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 253 (386)
T 1cs1_A 180 ALQ-NP--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL--VPRME 253 (386)
T ss_dssp TTC-CG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred ccC-Cc--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHH--HHHHH
Confidence 432 11 1 23433344478999986 5676 9999986 78887764333344567888888877777533 23344
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCChHHHHHHHHHCCceEeec--C-
Q 012368 370 SVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--G- 428 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~--~- 428 (465)
++.++.+.+.+.|++ ++.+.. .++.|.++.+.+......+.+.|.++||++... +
T Consensus 254 ~~~~~~~~l~~~l~~----~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 329 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQT----QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGG 329 (386)
T ss_dssp HHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCS
T ss_pred HHHHHHHHHHHHHhc----CCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEcccCCC
Confidence 555555555555443 221111 234588888888544567788888899988741 1
Q ss_pred --------------------------CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 429 --------------------------KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 429 --------------------------~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.++++|++++...++++++.+.+.|+++
T Consensus 330 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 330 VESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp SSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1378999999977777777776666543
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=221.27 Aligned_cols=291 Identities=14% Similarity=0.085 Sum_probs=199.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012368 136 MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 136 ~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
....+...+++++++++++.+++++++||++|+..+++.+. .++++|++.+|.|+++........
T Consensus 58 ~~~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~-----------~~gd~Vl~~~~~y~~~~~~~~~~~---- 122 (404)
T 1e5e_A 58 RLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTIL-----------KAGDHLISDECLYGCTHALFEHAL---- 122 (404)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTHH----
T ss_pred CCcChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHh-----------CCCCEEEEeCCCchhHHHHHHHHH----
Confidence 34566678999999999997789999999999999998654 168899999999987654210000
Q ss_pred cCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCCCC
Q 012368 216 YRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AGALLVFDEVQCGLGR 294 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~gr 294 (465)
......+..+|.+|+++|++++++ ++++|++++.++++|.+.+ +++|.++|++ ||+++|+||+|.++..
T Consensus 123 -----~~~g~~~~~v~~~d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~ 192 (404)
T 1e5e_A 123 -----TKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI 192 (404)
T ss_dssp -----HHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT
T ss_pred -----HHcCCEEEEECCCCHHHHHHhcCC-CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh
Confidence 011123455666799999999975 5777777776666676654 9999999999 9999999999997643
Q ss_pred CCccccccccCCcccEEEecccCCC-ccce-eeEEeCHHHHh-hccCCCCcC-CCCChHHHHHHHHHHHHHhcCchHHHH
Q 012368 295 TGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGS-TFAGSPLVCNAAIAVLDKISNPAFLAS 370 (465)
Q Consensus 295 ~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~-t~~~~~~~~~aa~a~L~~~~~~~~~~~ 370 (465)
. ... .++....+.++||++++ |+|+ |++++++++++ .+.+..... +.+.+++.+.++.++|+.+ +...++
T Consensus 193 ~-~~~---~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~--~~~~~~ 266 (404)
T 1e5e_A 193 T-NPV---DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL--NIRMKA 266 (404)
T ss_dssp C-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH--HHHHHH
T ss_pred C-Ccc---ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH--HHHHHH
Confidence 2 221 23433334478999986 7998 99999999888 776544333 4567899999888888642 233444
Q ss_pred HHHHHHHHHHHHHHHH----------HcCCCcee----eeccceEEEEEecCChHHHHHHHHHCCceEeec--C------
Q 012368 371 VSKKGHYFKETLKQKL----------ARNPHVKD----VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--G------ 428 (465)
Q Consensus 371 ~~~~~~~l~~~l~~~~----------~~~~~~~~----~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~--~------ 428 (465)
..++.+.+.+.+++.. ..+|.+.. .++.|.++.+++........+.|.+.||++... |
T Consensus 267 ~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~ 346 (404)
T 1e5e_A 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLI 346 (404)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEE
T ss_pred HHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCCCceeccCCCCcceee
Confidence 4555555555444321 00111111 234588888887432234555666778854431 1
Q ss_pred --------------------C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 429 --------------------K-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 429 --------------------~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
. .+++|++++. |+++++++.|+++++.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 347 QHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALL 396 (404)
T ss_dssp ECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred ecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHH
Confidence 1 3689999876 789999999999887654
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=233.73 Aligned_cols=341 Identities=12% Similarity=0.072 Sum_probs=207.6
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~ 176 (465)
|+.||||.++.++ |+|++++.+++..... .+...+...+|+++++++++.++++||+||++|++.|+++++
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~--~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~ 110 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGDE--AYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLI 110 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCcc--eeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHh
Confidence 6689999887653 7899999888754221 223455678999999999999999999999999999999987
Q ss_pred HHhh-hcCCCCCCCC-ceEEEEcCCcccCcccccc-ccCCCCcCC-CCCCCCCCceEeeC---CCHHHHHhhcCC---CC
Q 012368 177 KFQR-HSNPDSKEPA-TEFVSFTNSFHGRTMGALA-LTSKEHYRS-PFEPVMPGVNFVEY---GNIEATRKLIQP---GK 246 (465)
Q Consensus 177 ~~t~-~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~---~d~~~le~~l~~---~~ 246 (465)
..+. ..+. ++ ++|+.. .||+.+..... ..+...... ...+.... ...++ .|+++|+++++. .+
T Consensus 111 ~~~~~~~G~----~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~Le~~i~~~~~~~ 183 (467)
T 2oqx_A 111 KKREQEKGL----DRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIKEAFDTG-VRYDFKGNFDLEGLERGIEEVGPNN 183 (467)
T ss_dssp HHHHHHHCC----CTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCTTTTCTT-SCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred ccccccCCC----CccceEEec--ccccccchhhhhccCcceeeccccccccCC-CCCCccCCcCHHHHHHHHHhcCCCc
Confidence 6420 0000 12 676665 47754321111 111100000 00000000 00111 289999999973 36
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------CCCCCccc-ccc--ccCCccc--EE
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----------LGRTGYLW-AHE--HYGIFPD--IM 311 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~gr~g~~~-~~~--~~~~~pd--i~ 311 (465)
+++|+++++++++|..+++.+++++|+++|++||++||+|+++.. .+..|... .+. .+ ..+| +.
T Consensus 184 ~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~ 262 (467)
T 2oqx_A 184 VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAM 262 (467)
T ss_dssp CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEE
T ss_pred eeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEE
Confidence 889999987776544677899999999999999999999965432 12233211 110 00 1134 35
Q ss_pred EecccCCCccce-eeEEeCHH-HH---hhccCC----CCcCCCCCh-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012368 312 TLAKPLAGGLPI-GAALVTEK-VA---SAINYG----DHGSTFAGS-PLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 312 t~sK~lg~G~~i-G~v~~~~~-i~---~~~~~~----~~~~t~~~~-~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
+++|+++. |+ |+++++++ ++ ..+.+. ....+++.. ..++++....++...+++..++..++.+++++.
T Consensus 263 s~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~ 340 (467)
T 2oqx_A 263 SAKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG 340 (467)
T ss_dssp ESSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ecccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 67898864 43 56667655 33 333211 111123322 222222223334332334566677788888888
Q ss_pred HHHHHHcCCCceeeeccceEEEEEec-----CC-----hHHHHHHH-HHCCceEeecCC----------------CCEEE
Q 012368 382 LKQKLARNPHVKDVRGLGLIIGIEFD-----VS-----ATPVVDAC-RDSGLLVLTAGK----------------GNVVR 434 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~~g~~~~i~~~-----~~-----~~~~~~~l-~~~Gv~v~~~~~----------------~~~lR 434 (465)
|++. .++.. +..|.++++.+. .+ ..++++.| .++||.+.+++. .+++|
T Consensus 341 L~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iR 415 (467)
T 2oqx_A 341 LEEI--GVVCQ---QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLR 415 (467)
T ss_dssp HHHT--TCCEE---EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEE
T ss_pred HHHC--CCeee---cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEE
Confidence 8765 34332 334666777662 12 34458888 789999987431 16899
Q ss_pred EecCCC-CcHHHHHHHHHHHHHHHHHhh
Q 012368 435 LVPPLI-ISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 435 i~~~~~-~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|+++.. +|+++|++++++|++++++++
T Consensus 416 l~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 416 LTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp ECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 999988 999999999999999998754
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=225.89 Aligned_cols=327 Identities=13% Similarity=0.092 Sum_probs=194.4
Q ss_pred EEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc------cCCCCCHHHHHHHHHHHhhcC--CCeEEecCC
Q 012368 92 LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV------SNMYYSIPQIELAKRLVACSF--ADRVFFSNT 163 (465)
Q Consensus 92 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~------~~~~~~~~~~~la~~l~~~~~--~~~v~~~~s 163 (465)
.++.++..|||+.++. ..+|.+++++.+++.+.... ......+...+++++++++++ .++|++++|
T Consensus 15 ~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 88 (400)
T 3vax_A 15 VPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG 88 (400)
T ss_dssp -------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred CcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence 4455777889987643 47899999999988753110 011122336789999999988 468999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCc-eEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHH
Q 012368 164 GTEANEAAIKFARKFQRHSNPDSKEPAT-EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEA 237 (465)
Q Consensus 164 G~eA~~~al~~a~~~t~~~~~~~~~~~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~ 237 (465)
|++|+..+++.+..++. .+++ .|++.++.|+++......+.. .. ..+..+|. .|+++
T Consensus 89 ~t~al~~~~~~l~~~~~-------~~gd~~Vl~~~~~~~~~~~~~~~~~~-~g---------~~~~~v~~~~~~~~d~~~ 151 (400)
T 3vax_A 89 ATESNNIALLGLAPYGE-------RTGRRHIITSAIEHKAVLEPLEHLAG-RG---------FEVDFLTPGPSGRISVEG 151 (400)
T ss_dssp HHHHHHHHHHTTHHHHH-------HHTCCEEEEETTSCHHHHHHHHHHHT-TT---------CEEEEECCCTTCCCCHHH
T ss_pred HHHHHHHHHHHHHHhhc-------cCCCCEEEECccccHhHHHHHHHHHh-cC---------CeEEEEccCCCCCcCHHH
Confidence 99999999998753321 0478 899999988876544332210 00 11222222 28999
Q ss_pred HHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cc
Q 012368 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AK 315 (465)
Q Consensus 238 le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK 315 (465)
|++++++ ++++|++++.++++|.+.+ +++|.++|++||++||+||+|+ ++... .+.... +|++++ +|
T Consensus 152 l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K 220 (400)
T 3vax_A 152 VMERLRP-DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK 220 (400)
T ss_dssp HHTTCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG
T ss_pred HHHhcCC-CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH
Confidence 9999975 5788888888777887765 8999999999999999999997 32221 222233 777755 59
Q ss_pred cCCCccceeeEE-eCH-HHH---hhccCCCC-------cCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHH
Q 012368 316 PLAGGLPIGAAL-VTE-KVA---SAINYGDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKET 381 (465)
Q Consensus 316 ~lg~G~~iG~v~-~~~-~i~---~~~~~~~~-------~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~ 381 (465)
.+| +.++|+++ +++ ++. ..+.+... ....+.++.+++++.++++.+.+ +++.++++++.+++.+.
T Consensus 221 ~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 299 (400)
T 3vax_A 221 IGA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAG 299 (400)
T ss_dssp GTS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred hCC-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 543 34578887 766 221 12222111 12334577788887788876533 34455555555555555
Q ss_pred HHHHHHcCCCceeeec----cceEEEEEec-CChHHHHHHHHHCCceEeecC-----------------C-----CCEEE
Q 012368 382 LKQKLARNPHVKDVRG----LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------------K-----GNVVR 434 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~----~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------------~-----~~~lR 434 (465)
|+ .+.+..... .+.++.+.+. .+..++.+.|. +||.+.++. . .+++|
T Consensus 300 L~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 373 (400)
T 3vax_A 300 LA-----STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLR 373 (400)
T ss_dssp HT-----TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEE
T ss_pred hC-----CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEE
Confidence 43 332222221 2456677663 46778999999 999887631 0 27899
Q ss_pred Eec-CCCCcHHHHHHHHHHHHHHHHH
Q 012368 435 LVP-PLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 435 i~~-~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
|++ +...+++++++++++|++++++
T Consensus 374 ls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 374 FSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEEEEC--------------------
T ss_pred EEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 999 8889999999999999988754
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=224.18 Aligned_cols=304 Identities=17% Similarity=0.139 Sum_probs=209.8
Q ss_pred CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~ 188 (465)
.+|+|++|+.+++.. + .++ .....+++++++++++. +++++|+||++|+..+++.+.
T Consensus 11 ~~~~v~~a~~~~~~~--~---~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~------------ 73 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--H---LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD------------ 73 (353)
T ss_dssp CCHHHHGGGGSCCCC--T---TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS------------
T ss_pred CCHHHHHHHhccccc--c---cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc------------
Confidence 678899988876643 1 122 23378899999999873 579999999999999998664
Q ss_pred CCceEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 189 PATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
+ ++|++.+++||++.. ......+. .+..+|. .|+++|++++++.++++|++++.++++|.+
T Consensus 74 ~-d~vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 140 (353)
T 2yrr_A 74 R-GPVLVLVNGAFSQRVAEMAALHGL------------DPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVL 140 (353)
T ss_dssp C-CCEEEEECSHHHHHHHHHHHHTTC------------CEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEE
T ss_pred C-CcEEEEcCCCchHHHHHHHHHcCC------------ceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCccee
Confidence 3 689999999998611 11111111 1222221 389999999864245667777766666776
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCCccceeeEEeCHHHHhhccC--
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVTEKVASAINY-- 338 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~~~i~~~~~~-- 338 (465)
.+ +++|.++|++||+++|+||+|. +|... .....++ +|++++ +|+++++.++|++++++++++.+..
T Consensus 141 ~~----~~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~ 211 (353)
T 2yrr_A 141 NP----AEAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKR 211 (353)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCS
T ss_pred cC----HHHHHHHHHHcCCeEEEEcCcc-ccccc--ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCC
Confidence 65 8899999999999999999994 65432 2222233 577764 6988765568999999998877751
Q ss_pred C-------------CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEE
Q 012368 339 G-------------DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402 (465)
Q Consensus 339 ~-------------~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~ 402 (465)
. .....++.++.+++++.++++.+.+ ++..++++++.+++.+.|+++ .+.........+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~ 289 (353)
T 2yrr_A 212 GWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVL 289 (353)
T ss_dssp CSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEE
T ss_pred CccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEE
Confidence 0 1122335677788888888876543 245666777777777777653 222111111145566
Q ss_pred EEEec--CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHH-HHHHHHHHHHHH
Q 012368 403 GIEFD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELD-QAVEILCKTLPV 459 (465)
Q Consensus 403 ~i~~~--~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~-~~l~~l~~~l~~ 459 (465)
++.++ .+..++.+.|.++||.+.++. .++++|++++...++++++ +++++|+++++.
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 290 VVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp EEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 77773 357789999999999998753 2468999987778899999 999999988764
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=219.48 Aligned_cols=344 Identities=18% Similarity=0.170 Sum_probs=205.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC-----CHHHHHHHHHHHhhcC--CCeEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY-----SIPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~-----~~~~~~la~~l~~~~~--~~~v~~~~sG~eA 167 (465)
+|..|||+.++. +.+|.|++++.+++......+ ..+. .+...+++++|+++++ .++|++++||++|
T Consensus 17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 567889887652 578999999999887631111 1111 1224689999999987 4689999999999
Q ss_pred HHHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC----CCCCCCceEeeC------CCHH
Q 012368 168 NEAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF----EPVMPGVNFVEY------GNIE 236 (465)
Q Consensus 168 ~~~al~~a~~-~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~d~~ 236 (465)
+..+++.+.. +..... .++++|++++|+||++.........-......+ ......+..+|. .|++
T Consensus 91 ~~~~~~~~~~~~~~~~~----~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~ 166 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQT----LQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVE 166 (432)
T ss_dssp HHHHHHHHHHHHHHHHH----HC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHH
T ss_pred HHHHHHHHHhhhhhccc----cCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHH
Confidence 9999998742 110000 047899999999998631111100000000000 000011222222 2789
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC----------CEEEEeccccCCCCCCccccccccCC
Q 012368 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG----------ALLVFDEVQCGLGRTGYLWAHEHYGI 306 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g----------~llI~DEv~~g~gr~g~~~~~~~~~~ 306 (465)
+|++++++ ++++|++++.++++|.+.+ +++|.++|++|| ++||+||+|. +|... ..... .
T Consensus 167 ~l~~~i~~-~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~--~~~~~--~ 236 (432)
T 3a9z_A 167 DILAAVRP-TTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR--VDVED--L 236 (432)
T ss_dssp HHHHTCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC--CCHHH--H
T ss_pred HHHHhccC-CceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc--cChhh--c
Confidence 99999975 5788888887777787766 789999999999 9999999995 44321 11111 2
Q ss_pred cccEE--EecccCCCccceeeEEeCHHH-HhhccCCCC-------cCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHH
Q 012368 307 FPDIM--TLAKPLAGGLPIGAALVTEKV-ASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKK 374 (465)
Q Consensus 307 ~pdi~--t~sK~lg~G~~iG~v~~~~~i-~~~~~~~~~-------~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~ 374 (465)
.+|++ +++|.+ |.++|++++++++ ...+.+..+ ..+++.|+++++++.++|+.+.+ ++..++++++
T Consensus 237 ~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~ 314 (432)
T 3a9z_A 237 GVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDI 314 (432)
T ss_dssp CCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35666 458976 4679999999876 444443211 12345688888888888886543 4566677777
Q ss_pred HHHHHHHHHHHHHcCCCc--e---eeeccceEEEEEecC---ChHHHHHHHH----HCCceEeec------------CC-
Q 012368 375 GHYFKETLKQKLARNPHV--K---DVRGLGLIIGIEFDV---SATPVVDACR----DSGLLVLTA------------GK- 429 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~--~---~~~~~g~~~~i~~~~---~~~~~~~~l~----~~Gv~v~~~------------~~- 429 (465)
.+++.+.|+++.. .... . .....+.+..+.+.. +..++.+.+. +.|+.+.+. +.
T Consensus 315 ~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~ 393 (432)
T 3a9z_A 315 RDYLEERLEAEFG-KRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIP 393 (432)
T ss_dssp HHHHHHHHHHHHG-GGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCC
T ss_pred HHHHHHHHHhccC-CcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCC
Confidence 7777777776421 1100 0 012345566666632 3455555442 123322221 11
Q ss_pred ----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 430 ----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 430 ----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++++||+++..+|++|+++++++|+++++++++
T Consensus 394 ~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 394 VDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp HHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 268999999888999999999999999987754
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=220.63 Aligned_cols=336 Identities=15% Similarity=0.127 Sum_probs=213.2
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a 175 (465)
.|+.|+||.++.++.. -++++.+++. .... .+.+.+...+|+++|+++++.+++++++||++|+..+++.+
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~--~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDE--AYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLA 110 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHH
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchh--hcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh
Confidence 4678999988765432 2466666654 2111 22345668899999999999889999999999999999876
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CCCceEee--CC-CHHHHHhhcCCCC---eE
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVE--YG-NIEATRKLIQPGK---TA 248 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-d~~~le~~l~~~~---~a 248 (465)
. + +++ |+.+++||+.+.......+......+..+. .+. ...+ ++ |+++|++++++++ ++
T Consensus 111 ~---~--------~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~-~~~~~~~~~d~~~l~~~i~~~t~~~~~ 176 (456)
T 2ez2_A 111 I---K--------PGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAG-LNIAFKGDIDLKKLQKLIDEKGAENIA 176 (456)
T ss_dssp C---C--------TTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTT-CCCSCTTCBCHHHHHHHHHHHCGGGEE
T ss_pred C---C--------CCC--EeccccccchhHHHHHHcCCEEEEeccccccccc-ccccccCCCCHHHHHHHHHhcccccee
Confidence 4 1 456 788999987754444433322111111100 000 0011 12 8999999986322 47
Q ss_pred EEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------CCCCCcccc-c-cccCCcccEEEec-
Q 012368 249 AVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----------LGRTGYLWA-H-EHYGIFPDIMTLA- 314 (465)
Q Consensus 249 ~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~gr~g~~~~-~-~~~~~~pdi~t~s- 314 (465)
+|+++ |+|+.+|. +++.+++++|+++|++||++||+||+|+. +.+.|.... . +..+..+|++++|
T Consensus 177 ~v~l~~p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~ 255 (456)
T 2ez2_A 177 YICLAVTVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSG 255 (456)
T ss_dssp EEEEESSBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEET
T ss_pred EEEEeccCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeC
Confidence 77777 66646664 66899999999999999999999999984 344453211 0 0123346888774
Q ss_pred ccCCC-ccceeeEEe-CHHHHhhccCCC---Cc-CCC-CChHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 012368 315 KPLAG-GLPIGAALV-TEKVASAINYGD---HG-STF-AGSPLVCNA-AIAVLDKISNPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 315 K~lg~-G~~iG~v~~-~~~i~~~~~~~~---~~-~t~-~~~~~~~~a-a~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
|.+++ | ++|++++ ++++++.+.... ++ .++ +.++..+.+ +.+.++.+. +++.++.+++.+++++.|.+.
T Consensus 256 kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~- 332 (456)
T 2ez2_A 256 KKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA- 332 (456)
T ss_dssp TTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC-
Confidence 55544 5 6899988 678877654211 11 112 223334444 555555442 456677777777777777662
Q ss_pred HcCCCceeeeccceEEEEEec-----CChHHH-----HHHH-HHCCceEeecCC----------------CCEEEEecCC
Q 012368 387 ARNPHVKDVRGLGLIIGIEFD-----VSATPV-----VDAC-RDSGLLVLTAGK----------------GNVVRLVPPL 439 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~-----~~~~~~-----~~~l-~~~Gv~v~~~~~----------------~~~lRi~~~~ 439 (465)
.++.. .+..|.++++.+. .+..++ .+.| .++||.+.+.+. .+.+||+++.
T Consensus 333 -g~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~ 409 (456)
T 2ez2_A 333 -GVPIV--EPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPR 409 (456)
T ss_dssp -TCCBC--SSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCT
T ss_pred -CCccc--cCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCC
Confidence 23221 2334677777651 123344 7777 578998654221 2689999988
Q ss_pred C-CcHHHHHHHHHHHHHHHHHhh
Q 012368 440 I-ISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 440 ~-~t~e~i~~~l~~l~~~l~~~~ 461 (465)
. ++++++++++++|++++++..
T Consensus 410 ~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 410 RVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHHHHhhhh
Confidence 7 899999999999999998755
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-25 Score=220.07 Aligned_cols=319 Identities=15% Similarity=0.091 Sum_probs=215.3
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
++||||..+.+. ++ |++++++.+++.... +...+...+++++++++++.+.+++++||++|+..+++.+.
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~----y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~- 99 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR----YLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLG- 99 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC----CSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTT-
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC----CCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhC-
Confidence 568999887653 32 899999999887531 22346688999999999997788999999999999998762
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCC
Q 012368 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG 257 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~ 257 (465)
. .++++|++.+++|++....+...+.... . .+..++. ...|+++|++++++ ++++|++ +++
T Consensus 100 -~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~---~~~d~~~l~~~i~~-~~~~v~~--~n~ 160 (399)
T 2oga_A 100 -I--------GPGDEVIVPSHTYIASWLAVSATGATPV-P---VEPHEDH---PTLDPLLVEKAITP-RTRALLP--VHL 160 (399)
T ss_dssp -C--------CTTCEEEEESSSCTHHHHHHHHTTCEEE-E---ECBCSSS---SSBCHHHHHHHCCT-TEEEECC--BCG
T ss_pred -C--------CCcCEEEECCCccHHHHHHHHHCCCEEE-E---EecCCCC---CCcCHHHHHHhcCC-CCeEEEE--eCC
Confidence 1 1578999999999986654333222111 1 1111100 01389999999975 5677764 333
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC-CCCccccccccCCcccEEEe----cccCCC-ccceeeEEeC-H
Q 012368 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-RTGYLWAHEHYGIFPDIMTL----AKPLAG-GLPIGAALVT-E 330 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g-r~g~~~~~~~~~~~pdi~t~----sK~lg~-G~~iG~v~~~-~ 330 (465)
+|.+.+ +++|.++|++||++||+||+|+.+. ..+. ..+..+|++++ ||.+++ | ++|+++++ +
T Consensus 161 -tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~ 229 (399)
T 2oga_A 161 -YGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDP 229 (399)
T ss_dssp -GGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCH
T ss_pred -cCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccccCEEEEeCCCCccCCcCC-ceEEEEeCCH
Confidence 455544 8999999999999999999997331 1221 12333588776 499997 8 99999986 7
Q ss_pred HHHhhccCCC-C-----------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee--ee
Q 012368 331 KVASAINYGD-H-----------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD--VR 396 (465)
Q Consensus 331 ~i~~~~~~~~-~-----------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~ 396 (465)
++++.+.+.. . +.++..+++.++++.++++.++ .+.++.+++.+++.+.| .+.+.+.. .+
T Consensus 230 ~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L----~~~~g~~~~~~~ 303 (399)
T 2oga_A 230 ELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGL----AGLPGIGLPVTA 303 (399)
T ss_dssp HHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHT----TTCTTCBCCCCC
T ss_pred HHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh----ccCCCccccCCC
Confidence 8776654211 1 2334568899988888887542 34455555555554444 34332211 11
Q ss_pred ccceEE--EEEe-cCChHHHHHHHHHCCceEeecCC--------------------------CCEEEEecCCCCcHHHHH
Q 012368 397 GLGLII--GIEF-DVSATPVVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 397 ~~g~~~--~i~~-~~~~~~~~~~l~~~Gv~v~~~~~--------------------------~~~lRi~~~~~~t~e~i~ 447 (465)
..+..+ .+.+ ..+..++.+.|.++||.+.+... .+.+||+++..+|++|++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~ 383 (399)
T 2oga_A 304 PDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQAL 383 (399)
T ss_dssp TTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHH
T ss_pred CCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHH
Confidence 122222 2333 24677899999999999876321 157999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 012368 448 QAVEILCKTLPVLDS 462 (465)
Q Consensus 448 ~~l~~l~~~l~~~~~ 462 (465)
+++++|+++++++++
T Consensus 384 ~~~~~l~~~~~~l~~ 398 (399)
T 2oga_A 384 RVIDAVREWAERVDQ 398 (399)
T ss_dssp HHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887653
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=227.26 Aligned_cols=323 Identities=11% Similarity=0.069 Sum_probs=204.7
Q ss_pred CCHHHHHHHHHHHhhccc-ccCCC-----CCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQANVLTH-VSNMY-----YSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
-++++++++.+++..... ....| ..+.++++++++.+..+ .++|++|+||++|+..+++++.. .
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~---- 180 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR--N---- 180 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC--S----
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC--C----
Confidence 567788888877766311 11122 22336666666665543 68999999999999999987641 1
Q ss_pred CCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-----Ce-EEEEEcccCCC
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KT-AAVFVEPIQGE 258 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~-a~vi~ep~~~~ 258 (465)
+++.|++.+|+|+++...+...+...... ++..+..+ ..|+++|++++++. ++ ++++++|.|++
T Consensus 181 ----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPt 250 (500)
T 3tcm_A 181 ----EKDGILVPIPQYPLYSASIALHGGALVPY----YLNESTGW--GLETSDVKKQLEDARSRGINVRALVVINPGNPT 250 (500)
T ss_dssp ----TTEEEEEEESCCTHHHHHHHHTTCEEEEE----ECBTTTTS--BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTT
T ss_pred ----CCCEEEEeCCCcHhHHHHHHHcCCEEEEE----ecccccCC--CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCC
Confidence 58999999999998876554443222111 11111000 13899999998631 34 45566665554
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--cccc----cccCC---ccc-EE--EecccC-C-Ccccee
Q 012368 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAH----EHYGI---FPD-IM--TLAKPL-A-GGLPIG 324 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~----~~~~~---~pd-i~--t~sK~l-g-~G~~iG 324 (465)
| .+++.+.+++|.++|++||+++|+||+|.++.+.+. ...+ ..++. ..+ ++ +|||++ | .|+|+|
T Consensus 251 G--~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 328 (500)
T 3tcm_A 251 G--QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGG 328 (500)
T ss_dssp C--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCE
T ss_pred c--ccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceE
Confidence 4 345889999999999999999999999998644321 1111 11211 112 33 789999 5 499999
Q ss_pred eEEe---CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc------------CchHHHHHHHHHHHHHHHHHHHHHcC
Q 012368 325 AALV---TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS------------NPAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 325 ~v~~---~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~------------~~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
|+++ ++++++.+.... ..+++.++++++++..+++..+ .+.+.++++++.+.+.+ .+.++
T Consensus 329 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~L~~~ 403 (500)
T 3tcm_A 329 YFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEH----AFNKL 403 (500)
T ss_dssp EEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTS
T ss_pred EEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHH----HHhcC
Confidence 9998 888888775322 3456778888988888775211 12233344444444444 44445
Q ss_pred CCceeeeccc-eEEEEEecCC--------------hHHHH-HHHHHCCceEeecCC------CCEEEEecCCCCcHHHHH
Q 012368 390 PHVKDVRGLG-LIIGIEFDVS--------------ATPVV-DACRDSGLLVLTAGK------GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 390 ~~~~~~~~~g-~~~~i~~~~~--------------~~~~~-~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~ 447 (465)
|.+....+.| .+.++.+..+ ...++ +.|.++||++.|+.. ...+|+++. .++++++
T Consensus 404 ~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~ 481 (500)
T 3tcm_A 404 EGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIP 481 (500)
T ss_dssp TTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHH
T ss_pred CCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHH
Confidence 5444444444 4445444211 12233 445567999997631 246899877 7899999
Q ss_pred HHHHHHHHHHHHhhh
Q 012368 448 QAVEILCKTLPVLDS 462 (465)
Q Consensus 448 ~~l~~l~~~l~~~~~ 462 (465)
+++++|.++++++.+
T Consensus 482 ~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 482 AVISRFTVFHEAFMS 496 (500)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=215.41 Aligned_cols=292 Identities=14% Similarity=0.087 Sum_probs=200.7
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+++++++++++.+.+++++||++|+..+++.+. .++++|++.++.||+..........
T Consensus 59 ~~r~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~- 126 (398)
T 1gc0_A 59 YSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLL-----------RPGDEVLLGNTLYGCTFAFLHHGIG- 126 (398)
T ss_dssp ----CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSCCSHHHHHHHHTGG-
T ss_pred ccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------cCCCEEEEeCCCchhHHHHHHHHHH-
Confidence 3455778899999999999987788889999999999999764 1578999999999987644321110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.....+.+++..|++++++++++ ++++|++++.++++|.+.+ +++|+++|++||+++|+||+|+.+
T Consensus 127 --------~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~- 192 (398)
T 1gc0_A 127 --------EFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP- 192 (398)
T ss_dssp --------GGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-
T ss_pred --------HcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-
Confidence 01123455666799999999975 6888888888777787765 999999999999999999999743
Q ss_pred CCCccccccccCCcccEEEecccCCC-ccce-eeEEeCHHHHh-hccCCCCc-CCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 294 RTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHG-STFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~-~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
..+... .++..+.+.+++|.+++ |.|+ |++++++++++ .+...... .+.+.+++.++++.++++.+ +...+
T Consensus 193 ~~~~~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 267 (398)
T 1gc0_A 193 YLQRPL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 267 (398)
T ss_dssp HHCCGG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred ccCCch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH--HHHHH
Confidence 222211 23444455578999996 6887 99999987665 45433233 34567888888888887643 33455
Q ss_pred HHHHHHHHHHHHHHHH----------HHcCCCce----eeeccceEEEEEecCChHHHHHHHHHCCceEee---c-----
Q 012368 370 SVSKKGHYFKETLKQK----------LARNPHVK----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLT---A----- 427 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~----------~~~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~---~----- 427 (465)
+..++.+.+.+.|++. +..+|... ..++.|.++.+++........+.|.+.|+.+.. +
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl 347 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESL 347 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCE
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCCCccee
Confidence 5666666666655441 00111000 013568888888843334456666777877643 1
Q ss_pred --------------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 428 --------------------G-KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 428 --------------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+ .++.+|++++...++++++.+.++|+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 348 AQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp EECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 0 0378999999999999999998888754
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=231.22 Aligned_cols=341 Identities=13% Similarity=0.052 Sum_probs=206.3
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH-Hhhc-------CCCeEEecCCHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL-VACS-------FADRVFFSNTGTEANEAA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l-~~~~-------~~~~v~~~~sG~eA~~~a 171 (465)
++||..+. .++.+|.+++++.+.+....+....+..+.++++++.+ .+.+ ..++|++|+|+++|+..+
T Consensus 106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~ 181 (546)
T 2zy4_A 106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI 181 (546)
T ss_dssp HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence 46665543 45677888888888775322222223445566666554 3332 137899999999999999
Q ss_pred HHHHH--HHhhhcCCCCCCCCceEEEEcCCcccCcccccccc-CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 172 IKFAR--KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 172 l~~a~--~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
++++. .++. +++.|++.+|+|+++...+...+ +..... .+..++..+. .|+++|++++..+..+
T Consensus 182 ~~~l~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~---v~~~~~~~~~--~d~~~l~~~~~~~~k~ 248 (546)
T 2zy4_A 182 FESLKLNGLLK--------AGDKVAIGMPVFTPYIEIPELAQYALEEVA---INADPSLNWQ--YPDSELDKLKDPAIKI 248 (546)
T ss_dssp HHHHHHTTSSC--------TTCEEEEEESCCHHHHHHHHSTTSCCEEEE---EECBGGGTTB--CCHHHHGGGGSTTEEE
T ss_pred HHHhhhhhcCC--------CCCEEEEeCCCCccHHHHHHHcCCCcEEEE---EecCcccCCC--CCHHHHHHhhCCCCeE
Confidence 98642 1222 68899999999999876532211 111000 0111110000 2789999988643334
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHH--HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-Cccceee
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDAC--DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~--~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~ 325 (465)
+++++|.|++| .+.+.+.+++|.++| ++||++||+||+|.+|............+....+.+|||.+| .|+|+||
T Consensus 249 v~l~~p~NPtG--~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 326 (546)
T 2zy4_A 249 FFCVNPSNPPS--VKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGV 326 (546)
T ss_dssp EEEESSCSSSC--BCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEE
T ss_pred EEEECCCCCCC--ccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEE
Confidence 45555555554 445889999999999 889999999999998854222111111123344568999998 5999999
Q ss_pred EEeCHH-HHhhccC------------------------------------CCCcCCCCChHHHHHHHH-H-HHHHhcC-c
Q 012368 326 ALVTEK-VASAINY------------------------------------GDHGSTFAGSPLVCNAAI-A-VLDKISN-P 365 (465)
Q Consensus 326 v~~~~~-i~~~~~~------------------------------------~~~~~t~~~~~~~~~aa~-a-~L~~~~~-~ 365 (465)
++++++ +++.+.. .....+.+.+.+.+.++. . ....+.+ +
T Consensus 327 ~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~ 406 (546)
T 2zy4_A 327 VAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEAD 406 (546)
T ss_dssp EEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTC
T ss_pred EEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccH
Confidence 999875 6665421 001223455666666532 1 1122222 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC------------------Ch-HHHHHHHHHCCceEee
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV------------------SA-TPVVDACRDSGLLVLT 426 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~------------------~~-~~~~~~l~~~Gv~v~~ 426 (465)
.+.+++++..+..++.+.+.+. .+.....+..|.++++++.. .. ..+.+.|.++||.+.|
T Consensus 407 ~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~p 485 (546)
T 2zy4_A 407 EYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLP 485 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeC
Confidence 4555555544444444444332 22211223445666777631 12 2355667789999998
Q ss_pred cCC----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 427 AGK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 427 ~~~----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.. ++++|+++. ..+++++++++++|+++++++.
T Consensus 486 G~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 486 GRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp SSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 642 368999876 4589999999999999988765
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=214.10 Aligned_cols=304 Identities=21% Similarity=0.159 Sum_probs=206.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.++|.+|+..+++.. ....+.+.....+...+++++++++++.+++++++||++|+..+++.+. .++
T Consensus 29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~-----------~~g 95 (412)
T 2cb1_A 29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALL-----------RPG 95 (412)
T ss_dssp BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTT
T ss_pred eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCC
Confidence 467777766555443 2333334444567789999999999998899999999999999998663 158
Q ss_pred ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
++|++.++.|++......... ......+.+++. |+++|++++++ ++++|++++.++++|.+.+ ++
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~-~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~----l~ 160 (412)
T 2cb1_A 96 DEVVAAKGLFGQTIGLFGQVL---------SLMGVTVRYVDP-EPEAVREALSA-KTRAVFVETVANPALLVPD----LE 160 (412)
T ss_dssp CEEEEETTCCHHHHHHHHHTT---------TTTTCEEEEECS-SHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HH
T ss_pred CEEEEeCCCchhHHHHHHHHH---------HHcCCEEEEECC-CHHHHHHHhcc-CCeEEEEeCCCCCCccccc----HH
Confidence 899999999987543221100 011123344554 59999999975 6788888888887787765 99
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCC-ccceeeEEeCH-----------------
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAG-GLPIGAALVTE----------------- 330 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~-G~~iG~v~~~~----------------- 330 (465)
+|+++|++||+++|+||+|++++..... ....+|+++ ++|.+++ |.|+|++++.+
T Consensus 161 ~i~~l~~~~~~~li~D~~~~~~~~~~~~-----~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
T 2cb1_A 161 ALATLAEEAGVALVVDNTFGAAGALCRP-----LAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLK 235 (412)
T ss_dssp HHHHHHHHHTCEEEEECGGGTTTTSCCG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC---
T ss_pred HHHHHHHHcCCEEEEECCCccccccCCc-----cccCCeEEEECCcccccCCCCcEEEEEEecccccccccccccccccc
Confidence 9999999999999999999866322211 123467765 7899986 78899887644
Q ss_pred -----------HHHhhccCCC-CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee---
Q 012368 331 -----------KVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV--- 395 (465)
Q Consensus 331 -----------~i~~~~~~~~-~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--- 395 (465)
++.+.++... ....+..+|..++.+...++.+ +...++..++.+++.+.|. +++.+..+
T Consensus 236 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~----~~~~v~~v~~p 309 (412)
T 2cb1_A 236 GQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQ----GHPKVKALRYP 309 (412)
T ss_dssp ----HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHH----TCTTCSEEECT
T ss_pred ccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHH----cCCCeeEEECC
Confidence 3333332211 1112345677776666666543 2334445556666655554 34433322
Q ss_pred ---------------eccceEEEEEecCChHHHHHHHHHCCceEeecC-----------------------------CCC
Q 012368 396 ---------------RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG-----------------------------KGN 431 (465)
Q Consensus 396 ---------------~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------------~~~ 431 (465)
++.|.++.+.+ .+...+.+.|.+.||.+ .+. ..+
T Consensus 310 ~~~~~p~~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (412)
T 2cb1_A 310 GLPEDPAHRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPG 387 (412)
T ss_dssp TSTTCTTHHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTT
T ss_pred CCCCCccHHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCC
Confidence 35678888888 56667777787889887 331 036
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHH
Q 012368 432 VVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 432 ~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
.+|++++...++++++.++++|++
T Consensus 388 ~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 388 LVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHC
T ss_pred eEEEEeccCCHHHHHHHHHHHHhh
Confidence 899999999999999999888864
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=215.50 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=200.2
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..+.++...+++++|+++++.+.+++++||++|+..+++.+. .++++||+.++.||+.........
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~-----------~~gd~Vi~~~~~y~~~~~~~~~~~ 126 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAML-----------RPGDHVVIPDDAYGGTFRLIDKVF 126 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHTG
T ss_pred ccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEeCCCcchHHHHHHHHH
Confidence 334556778889999999999998899999999999999999764 158899999999987653321110
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
......+.+++.+|+++|++++++ ++++|++++.++++|.+.+ +++|+++|++||+++|+||+|+.
T Consensus 127 ---------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~ 192 (392)
T 3qhx_A 127 ---------TGWNVEYTPVALADLDAVRAAIRP-TTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFAS 192 (392)
T ss_dssp ---------GGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTC
T ss_pred ---------HhcCcEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 111234566777899999999975 6888889988888887765 99999999999999999999974
Q ss_pred CCCCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 292 LGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
+ .. ....+..+|+++ ++|.+++ | +++|+++++ +++++.+....+..++..+|+.++++...++.+ +.
T Consensus 193 ~-~~-----~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l--~~ 264 (392)
T 3qhx_A 193 P-AL-----QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL--VL 264 (392)
T ss_dssp T-TT-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH--HH
T ss_pred c-cc-----CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH--HH
Confidence 3 21 222234567775 8899996 5 789999997 688777754444456677888888887777643 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceee------------------eccceEEEEEecC---ChHHHHHHHHHCCceEe
Q 012368 367 FLASVSKKGHYFKETLKQKLARNPHVKDV------------------RGLGLIIGIEFDV---SATPVVDACRDSGLLVL 425 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~ 425 (465)
..++..++.+++.+.| .++|.+..+ ++.|.++++++.. ....+...|...|+.+.
T Consensus 265 ~~~~~~~~~~~l~~~L----~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s 340 (392)
T 3qhx_A 265 RMQRHSENAAAVAEFL----AEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAES 340 (392)
T ss_dssp HHHHHHHHHHHHHHHH----HTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHH----hcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCC
Confidence 3444555555555544 344433222 5568899999943 23455555554554433
Q ss_pred ecC-----------------------CCCEEEEecCCCCcHHHHHHHHHHH
Q 012368 426 TAG-----------------------KGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 426 ~~~-----------------------~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.++ .++.+||++....++++++.+.++|
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 341 LGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp CCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 221 1367999988877777666665554
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=223.17 Aligned_cols=290 Identities=14% Similarity=0.134 Sum_probs=181.6
Q ss_pred HHHHHHHHHhhc-C-------CCeEEe--cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc---
Q 012368 142 QIELAKRLVACS-F-------ADRVFF--SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--- 208 (465)
Q Consensus 142 ~~~la~~l~~~~-~-------~~~v~~--~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--- 208 (465)
..++++.+++++ + .++|++ |+||++|+.+++.+...+. ++++|++.+|+|+++...+.
T Consensus 96 ~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~---------~gd~Vlv~~p~~~~~~~~~~~~~ 166 (448)
T 3meb_A 96 FPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWM---------PKAEFYMPSTTWPNHYGIYDKVF 166 (448)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHC---------TTCCEEEESSCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhC---------CCCEEEECCCCCHhHHHHHHhhH
Confidence 445666666554 4 368999 9999999998665443332 58899999999988875554
Q ss_pred -cccCCCCcCCCCCCC-CCC--ceEeeCCCHHHHHhhcCC--CCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 012368 209 -ALTSKEHYRSPFEPV-MPG--VNFVEYGNIEATRKLIQP--GKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGA 281 (465)
Q Consensus 209 -~~~~~~~~~~~~~~~-~~~--~~~~~~~d~~~le~~l~~--~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 281 (465)
..+...... +. ..+ .. -|+++|++.++. .+.++++ ++|.|++ |. .++.+.+++|.++|++||+
T Consensus 167 ~~~G~~v~~~----~~~~~~~~~~----~d~e~l~~~l~~~~~~~~~v~~~~p~NPt-G~-~~~~~~l~~i~~l~~~~~~ 236 (448)
T 3meb_A 167 NKLKVPYKEY----TYLRKDGELE----IDFSNTKKDIQSAPEKSIFLFHACAHNPS-GI-DFTEAQWKELLPIMKEKKH 236 (448)
T ss_dssp CTTTSCCEEE----CCBCTTSCSS----BCHHHHHHHHHHSCTTCEEEEESSSCTTT-CC-CCCHHHHHHHHHHHHHHTC
T ss_pred HhCCCeEEEE----eccccccCCC----cCHHHHHHHHHhCCCCcEEEEeCCCCCCC-Cc-CCCHHHHHHHHHHHHHCCC
Confidence 333221111 11 111 11 189999999872 2344444 4555544 43 4688999999999999999
Q ss_pred EEEEeccccCCCCCCc---ccccccc-CCccc---EEEecccCC-CccceeeE--Ee--------C-H----HHHhhccC
Q 012368 282 LLVFDEVQCGLGRTGY---LWAHEHY-GIFPD---IMTLAKPLA-GGLPIGAA--LV--------T-E----KVASAINY 338 (465)
Q Consensus 282 llI~DEv~~g~gr~g~---~~~~~~~-~~~pd---i~t~sK~lg-~G~~iG~v--~~--------~-~----~i~~~~~~ 338 (465)
++|+||+|.+|++.+. .+....+ +..++ +.+|||.+| .|+|+||+ ++ + + ++++.+..
T Consensus 237 ~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~ 316 (448)
T 3meb_A 237 IAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL 316 (448)
T ss_dssp EEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH
Confidence 9999999999876541 1222211 22234 557999999 49999998 66 3 4 56555543
Q ss_pred CCCcCCCCChHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHcCCC------ceee-eccceEEE
Q 012368 339 GDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLASVSKKGHYFKETLKQKLARNPH------VKDV-RGLGLIIG 403 (465)
Q Consensus 339 ~~~~~t~~~~~~~~~aa~a~L~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~-~~~g~~~~ 403 (465)
.....+.+.+.+++.++.++|+... -++..++++++.+++.+.|+++ ..+. +... +..|.+.+
T Consensus 317 ~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~--~~~~~~~~~~~~~~~~~~g~~~~ 394 (448)
T 3meb_A 317 QIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR--KTPGPGSKGTWDHILTAIGMFTF 394 (448)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCSTTTCCCTHHHHCCSSEEE
T ss_pred HHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCcCcccccceeCCCceEEEe
Confidence 2234455677888888888775321 0223344444444444444432 1122 2222 23355555
Q ss_pred EEecCChHHHHHHH-HHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 404 IEFDVSATPVVDAC-RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 404 i~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..+ . .+++..| .++||++.++. .||+++ ..++++|++++++|+++++++
T Consensus 395 ~~~--~-~~~~~~ll~~~gV~v~~G~----gRis~a-~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 395 TGL--T-PEHVDYLKEKWSIYLVKAG----GRMSMC-GLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp CCC--C-HHHHHHHHHHHCEEECSGG----GEEEGG-GCCTTTHHHHHHHHHHHHHHS
T ss_pred cCC--C-HHHHHHHHHhCCEEEeCCC----cEEEEe-cCCHHHHHHHHHHHHHHHHhc
Confidence 444 3 4566666 46799998853 288775 346777999999999998754
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=219.25 Aligned_cols=329 Identities=14% Similarity=0.094 Sum_probs=210.7
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHh-hccccc--C-CC-CCHHHHHH----HHHHHhhcCCCe-EEecCCHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVS--N-MY-YSIPQIEL----AKRLVACSFADR-VFFSNTGTEAN 168 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~-~~~~~~--~-~~-~~~~~~~l----a~~l~~~~~~~~-v~~~~sG~eA~ 168 (465)
.++|+.++.+ + +|+|++|+.+++. ....++ . .+ ..+...++ +++++++++.+. .+++++|++|+
T Consensus 25 ~~~~~~~~~~---~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~ 98 (405)
T 2vi8_A 25 KIELIASENF---V---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQAN 98 (405)
T ss_dssp SEECCTTCCC---C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred ceeeccCccc---C---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence 4677765432 3 8999999999885 322111 1 11 22333444 468898888544 45567789999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc--cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (465)
..+++.+. .++++|++.+++|++...... ...+.. ......+..+.. ...|+++|++++++.+
T Consensus 99 ~~a~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~~d~~~l~~~i~~~~ 163 (405)
T 2vi8_A 99 MAVYFTVL-----------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQ-YNFVAYGVDPET---HVIDYDDVREKARLHR 163 (405)
T ss_dssp HHHHHHHC-----------CTTCEEEEECGGGTCCTTTTCTTSHHHHH-SEEEEECBCTTT---CSBCHHHHHHHHHHHC
T ss_pred HHHHHHhc-----------CCCCEEEEecccccchhcccchhhhccce-eEEEeccccccc---CCcCHHHHHHHHHhcC
Confidence 99999774 158899999998766542111 111110 000000100000 0138999999986424
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC-cccEE--EecccCCCccce
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLAGGLPI 323 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~--t~sK~lg~G~~i 323 (465)
+++|++.|.+. |...+ +++|+++|++||++||+||+|+ +|+.+.... ...+ .+|++ ++||+++|+..
T Consensus 164 ~~~v~~~~~~~--~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~--~~~~~~~di~~~s~sK~~~g~~g- 233 (405)
T 2vi8_A 164 PKLIVAAAAAY--PRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGLH--PNPVPYAHFVTTTTHKTLRGPRG- 233 (405)
T ss_dssp CSEEEECCSSC--CSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS--CCSTTTCSEEEEESSSTTCCCSC-
T ss_pred CeEEEEeCCCC--CccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCcC--CCccccCCEEEEeccccCCCCCC-
Confidence 56777755332 32222 8999999999999999999998 433322111 1111 36766 78999985433
Q ss_pred eeEEeCHHHHhhccCCCCcCCCCC-hHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc
Q 012368 324 GAALVTEKVASAINYGDHGSTFAG-SPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG 399 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~-~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g 399 (465)
|++++++++++.+.+.....++++ ++..++++.++++.+.+ ++..++++++.+++.+.|+++ .+.... ..+.+
T Consensus 234 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~~~ 310 (405)
T 2vi8_A 234 GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTLVS-GGTDN 310 (405)
T ss_dssp EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG-GSCSS
T ss_pred eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeEec-CCCCc
Confidence 999999998887754322233443 56677777788876544 456667777777777777653 222111 12457
Q ss_pred eEEEEEec---CChHHHHHHHHHCCceEeecC---------CCCEEEEecCC----CCcHHHHHHHHHHHHHHHHHhh
Q 012368 400 LIIGIEFD---VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 400 ~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~----~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++++.+. .+..++.+.|.++||.+.++. .++.+|++++. .++++++++++++|++++++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 311 HLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp SEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred eEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 88888874 256788899999999998752 13679999886 5789999999999999987664
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=221.42 Aligned_cols=328 Identities=15% Similarity=0.087 Sum_probs=210.3
Q ss_pred CCCHHHHHHHHHHHhhccccc--CCCCC----HHHHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 012368 114 HGDADWIKAVVDQANVLTHVS--NMYYS----IPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSN 183 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~--~~~~~----~~~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~ 183 (465)
++++.+.+++.+++....... .+... ..+.++++++++.++. +.+++++||++|+..++++++.++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 456889999999887643221 11112 2255778888888873 4899999999999999999986543111
Q ss_pred CCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
+. +++.|++..++|+.+...+...+.... . .+... +.. .|+++|++++++ ++++|+++..++..|.+
T Consensus 155 g~---~~~~Vi~~~~~h~~~~~~~~~~G~~~~-~---v~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~p~nptG~~ 222 (497)
T 3mc6_A 155 GI---TEPEIIAPVTAHAGFDKAAYYFGMKLR-H---VELDPTTYQ----VDLGKVKKFINK-NTVLLVGSAPNFPHGIA 222 (497)
T ss_dssp CC---SSCEEEEETTSCHHHHHHHHHSCCEEE-E---ECBCTTTCS----BCTTTTGGGCCS-SEEEEEEETTCTTTCCC
T ss_pred CC---CCceEEEeCCccHHHHHHHHHcCCeEE-E---EecCcccCc----CCHHHHHHHHhh-CCEEEEEECCCCCCCcC
Confidence 10 246899988888765543333221111 1 11111 111 268999999975 56777777766666776
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC-----C--c--cccccccCCcccEEE--ecccCCCccceeeEEeCHH
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-----G--Y--LWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~-----g--~--~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~ 331 (465)
.+ +++|+++|++||++||+||+|.++.+. | . .+.....++ |+++ ++|.+.+|.++|+++++++
T Consensus 223 ~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~~~g~~~~~~~ 296 (497)
T 3mc6_A 223 DD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPKGSSVIMYRNS 296 (497)
T ss_dssp CS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCSSCEEEECSSH
T ss_pred CC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCCCceeEEecCH
Confidence 55 889999999999999999999864321 1 1 122233343 6655 4598878899999999876
Q ss_pred HHhhccC----CCCcC-----CCC--ChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee-e
Q 012368 332 VASAINY----GDHGS-----TFA--GSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV-R 396 (465)
Q Consensus 332 i~~~~~~----~~~~~-----t~~--~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~ 396 (465)
.+..... ....+ ++. .+....++..++++.+.. +++.++..++.+++++.|++. .+.+..+ +
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~~g~~~~~~ 373 (497)
T 3mc6_A 297 DLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN---IPDLDIMGN 373 (497)
T ss_dssp HHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CTTCEECSC
T ss_pred HHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEecC
Confidence 6554321 11111 111 122223444444554433 344555666666666666552 2332222 3
Q ss_pred ccceEEEEEec-CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 397 GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 397 ~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.+.++.+... .+..++.+.|.++||.+........+|++++ .+|++++++++++|+++++++.++
T Consensus 374 ~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 374 PRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp CCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred CCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 45666666653 4678899999999999887654456899988 789999999999999999887654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=214.57 Aligned_cols=331 Identities=12% Similarity=0.047 Sum_probs=195.4
Q ss_pred EEecccCcccccCCCC--CHHHHHHHHHHHhh-cccccC--CCCCHHHHHHHHHHHhhcC----CCeEEe--cCCHHHHH
Q 012368 100 YLDLSSGIAVNALGHG--DADWIKAVVDQANV-LTHVSN--MYYSIPQIELAKRLVACSF----ADRVFF--SNTGTEAN 168 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~--~p~v~~a~~~~~~~-~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~--~~sG~eA~ 168 (465)
.|||..+.+....++. .|.+.+++.+.+.. ....+. .+..+.++++++++.+.++ .++|++ |+||++|+
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al 109 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence 5777777652223332 24678877776553 111111 1222346666666665544 788977 99999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhcC--C
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQ--P 244 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~--~ 244 (465)
..+++++..+++ ++++|++.+|+|+++.......+...... +.. .+... |++++++.++ .
T Consensus 110 ~~~~~~l~~~~~--------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~----d~~~l~~~l~~~~ 173 (401)
T 7aat_A 110 RVGANFLQRFFK--------FSRDVYLPKPSWGNHTPIFRDAGLQLQAY----RYYDPKTCSL----DFTGAMEDISKIP 173 (401)
T ss_dssp HHHHHHHHHHCT--------TCCEEEEEESCCTTHHHHHHHTTCEEEEE----ECEETTTTEE----CHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcc--------CCCEEEEcCCCchhHHHHHHHcCCeeEee----eeeccccCcc----CHHHHHHHHHhCC
Confidence 999988776553 68999999999988865544333211110 110 01111 6776666664 2
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---ccccc----ccCCcccEEEecccC
Q 012368 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE----HYGIFPDIMTLAKPL 317 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~~----~~~~~pdi~t~sK~l 317 (465)
.++++|++...++++|. .++.+.+++|.++|++||+++|+||+|.+|+..+. ..... ..+...-+.++||.+
T Consensus 174 ~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 252 (401)
T 7aat_A 174 EKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM 252 (401)
T ss_dssp TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc
Confidence 34555555444444444 46889999999999999999999999998866542 11121 112223345899999
Q ss_pred C-CccceeeEEe---CHH----HHhhccCCCCcCCCCChHHHHHHHHHHHHHh------c--CchHHHHHHHHHHHHHHH
Q 012368 318 A-GGLPIGAALV---TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKI------S--NPAFLASVSKKGHYFKET 381 (465)
Q Consensus 318 g-~G~~iG~v~~---~~~----i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~------~--~~~~~~~~~~~~~~l~~~ 381 (465)
+ .|+|+||+++ +++ +...+.......+.+.+.+++.++..+++.. . .++..++++++.+++.+.
T Consensus 253 ~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 332 (401)
T 7aat_A 253 GLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN 332 (401)
T ss_dssp CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 5999999886 555 3333332222334455566666666556421 0 122334444455555555
Q ss_pred HHHHHHcC-CCceee-eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 382 LKQKLARN-PHVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 382 l~~~~~~~-~~~~~~-~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
|++. .. +.+... +..|.+.++.+ +...+...+.++||.+.++ +||+++.. ++++|++++++|++++
T Consensus 333 L~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~~~-----~Ris~~~~-~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 333 LKKE--GSSHNWQHITDQIGMFCFTGL--KPEQVERLTKEFSIYMTKD-----GRISVAGV-ASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHT--TCCSCCHHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred HHhc--CCCCCCceecCCcceEEecCC--CHHHHHHHHHhCCEeccCC-----CeEEeccC-ChhhHHHHHHHHHHHh
Confidence 5442 11 112222 23345555443 3444433345789998753 58888754 5556999999998875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=222.44 Aligned_cols=326 Identities=9% Similarity=0.047 Sum_probs=202.2
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-C-------CCeEE--ecCCHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F-------ADRVF--FSNTGTEAN 168 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~-------~~~v~--~~~sG~eA~ 168 (465)
.+|||..+.+. -..++|.+.+++.++.....+ .+.+.....++++.+++++ + .++|. .+++|++|+
T Consensus 42 ~~i~l~~g~~~--d~~~~~~v~~a~~~a~~~~~~--~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~ 117 (409)
T 4eu1_A 42 RKVNLSIGVYR--DDADQPFVLECVKQATLGTNM--DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGAL 117 (409)
T ss_dssp SCEECCCSSCC--CTTSCCCCCHHHHTCCCCSCC--CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHH
T ss_pred CceeeeeeEEE--CCCCCEeecHHHHhcCccccc--cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHH
Confidence 46888887641 123667788888877322211 1112222345555555543 3 45674 499999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC--CCCceEeeCCCHHHHHhhcC--C
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV--MPGVNFVEYGNIEATRKLIQ--P 244 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l~--~ 244 (465)
.++..+++.+++ ++++|++.+|+|+++...+...+...... +. ..+... |+++|++.++ +
T Consensus 118 ~~~~~~~~~~~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~~~~----d~~~l~~~l~~~~ 181 (409)
T 4eu1_A 118 RIGGDLLNRFVA--------NCNRIYGPDVGYPNHESIFAKAGMELTPY----SYYDPATKGL----NLAGMLECLDKAP 181 (409)
T ss_dssp HHHHHHGGGTSS--------SCCEEEEESSCCTHHHHHHHHTTCEEEEE----CCEETTTTEE----CHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcC--------CCCEEEEeCCCcHhHHHHHHHcCCeEEEE----EeecCcCCcC----cHHHHHHHHHhCC
Confidence 988776665553 57999999999988865554433221111 11 011111 8999999985 2
Q ss_pred CCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---ccccc-ccCCcccE---EEeccc
Q 012368 245 GKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE-HYGIFPDI---MTLAKP 316 (465)
Q Consensus 245 ~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~~-~~~~~pdi---~t~sK~ 316 (465)
.+.++++ ++|.|++| ..++.+.+++|.++|++||+++|+||+|.+|++.+. ..... ..+..+++ .+|||.
T Consensus 182 ~~~~~i~~~~p~NPtG--~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 259 (409)
T 4eu1_A 182 EGSVILVHACAHNPTG--VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKN 259 (409)
T ss_dssp TTCEEEEESSSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTT
T ss_pred CCcEEEEECCCCCCCC--CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccc
Confidence 3444544 56665554 346889999999999999999999999999876551 11221 12333444 479999
Q ss_pred CC-CccceeeE---EeCHH----HHhhccCCCCcCCCCChHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHH
Q 012368 317 LA-GGLPIGAA---LVTEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLASVSKKGHYFKE 380 (465)
Q Consensus 317 lg-~G~~iG~v---~~~~~----i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--------~~~~~~~~~~~~~~l~~ 380 (465)
+| .|+|+||+ +++++ +++.+.......+++.+++++.++.++|+... .++..++++++.+++.+
T Consensus 260 ~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (409)
T 4eu1_A 260 FGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVS 339 (409)
T ss_dssp SSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 59999995 56677 55555432234556677899999888887321 12334444555555555
Q ss_pred HHHHHHHcCCC-ceeeec-cceEEEEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 381 TLKQKLARNPH-VKDVRG-LGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 381 ~l~~~~~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.|++. ..+. +....+ .|.+.++.+ + .+++..|+ ++||++.|+ .||+++ ..+++++++++++|++++
T Consensus 340 ~L~~~--g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~~~gv~v~p~-----~Ri~~~-~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 340 ELKAC--GSVHDWSHIERQVGMMAYTGL--T-REQVELLRSEYHIYMTLN-----GRAAVS-GLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp HHHHT--TCCSCCHHHHHSCSSEEECCC--C-HHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred HHHhc--CCCCCcceecCCceEEEEeCC--C-HHHHHHHHHcCCEEEcCC-----CEEEEE-ecCHhhHHHHHHHHHHHh
Confidence 55442 1111 222223 344555433 3 34566666 569999875 378776 456777999999998875
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=214.40 Aligned_cols=295 Identities=15% Similarity=0.176 Sum_probs=197.8
Q ss_pred HHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012368 119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
+.+++.+.+... .+++.+...+++++++++++.+++++++||++|+..+++.+. . .++++|++.++
T Consensus 21 ~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~--~--------~~gd~v~~~~~ 86 (374)
T 3uwc_A 21 YLNDLREFIKTA----DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLN--I--------GAGDEVITCAN 86 (374)
T ss_dssp HHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEEESS
T ss_pred HHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCCCEEEECCC
Confidence 566666655543 234567789999999999998899999999999999998762 1 26889999999
Q ss_pred CcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012368 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
+||+....+...+.. +..++.+ |+++|++++++ ++++|+ |++++ |...+ +++|.
T Consensus 87 ~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~--~~n~~-G~~~~----~~~i~ 145 (374)
T 3uwc_A 87 TFIASVGAIVQAGAT-------------PVLVDSENGYVIDPEKIEAAITD-KTKAIM--PVHYT-GNIAD----MPALA 145 (374)
T ss_dssp SCHHHHHHHHHTTCE-------------EEEECBCTTSSBCGGGTGGGCCT-TEEEEC--CBCGG-GCCCC----HHHHH
T ss_pred ccHHHHHHHHHcCCE-------------EEEEecCCCCCcCHHHHHHhCCC-CceEEE--EeCCc-CCcCC----HHHHH
Confidence 999887554333221 1222222 88999999975 566666 65544 55444 99999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCC-ccceeeEEeC-HHHHhhccCCC-------
Q 012368 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALVT-EKVASAINYGD------- 340 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~~-~~i~~~~~~~~------- 340 (465)
++|++||+++|+||+|+.+.. +.....+..+|++++| |++++ |. .|+++++ +++++.+....
T Consensus 146 ~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (374)
T 3uwc_A 146 KIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINR 220 (374)
T ss_dssp HHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEET
T ss_pred HHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCcccc
Confidence 999999999999999984321 2223344456888777 99987 65 7888875 45655443211
Q ss_pred -----CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC-ceee--e--ccce--EEEEEecC
Q 012368 341 -----HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDV--R--GLGL--IIGIEFDV 408 (465)
Q Consensus 341 -----~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~--~--~~g~--~~~i~~~~ 408 (465)
.+.++..+++.++++...++.+ +++.++.+++.+++++.|.++ +. +... . +... .+.+.. .
T Consensus 221 ~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~ 293 (374)
T 3uwc_A 221 DVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDL----SEFIDVPVRREGVYHVFHIYVLRV-K 293 (374)
T ss_dssp TEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGG----TTTEECCCCCTTEECCCSSEEEEE-T
T ss_pred CccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCeEEeccCCCCCceeeEEEEEEc-C
Confidence 1223344566655554444322 345566666666666665543 21 1111 0 1122 122332 3
Q ss_pred ChHHHHHHHHHCCceEeecCC--------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 409 SATPVVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~--------------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+..++.+.|.++||.+.++.. .+.+|++++..+|++||++++++|++++++.
T Consensus 294 ~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 294 YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 677899999999999876530 1579999999999999999999999998753
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-24 Score=218.15 Aligned_cols=326 Identities=9% Similarity=0.025 Sum_probs=201.4
Q ss_pred CCHHHHHHHHHHHhhcc------cccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 012368 115 GDADWIKAVVDQANVLT------HVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAIKFARKFQRHSN 183 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~al~~a~~~t~~~~ 183 (465)
.+..+.+++.+++.... +....+..+.++++++++.+..+ .++|++|+|+++|+..+++++..-.
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~g---- 177 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGG---- 177 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCC----
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCC----
Confidence 35667777777776532 11112223457778888876653 6899999999999999998665200
Q ss_pred CCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCeEEEEEcccCCC
Q 012368 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVEPIQGE 258 (465)
Q Consensus 184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a~vi~ep~~~~ 258 (465)
..+++.|++..|+|+.+...+...+...... +......+ .-|+++|++++++ +..++++++|.|++
T Consensus 178 ---d~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~----~~~~~~~~--~~d~~~le~~l~~~~~~~~~k~i~l~np~NPT 248 (498)
T 3ihj_A 178 ---GKSRTGVMIPIPQYPLYSAVISELDAIQVNY----YLDEENCW--ALNVNELRRAVQEAKDHCDPKVLCIINPGNPT 248 (498)
T ss_dssp ---GGGSEEEEEEESCCTHHHHHHHHTTCEEEEE----ECBGGGTT--BCCHHHHHHHHHHHTTTSEEEEEEEESSCTTT
T ss_pred ---CCCCCEEEEeCCCchhHHHHHHHcCCEEEEe----eccccccC--CCCHHHHHHHHHhhhccCCCeEEEEECCCCCC
Confidence 0013589999999988775544333221100 10000000 0189999999863 23345555665555
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--ccccccc----------CC-cccEEEecccC-C-Cccce
Q 012368 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHY----------GI-FPDIMTLAKPL-A-GGLPI 323 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~~~----------~~-~pdi~t~sK~l-g-~G~~i 323 (465)
| .+++.+.+++|.++|++||++||+||+|..+.+.+. ...+... ++ ..-+.+|||.+ | .|+|+
T Consensus 249 G--~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~ 326 (498)
T 3ihj_A 249 G--QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG 326 (498)
T ss_dssp C--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCC
T ss_pred C--CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccce
Confidence 4 345889999999999999999999999988744331 1111110 11 11234789999 4 59999
Q ss_pred eeEE---eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-----------hc-CchHHHHHHHHHHHHHHHHHHHHHc
Q 012368 324 GAAL---VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----------IS-NPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 324 G~v~---~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-----------~~-~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
||++ +++++++.+... .....+.+.+++.++.++++. +. .+...++++++.+. +.+.+.+
T Consensus 327 G~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~----l~~~L~~ 401 (498)
T 3ihj_A 327 GYMEVINLHPEIKGQLVKL-LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKL----TEDLFNQ 401 (498)
T ss_dssp EEEEEESCCHHHHHHHHHH-HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHH-HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHH----HHHHHhc
Confidence 9998 688888877542 224456788888877766641 00 01222333344444 4444445
Q ss_pred CCCceeeeccc-eEEEEEecC-------------ChHHH-HH-HHHHCCceEeecCC------CCEEEEecCCCCcHHHH
Q 012368 389 NPHVKDVRGLG-LIIGIEFDV-------------SATPV-VD-ACRDSGLLVLTAGK------GNVVRLVPPLIISEQEL 446 (465)
Q Consensus 389 ~~~~~~~~~~g-~~~~i~~~~-------------~~~~~-~~-~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i 446 (465)
+|.+....+.| .++++.++. ...++ +. .|.++||.+.|+.. ...+|+++ ..+++++
T Consensus 402 ~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l 479 (498)
T 3ihj_A 402 VPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKL 479 (498)
T ss_dssp STTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHH
T ss_pred CCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHH
Confidence 55555444444 445545531 22333 44 45578999988521 24789977 4799999
Q ss_pred HHHHHHHHHHHHHhhh
Q 012368 447 DQAVEILCKTLPVLDS 462 (465)
Q Consensus 447 ~~~l~~l~~~l~~~~~ 462 (465)
++++++|.++++++.+
T Consensus 480 ~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 480 KTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-24 Score=210.33 Aligned_cols=309 Identities=13% Similarity=0.092 Sum_probs=204.7
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+.+.+++...++... ....+.+..++++...+++++|+++++.+.+++++||++|+..+++.+. .++
T Consensus 31 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~-----------~~g 98 (389)
T 3acz_A 31 TFCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFL-----------QKG 98 (389)
T ss_dssp BBCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTC-----------CTT
T ss_pred ceecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-----------CCC
Confidence 3556665444333222 1223444566788899999999999997788889999999999988653 158
Q ss_pred ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
++|++.+++||+......... ......+.+++..|++++++++++ ++++|++++.++++|.+.+ ++
T Consensus 99 d~vl~~~~~y~~~~~~~~~~~---------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~ 164 (389)
T 3acz_A 99 DHLIAGDTLYGCTVSLFTHWL---------PRFGIEVDLIDTSDVEKVKAAWKP-NTKMVYLESPANPTCKVSD----IK 164 (389)
T ss_dssp CEEEEESSCCHHHHHHHHHHH---------HHTTCEEEEECTTCHHHHHHTCCT-TEEEEEEESSCTTTCCCCC----HH
T ss_pred CEEEEeCCCchHHHHHHHHHH---------HHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecC----HH
Confidence 899999999998654321100 011133456677799999999975 5788888888887887765 99
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC-ccce-eeEEeCH-HHHhhccCCCCcCCC
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTE-KVASAINYGDHGSTF 345 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~-~i~~~~~~~~~~~t~ 345 (465)
+|.++|++||+++|+||+|+++. .+... +..+|++ +++|++++ |.|+ |++++++ ++++.+.........
T Consensus 165 ~i~~~~~~~~~~livD~~~~~~~-~~~~~-----~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~ 238 (389)
T 3acz_A 165 GIAVVCHERGARLVVDATFTSPC-FLKPL-----ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGS 238 (389)
T ss_dssp HHHHHHHHHTCEEEEECTTTCTT-TCCGG-----GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCEEEEECCCcccc-ccCcc-----ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCC
Confidence 99999999999999999998652 22221 2346777 68899986 6888 9999998 888877543221223
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH----------HcCCCce----eeeccceEEEEEecCChH
Q 012368 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKL----------ARNPHVK----DVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~----------~~~~~~~----~~~~~g~~~~i~~~~~~~ 411 (465)
+.+++.+.++...|+.+ +...++..++...+.+.|++.. ..+|... ..++.|.++.+.+.. ..
T Consensus 239 ~~~~~~~~~~~~~l~~l--~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-~~ 315 (389)
T 3acz_A 239 LMAPMDAFLCARGMKTL--PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-FE 315 (389)
T ss_dssp CCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-HH
T ss_pred CCCHHHHHHHHcCccHH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-HH
Confidence 45778887777777633 2234445555555555555420 1111110 113568888998853 55
Q ss_pred HHHHHHHHCCceEeec--C--------------------------C-CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTA--G--------------------------K-GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~--~--------------------------~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
...+.|.+.|+++... | . .+.+|++++...+++ +++.|.++++
T Consensus 316 ~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~----li~~l~~al~ 387 (389)
T 3acz_A 316 AAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDD----IIADLKQALE 387 (389)
T ss_dssp HHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHH----HHHHHHHHHT
T ss_pred HHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHH----HHHHHHHHHh
Confidence 5666666788877552 1 0 368999988764444 4555555543
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-24 Score=210.93 Aligned_cols=303 Identities=13% Similarity=0.078 Sum_probs=205.8
Q ss_pred CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 012368 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (465)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~ 195 (465)
+|++++++.+++++..+ .+.+...++++.++++++.+++++++||++|+..+++.+. . .++++|++
T Consensus 19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~--~--------~~gd~Vl~ 84 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG--I--------GEGDEVIT 84 (393)
T ss_dssp CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcC--C--------CCCCEEEe
Confidence 48889999998876422 2456688999999999998899999999999999999762 1 15889999
Q ss_pred EcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 012368 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA 275 (465)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l 275 (465)
.+++|++....+...+..... .+..++.. ..|+++|++++++ ++++|++++. .|...+ +++|.++
T Consensus 85 ~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~---~~d~~~l~~~l~~-~~~~v~~~~~---~G~~~~----~~~i~~l 149 (393)
T 1mdo_A 85 PSMTWVSTLNMIVLLGANPVM----VDVDRDTL---MVTPEHIEAAITP-QTKAIIPVHY---AGAPAD----LDAIYAL 149 (393)
T ss_dssp ESSSCHHHHHHHHHTTCEEEE----ECBCTTTC---CBCHHHHHHHCCT-TEEEECCBCG---GGCCCC----HHHHHHH
T ss_pred CCCccHhHHHHHHHCCCEEEE----EeccCCcC---CCCHHHHHHhcCC-CceEEEEeCC---CCCcCC----HHHHHHH
Confidence 999999876444332221111 11111100 1289999999975 5777777652 344443 8999999
Q ss_pred HHHhCCEEEEeccccC-CCCCCccccccccCCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCCCC-c------
Q 012368 276 CDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYGDH-G------ 342 (465)
Q Consensus 276 ~~~~g~llI~DEv~~g-~gr~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~~~-~------ 342 (465)
|++||+++|+||+|+. +...+.. .+. +|++++| |++++| ++|+++++ +++++.+.+... +
T Consensus 150 ~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~ 222 (393)
T 1mdo_A 150 GERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW 222 (393)
T ss_dssp HHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred HHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccch
Confidence 9999999999999983 3233321 222 6877665 888765 78999986 777766532111 0
Q ss_pred -----------------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce------eeeccc
Q 012368 343 -----------------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK------DVRGLG 399 (465)
Q Consensus 343 -----------------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------~~~~~g 399 (465)
..+..+++.++++.+.++.+ ++..++.+++.+++++.|.+ .+... ..++.+
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~ 296 (393)
T 1mdo_A 223 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMAD----LPFQPLSLPSWEHIHAW 296 (393)
T ss_dssp ---------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHT----SSCEECCCCSSCEECCC
T ss_pred hhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc----CCcccccCCCCCCCcee
Confidence 01334777777776666543 34455555555555555543 34110 122445
Q ss_pred eEEEEEec-----CChHHHHHHHHHCCceEeecCC------------------------CCEEEEecCCCCcHHHHHHHH
Q 012368 400 LIIGIEFD-----VSATPVVDACRDSGLLVLTAGK------------------------GNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 400 ~~~~i~~~-----~~~~~~~~~l~~~Gv~v~~~~~------------------------~~~lRi~~~~~~t~e~i~~~l 450 (465)
.++++.++ .+..++.+.|.++||.+.++.. ...+|++++..+|++|+++++
T Consensus 297 ~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~ 376 (393)
T 1mdo_A 297 HLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVI 376 (393)
T ss_dssp SCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHH
T ss_pred EEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHH
Confidence 57788774 3677899999999999876421 137999988889999999999
Q ss_pred HHHHHHHHHh
Q 012368 451 EILCKTLPVL 460 (465)
Q Consensus 451 ~~l~~~l~~~ 460 (465)
++|+++++..
T Consensus 377 ~~l~~~~~~~ 386 (393)
T 1mdo_A 377 TALHQIAGQG 386 (393)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhcC
Confidence 9999887654
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=206.83 Aligned_cols=308 Identities=14% Similarity=0.141 Sum_probs=201.6
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceE
Q 012368 114 HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~i 193 (465)
..+|++++++.+++.... ..+.+...++++.|+++++.+++++++||++|+..+++.++.+. .++++|
T Consensus 10 ~~~~~v~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~--------~~gd~V 77 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQ----LTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFS--------ADRNEI 77 (375)
T ss_dssp CCCHHHHHHHHHHHTSSC----CSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCC--------TTSCEE
T ss_pred CCCHHHHHHHHHHHHcCc----ccCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccC--------CCCCEE
Confidence 367999999999886532 12356678999999999997799999999999999999762101 157899
Q ss_pred EEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012368 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 194 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
++.+++||+....+...+....+. +..++. ..|+++|++++++ ++++|++... +|.+.+ +++|.
T Consensus 78 l~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~----~~d~~~l~~~i~~-~~~~v~~~~~---tG~~~~----l~~i~ 141 (375)
T 2fnu_A 78 ITTPISFVATANMLLESGYTPVFA----GIKNDG----NIDELALEKLINE-RTKAIVSVDY---AGKSVE----VESVQ 141 (375)
T ss_dssp EECSSSCTHHHHHHHHTTCEEEEC----CBCTTS----SBCGGGSGGGCCT-TEEEEEEECG---GGCCCC----HHHHH
T ss_pred EECCCccHhHHHHHHHCCCEEEEe----ccCCCC----CCCHHHHHhhcCc-CceEEEEeCC---cCCccC----HHHHH
Confidence 999999998876544433222111 111111 1278999999975 4565444333 565554 89999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCC--cccEEEec--ccCCCccceeeEEe-C-HHHHhhccCCC-------
Q 012368 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLA--KPLAGGLPIGAALV-T-EKVASAINYGD------- 340 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~--~pdi~t~s--K~lg~G~~iG~v~~-~-~~i~~~~~~~~------- 340 (465)
++|++||++||+||+|+.+ .... ....+. ..++.++| |.++.| +|++++ + +++++.+.+..
T Consensus 142 ~l~~~~~~~li~D~a~~~~-~~~~---~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T 2fnu_A 142 KLCKKHSLSFLSDSSHALG-SEYQ---NKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKK 215 (375)
T ss_dssp HHHHHHTCEEEEECTTCTT-CEET---TEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEES
T ss_pred HHHHHcCCEEEEECccccC-CeEC---CeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCccc
Confidence 9999999999999999743 2211 111222 24455788 999654 677776 3 66766554321
Q ss_pred ---------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee------ccceEEEEE
Q 012368 341 ---------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR------GLGLIIGIE 405 (465)
Q Consensus 341 ---------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~------~~g~~~~i~ 405 (465)
.+.++..+++.++++...++.+ ++..++.+++.+++.+.|+ +++.+.... +.+.++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
T 2fnu_A 216 DFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFK----DNPYFTPLHPLLKDKSSNHLYPIL 289 (375)
T ss_dssp SSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHT----TCSSEEESGGGCSSCCCCSCEEEE
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh----cCCCccccCCCCCCCcceEEEEEE
Confidence 1122345666666555444322 3445555555555555554 443222221 223455666
Q ss_pred ecC----ChHHHHHHHHHCCceEeecC-----------------C-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 406 FDV----SATPVVDACRDSGLLVLTAG-----------------K-------GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 406 ~~~----~~~~~~~~l~~~Gv~v~~~~-----------------~-------~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++. +..++.+.|.++||.+...- . .+.+|++++..+|++|+++++++|++++
T Consensus 290 ~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 369 (375)
T 2fnu_A 290 MHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTF 369 (375)
T ss_dssp ECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 642 56789999999999987210 0 1579999998899999999999999998
Q ss_pred HHhh
Q 012368 458 PVLD 461 (465)
Q Consensus 458 ~~~~ 461 (465)
++++
T Consensus 370 ~~~~ 373 (375)
T 2fnu_A 370 ESFK 373 (375)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 7653
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-25 Score=216.20 Aligned_cols=312 Identities=13% Similarity=0.076 Sum_probs=193.3
Q ss_pred CCC-CCHHHHHHHHHHHhhcc--cccCCCC-CHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012368 112 LGH-GDADWIKAVVDQANVLT--HVSNMYY-SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 112 lGh-~~p~v~~a~~~~~~~~~--~~~~~~~-~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
||+ +||.+.+++.++++... .....|. ++...+|+++|+++++.+..++++||++|+..+++++..
T Consensus 15 l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~---------- 84 (357)
T 3lws_A 15 QISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSD---------- 84 (357)
T ss_dssp ESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH----------
T ss_pred cccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhh----------
Confidence 444 67778888887776522 1112232 345789999999999977777889999999999987764
Q ss_pred CCCce-EEEEcCCcccCcccc---ccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEccc-CCCCCcc
Q 012368 188 EPATE-FVSFTNSFHGRTMGA---LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QGEGGIY 262 (465)
Q Consensus 188 ~~~~~-ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~-~~~~G~~ 262 (465)
++++ +|+.++.||...... ....+..... .+. ... ..|+++|+++.+ +++|++++. |+++|.
T Consensus 85 -~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~---v~~-~~~----~~d~~~l~~~~~---~~~v~~~~p~np~~G~- 151 (357)
T 3lws_A 85 -ETDNRTVAYHPLCHLEIHEQDGLKELHPIETIL---VGA-ADR----LMTLDEIKALPD---IACLLLELPQREIGGV- 151 (357)
T ss_dssp -HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEE---CSC-TTS----CCCHHHHHTCCS---CSEEEEESSBGGGTSB-
T ss_pred -cCCCcEEEecccceeeeeccchhhhccCcEEEE---ecC-CCC----CcCHHHHhcCcC---cceEEEEcccccCCce-
Confidence 2442 666777776544321 1111111100 011 111 128899998842 555655554 444454
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEecccc-----CCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhcc
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQC-----GLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN 337 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~-----g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~ 337 (465)
+++.+++++|.++|++||++||+||+|. .+++....+. . ....-+.++||++++... |++++++++++.+.
T Consensus 152 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~--~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~ 227 (357)
T 3lws_A 152 APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-G--LFDSIYISFYKGLGGIAG-AILAGPAAFCQTAR 227 (357)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-T--TSSEEEEESSSTTCCSSC-EEEEECHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-h--cCCEEEEeccccCCCCce-EEEEcCHHHHHHHH
Confidence 5689999999999999999999999875 1222211111 1 111124489999964322 89999999888775
Q ss_pred CC--CCc-CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee--eeccceEEEEEecCC---
Q 012368 338 YG--DHG-STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD--VRGLGLIIGIEFDVS--- 409 (465)
Q Consensus 338 ~~--~~~-~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g~~~~i~~~~~--- 409 (465)
.. ..+ ..+..++. ++++.++|+... +..++..++.+++.+.| .+++.+.. .+..+.++++.++..
T Consensus 228 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L----~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (357)
T 3lws_A 228 IWKRRYGGDLISLYPY-IVSADYYYELRK--DRMGQYYEQAKQLAEQF----NALPGVHTTPEVPVSNMFHLHFDGQAAD 300 (357)
T ss_dssp HHHHHTTCCCSCCHHH-HHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HTSTTEEEESSSCSSSEEEEEEESCHHH
T ss_pred HHHHHhcCCcccchHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HhCCCCeeccCCCcceEEEEEecCChHH
Confidence 31 122 23333443 445556676532 22333455555555554 34444433 245678888888533
Q ss_pred -hHHHHHHHHHCCceEeecC---C-CCEEEEecC---CCCcHHHHHHHHHHHHHHH
Q 012368 410 -ATPVVDACRDSGLLVLTAG---K-GNVVRLVPP---LIISEQELDQAVEILCKTL 457 (465)
Q Consensus 410 -~~~~~~~l~~~Gv~v~~~~---~-~~~lRi~~~---~~~t~e~i~~~l~~l~~~l 457 (465)
..++.+.|.++||++.++. . ..++|+++. ...+++++++++++|.+++
T Consensus 301 ~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 301 ISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 4678889999999998763 1 137888765 3468999999999998765
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=204.91 Aligned_cols=281 Identities=13% Similarity=0.081 Sum_probs=196.1
Q ss_pred HHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC
Q 012368 144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV 223 (465)
Q Consensus 144 ~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 223 (465)
++++++++.++.+..++++||++|+..+++.+. .++++|++.+++||+.......... ..
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~-----------~~g~~v~~~~~~~~~~~~~~~~~~~---------~~ 61 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFL-----------KAGDHLISDDCLYGCTHALFEHQLR---------KF 61 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTHHH---------HT
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-----------CCCCEEEEcCCCcchHHHHHHHHHH---------hc
Confidence 577888888886677888888999999998663 1578999999999987544321100 01
Q ss_pred CCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCCCCCCcccccc
Q 012368 224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AGALLVFDEVQCGLGRTGYLWAHE 302 (465)
Q Consensus 224 ~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~gr~g~~~~~~ 302 (465)
...+.+++..|++++++++++ ++++|++++.++++|.+.+ +++|.++|++ ||+++|+||+|+.+ ..... .
T Consensus 62 g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~~~~--~- 132 (331)
T 1pff_A 62 GVEVDFIDMAVPGNIEKHLKP-NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-ILTNP--L- 132 (331)
T ss_dssp TCEEEEECTTSTTHHHHTCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HHCCG--G-
T ss_pred CCEEEEeCCCCHHHHHHhhcC-CCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-ccCCh--h-
Confidence 123445566789999999974 5788888887777787765 9999999999 99999999999732 11111 1
Q ss_pred ccCCcccEEEecccCCC-ccc-eeeEEeCH-HHHhhccCCCCc-CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012368 303 HYGIFPDIMTLAKPLAG-GLP-IGAALVTE-KVASAINYGDHG-STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 303 ~~~~~pdi~t~sK~lg~-G~~-iG~v~~~~-~i~~~~~~~~~~-~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
.++....+.+++|++++ |.| +|++++++ ++++.+.+.... .+.+.+++++.++.++++.+ +...++..++.+.+
T Consensus 133 ~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 210 (331)
T 1pff_A 133 DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTL--DMRVKRAAENAQKV 210 (331)
T ss_dssp GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchH--HHHHHHHHHHHHHH
Confidence 23444444578999986 688 79999998 998888765555 55678888888877777643 22233444444444
Q ss_pred HHHHHHHH----------HcCCCce----eeeccceEEEEEecCChHHHHHHHHHCCceEeec-----------------
Q 012368 379 KETLKQKL----------ARNPHVK----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA----------------- 427 (465)
Q Consensus 379 ~~~l~~~~----------~~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~----------------- 427 (465)
.+.+++.. ..+|.+. ..++.|.++.+.+. +...+.+.|.++||++...
T Consensus 211 ~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~ 289 (331)
T 1pff_A 211 AEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTH 289 (331)
T ss_dssp HHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTS
T ss_pred HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcc
Confidence 44444320 1111111 11346788888875 5667888888999976432
Q ss_pred -----------CC-CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 428 -----------GK-GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 428 -----------~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+. .+.+|++++...++++++.+++.|+++
T Consensus 290 ~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 290 AGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp TTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 11 378999999999999999999988754
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=210.70 Aligned_cols=332 Identities=11% Similarity=0.069 Sum_probs=201.0
Q ss_pred EEEecccCcccccCCC--CCHHHHHHHHHHH-hh-cc--cccCCCCCHHHHHHHHHHHhhcC----CC--eEEecCCHHH
Q 012368 99 EYLDLSSGIAVNALGH--GDADWIKAVVDQA-NV-LT--HVSNMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTE 166 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh--~~p~v~~a~~~~~-~~-~~--~~~~~~~~~~~~~la~~l~~~~~----~~--~v~~~~sG~e 166 (465)
..|||..|.+..+-|. .++.|++|.. .+ +. .. +....+..+.++++++++.+..+ .+ .++.|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 3588887754333332 4677888876 43 22 11 21222333446666666654443 24 4699999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CC-CceEeeCCCHHHHHhhcCC
Q 012368 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MP-GVNFVEYGNIEATRKLIQP 244 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~le~~l~~ 244 (465)
|+.++++++..+. + |.|++.+|+|+++...+...+...... ++ .. +... |+++|++.++.
T Consensus 109 al~~~~~~l~~~~---------~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v----~~~~~~~~~~----d~~~l~~~l~~ 170 (405)
T 3k7y_A 109 AIFVLLEFLKMLN---------V-ETLYVTNPPYINHVNMIESRGFNLKYI----NFFDYNLIDI----NYDLFLNDLRN 170 (405)
T ss_dssp HHHHHHHHHHTTT---------C-CEEEEESSCCHHHHHHHHTTTCEEEEE----CCEETTTTEE----CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---------C-CEEEEeCCCCHhHHHHHHHcCCeEEEE----eccccccCCc----CHHHHHHHHHh
Confidence 9999998776321 5 899999999999876655444322211 11 01 1222 78999998862
Q ss_pred -CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---cccc----cccCCcccEEEecc
Q 012368 245 -GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAH----EHYGIFPDIMTLAK 315 (465)
Q Consensus 245 -~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~----~~~~~~pdi~t~sK 315 (465)
.+.++++++|. ++++| ..++++.+++|.++|++||+++|+||+|.+|...+. .... ...+...-+.+|||
T Consensus 171 ~~~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 249 (405)
T 3k7y_A 171 IPNGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSK 249 (405)
T ss_dssp SCSSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTT
T ss_pred CCCCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCc
Confidence 34567777664 33344 457999999999999999999999999999854321 1111 11112233458999
Q ss_pred cCC-CccceeeEEe---CHHHHhhccC----CCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHH---HHHHHHHHHHHH
Q 012368 316 PLA-GGLPIGAALV---TEKVASAINY----GDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASV---SKKGHYFKETLK 383 (465)
Q Consensus 316 ~lg-~G~~iG~v~~---~~~i~~~~~~----~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~---~~~~~~l~~~l~ 383 (465)
.++ .|+|+||+++ ++++++.+.. .......+.+.+++.++.++|+.-. .+.+.+++ ++..+..++.|.
T Consensus 250 ~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~ 329 (405)
T 3k7y_A 250 NMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFF 329 (405)
T ss_dssp TSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999854 5666554421 1111223456788888877776310 01122222 222333333444
Q ss_pred HHHH----cCCC---ceeeec-cceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 384 QKLA----RNPH---VKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 384 ~~~~----~~~~---~~~~~~-~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+.+. +++. +....+ .|.|+|+.++. ++++.|.++||++.|++ ||+++ ..++++|++++++|++
T Consensus 330 ~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~---~~~~~L~~~gV~v~p~~-----Ris~a-~~~~~~i~~~~~~i~~ 400 (405)
T 3k7y_A 330 NKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA---KIAEHLKTHHIYIINNG-----RINVS-GITKNNVDYIADKICL 400 (405)
T ss_dssp HHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG---GGTTTTTTTTEECCTTS-----EEEGG-GCCTTHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCCCCCccccCCceEEEecCCCH---HHHHHHHHCCEeecCCC-----eEEEe-ccCHHHHHHHHHHHHH
Confidence 4444 4331 233333 45566655432 44566778899999853 88765 3467889999999999
Q ss_pred HHHH
Q 012368 456 TLPV 459 (465)
Q Consensus 456 ~l~~ 459 (465)
+++.
T Consensus 401 ~~~~ 404 (405)
T 3k7y_A 401 SLSQ 404 (405)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8864
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-24 Score=209.11 Aligned_cols=312 Identities=16% Similarity=0.141 Sum_probs=203.9
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+++++|.+.+++.+++.+.......++.+...++++.++++++.+++++++||++|++.+++.+. . .++
T Consensus 6 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~--~--------~~g 75 (367)
T 3nyt_A 6 DLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALG--V--------GPG 75 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT--C--------CTT
T ss_pred cccccccccCHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhC--C--------CCc
Confidence 355655555444444433211111234566788999999999998899999999999999999763 1 158
Q ss_pred ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
++|++..++|++....+...+....+. +..++.. ..|+++|++++++ ++++|+ |+++. |...+ ++
T Consensus 76 d~Vi~~~~~~~~~~~~~~~~G~~~~~~----~~~~~~~---~~d~~~l~~~i~~-~~~~v~--~~~~~-G~~~~----~~ 140 (367)
T 3nyt_A 76 DEVITPGFTYVATAETVALLGAKPVYV----DIDPRTY---NLDPQLLEAAITP-RTKAII--PVSLY-GQCAD----FD 140 (367)
T ss_dssp CEEEEESSSCTHHHHHHHHTTCEEEEE----CBCTTTC---SBCGGGTGGGCCT-TEEEEC--CBCGG-GCCCC----HH
T ss_pred CEEEECCCccHHHHHHHHHcCCEEEEE----ecCCccC---CcCHHHHHHhcCc-CCcEEE--eeCCc-cChhh----HH
Confidence 899999999988776554443322211 1111100 0178999999965 677777 44433 44443 99
Q ss_pred HHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec----ccCCC-ccceeeEEe-CHHHHhhccCCC---
Q 012368 271 FLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALV-TEKVASAINYGD--- 340 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~-~~~i~~~~~~~~--- 340 (465)
+|.++|++||++||+||+|+ |....|. ..+...|++++| |.+++ |. .|+++. ++++++.+....
T Consensus 141 ~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g 214 (367)
T 3nyt_A 141 AINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHG 214 (367)
T ss_dssp HHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTT
T ss_pred HHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcC
Confidence 99999999999999999997 2222222 122223888776 99988 76 788887 467766554311
Q ss_pred ---------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-eeeccceEEEEEecCCh
Q 012368 341 ---------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-DVRGLGLIIGIEFDVSA 410 (465)
Q Consensus 341 ---------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~i~~~~~~ 410 (465)
.+.++..+++.++++.+.++.+ ++..++.+++.+++++.|.++....+... .......++.+.++ +.
T Consensus 215 ~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 291 (367)
T 3nyt_A 215 QDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD-NR 291 (367)
T ss_dssp EEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS-SH
T ss_pred CCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC-CH
Confidence 1346778899998888888754 45566777777777777766411111110 01111222334433 56
Q ss_pred HHHHHHHHHCCceEeecCC-----------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 411 TPVVDACRDSGLLVLTAGK-----------------------GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 411 ~~~~~~l~~~Gv~v~~~~~-----------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.++.+.|.++||.+.+... ...+|+.+....|++|++.+++.|++.
T Consensus 292 ~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 292 ESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 7899999999998764321 135899888889999999999998754
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=204.37 Aligned_cols=312 Identities=16% Similarity=0.134 Sum_probs=202.3
Q ss_pred ecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHh
Q 012368 102 DLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179 (465)
Q Consensus 102 D~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t 179 (465)
||..+.+ .++ .+|++.+++.++++... |+ .....++++.++++++.+++++++||++|+..+++.+.
T Consensus 20 ~l~~~~p--~~~-~p~~~~~a~~~~~~~~~-----y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~--- 88 (424)
T 2po3_A 20 PLLVGRP--NRI-DRARLYERLDRALDSQW-----LSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG--- 88 (424)
T ss_dssp CEETTCC--CCC-CHHHHHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT---
T ss_pred cccccCC--CCC-ChHHHHHHHHHHHhcCC-----cccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC---
Confidence 4444443 345 36789999998886531 22 36688999999999998899999999999999999764
Q ss_pred hhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEEEcccCCC
Q 012368 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGE 258 (465)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~ 258 (465)
++++|++.+++|++....+...+...... +..+ +.. -|+++|++++++ ++++|++.+ .
T Consensus 89 ---------~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v----~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~---~ 147 (424)
T 2po3_A 89 ---------LTGEVIMPSMTFAATPHALRWIGLTPVFA----DIDPDTGN----LDPDQVAAAVTP-RTSAVVGVH---L 147 (424)
T ss_dssp ---------CCSEEEEESSSCTHHHHHHHHTTCEEEEE----CBCTTTSS----BCHHHHGGGCCT-TEEEEEEEC---G
T ss_pred ---------CCCEEEECCCccHHHHHHHHHcCCEEEEE----ecCCCcCC----cCHHHHHHhhCc-CCcEEEEEC---C
Confidence 36899999999998875443332221111 1111 111 189999999975 567777643 3
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEE--ec--ccCCCccceeeEEeC-HHH
Q 012368 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LA--KPLAGGLPIGAALVT-EKV 332 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t--~s--K~lg~G~~iG~v~~~-~~i 332 (465)
+|...+ +++|.++|++||++||+||+|+ |+.+.|.. .+..+|+++ || |++++ +++|+++++ +++
T Consensus 148 tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l 217 (424)
T 2po3_A 148 WGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADL 217 (424)
T ss_dssp GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHH
T ss_pred CCCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHH
Confidence 444433 9999999999999999999998 66544432 122246654 55 77766 799999998 788
Q ss_pred HhhccCC----C--------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccc
Q 012368 333 ASAINYG----D--------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLG 399 (465)
Q Consensus 333 ~~~~~~~----~--------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g 399 (465)
++.+... . .+.++..+++.+++++..++.+ +.+.++.+ .+.+.+.+.+.+.+.+.... ..|
T Consensus 218 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~----~~~~~l~~~L~~~~g~~~~~~~~~ 291 (424)
T 2po3_A 218 AARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNR----RNHAAYREHLADLPGVLVADHDRH 291 (424)
T ss_dssp HHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHTCSCTTEEECCGGGG
T ss_pred HHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHhccCCCccccCCCCC
Confidence 7765421 1 0112233566666655544432 22333333 44444444444444333222 122
Q ss_pred -----eEEEEEec-----CChHHHHHHHHHCCceEeecCC-C-----------------------CEEEEecCCCCcHHH
Q 012368 400 -----LIIGIEFD-----VSATPVVDACRDSGLLVLTAGK-G-----------------------NVVRLVPPLIISEQE 445 (465)
Q Consensus 400 -----~~~~i~~~-----~~~~~~~~~l~~~Gv~v~~~~~-~-----------------------~~lRi~~~~~~t~e~ 445 (465)
.++.+.++ .+..++.+.|.++||.+.+... . ..+|+.+...++++|
T Consensus 292 ~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~ 371 (424)
T 2po3_A 292 GLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDD 371 (424)
T ss_dssp SCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHH
T ss_pred CccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHH
Confidence 34446553 2567899999999999876211 0 126776668999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 012368 446 LDQAVEILCKTLPVLD 461 (465)
Q Consensus 446 i~~~l~~l~~~l~~~~ 461 (465)
+++++++|++++++..
T Consensus 372 i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 372 IRRVADLLRLCATRGR 387 (424)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhH
Confidence 9999999999887653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=213.23 Aligned_cols=313 Identities=14% Similarity=0.063 Sum_probs=194.6
Q ss_pred cccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 012368 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (465)
Q Consensus 109 ~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~ 188 (465)
.+++| .||+|++|+.+.+.. ..+++.+...+++++++++++.+..++++||++|+..+++++...
T Consensus 22 ~~~~g-~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~---------- 86 (359)
T 3pj0_A 22 PRNVG-VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADR---------- 86 (359)
T ss_dssp CCBHH-HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHH----------
T ss_pred ccccC-CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhc----------
Confidence 33444 467777777663322 123456678899999999999777778899999999999987642
Q ss_pred CCceEEEEcCCcccCcccc--c-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCC
Q 012368 189 PATEFVSFTNSFHGRTMGA--L-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~ 265 (465)
+++.+|+.++.+|.+.... . ...+..... .+. ... .-|+++|+++ . .++++|++++.++++|..+++
T Consensus 87 g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~---v~~-~~~----~~d~~~l~~~-~-~~~~~v~~~~p~n~~~G~~~~ 156 (359)
T 3pj0_A 87 KENRRVAYHPLSHLEIHEQDGLKELQQITPLL---LGT-ANQ----LLTIDDIKSL-R-EPVSSVLIELPQREIGGQLPA 156 (359)
T ss_dssp HTCCEEEECTTCHHHHSSTTHHHHHHCCEEEE---CSC-TTS----CCCHHHHHTC-S-SCCSEEEEESSBGGGTSBCCC
T ss_pred CCCcEEEEeccceeeehhcchHHHhcCceEEe---cCC-cCC----CcCHHHHHhc-c-CCceEEEEEecccCCCcccCC
Confidence 1333677776666543321 1 111211111 111 111 1289999988 4 456777777654444334578
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCC--CCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccCC--
Q 012368 266 KEFLQFLRDACDDAGALLVFDEVQCGLG--RTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG-- 339 (465)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~g--r~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~-- 339 (465)
.+++++|.++|++||++||+||+|..+. ..+.. ...+....|++ ++||+++++.. |++++++++++.+...
T Consensus 157 ~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~ 233 (359)
T 3pj0_A 157 FEELEKISEYCHEQGISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKR 233 (359)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHH
Confidence 8999999999999999999999875321 11111 11111123555 78999987533 7888999998887531
Q ss_pred -CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee--eeccceEEEEEecCC----hHH
Q 012368 340 -DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD--VRGLGLIIGIEFDVS----ATP 412 (465)
Q Consensus 340 -~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g~~~~i~~~~~----~~~ 412 (465)
....++..++.+ +++.++++... +..++..++.+++.+.|+ +++.+.. .+..+.++++.++.. ...
T Consensus 234 ~~~~~~~~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
T 3pj0_A 234 RYGGDLISLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERFN----SCSGVKTVPEVPVSNMFHVYFENSADEIGAI 306 (359)
T ss_dssp HTTCCCSCCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHHH----TSTTEEEESSSCSSSEEEEEESSCHHHHHHH
T ss_pred HhCCCcchhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHHh----hCCCceeeccCCcceEEEEEecCccchhHHH
Confidence 122333444444 44445666432 334455566666655554 4443333 235567777777432 467
Q ss_pred HHHHHHHCCceEeecCC-----CCEEEEecCC---CCcHHHHHHHHHHHHHH
Q 012368 413 VVDACRDSGLLVLTAGK-----GNVVRLVPPL---IISEQELDQAVEILCKT 456 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~---~~t~e~i~~~l~~l~~~ 456 (465)
+.+.|.++||++.++.. ..++|+++.. ..+.+++++++++|.++
T Consensus 307 l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 307 LTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 88899999999987631 2467886643 36889999999998765
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=211.02 Aligned_cols=311 Identities=13% Similarity=0.087 Sum_probs=198.4
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCC--HHHHHHHHHHHhhcC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYS--IPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDS 186 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~------~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~ 186 (465)
.+|+|++++.+.+.. + +.+. ....++.+++++.++ .++|++++||++|+..+++.+.....
T Consensus 16 ~~~~v~~a~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~------ 84 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG--H---TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKA------ 84 (385)
T ss_dssp CCHHHHHTTSCCCCC--T---TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTC------
T ss_pred chHHHHHHHhccccc--c---CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCC------
Confidence 456777776554321 1 1111 124566677777665 37899999999999999987641001
Q ss_pred CCCCceEEEE-cCCcccCccccccccCCCCcCCCCCCC-CCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccC
Q 012368 187 KEPATEFVSF-TNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264 (465)
Q Consensus 187 ~~~~~~ii~~-~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~ 264 (465)
++++|+++ .+.||..........+..... .+. ..+.. .|+++|+++++++++++|++++.++++|.+.+
T Consensus 85 --~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~~----~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 155 (385)
T 2bkw_A 85 --PNKNVLVVSTGTFSDRFADCLRSYGAQVDV---VRPLKIGES----VPLELITEKLSQNSYGAVTVTHVDTSTAVLSD 155 (385)
T ss_dssp --SCCEEEEECSSHHHHHHHHHHHHTTCEEEE---ECCSSTTSC----CCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred --CCCeEEEEcCCcchHHHHHHHHHcCCceEE---EecCCCCCC----CCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC
Confidence 57888888 556766532222211111100 111 11110 28999999986435677777777777787765
Q ss_pred CHHHHHHHHHHHHHh--CCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHh-hccC-
Q 012368 265 TKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVAS-AINY- 338 (465)
Q Consensus 265 ~~~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~-~~~~- 338 (465)
+++|.++|++| |+++|+||+|+ +|.. .+....+ .+|+++ ++|+++++.++|++++++++++ .+.+
T Consensus 156 ----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~ 226 (385)
T 2bkw_A 156 ----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDS 226 (385)
T ss_dssp ----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHH
T ss_pred ----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHHhhc
Confidence 88999999999 99999999997 3322 1122222 356664 5799886556699999988776 4420
Q ss_pred ---------------------CCC--cC-CCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHH-HHHHHcCC
Q 012368 339 ---------------------GDH--GS-TFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETL-KQKLARNP 390 (465)
Q Consensus 339 ---------------------~~~--~~-t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l-~~~~~~~~ 390 (465)
... .. .++.++.+++++.++|+.+.+ ++..++++++.+++.+.| ++ .+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g 302 (385)
T 2bkw_A 227 KNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG----LQ 302 (385)
T ss_dssp HHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT----TC
T ss_pred cCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh----cC
Confidence 000 11 135677888888888886543 234555666666666655 43 22
Q ss_pred Cceeee------ccceEEEEEecCChHHHHHHHHHCCceEeecCC----CCEEEEe-cC---CCCcHHHHHHHHHHHHHH
Q 012368 391 HVKDVR------GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----GNVVRLV-PP---LIISEQELDQAVEILCKT 456 (465)
Q Consensus 391 ~~~~~~------~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~lRi~-~~---~~~t~e~i~~~l~~l~~~ 456 (465)
. .... ..+.++++.++. ..++.+.|.++||.+.++.. .+++|++ ++ +.+|++|+++++++|+++
T Consensus 303 ~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~ 380 (385)
T 2bkw_A 303 L-TSVSRYPSNMSAHGLTAVYVAD-PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLA 380 (385)
T ss_dssp C-EESSCSSSTTBCSSCEEEECSC-HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred c-eecccCcccccCCceEEEecCC-HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHH
Confidence 2 1111 247788888743 77899999999999987532 3689998 54 357999999999999988
Q ss_pred HHHh
Q 012368 457 LPVL 460 (465)
Q Consensus 457 l~~~ 460 (465)
++++
T Consensus 381 ~~~~ 384 (385)
T 2bkw_A 381 LQRK 384 (385)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 7543
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=208.79 Aligned_cols=309 Identities=11% Similarity=0.043 Sum_probs=197.2
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012368 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+++++|.+.+.+.+++.+.......++.+...++++.++++++.+++++++||++|+..+++.+. . .++
T Consensus 7 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~--~--------~~g 76 (373)
T 3frk_A 7 SFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYD--I--------GFG 76 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTT--C--------CTT
T ss_pred CCCcccCCCCHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C--------CCc
Confidence 456665555544444433211111234566788999999999998899999999999999998762 1 158
Q ss_pred ceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 012368 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
++|++.+++|++....+...+....+. +.. ..... |+++|++++++ ++++|+ |+++ .|...+ +
T Consensus 77 d~Vi~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~----d~~~l~~~l~~-~~~~v~--~~n~-~G~~~~----l 140 (373)
T 3frk_A 77 DEVIVPSNTFIATALAVSYTGAKPIFV----EPDIRTYNI----DPSLIESAITE-KTKAII--AVHL-YGQPAD----M 140 (373)
T ss_dssp CEEEEETTSCTHHHHHHHHHSCEEEEE----CEETTTTEE----CGGGTGGGCCT-TEEEEE--EECC-TTCCCC----H
T ss_pred CEEEECCCCcHHHHHHHHHcCCEEEEE----eccccccCc----CHHHHHHhcCC-CCeEEE--EECC-CcCccc----H
Confidence 899999999998765543333221111 111 01111 88999999975 567776 4443 455544 8
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCC-ccceeeEEeC-HHHHhhccCC----
Q 012368 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALVT-EKVASAINYG---- 339 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~~-~~i~~~~~~~---- 339 (465)
++|.++|++||++||+||+|+.. . .+.....+..+|++++| |++++ |. .|+++++ +++.+.+...
T Consensus 141 ~~i~~l~~~~~~~li~D~a~~~g-~---~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g 215 (373)
T 3frk_A 141 DEIKRIAKKYNLKLIEDAAQAHG-S---LYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYG 215 (373)
T ss_dssp HHHHHHHHHHTCEEEEECTTCTT-C---EETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHcCCEEEEECCcccC-C---EECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcC
Confidence 99999999999999999999732 1 12223344446888777 99987 64 7888876 4565544321
Q ss_pred --------CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee--e--ccceE--EEEE
Q 012368 340 --------DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV--R--GLGLI--IGIE 405 (465)
Q Consensus 340 --------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~--~~g~~--~~i~ 405 (465)
..+.++..+++.++++...++.+ +++.++.+++.+++++.|. +.+ +... . ....+ +.+.
T Consensus 216 ~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~----~~~-~~~~~~~~~~~~~~~~~~~~ 288 (373)
T 3frk_A 216 SEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGIN----NPN-VIIPVEADYAKHVWYTFVIR 288 (373)
T ss_dssp CSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCC----CTT-EECCCCCTTEECCCSSEEEE
T ss_pred cccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc----cCc-eEeccCCCCCceeeEEEEEE
Confidence 11234456777777766655532 3445555555555555543 333 1111 0 11122 2233
Q ss_pred ecCChHHHHHHHHHCCceEeecCC--------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 406 FDVSATPVVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 406 ~~~~~~~~~~~l~~~Gv~v~~~~~--------------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
. .+..++.+.|.++||.+.+... ...+|++++..+|++|++++++.|+++..
T Consensus 289 ~-~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 289 S-EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp E-SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred e-CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 2 3677899999999999874320 05799999999999999999999987654
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=213.87 Aligned_cols=320 Identities=16% Similarity=0.131 Sum_probs=197.8
Q ss_pred CCHHHHHHHHHHHhh-cccccC----CCCCHH---HHHHH-HHHHhhcCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQANV-LTHVSN----MYYSIP---QIELA-KRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~~----~~~~~~---~~~la-~~l~~~~~~~~v~~-~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.+|+|++|+.+++.. ...++. ...... .++++ +++++.++.+.+.+ ++||++|+..+++.++.
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~------- 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMS------- 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcC-------
Confidence 489999999988753 221111 112222 25566 88999889777777 99999999999987652
Q ss_pred CCCCCCceEEEEcCCcccCccccc--cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE-cccCCCCCc
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV-EPIQGEGGI 261 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~-ep~~~~~G~ 261 (465)
++++|++.+++|+++..... ...+.. +.....+..++.. ..|+++|+++++..++++|++ .|++++++
T Consensus 130 ----~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~- 200 (447)
T 3h7f_A 130 ----PGERLLGLDLANGGHLTHGMRLNFSGKL-YENGFYGVDPATH---LIDMDAVRATALEFRPKVIIAGWSAYPRVL- 200 (447)
T ss_dssp ----TTCEEEEECGGGTCCGGGTCTTSHHHHS-SEEEEECCCTTTC---SCCHHHHHHHHHHHCCSEEEEECSSCCSCC-
T ss_pred ----CCCEEEecCcccccccchhhhhhhcCCe-eEEEEcCcCcccC---CcCHHHHHHHHHhcCCeEEEEcCCCCCCcc-
Confidence 68999999999987432211 111110 0000011111110 138999999985323445555 67766543
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccc-cCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccC
Q 012368 262 YSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY 338 (465)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~ 338 (465)
++++|+++|++||++||+||+| .|+.+.|..... .. ..|++ ++||+++ |+++|++++++++++.+..
T Consensus 201 ------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-~~--~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~ 270 (447)
T 3h7f_A 201 ------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-VP--HADVVSTTVHKTLG-GGRSGLIVGKQQYAKAINS 270 (447)
T ss_dssp ------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TT--TCSEEEEESSGGGC-CCSCEEEEECGGGHHHHHH
T ss_pred ------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-CC--CCcEEEecCCcCCC-CCCeEEEEECHHHHHHHhh
Confidence 3899999999999999999996 444333321111 01 13555 6789985 6888999999988877654
Q ss_pred CCCcCCCCC-hHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee--ccceEEEEEec---CC
Q 012368 339 GDHGSTFAG-SPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR--GLGLIIGIEFD---VS 409 (465)
Q Consensus 339 ~~~~~t~~~-~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~i~~~---~~ 409 (465)
.....++++ +...++++.+++....+ +++.+++.++.+++.+.|.+.+...+.+..+. ..+.++++++. ..
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
T 3h7f_A 271 AVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLD 350 (447)
T ss_dssp HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCC
T ss_pred hcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCC
Confidence 323333333 33345555566665433 34666777777777777765421112222222 24556777763 24
Q ss_pred hHHHHHHHHHCCceEe----ec--C---CCCEEEEecCCC----CcHHHHHHHHHHHHHHHHHh
Q 012368 410 ATPVVDACRDSGLLVL----TA--G---KGNVVRLVPPLI----ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~----~~--~---~~~~lRi~~~~~----~t~e~i~~~l~~l~~~l~~~ 460 (465)
...+.+.|.++||++. +. . .++.+|+.++.. ++++|+++++++|++++.+.
T Consensus 351 ~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 351 GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 4556666667799987 33 1 136799987654 67999999999999998754
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=208.35 Aligned_cols=319 Identities=10% Similarity=0.034 Sum_probs=202.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC---CeEEecCCHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~v~~~~sG~eA~~~al~~a 175 (465)
.++|+..+.+.. ..+|++++++. .. ..+.....++++.+++.++. +++++++||++|+..+++.+
T Consensus 29 ~v~~~~~~~~~~---~~~~~v~~a~~----~~-----~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~ 96 (374)
T 2aeu_A 29 ALYDLSGLSGGF---LIDEKDKALLN----TY-----IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL 96 (374)
T ss_dssp GCEECSSCCCCC---CCCHHHHHHHT----ST-----THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred ceeeecccCCCC---CCCHHHHHHHH----Hh-----cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC
Confidence 455766543221 25677877775 11 11123356777777777786 89999999999999999855
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE-EEEcc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA-VFVEP 254 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~-vi~ep 254 (465)
. +++|++.+|+||++........ .....+..+ .|+++|+++ ++ ++++ |++++
T Consensus 97 ----~---------gd~Vl~~~~~y~~~~~~~~~~~----------~~g~~~~~v--~d~~~l~~~-~~-~~~~~v~~~~ 149 (374)
T 2aeu_A 97 ----K---------PKKVIHYLPELPGHPSIERSCK----------IVNAKYFES--DKVGEILNK-ID-KDTLVIITGS 149 (374)
T ss_dssp ----C---------CSEEEEECSSSSCCTHHHHHHH----------HTTCEEEEE--SCHHHHHTT-CC-TTEEEEEECB
T ss_pred ----C---------CCEEEEecCCCCccHHHHHHHH----------HcCcEEEEe--CCHHHHHhc-CC-CccEEEEEcc
Confidence 1 7899999999998653211000 001122333 589999998 54 5677 77776
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHH
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKV 332 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i 332 (465)
.++.+|. +...+++|.++|++||++||+||+|..+ ..+...........+|++ ++||+++| +++|++++++++
T Consensus 150 p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g-~~~G~~~~~~~~ 224 (374)
T 2aeu_A 150 TMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG-PRGGLLAGKKEL 224 (374)
T ss_dssp CTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS-CSCEEEEEEHHH
T ss_pred CCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC-cceEEEEECHHH
Confidence 6666553 4566999999999999999999988643 111100000111235666 58899864 799999999999
Q ss_pred HhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH----HHHHHHHHHcC---CCce-eeeccceEEEE
Q 012368 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF----KETLKQKLARN---PHVK-DVRGLGLIIGI 404 (465)
Q Consensus 333 ~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~---~~~~-~~~~~g~~~~i 404 (465)
++.+.........+.+++.++++.++|+.+. .+..++..++.+.+ ++.|.+.+... +.+. ..++.|.+++.
T Consensus 225 ~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~ 303 (374)
T 2aeu_A 225 VDKIYIEGTKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKR 303 (374)
T ss_dssp HHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEE
T ss_pred HHHHHHhhccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEe
Confidence 8877643222233568899999999998763 22344455555555 56666654443 1112 23455666554
Q ss_pred EecCCh------HHHHHHHH-HCCceEeecCC----CCEEEEecCC-CCcHHHHHHHHHHHHHHHHHhhh
Q 012368 405 EFDVSA------TPVVDACR-DSGLLVLTAGK----GNVVRLVPPL-IISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 405 ~~~~~~------~~~~~~l~-~~Gv~v~~~~~----~~~lRi~~~~-~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.-.... .+++..++ ++||.+.++.. ++++||+++. ..++.+++++++.|+++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 304 VYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred ecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 311111 12554554 68999987531 3579998763 23344588999999998887653
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=206.99 Aligned_cols=315 Identities=16% Similarity=0.156 Sum_probs=207.7
Q ss_pred CCCCCHHHHHHHHHHHhhcccccCCCCC--------HHHHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHHHHhhhc
Q 012368 112 LGHGDADWIKAVVDQANVLTHVSNMYYS--------IPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHS 182 (465)
Q Consensus 112 lGh~~p~v~~a~~~~~~~~~~~~~~~~~--------~~~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~~~t~~~ 182 (465)
.+|.+|++.+++.++.. .+ +.+.. +...++++++++.++.+ .+++++||++|+..++++++.+....
T Consensus 75 ~~~~~p~v~~~~~~~~~---~~-~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~ 150 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFA---DL-HPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDR 150 (474)
T ss_dssp CCCCCCHHHHHHHHTTS---SC-CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHH---hc-CCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhc
Confidence 45778999888877622 11 22222 33778899999988855 45688999999999998887653211
Q ss_pred CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCC
Q 012368 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQG 257 (465)
Q Consensus 183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~ 257 (465)
+. ..++++||+.++.| +....+....+. .+..+|.+ |+++|++++++ ++++|+++..+
T Consensus 151 Gd--~~~r~~Vlv~~~~h-~~~~~~~~~~G~------------~vv~v~~~~~~~~d~~~L~~~i~~-~t~~v~~~~pn- 213 (474)
T 1wyu_B 151 GE--GRTRRVVLVPDSAH-GSNPATASMAGY------------QVREIPSGPEGEVDLEALKRELGP-HVAALMLTNPN- 213 (474)
T ss_dssp TC--TTTCCEEEEETTSC-THHHHHHHHTTC------------EEEEECBCTTSSBCHHHHHHHCST-TEEEEEECSSC-
T ss_pred CC--ccCCCEEEEeCCcC-hhhHHHHHHCCC------------EEEEecCCCCCCcCHHHHHHhhCC-CceEEEEECCC-
Confidence 10 00244888888665 544444333221 12223322 89999999975 57777777644
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCC-----ccceeeEEeCH
Q 012368 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG-----GLPIGAALVTE 330 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~-----G~~iG~v~~~~ 330 (465)
+.|.+. +.+++|.++|++||+++|+||+|..+ ..|.. ....+ .+|++++ +|++++ |+++|++++++
T Consensus 214 ~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~~-~~~~~--g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~ 286 (474)
T 1wyu_B 214 TLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA 286 (474)
T ss_dssp TTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHH--TCSEEECCTTTTTCCCCTTSCCCCCCEEECG
T ss_pred CCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccCC-CcccC--CCcEEEEeCccccccCCCCCCCCeEEEEEcH
Confidence 456552 23999999999999999999999643 23321 11222 3788876 798863 36999999999
Q ss_pred HHHhhccCC-------------------CCcCCCCChHHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHHc
Q 012368 331 KVASAINYG-------------------DHGSTFAGSPLVCNAAIAVLDKISNPAF---LASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 331 ~i~~~~~~~-------------------~~~~t~~~~~~~~~aa~a~L~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~ 388 (465)
++++.+... ....++++|+++++++.++++.+..+.+ .+++.++.+++.+.|++. .
T Consensus 287 ~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g 364 (474)
T 1wyu_B 287 HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--G 364 (474)
T ss_dssp GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C
Confidence 988776510 0112345788889998888875533333 566677777777777663 2
Q ss_pred CCCceeeeccceE--EEEEe--cCChHHHHHHHHHCCceEeecC----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 389 NPHVKDVRGLGLI--IGIEF--DVSATPVVDACRDSGLLVLTAG----KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 389 ~~~~~~~~~~g~~--~~i~~--~~~~~~~~~~l~~~Gv~v~~~~----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+... .+.+.+ +++.+ +.+..++.+.|.++||.+.... .++++||+++..+|++++++++++|++++++
T Consensus 365 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 365 YRVP---YDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CBCS---SCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred cEec---CCCCcceEEEEEcCCCCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 2221 111222 44444 3467789999999999863221 1368999998888999999999999988754
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=209.03 Aligned_cols=287 Identities=18% Similarity=0.138 Sum_probs=191.7
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..++++...+|+++|+++.+.+.+++++||++|+..+++.+. .++++||+.+++||+.........
T Consensus 73 ~~y~r~~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~~ 141 (414)
T 3ndn_A 73 YVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALL-----------GAGDRLVAARSLFGSCFVVCSEIL 141 (414)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTTCEEEEESCCCHHHHHHHHTHH
T ss_pred cCcCCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEcCCccchHHHHHHHHH
Confidence 445667888899999999999998899999999999999988654 268999999999998653321100
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
......+.++|.+|+++|++++++ ++++|++++.++++|.+.+ +++|+++|++||++||+||+|+.
T Consensus 142 ---------~~~g~~~~~v~~~d~~~l~~ai~~-~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~ 207 (414)
T 3ndn_A 142 ---------PRWGVQTVFVDGDDLSQWERALSV-PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFAT 207 (414)
T ss_dssp ---------HHTTCEEEEECTTCHHHHHHHTSS-CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred ---------HHcCcEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCcc
Confidence 012244567788899999999975 5678888887777777755 99999999999999999999862
Q ss_pred CCCCCccccccccCCcccEEEecccCCC-c-cceeeEEeCHHHHh-hccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-G-LPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t~sK~lg~-G-~~iG~v~~~~~i~~-~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
|.......++....+.++||++++ | +++|+++++++.+. .+...........+++.++++...++.+ +...
T Consensus 208 ----~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l--~~r~ 281 (414)
T 3ndn_A 208 ----PLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETL--AIRV 281 (414)
T ss_dssp ----HHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGH--HHHH
T ss_pred ----cccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH--HHHH
Confidence 211112234555555678899987 7 89999999988765 4432111111233666666555555432 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCC-------hHHHHHHHHHCCce
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVS-------ATPVVDACRDSGLL 423 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~-------~~~~~~~l~~~Gv~ 423 (465)
++..++.+++.+.|+ ++|.+.. .+|.|.+++++++.. ..+|.+.|...++.
T Consensus 282 ~~~~~~a~~l~~~L~----~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 357 (414)
T 3ndn_A 282 QHSNASAQRIAEFLN----GHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDIS 357 (414)
T ss_dssp HHHHHHHHHHHHHHH----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEEC
T ss_pred HHHHHHHHHHHHHHh----cCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEc
Confidence 445555555555443 4443322 245789999999532 34456665544444
Q ss_pred EeecC--------------------------CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 424 VLTAG--------------------------KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 424 v~~~~--------------------------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+..++ .++.+|+++.+. +.+++++.|+++|
T Consensus 358 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e----~~~dli~dl~~al 413 (414)
T 3ndn_A 358 NNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLE----DTDDLIADIDRAL 413 (414)
T ss_dssp SCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSS----CHHHHHHHHHHHH
T ss_pred CCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHhh
Confidence 33221 146899987754 4555666666654
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=208.33 Aligned_cols=315 Identities=16% Similarity=0.131 Sum_probs=186.1
Q ss_pred CCHHHHHHHHHHHhh-ccccc---CCCC----CHHHHHHH-HHHHhhcCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQANV-LTHVS---NMYY----SIPQIELA-KRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~---~~~~----~~~~~~la-~~l~~~~~~~~v-~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.||+|++|+.+++.. ...+. ..+. .+...+++ +++++.++.+.+ ++++||++|+..+++.+.
T Consensus 44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~-------- 115 (425)
T 3ecd_A 44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALA-------- 115 (425)
T ss_dssp CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHcc--------
Confidence 489999999998843 21110 0111 11345555 677788886666 459999999999998764
Q ss_pred CCCCCCceEEEEcCCcccCc-ccccc-ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc-ccCCCCCc
Q 012368 185 DSKEPATEFVSFTNSFHGRT-MGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE-PIQGEGGI 261 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e-p~~~~~G~ 261 (465)
.++++|++.+++|++.. ..... ..+.. +.....+..++.. ..|+++|+++++..++++|+++ |++++
T Consensus 116 ---~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~v~~~~~~~~~--- 185 (425)
T 3ecd_A 116 ---KPGDTVLGMSLDAGGHLTHGAKPALSGKW-FNALQYGVSRDTM---LIDYDQVEALAQQHKPSLIIAGFSAYPR--- 185 (425)
T ss_dssp ---CTTCEEEEECC-------------------CEEEEECCCTTTS---SCCHHHHHHHHHHHCCSEEEEECSCCCS---
T ss_pred ---CCCCEEEEcccccccceecchhhhhcccc-eeeeecCCCcccC---ccCHHHHHHHHhhcCCcEEEEccccCCC---
Confidence 26899999999998832 22211 11110 0000001111100 1289999999963345677766 55532
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccc-cCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeC-HHHHhhcc
Q 012368 262 YSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVT-EKVASAIN 337 (465)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~-~~i~~~~~ 337 (465)
..+ +++|+++|++||++||+||+| .|+.+.+..... .. .+|++ ++||++ +|+++|+++++ +++.+.+.
T Consensus 186 ~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l-~g~~~g~~~~~~~~~~~~~~ 257 (425)
T 3ecd_A 186 KLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTL-RGPRGGFVLTNDEEIAKKIN 257 (425)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGG-CCCSCEEEEESCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCccc-CCCCcEEEEeCCHHHHHHHH
Confidence 222 899999999999999999995 444333332111 11 14565 567999 45689999998 56766664
Q ss_pred CCCCc-CCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee--eccceEEEEEec---C
Q 012368 338 YGDHG-STFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV--RGLGLIIGIEFD---V 408 (465)
Q Consensus 338 ~~~~~-~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~g~~~~i~~~---~ 408 (465)
..... .+.+.++..++++.+++..... +++.++++++.+++++.|.+. +. ..+ .+.+.++++.+. .
T Consensus 258 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~~~~~~~~~~~ 332 (425)
T 3ecd_A 258 SAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG----GV-DLVTGGTDNHLLLVDLRPKGL 332 (425)
T ss_dssp HHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TC-EEGGGSCSSSEEEEECGGGTC
T ss_pred hhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----CC-eeccCCCCceEEEEEeCCCCC
Confidence 32222 2223344444444444443322 356666777777777776652 22 122 135677888773 2
Q ss_pred ChHHHHHHHHHCCceEe----ecC-----CCCEEEEecCCC----CcHHHHHHHHHHHHHHHHHh
Q 012368 409 SATPVVDACRDSGLLVL----TAG-----KGNVVRLVPPLI----ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~----~~~-----~~~~lRi~~~~~----~t~e~i~~~l~~l~~~l~~~ 460 (465)
....+.+.|.++||.+. |+. ..+.+|++++.. ++++++++++++|++++++.
T Consensus 333 ~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 333 KGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 56678888889999998 321 124799986544 45999999999999998875
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-23 Score=202.93 Aligned_cols=306 Identities=16% Similarity=0.140 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
|++++++.++++.... ..++.+...+++++++++++.+..++++||++|+..+++.+. . .++++|++.
T Consensus 17 ~~~~~a~~~~l~~~~~--~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~--~--------~~gd~Vi~~ 84 (388)
T 1b9h_A 17 DAERNGLVRALEQGQW--WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG--V--------GPGTEVIVP 84 (388)
T ss_dssp HHHHHHHHHHHHTSCC--BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCe--eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEEC
Confidence 8999999999876322 234455688999999999986666667778999999998762 1 157899999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+++||+....+...+....+. +..++.. ..|+++|++++++ ++++|+ |+|++ |.+.+ +++|.++|
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~v----~~~~~~~---~~d~~~l~~~i~~-~~~~v~--~~n~t-G~~~~----l~~i~~la 149 (388)
T 1b9h_A 85 AFTFISSSQAAQRLGAVTVPV----DVDAATY---NLDPEAVAAAVTP-RTKVIM--PVHMA-GLMAD----MDALAKIS 149 (388)
T ss_dssp SSSCTHHHHHHHHTTCEEEEE----CBCTTTC---CBCHHHHHHHCCT-TEEEEC--CBCGG-GCCCC----HHHHHHHH
T ss_pred CCccHHHHHHHHHcCCEEEEE----ecCCCcC---CCCHHHHHHhcCc-CceEEE--EeCCc-cCcCC----HHHHHHHH
Confidence 999998876543333221111 1111100 0289999999975 566666 76665 44444 89999999
Q ss_pred HHhCCEEEEeccccC-CCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHH-H--HhhccC---CC-------
Q 012368 277 DDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK-V--ASAINY---GD------- 340 (465)
Q Consensus 277 ~~~g~llI~DEv~~g-~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~-i--~~~~~~---~~------- 340 (465)
++||++||+||+|+. ....|.. ...++ ..++.+|| |++++ .++|+++++++ + ++.+.. ..
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRR 225 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSS
T ss_pred HHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCcc
Confidence 999999999999973 3222221 22222 24556677 66655 48899998875 5 454421 00
Q ss_pred -----CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-------eccceEEEEEecC
Q 012368 341 -----HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-------RGLGLIIGIEFDV 408 (465)
Q Consensus 341 -----~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------~~~g~~~~i~~~~ 408 (465)
.+.++..+++.++++.+.++.+ ++..++.+++.+++.+.|+ +++.+... +..+.++++.++.
T Consensus 226 ~~~~~~g~~~~~~~~~~a~~~~~~~~l--~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
T 1b9h_A 226 YFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLG----AIDGVVPQGGDVRADRNSHYMAMFRIPG 299 (388)
T ss_dssp CCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHH----TSTTCEECCCCTTCCBCCCSEEEEECTT
T ss_pred ceeecccccCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc----cCCCccccCCCcCCCccceEEEEEEeCC
Confidence 0122335666666655555433 2344555555555555554 34322222 2336788888853
Q ss_pred ----ChHHHHHHHHHCCceEeecCCC--------------------------------CEEEEecCCCC-cHHHHHHHHH
Q 012368 409 ----SATPVVDACRDSGLLVLTAGKG--------------------------------NVVRLVPPLII-SEQELDQAVE 451 (465)
Q Consensus 409 ----~~~~~~~~l~~~Gv~v~~~~~~--------------------------------~~lRi~~~~~~-t~e~i~~~l~ 451 (465)
+..++.+.|.++||.+.++... +.+||.+...+ |++|++++++
T Consensus 300 ~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~ 379 (388)
T 1b9h_A 300 LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAE 379 (388)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHH
Confidence 3567999999999999754210 25899888888 9999999999
Q ss_pred HHHHHHHH
Q 012368 452 ILCKTLPV 459 (465)
Q Consensus 452 ~l~~~l~~ 459 (465)
.|++++++
T Consensus 380 ~l~~~~~~ 387 (388)
T 1b9h_A 380 IIADAVAR 387 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=208.80 Aligned_cols=304 Identities=14% Similarity=0.137 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
|++.+++.+.+....+ . .+.+...++++.++++++.+.+++++||++|+..+++.+. . .++++|++.
T Consensus 36 ~~~~~a~~~~~~~~~~--~-~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~--~--------~~gd~vl~~ 102 (391)
T 3dr4_A 36 GNERDYVLECMDTTWI--S-SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMG--I--------GPGDEVIVP 102 (391)
T ss_dssp SSHHHHHHHHHHHTCC--S-SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHT--C--------CTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCc--c-CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEEC
Confidence 5688888887765321 1 2466788999999999998899999999999999999772 1 158899999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+++|++....+...+....+. +..+... .-|+++|++++++ ++++|++ ++ ..|...+ +++|.++|
T Consensus 103 ~~~~~~~~~~~~~~g~~~~~~----~~~~~~~---~~d~~~l~~~~~~-~~~~v~~--~n-~tG~~~~----~~~i~~l~ 167 (391)
T 3dr4_A 103 SLTYIASANSVTYCGATPVLV----DNDPRTF---NLDAAKLEALITP-RTKAIMP--VH-LYGQICD----MDPILEVA 167 (391)
T ss_dssp SSSCTHHHHHHHHTTCEEEEE----CBCTTTC---SBCGGGSGGGCCT-TEEEECC--BC-GGGCCCC----HHHHHHHH
T ss_pred CCchHHHHHHHHHCCCEEEEE----ecCcccc---CcCHHHHHHhcCC-CceEEEE--EC-CCCChhh----HHHHHHHH
Confidence 999998876554433222111 1110000 0178999999975 5677663 33 3455444 89999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCC-C----------
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG-D---------- 340 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~-~---------- 340 (465)
++||++||+||+|+.. .. +.....+..+|+.++| |++++| +.|+++.+ +++++.+... .
T Consensus 168 ~~~~~~li~D~a~~~g-~~---~~~~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 242 (391)
T 3dr4_A 168 RRHNLLVIEDAAEAVG-AT---YRGKKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDPNRRYW 242 (391)
T ss_dssp HHTTCEEEEECTTCTT-CE---ETTEETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCTTSTTC
T ss_pred HHcCCEEEEECccccc-ce---ECCeeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCCCCccc
Confidence 9999999999999731 11 1111223335777666 999764 57888776 4565544321 0
Q ss_pred ---CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee-----eeccceEEEEEec----C
Q 012368 341 ---HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD-----VRGLGLIIGIEFD----V 408 (465)
Q Consensus 341 ---~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~g~~~~i~~~----~ 408 (465)
.+..+..+++.++++...++.+ +++.++.+++.+++++.|.++ ....... ....+.++++.++ .
T Consensus 243 ~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 318 (391)
T 3dr4_A 243 FPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYTVRLGEGLST 318 (391)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEEEEECSSCSS
T ss_pred ccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEEEEECCccch
Confidence 1122455666666665555432 456667777777777777654 2221111 1122334566653 2
Q ss_pred ChHHHHHHHHHCCceEeecCC-----------------------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 409 SATPVVDACRDSGLLVLTAGK-----------------------GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~-----------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+..++.+.|.++||.+.++.. ...+|+.++..+|++||++++++|++++
T Consensus 319 ~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 319 TRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 477899999999999986530 2468999999999999999999998653
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=219.84 Aligned_cols=311 Identities=16% Similarity=0.178 Sum_probs=201.6
Q ss_pred CCCCCHHHHHHHHHH----HhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012368 112 LGHGDADWIKAVVDQ----ANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 112 lGh~~p~v~~a~~~~----~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
.|-.+|.|.++.... .+...+.+..+..+...+++++++++++.+++++++||++|+..+++++ +
T Consensus 101 ~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~~~----~------- 169 (464)
T 1ibj_A 101 FDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLI----K------- 169 (464)
T ss_dssp TCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTS----C-------
T ss_pred CCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHh----C-------
Confidence 344556676665532 1222222334566778999999999999889999999999998777522 1
Q ss_pred CCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHH
Q 012368 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE 267 (465)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~ 267 (465)
++++||+.++.||++........ ......+..+|.+|+++|++++++ ++++|++++.++.+|.+.+
T Consensus 170 -~Gd~Vi~~~~~y~~~~~~~~~~~---------~~~G~~v~~v~~~d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~--- 235 (464)
T 1ibj_A 170 -NGEEIVAGDDVYGGSDRLLSQVV---------PRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQISD--- 235 (464)
T ss_dssp -TTCEEEEESSCCHHHHHHHHHTS---------GGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCC---
T ss_pred -CCCEEEEECCCchhHHHHHHHHH---------HHcCCEEEEeCCCCHHHHHHHhcc-CceEEEEeCCCCCCCEeec---
Confidence 68899999999988753210000 011133456677799999999974 6788888887777777764
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC--ccceeeEEeC-HHHHhhccCCCCc
Q 012368 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVT-EKVASAINYGDHG 342 (465)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~-~~i~~~~~~~~~~ 342 (465)
+++|.++|++||+++|+||+|... .... ..+ ++ .|++ +++|++++ |+++|+++++ +++++.+......
T Consensus 236 -l~~i~~la~~~gi~livDea~~~g-~~~~--~~~-~~--~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~ 308 (464)
T 1ibj_A 236 -IRKISEMAHAQGALVLVDNSIMSP-VLSR--PLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS 308 (464)
T ss_dssp -HHHHHHHHHTTTCEEEEECTTTCT-TTCC--GGG-TT--CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCEEEEECCCccc-ccCC--hhh-cC--CEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHh
Confidence 999999999999999999999732 1111 112 33 5665 68899986 7999999998 4787776532222
Q ss_pred CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH----------HHcCCCce----eeeccceEEEEEecC
Q 012368 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK----------LARNPHVK----DVRGLGLIIGIEFDV 408 (465)
Q Consensus 343 ~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~----~~~~~g~~~~i~~~~ 408 (465)
..++.+++.+.++.++|+.+. ..+++..+....+.+.+++. +..+|.+. ..++.|.+++++++.
T Consensus 309 ~g~~~~~~~~~a~~~al~~~~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~ 386 (464)
T 1ibj_A 309 EGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS 386 (464)
T ss_dssp TTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC
T ss_pred cCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC
Confidence 234557888888888776321 11222222223333333221 11222111 123457889998842
Q ss_pred C--hHHHHHHHHHCCceEeecC-------------------------C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 409 S--ATPVVDACRDSGLLVLTAG-------------------------K-GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 409 ~--~~~~~~~l~~~Gv~v~~~~-------------------------~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
. ...+.+.|...||.+..+. . ++++|++++. |++++++++|+++++++
T Consensus 387 ~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 387 VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhhc
Confidence 1 2346666666677665442 1 3679999876 78999999999988653
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-24 Score=212.32 Aligned_cols=314 Identities=16% Similarity=0.128 Sum_probs=186.0
Q ss_pred CCHHHHHHHHHHHhh-cccc--c-----CCCCCHHHHH-HHHHHHhhcCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQANV-LTHV--S-----NMYYSIPQIE-LAKRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~--~-----~~~~~~~~~~-la~~l~~~~~~~~v-~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.||+|++|+.+++.. ...+ . .....+...+ .++++++.++.+.. +++++|++|+..+++.+.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~-------- 113 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL-------- 113 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhc--------
Confidence 689999999998843 2111 0 0111122333 34678888874433 346778999999988664
Q ss_pred CCCCCCceEEEEcCCcccCcccccc--ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE-cccCCCCCc
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV-EPIQGEGGI 261 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~-ep~~~~~G~ 261 (465)
.+++.|++.+++|++....... ..+......++ +...+ ...|+++|+++++++++++|++ +|+++ .
T Consensus 114 ---~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~----~~~d~~~l~~~i~~~~~~~v~~~~~~~~---~ 182 (420)
T 3gbx_A 114 ---QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPY-GIDES----GKIDYDEMAKLAKEHKPKMIIGGFSAYS---G 182 (420)
T ss_dssp ---CTTCEEEEEEEC------------CHHHHSEEEEE-EECTT----CSCCHHHHHHHHHHHCCSEEEECCTTCC---S
T ss_pred ---CCCCEEEecchhhcceeccchhhhhcccceeEEec-cCCcc----CCcCHHHHHHHHHhcCCeEEEEecCccC---C
Confidence 2688999999988664321111 11000000000 00000 0148999999997534667777 44443 2
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCH---HHHhh
Q 012368 262 YSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTE---KVASA 335 (465)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~---~i~~~ 335 (465)
..+ +++|+++|++||++||+||+|. |+.+.|..... .. .+|+++ +||+++ |.+.|++++++ ++++.
T Consensus 183 ~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~ 254 (420)
T 3gbx_A 183 VVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEELYKK 254 (420)
T ss_dssp CCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHHHHHH
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHHHHHH
Confidence 333 8999999999999999999974 44333322111 11 267776 679997 45569999987 77776
Q ss_pred ccCCCCcCCCC-ChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee--ccceEEEEEec--
Q 012368 336 INYGDHGSTFA-GSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR--GLGLIIGIEFD-- 407 (465)
Q Consensus 336 ~~~~~~~~t~~-~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~i~~~-- 407 (465)
+......++++ .+...++++.+++....+ +++.+++.++.+++++.|.+ .+ +..+. ..+.++++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~ 329 (420)
T 3gbx_A 255 LNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN----RG-YKVVSGGTENHLFLLDLVDK 329 (420)
T ss_dssp HHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH----TT-CEEGGGSCSSSEEEEECGGG
T ss_pred hhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh----cC-CeeccCCCCCeEEEEEcCCC
Confidence 65432333333 233444444445544322 34566677777777777665 22 22222 35677788773
Q ss_pred -CChHHHHHHHHHCCceEee-------cCC--CCEEEEecCCC----CcHHHHHHHHHHHHHHHHHh
Q 012368 408 -VSATPVVDACRDSGLLVLT-------AGK--GNVVRLVPPLI----ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 408 -~~~~~~~~~l~~~Gv~v~~-------~~~--~~~lRi~~~~~----~t~e~i~~~l~~l~~~l~~~ 460 (465)
.....+.+.|.++||++.+ +.. +..+||+++.. .+++++++++++|++++++.
T Consensus 330 ~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 330 NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp TCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 2466778888889999987 211 24599988755 45899999999999988764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=201.98 Aligned_cols=289 Identities=16% Similarity=0.151 Sum_probs=192.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC
Q 012368 135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (465)
Q Consensus 135 ~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (465)
..++++...+|+++|+++++.+..++++||++|+..+++ +. .++++|++.++.|++.........
T Consensus 62 ~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~-----------~~gd~Vl~~~~~y~~~~~~~~~~~--- 126 (403)
T 3cog_A 62 SRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LL-----------KAGDQIICMDDVYGGTNRYFRQVA--- 126 (403)
T ss_dssp ----CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TS-----------CTTCEEEEESSCCHHHHHHHHHTG---
T ss_pred cCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-Hh-----------CCCCEEEEeCCCcchHHHHHHHHH---
Confidence 456777789999999999986666677788999999887 43 158899999999988543221110
Q ss_pred CcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCCC
Q 012368 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG-ALLVFDEVQCGLG 293 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~g 293 (465)
......+.+++.+|++++++++++ ++++|++++.++..|.+.+ +++|.++|++|| +++|+||+|.++.
T Consensus 127 ------~~~G~~v~~v~~~d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~ 195 (403)
T 3cog_A 127 ------SEFGLKISFVDCSKIKLLEAAITP-ETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPY 195 (403)
T ss_dssp ------GGGTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTT
T ss_pred ------HHcCCEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccc
Confidence 011134556777799999999975 5788888877777777765 999999999999 9999999998652
Q ss_pred CCCccccccccCCcccEE--EecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..... +..+|++ +++|.+++ | .++|+++++ +++++.+.......+...+++.+.++..+|+.+ +...
T Consensus 196 -~~~~~-----~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l--~~r~ 267 (403)
T 3cog_A 196 -FQRPL-----ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTL--HVRM 267 (403)
T ss_dssp -TCCTT-----TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred -cCCcc-----ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH--HHHH
Confidence 22221 2345766 68899986 4 689999985 788777754333334556888888887777643 2234
Q ss_pred HHHHHHHHHHHHHHHHH----------HHcCCCce----eeeccceEEEEEecCChHHHHHHHHHCCceEee---c----
Q 012368 369 ASVSKKGHYFKETLKQK----------LARNPHVK----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLT---A---- 427 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~----------~~~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~---~---- 427 (465)
++..++...+.+.+++. +..+|... ..++.|.++.+.+........+.|.+.|+++.. +
T Consensus 268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~s 347 (403)
T 3cog_A 268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFES 347 (403)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSSSSC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCcce
Confidence 44444444444444332 11222111 123458888888854445566667778886432 1
Q ss_pred ---------------------CC-CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 428 ---------------------GK-GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 428 ---------------------~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+. ++.+|++++...++++|+.+.+.|++++
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 348 LAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp EEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred eeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 11 3689999998877777777666665543
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=202.87 Aligned_cols=241 Identities=15% Similarity=0.151 Sum_probs=167.9
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..+.++...+|+++|++..+.+.+++++||++|++.++.++. ++++|++.++.||+........+
T Consensus 59 ~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~~~l~~------------~gd~Vi~~~~~y~~~~~~~~~~~ 126 (400)
T 3nmy_A 59 FEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAATSTVMELLD------------AGSHVVAMDDLYGGTFRLFERVR 126 (400)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTSC------------TTCEEEEESSCCHHHHHHHHHTH
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHHHHHcC------------CCCEEEEeCCCchHHHHHHHHhh
Confidence 345667888899999999999998889999999999997543222 68899999999987654332210
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
+......+.+++.+|++++++++++ ++++|++|+.++++|.+.+ +++|+++|++||++||+||+|..
T Consensus 127 --------~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~ 193 (400)
T 3nmy_A 127 --------RRTAGLDFSFVDLTDPAAFKAAIRA-DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS 193 (400)
T ss_dssp --------HHHHCCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred --------HhhcCeEEEEECCCCHHHHHHHhcc-CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 0011234566778899999999975 6889999998888888775 99999999999999999999863
Q ss_pred CCCCCccccccccCCcccEEEecccCCC-ccceee--EE-eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGA--AL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~--v~-~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
. ... ....++..+.+.+++|+++| |.++|. ++ .++++++.+.......+...+|+.+++++..++.+ +..
T Consensus 194 ~-~~~---~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l--~~r 267 (400)
T 3nmy_A 194 P-MLQ---RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTL--PLR 267 (400)
T ss_dssp H-HHC---CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTH--HHH
T ss_pred c-ccC---ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHH--HHH
Confidence 1 111 11123544555578999997 566654 44 46778777754333445567888877777766543 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceee------------------eccceEEEEEec
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVKDV------------------RGLGLIIGIEFD 407 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~i~~~ 407 (465)
.++..++...+.+. +.++|.+..+ +|.|.++++++.
T Consensus 268 ~~~~~~~a~~l~~~----L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 268 MRAHCENALALAQW----LETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp HHHHHHHHHHHHHH----HTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHH----HHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 44445555544444 4455655444 678999999994
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=195.89 Aligned_cols=300 Identities=10% Similarity=-0.027 Sum_probs=194.0
Q ss_pred CCHHHHHHHHHHHhhcccc-cCCCCC--HHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHV-SNMYYS--IPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~-~~~~~~--~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~ 188 (465)
.+|++.+++.+++...... ...++. +...++++++++.++ .++|++++||++|+..+++.+.
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~------------ 82 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV------------ 82 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC------------
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc------------
Confidence 5688999998887653211 111211 236778888888886 4679999999999999998665
Q ss_pred CCceEEEEcCCcccCccc-cccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 189 PATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
.. ++++..+.+++.... .....+. .+..++. .|+++|+ +++ ++++|++++.++.+|.+
T Consensus 83 ~~-~~i~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~--~~~-~~~~v~~~~~~nptG~~ 146 (362)
T 3ffr_A 83 EK-KSFHCVNGSFSKRFYEFAGELGR------------EAYKEEAAFGKGFYPADIT--VPA-DAEIICLTHNETSSGVS 146 (362)
T ss_dssp SS-EEEEEECSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCGGGCC--CCT-TCCEEEEESEETTTTEE
T ss_pred CC-cEEEEcCcHHHHHHHHHHHHhCC------------CeEEEecCCCCCCCHHHHh--ccC-CccEEEEEcCCCCccee
Confidence 13 666666655553211 1111111 1112221 1678887 544 45666666666666766
Q ss_pred cCCHHHHHHHHHHHHHh-CCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccCC
Q 012368 263 SATKEFLQFLRDACDDA-GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYG 339 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~ 339 (465)
.+ +++|.++|++| |+++|+||+|..+... .+... .|+++ ++|+++++..+|++++++++++.+.+.
T Consensus 147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~-----~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~ 215 (362)
T 3ffr_A 147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK-----FDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKAL 215 (362)
T ss_dssp CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC-----CCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHH
T ss_pred CC----HHHHHHHHHhCCCCEEEEecccccCCcc-----cChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhc
Confidence 65 89999999999 9999999998733111 11111 56664 569998544467888898887765431
Q ss_pred CC---------------------cCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 340 DH---------------------GSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 340 ~~---------------------~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
.. ...++.+..++.++.++++.+.+ ++..++.+++.+++.+.| .++|.+...
T Consensus 216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~g~~~~ 291 (362)
T 3ffr_A 216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYI----ESSKVFSFG 291 (362)
T ss_dssp HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----HHCSSEEES
T ss_pred cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH----HHccCceec
Confidence 11 11345677777777788876543 234444555555555554 444433222
Q ss_pred e-----ccceEEEEEecCChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 396 R-----GLGLIIGIEFDVSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 396 ~-----~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
. ..+.++++.++.+..++.+.|.++||.+.++. .++++|++++...+++++++++++|++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 292 VEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 1 23556777774467889999999999998752 24789999998999999999999998764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=195.93 Aligned_cols=312 Identities=11% Similarity=0.052 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHhhcccc---cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012368 115 GDADWIKAVVDQANVLTHV---SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
-+|++++++.+++++.... ...+..+...+++++++++++.+.+++++||++|+..+++.+. . .+++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~--~--------~~gd 83 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALG--I--------GEGD 83 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT--C--------CTTC
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCcC
Confidence 3689999999998764221 1112233478999999999997788899999999999999762 1 1578
Q ss_pred eEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+|++.+++|++....+...+....+. +..+ +.. -|+++|++++++ ++++|++++ ..|...+ ++
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~---~~G~~~~----~~ 147 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNVNALPVFV----DVEADTYC----IDPQLIKSAITD-KTKAIIPVH---LFGSMAN----MD 147 (418)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEE----CBCTTTCS----BCHHHHGGGCCT-TEEEECCBC---CTTCCCC----HH
T ss_pred EEEECCCccHhHHHHHHHcCCEEEEE----ecCCCCCC----cCHHHHHHhhCC-CCeEEEEeC---CcCCccc----HH
Confidence 99999999998876554333221111 1111 111 189999999975 567777543 3454443 99
Q ss_pred HHHHHHHHhCCEEEEeccccCCC-CCCccccccccCCcccEEEe--cccCCCccceeeEEeC-HHHHhhccCCC-CcC--
Q 012368 271 FLRDACDDAGALLVFDEVQCGLG-RTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT-EKVASAINYGD-HGS-- 343 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~g-r~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~-~~i~~~~~~~~-~~~-- 343 (465)
+|.++|++||++||+||+|+.+. ..+... ..++ ..++.+| +|.+++| ++|+++++ +++++.+.... .+.
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~ 223 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNNQRA--GTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVY 223 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEE
T ss_pred HHHHHHHHCCCEEEEECcccccCccCCEec--cccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccc
Confidence 99999999999999999998764 222211 1111 2345566 8999887 99999995 77766553210 000
Q ss_pred ---------CCC--------------ChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccc
Q 012368 344 ---------TFA--------------GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLG 399 (465)
Q Consensus 344 ---------t~~--------------~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g 399 (465)
.|. .+++..+.+...++.+ ++..++.+++.+++.+.| .+.+.+... ...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L----~~~~g~~~~~~~~~ 297 (418)
T 2c81_A 224 CDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDAL----SKIDGIKVMKRPPQ 297 (418)
T ss_dssp CSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHH----TTSTTEEECCCCTT
T ss_pred cccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh----ccCCCcccCCCCCC
Confidence 011 2333333322223211 334444444544444444 444433222 2222
Q ss_pred ----e--EEEEEec------CChHHHHHHHHHC-Cce---EeecCC----------------------------------
Q 012368 400 ----L--IIGIEFD------VSATPVVDACRDS-GLL---VLTAGK---------------------------------- 429 (465)
Q Consensus 400 ----~--~~~i~~~------~~~~~~~~~l~~~-Gv~---v~~~~~---------------------------------- 429 (465)
. ++.+.++ .+..++.+.|.++ ||. +.++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (418)
T 2c81_A 298 VSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPV 377 (418)
T ss_dssp EEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHH
T ss_pred CcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChH
Confidence 2 3335553 2567899999999 999 765310
Q ss_pred -----CCEEEEecCCCC-cHHHHHHHHHHHHHHHHHhhh
Q 012368 430 -----GNVVRLVPPLII-SEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 430 -----~~~lRi~~~~~~-t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+.+|++++..+ |++|++++++.|+++++++..
T Consensus 378 ~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~~ 416 (418)
T 2c81_A 378 SERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFCV 416 (418)
T ss_dssp HHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 147999999999 999999999999999887643
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-22 Score=198.29 Aligned_cols=315 Identities=16% Similarity=0.090 Sum_probs=187.3
Q ss_pred CCHHHHHHHHHHHhh-cccccC----CCCCHH----HHHHHHHHHhhcCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQANV-LTHVSN----MYYSIP----QIELAKRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~~----~~~~~~----~~~la~~l~~~~~~~~v-~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.+|+|++|+.+++.. ....+. ...... ...+++++++.++.+.. +++++|++|++.+++.+.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~-------- 108 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALI-------- 108 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHS--------
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhc--------
Confidence 489999999988743 211111 112222 33455578888874432 455677999999998774
Q ss_pred CCCCCCceEEEEcCCcccCcccccc--ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
.++++|++.+++|++....... ..+... .....+...+. ..|+++|+++++..++++|++.+.+ .|..
T Consensus 109 ---~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~----~~d~~~l~~~i~~~~~~~v~~~~~~--~G~~ 178 (417)
T 3n0l_A 109 ---NPGDKILGMDLSHGGHLTHGAKVSSSGKMY-ESCFYGVELDG----RIDYEKVREIAKKEKPKLIVCGASA--YARV 178 (417)
T ss_dssp ---CTTCEEEEECC----------------CCS-EEEEECCCTTS----SCCHHHHHHHHHHHCCSEEEECCSS--CCSC
T ss_pred ---CCCCEEEecccccccccchhhhhhhhccee-eeEeccCCCCC----CcCHHHHHHHHHhcCCeEEEECCcc--cCcc
Confidence 2689999999999876432111 111000 00000000000 1389999999973345666654433 3555
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEe--cccCCCccceeeEEeC-HHHHhhccC
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT-EKVASAINY 338 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~-~~i~~~~~~ 338 (465)
.+ +++|+++|++||++||+||+|. |+...|.... ... ..|++++ ||++ +|+++|+++++ +++++.+..
T Consensus 179 ~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l-~g~~~G~~~~~~~~~~~~~~~ 250 (417)
T 3n0l_A 179 ID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-YAHVVSSTTHKTL-RGPRGGIIMTNDEELAKKINS 250 (417)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-TCSEEEEESSTTT-CSCSCEEEEESCHHHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-cceEEEeeCcccc-CCCCeeEEEECCHHHHHHHhh
Confidence 54 9999999999999999999964 3211221100 001 2467755 5999 56678999998 788877754
Q ss_pred C-CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee--ccceEEEEEec---CC
Q 012368 339 G-DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR--GLGLIIGIEFD---VS 409 (465)
Q Consensus 339 ~-~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~i~~~---~~ 409 (465)
. .++.+.+.++..+++..+++....+ +++.+++.++.+++.+.|.+ .+ +.... ..+.++++.+. ..
T Consensus 251 ~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~~~ 325 (417)
T 3n0l_A 251 AIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD----RK-FKLVSDGTDNHLVLMSFLDREFS 325 (417)
T ss_dssp HHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH----TT-CEEGGGSCSSSEEEEECTTSSSC
T ss_pred hhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh----CC-ceeccCCCCceEEEEEcccCCCC
Confidence 3 2223334456666666666765332 34555566666666666655 22 11111 33557777773 25
Q ss_pred hHHHHHHHHHCCceEeecCC---------CCEEEEecCC----CCcHHHHHHHHHHHHHHHHHh
Q 012368 410 ATPVVDACRDSGLLVLTAGK---------GNVVRLVPPL----IISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~---------~~~lRi~~~~----~~t~e~i~~~l~~l~~~l~~~ 460 (465)
...+.+.|.++||.+.+... ...+|+.++. .++++++++++++|++++++.
T Consensus 326 ~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 326 GKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp HHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 67788888899999875421 2568997653 357899999999999998754
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=199.27 Aligned_cols=306 Identities=10% Similarity=0.095 Sum_probs=198.0
Q ss_pred CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 012368 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (465)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~ 195 (465)
+|++.+++.+.+... +. . ...+...++++.++++++.+++++++||++|+..+++.+. . .++++|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~-~-~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~--~--------~~gd~Vl~ 77 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YI-A-PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG--V--------KQDDIVLA 77 (394)
T ss_dssp -CCHHHHHHHHHHHT-TT-S-CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcC-Cc-c-CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCCCEEEE
Confidence 367888888887652 11 1 1124578999999999998999999999999999999762 1 15889999
Q ss_pred EcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC--CeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012368 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
.+++|++....+...+....+. +...+.. .|+++|++++++. ++++|++++. .|...+ +++|.
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~v----~~~~~~~----~d~~~l~~~i~~~~~~~~~v~~~~~---~G~~~~----l~~i~ 142 (394)
T 1o69_A 78 SSFTFIASVAPICYLKAKPVFI----DCDETYN----IDVDLLKLAIKECEKKPKALILTHL---YGNAAK----MDEIV 142 (394)
T ss_dssp ESSSCGGGTHHHHHTTCEEEEE----CBCTTSS----BCHHHHHHHHHHCSSCCCEEEEECG---GGCCCC----HHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEE----EeCCCCC----cCHHHHHHHHhcccCCceEEEEECC---CCChhh----HHHHH
Confidence 9999999876554433221111 1111111 2889999988632 4677777762 343333 99999
Q ss_pred HHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeC-HHHHhhccCCCC-c------
Q 012368 274 DACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAINYGDH-G------ 342 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~~~~~~-~------ 342 (465)
++|++||++||+||+|+ |+.+.|... ..++ .+|+.++| |.++ |.++|+++++ +++++.+..... .
T Consensus 143 ~l~~~~~~~li~Dea~~~g~~~~~~~~--~~~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~ 218 (394)
T 1o69_A 143 EICKENDIVLIEDAAEALGSFYKNKAL--GTFG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLH 218 (394)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSS
T ss_pred HHHHHcCCEEEEECcCcccceeCCccc--cccc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCcc
Confidence 99999999999999998 654444311 0111 36888885 6665 4689999995 787776642111 0
Q ss_pred -------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cce--EEEEEecC----
Q 012368 343 -------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LGL--IIGIEFDV---- 408 (465)
Q Consensus 343 -------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~--~~~i~~~~---- 408 (465)
..+..+++.++++++.++.+ ++..++.+++.+++++.|.++ -... ..... .+. ++++.++.
T Consensus 219 ~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~-~~~~--~~~~~~~~~~~~~~i~~~~~~~~ 293 (394)
T 1o69_A 219 YEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEY-FSFL--DELENSRSNRWLSTALINFDKNE 293 (394)
T ss_dssp CCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTT-EECC--CCCTTEECCCSSEEEEESCCGGG
T ss_pred ccccccCcccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc-cccc--CCCCCCcceeEEEEEEecchhhc
Confidence 11114566666665555433 335677777777777777654 1111 11100 122 35565531
Q ss_pred -------------------ChHHHHHHHHHCCceEeecCCC-----------------------CEEEEecCCCCcHHHH
Q 012368 409 -------------------SATPVVDACRDSGLLVLTAGKG-----------------------NVVRLVPPLIISEQEL 446 (465)
Q Consensus 409 -------------------~~~~~~~~l~~~Gv~v~~~~~~-----------------------~~lRi~~~~~~t~e~i 446 (465)
+..++.+.|.++||.+.++... ..+++..+..+|++|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi 373 (394)
T 1o69_A 294 LNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDV 373 (394)
T ss_dssp SCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHH
T ss_pred cccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHH
Confidence 3567899999999998765210 2345545667899999
Q ss_pred HHHHHHHHHHHH
Q 012368 447 DQAVEILCKTLP 458 (465)
Q Consensus 447 ~~~l~~l~~~l~ 458 (465)
++++++|+++++
T Consensus 374 ~~~~~~l~~~~~ 385 (394)
T 1o69_A 374 YEISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=199.99 Aligned_cols=323 Identities=11% Similarity=0.026 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-C----C--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F----A--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~----~--~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~ 189 (465)
|.|++|..+.++.... ..+.+.....+|.+.+++++ + . ....-|.||+.|+..++..+..... ++
T Consensus 65 ~~Vk~A~~~~~~~~~~-~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~-------~p 136 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLD-YEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFD-------AE 136 (420)
T ss_dssp HHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSC-------TT
T ss_pred HHHHHHHHHHhcCCCC-CCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcC-------CC
Confidence 7788887776654321 11222222344555554432 2 2 2345589999999888876653321 26
Q ss_pred CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcc-cCCCCCcccCCH
Q 012368 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATK 266 (465)
Q Consensus 190 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep-~~~~~G~~~~~~ 266 (465)
++.|++.+|+|..+...+...++......++. .++... .|.+.+.+.+. ..+..++++.+ .||+| ..+++
T Consensus 137 gd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~--~~~~~~---~d~~~~~~~l~~~~~~~~vll~~~p~NPtG--~~~~~ 209 (420)
T 4h51_A 137 TTPIYLSDPTWPNHYGVVKAAGWKNICTYAYY--DPKTVS---LNFEGMKKDILAAPDGSVFILHQCAHNPTG--VDPSQ 209 (420)
T ss_dssp TSCEEEEESCCTHHHHHHHHTTCCCEEEEECE--EGGGTE---ECHHHHHHHHHHSCSSCEEEEESSSCTTTC--CCCCH
T ss_pred CCEEEEecCCchhHHHHHHHcCCeEEEeeccc--cccccC---CCHHHHHHHHhccCCCcEEEEeCCCCCCCC--CCCCH
Confidence 89999999999877655554443322110000 001001 15666666654 23344555444 44444 45799
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCCCCc---cccc----cccCCcccEEEecccCCC-ccceeeEEeCHHHHhh---
Q 012368 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAH----EHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASA--- 335 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~----~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~--- 335 (465)
+.+++|.++|+++++++|+||+|.+|...+. .+.. +......-+.+|||.++. |+|+||+++..+..+.
T Consensus 210 ~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 210 EQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHH
Confidence 9999999999999999999999999965432 1111 111112233489999996 9999999875432222
Q ss_pred ----ccCCCCcCCCCChHHHHHHHHHHHHHhc-C---chHHHHHHHHHHHHHHHHHHHHHcCCC---ce-eeeccceEEE
Q 012368 336 ----INYGDHGSTFAGSPLVCNAAIAVLDKIS-N---PAFLASVSKKGHYFKETLKQKLARNPH---VK-DVRGLGLIIG 403 (465)
Q Consensus 336 ----~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~---~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~-~~~~~g~~~~ 403 (465)
+.........+.+..++.++...|..-. . .+.++.++++....|+.|.+.+.+.+. +. ..+..|+|.+
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~ 369 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF 369 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe
Confidence 1111122333455566666666664210 0 111222222333333333333333321 11 1345577766
Q ss_pred EEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 404 IEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 404 i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.+ + .+.++.|.++||++.+++ ||+++ ..+++.|+.++++|.++++++.++
T Consensus 370 ~gl--s-~e~v~~L~e~~Vy~~~~g-----Ris~A-gl~~~ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 370 LGL--S-KAQCEYCQNHNIFITVSG-----RANMA-GLTHETALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp CCC--C-HHHHHHHHHTTEECCTTC-----EEEGG-GCCHHHHHHHHHHHHHHHC-----
T ss_pred cCc--C-HHHHHHHHhCCEEEcCCC-----EEEec-cCCHHHHHHHHHHHHHHHHHhhcC
Confidence 544 2 345678889999988754 88765 358899999999999999988764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=198.78 Aligned_cols=284 Identities=15% Similarity=0.128 Sum_probs=189.5
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+++++|+++++.+.+++++||++|+..+++ +. .++++||+.++.||+........
T Consensus 49 ~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~-----------~~gd~Vi~~~~~y~~~~~~~~~~--- 113 (393)
T 1n8p_A 49 YSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SL-----------PQGSHAVSIGDVYGGTHRYFTKV--- 113 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TS-----------CSSCEEEEESSCCHHHHHHHHHT---
T ss_pred eecCCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-Hc-----------CCCCEEEEeCCCchHHHHHHHHH---
Confidence 3456677788999999999987788888899999999998 43 15789999999998754321000
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh----CCEEEEeccc
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA----GALLVFDEVQ 289 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~----g~llI~DEv~ 289 (465)
.......+.++|.+| ++|++++++ ++++|++++.++++|.+.+ +++|.++|++| |+++|+||+|
T Consensus 114 ------~~~~G~~v~~v~~~d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~ 181 (393)
T 1n8p_A 114 ------ANAHGVETSFTNDLL-NDLPQLIKE-NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTF 181 (393)
T ss_dssp ------STTTCSCCEEESSHH-HHHHHHSCS-SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTT
T ss_pred ------HHHcCcEEEEeCCCh-HHHHHhccc-CceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCc
Confidence 011223456677668 999999975 6888888888888888775 99999999999 9999999999
Q ss_pred cCCCCCCccccccccCCcccEE--EecccCCC-ccce-eeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC
Q 012368 290 CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364 (465)
Q Consensus 290 ~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~ 364 (465)
+.+.+ .... .++ +|++ +++|.+++ |+|+ |+++++ +++++.+...........+++.++++..+++.+
T Consensus 182 ~~~~~-~~~~---~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~-- 253 (393)
T 1n8p_A 182 LSPYI-SNPL---NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTL-- 253 (393)
T ss_dssp THHHH-CCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH--
T ss_pred ccccc-CCHH---HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchH--
Confidence 86533 2221 123 5665 68899996 7899 999885 788877754322112234677777666666532
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCC-cee------------------eec-c-ceEEEEEecCC---hHHHHHHHHHC
Q 012368 365 PAFLASVSKKGHYFKETLKQKLARNPH-VKD------------------VRG-L-GLIIGIEFDVS---ATPVVDACRDS 420 (465)
Q Consensus 365 ~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~------------------~~~-~-g~~~~i~~~~~---~~~~~~~l~~~ 420 (465)
+...++..++.+.+.+.|++ ++. +.. .++ . |.++++.++.. ...+...|...
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~----~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~ 329 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAA----DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLF 329 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcc
Confidence 22334444555555554433 322 111 123 5 78899998533 23344444322
Q ss_pred CceEe----------e---c------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 421 GLLVL----------T---A------------G-KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 421 Gv~v~----------~---~------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
++.+. | . + ..+.+|++++...++++++.+.++|+++
T Consensus 330 ~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 330 TLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp EECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 32221 1 0 1 1368999999999999999988888754
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-22 Score=198.58 Aligned_cols=288 Identities=16% Similarity=0.159 Sum_probs=190.5
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..+.++...+++++|+++++.+..++++||++|+..+++.+.. ++++||+.++.|++.........
T Consensus 106 ~~y~r~~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~~~~~~~~ 174 (445)
T 1qgn_A 106 FEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP-----------AGGHIVTTTDCYRKTRIFIETIL 174 (445)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC-----------SSCEEEEETTSCHHHHHHHHHTG
T ss_pred ccccCCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHHHHHHHHH
Confidence 3345567788899999999999866778888899999999986541 58899999999987543211000
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
......+.+++.+|+++|+++++++++++|++++.++.+|.+.+ +++|.++|++||++||+||+|..
T Consensus 175 ---------~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~ 241 (445)
T 1qgn_A 175 ---------PKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT 241 (445)
T ss_dssp ---------GGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC
T ss_pred ---------HHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcc
Confidence 01123456677789999999997544388888888777787765 89999999999999999999974
Q ss_pred CCCCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 292 LGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
+ ... ......+|+++ ++|.+++ | .++|++++++++++.+...........+++.+.++...++.+ ...
T Consensus 242 ~-~~~-----~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l--~~r 313 (445)
T 1qgn_A 242 P-LNQ-----KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTL--HLR 313 (445)
T ss_dssp T-TTC-----CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGH--HHH
T ss_pred c-ccC-----CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHH--HHH
Confidence 3 111 12234578875 7799986 4 589999999998887753211111224666666655555433 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCC---hHHHHHHHHHCCceEee
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVS---ATPVVDACRDSGLLVLT 426 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~---~~~~~~~l~~~Gv~v~~ 426 (465)
.++..++.+++.+.|+ ++|.+.. .++.|.++++.+... ...+.+.|...++.+..
T Consensus 314 ~~~~~~~a~~l~~~L~----~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~ 389 (445)
T 1qgn_A 314 VQQQNSTALRMAEILE----AHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSF 389 (445)
T ss_dssp HHHHHHHHHHHHHHHH----TCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHh----cCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccC
Confidence 3344444555555444 4443211 134688999998533 33445444322332211
Q ss_pred c-------------------------CC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 427 A-------------------------GK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 427 ~-------------------------~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+ +. ++.+|+++. .||++++++.|+++++.
T Consensus 390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 1 11 368999876 45799999999998864
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=194.19 Aligned_cols=337 Identities=10% Similarity=0.029 Sum_probs=199.5
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH----HHHHHHHHHHhhcCC---CeEEecCCHHHH
Q 012368 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI----PQIELAKRLVACSFA---DRVFFSNTGTEA 167 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~----~~~~la~~l~~~~~~---~~v~~~~sG~eA 167 (465)
..+..|+|+..+ ++.+|.+.+++....... +.......+ .+.+++++|++.++. +.++||+||++|
T Consensus 98 ~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a 170 (497)
T 2qma_A 98 TQHPDCIAHLHT------PPLMPAVAAEAMIAALNQ-SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQS 170 (497)
T ss_dssp TTSTTBCSSSCC------CCBHHHHHHHHHHHHHCC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHH
T ss_pred CCCCCeeEeCCC------CCcHHHHHHHHHHHhhcc-cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHH
Confidence 356678887664 346788888876654321 111111122 245567778988873 789999999999
Q ss_pred HHHHHHHHHHHhhh---------cCCCCCCC--Cc-eEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC--
Q 012368 168 NEAAIKFARKFQRH---------SNPDSKEP--AT-EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-- 233 (465)
Q Consensus 168 ~~~al~~a~~~t~~---------~~~~~~~~--~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (465)
+..++++++.+... .+. ++ ++ .|++.++.+ .....+....+... ..+..+|.+
T Consensus 171 ~~~al~~ar~~~~~~~~~~~~~~~G~---~~~~g~~~v~~s~~~h-~s~~~~~~~~g~g~---------~~v~~v~~~~~ 237 (497)
T 2qma_A 171 NQMGLMLARDWIADKLSGHSIQKLGL---PDYADKLRIVCSKKSH-FTVQKSASWMGLGE---------KAVMTVDANAD 237 (497)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS---CGGGGGEEEEEETTSC-THHHHHHHHTTSCG---------GGEEEECBCTT
T ss_pred HHHHHHHHHHHHHHhhcccchhhccc---ccccCCeEEEECCCch-HHHHHHHHHcCCCc---------ccEEEEecCCC
Confidence 99999998653210 000 00 24 455555444 43333322221100 022333333
Q ss_pred ---CHHHHHhhcCCC----C-eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccC
Q 012368 234 ---NIEATRKLIQPG----K-TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305 (465)
Q Consensus 234 ---d~~~le~~l~~~----~-~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~ 305 (465)
|+++|+++|+++ . +.+|++...++..|.+.+ +++|.++|++||++||+|++|.++..... +.....+
T Consensus 238 ~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~g 312 (497)
T 2qma_A 238 GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKG 312 (497)
T ss_dssp SSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTT
T ss_pred CcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcC
Confidence 789999988632 2 335665554555566655 99999999999999999999987654333 2222335
Q ss_pred C-cccEEEe--cccCCCccceeeEEeCHH-HHhhccCCC----CcCCCCChHHHH----------HHHHHHHHHhcCc--
Q 012368 306 I-FPDIMTL--AKPLAGGLPIGAALVTEK-VASAINYGD----HGSTFAGSPLVC----------NAAIAVLDKISNP-- 365 (465)
Q Consensus 306 ~-~pdi~t~--sK~lg~G~~iG~v~~~~~-i~~~~~~~~----~~~t~~~~~~~~----------~aa~a~L~~~~~~-- 365 (465)
+ .+|++++ +|++++++++|+++++++ .++.+.... ...+...++... .+..++++.+..+
T Consensus 313 i~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~ 392 (497)
T 2qma_A 313 VERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKAL 392 (497)
T ss_dssp GGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHH
T ss_pred cccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHH
Confidence 5 6788876 799988889999998754 345443210 001101122211 1233455555333
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHcCCCcee-eeccceEEEEEecCC-------hHHHHHHHHHCCceEeecC---CCCEE
Q 012368 366 -AFLASVSKKGHYFKETLKQKLARNPHVKD-VRGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAG---KGNVV 433 (465)
Q Consensus 366 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~i~~~~~-------~~~~~~~l~~~Gv~v~~~~---~~~~l 433 (465)
++.++..++.+++.+.| .+.+.+.. .+..+.++.+.+... ..++.+.|.++|+.+.+.. ...++
T Consensus 393 ~~~~~~~~~~a~~l~~~L----~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~l 468 (497)
T 2qma_A 393 GDMYDHLLAQTLEVADMI----RTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTAL 468 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH----HTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHH----hhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEE
Confidence 34444555555555554 44443322 134456777776321 2357778889999886431 12579
Q ss_pred EEec-CCCCcHHHHHHHHHHHHHHHHHh
Q 012368 434 RLVP-PLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 434 Ri~~-~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|+++ +..+|++|+++++++|+++++++
T Consensus 469 Ris~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 469 KFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9997 88999999999999999988764
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=187.87 Aligned_cols=168 Identities=21% Similarity=0.149 Sum_probs=128.2
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..+.++...+++++|+++++.+..++++||++|+..+++.+. .++++||+.+++||+.........
T Consensus 50 ~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~-----------~~gd~vi~~~~~~~~~~~~~~~~~ 118 (421)
T 2ctz_A 50 NIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-----------QAGDNIVSTPNLYGGTFNQFKVTL 118 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSCCCHHHHHHHHTHH
T ss_pred CcccCCCChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHHH
Confidence 334455667789999999999987677888889999999998763 158899999999998765442110
Q ss_pred CCCCcCCCCCCCCCCceEe-eCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 012368 212 SKEHYRSPFEPVMPGVNFV-EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
. .....+.++ +.+|++++++++++ ++++|++++.++.+|.+.+ +++|+++|++||+++|+||+|+
T Consensus 119 ~---------~~g~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~ 184 (421)
T 2ctz_A 119 K---------RLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFG 184 (421)
T ss_dssp H---------HTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGG
T ss_pred H---------HcCCEEEEECCCCCHHHHHHhhcc-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcc
Confidence 0 011234456 66699999999975 6889999998888888766 9999999999999999999996
Q ss_pred CCCCCCccccccccCCcccEE--EecccCCC-ccceeeEEeC
Q 012368 291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVT 329 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~ 329 (465)
++|..+..+ +..+|++ +++|++++ |.|+|++++.
T Consensus 185 ~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 185 MGGYLLRPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp GGGTSCCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred cccccCCcc-----ccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 566544332 2347877 68899997 7899888774
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-20 Score=182.01 Aligned_cols=305 Identities=14% Similarity=0.136 Sum_probs=197.4
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii 194 (465)
-+|++++++.++++... .++.+...++++.++++++.+.+++++||++|+..+++.++.. ...+ ..++++|+
T Consensus 13 ~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~-~~~~---~~~g~~Vi 84 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKM----FTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFT-KKPR---LKKGDEII 84 (390)
T ss_dssp CCHHHHHHHHHHHHHTC----CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSS-SSCS---CCTTCEEE
T ss_pred CCHHHHHHHHHHHHcCC----CCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhh-hhcC---CCCcCEEE
Confidence 46889999999887632 2346678899999999999778999999999999999876310 0000 02578999
Q ss_pred EEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012368 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 195 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
+..++||+....+...+....+. +..++ .. -|+++|++++++ ++++|++.+.. |...+ +++|.
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~~~---g~~~~----~~~i~ 148 (390)
T 3b8x_A 85 VPAVSWSTTYYPLQQYGLRVKFV----DIDINTLN----IDIESLKEAVTD-STKAILTVNLL---GNPNN----FDEIN 148 (390)
T ss_dssp EESSSCHHHHHHHHHTTCEEEEE----CBCTTTCS----BCHHHHHHHCCT-TEEEEEEECGG---GCCCC----HHHHH
T ss_pred ECCCCcHHHHHHHHHcCCEEEEE----ecCccccC----cCHHHHHHHhCc-CCeEEEEECCc---cChhh----HHHHH
Confidence 99999998876554333221111 11111 00 189999999975 56666664322 32233 99999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc---cceeeEEeCH-HHHhhccC---CC------
Q 012368 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG---LPIGAALVTE-KVASAINY---GD------ 340 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G---~~iG~v~~~~-~i~~~~~~---~~------ 340 (465)
++|++||++||+||+|+. |.. +....++..+|+.++||..+.+ .+.|++++++ ++.+.+.+ ..
T Consensus 149 ~l~~~~~~~li~D~a~~~-g~~---~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~ 224 (390)
T 3b8x_A 149 KIIGGRDIILLEDNCESM-GAT---FNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLP 224 (390)
T ss_dssp HHHTTSCCEEEEECTTCT-TCE---ETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTTSC
T ss_pred HHHHHcCCEEEEECcCcc-cCE---ECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCcccc
Confidence 999999999999999982 111 1223456678999988654421 1348888875 55543321 11
Q ss_pred ----------------------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee--
Q 012368 341 ----------------------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-- 396 (465)
Q Consensus 341 ----------------------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-- 396 (465)
.+.++..+++.++++++.|+.+ ++..++.+++.+++.+.|. +.+.+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~ 298 (390)
T 3b8x_A 225 KKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL--PRFISVRRKNAEYFLDKFK----DHPYLDVQQET 298 (390)
T ss_dssp SEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHT----TCSSEEECCCC
T ss_pred ccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc----CCCCcccCCCC
Confidence 0122336788888887777654 2455556666666655554 343222111
Q ss_pred ccce--EEEEEec----CChHHHHHHHHHCCceEeec-------C-C--C------------------CEEEEecCCCCc
Q 012368 397 GLGL--IIGIEFD----VSATPVVDACRDSGLLVLTA-------G-K--G------------------NVVRLVPPLIIS 442 (465)
Q Consensus 397 ~~g~--~~~i~~~----~~~~~~~~~l~~~Gv~v~~~-------~-~--~------------------~~lRi~~~~~~t 442 (465)
.... .+.+.++ .+..++.+.|.++||.+.+. . + . +.+|+.++..+|
T Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t 378 (390)
T 3b8x_A 299 GESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIEL 378 (390)
T ss_dssp SBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCC
T ss_pred CCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCC
Confidence 1222 3445553 25678999999999988752 1 0 0 258999999999
Q ss_pred HHHHHHHHHHH
Q 012368 443 EQELDQAVEIL 453 (465)
Q Consensus 443 ~e~i~~~l~~l 453 (465)
++|++++++.|
T Consensus 379 ~~di~~i~~~l 389 (390)
T 3b8x_A 379 FDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999999876
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-22 Score=199.17 Aligned_cols=274 Identities=14% Similarity=0.048 Sum_probs=171.4
Q ss_pred HHHHHHHHhhcC-------C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc----eEEEEcCCcccCccccccc
Q 012368 143 IELAKRLVACSF-------A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT----EFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 143 ~~la~~l~~~~~-------~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~----~ii~~~~~yhg~~~~~~~~ 210 (465)
.+|++.++++++ . ++|++|+|+++|+..+++.+.. +++ .|++.+|+|+++...+...
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~-----------~Gd~~~~~Vlv~~P~y~~~~~~~~~~ 139 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS-----------LARSQPVSVVAAAPFYSTYVEETTYV 139 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH-----------TSSSSSEEEEECSSCCTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC-----------CCCCCcceEEEcCCCchhHHHHHHHc
Confidence 445555554432 4 5899999999999999987753 577 8999999998876544332
Q ss_pred cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEecc
Q 012368 211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEV 288 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv 288 (465)
+. .+..++. |.+.++ .++...+++++|+|++|.+. + +|.+ ++|+ +++|+||+
T Consensus 140 g~-------------~~~~~~~-d~~~l~---~~~~k~v~l~~p~NPtG~~~--~-----~l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 140 RS-------------GMYKWEG-DAWGFD---KKGPYIELVTSPNNPDGTIR--E-----TVVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp CB-------------TTEEEEE-ESTTCC---CCSCEEEEEESSCTTTCCCC--C-----CCC-------CCCEEEEECT
T ss_pred CC-------------eEEEecC-CHHHcC---CCCCEEEEECCCCCCCchhH--H-----HHHH--HhhcCCCEEEEeCC
Confidence 21 1112222 222222 23233444667766665443 3 2333 2266 99999999
Q ss_pred ccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc---
Q 012368 289 QCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--- 363 (465)
Q Consensus 289 ~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--- 363 (465)
|.. +.. ..... ..+....+.+|||.++ .|+|+||+++ ++++++.+.......+++.+++++.++.++|+...
T Consensus 194 y~~-~~~-~~l~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~ 270 (391)
T 3bwn_A 194 YYW-PHY-TPITR-RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETC 270 (391)
T ss_dssp TCS-TTT-SCCCC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCC-CCC-Ccccc-CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhc
Confidence 973 211 11111 2333445568999998 5999999997 88988877643333356788999999999998642
Q ss_pred -----CchHHHHHHHHHHHHHHHHHHHHHcCCCceee--------------eccceEEEEEecCChHHHHHHHHHCCceE
Q 012368 364 -----NPAFLASVSKKGHYFKETLKQKLARNPHVKDV--------------RGLGLIIGIEFDVSATPVVDACRDSGLLV 424 (465)
Q Consensus 364 -----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------------~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v 424 (465)
.+.+.+++++.....++.+.+.+.+++.+... +..|.++|+.++. ...+.+.|.++||.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~gV~v 349 (391)
T 3bwn_A 271 KSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE-ETDLVSELRRHKVMS 349 (391)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS-SCCHHHHHHHTTEEC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc-HHHHHHHHHHCCEEE
Confidence 13445555555555555555555555422111 2335578888742 234666777899999
Q ss_pred eecC---C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 425 LTAG---K-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 425 ~~~~---~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++. . .+++||++. .+++++++++++|++++++
T Consensus 350 ~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 350 RAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred ccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 9863 1 368999876 4899999999999887654
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-21 Score=190.25 Aligned_cols=292 Identities=12% Similarity=0.039 Sum_probs=189.1
Q ss_pred ccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc
Q 012368 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 131 ~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~ 210 (465)
.+.++.+.++...+++++|+++.+.+.+++++||++|+..+++.+. .++|+||+.++.|++........
T Consensus 73 ~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~ 141 (415)
T 2fq6_A 73 ELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFI-----------EQGDHVLMTNTAYEPSQDFCSKI 141 (415)
T ss_dssp SCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTTCEEEEETTSCHHHHHHHHHT
T ss_pred CccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHH
Confidence 3445667788899999999999997788888999999999988543 16899999999998765322110
Q ss_pred cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCEEEEecc
Q 012368 211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD--AGALLVFDEV 288 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv 288 (465)
. ......+.+++.+|+++|++++++ ++++|+++..++..|.+.+ +++|.++|++ ||+++|+|++
T Consensus 142 l---------~~~G~~v~~v~~~d~~~le~ai~~-~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a 207 (415)
T 2fq6_A 142 L---------SKLGVTTSWFDPLIGADIVKHLQP-NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNT 207 (415)
T ss_dssp G---------GGGTCEEEEECTTCGGGGGGGCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECT
T ss_pred H---------HHcCcEEEEECCCCHHHHHHhhcc-CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECC
Confidence 0 011233456677799999999975 5788888887777787765 8999999999 9999999999
Q ss_pred ccCCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC
Q 012368 289 QCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364 (465)
Q Consensus 289 ~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~ 364 (465)
|... ...... ....|++ +++|.+++ | ..+|++++++++++.+...........+|..+.++...++.+
T Consensus 208 ~a~~-~~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l-- 279 (415)
T 2fq6_A 208 WAAG-VLFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTL-- 279 (415)
T ss_dssp TTTT-TSSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH--
T ss_pred Cccc-ccCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH--
Confidence 8742 112221 2235666 57799986 4 457999998887776653211111234566666555556543
Q ss_pred chHHHHHHHHHHHHHHHHHHH--HHc--CCCcee----------eeccceEEEEEecCC--hH---HHHHHHHHCCceEe
Q 012368 365 PAFLASVSKKGHYFKETLKQK--LAR--NPHVKD----------VRGLGLIIGIEFDVS--AT---PVVDACRDSGLLVL 425 (465)
Q Consensus 365 ~~~~~~~~~~~~~l~~~l~~~--~~~--~~~~~~----------~~~~g~~~~i~~~~~--~~---~~~~~l~~~Gv~v~ 425 (465)
+...++..++...+.+.|++. +.. +|.... .++.|.++++.++.. .. .+.+.|.-.++.+.
T Consensus 280 ~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s 359 (415)
T 2fq6_A 280 GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYS 359 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEecc
Confidence 233444555555665555442 000 121100 124678889988531 22 23333221121111
Q ss_pred ------------e-----------cC-CCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 426 ------------T-----------AG-KGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 426 ------------~-----------~~-~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
| .+ .++.+|+++.+..++++++.+.++|++
T Consensus 360 ~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 360 WGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 1 11 136899999999999999888888764
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=195.43 Aligned_cols=317 Identities=12% Similarity=-0.021 Sum_probs=198.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhh-cccc--cC--C-C---CCHHHHHHHHHHHhhc----CCCeEEecCC
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHV--SN--M-Y---YSIPQIELAKRLVACS----FADRVFFSNT 163 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~-~~~~--~~--~-~---~~~~~~~la~~l~~~~----~~~~v~~~~s 163 (465)
.+..+||..+.. .++ .++.+++++.+.+.. ..+. +. . + ..+.++++++++.+.. ..++|++|+|
T Consensus 55 ~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G 131 (427)
T 2hox_A 55 QGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVG 131 (427)
T ss_dssp TTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred CCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCC
Confidence 445678877655 333 346677787776632 1111 11 1 1 1223455555554332 2679999999
Q ss_pred HHHHHHHHHHHH--------HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH
Q 012368 164 GTEANEAAIKFA--------RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (465)
Q Consensus 164 G~eA~~~al~~a--------~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (465)
+++|+.++++.+ . .+++.|++.+|+|+++.......+... .... .|+
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~-----------~~Gd~Vlv~~P~y~~~~~~~~~~g~~~-------------~~~~-~d~ 186 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPD-----------APESKVVAHAPFYPVFREQTKYFDKKG-------------YVWA-GNA 186 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTT-----------SCCEEEEECSSCCHHHHHHHHHSCBTT-------------EEEE-EEG
T ss_pred HHHHHHHHHHHHhhccccccC-----------CCCCEEEEeCCCcccHHHHHHHcCCee-------------eeec-CCH
Confidence 999999999866 3 268999999999987765544332211 0111 277
Q ss_pred HHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecc
Q 012368 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315 (465)
Q Consensus 236 ~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK 315 (465)
++|+++++++...+++++|+|++|.++ + +. ++ ++..|.||.+.+ ... ...... .+...-+.+|||
T Consensus 187 ~~l~~~~~~~~k~v~l~~p~NPtG~~~--~-~~-------l~--~~~~i~d~~~~~-~~~-s~~~~~-~~~~i~~~S~SK 251 (427)
T 2hox_A 187 ANYVNVSNPEQYIEMVTSPNNPEGLLR--H-AV-------IK--GCKSIYDMVYYW-PHY-TPIKYK-ADEDILLFTMSK 251 (427)
T ss_dssp GGGTTCSCGGGEEEEEESSCTTTCCCC--C-CS-------ST--TCEEEEECTTCS-TTT-SCCCSC-BCCSEEEEEHHH
T ss_pred HHHHHhhcCCceEEEEcCCCCCccccc--H-HH-------Hc--CCCEEEeecccC-CCC-CccccC-CCceEEEEeChh
Confidence 888888875444455667776665433 3 32 22 566788887642 110 111111 233334457899
Q ss_pred cCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc---------CchHHHHHHHHHHHHHHHHHH
Q 012368 316 PLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---------NPAFLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 316 ~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~---------~~~~~~~~~~~~~~l~~~l~~ 384 (465)
.++ .|+|+||+++ ++++++.+.......+++.+++++.++.++|+... .+++.++.++.....++.|.+
T Consensus 252 ~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (427)
T 2hox_A 252 FTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITA 331 (427)
T ss_dssp HTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 998 5999999999 58988887654334456788899999888887531 134444444444444555555
Q ss_pred HHHcCCCcee---------------eeccceEEEEEecCChHHHHHHHH-HCCceEeecC----CCCEEEEecCCCCcHH
Q 012368 385 KLARNPHVKD---------------VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAG----KGNVVRLVPPLIISEQ 444 (465)
Q Consensus 385 ~~~~~~~~~~---------------~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~lRi~~~~~~t~e 444 (465)
.+.+.+.+.. .+..|+|+|+.+..+..++++.|+ ++||.+.++. ..+++|+++. .+++
T Consensus 332 ~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e 409 (427)
T 2hox_A 332 LLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQD 409 (427)
T ss_dssp HHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHH
T ss_pred HHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEec--CCHH
Confidence 5555532211 122378888888544556777776 7899998863 1368999876 3889
Q ss_pred HHHHHHHHHHHHHH
Q 012368 445 ELDQAVEILCKTLP 458 (465)
Q Consensus 445 ~i~~~l~~l~~~l~ 458 (465)
++++++++|.++++
T Consensus 410 ~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 410 DFDQLMYYLKDMVK 423 (427)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998874
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=183.67 Aligned_cols=316 Identities=11% Similarity=0.033 Sum_probs=190.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc-------ccCCCC--CHHHHHHHHHHHhhcC-CC--e-EEecCC
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-------VSNMYY--SIPQIELAKRLVACSF-AD--R-VFFSNT 163 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-------~~~~~~--~~~~~~la~~l~~~~~-~~--~-v~~~~s 163 (465)
++.|+|..+. . ..+|+|++|+.+.+..... ....++ .+...+++++++++++ .+ + +++|+|
T Consensus 3 ~~~~l~~~~~-----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g 76 (362)
T 2c0r_A 3 ERAYNFNAGP-----A-ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG 76 (362)
T ss_dssp CCCEECCSSS-----C-CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH
T ss_pred cceeeccCCC-----C-CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC
Confidence 4456665442 2 2789999999998754211 011111 1236788899999888 32 6 477899
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCC--CceEeeCCCHHHHHh
Q 012368 164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRK 240 (465)
Q Consensus 164 G~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~ 240 (465)
|++|+..+++.+. .++++|++.++.+++... ......+...+. +... +.... .|+++++
T Consensus 77 ~t~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~v----~~~~~~~~~~~--~~~~~~~- 138 (362)
T 2c0r_A 77 ASTQFAMIPMNFL-----------KEGQTANYVMTGSWASKALKEAKLIGDTHVA----ASSEASNYMTL--PKLQEIQ- 138 (362)
T ss_dssp HHHHHHHHHHHHC-----------CTTCEEEEEECSHHHHHHHHHHHHHSCEEEE----EECGGGTTCSC--CCGGGCC-
T ss_pred chHHHHHHHHhcC-----------CCCCeEEEEecCcHhHHHHHHHHHhCCeEEE----ecccccccccC--CCHHHcc-
Confidence 9999999998664 157889888877655421 111111111111 1000 00000 1333332
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCC
Q 012368 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLA 318 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg 318 (465)
+++ ++++|++.+.++.+|....+ +++| ||+++|+||+|..+ .. ..... .. |++ +++|++|
T Consensus 139 -i~~-~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~~~-~~--~~~~~--~~--d~~~~s~~K~~g 200 (362)
T 2c0r_A 139 -LQD-NAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSDIL-SR--PFDLN--QF--GLVYAGAQKNLG 200 (362)
T ss_dssp -CCT-TEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTTTT-SS--CCCGG--GC--SEEEEETTTTTC
T ss_pred -cCC-CcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhhcc-CC--ccchh--HC--cEEEEecccccc
Confidence 544 56666665545555654222 4444 89999999999733 21 11111 12 554 5789997
Q ss_pred C-ccceeeEEeCHHHHhhccCC------------CCcCCCCChHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHH
Q 012368 319 G-GLPIGAALVTEKVASAINYG------------DHGSTFAGSPLVCNAAIAVLDKISN----PAFLASVSKKGHYFKET 381 (465)
Q Consensus 319 ~-G~~iG~v~~~~~i~~~~~~~------------~~~~t~~~~~~~~~aa~a~L~~~~~----~~~~~~~~~~~~~l~~~ 381 (465)
. | +|++++++++++.+.+. .....++.+++++.++.++|+.+.+ +...++.+++.+++.+.
T Consensus 201 ~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (362)
T 2c0r_A 201 PSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDA 278 (362)
T ss_dssp CSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4 5 89999999988776531 0122346678888999999987543 23344444444555444
Q ss_pred HHHHHHcCC-Cceee----eccceEEEEEec--CChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHH
Q 012368 382 LKQKLARNP-HVKDV----RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 382 l~~~~~~~~-~~~~~----~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
| .+.+ ..... ...+.++++.++ .+..++.+.|.++||.+.++.. .+.+|+++...++++|++++++.|
T Consensus 279 L----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l 354 (362)
T 2c0r_A 279 I----DQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFM 354 (362)
T ss_dssp H----HTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHH
T ss_pred H----HHcCCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4 4444 21111 112445666663 2456799999999998776432 356999998888999999999999
Q ss_pred HHHHHHh
Q 012368 454 CKTLPVL 460 (465)
Q Consensus 454 ~~~l~~~ 460 (465)
++++++.
T Consensus 355 ~~~~~~~ 361 (362)
T 2c0r_A 355 EHFKRSR 361 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9887653
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=195.50 Aligned_cols=284 Identities=12% Similarity=0.038 Sum_probs=182.3
Q ss_pred CCHHHHHHHHHHHhhcCC-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012368 138 YSIPQIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
+.....++++++++ ++. +.+++++|+++|+..+++++.. ++++|++..++|++........+....+
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~-----------~gd~Vlv~~~~h~s~~~~~~~~G~~~~~ 122 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQ-----------KKGDILMARNVHKSVLHALDISQQEGHF 122 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTT-----------SSSCEEECTTCCHHHHHHHHHHTCCEEE
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcC-----------CCCEEEEecCccHHHHHHHHHcCCeEEE
Confidence 34457788899999 884 5789999999999999997641 6889999999998877655443332222
Q ss_pred CCCCCCC--CCC--c-eEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 217 RSPFEPV--MPG--V-NFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 217 ~~~~~~~--~~~--~-~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
. +. ..+ . ..+ |+++| +.+ ++++|++++ .++.|.+.+ +++|.++|++||++||+||+|++
T Consensus 123 v----~~~~~~~~~~~~~~---d~~~l---~~~-~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~ 186 (446)
T 2x3l_A 123 I----ETHQSPLTNHYNKV---NLSRL---NND-GHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGA 186 (446)
T ss_dssp C----EEEECTTTSSEEEE---EC-----------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCT
T ss_pred E----eCeeccccCcCCCC---CHHHH---cCC-CceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhh
Confidence 1 11 111 0 111 45555 333 456666666 333666655 89999999999999999999986
Q ss_pred -CCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHh--hccCC-CCcCCCCChHHHHHHHHHHHHHhcC-
Q 012368 292 -LGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVAS--AINYG-DHGSTFAGSPLVCNAAIAVLDKISN- 364 (465)
Q Consensus 292 -~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~--~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~- 364 (465)
+...+........ .+|+++.| |+++++.++|++++++++++ .+... ....+.+.+...+++..++++.+..
T Consensus 187 ~~~f~~~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~ 264 (446)
T 2x3l_A 187 HFGLQGFPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTY 264 (446)
T ss_dssp TTTSTTSCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHC
T ss_pred hhccCCCCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 3222321122222 36787655 98887778899999877654 22211 1122334566666665556665533
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe-cCChHHHHHHHHHCCceEeecCCCCEEEEecCCCC
Q 012368 365 --PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF-DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLII 441 (465)
Q Consensus 365 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~ 441 (465)
+++.++.+++.+++++. .+... ....+..+++.+ ..+..++.+.|.++||.+...+. +.+|++++...
T Consensus 265 g~~~~~~~~~~l~~~l~~~------g~~~~--~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~-~~iRi~~~~~~ 335 (446)
T 2x3l_A 265 DSTLFFAKRAQLIECLENK------GFEML--QVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADD-YQALAILPLWH 335 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHH------TCEEE--ECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEECS-SCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHHHHc------CCEEC--cCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecCC-CEEEEEeecCC
Confidence 22566666666666554 22111 111244667776 34677899999999999973444 67999999888
Q ss_pred cHHHHHHHHHHHHHHHHHhh
Q 012368 442 SEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 442 t~e~i~~~l~~l~~~l~~~~ 461 (465)
|++++ +++++|+++++.+.
T Consensus 336 t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 336 HDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp TTCCC-CHHHHHHHHHTCCC
T ss_pred CHHHH-HHHHHHHHHHHhhc
Confidence 99999 99999999886653
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-19 Score=180.26 Aligned_cols=327 Identities=12% Similarity=-0.030 Sum_probs=191.3
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCC--HHHHHHHHHHHhhcCC--C-----eEEecCCHHHHHHHHHHHHHHHhhh----
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYS--IPQIELAKRLVACSFA--D-----RVFFSNTGTEANEAAIKFARKFQRH---- 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~~--~-----~v~~~~sG~eA~~~al~~a~~~t~~---- 181 (465)
.+|.+.+++.+++......+..++. ..+.++++++++.++. + .+++++||+||+..++..++.....
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999998887643222222221 2256788888888872 2 3999999999999999887642110
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCC
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G 260 (465)
.+.. ..+++||+.+ .|.....+....+..... .+..+ +.. -|+++|+++|+++ +++|++...++..|
T Consensus 134 ~G~~--~~~~~vi~~~--~h~~~~~~~~~~G~~v~~---v~~~~~~~~----~d~~~l~~~i~~~-t~~v~~~~~~n~tG 201 (452)
T 2dgk_A 134 AGKP--TDKPNLVCGP--VQICWHKFARYWDVELRE---IPMRPGQLF----MDPKRMIEACDEN-TIGVVPTFGVTYTG 201 (452)
T ss_dssp TTCC--CSCCEEEESS--CCHHHHHHHHHTTCEEEE---CCCBTTBCS----CCHHHHHHHCCTT-EEEEECBBSCTTTC
T ss_pred cCCC--CCCcEEEECC--CcHHHHHHHHHcCceEEE---EecCCCCCe----ECHHHHHHHHhhC-CEEEEEEcCCcCCc
Confidence 0000 0134677766 555443333322221111 11111 111 2899999999764 55555444444456
Q ss_pred cccCCHHHHHHHHHHHHHh------CCEEEEeccccCCCC---CCc-cccccccCCcccEEEec--ccCCCccceeeEEe
Q 012368 261 IYSATKEFLQFLRDACDDA------GALLVFDEVQCGLGR---TGY-LWAHEHYGIFPDIMTLA--KPLAGGLPIGAALV 328 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~gr---~g~-~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~ 328 (465)
.+.+ +++|.++|++| |+++++|++|.++.. .+. .+.... ...|+++++ |.+.+|+++|++++
T Consensus 202 ~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~~~~~~~G~~~~ 275 (452)
T 2dgk_A 202 NYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFGLAPLGCGWVIW 275 (452)
T ss_dssp BBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCCSSCEEEEE
T ss_pred ccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECcccccCCCCCeEEEEE
Confidence 6655 99999999996 999999999987531 111 011111 135766654 86667899999999
Q ss_pred CHH-HH-hhcc--CCCCc---------CCCCC-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 329 TEK-VA-SAIN--YGDHG---------STFAG-SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 329 ~~~-i~-~~~~--~~~~~---------~t~~~-~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
+++ ++ +.+. +...+ ++-.. ..+++.+++..+. .+. +++..+....+++.+.+.+.+.+.+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg---~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~ 351 (452)
T 2dgk_A 276 RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG---REG-YTKVQNASYQVAAYLADEIAKLGPYEF 351 (452)
T ss_dssp SSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHTTSSEEE
T ss_pred cCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh---HHH-HHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 643 33 3331 11111 11111 3344444444332 222 233333333344444444455553333
Q ss_pred e-e----ccceEEEEEecC------ChHHHHHHHHHCCceEee----cC--CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 395 V-R----GLGLIIGIEFDV------SATPVVDACRDSGLLVLT----AG--KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 395 ~-~----~~g~~~~i~~~~------~~~~~~~~l~~~Gv~v~~----~~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+ + ....++.+.++. +..++.+.|.++|+.+.. .. ...++|+++....|+++++++++.|++++
T Consensus 352 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~ 431 (452)
T 2dgk_A 352 ICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASL 431 (452)
T ss_dssp EEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3 2 345677777632 237899999999996542 11 12589999988889999999999999998
Q ss_pred HHhhhc
Q 012368 458 PVLDSN 463 (465)
Q Consensus 458 ~~~~~~ 463 (465)
+.+++.
T Consensus 432 ~~~~~~ 437 (452)
T 2dgk_A 432 KYLSDH 437 (452)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 877654
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-19 Score=182.39 Aligned_cols=330 Identities=12% Similarity=0.020 Sum_probs=193.0
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHhhcCCC-------eEEecCCHHHHHHHHHHHHHHHhhh---
Q 012368 114 HGDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFAD-------RVFFSNTGTEANEAAIKFARKFQRH--- 181 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~-------~v~~~~sG~eA~~~al~~a~~~t~~--- 181 (465)
..+|.+.+++.+.+......+..++ ...+.++++++++.++.+ ...+++||+||+..++.+++.....
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 3678999999887765322111221 122556778888888744 3456999999999998877643110
Q ss_pred -cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCC
Q 012368 182 -SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG 259 (465)
Q Consensus 182 -~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~ 259 (465)
.+.. ..++.|++.+++|..+...+...+.... . .+...+ .. -|+++|+++++++...++++.|++++
T Consensus 147 ~~G~~--~~~~~vi~~~~~h~s~~~~~~~~G~~~~-~---v~~~~~~~~----~d~~~l~~~i~~~t~~v~~~~~~n~t- 215 (502)
T 3hbx_A 147 AEGKP--VDKPNIVTGANVQVCWEKFARYFEVELK-E---VKLSEGYYV----MDPQQAVDMVDENTICVAAILGSTLN- 215 (502)
T ss_dssp HTTCC--CSCCEEEEETTCCHHHHHHHHHTTCEEE-E---ECCBTTBCS----CCHHHHHHHCCTTEEEEEEEBSCTTT-
T ss_pred hcCCC--CCCcEEEEcCCchHHHHHHHHHcCceeE-E---EecCCCcCc----CCHHHHHHHHhhCCEEEEEecCCCCC-
Confidence 0000 0123788887776554433322221111 0 111111 11 18999999998644334445555555
Q ss_pred CcccCCHHHHHHHHHHHHHh------CCEEEEeccccCCCC---CCc-cccccccCCcccEEEe--cccCCCccceeeEE
Q 012368 260 GIYSATKEFLQFLRDACDDA------GALLVFDEVQCGLGR---TGY-LWAHEHYGIFPDIMTL--AKPLAGGLPIGAAL 327 (465)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~gr---~g~-~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~ 327 (465)
|.+.+ +++|.++|+++ |++|++|++|.++.. .+. .+.+.. ...|++++ .|.+.++.++|+++
T Consensus 216 G~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~l~~p~g~G~~~ 289 (502)
T 3hbx_A 216 GEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKYGLVYAGIGWVI 289 (502)
T ss_dssp CCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCCSSCEEEE
T ss_pred CcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccccCCCCCeEEEE
Confidence 66655 99999999999 999999999986521 111 111111 13566654 48777778899887
Q ss_pred eC-HHHH-hhcc--CCCCcC-----C--CCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHcCCCce
Q 012368 328 VT-EKVA-SAIN--YGDHGS-----T--FAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLARNPHVK 393 (465)
Q Consensus 328 ~~-~~i~-~~~~--~~~~~~-----t--~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 393 (465)
.+ ++.+ +.+. +...+. + ++.+.....+..++++.+..+ ...++..++.+++.+.| .+.+.+.
T Consensus 290 ~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L----~~~~~~~ 365 (502)
T 3hbx_A 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGL----EKTERFN 365 (502)
T ss_dssp ESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTTCEE
T ss_pred EeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCEE
Confidence 75 3433 2221 111110 1 122222333344444443333 33444445555555444 4455333
Q ss_pred eee--ccceEEEEEec----CChHHHHHHHHHCCceEeecC------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 394 DVR--GLGLIIGIEFD----VSATPVVDACRDSGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 394 ~~~--~~g~~~~i~~~----~~~~~~~~~l~~~Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+. ....++.+.+. .+..++.+.|.++|+++.... ...++||++...+|+++++.+++.|++++++++
T Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~ 445 (502)
T 3hbx_A 366 IVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELD 445 (502)
T ss_dssp ECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 332 24567777763 234589999999999875321 125799999999999999999999999999887
Q ss_pred hcC
Q 012368 462 SNS 464 (465)
Q Consensus 462 ~~~ 464 (465)
+.+
T Consensus 446 ~~~ 448 (502)
T 3hbx_A 446 ELP 448 (502)
T ss_dssp TCC
T ss_pred hCc
Confidence 653
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=181.42 Aligned_cols=310 Identities=9% Similarity=-0.005 Sum_probs=186.3
Q ss_pred CCHHHHHHHHHHHhhcc---cc---c-CCCC--CHHHHHHHHHHHhhcCC---CeEEecCCH-HHHHHHHHHHHHHHhhh
Q 012368 115 GDADWIKAVVDQANVLT---HV---S-NMYY--SIPQIELAKRLVACSFA---DRVFFSNTG-TEANEAAIKFARKFQRH 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~---~~---~-~~~~--~~~~~~la~~l~~~~~~---~~v~~~~sG-~eA~~~al~~a~~~t~~ 181 (465)
.+|.|++|+.+.+.... .. . ..++ .+...+++++++++++. ++|++++|+ ++|+..++..+....
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~-- 91 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKG-- 91 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTT--
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCC--
Confidence 67999999998875420 00 0 0011 12367899999998873 489999998 999999887554210
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHh-hcCCCCeEEEEEcccCCCCC
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~a~vi~ep~~~~~G 260 (465)
.+++.|+...++|+. ...+... +...+ .+..+.. .+.|+++|++ ++++ ++++|+++..++.+|
T Consensus 92 ------~~g~~vi~~~~~~~~-~~~~~~~-g~~~~----v~~~~~~---~~~d~~~l~~~~i~~-~~k~v~~~~~~nptG 155 (360)
T 1w23_A 92 ------TIGNYVLTGSWSEKA-LKEAKLL-GETHI----AASTKAN---SYQSIPDFSEFQLNE-NDAYLHITSNNTIYG 155 (360)
T ss_dssp ------CEEEEEECSHHHHHH-HHHHHTT-SEEEE----EEECGGG---TSCSCCCGGGCCCCT-TEEEEEEESEETTTT
T ss_pred ------CcccEEEecchhHHH-HHHHHHh-CCeEE----eeccccc---CcCCccchHhhccCC-CCCEEEEeCCCCCcc
Confidence 023445544444332 1111111 11110 1111000 0136788888 7764 567777666566666
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccC
Q 012368 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY 338 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~ 338 (465)
.+.+ +++++||++||+||+|+.+... .....+ |++ +++|.++.+ ++|++++++++++.+.+
T Consensus 156 ~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~~ 218 (360)
T 1w23_A 156 TQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKVE 218 (360)
T ss_dssp EECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSCT-TCEEEEEEHHHHCSCCT
T ss_pred eecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCCC-CcEEEEEcHHHHhhccc
Confidence 6543 2334899999999999854321 112222 555 466999742 48999999998887754
Q ss_pred CC-----------CcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc-eee--e-cc-ceE
Q 012368 339 GD-----------HGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV-KDV--R-GL-GLI 401 (465)
Q Consensus 339 ~~-----------~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~--~-~~-g~~ 401 (465)
.. ...++ +.+..++.++.++++.+.+.+.++++.+....+++.+.+.+.+++.+ ... + .. +.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 298 (360)
T 1w23_A 219 QVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMN 298 (360)
T ss_dssp TCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSE
T ss_pred CCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcE
Confidence 32 11222 34667777777888765432123333333334444444444444422 211 2 12 447
Q ss_pred EEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 402 IGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 402 ~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+++.++. ...++.+.|.++||.+.++.. .+++|++++...+++++++++++|++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 299 VTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 8888742 346788889999999977532 367999999888999999999999988754
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-19 Score=180.23 Aligned_cols=298 Identities=15% Similarity=0.033 Sum_probs=177.7
Q ss_pred HHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-----c-eEEEEcCCcccCcccccccc
Q 012368 142 QIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-----T-EFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 142 ~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~-----~-~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.++.+++++.++. +.++|++||+||+..+++.++......-. .++ + .|++.++.|+... .+....
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~---~~G~~~~~~~~v~~s~~~h~s~~-~~~~~~ 209 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVK---TKGMAAVPKLVLFTSEQSHYSIK-KAGAAL 209 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHH---HHCGGGSCCEEEEEETTSCTHHH-HHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHh---hcCccccCCeEEEECCcchHHHH-HHHHHc
Confidence 55666788888873 48999999999999999998753210000 012 3 5666655554433 222221
Q ss_pred CCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCC-----CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGA 281 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~-----~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 281 (465)
+... ..+..+|.+ |+++|+++|++. .+++|++...++..|.+.+ +++|.++|++||+
T Consensus 210 g~g~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~ 276 (504)
T 2okj_A 210 GFGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNL 276 (504)
T ss_dssp TSCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTC
T ss_pred CCCc---------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCC
Confidence 1100 022233332 899999998631 4677777666566676655 9999999999999
Q ss_pred EEEEeccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeCH-HHHhhc----cCCC-CcCC--------
Q 012368 282 LLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTE-KVASAI----NYGD-HGST-------- 344 (465)
Q Consensus 282 llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~-~i~~~~----~~~~-~~~t-------- 344 (465)
++++|++|.++......+.....++ .+|+++++ |.+++++++|++++++ +++... .+.. ....
T Consensus 277 ~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 356 (504)
T 2okj_A 277 WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDT 356 (504)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCC
T ss_pred EEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCc
Confidence 9999999987643222111222333 57888875 9988778999999976 455431 1111 0111
Q ss_pred --------CCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee---eccceEEEEEe-cCC---
Q 012368 345 --------FAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV---RGLGLIIGIEF-DVS--- 409 (465)
Q Consensus 345 --------~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~g~~~~i~~-~~~--- 409 (465)
...+.+.+.+++.++..-.-+++.++..++.+++.+. +.+.+.+..+ .....++.+.. +..
T Consensus 357 ~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~----L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~ 432 (504)
T 2okj_A 357 GDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAK----IKNREEFEMVFNGEPEHTNVCFWYIPQSLRG 432 (504)
T ss_dssp GGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCTTEEESSSSCCSSSCEEEEECCGGGSS
T ss_pred ccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HhcCCCEEEEecCCCCeEEEEEEEeCccccc
Confidence 0123566666666654211123344444445554444 4444433322 13344444443 210
Q ss_pred --------------hHHHHHHHHHCCceEee-c--CC-CCEEEEecC-CCCcHHHHHHHHHHHHHHHHHh
Q 012368 410 --------------ATPVVDACRDSGLLVLT-A--GK-GNVVRLVPP-LIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 410 --------------~~~~~~~l~~~Gv~v~~-~--~~-~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..++.+.|.++|+++.. . .. .+++|+++. ..+|++||++++++|+++++++
T Consensus 433 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 433 VPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp CCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34688889999964432 2 11 157999985 7889999999999999887653
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=183.79 Aligned_cols=295 Identities=9% Similarity=0.008 Sum_probs=177.0
Q ss_pred HHHHHHHHHhhcCCC-eEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 142 QIELAKRLVACSFAD-RVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~~~~-~v~~~~sG~-eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
..++++++++.++.+ .++||+||+ .++..++..++.+. +++.||+.++.|+... ......+......+
T Consensus 135 ~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~---------~~~~vi~~~~~h~s~~-~~~~~~G~~~~~v~ 204 (456)
T 2z67_A 135 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY---------GSNVVIYPYASHKSPI-KAVSFVGMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH---------CCCEEEEECCCCHHHH-HHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc---------CCCEEEEECCCcHHHH-HHHHHcCCCceEEE
Confidence 567888999998833 399999999 56666777665432 2556888888665433 33222221111100
Q ss_pred CCCCCCCceEeeCCCHHHHHhhc-CC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 220 FEPVMPGVNFVEYGNIEATRKLI-QP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l-~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
..+...+.. .|+++|++++ +. .++.+|++...++..|.+.+ +++|.++|++||+++|+||+|.++. .
T Consensus 205 ~~~~~~~~~----~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~ 275 (456)
T 2z67_A 205 TVLDGDRVY----VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-N 275 (456)
T ss_dssp CEEETTEEE----CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-H
T ss_pred EeccCCCCC----cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-H
Confidence 000001111 3899999999 41 34555544433344566655 9999999999999999999987652 2
Q ss_pred Cc-cccccccCCcccEEEe--cccCCCccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHH
Q 012368 296 GY-LWAHEHYGIFPDIMTL--AKPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371 (465)
Q Consensus 296 g~-~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~ 371 (465)
|. ..........+|++++ +|.+++++++|++++ ++++++.+.+...+.....+.+++.+++..+....-++..++.
T Consensus 276 g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~ 355 (456)
T 2z67_A 276 YYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQ 355 (456)
T ss_dssp HHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111111115677765 698777899999999 5778777755433322222233344444433221124556777
Q ss_pred HHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe--cCChHHHHHHHHHCCc---eEe------e-----cCCCCEEEE
Q 012368 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACRDSGL---LVL------T-----AGKGNVVRL 435 (465)
Q Consensus 372 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~--~~~~~~~~~~l~~~Gv---~v~------~-----~~~~~~lRi 435 (465)
.++.+++.+.|+++....+. ....+. .++++.+ +....++.+.|.++|+ -+. . ....+++|+
T Consensus 356 ~~~~~~l~~~L~~~~~~~g~-~v~~~~-~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~ 433 (456)
T 2z67_A 356 KNSKKLLDELLNDLSKKTGG-KFLDVE-SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVM 433 (456)
T ss_dssp HHHHHHHHHHHHHHHHHSSC-CBCCCC-CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEE
T ss_pred HHHHHHHHHHHHhcccccCC-EecCCC-CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhh
Confidence 77888888888775321121 111222 4455555 3324678999999985 332 0 011368999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHH
Q 012368 436 VPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 436 ~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++++.+|++|+++++++|++++
T Consensus 434 s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 434 NAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp ECCTTCCHHHHHHHHHHHHTC-
T ss_pred hhhcCCCHHHHHHHHHHHHHHh
Confidence 9998999999999999998754
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=179.49 Aligned_cols=299 Identities=16% Similarity=0.103 Sum_probs=178.9
Q ss_pred HHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhh----hcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012368 142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQR----HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 142 ~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~----~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
..++.+++++.++ .+.++|++||+||+..|+++++.+.. ..+... .++..|++.++. |.....+....+...
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~-~~~~~vl~s~~~-h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRT-LPPLALFTSKEC-HYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGG-SCCEEEEEETTS-CTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccc-cCCeEEEECCCc-cHHHHHHHHHcCCCC
Confidence 5677888999888 45899999999999999999875321 000000 001256666555 444433332222100
Q ss_pred cCCCCCCCCCCceEeeCC-----CHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012368 216 YRSPFEPVMPGVNFVEYG-----NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
..+..+|.+ |+++|+++|++ .++++|+++..++..|.+.+ +++|.++|++||+++|+
T Consensus 228 ---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~v 294 (515)
T 2jis_A 228 ---------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHV 294 (515)
T ss_dssp ---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEE
T ss_pred ---------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEE
Confidence 022233332 79999999863 14677777776666777665 99999999999999999
Q ss_pred eccccCCCCCCccccccccCC-cccEEEe--cccCCCccceeeEEeCHH--HHhhc----cCCC-Cc----------CCC
Q 012368 286 DEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTEK--VASAI----NYGD-HG----------STF 345 (465)
Q Consensus 286 DEv~~g~gr~g~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~~--i~~~~----~~~~-~~----------~t~ 345 (465)
|++|.++......+.....++ .+|++++ +|++++++++|+++++++ +++.. .+.. .. +++
T Consensus 295 D~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 374 (515)
T 2jis_A 295 DAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK 374 (515)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGG
T ss_pred ehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCC
Confidence 999987644333222223344 6798887 699987788999999866 65531 1110 00 000
Q ss_pred ------CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccceEEEEEe-cC------Ch-
Q 012368 346 ------AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLGLIIGIEF-DV------SA- 410 (465)
Q Consensus 346 ------~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~i~~-~~------~~- 410 (465)
....+.+.+++.++....-+++.++..++.+++.+.|+ +.+.+..+. .....+.+.+ +. +.
T Consensus 375 ~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~----~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~ 450 (515)
T 2jis_A 375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMK----KREGFELVMEPEFVNVCFWFVPPSLRGKQESP 450 (515)
T ss_dssp CSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TSTTEEESSCCSSSEEEEEECCGGGTTCTTST
T ss_pred CCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cCCCEEEeCCCCeeEEEEEEeCccccccccch
Confidence 11244444555554321113344555555555555554 444332221 2223344433 11 11
Q ss_pred ----------HHHHHHHHHCCceEee----cCCCCEEEEec-CCCCcHHHHHHHHHHHHHHHHH
Q 012368 411 ----------TPVVDACRDSGLLVLT----AGKGNVVRLVP-PLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 411 ----------~~~~~~l~~~Gv~v~~----~~~~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..+.+.|.+.|+.+.. .+..+++|+++ +..+|++|+++++++|++++++
T Consensus 451 ~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 451 DYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp THHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1256778888976532 12236899999 8899999999999999987654
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-19 Score=178.49 Aligned_cols=166 Identities=20% Similarity=0.171 Sum_probs=119.4
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+..++++...+|+++|+++++.+..++++||++|+..+++.+. .+++.||+.+++|++.........
T Consensus 75 ~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~-----------~~Gd~Vi~~~~~y~~~~~~~~~~~- 142 (430)
T 3ri6_A 75 VYSRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLA-----------RAGDSVVTTDRLFGHTLSLFQKTL- 142 (430)
T ss_dssp -----CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHTHH-
T ss_pred cccCCCCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEcCCCchhHHHHHHHHH-
Confidence 34567788899999999999997788889999999999998664 268999999999987654221100
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
......+.+++.+|+++|++++++ ++++|+++..++..|.+.+ +++|.++|++||++||+||+|...
T Consensus 143 --------~~~G~~~~~v~~~d~~~l~~ai~~-~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~~ 209 (430)
T 3ri6_A 143 --------PSFGIEVRFVDVMDSLAVEHACDE-TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTPP 209 (430)
T ss_dssp --------HHTTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSCT
T ss_pred --------HHcCCEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 011234566777899999999975 6788888877777777665 899999999999999999998732
Q ss_pred CCCCccccccccCCcccEEEecccCCC-ccce-eeEE
Q 012368 293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAAL 327 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~ 327 (465)
.......++....+.+++|+++| |..+ |+++
T Consensus 210 ----~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 210 ----YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp ----TTCCGGGGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred ----ccCChHHcCCEEEEECCcccccCCCCceEEEEE
Confidence 11122234554445578899987 5444 4444
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=179.50 Aligned_cols=302 Identities=12% Similarity=0.008 Sum_probs=179.8
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCC--HHHHHHHHHHHhhcCC---CeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYS--IPQIELAKRLVACSFA---DRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKE 188 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~~---~~v~~-~~sG~eA~~~al~~a~~~t~~~~~~~~~ 188 (465)
.+|+|++|+.+...........++. +...++++++++.++. ++|++ ++||++|+..+++.+. +
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~---~-------- 119 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI---D-------- 119 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC---S--------
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc---C--------
Confidence 6788998887631111010112221 2367899999999872 48998 9999999999998764 1
Q ss_pred CCceEEEEcCCcccCccc--cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCH
Q 012368 189 PATEFVSFTNSFHGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
++ ++.....+|+.... +.... ....+..++.++-......+++ ++++|++...++.+|.+.+
T Consensus 120 ~g--v~~v~~~~~~~~~~~~~~~~~-----------~g~~~~~v~~~~g~~~~~~i~~-~~~~v~~~~~~nptG~~~~-- 183 (398)
T 2fyf_A 120 KR--SLHLTYGEFSAKFASAVSKNP-----------FVGEPIIITSDPGSAPEPQTDP-SVDVIAWAHNETSTGVAVA-- 183 (398)
T ss_dssp SC--EEEEECSHHHHHHHHHHHHCT-----------TSCCCEEEECCTTCCCCCCCCT-TCSEEEEESEETTTTEECC--
T ss_pred CC--eEEEeCCHHHHHHHHHHHHhC-----------CCCceEEEecCCCCCCCccccC-CCCEEEEeCcCCCcceecc--
Confidence 33 33336666654221 11110 0011122222100000001333 4556655555555566554
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccC------
Q 012368 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY------ 338 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~------ 338 (465)
+++|.++ +|+++|+||+|+.+... .... .+|+++ ++|.++++.++|++++++++++.+..
T Consensus 184 --~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~ 251 (398)
T 2fyf_A 184 --VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGR 251 (398)
T ss_dssp --CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTC
T ss_pred --hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCC
Confidence 3444444 89999999999854321 1111 257765 45999865468999999998776521
Q ss_pred ----CC----------CcCC-CCChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHcCCCceee---e
Q 012368 339 ----GD----------HGST-FAGSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLARNPHVKDV---R 396 (465)
Q Consensus 339 ----~~----------~~~t-~~~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~ 396 (465)
.. ...+ ++.+..+++++.++|+.+.+. ...++.+++.+++.+.|++ .+.+... +
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~ 327 (398)
T 2fyf_A 252 WVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE----RPYTTPFVTDP 327 (398)
T ss_dssp CCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH----STTEEESCCSG
T ss_pred CCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH----cCCceeccCCh
Confidence 00 0122 345667777888888765433 3344455555555555543 4322222 1
Q ss_pred -ccce-EEEEEec--CChHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 397 -GLGL-IIGIEFD--VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 397 -~~g~-~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.+. ++++.++ .+..++.+.|.++||.+.++.. ++++|++++...|++|+++++++|++++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 328 GLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp GGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred hhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 1234 7888873 3577899999999999976421 378999999888999999999999998764
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-19 Score=178.50 Aligned_cols=285 Identities=16% Similarity=0.089 Sum_probs=181.8
Q ss_pred CCHHHHHHHHHHHhhc---cc-ccCCCCCHHHHHHHHHHHhhcCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012368 115 GDADWIKAVVDQANVL---TH-VSNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~---~~-~~~~~~~~~~~~la~~l~~~~~~~~v~~---~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
++++|.+|+.++.... .. ....|+.....++++++++.++.+...+ ++||++|+..+++.+.
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~----------- 104 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL----------- 104 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC-----------
Confidence 5678888887753211 11 1223556778899999999998665444 5699999999988554
Q ss_pred CCCceEEEEc-CCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCc
Q 012368 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGI 261 (465)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~ 261 (465)
.++++|++.+ +.|.+ +...+.+++. +...+......+.+++. .|+++|++++++ ++++|++++..++.+.
T Consensus 105 ~~Gd~Vl~~~~~~y~~-~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~ 180 (431)
T 3ht4_A 105 RPGDELLYITGKPYDT-LEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATR 180 (431)
T ss_dssp CTTCEEEECSSSCCTT-HHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSS
T ss_pred CCCCEEEEeCCCCchh-HHHHHhhccc--ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCC
Confidence 1688999998 66644 4433333221 11112222334445555 389999999975 6788888864433333
Q ss_pred ccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc--cceeeEEeCHHHHhhcc
Q 012368 262 YSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG--LPIGAALVTEKVASAIN 337 (465)
Q Consensus 262 ~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G--~~iG~v~~~~~i~~~~~ 337 (465)
...+.+.+++|+++|++ ||++||+||+|.++....... .++....+.+++|.++|| .+.|++++++++++.+.
T Consensus 181 ~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 257 (431)
T 3ht4_A 181 PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACA 257 (431)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHH
Confidence 45688889999999999 999999999998775433322 224434445789999874 67799999999888774
Q ss_pred CC----CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CCCceeeeccceEEEEEec--CCh
Q 012368 338 YG----DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NPHVKDVRGLGLIIGIEFD--VSA 410 (465)
Q Consensus 338 ~~----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~i~~~--~~~ 410 (465)
.. ..+.+.+.++..+.++...++.+ +...++..++..++.+.|+++... +|. ...++.+.++.+.++ ...
T Consensus 258 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~~~~~~ 334 (431)
T 3ht4_A 258 YRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFDDKDRM 334 (431)
T ss_dssp HHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECCCHHHH
T ss_pred HHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeCCHHHH
Confidence 31 12222222222233344455433 456677788888888888776211 121 123345568888884 234
Q ss_pred HHHHHHHHHC
Q 012368 411 TPVVDACRDS 420 (465)
Q Consensus 411 ~~~~~~l~~~ 420 (465)
.++++.|.+.
T Consensus 335 ~~~~~~l~~~ 344 (431)
T 3ht4_A 335 IAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 5688888875
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-19 Score=180.13 Aligned_cols=313 Identities=15% Similarity=0.096 Sum_probs=187.1
Q ss_pred CCHHHHHHHHHHHhhcc-ccc---CCC-CCHH----HHHHHHHHHhhcCCC-----eEEecCCHHHHHHHHHHHHHHHhh
Q 012368 115 GDADWIKAVVDQANVLT-HVS---NMY-YSIP----QIELAKRLVACSFAD-----RVFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~-~~~---~~~-~~~~----~~~la~~l~~~~~~~-----~v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.+|.|++|+.+.+.... .++ ..+ ..+. +..++++++++++.+ .-+.++||++|+..++..+.
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all---- 131 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV---- 131 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhc----
Confidence 57999999998876521 011 111 2222 445558888888833 22445556699988887654
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC--------CCHHHHHhhcCCCCeEEEEE
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--------GNIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~~le~~l~~~~~a~vi~ 252 (465)
.++|+|++.++.|+++.......... ... + ....+..+++ -|+++|+++++..++++|++
T Consensus 132 -------~pGD~Vl~~~~~~~~~~~~~~~~~~~-~v~--~--~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~ 199 (483)
T 1rv3_A 132 -------EPHGRIMGLDLPDGGHLTHGFMTDKK-KIS--A--TSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 199 (483)
T ss_dssp -------CTTCEEEEECGGGTCCGGGCCBCSSC-BCS--H--HHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred -------CCCCEEEEecCccCcCcchhhhhccc-Ccc--c--ccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE
Confidence 26899999999887765322110000 000 0 0000111111 28999999997235667777
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCc-cccccccCCcccEEE--ecccCCCccceeeEEe
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGY-LWAHEHYGIFPDIMT--LAKPLAGGLPIGAALV 328 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~-~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~ 328 (465)
..++.+ .+.+ +++|+++|++||++||+|++|. |+...|. ...+. ..|+++ ++|+|+ |+|.|++++
T Consensus 200 -~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~K~l~-GprgG~i~~ 268 (483)
T 1rv3_A 200 -GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLR-GCRAGMIFY 268 (483)
T ss_dssp -CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGC-CCSCEEEEE
T ss_pred -eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCcccCC-CCCceEEEE
Confidence 333333 3433 8999999999999999999976 3211121 01111 246664 569985 568899998
Q ss_pred CHH---------------HHhhccCCCCcC-CCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcC
Q 012368 329 TEK---------------VASAINYGDHGS-TFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 329 ~~~---------------i~~~~~~~~~~~-t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
+++ +.+.+....... ..+.+...+++..++++.+.+ +++.+++.++.+++.+.|.+.
T Consensus 269 ~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 344 (483)
T 1rv3_A 269 RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL---- 344 (483)
T ss_dssp ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred cchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 874 222222110111 112334455555667776543 345566666777776666553
Q ss_pred CCceeeec-c-ceEEEEEec---CChHHHHHHHHHCCceEe----ecC----CCCEEEEecCCCCc----HHHHHHHHHH
Q 012368 390 PHVKDVRG-L-GLIIGIEFD---VSATPVVDACRDSGLLVL----TAG----KGNVVRLVPPLIIS----EQELDQAVEI 452 (465)
Q Consensus 390 ~~~~~~~~-~-g~~~~i~~~---~~~~~~~~~l~~~Gv~v~----~~~----~~~~lRi~~~~~~t----~e~i~~~l~~ 452 (465)
+. ..+.+ . ..++++.+. .+..++.+.|.+.||.+. |+. ..+.+||+++..+| ++|+++++++
T Consensus 345 g~-~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~ 423 (483)
T 1rv3_A 345 GY-KIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHF 423 (483)
T ss_dssp TC-EEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred CC-EeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHH
Confidence 32 11222 1 245667763 356778888889999998 642 13689999886666 9999999999
Q ss_pred HHHHHHH
Q 012368 453 LCKTLPV 459 (465)
Q Consensus 453 l~~~l~~ 459 (465)
|.++++.
T Consensus 424 l~~~l~~ 430 (483)
T 1rv3_A 424 IHRGIEL 430 (483)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998876
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=171.38 Aligned_cols=310 Identities=14% Similarity=0.092 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH-HhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL-VACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l-~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ 192 (465)
.+|++++++.+.++..... ...+...++++++ +++++ .+.+++++||++|+..+++.+. . .++|+
T Consensus 14 ~~~~i~~a~~~~~~~~~~~---~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~--~--------~~Gd~ 80 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYT---NYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKK--R--------KKGKY 80 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCS---SSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHS--C--------TTCCE
T ss_pred CcHHHHHHHHHHHHcCCcc---cCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCE
Confidence 4578899999988764221 1245678999999 99999 8899999999999999988651 1 16899
Q ss_pred EEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhc-CCC-CeEEEEEcccCCCCCcccCCHHHHH
Q 012368 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI-QPG-KTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 193 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l-~~~-~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
||+.+++|++....+...+..+.+. +..++.. .-|++++++++ +++ ++++|+ |+++ .|...+ ++
T Consensus 81 Vi~~~~~~~~~~~~~~~~G~~~~~v----~~~~~~~---~~d~~~l~~~i~~~~~~tk~v~--~~~~-~G~~~~----~~ 146 (377)
T 3ju7_A 81 ALMPSFTFPATPLAAIWCGLEPYFI----DISIDDW---YMDKTVLWDKIEELKEEVAIVV--PYAT-FGSWMN----LE 146 (377)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEEE----CBCTTTC---SBCHHHHHHHHHHHGGGEEEEC--CBCG-GGBCCC----CH
T ss_pred EEECCCCcHHHHHHHHHcCCEEEEE----ecCCccC---CcCHHHHHHHHhcCCCCceEEE--EECC-CCCccC----HH
Confidence 9999999987665443333222211 1111100 01899999988 332 266666 4443 354444 78
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCcccccccc-CCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCCC----
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY-GIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYGD---- 340 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~-~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~~---- 340 (465)
+|.++|+ ||++||+|++|+ +|.. +..... +...|+.++| |.+++| ..|+++.+ +++.+.+....
T Consensus 147 ~i~~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~ 220 (377)
T 3ju7_A 147 EYEELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGF 220 (377)
T ss_dssp HHHHHHH-TTCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTB
T ss_pred HHHHHHh-cCCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCC
Confidence 9999999 999999999997 4321 111112 1123555544 999875 56777764 56665543211
Q ss_pred --------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CCCcee--eeccceEEEEEecC-
Q 012368 341 --------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NPHVKD--VRGLGLIIGIEFDV- 408 (465)
Q Consensus 341 --------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~--~~~~g~~~~i~~~~- 408 (465)
.+..+..+++.++.+++.++.+ +...++.+++.+++.+.|.++..- .+.... ......++.+.++.
T Consensus 221 ~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3ju7_A 221 DTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEE 298 (377)
T ss_dssp CTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTT
T ss_pred CCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCCh
Confidence 1234556777777777777643 445666677777777776653100 111100 01112233444432
Q ss_pred -ChHHHHHHHHHCCceEeecCC------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 409 -SATPVVDACRDSGLLVLTAGK------------------------GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 409 -~~~~~~~~l~~~Gv~v~~~~~------------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
...++.+.|.++||.+..... .+.+|+.+....|++|++.+++.|++++..
T Consensus 299 ~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 299 VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 367899999999998764210 135888888888999999999999887754
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=173.37 Aligned_cols=315 Identities=14% Similarity=0.105 Sum_probs=177.6
Q ss_pred CCHHHHHHHHHHHhh-ccccc--CC--CCCHH----HHHHHHHHHhhcCCCe-----EEecCCHHHHHHHHHHHHHHHhh
Q 012368 115 GDADWIKAVVDQANV-LTHVS--NM--YYSIP----QIELAKRLVACSFADR-----VFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~--~~--~~~~~----~~~la~~l~~~~~~~~-----v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.+|+|++|+...+.. +..++ .. ...+. +...+++++++++.+. .++++||++||..++..+.
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~---- 141 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL---- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc----
Confidence 579999999887754 21111 11 11121 2234488999998443 4567799999999998664
Q ss_pred hcCCCCCCCCceEEEEcCCcccCcccc-------ccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGA-------LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.++|+|++.++.|.|+.... ...++.. +.....+..+... ..|+++|+++++..++++|++.
T Consensus 142 -------~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~-~~~~~~~vd~~~~---~iD~d~le~~l~~~~~klIi~~ 210 (490)
T 2a7v_A 142 -------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF-FESMPYKLNPKTG---LIDYNQLALTARLFRPRLIIAG 210 (490)
T ss_dssp -------CSCEECCC--------------------------------CCBCTTTC---SBCHHHHHHHHHHHCCSEEEEC
T ss_pred -------CCCCEecccCccccccccchhhhcchhHHHcCCe-EEEEecccccccC---CcCHHHHHHHHhhcCCcEEEEc
Confidence 27999999998875543211 1122211 0000001111110 1389999999863234566654
Q ss_pred -ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCc-cccccccCCcccEE--EecccCCCccceeeEEe
Q 012368 254 -PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGY-LWAHEHYGIFPDIM--TLAKPLAGGLPIGAALV 328 (465)
Q Consensus 254 -p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~-~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~ 328 (465)
|.++. ..+ +++|+++|++||++|++|++|. |+...|. ...+. + .|++ +++|+++ |.+.|++++
T Consensus 211 ~s~~~~---~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~--aDiv~~S~hK~l~-Gp~GG~i~~ 278 (490)
T 2a7v_A 211 TSAYAR---LID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--H--ADIVTTTTHKTLR-GARSGLIFY 278 (490)
T ss_dssp CSSCCS---CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--T--CSEEEEESSGGGC-SCSCEEEEE
T ss_pred CCCCCC---ccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--C--CCEEEECCcccCc-cccchheee
Confidence 34432 223 8999999999999999999975 3211221 11111 2 4665 5679995 457799988
Q ss_pred CHH---------------HHhhccCCCCcCCCC-ChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcC
Q 012368 329 TEK---------------VASAINYGDHGSTFA-GSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 329 ~~~---------------i~~~~~~~~~~~t~~-~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
+++ +.+.++.....++.+ .++..++|..+++..... +++.+++.++.+++++.|.+. .+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~--G~ 356 (490)
T 2a7v_A 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GY 356 (490)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred ccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc--Cc
Confidence 764 223333211222222 244445555556655433 456677788888888888763 22
Q ss_pred CCceeeeccceEEEEEec---CChHHHHHHHHHCCceEeec----C----CCCEEEEecC----CCCcHHHHHHHHHHHH
Q 012368 390 PHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTA----G----KGNVVRLVPP----LIISEQELDQAVEILC 454 (465)
Q Consensus 390 ~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~----~----~~~~lRi~~~----~~~t~e~i~~~l~~l~ 454 (465)
..+.. .....++++++. .+..++.+.|.+.||.+... . .+..+|+..+ ..++++|++++++.|.
T Consensus 357 ~v~~~-~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~ 435 (490)
T 2a7v_A 357 SLVSG-GTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFID 435 (490)
T ss_dssp EEGGG-SCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred EEecC-CCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHH
Confidence 21110 112356777763 24677888888999998742 1 1356999654 3578999999999999
Q ss_pred HHHHH
Q 012368 455 KTLPV 459 (465)
Q Consensus 455 ~~l~~ 459 (465)
+++..
T Consensus 436 ~~l~~ 440 (490)
T 2a7v_A 436 EGVNI 440 (490)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-17 Score=169.27 Aligned_cols=299 Identities=15% Similarity=0.049 Sum_probs=172.6
Q ss_pred HHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHh----hhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 142 QIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQ----RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 142 ~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t----~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+.++++++++.++. +.++|++||++|+..|+.+++... ...+-. ..+++.|++.+.+|+... .+....+.
T Consensus 137 e~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~-~~~~~~v~~s~~~H~s~~-~~~~~~g~ 214 (511)
T 3vp6_A 137 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA-AVPKLVLFTSEQSHYSIK-KAGAALGF 214 (511)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG-GSCCEEEEEETTSCTHHH-HHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc-cCCCeEEEECCCchHHHH-HHHHHcCC
Confidence 56677778888772 489999999999999999887531 000000 002455666666554443 33322221
Q ss_pred CCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCC-----CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE
Q 012368 214 EHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALL 283 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~-----~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ll 283 (465)
.. ..+..+|.+ |+++|+++|++. .+.+|+++..++..|.+.+ +++|.++|++||+++
T Consensus 215 g~---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~l 281 (511)
T 3vp6_A 215 GT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWL 281 (511)
T ss_dssp CG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEE
T ss_pred CC---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCCEE
Confidence 00 012222322 899999999632 2667777766666677655 999999999999999
Q ss_pred EEeccccCCCCCCccccccccCC-cccEEEe--cccCCCccceeeEEeCH-HHHhhc-c--CCCC---c-----------
Q 012368 284 VFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTE-KVASAI-N--YGDH---G----------- 342 (465)
Q Consensus 284 I~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~-~i~~~~-~--~~~~---~----------- 342 (465)
++|++|.+.......+.....++ ..|++++ +|++++...+|+++.++ +++... . +... .
T Consensus 282 hvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 361 (511)
T 3vp6_A 282 HVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGD 361 (511)
T ss_dssp EEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGG
T ss_pred EEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccC
Confidence 99999986422111111111232 4577765 59998777788888764 344332 1 1100 0
Q ss_pred CCC----CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee---ccceEEEEEe-cCC-----
Q 012368 343 STF----AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR---GLGLIIGIEF-DVS----- 409 (465)
Q Consensus 343 ~t~----~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~i~~-~~~----- 409 (465)
.+. ....+.+.+++..+..-.-+++.++..++.+++++.|+ +.|.+..+. ....++.+.+ +..
T Consensus 362 ~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~----~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~ 437 (511)
T 3vp6_A 362 KAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIK----NREEFEMVFNGEPEHTNVCFWYIPQSLRGVP 437 (511)
T ss_dssp GSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SCTTEEESSSSCCSSSCEEEEECCGGGSSCC
T ss_pred CCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cCCCEEEEecCCCCeEEEEEEEeCccccccc
Confidence 000 11234444444433211113455555566666655554 444333222 3344455543 110
Q ss_pred ------------hHHHHHHHHHCCceEeec---CC-CCEEEEec-CCCCcHHHHHHHHHHHHHHHHH
Q 012368 410 ------------ATPVVDACRDSGLLVLTA---GK-GNVVRLVP-PLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 410 ------------~~~~~~~l~~~Gv~v~~~---~~-~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..++.+.|+++|+++... +. .+++|+++ +..++++||+.+++.|++.-+.
T Consensus 438 ~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 438 DSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 235888899999765431 11 14699988 6788999999999999876544
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-17 Score=167.91 Aligned_cols=324 Identities=12% Similarity=0.033 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhcccccCCC--CCHHHHHHHHHHHhhcCCC-----------eEEecCCHHHHHHHHHHHHHHHh-hhcCC
Q 012368 119 WIKAVVDQANVLTHVSNMY--YSIPQIELAKRLVACSFAD-----------RVFFSNTGTEANEAAIKFARKFQ-RHSNP 184 (465)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~~~-----------~v~~~~sG~eA~~~al~~a~~~t-~~~~~ 184 (465)
+.+++...+......+... ....+.++++++++.++.+ .+++|+|||||+..++..++... ....+
T Consensus 90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~ 169 (486)
T 1js3_A 90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169 (486)
T ss_dssp HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5566666654322111111 1122556777788887732 58999999999999998876431 10000
Q ss_pred CCCCCC--------ce--EEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC------eE
Q 012368 185 DSKEPA--------TE--FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK------TA 248 (465)
Q Consensus 185 ~~~~~~--------~~--ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~------~a 248 (465)
. .+ ++ |++.+++|+.+...+...+.... . .+...+.. -|+++|+++|+++. +.
T Consensus 170 ~---~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~-~---v~~d~~~~----~d~~~L~~~i~~~~~~g~~p~~ 238 (486)
T 1js3_A 170 A---SPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLK-A---IPSDGKFA----MRASALQEALERDKAAGLIPFF 238 (486)
T ss_dssp H---STTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEE-E---ECCCTTSC----CCHHHHHHHHHHHHHTTCEEEE
T ss_pred c---CccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceE-E---eecCCCCC----CCHHHHHHHHHHHHhCCCCceE
Confidence 0 01 23 56677776654433322221111 1 11111111 28999999996322 23
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC-cccEEEe--cccCCCccceee
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGA 325 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~ 325 (465)
++++.|. +..|.+.+ +++|.++|++||+++++|++|.++......+.....++ ..|.+++ +|.+++++++|+
T Consensus 239 vv~~~~~-n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~ 313 (486)
T 1js3_A 239 VVATLGT-TSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSA 313 (486)
T ss_dssp EEEEBSC-TTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEE
T ss_pred EEEeCCC-CCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEE
Confidence 4444444 44455544 99999999999999999999976422111111101122 3577765 599887789999
Q ss_pred EEeCHH--HHhhccC--CCC-c-----------------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 012368 326 ALVTEK--VASAINY--GDH-G-----------------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLK 383 (465)
Q Consensus 326 v~~~~~--i~~~~~~--~~~-~-----------------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~ 383 (465)
++++++ +.+.+.. ... . .+.....+.+.+++..+..-.-+++.++..++.+++.+.|+
T Consensus 314 l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~ 393 (486)
T 1js3_A 314 MWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVL 393 (486)
T ss_dssp EEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998754 2444421 000 0 00112344444444443211113344455555555555554
Q ss_pred HHHHcCCCceee-eccceEEEEEecCC---hHHHHHHHHHCCceEeec---CCCCEEEEec-CCCCcHHHHHHHHHHHHH
Q 012368 384 QKLARNPHVKDV-RGLGLIIGIEFDVS---ATPVVDACRDSGLLVLTA---GKGNVVRLVP-PLIISEQELDQAVEILCK 455 (465)
Q Consensus 384 ~~~~~~~~~~~~-~~~g~~~~i~~~~~---~~~~~~~l~~~Gv~v~~~---~~~~~lRi~~-~~~~t~e~i~~~l~~l~~ 455 (465)
+ .|.+..+ +..+.++.+.+... ..++.+.|.++|+++... +...++|+++ +...|++++++++++|++
T Consensus 394 ~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 469 (486)
T 1js3_A 394 Q----DPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469 (486)
T ss_dssp H----CTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred c----CCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4 4433322 23455666666321 467888898888654322 1126799986 455789999999999999
Q ss_pred HHHHhhh
Q 012368 456 TLPVLDS 462 (465)
Q Consensus 456 ~l~~~~~ 462 (465)
+++++.+
T Consensus 470 ~~~~~~~ 476 (486)
T 1js3_A 470 LAAELLA 476 (486)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9887654
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-16 Score=161.68 Aligned_cols=304 Identities=14% Similarity=0.086 Sum_probs=173.6
Q ss_pred HHHHHHHHHhhcCC------------CeEEecCCHHHHHHHHHHHHHHHhhhc----CCCC----CCCCceEEEEcCCcc
Q 012368 142 QIELAKRLVACSFA------------DRVFFSNTGTEANEAAIKFARKFQRHS----NPDS----KEPATEFVSFTNSFH 201 (465)
Q Consensus 142 ~~~la~~l~~~~~~------------~~v~~~~sG~eA~~~al~~a~~~t~~~----~~~~----~~~~~~ii~~~~~yh 201 (465)
+.++.+++++.++. ...+|++|||+||..|+.+++...... ++.- ..++..|++.+.+++
T Consensus 120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~ 199 (481)
T 4e1o_A 120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHS 199 (481)
T ss_dssp HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCH
T ss_pred HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchH
Confidence 55666777777762 267899999999999999988643100 0000 002445555555544
Q ss_pred cCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-----CeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 202 GRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 202 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
. ...+..+.+..... .+...+.. -|+++|+++|++. .+.+|++...+++.|.+.+ +++|.++|
T Consensus 200 s-~~~~~~~~g~~~~~---v~~~~~~~----~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~la 267 (481)
T 4e1o_A 200 S-VEKAGLISLVKMKF---LPVDDNFS----LRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGPIC 267 (481)
T ss_dssp H-HHHHHHHHTCEEEE---ECCCTTSC----CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHH
T ss_pred H-HHHHHHhCCCceEE---EEcCCCCc----CCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHHHH
Confidence 4 33333333221111 11111111 2899999999622 1455555555556676655 99999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCC-cccEEEe--cccCCCccceeeEEeCH-HHH-hhccCC--C--C---c--
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTE-KVA-SAINYG--D--H---G-- 342 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~-~i~-~~~~~~--~--~---~-- 342 (465)
++||+++++|++|.+....+..+.....++ ..|.+++ .|++++....|+++.++ +.. +.+... . . .
T Consensus 268 ~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~ 347 (481)
T 4e1o_A 268 AREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVA 347 (481)
T ss_dssp HHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTS
T ss_pred HHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCC
Confidence 999999999999976422222111111233 3587776 59998777778887764 332 222110 0 0 0
Q ss_pred ---------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEecC---C
Q 012368 343 ---------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFDV---S 409 (465)
Q Consensus 343 ---------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~---~ 409 (465)
.+.....+.+.+++..+..-.-+++.++..++.+++++.| .+.|.+..+ +....++++.+.. .
T Consensus 348 ~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L----~~~~g~~~~~~~~~~~v~f~~~~~~~~ 423 (481)
T 4e1o_A 348 TDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLV----RNDPSFEIPAKRHLGLVVFRLKGPNSL 423 (481)
T ss_dssp CCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCTTEECCSCCCSSEEEEEESSCHHH
T ss_pred CCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----hcCCCeEEecCCceeEEEEEeCCchHH
Confidence 0111134444554444432111334455555555555555 444433222 2334566666632 2
Q ss_pred hHHHHHHHHHCCce-EeecC--CCCEEEEecC-CCCcHHHHHHHHHHHHHHHHHhh
Q 012368 410 ATPVVDACRDSGLL-VLTAG--KGNVVRLVPP-LIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~-v~~~~--~~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..++.+.|.++|++ +.+.. ...++|+++. ...|++||++++++|+++++++.
T Consensus 424 ~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 424 TENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp HHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46788889988854 44321 1257999865 44589999999999999988764
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=162.63 Aligned_cols=304 Identities=11% Similarity=-0.003 Sum_probs=171.4
Q ss_pred HHHHHHHHHhhcCCC-----------eEEecCCHHHHHHHHHHHHHHHhhhc----CCCC----CCCCceEEEEcCCccc
Q 012368 142 QIELAKRLVACSFAD-----------RVFFSNTGTEANEAAIKFARKFQRHS----NPDS----KEPATEFVSFTNSFHG 202 (465)
Q Consensus 142 ~~~la~~l~~~~~~~-----------~v~~~~sG~eA~~~al~~a~~~t~~~----~~~~----~~~~~~ii~~~~~yhg 202 (465)
+.++.+++++.+|.+ ..+||+|||+||..|+.+++...... ++.- ..++..|++.+.+++
T Consensus 115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~- 193 (475)
T 3k40_A 115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHS- 193 (475)
T ss_dssp HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCH-
T ss_pred HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchH-
Confidence 556667778887732 68999999999999999987543100 0000 001234555555544
Q ss_pred CccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-----CeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 012368 203 RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 277 (465)
+...+....+..... .+...+. -|+++|+++|++. .+.+|++....++.|.+.+ +++|.++|+
T Consensus 194 s~~~~~~~~g~~~~~---v~~d~~~-----~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la~ 261 (475)
T 3k40_A 194 SVERAGLLGGVKLRS---VQSENHR-----MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVGN 261 (475)
T ss_dssp HHHHHHHHHTCEEEE---ECCBTTB-----CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHH
T ss_pred HHHHHHHHcCCceEE---EECCCCC-----cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHHH
Confidence 443333333221111 1111111 2899999999632 1444555544555666655 999999999
Q ss_pred HhCCEEEEeccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeCHH-HH-hhccC--CCC-----cC--
Q 012368 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTEK-VA-SAINY--GDH-----GS-- 343 (465)
Q Consensus 278 ~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~~-i~-~~~~~--~~~-----~~-- 343 (465)
+||+++++|++|.+....+..+.....++ ..|.++++ |++++...+|+++.++. .+ +.+.. ... ..
T Consensus 262 ~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~ 341 (475)
T 3k40_A 262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP 341 (475)
T ss_dssp HTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------------
T ss_pred HhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCC
Confidence 99999999999875322221111111232 35887764 99987778888887653 32 22210 000 00
Q ss_pred -----CC-CChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEecC---Ch
Q 012368 344 -----TF-AGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFDV---SA 410 (465)
Q Consensus 344 -----t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~---~~ 410 (465)
+. .+-++...+..++|+.+.. +++.++..++.+++++.|++ .|.+..+ +....++.+.+.. ..
T Consensus 342 ~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~g~~l~~~~~~~iv~f~~~~~~~~~ 417 (475)
T 3k40_A 342 DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVA----DSRFELAAEINMGLVCFRLKGSNERN 417 (475)
T ss_dssp -------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEESSCCBTTEEEEEESSCHHHH
T ss_pred CcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEecCCceEEEEEEeCCchHHH
Confidence 00 1111222333344443322 34455555666666666554 3433222 2334556666632 24
Q ss_pred HHHHHHHHHCCceE-eecC--CCCEEEEecC-CCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 411 TPVVDACRDSGLLV-LTAG--KGNVVRLVPP-LIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 411 ~~~~~~l~~~Gv~v-~~~~--~~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.++.+.|.++|.++ .+.. ...++|+++. ..+|++||++++++|+++++++.+
T Consensus 418 ~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 418 EALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 67888899888754 3321 1257999865 446899999999999999987754
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=161.60 Aligned_cols=281 Identities=16% Similarity=0.096 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhhcCCC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc----ccCCC
Q 012368 141 PQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA----LTSKE 214 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~--~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~----~~~~~ 214 (465)
...+++++++++++.+ ++.+++|++.+++.++.+++ .. ++++||+.+++|+.+...... .+...
T Consensus 109 ~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~---------~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ET---------GRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HH---------TCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cC---------CCCEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 3678899999998843 56899999944444433322 11 588999999888665432211 11111
Q ss_pred CcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc-ccCCC
Q 012368 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV-QCGLG 293 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv-~~g~g 293 (465)
.. .+. .+.. -|+++ +++ ++++|++... +..|.+.+ +++|.++|++||+++|+|-. ++ +|
T Consensus 179 ~~----v~~-~~~~----~d~~~----i~~-~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a-~g 238 (438)
T 1wyu_A 179 LT----LPL-EGGR----TPLPE----VGE-EVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS-LG 238 (438)
T ss_dssp EE----ECC-BTTB----CCCCC----CCT-TEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-GG
T ss_pred EE----EcC-cCCc----cCHHH----hCC-CeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-cc
Confidence 11 011 0000 13333 544 4666665554 55566654 99999999999999995522 21 22
Q ss_pred CCCccccccccCCcccEEEec-ccCC-----CccceeeEEeCHHHHhhccCCC--------------------------C
Q 012368 294 RTGYLWAHEHYGIFPDIMTLA-KPLA-----GGLPIGAALVTEKVASAINYGD--------------------------H 341 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~s-K~lg-----~G~~iG~v~~~~~i~~~~~~~~--------------------------~ 341 (465)
..... ..+ .+|++++| |.++ +|.++|++++++++++.+.... .
T Consensus 239 ~~~~~---~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~ 313 (438)
T 1wyu_A 239 VLKPP---GAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA 313 (438)
T ss_dssp TBCCH---HHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG
T ss_pred CcCCC---ccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchh
Confidence 11111 122 36888774 7654 2568999999998877663211 0
Q ss_pred cCCCCC---hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEE--EEEecCChHHHHHH
Q 012368 342 GSTFAG---SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII--GIEFDVSATPVVDA 416 (465)
Q Consensus 342 ~~t~~~---~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~--~i~~~~~~~~~~~~ 416 (465)
..|.+. +.+...++...+..+..+. ++++.+....+++.+.+.+.+.+.+........+. .+.++.+..++.+.
T Consensus 314 ~~t~~~~~~~~~~a~~aa~~l~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (438)
T 1wyu_A 314 KAKSNITTNAQLTALMGAMYLAALGPEG-LREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRA 392 (438)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCCCCHHHHHHH
Confidence 123332 2232222222244332222 33333333444444444444443332222212332 23334467889999
Q ss_pred HHHCCceE--eecC--CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 417 CRDSGLLV--LTAG--KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 417 l~~~Gv~v--~~~~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
|.++||.+ .++. .++.+|+++...+|++|+++++++|++++
T Consensus 393 L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 393 LAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp HHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 99999998 4432 14789999998899999999999998764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=158.72 Aligned_cols=277 Identities=14% Similarity=0.097 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHhh---cc-cccCCCCCHHHHHHHHHHHhhcCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012368 115 GDADWIKAVVDQANV---LT-HVSNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~---~~-~~~~~~~~~~~~~la~~l~~~~~~~~v~~---~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
|+++|.+|+.+.... .. .....|+.....+|+++++++++.+..++ ++||++|+..++..+.
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all----------- 98 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL----------- 98 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC-----------
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc-----------
Confidence 557788888775421 11 11223556668899999999999777666 8999999999988654
Q ss_pred CCCceEEEEc-CCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcc----cCC
Q 012368 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEP----IQG 257 (465)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep----~~~ 257 (465)
.++|.||+.+ +.|.+..... ...+.. ...+......+.+++. .|++++++++++ ++++|++++ .++
T Consensus 99 ~~GD~Vl~~~~~~y~~~~~~~-~~~g~~--~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~n 174 (409)
T 3jzl_A 99 RPDDELLYITGQPYDTLEEIV-GIRKQG--QGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADR 174 (409)
T ss_dssp CTTCEEEECSSSCCTTHHHHH-TSSSSS--SSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSS
T ss_pred CCCCEEEEeCCCCcHhHHHHH-hcccch--hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEECCCCCCCC
Confidence 2688999998 8876654211 000000 0000011112233333 489999999975 578888887 656
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCc--cceeeEEeCHH
Q 012368 258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGG--LPIGAALVTEK 331 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G--~~iG~v~~~~~ 331 (465)
..|.+. .+++|.++|++ ||+++|+||+|..+....... ..+ .|++ +++|.++++ ...|+++++++
T Consensus 175 ptg~v~----~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~---~~g--~Div~~S~sK~lgg~~~~~GG~v~~~~~ 245 (409)
T 3jzl_A 175 PSFTIE----KIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP---EVG--ADIIAGSLIKNPGGGLAKTGGYIAGKEA 245 (409)
T ss_dssp CCCCHH----HHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG---GGT--CSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred CcCccc----cHHHHHHHHHhhCCCCEEEEeCCcccccccCCcc---ccC--CeEEEECccccCCccCCceEEEEEeCHH
Confidence 666554 39999999999 999999999987542111111 123 4655 688999874 44699999999
Q ss_pred HHhhccCC--C--CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee----eeccceEEE
Q 012368 332 VASAINYG--D--HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD----VRGLGLIIG 403 (465)
Q Consensus 332 i~~~~~~~--~--~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~g~~~~ 403 (465)
+++.+... . .+...+..+..+.+++..++.+ +...++..++..++.+.|++. +.... .++...++.
T Consensus 246 li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~v~p~~~~~~~~~i~~ 319 (409)
T 3jzl_A 246 LVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEF----GVEADPVWDAPRTDLIQS 319 (409)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEESCTTSCCSSSCCE
T ss_pred HHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCCccEEEE
Confidence 98887531 1 1122222221133444444432 445666777777777777654 32111 112233777
Q ss_pred EEec--CChHHHHHHHHHCC
Q 012368 404 IEFD--VSATPVVDACRDSG 421 (465)
Q Consensus 404 i~~~--~~~~~~~~~l~~~G 421 (465)
+.++ ....++++.|.+..
T Consensus 320 i~l~~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 320 VSFHNKEKMVAFAQAIQAAS 339 (409)
T ss_dssp EECSCHHHHHHHHHHHHHTS
T ss_pred EEeCCHHHHHHHHHHHHhcC
Confidence 7774 23456788888763
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=167.23 Aligned_cols=300 Identities=14% Similarity=0.035 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHhhcCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCc
Q 012368 139 SIPQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHY 216 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~~~~-v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~ 216 (465)
.....++++.+++.++.+. +++++|+++|+..++..+. .++++||+..++|+......+..++. ..+
T Consensus 172 ~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~-----------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~ 240 (730)
T 1c4k_A 172 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV-----------SNGDLVLFDRNNHKSVYNSALAMAGGRPVY 240 (730)
T ss_dssp BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHTTTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhc-----------CCCCEEEEcCCchHHHHHHHHHHCCCEEEE
Confidence 3457889999999999655 5566666699999988664 26889999999876665441332222 111
Q ss_pred CCCCCCCCCCc-eEeeCCCHHHH-----HhhcCCC------C----eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 012368 217 RSPFEPVMPGV-NFVEYGNIEAT-----RKLIQPG------K----TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280 (465)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~d~~~l-----e~~l~~~------~----~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 280 (465)
... ....-+. .. -|+++| +++++++ . ..+++++|+ ..|.+.+ +++|.++|++||
T Consensus 241 v~~-~~~~~~i~g~---id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~~g 310 (730)
T 1c4k_A 241 LQT-NRNPYGFIGG---IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGHLC 310 (730)
T ss_dssp ECE-EECTTCCEEE---ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGGGB
T ss_pred EeC-CccccCccCC---CCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHHcC
Confidence 100 0000000 01 166666 8888753 2 345566663 3566665 999999999999
Q ss_pred CEEEEeccccC-CCCCC--c---cccccccCCc-cc-EE--EecccCCCccce-eeEEeCHHHH---------hhccCC-
Q 012368 281 ALLVFDEVQCG-LGRTG--Y---LWAHEHYGIF-PD-IM--TLAKPLAGGLPI-GAALVTEKVA---------SAINYG- 339 (465)
Q Consensus 281 ~llI~DEv~~g-~gr~g--~---~~~~~~~~~~-pd-i~--t~sK~lg~G~~i-G~v~~~~~i~---------~~~~~~- 339 (465)
++||+||+|.+ ++..+ . ....+.++.. ++ ++ +++|+++| ++. |+++.+++.+ ..+...
T Consensus 311 ~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~ 389 (730)
T 1c4k_A 311 DYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYCDHKHFNNSF 389 (730)
T ss_dssp SEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCCCHHHHHHHH
T ss_pred CeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcCcccccCHHHHHHHH
Confidence 99999999863 21111 1 1111122332 11 44 46798764 343 4554443322 011100
Q ss_pred CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCcee-e--------------------
Q 012368 340 DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKD-V-------------------- 395 (465)
Q Consensus 340 ~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~-------------------- 395 (465)
....+.+.+++.+++..++++.+.. .++++++.++.+++++.|++.+..+..... .
T Consensus 390 ~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 469 (730)
T 1c4k_A 390 NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY 469 (730)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchh
Confidence 0112334566666666677776543 456777888888888888661111110000 0
Q ss_pred ------------ec--cce-E-----EEEEec-------------CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCc
Q 012368 396 ------------RG--LGL-I-----IGIEFD-------------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIIS 442 (465)
Q Consensus 396 ------------~~--~g~-~-----~~i~~~-------------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t 442 (465)
.+ .+. + +.+..+ .++..+.+.|.++||.+...+. ..+|++++..+|
T Consensus 470 ~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~-~~ir~~~s~g~t 548 (730)
T 1c4k_A 470 WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDL-NSILFLMTPAET 548 (730)
T ss_dssp GBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECS-SEEEEECCTTCC
T ss_pred hccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCC-CeEEEEeCCCCC
Confidence 00 111 1 233331 3567899999999999987665 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012368 443 EQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 443 ~e~i~~~l~~l~~~l~~~~ 461 (465)
+++++.++++|.++.+.+.
T Consensus 549 ~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 549 PAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999887664
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=159.18 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=167.5
Q ss_pred CCHHHHHHHHHHHh--h-ccc-ccCCCCCHHHHHHHHHHHhhcCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012368 115 GDADWIKAVVDQAN--V-LTH-VSNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~--~-~~~-~~~~~~~~~~~~la~~l~~~~~~~~v~~---~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
+.++|++|+.+... . ... ....|+.....+|+++++++++.+..++ ++||++|+..++..+.
T Consensus 44 n~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all----------- 112 (427)
T 3i16_A 44 NQLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL----------- 112 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC-----------
T ss_pred CHHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh-----------
Confidence 34678888776421 1 111 1123455668899999999999776666 8999999999888654
Q ss_pred CCCceEEEEc-CCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCC-CCeEEEEEcc----cC
Q 012368 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQP-GKTAAVFVEP----IQ 256 (465)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~-~~~a~vi~ep----~~ 256 (465)
.++|+|++.+ +.|++..... ...+... ...+......+..++. .|+++++++++. .++++|++++ .+
T Consensus 113 ~pGD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~ 190 (427)
T 3i16_A 113 RPGNTMLSVCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGW 190 (427)
T ss_dssp CTTCEEEESSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSS
T ss_pred CCCCEEEEeCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCC
Confidence 2689999998 8887654211 0000000 0000011112223333 489999999973 4688888888 55
Q ss_pred CCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCH
Q 012368 257 GEGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTE 330 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~ 330 (465)
+..|.+ ..+++|+++|++ ||+++|+||+|..+....... ..+ .|++ +++|.+++ | .+.|++++++
T Consensus 191 nptg~i----~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~ 261 (427)
T 3i16_A 191 RRALLI----EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTK 261 (427)
T ss_dssp SCCCCH----HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECH
T ss_pred CCcccH----HHHHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccC--CeEEEecCcccCCCCCCceEEEEEECH
Confidence 555554 349999999999 999999999997552122211 123 3555 68899987 4 5679999999
Q ss_pred HHHhhccCCCCcCCCC--ChH-HH-HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccce-----E
Q 012368 331 KVASAINYGDHGSTFA--GSP-LV-CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL-----I 401 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~--~~~-~~-~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~-----~ 401 (465)
++++.+........++ ..| +. +..++..++.+ +...++..++..++.+.|++. +... .++... +
T Consensus 262 ~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~~i 334 (427)
T 3i16_A 262 DCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFEV-MPKYDEKRSDII 334 (427)
T ss_dssp HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSSC
T ss_pred HHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCccEE
Confidence 9998876411111111 111 22 23333333322 455667777777777766553 3311 222333 7
Q ss_pred EEEEec--CChHHHHHHHHHC
Q 012368 402 IGIEFD--VSATPVVDACRDS 420 (465)
Q Consensus 402 ~~i~~~--~~~~~~~~~l~~~ 420 (465)
+.+.+. ....+|++.|...
T Consensus 335 ~~i~l~~~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 335 QSIKFNDKDKLIEFCKGIQTG 355 (427)
T ss_dssp EEEECSSHHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHhhc
Confidence 788874 2345678888775
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-16 Score=156.48 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=168.5
Q ss_pred CCHHHHHHHHHHHhh---cc-cccCCCCCHHHHHHHHHHHhhcCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012368 115 GDADWIKAVVDQANV---LT-HVSNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~---~~-~~~~~~~~~~~~~la~~l~~~~~~~~v~~---~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
|+++|.+|+.+.... .. .....|+.....+|+++++++++.+..++ ++||++|+..++..+.
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all----------- 113 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNL----------- 113 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTC-----------
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhc-----------
Confidence 557888888775321 11 11123455568899999999999777777 8999999999888654
Q ss_pred CCCceEEEEc-CCcccCccccccccCCCCcCCCCCCCCCCceEeeC----CCHHHHHhhcCC-CCeEEEEEcc----cCC
Q 012368 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQP-GKTAAVFVEP----IQG 257 (465)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~-~~~a~vi~ep----~~~ 257 (465)
.++|+|++.+ +.|++..... ...+... ...+......+..++. .|+++++++++. .++++|++++ .++
T Consensus 114 ~pGD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 114 RPNDTMMSICGMPYDTLHDII-GMDDSKK-VGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp CTTCEEEECSSSCCGGGHHHH-TCCTTCC-SCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSS
T ss_pred CCCCEEEEeCCCCchhHHHHh-ccccchh-hhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCC
Confidence 2789999998 8887664111 0000000 0000011122233333 489999999972 4688888888 444
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHH
Q 012368 258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEK 331 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~ 331 (465)
..|.+ ..+++|+++|++ ||+++|+||+|..+....... ..+ .|++ |++|.+++ | .+.|+++++++
T Consensus 192 ptg~v----~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 192 KSLRI----AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CCCCH----HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred ccccH----HHHHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccC--CeEEEECCcccccccccceEEEEEECHH
Confidence 44544 349999999999 899999999987542122211 123 3555 68899987 4 56699999999
Q ss_pred HHhhccCC--C--CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc-----eEE
Q 012368 332 VASAINYG--D--HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG-----LII 402 (465)
Q Consensus 332 i~~~~~~~--~--~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g-----~~~ 402 (465)
+++.+... . .+.+.+.++..+..++..++.+ +...++..++..++.+.|++. +... .++.. .++
T Consensus 263 li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~li~ 335 (427)
T 3hvy_A 263 YVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDV-LPKYNDKRTDIIQ 335 (427)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSSEE
T ss_pred HHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCceEEE
Confidence 98887541 1 1111111111133333444322 455667777777777766553 3211 22222 377
Q ss_pred EEEec--CChHHHHHHHHHC
Q 012368 403 GIEFD--VSATPVVDACRDS 420 (465)
Q Consensus 403 ~i~~~--~~~~~~~~~l~~~ 420 (465)
.+.++ ....+|++.|...
T Consensus 336 ~~~l~~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 336 AIKFNDEKKLIDFIKGIQTA 355 (427)
T ss_dssp EEECSSHHHHHHHHHHHHHT
T ss_pred EEeCCCHHHHHHHHHHhccc
Confidence 78774 2245677777764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-15 Score=160.26 Aligned_cols=300 Identities=15% Similarity=0.057 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCC
Q 012368 140 IPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (465)
Q Consensus 140 ~~~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (465)
....++.+.+++.++.+ .++++||+++|+..++..+. .++++|++..++|+.........+....+.
T Consensus 205 g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~-----------~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v- 272 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM-----------TDNDVVVVDRNCHKSIEQGLMLTGAKPVYM- 272 (755)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHHHHHHCCEEEEE-
T ss_pred cHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhc-----------CCCCEEEECCCchHHHHHHHHHcCCEEEEE-
Confidence 34677888888888855 46667777899999988765 268999999999876554433322222211
Q ss_pred CCCCCCCC-ceE-eeC----CCHHHHHhhcCC--CCe--------EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCE
Q 012368 219 PFEPVMPG-VNF-VEY----GNIEATRKLIQP--GKT--------AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL 282 (465)
Q Consensus 219 ~~~~~~~~-~~~-~~~----~d~~~le~~l~~--~~~--------a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l 282 (465)
+...+ ... -+. -|+++|+++++. ... .+++++| + ..|.+.+ +++|.++|++||++
T Consensus 273 ---~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n-~~G~v~d----l~~I~~ia~~~~~~ 343 (755)
T 2vyc_A 273 ---VPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-T-YDGVCYN----AKEAQDLLEKTSDR 343 (755)
T ss_dssp ---CCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-C-TTSEEEC----HHHHHHHHTTTCSE
T ss_pred ---eCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-C-CCceecC----HHHHHHHHHHcCCE
Confidence 11100 000 000 178999999852 121 4666666 3 3566655 99999999999999
Q ss_pred EEEeccccCCCCCCccc--cccccC--Cc---c---cEEEecccCCCccceeeEEeCHH--HH--hhccCC-CCcCCCCC
Q 012368 283 LVFDEVQCGLGRTGYLW--AHEHYG--IF---P---DIMTLAKPLAGGLPIGAALVTEK--VA--SAINYG-DHGSTFAG 347 (465)
Q Consensus 283 lI~DEv~~g~gr~g~~~--~~~~~~--~~---p---di~t~sK~lg~G~~iG~v~~~~~--i~--~~~~~~-~~~~t~~~ 347 (465)
||+||+|.+.-..+..+ .....+ .. + -+.+++|+++|--..|+++++++ .+ ..+... ....+.+.
T Consensus 344 livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp 423 (755)
T 2vyc_A 344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSP 423 (755)
T ss_dssp EEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSC
T ss_pred EEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCH
Confidence 99999997421112110 000012 11 1 12357798764223566666443 11 111110 11223345
Q ss_pred hHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHc--------CCCc--eeeec-----------------
Q 012368 348 SPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLAR--------NPHV--KDVRG----------------- 397 (465)
Q Consensus 348 ~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~--------~~~~--~~~~~----------------- 397 (465)
+.+.+++..++++.+.. ++++++..++.+++++.|+++... +... ..+.+
T Consensus 424 ~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (755)
T 2vyc_A 424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLL 503 (755)
T ss_dssp CHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhc
Confidence 67777777778887654 357888899999999999886330 1000 00000
Q ss_pred ----------------------cc------eEEEEEec------------CChHHHHHHHHHCCceEeecCCCCEEEEec
Q 012368 398 ----------------------LG------LIIGIEFD------------VSATPVVDACRDSGLLVLTAGKGNVVRLVP 437 (465)
Q Consensus 398 ----------------------~g------~~~~i~~~------------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~ 437 (465)
.| ..+.+..+ .++..+.+.|.++||.+...+. +.+|+.+
T Consensus 504 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~-~~v~~~~ 582 (755)
T 2vyc_A 504 TTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTD-FQIMFLF 582 (755)
T ss_dssp HHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECS-SEEEEEC
T ss_pred cchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCC-CeEEEEE
Confidence 11 23334332 1336788899899999876554 7899999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 438 PLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 438 ~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+...|+++++.++++|.++.+...
T Consensus 583 ~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 583 SMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp CTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998876553
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=148.48 Aligned_cols=314 Identities=11% Similarity=0.021 Sum_probs=185.6
Q ss_pred CCCCCHHHHHHHHHHHhhccc-ccCC---CC-----CHHHHHHHHHHHhhcC-C--CeEEe-cCCHHHHHHHHHHHHHHH
Q 012368 112 LGHGDADWIKAVVDQANVLTH-VSNM---YY-----SIPQIELAKRLVACSF-A--DRVFF-SNTGTEANEAAIKFARKF 178 (465)
Q Consensus 112 lGh~~p~v~~a~~~~~~~~~~-~~~~---~~-----~~~~~~la~~l~~~~~-~--~~v~~-~~sG~eA~~~al~~a~~~ 178 (465)
.+.-+|+|.+|+.+.+..... ..+. .. .....+.++.|++.++ . ++|+| +.|||+++++++..+...
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence 345789999999998764221 1111 11 1225677778888887 2 46888 589999999999865421
Q ss_pred hhhcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCC
Q 012368 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG 257 (465)
Q Consensus 179 t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~ 257 (465)
.++|++++..-+.++....-.. ..+.... ..+...+.. .++++++..+++ ++++|.+..+..
T Consensus 101 ---------~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~---~~~~~~~~~----~~~~~~~~~i~~-~t~lV~~~h~et 163 (377)
T 3e77_A 101 ---------KAGRCADYVVTGAWSAKAAEEAKKFGTINI---VHPKLGSYT----KIPDPSTWNLNP-DASYVYYCANET 163 (377)
T ss_dssp ---------STTCEEEECCCSHHHHHHHHHHTTTSEEEE---CSCCCSSSC----SCCCGGGCCCCT-TCSCEEEESEET
T ss_pred ---------CCCCeEEEEECCHHHHHHHHHHHHhCCceE---EeccCCCcC----CCCChHHhccCC-CccEEEEeCccC
Confidence 0267887776666654211110 0011100 011111111 134556666654 456666666656
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhh
Q 012368 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASA 335 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~ 335 (465)
..|++.| + +|+++|+++++|-+++ +|. .....+.++ ++++| |.+| .-.+|++++++++++.
T Consensus 164 ~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~--~~id~~~~~----~~~~s~~K~~g-p~G~g~l~~~~~~l~~ 226 (377)
T 3e77_A 164 VHGVEFD----F-----IPDVKGAVLVCDMSSN-FLS--KPVDVSKFG----VIFAGAQKNVG-SAGVTVVIVRDDLLGF 226 (377)
T ss_dssp TTTEECS----S-----CCCCTTCCEEEECTTT-TTS--SCCCGGGCS----EEEEEGGGTTS-CTTCEEEEEETTSCSC
T ss_pred chheEch----h-----hhccCCCEEEEEcccc-cCC--CCCchhhcC----EEEEecccccC-CCccEEEEEcHHHHhh
Confidence 6687776 3 4789999999999997 432 223334444 34454 9994 4567888888887655
Q ss_pred ccCC-----------CCcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-e---e-ecc
Q 012368 336 INYG-----------DHGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-D---V-RGL 398 (465)
Q Consensus 336 ~~~~-----------~~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~---~-~~~ 398 (465)
+.+. ....++ ..|..+..+..++|+.+.+..=++.+.+....+.+.|.+.+.+.+.+. . . ...
T Consensus 227 ~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs 306 (377)
T 3e77_A 227 ALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRS 306 (377)
T ss_dssp CCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBC
T ss_pred ccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcC
Confidence 4321 012223 345566667778888765431233444444444444444444443221 1 1 122
Q ss_pred ceEEEEEecC-C--h---HHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 399 GLIIGIEFDV-S--A---TPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 399 g~~~~i~~~~-~--~---~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+..+.+.++. . . ..+...|.++||.+.++.. .+.+|+++...+|++|++.+++.|++++++
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 4456677642 1 1 3577788899999876532 245999999999999999999999998765
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=150.00 Aligned_cols=317 Identities=9% Similarity=-0.010 Sum_probs=181.3
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhccc-ccC------CC--CCHHHHHHHHHHHhhcC-C--CeEEe-cCCH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VSN------MY--YSIPQIELAKRLVACSF-A--DRVFF-SNTG 164 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~------~~--~~~~~~~la~~l~~~~~-~--~~v~~-~~sG 164 (465)
+.|+|..+... -+|+|++|+.+.+..... ..+ .. .....++.++.+++.++ . ++|+| +.||
T Consensus 27 ~~yl~~agpt~------~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGPAM------LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSSCC------CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCCCC------CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 46787655332 679999999876643211 000 01 12225677788888887 3 46888 6999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCC---CCceEeeCCCHHHHHh
Q 012368 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVM---PGVNFVEYGNIEATRK 240 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~d~~~le~ 240 (465)
|+++++++..+.. +++++++..-+.++....... ..+. . .+.+.. .+... +++++++
T Consensus 101 T~a~n~ai~~l~~-----------~gd~v~~~~~~~~~~~~~~~a~~~G~-v---~~v~~~~~~~G~~~----~~~~~~~ 161 (386)
T 3qm2_A 101 RGQFAGVPLNLLG-----------DKTTADYVDAGYWAASAIKEAKKYCA-P---QIIDAKITVDGKRA----VKPMREW 161 (386)
T ss_dssp THHHHHHHHHHCT-----------TCCEEEEEESSHHHHHHHHHHTTTSE-E---EEEECEEEETTEEE----ECCGGGC
T ss_pred hHHHHHHHHhccC-----------CCCeEEEEeCCHHHHHHHHHHHHhCC-e---EEEecCcccCCCCC----CchHHHh
Confidence 9999999886531 467777666655554211111 0010 0 001111 11101 3466777
Q ss_pred hcCCCCeEEEEEcccCCCCCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCC
Q 012368 241 LIQPGKTAAVFVEPIQGEGGIY-SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG 319 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~ 319 (465)
++++ ++++|.+..+....|++ .| +++|. +|+++++|-+|+ +|.. ....+.++ .++.+--|.+|
T Consensus 162 ~l~~-~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~~--pidv~~~~--~~~~s~hK~lG- 225 (386)
T 3qm2_A 162 QLSD-NAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILSA--PLDVSRYG--VIYAGAQKNIG- 225 (386)
T ss_dssp CCCT-TCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTSS--CCCGGGCS--EEEEETTTTTC-
T ss_pred hcCC-CCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCCC--CCCccccC--EEEEecccccC-
Confidence 7764 56667776666667875 54 44443 799999999997 4322 23333343 23333339994
Q ss_pred ccceeeEEeCHHHHhhccCCC-----------CcCCC-CChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHH
Q 012368 320 GLPIGAALVTEKVASAINYGD-----------HGSTF-AGSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLK 383 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~-----------~~~t~-~~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~ 383 (465)
...+|++++++++.+.+.+.. ....+ +.|..+..+..++|+.+.+. ...++.+++.+++++.|+
T Consensus 226 P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~ 305 (386)
T 3qm2_A 226 PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVID 305 (386)
T ss_dssp CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 566899999988865443210 01111 22334555666677765433 344445555555555554
Q ss_pred HHHHcCCCcee---e-eccceEEEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 384 QKLARNPHVKD---V-RGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 384 ~~~~~~~~~~~---~-~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+ .+.... . ...+..+.+.++. ....+...|.++||.+..+.. .+.+|+++....|++||+.+++.|+++
T Consensus 306 ~----~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~ 381 (386)
T 3qm2_A 306 N----SDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDF 381 (386)
T ss_dssp T----CSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred H----CCCcccCCCHHHcCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3 342111 1 1223456666642 235677788899999876532 134999999999999999999999988
Q ss_pred HHH
Q 012368 457 LPV 459 (465)
Q Consensus 457 l~~ 459 (465)
.++
T Consensus 382 ~~~ 384 (386)
T 3qm2_A 382 ERR 384 (386)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-14 Score=137.64 Aligned_cols=298 Identities=8% Similarity=-0.046 Sum_probs=175.2
Q ss_pred CCHHHHHHHHHHHhhccc-ccCC---CC-----CHHHHHHHHHHHhhcCC---CeEEe-cCCHHHHHHHHHHHHHHHhhh
Q 012368 115 GDADWIKAVVDQANVLTH-VSNM---YY-----SIPQIELAKRLVACSFA---DRVFF-SNTGTEANEAAIKFARKFQRH 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~-~~~~---~~-----~~~~~~la~~l~~~~~~---~~v~~-~~sG~eA~~~al~~a~~~t~~ 181 (465)
-+|+|++|+.+.+..... ..+. .+ .....+.++.+++.++. ++|+| |+|||+|+++++..+.
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~----- 90 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA----- 90 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-----
Confidence 579999999987754211 1110 11 12356777788888872 37888 9999999999988554
Q ss_pred cCCCCCCCCceEEEEcCCcccCccc--cccccCCCCcCCCCCCCCCCceEeeCC-------CHHHHHhhcCCCCeEEEEE
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEYG-------NIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~a~vi~ 252 (465)
+++++.....+.+++... +...+ ..+..++.+ +++. + |++ ++++|.+
T Consensus 91 -------~~~~~~~i~~~~~~~~~~~~a~~~G-------------~~v~~~~~~~~g~~~~~~~~-~--l~~-~t~lv~~ 146 (361)
T 3m5u_A 91 -------LNGVCEYANTGVWTKKAIKEAQILG-------------VNVKTVASSEESNFDHIPRV-E--FSD-NADYAYI 146 (361)
T ss_dssp -------CSSCEEEEECSHHHHHHHHHHHHTT-------------CCEEEEEECTTTTSCSCCCC-C--CCT-TSSEEEE
T ss_pred -------CCCeEEEEeCCHHHHHHHHHHHHcC-------------CceEEEecccCcCCCcCChh-h--cCC-CCCEEEE
Confidence 244443332333343211 11111 111111110 2333 3 654 4566666
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCH
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE 330 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~ 330 (465)
..+....|++.+. +++ +|+++++|-+|+ +|.. ....+ ..|++++| |.+| .-.+|++++++
T Consensus 147 ~~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~g-p~G~g~l~~~~ 208 (361)
T 3m5u_A 147 CSNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNAG-ISGLSCIFIRK 208 (361)
T ss_dssp ESEETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTSS-CTTCEEEEEEH
T ss_pred eCCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhccC-CCccEEEEEcH
Confidence 5555556776542 344 499999999997 5322 12222 25778776 9994 45688999999
Q ss_pred HHHhhccC----CC--------CcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc-ee-e
Q 012368 331 KVASAINY----GD--------HGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV-KD-V 395 (465)
Q Consensus 331 ~i~~~~~~----~~--------~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-~ 395 (465)
++.+.+.+ .. ...++ +.|..+..+..++|+.+.+..=.+++.+....+.+.+.+.+.+.+.+ .. .
T Consensus 209 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~ 288 (361)
T 3m5u_A 209 DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHA 288 (361)
T ss_dssp HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESS
T ss_pred HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccC
Confidence 88766543 10 11222 34566677777888877544112334444444444444444444422 11 1
Q ss_pred ---eccceEEEEEecC--C-hHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 396 ---RGLGLIIGIEFDV--S-ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 396 ---~~~g~~~~i~~~~--~-~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
......+.+.++. . ..++...|.++||.+..+.. -+.+|+++....|++|++.+++.|+++.++
T Consensus 289 ~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 289 DKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 1123456676642 2 24688888899999876532 245999999999999999999999988765
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=145.00 Aligned_cols=297 Identities=13% Similarity=0.115 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEecCCH-HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCC
Q 012368 140 IPQIELAKRLVACSFADRVFFSNTG-TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (465)
Q Consensus 140 ~~~~~la~~l~~~~~~~~v~~~~sG-~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (465)
....++++++++.++.++.+|+++| +.||..++.++. .++|+||+..++|.....+....+..+.+..
T Consensus 195 g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~-----------~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~ 263 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA-----------PAGSTILIDRNCHKSLTHLMMMSDVTPIYFR 263 (715)
T ss_dssp THHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHHHHHSCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC-----------CCCCEEEECCCccHHHHHHHHHcCCEEEEEe
Confidence 3377889999999997776666555 699988888665 2689999999887665544333333333221
Q ss_pred CCCCCCCCceEeeCC------CHHHHHhhcCC--CCe---EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012368 219 PFEPVMPGVNFVEYG------NIEATRKLIQP--GKT---AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~------d~~~le~~l~~--~~~---a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
+.. .... ++.+ |+++|++++++ +.. ++|+++| +..|.+.+ +++|.++|++++ +|+||
T Consensus 264 ~~~---~~~g-i~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDE 331 (715)
T 3n75_A 264 PTR---NAYG-ILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp CCB---CTTC-CBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEEC
T ss_pred ccc---cccc-cccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEcc
Confidence 110 1111 1111 78999999972 112 4677777 44566655 889999998764 79999
Q ss_pred cccCCCCCCcccc-c--cccCCcccE-----EEecccCCCccceeeEEeCHHHH-hhccC-CCCcCCCCChHHHHHHHHH
Q 012368 288 VQCGLGRTGYLWA-H--EHYGIFPDI-----MTLAKPLAGGLPIGAALVTEKVA-SAINY-GDHGSTFAGSPLVCNAAIA 357 (465)
Q Consensus 288 v~~g~gr~g~~~~-~--~~~~~~pdi-----~t~sK~lg~G~~iG~v~~~~~i~-~~~~~-~~~~~t~~~~~~~~~aa~a 357 (465)
+|......+..+. . ...+..+|+ .+++|++++--..|++.+++++. +.+.. .....|.+.+++.+++..+
T Consensus 332 AH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~Aslda 411 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTET 411 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHH
T ss_pred ccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 9974311222110 1 111212454 35679987522346666654321 11111 1123445678888888888
Q ss_pred HHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCC-----ce--eee-------------------ccc------eEE
Q 012368 358 VLDKISN---PAFLASVSKKGHYFKETLKQKLARNPH-----VK--DVR-------------------GLG------LII 402 (465)
Q Consensus 358 ~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~--~~~-------------------~~g------~~~ 402 (465)
+++.+.. +++++++.++.+++++.|+++....+. +. .+. +.+ +=+
T Consensus 412 A~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl 491 (715)
T 3n75_A 412 AAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKV 491 (715)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEE
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEE
Confidence 8887752 468899999999999999887431100 00 000 001 112
Q ss_pred EEEec------------CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 403 GIEFD------------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 403 ~i~~~------------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+... ..+..+.+.|.++||.+--... ..+-+.++...|++++++++++|.++-+..
T Consensus 492 ~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~-~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 492 TLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGP-YNLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp EEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEET-TEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCC-CcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 22221 2345788889899999876654 556666677889999999999998776544
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-12 Score=124.43 Aligned_cols=298 Identities=8% Similarity=0.009 Sum_probs=172.0
Q ss_pred HHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC-CCCcCCCCCC
Q 012368 147 KRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-KEHYRSPFEP 222 (465)
Q Consensus 147 ~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~~~~~~~ 222 (465)
++|.+. | ....+++|++|-++.+++.++..... +++++||+.. .-|-+...++.+.+ .+.+..+..
T Consensus 124 d~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~r-------pg~d~VIvpR-n~HKSv~kAliL~Gl~Pv~V~p~~- 193 (501)
T 3hl2_A 124 DIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKR-------PKAKYIIWPR-IDQKSCFKSMITAGFEPVVIENVL- 193 (501)
T ss_dssp HHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHC-------TTCCEEEEEC-CCCHHHHHHHHHTTCEEEEECEEE-
T ss_pred HHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCccc-------CCCCEEEEec-chHHHHHHHHHHcCCeEEEEeeee-
Confidence 444444 5 34588899988777777666554221 0247788754 55666666665543 333321100
Q ss_pred CCCCceEeeCCCHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 223 VMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 223 ~~~~~~~~~~~d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
...... -|+++++++|+. +.+++|+..|....++..-+ +++|+++|++||+++++||+|-..-.....+
T Consensus 194 d~~~~~----id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~l 265 (501)
T 3hl2_A 194 EGDELR----TDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHL 265 (501)
T ss_dssp ETTEEE----ECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHH
T ss_pred cccccC----CCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhh
Confidence 001111 189999999972 45666766664443333333 9999999999999999999986531111111
Q ss_pred cccccCC-cccEEEec--ccCCCccceeeEEe-CHHHHhhccCCCCcCCCCChHHH-HHHHHHHHHHhcCchHHHHHHHH
Q 012368 300 AHEHYGI-FPDIMTLA--KPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLV-CNAAIAVLDKISNPAFLASVSKK 374 (465)
Q Consensus 300 ~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~-~~aa~a~L~~~~~~~~~~~~~~~ 374 (465)
....+.. ..|+++.| |.+-.-++.+.+.. ++++++.+... ..++-+++|.. ..+++..+-.-.-.+++++..++
T Consensus 266 p~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~-yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~el 344 (501)
T 3hl2_A 266 IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKM-YPGRASASPSLDVLITLLSLGSNGYKKLLKERKEM 344 (501)
T ss_dssp HHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHT-SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHHh-CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 37888887 65432222233333 55677666432 22333444322 23322222211125667778888
Q ss_pred HHHHHHHHHHHHHcCC-CceeeeccceEEEEEecC-------ChHHHHHHHHHCCce---EeecC---------------
Q 012368 375 GHYFKETLKQKLARNP-HVKDVRGLGLIIGIEFDV-------SATPVVDACRDSGLL---VLTAG--------------- 428 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~-------~~~~~~~~l~~~Gv~---v~~~~--------------- 428 (465)
.++|++.|+++...++ .+...+....-+++.++. ....+-..|..++|- +.+.+
T Consensus 345 a~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~ 424 (501)
T 3hl2_A 345 FSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMS 424 (501)
T ss_dssp HHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTT
T ss_pred HHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCccc
Confidence 9999999999877665 222333334444555521 135677778887553 32221
Q ss_pred -----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 429 -----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 429 -----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+..++-+.....++++|+|.++++|++++.+++++
T Consensus 425 h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 425 HTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp TSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 02356666677889999999999999999988754
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-12 Score=128.42 Aligned_cols=300 Identities=11% Similarity=0.015 Sum_probs=172.4
Q ss_pred HHHHHHHHHhhcC---CCeEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-Cc
Q 012368 142 QIELAKRLVACSF---ADRVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HY 216 (465)
Q Consensus 142 ~~~la~~l~~~~~---~~~v~~~~sG~-eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~ 216 (465)
...+..++.+.+| ....+++||+| .++.+++.+++.... +++.||+... -|-+...++.+.+.. .+
T Consensus 100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~--------~~~~viv~r~-aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRP--------KAKYIIWPRI-DQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCT--------TCCEEEEECC-CCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhc--------CCCEEEEECC-cHHHHHHHHHHcCCeeEE
Confidence 4456666767666 33468899987 666666777775321 2567777755 788877776655432 22
Q ss_pred CCCCCCCCCCceEeeCCCHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 217 RSPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
..+ .+... . .. -|+++|+++|+. +.+++|++.|....+|.+-+ +++|.++|++||++|++||+|.+.-
T Consensus 171 v~~-~~~~~--~-~~-id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 171 IEN-VLEGD--E-LR-TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp ECC-EEETT--E-EE-CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred EEe-eecCc--c-CC-cCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 111 01011 1 11 289999999962 35778888876655555544 9999999999999999999986532
Q ss_pred CCCccccccccCC-cccEEEec--ccCCCccceeeEEe-CHHHHhhccCCCCcCCCCChH-HHHHHHHHHHHHhcCc---
Q 012368 294 RTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSP-LVCNAAIAVLDKISNP--- 365 (465)
Q Consensus 294 r~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~-~~~~aa~a~L~~~~~~--- 365 (465)
+....+....... ..|++++| |.+......+.+.. +++..+.+..... .+-+.+| +...+.+ +. +..+
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~-g~~s~SpsL~l~~~l--~~-~G~~g~~ 317 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP-GRASASPSLDVLITL--LS-LGCSGYR 317 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSC-SCBCSHHHHHHHHHH--HH-HHHHHHH
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhh-cCCcccHHHHHHHHH--HH-HHHHHHH
Confidence 2111111011111 46888877 87766566677765 4555555532211 1112233 2222222 22 2222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCC-ceeeeccceEEEEEe-------cCChHHHHHHHHHCCc---eEe---------
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEF-------DVSATPVVDACRDSGL---LVL--------- 425 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~i~~-------~~~~~~~~~~l~~~Gv---~v~--------- 425 (465)
++.++..++.+++++.++++...++. +......+.-..+.+ +.+..++.-.+...|+ -+.
T Consensus 318 ~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~ 397 (450)
T 3bc8_A 318 KLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVS 397 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEET
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchh
Confidence 23444467778888888887644442 111111111122322 1234456666666552 222
Q ss_pred ----ec-C------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 426 ----TA-G------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 426 ----~~-~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.. + ....+-+..+...+++++++++++|++++++.+++
T Consensus 398 ~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~ 446 (450)
T 3bc8_A 398 GHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 446 (450)
T ss_dssp TEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 10 1 12456677788899999999999999998877654
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-08 Score=98.90 Aligned_cols=316 Identities=15% Similarity=0.135 Sum_probs=163.8
Q ss_pred CCHHHHHHHHHHHhh-ccccc---CCC-CCHH---HHHHHH-HHHhhcCCCe-----EEecCCHHHHHHHHHHHHHHHhh
Q 012368 115 GDADWIKAVVDQANV-LTHVS---NMY-YSIP---QIELAK-RLVACSFADR-----VFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~---~~~-~~~~---~~~la~-~l~~~~~~~~-----v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.+|.|.+|+-..+.. +.-++ .+| ..+. .+.|+. +..+.++.+. =+=..||+.||..++.++.
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All---- 141 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL---- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc----
Confidence 557777776655532 11110 111 1221 333333 4455667332 1345689999999888776
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccc-------cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGAL-------ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.|+|+|+..+..--|+..... ..++. .|.....+..+....+ |.++++++....++++||+-
T Consensus 142 -------~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~-~~~~~~Y~vd~~t~~I---Dyd~~~~~A~~~kPklIi~G 210 (490)
T 3ou5_A 142 -------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSI-FFESMPYKLNPKTGLI---DYNQLALTARLFRPRLIIAG 210 (490)
T ss_dssp -------C-CCCEECBC-----------------------------CBCEETTTTEE---CHHHHHHHHHHHCCSEEEEC
T ss_pred -------CCCCEEEecccCCCCcccccccCCCcccccccc-cccccccccCCCCCcc---cHHHHHHHHhhcCCCeEEEC
Confidence 279999998876544443221 11111 1110000111111111 78888887775567788886
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE 330 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~ 330 (465)
...-. ...+ +++++++|++.|++|++|-+|. |+--.|. +. .-+. ..|++|.+ |+|.| -|.|.+++++
T Consensus 211 ~SaY~---r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~p-sP~~-~ADvVTtTTHKTLrG-PrGG~Il~~~ 280 (490)
T 3ou5_A 211 TSAYA---RLID---YARMREVCDEVKAHLLADMAHISGLVAAKV-IP-SPFK-HADIVTTTTHKTLRG-ARSGLIFYRK 280 (490)
T ss_dssp CSSCC---SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SC-CGGG-TCSEEEEESSSTTCS-CSCEEEEEEC
T ss_pred CccCc---cccC---HHHHHHHHhhcccEEEechhhhhhhhcccc-cC-Cccc-cceEEeccccccccC-CCceEEEecc
Confidence 64322 1222 8899999999999999999864 3321221 11 1112 25888776 88865 3667777765
Q ss_pred H---------------HHhhccCCCCcCCCCChHHHHHHHH-HHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012368 331 K---------------VASAINYGDHGSTFAGSPLVCNAAI-AVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 331 ~---------------i~~~~~~~~~~~t~~~~~~~~~aa~-a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
+ +.+.+....+.+..+++-.-..||. .++....+ .++.+++.++.+.|.+.|.+. .+.+
T Consensus 281 ~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~--G~~v 358 (490)
T 3ou5_A 281 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GYSL 358 (490)
T ss_dssp SEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred ccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC--CCee
Confidence 2 2222221111122222222222222 22333223 356677777777777777653 3332
Q ss_pred ceeeeccceEEEEEec---CChHHHHHHHHHCCceEee----cCC----CCEEEEecC----CCCcHHHHHHHHHHHHHH
Q 012368 392 VKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLT----AGK----GNVVRLVPP----LIISEQELDQAVEILCKT 456 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~----~~~----~~~lRi~~~----~~~t~e~i~~~l~~l~~~ 456 (465)
+..- ....++.+++. ....+..+.|.+.||.+.. ... ..-|||-.+ ....++|++++.+.|.++
T Consensus 359 vsGg-TdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~ 437 (490)
T 3ou5_A 359 VSGG-TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG 437 (490)
T ss_dssp GGGS-CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ecCC-CCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 2211 11235566762 3456667777788998752 211 245899765 346789999999998887
Q ss_pred HH
Q 012368 457 LP 458 (465)
Q Consensus 457 l~ 458 (465)
+.
T Consensus 438 l~ 439 (490)
T 3ou5_A 438 VN 439 (490)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 465 | ||||
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 1e-122 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 1e-120 | |
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 1e-115 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 1e-102 | |
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 2e-77 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 5e-77 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 1e-74 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 2e-67 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-25 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 7e-24 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 2e-22 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 4e-22 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 2e-11 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 1e-09 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 1e-07 |
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 359 bits (921), Expect = e-122
Identities = 155/398 (38%), Positives = 242/398 (60%), Gaps = 16/398 (4%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
+ ++EAEK L G YN+ +++ G+G +++DAEG EY+D G V LGHG+ + ++A
Sbjct: 2 RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEA 61
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR 180
V QA L + + + E + L A + RVF N+GTEANEAA+KFAR
Sbjct: 62 VKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTG 121
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
+FV+ F GRTMG+L++T + YR PF P++ V F+ Y ++EA ++
Sbjct: 122 R---------KKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR 172
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+ +TAAV +EP+QGEGG+ AT EFL+ R+ + GALL+ DE+Q G+GRTG +A
Sbjct: 173 AV-DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 231
Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
EH+GI PDI+TLAK L GG+P+G A++ E+VA ++ G HG+TF G+PL A +A +
Sbjct: 232 FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIR 291
Query: 361 KISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATP-VVDACRD 419
+ ++ G +F E L+ +P +++VRG+GL++G+E A P + ++
Sbjct: 292 YLERTRLWERAAELGPWFMEKLRA--IPSPKIREVRGMGLMVGLELKEKAAPYIARLEKE 349
Query: 420 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+L L AG V+R +PPL+I +++L++ VE + L
Sbjct: 350 HRVLALQAG-PTVIRFLPPLVIEKEDLERVVEAVRAVL 386
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 354 bits (910), Expect = e-120
Identities = 137/406 (33%), Positives = 207/406 (50%), Gaps = 6/406 (1%)
Query: 60 RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+ ++ + E K Y+ PVVL KG +YD + Y D S + GH +
Sbjct: 1 KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNI 60
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
+ A+++QA LT S ++S+P + L D+V NTG EANE A K RK+
Sbjct: 61 LNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG 120
Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
E + V N+F GRT+G ++ ++ + S F P P + V Y ++EA
Sbjct: 121 YE-VKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALE 179
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
+ ++ A VEPIQGE G+ + +LQ + D C L V DEVQ GLGRTG L
Sbjct: 180 EELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL 239
Query: 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAV 358
HY + PD++ L K L+GG PI A L + + I G+HGST+ G+PL + +
Sbjct: 240 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEA 299
Query: 359 LDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVD 415
L+ + N + K G F E LK++L + V+DVRG GL+ IEF V+ +
Sbjct: 300 LNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICL 359
Query: 416 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461
+++GL+ +RL PPL I++++LD+ EI+ KT+ D
Sbjct: 360 KLKENGLITRDVH-DKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 404
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 342 bits (879), Expect = e-115
Identities = 131/402 (32%), Positives = 196/402 (48%), Gaps = 9/402 (2%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
+ ++ E E K + PV L GKG L+D EGR+Y D S I+ GH +
Sbjct: 4 TSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 63
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
A+ Q + LT S +Y+ E + + +V NTG EA E A K ARK+
Sbjct: 64 NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 123
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
++ + V +F GRT+ A++ ++ F P MPG + + Y ++ A +
Sbjct: 124 TVKGI-QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 182
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+Q AA VEPIQGE G+ +L +R+ C L + DE+Q GL RTG A
Sbjct: 183 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 242
Query: 301 HEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
++ + PDI+ L K L+GG P+ A L + + I G+H ST+ G+PL C AIA L
Sbjct: 243 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAAL 302
Query: 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF----DVSATPVVD 415
+ + + K G + L + + V VRG GL+ I D A V
Sbjct: 303 EVLEEENLAENADKLGIILRNELMK--LPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCL 360
Query: 416 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
RD+GLL G+++R PPL+I E EL +++EI+ KT+
Sbjct: 361 RLRDNGLLAKPTH-GDIIRFAPPLVIKEDELRESIEIINKTI 401
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 309 bits (791), Expect = e-102
Identities = 138/428 (32%), Positives = 210/428 (49%), Gaps = 40/428 (9%)
Query: 61 NNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + + P+ + C+++D EGREYLD + GIAV GH
Sbjct: 2 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 61
Query: 120 IKAVVDQANVLTHVS-NMYYSIPQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + V FA + TG+EA E A+K A
Sbjct: 62 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 121
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----- 230
R + + ++F+ ++HGRT LALT K + S +MPG +
Sbjct: 122 RAATKR---------SGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 172
Query: 231 ----------EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
+ P AA+ +EP+QGEGG Y+++ F+Q LR CD+ G
Sbjct: 173 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 232
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DEVQ G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 233 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 292
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400
G T+AG+P+ C AA+ VL L + G K+ L ++P + DVRGLG
Sbjct: 293 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 352
Query: 401 IIGIEFDVS----------ATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQA 449
+I IE +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 353 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 412
Query: 450 VEILCKTL 457
+EI+ +
Sbjct: 413 LEIISQCF 420
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 245 bits (627), Expect = 2e-77
Identities = 94/435 (21%), Positives = 150/435 (34%), Gaps = 55/435 (12%)
Query: 62 NKEVMEAEKKLLVG----------TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNA 111
+ E+ A +KL+ G + P+V K +D +G Y+D
Sbjct: 6 SDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAI 65
Query: 112 LGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELA-KRLVACSFADRVFFSNTGTEANEA 170
GH + I+A+ T + LA A + V F N+GTEA A
Sbjct: 66 CGHAHPEVIEALKVAMEKGTSFGAPCA--LENVLAEMVNDAVPSIEMVRFVNSGTEACMA 123
Query: 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF- 229
++ R + + + F +HG L P PGV
Sbjct: 124 VLRLMRAYTGR---------DKIIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPKK 173
Query: 230 -------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
Y ++EA + L PG+ A V +EPI G G FL+ LR+ +
Sbjct: 174 TTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN--- 337
ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+GA ++ +
Sbjct: 234 ALLVFDEVMTG-FRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAG 292
Query: 338 YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG 397
T +G+PL A I L+ + P + + + L H
Sbjct: 293 PMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQ 352
Query: 398 LGLIIGIEFDVS---------------ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIIS 442
+ + G F + + G+ + L +
Sbjct: 353 VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAP---SQFEAGFTSLAHT 409
Query: 443 EQELDQAVEILCKTL 457
E+++D + +
Sbjct: 410 EEDIDATLAAARTVM 424
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 244 bits (624), Expect = 5e-77
Identities = 117/410 (28%), Positives = 179/410 (43%), Gaps = 29/410 (7%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
GT+ P+++ KG +YDA+GR LD +SG LGH + + + + A L H+
Sbjct: 20 GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 77
Query: 135 NMYYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFA-----RKFQRHSNPDSK 187
+ S P ++LA RL + DR +TG E+NEAAI+ A +
Sbjct: 78 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWH 137
Query: 188 EPATEFVSFTNS-----FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
S T S +G+ A+ + YR FE E
Sbjct: 138 GMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ 197
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
G AA EPI GGI ++ L+ C+ G LL+ DE Q G+GRTG ++A +
Sbjct: 198 SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQ 257
Query: 303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLD 360
G+ PDI+TL+K L GLP+ A + + + + + +T PL + VLD
Sbjct: 258 RDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLD 317
Query: 361 KISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF----------DVSA 410
+ +A + G + L + R + DVRG GL++G+E D
Sbjct: 318 VVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLG 377
Query: 411 TPVVDACRDSGLL---VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+ C + GL V G G V R+ PPL +SE E+D + +L + +
Sbjct: 378 AKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 427
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 239 bits (609), Expect = 1e-74
Identities = 108/401 (26%), Positives = 168/401 (41%), Gaps = 29/401 (7%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYS 139
+ S +GC+L ++GR +D S G+ A+ Q + ++HV
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 140 IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
P IEL ++LVA + + + + Q E F++F N
Sbjct: 86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW--QAKGEARQRFLTFRNG 143
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI--------------QPG 245
+HG T GA+++ ++ N
Sbjct: 144 YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203
Query: 246 KTAAVFVEPIQ-GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY 304
+ AAV +EPI G GG+ E+L+ +R CD G LL+ DE+ G GRTG L+A EH
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 305 GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLVCNAAIAV 358
I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+PL C AA A
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323
Query: 359 LDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDA 416
L + + + V+ +E L V DVR LG I +E V+ +
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLA-PARDAEMVADVRVLGAIGVVETTHPVNMAALQKF 382
Query: 417 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+ G+ + G ++ L+PP II Q+L + + + +
Sbjct: 383 FVEQGVWIRPF--GKLIYLMPPYIILPQQLQRLTAAVNRAV 421
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 221 bits (562), Expect = 2e-67
Identities = 98/451 (21%), Positives = 153/451 (33%), Gaps = 58/451 (12%)
Query: 59 GRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD 118
G ++E+M+ + +G L D +G LDL S I+ +G+
Sbjct: 14 GPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPA 73
Query: 119 WIKAVVDQANVLTHVSN-MYYSIPQIEL----AKRLVACSF--ADRVFFSNTGTEANEAA 171
+K V NV T ++ +P + L++ + ++ G+ +NE A
Sbjct: 74 LVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENA 133
Query: 172 IKFARKFQRH-----------------SNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
K + R N P +SF +FHGRTMG LA T +
Sbjct: 134 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK 193
Query: 215 HYRSPFEPVMPGVNFV---------------------EYGNIEATRKLIQ--PGKTAAVF 251
P +E + A +
Sbjct: 194 AIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII 253
Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF--PD 309
VEPIQ EGG A+ +F + LRD G + DEVQ G G TG WAHEH+G+ D
Sbjct: 254 VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPAD 313
Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369
+MT +K + G I G L + I L+
Sbjct: 314 VMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVI-----NIIKREDLLS 368
Query: 370 SVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLT 426
+ + G L AR P + VRG G + + ++ R+ G+++
Sbjct: 369 NAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGG 428
Query: 427 AGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
G +R P L+ + + I L
Sbjct: 429 CG-DKSIRFRPTLVFRDHHAHLFLNIFSDIL 458
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 106 bits (265), Expect = 2e-25
Identities = 49/441 (11%), Positives = 106/441 (24%), Gaps = 58/441 (13%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD-------WIKAVVDQANVLTHV 133
P + + ++ E RE +G L A+ D
Sbjct: 7 PFRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMIT 66
Query: 134 SNMYYSIPQI--ELAKRLVACSFADRVFFSNTGTEANEAAIKFARK-FQRHSNPDSKEPA 190
+ Y+ + +L + D + ++ G A K Q+ +
Sbjct: 67 GDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFI 126
Query: 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250
+ F T + H G A+ E + ++ A+
Sbjct: 127 SNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAI 186
Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC------GLGRTGYLWAHEHY 304
G + L+ + + G +V D + R
Sbjct: 187 VSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK 246
Query: 305 GIFPDIM------TLAKPLAGGLPIGAALVT-------EKVASAINYGDHGSTFAGSPLV 351
+ D+ T++ L IG + + T+ G
Sbjct: 247 EVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGR 306
Query: 352 CNAAIAVLDK-ISNPAFLASVSKKGHYFKETLKQKLAR---------------------- 388
AA+ + + +L + Y + L++
Sbjct: 307 DMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIP 366
Query: 389 ---NPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRL-VPPLIISEQ 444
P + L L G+ + ++ +G +RL + + +
Sbjct: 367 GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHAD--MEFMRLTIARRVYTND 424
Query: 445 ELDQAVEILCKTLPVLDSNSN 465
+D + L +
Sbjct: 425 HMDYIADALIGLKEKFATLKG 445
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 101 bits (252), Expect = 7e-24
Identities = 52/437 (11%), Positives = 111/437 (25%), Gaps = 63/437 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA-------DWIKAVVD-QANVLTH 132
P + + K RE + SG+ L D AV +
Sbjct: 6 PFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMR 65
Query: 133 VSNMYYSIPQI-ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191
+ LA+ + ++ G A + I K + + +
Sbjct: 66 GDEAFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDR---S 122
Query: 192 EFVSFTNSFHGRTMGALALTSKE------HYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245
+ V+F+N F T G + + +E + + P
Sbjct: 123 KMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN 182
Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC---GLGRTGYLWAHE 302
+ G + L+ + +V D + ++
Sbjct: 183 NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYK 242
Query: 303 HYGI---------FPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGSTFAGSPL 350
+ I + D++ ++ +P+G L + + Y G P
Sbjct: 243 DWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPT 302
Query: 351 VCNAAIAV-------LDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK------DVRG 397
L N +LA + Y + L++ D
Sbjct: 303 YGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGK 362
Query: 398 LGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----------------GNVVRL-VPPLI 440
L I + + + + +G+ + G ++RL +P
Sbjct: 363 LLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRAT 422
Query: 441 ISEQELDQAVEILCKTL 457
++ +D +E
Sbjct: 423 YTQTHMDFIIEAFKHVK 439
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 96.1 bits (237), Expect = 2e-22
Identities = 44/358 (12%), Positives = 96/358 (26%), Gaps = 24/358 (6%)
Query: 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADR-V 158
L SS + + + +A+V + ++ ++ D V
Sbjct: 4 ALGFSS----DNIAGASPEVAQALVKHS--SGQAGPYGTDELTAQVKRKFCEIFERDVEV 57
Query: 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218
F TGT AN + + ++ + ++
Sbjct: 58 FLVPTGTAANALCLSAMTPPWGNIYCHP---------ASHINNDECGAPEFFSNGAKLM- 107
Query: 219 PFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD 278
+ K+ T V Q T + ++ + D C
Sbjct: 108 -TVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKS 166
Query: 279 AGALLVFDEVQCG--LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI 336
+ L D + L G A + D ++ G L A ++ +
Sbjct: 167 SSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATE 226
Query: 337 NYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396
S + + + +++ +L + K + +
Sbjct: 227 MSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG 286
Query: 397 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKG-NVVRLVPPLIISEQELDQAVEIL 453
I+ D + ++DA +G G NVVR V + +++D + +
Sbjct: 287 TEANILFCRLD---SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 94.8 bits (234), Expect = 4e-22
Identities = 47/324 (14%), Positives = 103/324 (31%), Gaps = 15/324 (4%)
Query: 136 MYYSIPQI-ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
+Y P I EL + + F +GT N+ +I + ++
Sbjct: 29 VYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEAD------- 81
Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254
H A+ P G + + I +T+ + +E
Sbjct: 82 -----SHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIEN 136
Query: 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA 314
G E ++ + + G + D + + Y + D +
Sbjct: 137 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFC 196
Query: 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKK 374
P+G+ +V ++ G A A + ++ +
Sbjct: 197 LSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHE 256
Query: 375 GHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVV 433
F +++ + + +DV+ +I+ + V+A ++A R+SG+L +
Sbjct: 257 NARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSD-TEI 315
Query: 434 RLVPPLIISEQELDQAVEILCKTL 457
RLV +S ++++A+ I K
Sbjct: 316 RLVTHKDVSRNDIEEALNIFEKLF 339
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 62.9 bits (152), Expect = 2e-11
Identities = 55/397 (13%), Positives = 111/397 (27%), Gaps = 43/397 (10%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHV 133
G + + ++ S + + A+G ++ + N LG D I A +
Sbjct: 23 GLF-KEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFG 78
Query: 134 SNMYYSI-----PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
I EL ++L A + ++ +AN + +
Sbjct: 79 MASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDA------- 131
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
+S + G +K + + + E A LI
Sbjct: 132 ----IISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLI------ 181
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ----CGLGRTGYLWAHEHY 304
+ + G L+ + D D AL++ D+ G G +
Sbjct: 182 --ATDGVFSMDG----VIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM 235
Query: 305 GIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364
G I GG G ++V + F+ S A ++
Sbjct: 236 GRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV 295
Query: 365 PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLV 424
A + ++ +Q A + + + + V A + G+ V
Sbjct: 296 EAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYV 355
Query: 425 L-----TAGKGNV-VRLVPPLIISEQELDQAVEILCK 455
KG +R + +++ +AVE +
Sbjct: 356 TGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTR 392
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 57.6 bits (137), Expect = 1e-09
Identities = 43/342 (12%), Positives = 81/342 (23%), Gaps = 29/342 (8%)
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFAR 176
+ + +T + Y A RL+ V F + GT+ N A A
Sbjct: 17 LDLMARDN--MTQHAG-YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL 73
Query: 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE 236
+ + + P
Sbjct: 74 RPWEAVIATQLGHISTHETGAIEA--------------TGHKVVTAPCPDGKLRVADIES 119
Query: 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
A + V TK+ L+ + +C + G L D + +
Sbjct: 120 ALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSS 179
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD-----HGSTFAGSPLV 351
+ I + + + G+ A L+
Sbjct: 180 PVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGWLL 239
Query: 352 CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411
++ A +K K L+ R L +E + A
Sbjct: 240 GIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIR--LAWPSASNQLFPILENTMIAE 297
Query: 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453
+ + + L G ++RL E+E + VE+L
Sbjct: 298 -LNNDFDMYTVEPLKDGTC-IMRLCTSWATEEKECHRFVEVL 337
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 51.3 bits (122), Expect = 1e-07
Identities = 44/344 (12%), Positives = 93/344 (27%), Gaps = 50/344 (14%)
Query: 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
+ ++ G A + P + T FH GA +
Sbjct: 90 FKHIVPTHQGRGAENLLSQL------AIKPGQYVAGNMY-FTTTRFHQEKNGATFVDIVR 142
Query: 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274
+P ++ + K A + + G + ++ + +
Sbjct: 143 DEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHE 202
Query: 275 ACDDAGALLVFDEVQC----------GLGRTGYLWAHEHYGIFP--DIMTLAKPLAGGLP 322
G + +D +C G + +F D T++ +
Sbjct: 203 MASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVN 262
Query: 323 IGAALVT------EKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-ISNPAFLASVSKKG 375
IG L + + ++ G A+A+ + ++ K+
Sbjct: 263 IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQV 322
Query: 376 HYFKETLKQKLAR-----------------NPHVKDV----RGLGLIIGIEFDVSATP-- 412
Y + L++ PH+ + L I +E V +
Sbjct: 323 RYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERG 382
Query: 413 VVDACRDSGLLVLTAGKGNVVRL-VPPLIISEQELDQAVEILCK 455
+V A R K VRL +P + + +D + + K
Sbjct: 383 IVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.98 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.98 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.97 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.96 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.96 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.96 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.96 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.96 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.96 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.96 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.96 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.95 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.95 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.95 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.95 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.95 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.94 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.94 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.93 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.93 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.93 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.93 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.91 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.91 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.89 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.89 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.88 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.87 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.87 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.87 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.87 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.86 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.86 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.86 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.86 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.84 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.84 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.84 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.82 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.81 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.79 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.79 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.75 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.75 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.73 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.72 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.71 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.7 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.67 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.66 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.64 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.64 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.64 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.63 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.63 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.63 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.6 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.59 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.55 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.53 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.52 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.52 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.49 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.48 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.46 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.44 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.4 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.33 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.25 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.25 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.24 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.11 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.02 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.98 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.95 |
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.8e-72 Score=556.79 Aligned_cols=396 Identities=33% Similarity=0.505 Sum_probs=361.1
Q ss_pred cchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC
Q 012368 60 RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139 (465)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~ 139 (465)
+.++++++++.+|.+++|+|+|++++||+|+|+||.|||+||||++++++++|||+||+|++|+.+|++++.+....+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~ 82 (404)
T d2byla1 3 PTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 82 (404)
T ss_dssp CCHHHHHHHHHHHBCSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTEEE
T ss_pred CcHHHHHHHHHHhccCCCCCCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999987655444455
Q ss_pred HHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012368 140 IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 140 ~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
....++++.+.+..+.++++|++||+||++.|+|+++.++....... ..+.+|+.++.+|||.+..+++.++.+..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~-~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~ 161 (404)
T d2byla1 83 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQ-KYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 161 (404)
T ss_dssp SSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC-TTCCEEEEETTCCCCCSHHHHTTCCCHHHHTT
T ss_pred chHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccc-cccccccccCCCccccccceeccCCCcccccC
Confidence 55777888888888899999999999999999999999885433211 24678999999999999999998888777777
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+.|..+++..+|++|++++++++..+++++||+||+++++|+++++++||++|+++|++||++||+|||++||||+|.+|
T Consensus 162 ~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~ 241 (404)
T d2byla1 162 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 241 (404)
T ss_dssp SCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccc
Confidence 78888899999999999999999877899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012368 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
+++++++.|||+|+||+++|| +|+|++++++++++.+.+..+++||++||++|+|+.++|+.++++++.++++++++++
T Consensus 242 a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l 321 (404)
T d2byla1 242 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIIL 321 (404)
T ss_dssp GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHH
Confidence 999999999999999999998 8999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCceeeeccceEEEEEec----CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 379 KETLKQKLARNPHVKDVRGLGLIIGIEFD----VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~----~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
++.|.++ ..+.+..+++.|+++.+++. ....++..+|+++||++.+.+. +++||+||+++|++|||+++++|+
T Consensus 322 ~~~l~~l--~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~-~~i~l~PpL~it~~~id~~~~~l~ 398 (404)
T d2byla1 322 RNELMKL--PSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHG-DIIRFAPPLVIKEDELRESIEIIN 398 (404)
T ss_dssp HHHHHTS--CTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEET-TEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHhh--ccccceeeeecccEEEEEEecCCchhHHHHHHHHHhCCeEEecCCC-CEEEEECCcCCCHHHHHHHHHHHH
Confidence 9999886 34578889999999999882 3466799999999999987654 799999999999999999999999
Q ss_pred HHHHH
Q 012368 455 KTLPV 459 (465)
Q Consensus 455 ~~l~~ 459 (465)
+++++
T Consensus 399 ~al~~ 403 (404)
T d2byla1 399 KTILS 403 (404)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-70 Score=544.36 Aligned_cols=382 Identities=40% Similarity=0.728 Sum_probs=350.8
Q ss_pred HHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHH
Q 012368 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 142 (465)
|++++.++.+....|.+.|++++|++|+|+||.|||+||||.+++++++|||+||+|.+|+.+++++..+.+..+.++..
T Consensus 2 ~~~~~~~~~~~~~~y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~ 81 (387)
T d1vefa1 2 RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMR 81 (387)
T ss_dssp HHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHH
T ss_pred hhHHhhhhhccCCCCCCCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCCchH
Confidence 56777777788888999999999999999999999999999999999999999999999999999987665555677888
Q ss_pred HHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 143 IELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 143 ~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
.++++++.+..+ .++++|++||+||++.|+|+|+.+++ +.+|+.++.+|||++..++++++.+.++.++
T Consensus 82 ~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~---------r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~ 152 (387)
T d1vefa1 82 GEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTG---------RKKFVAAMRGFSGRTMGSLSVTWEPKYREPF 152 (387)
T ss_dssp HHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHS---------CCEEEEETTCCCCSSHHHHHTCCCHHHHGGG
T ss_pred HHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcc---------cceecccccCCCCCccceEeccCCccccCCC
Confidence 899999988776 56899999999999999999999985 8899999999999999999998887766677
Q ss_pred CCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc
Q 012368 221 EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300 (465)
Q Consensus 221 ~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~ 300 (465)
.|....+.++|+||+++|++.++ +++++||+||+++++|+++++++|+++|+++|++||++||+|||+|||||+|.+++
T Consensus 153 ~p~~~~~~~~p~~d~~~l~~~~~-~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~ 231 (387)
T d1vefa1 153 LPLVEPVEFIPYNDVEALKRAVD-EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 231 (387)
T ss_dssp CSCSSCEEEECTTCHHHHHHHCC-TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred CCCCCCceEeCCCCHHHHHHhcC-CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcc
Confidence 77778888999999999999996 47999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 012368 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKE 380 (465)
Q Consensus 301 ~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~ 380 (465)
++++++.||++|+||+++||+|++++++++++++.+.+..+++||++||++|+|+.++|+.++++++++++++.++++++
T Consensus 232 ~~~~~v~PDi~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~ 311 (387)
T d1vefa1 232 FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFME 311 (387)
T ss_dssp HHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cccCCcCCceeeecccCCCCccccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999889999999999999999
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEecC-ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.|+++ ..+.+..+++.|++++++++. ....+.+.++++|+++.+.+. +.+|++||+++|++||++++++++++|
T Consensus 312 ~L~~l--~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~-~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 312 KLRAI--PSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGP-TVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp HHHTS--CCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhc--CCCceEEEeecceEEEEEEeCCchHHHHHHHHHCCCeEEecCC-CEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 99876 346788899999999999953 445677777899999887765 899999999999999999999999887
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-69 Score=542.56 Aligned_cols=375 Identities=36% Similarity=0.599 Sum_probs=329.3
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHhhcC---
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--- 154 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~--- 154 (465)
++|++++|++|+|+||.|||+||||++++++++|||+||+|++|+.+|++++.+.. ....++...+++++|.+..+
T Consensus 21 ~~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~ 100 (425)
T d1sffa_ 21 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDF 100 (425)
T ss_dssp SEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSS
T ss_pred CCCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcc
Confidence 57999999999999999999999999999999999999999999999999876543 33457778999999999986
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCc-eEeeCC
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV-NFVEYG 233 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 233 (465)
.++++|++||+||++.|+|+++.+|+ +.+||.++++|||++..++++++.......+.+..+.. ...+++
T Consensus 101 ~~~v~f~~sGseA~e~Alk~ar~~t~---------r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 171 (425)
T d1sffa_ 101 AKKTLLVTTGSEAVENAVKIARAATK---------RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYP 171 (425)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCC
T ss_pred cceeeeeccccchhhhHHHHhhhhhc---------ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCc
Confidence 57899999999999999999999985 88999999999999999998876554443333333322 222221
Q ss_pred -------------CHHHHHhh-cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012368 234 -------------NIEATRKL-IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 234 -------------d~~~le~~-l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+.+++... ...+++++||+||+++++|+++++++||+.|+++|++||++||+|||+|||||+|.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~ 251 (425)
T d1sffa_ 172 CPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF 251 (425)
T ss_dssp BGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhh
Confidence 01122222 2245799999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012368 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
+++++++.|||+|+||+++||+|+|++++++++++.+.+..+++||++||++|+|++++|+.++++++++++++.+++++
T Consensus 252 a~~~~gv~PDi~~~gK~l~gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~ 331 (425)
T d1sffa_ 252 AMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLK 331 (425)
T ss_dssp GGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCccceecccccCCCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEecC-------C---hHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHH
Q 012368 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDV-------S---ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-------~---~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~ 448 (465)
+.|++++++++.+..+++.|+++++++.. + ...+.+.|+++||++.+.+. ++.+||+||+++|++||++
T Consensus 332 ~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~ 411 (425)
T d1sffa_ 332 DGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQ 411 (425)
T ss_dssp HHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHH
T ss_pred hhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999999821 1 24688889999999988764 5889999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 012368 449 AVEILCKTLPVLDS 462 (465)
Q Consensus 449 ~l~~l~~~l~~~~~ 462 (465)
+++++++++++++|
T Consensus 412 ~l~~l~~al~eikk 425 (425)
T d1sffa_ 412 GLEIISQCFDEAKQ 425 (425)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999875
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=2.6e-68 Score=531.46 Aligned_cols=397 Identities=34% Similarity=0.570 Sum_probs=338.2
Q ss_pred hHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 012368 62 NKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141 (465)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~ 141 (465)
.+++++.+++|..++|.|.|++++|++|+|+||.|||+||||.+++++++|||+||+|++|+.+++.+..+.+..+.+..
T Consensus 3 ~~~~~~~~~~~~~~~y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~ 82 (404)
T d1z7da1 3 PEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVP 82 (404)
T ss_dssp HHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHH
T ss_pred HHHHHHHHHhcCCCCCCCCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccccchHH
Confidence 46788888899999999999999999999999999999999999999999999999999999999998765544444555
Q ss_pred HHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCC
Q 012368 142 QIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFE 221 (465)
Q Consensus 142 ~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 221 (465)
...+++.+.+..+.+.++|++||++|++.|+++++.++...... ...+.+++.+..+|||.+......++...++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~-~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~ 161 (404)
T d1z7da1 83 LGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKI-PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFG 161 (404)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCC-CTTCCEEEEETTC----------------------
T ss_pred HHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccc-cccccccccccccCCCCcccccccccccccccCCC
Confidence 66666667777789999999999999999999999887533211 12456899999999999999888887777666666
Q ss_pred CCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc
Q 012368 222 PVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301 (465)
Q Consensus 222 ~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~ 301 (465)
+..+.+..+|+++.++++..+.++++++||+||+++++|.++++++|+++|+++|++||++||+|||+|||||+|.+|++
T Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~ 241 (404)
T d1z7da1 162 PFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV 241 (404)
T ss_dssp ----CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG
T ss_pred CCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccc
Confidence 77778888999999999999987789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 012368 302 EHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKE 380 (465)
Q Consensus 302 ~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~ 380 (465)
+++++.|||+|+||+++|| +|+|++++++++++.+.+..+++||++||++|+|+.++|+.+.++++.+++.+.++++.+
T Consensus 242 e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~ 321 (404)
T d1z7da1 242 HHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLE 321 (404)
T ss_dssp GGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHH
Confidence 9999999999999999988 899999999999999998899999999999999999999999889999999999999999
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEec---CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 381 TLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.+.+++++++.+..+++.|+|+++++. ....++...|+++||++.+.+. +.+||+||+++|+++|++++++|++++
T Consensus 322 ~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~-~~ir~~Ppl~it~~~id~~~~~l~~al 400 (404)
T d1z7da1 322 NLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHD-KTIRLTPPLCITKEQLDECTEIIVKTV 400 (404)
T ss_dssp HHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETT-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCCC-CEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999994 3356789999999999988775 889999999999999999999999999
Q ss_pred HHh
Q 012368 458 PVL 460 (465)
Q Consensus 458 ~~~ 460 (465)
+++
T Consensus 401 k~~ 403 (404)
T d1z7da1 401 KFF 403 (404)
T ss_dssp HHH
T ss_pred Hhh
Confidence 876
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=6.7e-68 Score=531.87 Aligned_cols=396 Identities=23% Similarity=0.330 Sum_probs=344.4
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012368 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
.+|.++ |+.+.+.+|||++++.|.+ ..+++.|++++|++|+|+||.||++||||.++++++++||+||+|
T Consensus 4 ~~~~~~-~~~~~~~~~~g~~~~~~~~---------~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i 73 (427)
T d2gsaa_ 4 IKSDEI-FAAAQKLMPGGVSSPVRAF---------KSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEV 73 (427)
T ss_dssp HHHHHH-HHHHHHHSGGGSSSGGGCC---------TTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHH
T ss_pred hhHHHH-HHHHHhhcCCCCCCCcccc---------ccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHH
Confidence 567888 9999999999998887643 245678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012368 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
++|+.+++++..+ ...+......+++.+.+..+ .++++|++||+||++.|+|+|+.+|+ |++||.++.
T Consensus 74 ~~ai~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~---------r~~ii~~~~ 142 (427)
T d2gsaa_ 74 IEALKVAMEKGTS--FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTG---------RDKIIKFEG 142 (427)
T ss_dssp HHHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETT
T ss_pred HHHHHHHHHhcCc--cccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcC---------CCeEEEEec
Confidence 9999999988544 33456667889999988876 78999999999999999999999985 889999999
Q ss_pred CcccCccccccccCCCCcCCCC--CC-----CCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHH
Q 012368 199 SFHGRTMGALALTSKEHYRSPF--EP-----VMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
+|||.+.+++++++.......+ .+ ..+.....+++|+++++++++ ++++++||+||+++++|+++|+++||
T Consensus 143 ~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l 222 (427)
T d2gsaa_ 143 CYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFL 222 (427)
T ss_dssp CCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHH
T ss_pred ccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHH
Confidence 9999999998887653322111 11 113445678899999999998 46899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---CCCcCCCC
Q 012368 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGSTFA 346 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t~~ 346 (465)
++|+++|++||++||+|||++|| |+|.+++++++++.|||+++||+++||+|+|++++++++++.+.+ ..+++||+
T Consensus 223 ~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~ 301 (427)
T d2gsaa_ 223 EGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLS 301 (427)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTT
T ss_pred HHHHHHHHHhceeeeeccccccc-eecccchHHhcCCCHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCC
Confidence 99999999999999999999999 789999999999999999999999999999999999999998865 35789999
Q ss_pred ChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC------------C---hH
Q 012368 347 GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV------------S---AT 411 (465)
Q Consensus 347 ~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~------------~---~~ 411 (465)
+||++|+|++++|++++++++.++++++++++++.|+++.++++....+.+.|.++++.+.. + ..
T Consensus 302 gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~ 381 (427)
T d2gsaa_ 302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFS 381 (427)
T ss_dssp TCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHH
T ss_pred CCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHH
Confidence 99999999999999999999999999999999999999999998777777778888877610 1 13
Q ss_pred HHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+...|+++||++.|.+. .++.||+++|++|||+++++|+++++++
T Consensus 382 ~~~~~ll~~Gv~l~p~~~---~~~~~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 382 RFHRGMLEQGIYLAPSQF---EAGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp HHHHHHHHTTEECCSSTT---SCEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCEEECCCCC---cceeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 577789999999988654 2356899999999999999999998753
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=2.5e-66 Score=521.92 Aligned_cols=386 Identities=31% Similarity=0.498 Sum_probs=330.9
Q ss_pred HHHHHHhccccccCCC-ceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHH
Q 012368 65 VMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQI 143 (465)
Q Consensus 65 ~~~~~~~~~~~~~~~~-p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 143 (465)
+-+...++.++.+++. |++++|++|+||||.|||+||||.+++++++|||+||+|.+|+.+|+++..+....+.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~ 86 (431)
T d1zoda1 7 FWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVV 86 (431)
T ss_dssp HHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHH
T ss_pred HHHhhHHHhhccCCCCCCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccccccHHHH
Confidence 3344445566555554 999999999999999999999999999999999999999999999999987665667788899
Q ss_pred HHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCC
Q 012368 144 ELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFE 221 (465)
Q Consensus 144 ~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 221 (465)
+|+++|.+..+ .++|+|++||+||++.|+|+|+.+|+ |++|+.++++|||.+..++++++.... ..+.
T Consensus 87 ~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~---------r~~i~~~~~~yHG~t~~~~~~~~~~~~-~~~~ 156 (431)
T d1zoda1 87 DLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTG---------KYEIVGFAQSWHGMTGAAASATYSAGR-KGVG 156 (431)
T ss_dssp HHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHTCCSSCC-SSSC
T ss_pred HHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcC---------Ccceeecccccccccchhhcccccccc-cccC
Confidence 99999999874 79999999999999999999999985 889999999999999998887765432 2333
Q ss_pred CCCCCceEeeCC-----------------CHHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 012368 222 PVMPGVNFVEYG-----------------NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGA 281 (465)
Q Consensus 222 ~~~~~~~~~~~~-----------------d~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 281 (465)
+...+...++.. +++.++..+. ++++++||+||+++++|.++++++|+++|+++|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gi 236 (431)
T d1zoda1 157 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGM 236 (431)
T ss_dssp CCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC
T ss_pred CcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCc
Confidence 433443333221 1333333332 56899999999999999999999999999999999999
Q ss_pred EEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC--CCCcCCCCChHHHHHHHHHHH
Q 012368 282 LLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY--GDHGSTFAGSPLVCNAAIAVL 359 (465)
Q Consensus 282 llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~--~~~~~t~~~~~~~~~aa~a~L 359 (465)
+||+|||+|||||+|.+++++++++.||++|+||+++||+|++++++++++++.+.. ..+++||++||++|+|+.++|
T Consensus 237 llI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l 316 (431)
T d1zoda1 237 LLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVL 316 (431)
T ss_dssp EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHH
T ss_pred eEEeccccccccccccccccccCCCCcchhccccccccccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877643 357899999999999999999
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec----------CChHHHHHHHHHCCceEe---e
Q 012368 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD----------VSATPVVDACRDSGLLVL---T 426 (465)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~----------~~~~~~~~~l~~~Gv~v~---~ 426 (465)
++++++++++++.+.++++.+.+.+++.+++.+..+++.|+|+++++. ....++.+.|+++|++.. .
T Consensus 317 ~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~ 396 (431)
T d1zoda1 317 DVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQL 396 (431)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECC
T ss_pred HHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeee
Confidence 999899999999999999999999999999999999999999999882 114568899999998632 2
Q ss_pred cCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 427 AGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 427 ~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.++++|++||+++|++|||+++++|+++++++
T Consensus 397 ~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 397 PGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp TTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2335899999999999999999999999999875
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-65 Score=511.40 Aligned_cols=389 Identities=30% Similarity=0.483 Sum_probs=332.1
Q ss_pred HHHHHHhccccccC----CCceE-EEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 012368 65 VMEAEKKLLVGTYN----RAPVV-LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY 138 (465)
Q Consensus 65 ~~~~~~~~~~~~~~----~~p~~-~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~ 138 (465)
-+..+.++.+++|. +.|+. ++|++|+|+||.|||+||||.+++++++|||+||+|++|+.+|++++.+.. ..+.
T Consensus 5 ~~~~d~~h~~~p~~~~~~~~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~ 84 (429)
T d1s0aa_ 5 DLAFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGIT 84 (429)
T ss_dssp HHHHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEE
T ss_pred HHHHHHHhcCCCcccCCCCCCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCcc
Confidence 34456677888775 35664 899999999999999999999999999999999999999999999876542 3456
Q ss_pred CHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012368 139 SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
++...++++++.+..+ .++++|++||+||++.|+++++.++..++. ++.+||.++++|||.+.+++++++....
T Consensus 85 ~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~----~~~~ii~~~~~yHG~t~~a~~~t~~~~~ 160 (429)
T d1s0aa_ 85 HAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE----ARQRFLTFRNGYHGDTFGAMSVCDPDNS 160 (429)
T ss_dssp CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC----CCCEEEEETTCCCCSSHHHHTTSCTTTT
T ss_pred chHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccc----cccEEEEecCCccccchhhhhhcCCccc
Confidence 6778899999998875 789999999999999999999999865543 3678999999999999999888765433
Q ss_pred CCCCCC-CCCCce-----------EeeCCCHHHHHhhcC--CCCeEEEEEcccC-CCCCcccCCHHHHHHHHHHHHHhCC
Q 012368 217 RSPFEP-VMPGVN-----------FVEYGNIEATRKLIQ--PGKTAAVFVEPIQ-GEGGIYSATKEFLQFLRDACDDAGA 281 (465)
Q Consensus 217 ~~~~~~-~~~~~~-----------~~~~~d~~~le~~l~--~~~~a~vi~ep~~-~~~G~~~~~~~~l~~l~~l~~~~g~ 281 (465)
...+.+ ...... ..++++++++++.+. ++++++||+||++ +.||+.+++++|+++|+++|++||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gi 240 (429)
T d1s0aa_ 161 MHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240 (429)
T ss_dssp TGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTC
T ss_pred cccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCc
Confidence 322211 111111 122235666666665 5689999999987 6677888999999999999999999
Q ss_pred EEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-----CCcCCCCChHHHHHHH
Q 012368 282 LLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNAA 355 (465)
Q Consensus 282 llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~~aa 355 (465)
+||+|||++||||+|.+++++++++.||++|+||+++|| +|+|++++++++++.+.+. .+++||++||++|+|+
T Consensus 241 llI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa 320 (429)
T d1s0aa_ 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAA 320 (429)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHH
T ss_pred ceehhhccccccccccccccccceecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhh
Confidence 999999999999999999999999999999999999876 8999999999999887543 4789999999999999
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe--cCChHHHHHHHHHCCceEeecCCCCEE
Q 012368 356 IAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKGNVV 433 (465)
Q Consensus 356 ~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~--~~~~~~~~~~l~~~Gv~v~~~~~~~~l 433 (465)
.++|+.++++++.+++++.+++++++|+++ ...+.+..+++.|+|+.+++ +....++.+.|+++|+++.+.+ +.+
T Consensus 321 ~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l-~~~~~v~~vrg~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~g--~~i 397 (429)
T d1s0aa_ 321 NASLAILESGDWQQQVADIEVQLREQLAPA-RDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFG--KLI 397 (429)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHGGG-GGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCBT--TEE
T ss_pred hccccccccccccchhhHHHHHHHHHHHHh-ccCCceEEEeecccEEEEEecCcccHHHHHHHHHHCCcEEEecC--CEE
Confidence 999999999999999999999999999875 56788889999999999998 3557789999999999998865 799
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 434 RLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 434 Ri~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
||+||+++|++|||+++++|++++++.
T Consensus 398 ~~~Ppl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 398 YLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred EEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998764
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.2e-62 Score=497.57 Aligned_cols=392 Identities=25% Similarity=0.349 Sum_probs=319.7
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-----
Q 012368 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN----- 135 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~----- 135 (465)
.+++++++..++......++|++++||+|+|+||.|||+||||.+++++++|||+||+|.+|+.++++...+...
T Consensus 16 ~s~~l~~~~~~~~~~~~~~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~ 95 (461)
T d1ohwa_ 16 RSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 95 (461)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccc
Confidence 577888777766665555789999999999999999999999999999999999999999999998876543211
Q ss_pred CCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCC-----------------CCCCCCceEEEE
Q 012368 136 MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNP-----------------DSKEPATEFVSF 196 (465)
Q Consensus 136 ~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~-----------------~~~~~~~~ii~~ 196 (465)
..+....++|+++|.+..+ .++|+|++||+||++.|+|+|+.|+..++. ....++.+||.+
T Consensus 96 ~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~ 175 (461)
T d1ohwa_ 96 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSF 175 (461)
T ss_dssp SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEE
T ss_pred cchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEe
Confidence 1122335567777766654 789999999999999999999988642210 011246789999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-------------------CCHHHHHhhcC-----CCCeEEEEE
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------------------GNIEATRKLIQ-----PGKTAAVFV 252 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~d~~~le~~l~-----~~~~a~vi~ 252 (465)
.++|||.+.+++++++.+.++..+.+...... .|+ ++++++++++. .+++++||+
T Consensus 176 ~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAaviv 254 (461)
T d1ohwa_ 176 MGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI-APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIV 254 (461)
T ss_dssp TTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCE-ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCcCCCCcccccccCCcccccccccccCCcc-cccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeee
Confidence 99999999999999877654433322222111 110 12455666553 568999999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC--cccEEEecccCCCccceeeEEeCH
Q 012368 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLAKPLAGGLPIGAALVTE 330 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~--~pdi~t~sK~lg~G~~iG~v~~~~ 330 (465)
||+++++|+++++++|+++|+++|++||++||+|||++||||+|.+|+++++++ .||++|+||++++|.++..
T Consensus 255 EPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~g~~~~~----- 329 (461)
T d1ohwa_ 255 EPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHK----- 329 (461)
T ss_dssp CSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEEEC-----
T ss_pred ccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhhhcccccccccc-----
Confidence 999999999999999999999999999999999999999999999999999998 5999999999998643322
Q ss_pred HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-CceeeeccceEEEEEecC-
Q 012368 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKDVRGLGLIIGIEFDV- 408 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~- 408 (465)
+++....+..+.+||++||++++|+.++|+.++++++++++++++++++++|+++..++| .+..++|.|+|+++++..
T Consensus 330 ~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~~~~ 409 (461)
T d1ohwa_ 330 EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDE 409 (461)
T ss_dssp GGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSH
T ss_pred cccccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEEEEcCCH
Confidence 223334455788999999999999999999998899999999999999999999998886 678899999999999832
Q ss_pred -ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 409 -SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 409 -~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
...++...|+++||++.+.+. +++||.||+++|++|+++++++|+++|++
T Consensus 410 ~~~~~i~~~~~~~Gll~~~~~~-~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 410 SIRNKLISIARNKGVMLGGCGD-KSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp HHHHHHHHHHHHTTEECEEETT-TEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCeEEeeCCC-CEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 245788999999999998775 89999999999999999999999999976
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-38 Score=316.07 Aligned_cols=344 Identities=15% Similarity=0.147 Sum_probs=259.0
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccCCC-----CCHHHHHHHHHHHhh
Q 012368 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSNMY-----YSIPQIELAKRLVAC 152 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~ 152 (465)
+...++++++|+++||.||++||||+|+.+ ||+ +||+|++|+.+++++++.++... ..+...+|+++|+++
T Consensus 26 r~~~~i~~~~g~~v~~~dG~~~l~f~s~dY---LGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~ 102 (401)
T d1fc4a_ 26 KEERIITSAQQADITVADGSHVINFCANNY---LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAF 102 (401)
T ss_dssp CCCCCBCSCSSSEEEBTTSCEEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHH
T ss_pred CcceeccCCCCCeEEecCCCEEEEEEcccc---ccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHh
Confidence 445578899999999999999999999765 787 59999999999998865433222 456688999999999
Q ss_pred cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC
Q 012368 153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 153 ~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
++.+.++++|||++|+..+++.+. + +++. |+.+...|.+....+..+. ..+..+++
T Consensus 103 ~g~e~al~~~SG~~An~~~i~~l~---~--------~~d~-i~~d~~~h~s~~~G~~~~~------------a~~~~~~~ 158 (401)
T d1fc4a_ 103 LGMEDAILYSSCFDANGGLFETLL---G--------AEDA-IISDALNHASIIDGVRLCK------------AKRYRYAN 158 (401)
T ss_dssp HTCSEEEEESCHHHHHHTTHHHHC---C--------TTCE-EEEETTCCHHHHHHHHTSC------------SEEEEECT
T ss_pred hcCCceEEecchhhhhHHHHHHhc---C--------CCcE-EEeCCcchHHHHccccccC------------ceEEEEcC
Confidence 999999999999999999998654 1 3454 4555555655544333221 23445678
Q ss_pred CCHHHHHhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--cccccccC
Q 012368 233 GNIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHYG 305 (465)
Q Consensus 233 ~d~~~le~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~~~~ 305 (465)
+|.++++++++ ....++|++|+++++.|.+.| |++|+++|++||++||+||+|+++ ..|. .+..++++
T Consensus 159 ~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g-~~g~~G~G~~~~~~ 233 (401)
T d1fc4a_ 159 NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVG-FVGENGRGSHEYCD 233 (401)
T ss_dssp TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTT-TSSTTSCCHHHHTT
T ss_pred CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccc-cccCCCCccchhcc
Confidence 88888888764 345689999999999998877 999999999999999999999853 4443 22455666
Q ss_pred C--cccEE--EecccCCCccceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHH
Q 012368 306 I--FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYF 378 (465)
Q Consensus 306 ~--~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l 378 (465)
+ .+|++ |+||+++ |.+.|++.+++++++.+.... +..+.+.+|...+|+.++++.+. .+++.++++++.+++
T Consensus 234 ~~~~~dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~ 312 (401)
T d1fc4a_ 234 VMGRVDIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQF 312 (401)
T ss_dssp CTTCCSEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHH
Confidence 5 35655 7899995 556799999999998886322 22344567888888888888764 467889999999999
Q ss_pred HHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHH
Q 012368 379 KETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l 450 (465)
++.+.+. ..+ .....+.++.+.+. ..+..+.+.|+++||++.+... ...+|++++..+|++|||+++
T Consensus 313 ~~~l~~~--g~~---~~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v 387 (401)
T d1fc4a_ 313 REQMSAA--GFT---LAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAV 387 (401)
T ss_dssp HHHHHHT--TCC---BCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHH
T ss_pred Hhhhccc--CCc---cCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHH
Confidence 8888765 121 12223445555552 2345789999999999875432 145999999999999999999
Q ss_pred HHHHHHHHHh
Q 012368 451 EILCKTLPVL 460 (465)
Q Consensus 451 ~~l~~~l~~~ 460 (465)
++|+++.+++
T Consensus 388 ~al~ev~~~l 397 (401)
T d1fc4a_ 388 EAFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-35 Score=286.24 Aligned_cols=337 Identities=19% Similarity=0.167 Sum_probs=252.2
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhccccc-----CCCCCHHHHHHHHHHHhhc
Q 012368 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-----NMYYSIPQIELAKRLVACS 153 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~ 153 (465)
.+..+.+++|.++. .||++||||+++.+ ||. .||+|++++.+++++++.++ ..+..+.+.+|+++|++++
T Consensus 21 ~~~~~~~~~g~~i~-~~g~~~l~f~s~dY---LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~ 96 (383)
T d1bs0a_ 21 RRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL 96 (383)
T ss_dssp CCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCeEE-ECCeEEEEEEcccc---cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc
Confidence 34556799999996 89999999999876 786 69999999999999864321 1235677899999999999
Q ss_pred CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC
Q 012368 154 FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG 233 (465)
Q Consensus 154 ~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (465)
+.+.+++++||+.|+..++.... .+..+++.+...|.+.......+. ..+..++++
T Consensus 97 g~e~al~~~SG~~an~~~i~al~------------~~~d~v~~d~~~h~si~~g~~~~~------------~~~~~~~hn 152 (383)
T d1bs0a_ 97 GYSRALLFISGFAANQAVIAAMM------------AKEDRIAADRLSHASLLEAASLSP------------SQLRRFAHN 152 (383)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHC------------CTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECTT
T ss_pred CCCceEEecccchhhHHHHHhhc------------CCCceEEeeccccHHHhhccccCC------------CcceEecch
Confidence 99999999999999999998654 255567777778877765543322 335568899
Q ss_pred CHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--cccccccCCccc
Q 012368 234 NIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHYGIFPD 309 (465)
Q Consensus 234 d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~~~~~~pd 309 (465)
|++++++.+. ..+..+|++|.++++.|.+.| +++|.++|++||++||+||+|+ +|..|. .+..+++++.++
T Consensus 153 d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~gv~G~~g~G~~~~~~~~~~ 227 (383)
T d1bs0a_ 153 DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-TGVIGEQGRGSCWLQKVKPE 227 (383)
T ss_dssp CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSSGGGCCHHHHTTCCCS
T ss_pred HHHHHHHHhcccCCCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeeccee-eeecCCcccchHHHcCCccc
Confidence 9999999986 345789999999999999887 9999999999999999999997 444443 224577788777
Q ss_pred EE--EecccCCCccceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHH
Q 012368 310 IM--TLAKPLAGGLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYFKETL 382 (465)
Q Consensus 310 i~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l 382 (465)
++ ++||++| ...|++.++.++++.++.. ....+...+|..++|+.++++.++.. ...+++.++..++++.|
T Consensus 228 ~~~~t~~ka~g--~~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l 305 (383)
T d1bs0a_ 228 LLVVTFGKGFG--VSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGV 305 (383)
T ss_dssp EEEEESSSTTS--SCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccc--ccccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 76 4667665 4668999999998888642 23344456788888888898877553 34455556666665555
Q ss_pred HHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 383 KQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 383 ~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
.+ .+. ....+...++.+.+. ..+.++.+.|+++||++.+... ...+|++++..+|++|||+++++|+
T Consensus 306 ~~----~g~-~~~~~~s~Ii~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~ 380 (383)
T d1bs0a_ 306 QD----LPF-TLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLH 380 (383)
T ss_dssp TT----SSC-EECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHH
T ss_pred Hh----cCC-ccCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 43 332 122333444444442 2355789999999999875321 1469999999999999999999987
Q ss_pred HH
Q 012368 455 KT 456 (465)
Q Consensus 455 ~~ 456 (465)
.+
T Consensus 381 ~~ 382 (383)
T d1bs0a_ 381 GN 382 (383)
T ss_dssp HH
T ss_pred hc
Confidence 63
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.6e-32 Score=265.39 Aligned_cols=338 Identities=17% Similarity=0.120 Sum_probs=228.6
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|+++|||..|.+. |. .+|.|++|+.+++++..+.+ ..+..+.++++++++.+..+ +++|++|+|+++|+.
T Consensus 29 ~G~~vi~l~~g~p~--~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~ 105 (382)
T d1b5pa_ 29 QGVDLVALTAGEPD--FD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (382)
T ss_dssp TTCCCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCCCCC--CC-CCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHH
Confidence 56778999888653 33 67899999999887643321 22233446777777766654 689999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
.+++... ++++.|++.+|+|+++...+...+...... +..+...+. .|+++++++++++..+.
T Consensus 106 ~~~~~l~-----------~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v----~~~~~~~~~--~d~~~l~~~~~~~~~~i 168 (382)
T d1b5pa_ 106 NLFQAIL-----------DPGDEVIVLSPYWVSYPEMVRFAGGVVVEV----ETLPEEGFV--PDPERVRRAITPRTKAL 168 (382)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEEEE----ECCGGGTTC--CCHHHHHTTCCTTEEEE
T ss_pred HHHHHhC-----------CCCCEEEECCCCcHHHHHHHHHhcCeEEEE----ecccccccC--CCHHHHHHhCCCCCeEE
Confidence 9988665 268999999999998875554443221111 111111111 28999999998655567
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccc--ccCCcccEEEecccCC-CccceeeE
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE--HYGIFPDIMTLAKPLA-GGLPIGAA 326 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~--~~~~~pdi~t~sK~lg-~G~~iG~v 326 (465)
++++|.||+| .+++++.+++|.++|++||++||.||+|.++.+.+...... ..+...-+.++||.++ .|+|+||+
T Consensus 169 ~~~~P~NPTG--~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~ 246 (382)
T d1b5pa_ 169 VVNSPNNPTG--AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYA 246 (382)
T ss_dssp EEESSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEE
T ss_pred EECCCCCCcc--hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEE
Confidence 7788877666 45699999999999999999999999999986656432221 1122233457899998 69999999
Q ss_pred EeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEE
Q 012368 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI-SNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~ 405 (465)
++++++++.+.......+.+.+.+.+.++.+++... ....+.+..++..+..++.+.+.+...+.....+..|.++|++
T Consensus 247 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg~~~~~~ 326 (382)
T d1b5pa_ 247 CGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMD 326 (382)
T ss_dssp ECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEE
T ss_pred EECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCceEEEeEe
Confidence 999999887754333445556666666666555422 1233333444433333444444444434322233446778888
Q ss_pred ec---CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 406 FD---VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 406 ~~---~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+. .+...+.+.|+++||.+.|+. ..+++|+++ ..+++++++++++|.+++
T Consensus 327 ~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~--~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 327 TSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENLRKALERFARVL 382 (382)
T ss_dssp CTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHGGGGC
T ss_pred CCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEE--cCCHHHHHHHHHHHHHhC
Confidence 83 356778899999999999863 247899976 458899999999998753
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.98 E-value=3.6e-31 Score=261.66 Aligned_cols=339 Identities=15% Similarity=0.078 Sum_probs=234.2
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|+++|||..|.+ .+. .+|.|++|+.++++...+. ...+..+.++++++++.+.++ +++|++|+|+++|+.
T Consensus 28 ~g~~vi~l~~G~p--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~ 104 (388)
T d1j32a_ 28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHH
Confidence 4567899988865 233 6788999999988764322 112223346777777776655 688999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
.+++.+. ++++.|++.+|+|.++...+...++..... +...+..+- .|++++++.++++...+
T Consensus 105 ~~~~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~----~~~~~~~~~--~d~~~l~~~~~~~~~~~ 167 (388)
T d1j32a_ 105 NLMLAMI-----------EPGDEVIIPAPFWVSYPEMVKLAEGTPVIL----PTTVETQFK--VSPEQIRQAITPKTKLL 167 (388)
T ss_dssp HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHTTCEEEEE----CCCGGGTTC--CCHHHHHHHCCTTEEEE
T ss_pred HHHHHHh-----------CCCCEEEEcCCCcHHHHHHHHHhcCeEEEE----ecccccccC--CCHHHHHHhCCCCCeEE
Confidence 9988654 268999999999988875544333322111 111111000 28999999998766667
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccc-----cCCcccEEEecccCC-Cccc
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH-----YGIFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~-----~~~~pdi~t~sK~lg-~G~~ 322 (465)
++++|.||+| .+++.+.+++|.++|++||++||+||+|..+...+... .... .+...-+.+|||.++ .|+|
T Consensus 168 ~~~~P~NPTG--~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlR 245 (388)
T d1j32a_ 168 VFNTPSNPTG--MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR 245 (388)
T ss_dssp EEESSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTC
T ss_pred EECCCCCCCC--cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhH
Confidence 7888876665 44689999999999999999999999998775544321 1111 112233457999998 6999
Q ss_pred eeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceE
Q 012368 323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLI 401 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~ 401 (465)
+||+++++++++.+.........+.+..++.++...+... +++.++.++..+..++.+.+.+.+++.+....+. |.+
T Consensus 246 vG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~ 323 (388)
T d1j32a_ 246 VGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFY 323 (388)
T ss_dssp CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTE
T ss_pred eEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccch--HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEE
Confidence 9999999999887754333455667788888887777632 3444444444444444455555555544444444 566
Q ss_pred EEEEec---CChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 402 IGIEFD---VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 402 ~~i~~~---~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+|++++ .+..++++.|+ ++||.+.|+. ..+++|+++. .+++++++++++|+++++.+
T Consensus 324 l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~--~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 324 MFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp ECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHHh
Confidence 777763 45667888876 5699999863 2478999764 68999999999999999875
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.98 E-value=1.7e-30 Score=254.40 Aligned_cols=337 Identities=17% Similarity=0.185 Sum_probs=247.6
Q ss_pred eEEEeeeccEE------EeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHH
Q 012368 82 VVLASGKGCKL------YDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRL 149 (465)
Q Consensus 82 ~~~~~~~G~~~------~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l 149 (465)
..+.+..|.+. .+.+++++++|+|+.+ ||. .||+++++..+++++++.++. .+..+.+.+|+++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndY---LGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~l 99 (396)
T d2bwna1 23 IDIEREKGAFPKAQWNRPDGGKQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEI 99 (396)
T ss_dssp CEEEECTTSTTEEEEECTTSCEEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHH
T ss_pred cccccccCCCCcceEeecCCCCeEEEEEEcccc---cCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHH
Confidence 44667777532 2235689999999877 776 899999999999998644321 23456789999999
Q ss_pred HhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceE
Q 012368 150 VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF 229 (465)
Q Consensus 150 ~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (465)
+++++.+..++++||..||..++..+... .++.+|+.+...|.+....+.+++ ..+..
T Consensus 100 A~~~g~e~all~~sG~~An~~~i~~l~~~----------~~~d~i~~D~~~Hasi~~g~~ls~------------a~~~~ 157 (396)
T d2bwna1 100 AGLHQKEAALVFSSAYNANDATLSTLRVL----------FPGLIIYSDSLNHASMIEGIKRNA------------GPKRI 157 (396)
T ss_dssp HHHTTCSEEEEESCHHHHHHHHHHHHHHH----------STTCEEEEETTCCHHHHHHHHHSC------------CCEEE
T ss_pred HHHhCCCceeeeecchHHHHHHHHHHhcc----------cCCCceeehhhhhhccchhhhccc------------cCceE
Confidence 99999999999999999999999866421 245688888888887766555443 23455
Q ss_pred eeCCCHHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---ccccccc
Q 012368 230 VEYGNIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLWAHEH 303 (465)
Q Consensus 230 ~~~~d~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g---~~~~~~~ 303 (465)
+++||+++++++++ +.....|++|.++++.|.+.| |++|.++|++||++|++||+|+ ||..| .+ ..++
T Consensus 158 f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs-~Gv~G~~G~G-~~~~ 231 (396)
T d2bwna1 158 FRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHA-VGMYGPRGAG-VAER 231 (396)
T ss_dssp ECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSSTTSCC-HHHH
T ss_pred eecchHHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeecccee-eeeecccccc-chhh
Confidence 78899999988875 445678999999999999988 9999999999999999999996 55544 44 3445
Q ss_pred cCCc--ccEE--EecccCCCccceeeEEeCHHHHhhccCCCCcCCC--CChHHHHHHHHHHHHHhcCc---hHHHHHHHH
Q 012368 304 YGIF--PDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTF--AGSPLVCNAAIAVLDKISNP---AFLASVSKK 374 (465)
Q Consensus 304 ~~~~--pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~--~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~ 374 (465)
+++. .|++ ||||++|+ ..|++.+++++++.+........| +.+|...+++.++++.+..+ ...++++.+
T Consensus 232 ~~~~~~~di~~gTlsKa~g~--~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~ 309 (396)
T d2bwna1 232 DGLMHRIDIFNGTLAKAYGV--FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMH 309 (396)
T ss_dssp HTCGGGCSEEEEESSSTTCS--CCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cCCceeeeeeeecccccccc--cccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 5542 3555 79999985 237889999999988643323333 35677788888889887543 345566677
Q ss_pred HHHHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHH-HCCceEeecCC------CCEEEEecCCCCcHHH
Q 012368 375 GHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACR-DSGLLVLTAGK------GNVVRLVPPLIISEQE 445 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~-~~Gv~v~~~~~------~~~lRi~~~~~~t~e~ 445 (465)
.+++++.+.++ .++.. .....++.+.+. ..+.++++.|+ ++||++.+..+ ...+||+++..||++|
T Consensus 310 ~~~~~~~l~~~--g~~~~---~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~ed 384 (396)
T d2bwna1 310 AKVLKMRLKAL--GMPII---DHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQ 384 (396)
T ss_dssp HHHHHHHHHHH--TCCBC---CCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHH
T ss_pred HHHHHHHHHhc--CCCcC---CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHH
Confidence 78888877665 33321 223445555553 23456777766 68999875421 2569999999999999
Q ss_pred HHHHHHHHHHH
Q 012368 446 LDQAVEILCKT 456 (465)
Q Consensus 446 i~~~l~~l~~~ 456 (465)
||+++++|+++
T Consensus 385 Id~l~~~L~~i 395 (396)
T d2bwna1 385 IDGLVHAMDLL 395 (396)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999874
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=1.1e-30 Score=258.22 Aligned_cols=340 Identities=12% Similarity=0.073 Sum_probs=227.6
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~ 170 (465)
+.+|||..|.+ .++ .++.|++++.+++++.... ...+..+.++++++++.+..+ .++|++|+|+++++..
T Consensus 25 ~dvi~l~~g~p--~~~-~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~ 101 (388)
T d1gdea_ 25 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 101 (388)
T ss_dssp TTCEECCCCSC--CSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHH
Confidence 34788887765 344 5788999999998763221 112223446666666655432 5689999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
+++.+. .+++.|++.+|+|.++...+...+...... +......+ .-|+++|+++++++...++
T Consensus 102 ~~~~l~-----------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~----~~~~~~~~--~~d~~~l~~~~~~~~~~i~ 164 (388)
T d1gdea_ 102 GLSAFL-----------KDGEEVLIPTPAFVSYAPAVILAGGKPVEV----PTYEEDEF--RLNVDELKKYVTDKTRALI 164 (388)
T ss_dssp HHTTTC-----------CTTCEEEEEESCCTTHHHHHHHHTCEEEEE----ECCGGGTT--CCCHHHHHHHCCTTEEEEE
T ss_pred HHHHhc-----------CCCCEEEECCCCcHHHHHHHHHcCCEEEEe----ecccccCC--CCCHHHHHHhCccCCeEEE
Confidence 888654 268999999999998876655444322111 11110000 0289999999986556677
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-ccccc-CCc---ccEEEecccCC-Ccccee
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-GIF---PDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~-~~~---pdi~t~sK~lg-~G~~iG 324 (465)
+++|.||+| ...+++.+++|.++|++||++||+||+|.+|...+... ..... +.. ..+.+|||.++ .|+|+|
T Consensus 165 ~~~P~NPtG--~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G 242 (388)
T d1gdea_ 165 INSPCNPTG--AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 242 (388)
T ss_dssp EESSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred ECCCcCCCC--CcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEE
Confidence 777877665 45689999999999999999999999999875444321 11111 222 22447999998 699999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i 404 (465)
|+++++++++.+.........+.+.+.+.++.++++........++.++..++.+..+.+.+...+.....+..|.|+|+
T Consensus 243 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl~~ 322 (388)
T d1gdea_ 243 FVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFP 322 (388)
T ss_dssp EEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECC
T ss_pred EEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceEEEEE
Confidence 99999998887765444555667777777777777522112223333333333334444444444433333444678888
Q ss_pred Eec---CChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 405 EFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 405 ~~~---~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+++ .+..++++.|+ ++||.+.|+. ..+++|+++ ..+++++++++++|++++++.+
T Consensus 323 ~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~--~~~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 323 RIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISY--ATAYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp BCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEEC--CSCHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHHhcC
Confidence 773 45778888876 5699998863 147899976 4688999999999999998754
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.96 E-value=5.6e-29 Score=242.95 Aligned_cols=323 Identities=15% Similarity=0.139 Sum_probs=218.1
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
.++|||++| .+++| .+|.+++++.+.+..... |++....+|++.++++++ .++|++++|+++++..++...
T Consensus 22 ~~~idls~~--~np~~-~p~~~~~a~~~~~~~~~~----Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~ 94 (355)
T d1lc5a_ 22 DQLLDFSAN--INPLG-MPVSVKRALIDNLDCIER----YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL 94 (355)
T ss_dssp GGSEECSSC--CCTTC-CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH
T ss_pred hheEEccCC--CCCCC-CCHHHHHHHHHHHHHhcc----CCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhh
Confidence 357999886 45788 578899999988766432 444444578888888887 678999999999888766543
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEccc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI 255 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~ 255 (465)
. ++.+++..|.|+.+.............. ++..... +...+++++.+.++...+++++|+
T Consensus 95 ~-------------~~~~~v~~p~~~~~~~~~~~~~~~~~~v----~~~~~~~---~~~~~~~~~~~~~~~~~v~l~nP~ 154 (355)
T d1lc5a_ 95 K-------------PRRAMIVTPGFAEYGRALAQSGCEIRRW----SLREADG---WQLTDAILEALTPDLDCLFLCTPN 154 (355)
T ss_dssp C-------------CSEEEEEESCCTHHHHHHHHTTCEEEEE----ECCGGGT---TCCCTTHHHHCCTTCCEEEEESSC
T ss_pred c-------------cccccccCCccceeccccccccccceee----eeeccCC---ccceeeeeeccccccceeeeeccc
Confidence 2 5566778888876654433332211100 1111100 112244566666555566777776
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc--ccccCCcccEEEecccCC-CccceeeEEeCHH-
Q 012368 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA--HEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK- 331 (465)
Q Consensus 256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~--~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~- 331 (465)
|++|. ..+.+.+++|.++|++|++++|.||+|..|...+.... ....+....+.++||+++ +|+|+||++++++
T Consensus 155 NPtG~--~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~ 232 (355)
T d1lc5a_ 155 NPTGL--LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDA 232 (355)
T ss_dssp TTTCC--CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHH
T ss_pred Ccccc--cchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchh
Confidence 66653 45899999999999999999999999988755443221 111222334558999999 6999999999755
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012368 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+.+.+. .+..+++.+.+++.++.++|+ +.++..+.++....-++.+.+.+.+.+.+...++.|.|+++.++.+..
T Consensus 233 ~~~~~~--~~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~f~~~~~~~~~~ 307 (355)
T d1lc5a_ 233 AMARMR--RQQMPWSVNALAALAGEVALQ---DSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCEREDI 307 (355)
T ss_dssp HHHHHH--HHSCTTCSCHHHHHHHHHGGG---CHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEEEESCTTC
T ss_pred hhHHHH--hhcCCcccccccccccccccc---ccchhHHHHHHHHHHHHHHHHHHhhcCCcEECCCCCEEEEEECCCCHH
Confidence 445444 234557788899988888876 333333333333333344444455566565566778889998876677
Q ss_pred HHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 412 PVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++++.|+++||+++++.. .+++||+++ +++|+++++++|+++|
T Consensus 308 ~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 308 DLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp CHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 899999999999987531 478999854 7899999999998764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=1.1e-28 Score=244.20 Aligned_cols=340 Identities=15% Similarity=0.077 Sum_probs=228.5
Q ss_pred CCCEEEecccCcccc-cCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012368 96 EGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 96 dG~~ylD~~~~~~~~-~lGh~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
+|+++|++..|.+.. .|. .++.+++|+.++++...+. ...+..+.++++++++.+.++ .++|++++|+++++
T Consensus 28 ~G~~vi~l~~G~P~~~df~-~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~ 106 (395)
T d1xi9a_ 28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEAL 106 (395)
T ss_dssp TTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred CCCCeEECCCCCCCCCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhh
Confidence 578899998876432 232 6678999999998764321 222233446777777777665 67899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
.++++... .+++.|++.+|+|+.+...+...+...... +......+. .|++++++.+.++...
T Consensus 107 ~~~~~~~~-----------~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v----~~~~~~~~~--~d~~~~~~~~~~~~~~ 169 (395)
T d1xi9a_ 107 QLIFGALL-----------DPGDEILVPGPSYPPYTGLVKFYGGKPVEY----RTIEEEDWQ--PDIDDIRKKITDRTKA 169 (395)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTTCEEEEE----EEEGGGTSE--ECHHHHHHHCCTTEEE
T ss_pred hhhhhhhc-----------CCCCEEEEcCCccccchhhhhhcCCEEEEE----ecccccccc--chHHHHHHhhcccccE
Confidence 99888665 268999999999998876555444322111 100000011 1889999999866667
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc---cccCCcccEEEecccCCC-cccee
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH---EHYGIFPDIMTLAKPLAG-GLPIG 324 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~---~~~~~~pdi~t~sK~lg~-G~~iG 324 (465)
+++++|.||+| .+.+.+.+++|.++|++||+++|.||+|..+.+.+..... .......-+.+|||.++. |+|+|
T Consensus 170 v~l~~P~NPTG--~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG 247 (395)
T d1xi9a_ 170 IAVINPNNPTG--ALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLG 247 (395)
T ss_dssp EEEESSCTTTC--CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCE
T ss_pred EEecCCCCCcc--chhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcE
Confidence 78888877666 4569999999999999999999999999886544432211 111222334479999995 99999
Q ss_pred eEEeC--HHHHhhccC---CCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-
Q 012368 325 AALVT--EKVASAINY---GDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL- 398 (465)
Q Consensus 325 ~v~~~--~~i~~~~~~---~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 398 (465)
|+++. ...+..+.. .....+++.+.+++.++..+++. .+++.+++++..+..++.+.+.+.+.+......+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g 325 (395)
T d1xi9a_ 248 YMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG--PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQG 325 (395)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCB
T ss_pred eeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCe
Confidence 98653 222221111 01223455677788888887763 34555555555555556666666666654444333
Q ss_pred ceEEEEEec----CChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 399 GLIIGIEFD----VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 399 g~~~~i~~~----~~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
|.++|++++ .+..+++..|+ ++||.+.|+. . .+++||++ ..+++++++++++|.+++++
T Consensus 326 g~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~--~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 326 AFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVF--LPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp SSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEEC--CSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHhc
Confidence 677787773 34667777766 5699998863 1 36799975 56899999999999999875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.96 E-value=1.2e-28 Score=243.94 Aligned_cols=341 Identities=13% Similarity=0.072 Sum_probs=221.2
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~a 171 (465)
.|+.+|+|..+.+ .|. .+|.|++|+.++++...+.+..+..+.++++++++.+.++ .++|++|+|+++|+..+
T Consensus 29 ~g~~vi~l~~g~p--df~-~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~ 105 (394)
T d1c7na_ 29 VGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNA 105 (394)
T ss_dssp CCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhh
Confidence 4677888887765 233 6899999999998874443333333457777777777665 78999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe-EEE
Q 012368 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT-AAV 250 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-a~v 250 (465)
+++.. .+++.|++.+|.|.++.......+...... +.. ..+.... .|.+.++.++...++ ..+
T Consensus 106 ~~~~~-----------~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~-~~~--~~~~~~~--~d~~~~~~~~~~~~~~~i~ 169 (394)
T d1c7na_ 106 VREFT-----------KPGDGVIIITPVYYPFFMAIKNQERKIIEC-ELL--EKDGYYT--IDFQKLEKLSKDKNNKALL 169 (394)
T ss_dssp HHHHC-----------CTTCEEEECSSCCTHHHHHHHTTTCEEEEC-CCE--EETTEEE--CCHHHHHHHHTCTTEEEEE
T ss_pred hcccc-----------ccccccccccCcccchhhHHhhhhhccccc-ccc--ccccccc--chhhhhhhhhccccceEEE
Confidence 98665 278999999999988876555444332211 000 0111111 277888887764344 566
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc---ccc---cCCcccEEEecccCC-Cccce
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA---HEH---YGIFPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~---~~~---~~~~pdi~t~sK~lg-~G~~i 323 (465)
+++|+||+| .+++++.+++|.++|++||++||+||+|.++-..+.... ... ......+.++||.++ .|+|+
T Consensus 170 l~~P~NPTG--~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~ 247 (394)
T d1c7na_ 170 FCSPHNPVG--RVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM 247 (394)
T ss_dssp EESSBTTTT--BCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC
T ss_pred ecccccccc--eeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccccccc
Confidence 677766665 456999999999999999999999999998754443211 111 122233446899998 49999
Q ss_pred eeEEeCH-HHHhhccCCCCcCCCC-ChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CCCceeeecc-c
Q 012368 324 GAALVTE-KVASAINYGDHGSTFA-GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NPHVKDVRGL-G 399 (465)
Q Consensus 324 G~v~~~~-~i~~~~~~~~~~~t~~-~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~-g 399 (465)
||+++++ .+.+.+.......+.+ .....++++...... .+++.+.+++..+..++.+.+.++. .+.+....+. |
T Consensus 248 g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~ 325 (394)
T d1c7na_ 248 SNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE--CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGT 325 (394)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBS
T ss_pred ccccccChhhhhhhhhhhhhccccccccccchhhhhhhcc--hhhhhcccccccchhhhhhhhhhhccccceeecCCCce
Confidence 9988764 5655554322222222 233333443333332 2344444444444444444444433 2233333333 5
Q ss_pred eEEEEEec---CChHHHHHHHHHC-CceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 400 LIIGIEFD---VSATPVVDACRDS-GLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 400 ~~~~i~~~---~~~~~~~~~l~~~-Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++|++++ .+..++++.|+++ ||.+.|+. . .+++||++ ..++++|++++++|++++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~--~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 326 YLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINL--AAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp SEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEE--eCCHHHHHHHHHHHHHHHHhcC
Confidence 56778773 4678899998866 99998852 1 36899975 4688999999999999999875
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.96 E-value=1.6e-27 Score=237.78 Aligned_cols=340 Identities=16% Similarity=0.117 Sum_probs=227.8
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccc-----cCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-----SNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANE 169 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-----~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~ 169 (465)
.||+..|.+. + ..++.+++|+.++++..... ...+..+.++++++++.+.++ .++|++|+|+++|+.
T Consensus 28 ~I~L~~G~Pd--~-~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~ 104 (418)
T d2r5ea1 28 PLNLGQGFPD--Y-HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 104 (418)
T ss_dssp CEECSSSCCS--S-CCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CEEccCCCCC--C-CCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence 4787777652 2 25678999999988653211 112233447778888887665 478999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceE---eeCCCHHHHHhhcCCCC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF---VEYGNIEATRKLIQPGK 246 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~le~~l~~~~ 246 (465)
.+++.+. .+++.|++.+|+|+++.......+...... +..+....... ....+.+.+++......
T Consensus 105 ~~~~~l~-----------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (418)
T d2r5ea1 105 ATIQGHV-----------DEGDEVIIIEPFFDCYEPMVKAAGGIPRFI-PLKPNKTGGTISSADWVLDNNELEALFNEKT 172 (418)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECEESCCSSCEEGGGEECCHHHHHHHCCTTE
T ss_pred hhhhhcc-----------ccccceeccccccchhhHHHHHcCCeEEEE-EecccccccchhhhhhhhhHHHHhhhhhccc
Confidence 9998765 279999999999998876555444332211 01111011000 00126788888876544
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc--ccccccCCc---ccEEEecccCC-Cc
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL--WAHEHYGIF---PDIMTLAKPLA-GG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~--~~~~~~~~~---pdi~t~sK~lg-~G 320 (465)
...++++|+|++|. .++++.+++|.++|++||+++|.||+|..+...+.. ......+.. ..+.++||.++ .|
T Consensus 173 ~~~~i~~p~NPtG~--~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pG 250 (418)
T d2r5ea1 173 KMIIINTPHNPLGK--VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG 250 (418)
T ss_dssp EEEEEESSCTTTCC--CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG
T ss_pred cceecCCcCccccc--cccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCC
Confidence 45555666666653 458999999999999999999999999887444421 111222222 23347899998 69
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHh----c-CchHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI----S-NPAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~----~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
+|+||+++++++++.+.......+++.+.+.+.++.+.+... + .+.+++++++..+..++.+.+.+.+.+.....
T Consensus 251 lRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~ 330 (418)
T d2r5ea1 251 WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTV 330 (418)
T ss_dssp GCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCCcccC
Confidence 999999999999888765444556667777777766665432 1 14566666666666666666666666544444
Q ss_pred eccceEEEEEec--------------CChHHHHHHHHH-CCceEeecCC----------CCEEEEecCCCCcHHHHHHHH
Q 012368 396 RGLGLIIGIEFD--------------VSATPVVDACRD-SGLLVLTAGK----------GNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 396 ~~~g~~~~i~~~--------------~~~~~~~~~l~~-~Gv~v~~~~~----------~~~lRi~~~~~~t~e~i~~~l 450 (465)
+..|.|+|+++. .+..+|++.|++ .||.+.|+.. .+++||++ ..++++|++++
T Consensus 331 P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~--~~~~e~l~~a~ 408 (418)
T d2r5ea1 331 PQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF--FKKDENLQKAA 408 (418)
T ss_dssp CSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEEC--CSCHHHHHHHH
T ss_pred CCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEe--cCCHHHHHHHH
Confidence 555777788762 234678888875 5999988621 26799976 45899999999
Q ss_pred HHHHHHHH
Q 012368 451 EILCKTLP 458 (465)
Q Consensus 451 ~~l~~~l~ 458 (465)
++|++++.
T Consensus 409 ~rl~~~lg 416 (418)
T d2r5ea1 409 EILRKWKG 416 (418)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998764
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=2.2e-28 Score=239.87 Aligned_cols=328 Identities=15% Similarity=0.089 Sum_probs=226.3
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH-HHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHH
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~ 176 (465)
.||++.|.+. ++ .+|.+++|+.+.+.+.. .|++. ...+|++.++++++ .++|++|+|+++|+..+++.+.
T Consensus 27 ~I~ls~g~p~--~~-~p~~i~~al~~~l~~~~----~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~ 99 (368)
T d1v2da_ 27 AVNLGQGFPS--NP-PPPFLLEAVRRALGRQD----QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (368)
T ss_dssp CEECCCCSCS--SC-CCHHHHHHHHHHTTTSC----SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CEEecCCCCC--CC-CCHHHHHHHHHHhhccc----CCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc
Confidence 4888777552 22 67889999999876532 23222 25678888888887 7899999999999999988654
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEeeCCCHHHHHhhcCCCCeEEEEEccc
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFVEYGNIEATRKLIQPGKTAAVFVEPI 255 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~ 255 (465)
.+++.|++.+|+|+.+.......+...... +.. ..... ..|++.+++++++....+++++|.
T Consensus 100 -----------~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~~--~~d~~~l~~~~~~~~~~i~~~~p~ 162 (368)
T d1v2da_ 100 -----------GPGDEVVVLEPFFDVYLPDAFLAGAKARLV----RLDLTPEGF--RLDLSALEKALTPRTRALLLNTPM 162 (368)
T ss_dssp -----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE----ECEEETTEE--ECCHHHHHTTCCTTEEEEEEESSC
T ss_pred -----------cccccccccCCcchhhhhHHHhcCCcccee----ccccccccc--cCCHHHHHHhhccCceEEEEcCCC
Confidence 268899999999987775554433221111 100 00011 138999999998766667778887
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc--ccccCCcccEEEecccCCC-ccceeeEEeCHHH
Q 012368 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA--HEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKV 332 (465)
Q Consensus 256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~--~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i 332 (465)
|++| ...+.+.+++|.++|++||+++|.||+|..+........ ....+....+.++||.++. |+|+||+++++++
T Consensus 163 NPtG--~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~ 240 (368)
T d1v2da_ 163 NPTG--LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (368)
T ss_dssp TTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred Cccc--ccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccc
Confidence 6665 456899999999999999999999999976533332211 1112223345578888875 8999999999998
Q ss_pred HhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHH
Q 012368 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATP 412 (465)
Q Consensus 333 ~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~ 412 (465)
++.+.......+.+.+++.+.++.+++......++.+++++..+..++.+.+.+.+++.....+..|.++|+.++. ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~--~~ 318 (368)
T d1v2da_ 241 MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG--WD 318 (368)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTT--CC
T ss_pred cchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCc--cH
Confidence 8877654455567778888888888887654455666665555555555666556665433333346778888742 22
Q ss_pred HHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 413 VVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
..+.|.++||.+.|+. ..+++||++ ..+++++++++++|++++
T Consensus 319 ~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~--~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 319 AFRLVEEARVALIPASAFYLEDPPKDLFRFAF--CKTEEELHLALERLGRVV 368 (368)
T ss_dssp HHHHHHHTCEECEEGGGGCSSSCCTTEEEEEC--CSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCEEEEechhhCCCCCCCCEEEEEe--cCCHHHHHHHHHHHHHhC
Confidence 3445678999998752 137899975 468999999999999864
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=6.2e-28 Score=237.26 Aligned_cols=334 Identities=17% Similarity=0.140 Sum_probs=223.2
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
.|+++||+..|.+. +. .++.+++++.+.+....+. ...+..+.++++++++.+..+ .++|++|+|+++|+.
T Consensus 26 ~G~~vI~l~~G~p~--~~-~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~ 102 (375)
T d1o4sa_ 26 KGEDVINLTAGEPD--FP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 102 (375)
T ss_dssp TTCCCEECCCSSCS--SC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCcCCC--CC-CCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHH
Confidence 46678999888663 33 5788999999988764322 112233446677777766554 789999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
.+++++. ++++.|++.+|+|..+.......+...... +........ .|.+.++....+.....
T Consensus 103 ~~~~~l~-----------~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~ 165 (375)
T d1o4sa_ 103 NAFMALL-----------DPGDEVIVFSPVWVSYIPQIILAGGTVNVV----ETFMSKNFQ--PSLEEVEGLLVGKTKAV 165 (375)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE----ECCGGGTTC--CCHHHHHHTCCTTEEEE
T ss_pred HHHHHHh-----------CCCCEEEEccCccccchhhhhccccccccc----ccccccccc--chhHHHHHhhccCccEE
Confidence 9888665 268899999999987765544332211110 000111111 26788888877655667
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc----ccccCCcccEEEecccCC-Ccccee
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA----HEHYGIFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~----~~~~~~~pdi~t~sK~lg-~G~~iG 324 (465)
++++|.||+| ...+.+.+++|.++|++|+++||.||+|..+...+.... .+.++...-+.++||.++ .|+|+|
T Consensus 166 ~l~nP~NPTG--~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G 243 (375)
T d1o4sa_ 166 LINSPNNPTG--VVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVG 243 (375)
T ss_dssp EEESSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCE
T ss_pred EEeCCCCCcc--CCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccc
Confidence 7788866665 345899999999999999999999999987644332211 122333445568999999 699999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i 404 (465)
|+++++++++.+.......+...+...+.++...++.. .....+.++++.+.+.+.|++ .+.....+..|.|+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~----~g~~~~~p~gg~f~~~ 318 (375)
T d1o4sa_ 244 YLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKK----MGVKFVEPEGAFYLFF 318 (375)
T ss_dssp EEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHH----TTCCCCCCSBSSEEEE
T ss_pred cccccccchhhhhhhhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHh----cCceEecCCccEEEEE
Confidence 99999998877754333333444455555444433321 233444555555555555544 3322222334677888
Q ss_pred EecCChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 405 EFDVSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 405 ~~~~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+++.+..+++..|+ ++||++.|+. ..+++||++ ..+++++++++++|+++++
T Consensus 319 ~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~--~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 319 KVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSF--ATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp ECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHhCCEEEEEccccCCCCeEEEEE--cCCHHHHHHHHHHHHHHhc
Confidence 88667778888866 5799999864 247899976 4589999999999999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.96 E-value=7.5e-28 Score=238.95 Aligned_cols=337 Identities=12% Similarity=0.101 Sum_probs=216.6
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhc-----ccccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVL-----THVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
++|+|..|.+...+ .+.+.+.+++.+.++.. .++...+..+.++++++++.+.++ .++|++|+|+++++.
T Consensus 30 ~~i~l~~G~P~~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~ 108 (403)
T d1wsta1 30 DVISLAGGLPAPET-FPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALD 108 (403)
T ss_dssp SCEECCCCCCCGGG-SCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHH
T ss_pred CcEECCCCCCCccc-cCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHH
Confidence 36788776553221 23446777777766542 122223334457778888876654 789999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC----CHHH----HHhh
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG----NIEA----TRKL 241 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~----le~~ 241 (465)
.+++++. .+++.|++.+|+|..+...+...+.. +..++.+ +... .++.
T Consensus 109 ~~~~~l~-----------~~gd~v~~~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~~~~~~~~~~ 164 (403)
T d1wsta1 109 LIGRVFL-----------NPGDPIVVEAPTYLAAIQAFKYYDPE-------------FISIPLDDKGMRVDLLEEKLEEL 164 (403)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTTCCE-------------EEEEEEETTEECHHHHHHHHHHH
T ss_pred HHHHHHh-----------hcCCccccCCCcchhhhHHHhhcccc-------------ceeEeecccCCccccccccchhh
Confidence 9998654 26899999999998887655433321 1122221 1211 1122
Q ss_pred cC-CCCeEEEE--EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc----cccccCCcccEEEec
Q 012368 242 IQ-PGKTAAVF--VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW----AHEHYGIFPDIMTLA 314 (465)
Q Consensus 242 l~-~~~~a~vi--~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~----~~~~~~~~pdi~t~s 314 (465)
.. ......++ +.|.|++| .+.+.+.+++|.++|++||++||+||+|.+|.+.+... ..+.++....+.++|
T Consensus 165 ~~~~~~~~~~~~~~~p~NPtG--~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~S 242 (403)
T d1wsta1 165 RKQGKRVKIVYTVSTFQNPAG--VTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFS 242 (403)
T ss_dssp HHTTCCCCEEEECCSSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEEST
T ss_pred hhccccccccccccccCCCCC--ccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccc
Confidence 21 11222333 33444443 45699999999999999999999999999886555422 122233344456899
Q ss_pred ccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcC---CC
Q 012368 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARN---PH 391 (465)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~ 391 (465)
|.++.|+|+||+++++++++.+.......+.+.+...+.+..+.+.....+.+.+++++.....++.+.+.+.+. ..
T Consensus 243 K~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 322 (403)
T d1wsta1 243 KILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGV 322 (403)
T ss_dssp TTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred ceecCcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCe
Confidence 999889999999999999887754333344556677776666665543333444444444433333333333221 12
Q ss_pred ceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 392 VKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
....+..|.++|++++ .+...+++.|.++||.+.|+. ..+++||+++. .+++++++++++|.+++++..+
T Consensus 323 ~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~~~k 401 (403)
T d1wsta1 323 EWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAETIKEEMK 401 (403)
T ss_dssp EECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCceeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 2233445778888884 356778999999999998862 13689998754 5899999999999999987655
Q ss_pred c
Q 012368 463 N 463 (465)
Q Consensus 463 ~ 463 (465)
+
T Consensus 402 ~ 402 (403)
T d1wsta1 402 R 402 (403)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=7.1e-28 Score=240.46 Aligned_cols=343 Identities=12% Similarity=0.095 Sum_probs=228.8
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-----cccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-----HVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGT 165 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~ 165 (465)
.+..+|||..|.+...+ ...+.+.+++.+.++... +....+..+.++++++++.+.++ .++|++|+|++
T Consensus 36 ~~~~~I~l~~G~Pd~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~ 114 (420)
T d1vp4a_ 36 ADKDAISFGGGVPDPET-FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 114 (420)
T ss_dssp TSTTCEECCCCSCCGGG-SCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCCcEecCCcCCCCcc-CCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence 45668999887653222 134556777777665421 22222333447777777776654 67899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----CCHHHHHhh
Q 012368 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKL 241 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~ 241 (465)
+|+..++.+.. .+++.|++.+|+|..+.......+.. +..+|. .|++.++..
T Consensus 115 ~al~~~~~~~~-----------~~Gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~l~~~ 170 (420)
T d1vp4a_ 115 QALDLIGKLFL-----------DDESYCVLDDPAYLGAINAFRQYLAN-------------FVVVPLEDDGMDLNVLERK 170 (420)
T ss_dssp HHHHHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTTTCE-------------EEEEEEETTEECHHHHHHH
T ss_pred hhHHHHHHhhh-----------ccccccccccccccchhHHHHHHhhh-------------cccccccccccccchhhhh
Confidence 99999888654 27899999999998876554433321 111221 145554433
Q ss_pred c-------CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc----cccccCCcccE
Q 012368 242 I-------QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW----AHEHYGIFPDI 310 (465)
Q Consensus 242 l-------~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~----~~~~~~~~pdi 310 (465)
+ ...++..+++.|.++|++....+.+.+++|.++|++|++++|+||+|.+|.+.+... .....+...-+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~ 250 (420)
T d1vp4a_ 171 LSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLL 250 (420)
T ss_dssp HHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEE
T ss_pred hhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEE
Confidence 2 112344444444333322245699999999999999999999999999886555421 11122333333
Q ss_pred EEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHH
Q 012368 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN----PAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 311 ~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~----~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
.++||.++.|+|+||+++++++++.+.......+.+.+.+.++++...++.... .+..+.+++..+.+.+.|++.+
T Consensus 251 ~s~sk~~~~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 330 (420)
T d1vp4a_ 251 NTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF 330 (420)
T ss_dssp EESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eccccccccccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhh
Confidence 457787777999999999999998886544444556677788777777764321 2345566667777777777776
Q ss_pred HcCCCceeeecc-ceEEEEEec--CChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 387 ARNPHVKDVRGL-GLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 387 ~~~~~~~~~~~~-g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
...+.+....+. |.|+|++++ .+..++++.|.++||.+.|+. ..+++|++++ ..+++++++++++|+++
T Consensus 331 ~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~ 409 (420)
T d1vp4a_ 331 SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRLREV 409 (420)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHH
T ss_pred ccCCCcEEecCCceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHH
Confidence 666555544444 567888884 356678889999999998862 1368999865 35789999999999999
Q ss_pred HHHhhhcC
Q 012368 457 LPVLDSNS 464 (465)
Q Consensus 457 l~~~~~~~ 464 (465)
+++..+++
T Consensus 410 l~~~~~~~ 417 (420)
T d1vp4a_ 410 VLEYGKEK 417 (420)
T ss_dssp HHHHHHHT
T ss_pred HHHhhHhh
Confidence 99987764
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.95 E-value=1e-26 Score=231.43 Aligned_cols=342 Identities=13% Similarity=0.073 Sum_probs=219.9
Q ss_pred CCCEEEecccCcccccCC-CCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhc----------CCCeEEec
Q 012368 96 EGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACS----------FADRVFFS 161 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lG-h~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~----------~~~~v~~~ 161 (465)
.++.+||+..|.+..... ...+.+++++.+.+.... +....+..+.++++++++.+.+ .+++|++|
T Consensus 28 ~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it 107 (412)
T d1bw0a_ 28 SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC 107 (412)
T ss_dssp SCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred CCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEe
Confidence 445678888776532222 134667888887766422 1112223344777788777653 16799999
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhh
Q 012368 162 NTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKL 241 (465)
Q Consensus 162 ~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 241 (465)
+|+++|+..+++++. .+++.|++.+|+|+++...+...+...... ++.....+. .+++++++.
T Consensus 108 ~G~~~al~~~~~~l~-----------~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v----~~~~~~~~~--~~~~~l~~~ 170 (412)
T d1bw0a_ 108 SGGSHGILMAITAIC-----------DAGDYALVPQPGFPHYETVCKAYGIGMHFY----NCRPENDWE--ADLDEIRRL 170 (412)
T ss_dssp SHHHHHHHHHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEEEE----EEEGGGTTE--ECHHHHHHH
T ss_pred cccccchhhhhhhhh-----------ccccceeeeeccchhhhhhhhccCcccccc----ccccccccc--hhhHHHHhh
Confidence 999999999988664 278999999999998876654444322111 111111111 278999998
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccc-cc---cCCccc---EEEe
Q 012368 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAH-EH---YGIFPD---IMTL 313 (465)
Q Consensus 242 l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~-~~---~~~~pd---i~t~ 313 (465)
+.+.....++++|.|++|. ..+.+.+++|.++|++|+++||+||+|.+|.+.|.. ... .. ...... +.++
T Consensus 171 ~~~~~~~~~l~np~NPtG~--~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 248 (412)
T d1bw0a_ 171 KDDKTKLLIVTNPSNPCGS--NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGT 248 (412)
T ss_dssp CCTTEEEEEEESSCTTTCC--CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred hhccccccccccccccccc--cchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccccccccccccccc
Confidence 8766666777888877764 458999999999999999999999999988665531 111 11 111111 2358
Q ss_pred cccCCC-ccceeeEEeCHHHH------hhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 012368 314 AKPLAG-GLPIGAALVTEKVA------SAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 314 sK~lg~-G~~iG~v~~~~~i~------~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
||.++. |+|+||+++++... ..... ....+.+.+++.++++.+.+.. ..+++.+++++.....++.+.+.+
T Consensus 249 SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~l 326 (412)
T d1bw0a_ 249 AKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR-VGMLVCGPCTVVQAALGEALLN-TPQEHLDQIVAKIEESAMYLYNHI 326 (412)
T ss_dssp TTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH-HHHHHTCSCHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccCCCCcccccccchhhcchhhhhhhcc-ccccccCCchhhhhhccccccc-ccccccccccchhHHHHHHHHHHH
Confidence 999985 99999999864322 22211 1122233444555544444432 223455555555555566666665
Q ss_pred HcCCCceeee-ccceEEEEEec-------CChHHHHHHHHH-CCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 387 ARNPHVKDVR-GLGLIIGIEFD-------VSATPVVDACRD-SGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 387 ~~~~~~~~~~-~~g~~~~i~~~-------~~~~~~~~~l~~-~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
.+.+.+.... ..|.++|+.++ .+..+++++|++ .||.+.|+. ..+++||++ +.+++++++++++|+
T Consensus 327 ~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~--~~~~e~l~eal~Rl~ 404 (412)
T d1bw0a_ 327 GECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERIK 404 (412)
T ss_dssp TTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHH
T ss_pred HHhcCceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEE--cCCHHHHHHHHHHHH
Confidence 5554444443 34566777763 256788998876 599999863 247899975 568999999999999
Q ss_pred HHHHHh
Q 012368 455 KTLPVL 460 (465)
Q Consensus 455 ~~l~~~ 460 (465)
+++++.
T Consensus 405 ~~l~~~ 410 (412)
T d1bw0a_ 405 AFCQRH 410 (412)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998764
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.4e-27 Score=232.79 Aligned_cols=341 Identities=13% Similarity=0.076 Sum_probs=227.1
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcc----cccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT----HVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEAN 168 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~ 168 (465)
..+||+..|.+. +. .++.+++|+.+++.... +....+..+.++++++++.+.++ .++|++|+|+++|+
T Consensus 25 ~dvI~l~~G~p~--~~-~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al 101 (418)
T d1w7la_ 25 HDVVNLGQGFPD--FP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 101 (418)
T ss_dssp SCCEECCCCSCS--SC-CCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCCEECCCCCCC--CC-CCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHH
Confidence 347898888752 32 46789999999886421 11112223446777777777665 24799999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEee----CCCHHHHHhhcC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVE----YGNIEATRKLIQ 243 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~d~~~le~~l~ 243 (465)
..+++.+. .+++.|++.+|+|+.+...+...+....... ..+.... ..... ..|.+++.....
T Consensus 102 ~~~~~~l~-----------~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 169 (418)
T d1w7la_ 102 FTAFQALV-----------DEGDEVIIIEPFFDCYEPMTMMAGGRPVFVS-LKPGPIQNGELGSSSNWQLDPMELAGKFT 169 (418)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEE-CEECC---CCSEEGGGEECCHHHHHHHCC
T ss_pred HHHHHhhc-----------cCCceeeccccccchhHHHHHHcCCEeeccc-cccccccccccccccCcccchhhhhcccc
Confidence 99988665 2689999999999988765554443322111 0110000 00000 025677777776
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccc-cccCC---cccEEEecccCC
Q 012368 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAH-EHYGI---FPDIMTLAKPLA 318 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~-~~~~~---~pdi~t~sK~lg 318 (465)
+.....++++|+|++| ...+++.+++|.++|++|++++|.||+|.++.+.+.. ... ...+. ..-+.++||.++
T Consensus 170 ~~~~~i~~~~p~NPtG--~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 247 (418)
T d1w7la_ 170 SRTKALVLNTPNNPLG--KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFS 247 (418)
T ss_dssp TTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT
T ss_pred ccccceeccCcCCccc--ccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCcccc
Confidence 5445556666666665 3458999999999999999999999999998655531 111 11122 233447899998
Q ss_pred -CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc---C--chHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 319 -GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---N--PAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 319 -~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
.|+|+||+++++++++.+.......+++.+.+++.++.++|.... + .++..+.++..+..++.+.+.+.+.+..
T Consensus 248 ~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~ 327 (418)
T d1w7la_ 248 ATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLK 327 (418)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCCc
Confidence 499999999999998887654455667778888888887776421 1 3455555665566666666666666543
Q ss_pred eeeeccceEEEEEec---------------CChHHHHHHHH-HCCceEeecC----------CCCEEEEecCCCCcHHHH
Q 012368 393 KDVRGLGLIIGIEFD---------------VSATPVVDACR-DSGLLVLTAG----------KGNVVRLVPPLIISEQEL 446 (465)
Q Consensus 393 ~~~~~~g~~~~i~~~---------------~~~~~~~~~l~-~~Gv~v~~~~----------~~~~lRi~~~~~~t~e~i 446 (465)
...+..|.|+|++++ ....++++.|+ ++||.+.|+. ..+++||++ +.+++++
T Consensus 328 ~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~--~~~~~~l 405 (418)
T d1w7la_ 328 PLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCF--VKDEATL 405 (418)
T ss_dssp EEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEEC--CCCHHHH
T ss_pred ccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEE--cCCHHHH
Confidence 334445777888762 12456777766 5699998862 136899975 5689999
Q ss_pred HHHHHHHHHHH
Q 012368 447 DQAVEILCKTL 457 (465)
Q Consensus 447 ~~~l~~l~~~l 457 (465)
++++++|++..
T Consensus 406 ~~a~~rl~~~~ 416 (418)
T d1w7la_ 406 QAMDEKLRKWK 416 (418)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.2e-26 Score=223.75 Aligned_cols=335 Identities=11% Similarity=0.086 Sum_probs=208.4
Q ss_pred EecccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHH
Q 012368 101 LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 101 lD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a 175 (465)
|+|..+.. -|. .+|.|++|+.+.+....+.+.. ...+.++++++++.+.++ +++|++|+|+++++..+++.+
T Consensus 2 ~~~~~~~~--df~-~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l 78 (361)
T d1d2fa_ 2 LPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW 78 (361)
T ss_dssp EECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS
T ss_pred cCcCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc
Confidence 56665544 243 6799999999988764332221 223457778888877765 689999999999999988865
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE-EEcc
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV-FVEP 254 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v-i~ep 254 (465)
. +++++|++.+|+|.++.......+...... ..... .+.. . .|++.+++.+...+++++ +++|
T Consensus 79 ~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v-~~~~~-~~~~-~--~d~~~~~~~~~~~~~~~i~l~~p 142 (361)
T d1d2fa_ 79 S-----------ETGEGVVIHTPAYDAFYKAIEGNQRTVMPV-ALEKQ-ADGW-F--CDMGKLEAVLAKPECKIMLLCSP 142 (361)
T ss_dssp S-----------CTTCEEEEEESCCHHHHHHHHHTTCEEEEE-ECEEC-SSSE-E--CCHHHHHHHHTSTTEEEEEEESS
T ss_pred c-----------ccccccccccccccchhHHHHhhcceEEee-ccccc-cccc-c--cccccchhhcccCCceeEEeccc
Confidence 4 268999999999988765443332221100 00000 1111 1 389999999975555544 5555
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-ccccc--CCcccEEEecccCC-CccceeeEEeCH
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY--GIFPDIMTLAKPLA-GGLPIGAALVTE 330 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~--~~~pdi~t~sK~lg-~G~~iG~v~~~~ 330 (465)
+|++| ..++.+.+++|.++|+++|++||+||+|.+|.+.+... ..... +....+.++||.++ +|+|+||++...
T Consensus 143 ~NPTG--~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~ 220 (361)
T d1d2fa_ 143 QNPTG--KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIEN 220 (361)
T ss_dssp CTTTC--CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECS
T ss_pred ccccc--cccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecch
Confidence 55544 34588889999999999999999999999875444321 11111 11223345789998 489999987653
Q ss_pred -HHHhhc-cCC-CCcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEE
Q 012368 331 -KVASAI-NYG-DHGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGI 404 (465)
Q Consensus 331 -~i~~~~-~~~-~~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i 404 (465)
...+.. ... ......+.+...+.++..+++.... +.....++++.+.+.+.+.+.+ +.+... +..|.++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~~~~p~gg~~~~~ 297 (361)
T d1d2fa_ 221 SSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAF---PELNWQIPQSTYLAWL 297 (361)
T ss_dssp HHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC---SSCCCCCCSBCSEEEE
T ss_pred hHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhc---ccccccccCceeEEEE
Confidence 222222 111 1122223445556665555553211 1223333334444444443332 222222 233667788
Q ss_pred Eec---CChHHHHHHHHHC-CceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 405 EFD---VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 405 ~~~---~~~~~~~~~l~~~-Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++. .+..+++++|+++ ||.+.|+.. .+++|+++ ..+++++++++++|.+++++++
T Consensus 298 ~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~--~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 298 DLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNA--GCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp ECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHC
T ss_pred EccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHHhcC
Confidence 873 4778899998765 999987621 36899975 4688999999999999998874
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=1e-26 Score=229.64 Aligned_cols=337 Identities=15% Similarity=0.127 Sum_probs=222.2
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
+|..+||+..|.+. +. .++.+++++.+.......+ ...+..+.++++++++.+.++ +++|++|+|+++++..
T Consensus 26 ~g~~vi~l~~G~p~--~~-~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~ 102 (389)
T d2gb3a1 26 RGVRIHHLNIGQPD--LK-TPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILF 102 (389)
T ss_dssp TTCEEEECSSCCCC--SC-CCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHH
T ss_pred cCCCEEECCCCCCC--CC-CCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccc
Confidence 57788999887663 22 4677888887754432222 122233446778888877655 7899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
++++.. ++++.|++.+|+|..+.......+...... +....... .+.+.+...+.+.....+
T Consensus 103 ~~~~l~-----------~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~ 164 (389)
T d2gb3a1 103 SFAVIA-----------NPGDEILVLEPFYANYNAFAKIAGVKLIPV----TRRMEEGF---AIPQNLESFINERTKGIV 164 (389)
T ss_dssp HHHHHC-----------CTTCEEEEEESCCTHHHHHHHHHTCEEEEE----ECCGGGTS---CCCTTGGGGCCTTEEEEE
T ss_pred cccccc-----------cCCCeEEEeCCCCccccccccccCcccccc----cccccccc---chhhhhhhhcccCccEEE
Confidence 888665 268899999999987765544433221110 00000000 123445555555445566
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccccc--CCcccEEEecccCCC-ccceeeEE
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY--GIFPDIMTLAKPLAG-GLPIGAAL 327 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~--~~~pdi~t~sK~lg~-G~~iG~v~ 327 (465)
+++|.|++|. ..+.+.+++|.++|++||++||.||+|..+...+........ +...-+.++||.++. |+|+||++
T Consensus 165 l~nP~NPtG~--~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~ 242 (389)
T d2gb3a1 165 LSNPCNPTGV--VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLI 242 (389)
T ss_dssp EESSCTTTCC--CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred eCCCCccccc--cchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeee
Confidence 6777666653 458999999999999999999999999988665543222221 112223467899885 89999999
Q ss_pred eCHH-HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee-eeccceEEEEE
Q 012368 328 VTEK-VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD-VRGLGLIIGIE 405 (465)
Q Consensus 328 ~~~~-i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~i~ 405 (465)
++.+ +...+.. .....++.+++.+.++.+.+.. .+.+.+++++..+..++.+.+.+.+++.... .+..|.++|++
T Consensus 243 ~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~ 319 (389)
T d2gb3a1 243 TRNEELISHAMK-LAQGRLAPPLLEQIGSVGLLNL--DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAE 319 (389)
T ss_dssp CSCHHHHHHHHH-HHHHSCCCCHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEE
T ss_pred ccchhHHHHHhh-hhhccccccccccccccccccc--cchhcccccccccccchhhhhhhhhhccccccCCCceEEEEEe
Confidence 9664 4433322 2334556677777777776642 3455566666655566666666666664433 34557788888
Q ss_pred ec-CChHHHHHHHHHC------CceEeecC-------C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 406 FD-VSATPVVDACRDS------GLLVLTAG-------K-GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 406 ~~-~~~~~~~~~l~~~------Gv~v~~~~-------~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++ .++.++++.|+++ ||.+.|+. . .+++||++ +.+++++++++++|.++++++
T Consensus 320 lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~--~~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 320 LPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIAC--VLEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp CSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHHHh
Confidence 84 4678899988764 66776652 1 36899975 568999999999999999875
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=4.2e-26 Score=224.57 Aligned_cols=331 Identities=13% Similarity=0.066 Sum_probs=230.1
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEA 170 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~ 170 (465)
+..||++.|.+. +. .|+.+++++.+.+.+..+. ...+..+.++.+++++.+.++ .+ +|++|+|+++|+..
T Consensus 26 ~~~i~l~~G~Pd--~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 102 (382)
T d1u08a_ 26 HQAINLSQGFPD--FD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 102 (382)
T ss_dssp TTCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCCEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHH
Confidence 356899888773 33 5778999999988764322 222333457778888877665 44 59999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012368 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
+++++. ++++.|++.+|+|+.+.......+...... +...... ..|++++++.+.++...++
T Consensus 103 ~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~---~~d~~~l~~~~~~~~~~i~ 164 (382)
T d1u08a_ 103 AITALV-----------RNGDEVICFDPSYDSYAPAIALSGGIVKRM----ALQPPHF---RVDWQEFAALLSERTRLVI 164 (382)
T ss_dssp HHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE----ECCTTTC---CCCHHHHHHHCCTTEEEEE
T ss_pred HHhhcc-----------cccceEEEecccccchhhhhhhccccceec----ccccccc---cCCHHHHhhhhccCccEEE
Confidence 998665 268999999999988776554443221111 1111111 1388999999986555677
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cc----cccCCcccEEEecccCC-Ccccee
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH----EHYGIFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~----~~~~~~pdi~t~sK~lg-~G~~iG 324 (465)
+++|+|++|. +.+.+.+++|.++|++++++++.||+|..+...+... .. ...+...-+.++||.++ .|+|+|
T Consensus 165 l~~P~NPtG~--v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG 242 (382)
T d1u08a_ 165 LNTPHNPSAT--VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVG 242 (382)
T ss_dssp EESSCTTTCC--CCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCE
T ss_pred ECCCCccccc--ccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccch
Confidence 7778777764 4588999999999999999999999987653333211 11 11122233457899998 599999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEE
Q 012368 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i 404 (465)
|+++++++++.+.......+++.+.+.+.++.++++.. +++.+++++..+..++.+.+.+...+.....+..|.++|+
T Consensus 243 ~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~ 320 (382)
T d1u08a_ 243 YCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLV 320 (382)
T ss_dssp EEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEE
T ss_pred hhhccchhHHHHHhhhcccccccccccccccccccccc--hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceEEEEE
Confidence 99999999887765444556778889999999888753 4555566666655566666655544443333444677888
Q ss_pred Eec----CChHHHHHHHH-HCCceEeecC------C-CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 405 EFD----VSATPVVDACR-DSGLLVLTAG------K-GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 405 ~~~----~~~~~~~~~l~-~~Gv~v~~~~------~-~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
.++ .+..+|++.|+ ++||.+.|+. . .+++||++ +.+++++++++++|++
T Consensus 321 ~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~--~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 321 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCF--AKKESTLLAAAERLRQ 381 (382)
T ss_dssp ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEEC--CSCHHHHHHHHHHHTT
T ss_pred ecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEE--eCCHHHHHHHHHHHhC
Confidence 873 45778898876 5799999862 1 25799975 4588999999999875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=2e-26 Score=222.74 Aligned_cols=313 Identities=18% Similarity=0.168 Sum_probs=201.4
Q ss_pred EeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-----CCCeEEecCCHHHH
Q 012368 93 YDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-----FADRVFFSNTGTEA 167 (465)
Q Consensus 93 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-----~~~~v~~~~sG~eA 167 (465)
+...+++.+++..| .++++ .++.+++++.+++..... .+++.....+|++.+++++ ..++|++|+|+++|
T Consensus 14 ~~~~~~d~~~l~~~--enp~~-~p~~i~~~~~~~~~~~~~--~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~ 88 (334)
T d2f8ja1 14 YETEKRDKTYLALN--ENPFP-FPEDLVDEVFRRLNSDAL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEI 88 (334)
T ss_dssp CCCCCCCSEECSSC--CCSSC-CCHHHHHHHHHHCCTTGG--GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHH
T ss_pred ccccCCCceEEECC--CCCCC-CCHHHHHHHHHHhhcchh--cCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhH
Confidence 34467778887766 34666 578899999988865321 2233333345555555544 27889999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT 247 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 247 (465)
+.++++ .+++|++++|+|.++...+...+...... +...+.. . .++..++..
T Consensus 89 l~~l~~---------------~~d~v~i~~P~y~~~~~~~~~~g~~~v~v----~~~~~~~--------~-~~~~~~~~~ 140 (334)
T d2f8ja1 89 IYVMML---------------MFDRSVFFPPTYSCYRIFAKAVGAKFLEV----PLTKDLR--------I-PEVNVGEGD 140 (334)
T ss_dssp HHHHHH---------------HSSEEEECSSCCHHHHHHHHHHTCCEEEC----CCCTTSC--------C-CCCCCCTTE
T ss_pred HHHHhh---------------hccccccccccccccccchhccCCccccc----ccccccc--------c-cccccccce
Confidence 887654 26789999999988876555444332211 1111111 0 112223455
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeE
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAA 326 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v 326 (465)
.+++++|.|++|.+. +.+.++ + +.++++++|+||+|.++............+...-+.++||.++ .|+|+||+
T Consensus 141 ~l~l~nP~NPtG~~~--s~~~l~---~-~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~ 214 (334)
T d2f8ja1 141 VVFIPNPNNPTGHVF--EREEIE---R-ILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYV 214 (334)
T ss_dssp EEEEESSCTTTCCCC--CHHHHH---H-HHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEE
T ss_pred EEEecccccccceee--cHHHhh---c-cccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhc
Confidence 667788887777543 555443 3 3468999999999876533332222222222233457999998 59999999
Q ss_pred EeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe
Q 012368 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~ 406 (465)
++++++++.+... ..+++.+.+++.++.+.++. .++.++.++....-++.|.+.+++++ +...++.|.|+++.+
T Consensus 215 ~~~~~~i~~l~~~--~~~~~~s~~~~~~a~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~g~f~~~~~ 288 (334)
T d2f8ja1 215 VASEKFIDAYNRV--RLPFNVSYVSQMFAKVALDH---REIFEERTKFIVEERERMKSALREMG-YRITDSRGNFVFVFM 288 (334)
T ss_dssp EECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCCCSSEEEEEC
T ss_pred ccchHHHHHHHHh--hcccccchhhhhhccccccc---ccchhhHHHHHHHHHHHHHHHHHHCC-CeECCCCceEEEEEC
Confidence 9999999888643 34556788888888887763 33333333333333334444444444 334566788888877
Q ss_pred c-CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 407 D-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 407 ~-~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+ .+..++.+.|+++||.+++.. +++|+++ .+.+|+++++++|++
T Consensus 289 ~~~~~~~~~~~L~~~GI~vr~~~--~~vRis~---g~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 289 EKEEKERLLEHLRTKNVAVRSFR--EGVRITI---GKREENDMILRELEV 333 (334)
T ss_dssp CHHHHHHHHHHHHHTTEECEEET--TEEEEEC---CCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCEECCCC--CeEEEEc---CCHHHHHHHHHHHhc
Confidence 3 356789999999999998753 7899985 378889999888875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=2.1e-26 Score=221.73 Aligned_cols=330 Identities=15% Similarity=0.101 Sum_probs=216.1
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHh
Q 012368 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t 179 (465)
++||.+...+. ++|+|++|+.++... . ..+++.+...+|+++|++++|.+.+++++||++|+..|+++++.
T Consensus 1 ~~~~~~~~~t~----p~p~v~~A~~~a~~g--~-~~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~-- 71 (343)
T d1m6sa_ 1 MIDLRSDTVTK----PTEEMRKAMAQAEVG--D-DVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ-- 71 (343)
T ss_dssp CEECSCGGGCC----CCHHHHHHHHTCCCC--C-GGGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCC--
T ss_pred CcccccccCCC----CCHHHHHHHHhhhcC--C-cccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhc--
Confidence 37887765544 479999999765321 1 12345677899999999999999999999999999999997763
Q ss_pred hhcCCCCCCCCceEEEEcCCcccCcccccccc-CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCeEEEEEc
Q 012368 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVE 253 (465)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a~vi~e 253 (465)
+++.+++..+.++.......... ....+. +..... ...|++.+++.+.. ..+..++++
T Consensus 72 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 135 (343)
T d1m6sa_ 72 ---------RGDEVILEADSHIFWYEVGAMAVLSGVMPH----PVPGKN---GAMDPDDVRKAIRPRNIHFPRTSLIAIE 135 (343)
T ss_dssp ---------TTCEEEEETTCHHHHSSTTHHHHHTCCEEE----EECEET---TEECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred ---------cCCceeccccccceeeecccccccccceee----cccccc---CccCHHHHHHhhhhhhcccccccccccc
Confidence 47778877777654443222211 111100 000000 01278888888862 245667777
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCC-ccceeeEEeCHHH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKV 332 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i 332 (465)
+.+++.|..+++.+.+++|+++|++||+++++|+++.++......+.........+..+++|..+. |.+.+++++..+.
T Consensus 136 ~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (343)
T d1m6sa_ 136 NTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDF 215 (343)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHH
T ss_pred cccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHH
Confidence 766666667788999999999999999999999999865332222222222223455667766664 5777888888876
Q ss_pred HhhccCCC--CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---
Q 012368 333 ASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--- 407 (465)
Q Consensus 333 ~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--- 407 (465)
+..+.... ...+.......+++.. ..........+...++..++.+.+.++.... . .......++++.++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~v~~~~~~~~ 290 (343)
T d1m6sa_ 216 IERARKARKMLGGGMRQAGVLAAAGI--IALTKMVDRLKEDHENARFLALKLKEIGYSV-N--PEDVKTNMVILRTDNLK 290 (343)
T ss_dssp HHHHHHHHHHHTCCCSSTHHHHHHHH--HHHHHSSTTHHHHHHHHHHHHHHHHHHTCBC-C--GGGCCSSEEEEECTTSS
T ss_pred HhhhHhhCcccccccchhHHHHHhhh--hhhhhhHHHHHHHHHHHHHhhhHHHHhccCc-c--CCCCCceEEEEEeCCCc
Confidence 65543221 2222323322222222 2222234445556666666666666552111 1 11223467777763
Q ss_pred CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 408 VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 408 ~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..+.++.+.|+++||++.+.+. +.+||+++..+|+||||+++++|+++++++
T Consensus 291 ~~a~~l~~~L~~~Gi~v~~~~~-~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 291 VNAHGFIEALRNSGVLANAVSD-TEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp SCHHHHHHHHHHHTEECEEEET-TEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999998776 789999999999999999999999999886
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.93 E-value=1.2e-24 Score=217.16 Aligned_cols=300 Identities=15% Similarity=0.074 Sum_probs=185.0
Q ss_pred CHHHHHHHHHHHhhcC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 139 SIPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~------~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+.++++++++.+.++ +++|++|+|+++|+..++++.. .++|.|++.+|+|+++........+
T Consensus 86 ~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~-----------~~Gd~Vlv~~P~y~~~~~~~~~~~g 154 (428)
T d1iaya_ 86 PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-----------DPGDAFLVPSPYYPAFNRDLRWRTG 154 (428)
T ss_dssp HHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-----------CTTCEEEEESSCCTTHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC-----------CCCCEEEEccCCchHHHHHHHHhcC
Confidence 3557778888877654 6799999999999999988654 2789999999999887644432222
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcC------CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~------~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D 286 (465)
......+..+ ..+.. .|.++++.+++ ....+.++++|.|++| ...+.+.+++|.++|++||++||+|
T Consensus 155 ~~~v~v~~~~-~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG--~~~s~~~~~~i~~~a~~~~~~vI~D 227 (428)
T d1iaya_ 155 VQLIPIHCES-SNNFK----ITSKAVKEAYENAQKSNIKVKGLILTNPSNPLG--TTLDKDTLKSVLSFTNQHNIHLVCD 227 (428)
T ss_dssp CEEEEECCCT-TTTTC----CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred CeEEEeeccc-ccccc----cccccccchhhhhhccCCCceEEEEccCCCccc--ccccccccchhheeeccCcEEEEec
Confidence 2111100000 01111 15666655432 2234556677776665 4568899999999999999999999
Q ss_pred ccccCCCCCCccc-cc-ccc----------CCcccEEEecccCCC-ccceeeEEeC-HHHHhhccCCCCcCCCCChHHHH
Q 012368 287 EVQCGLGRTGYLW-AH-EHY----------GIFPDIMTLAKPLAG-GLPIGAALVT-EKVASAINYGDHGSTFAGSPLVC 352 (465)
Q Consensus 287 Ev~~g~gr~g~~~-~~-~~~----------~~~pdi~t~sK~lg~-G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~ 352 (465)
|+|.++.+.+..+ .. ... +...-+.+|||.++. |+|+||+++. +.+.+.+.... .....+...+
T Consensus 228 e~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~--~~~~~~~~~~ 305 (428)
T d1iaya_ 228 EIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS--SFGLVSTQTQ 305 (428)
T ss_dssp CTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH--TTSCCCHHHH
T ss_pred ccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhh--cccccccccc
Confidence 9999875444321 11 100 111224479999984 9999999984 56666554211 1122344444
Q ss_pred HHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--------ChHHHHHHHHH-CCc
Q 012368 353 NAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--------SATPVVDACRD-SGL 422 (465)
Q Consensus 353 ~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~-~Gv 422 (465)
.++.+.+.... -+++.++.++.....++.+.+.++..++....+..|.|+|+++.. ...++++.|++ +||
T Consensus 306 ~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV 385 (428)
T d1iaya_ 306 YFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKL 385 (428)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCE
T ss_pred cchhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCE
Confidence 44444332110 022333333333333444555454444322233447788888731 23467888875 599
Q ss_pred eEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 423 LVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 423 ~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+.|+. .++++|+++. ..++++|++++++|++++..
T Consensus 386 ~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 386 NVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp ECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred EEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence 998862 1478999764 35778899999999999864
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.93 E-value=8.9e-25 Score=218.42 Aligned_cols=301 Identities=16% Similarity=0.102 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHhhcC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 140 IPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 140 ~~~~~la~~l~~~~~------~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+.++++++++.++++ +++|++|+|+++|+..+++++. .++|.|++.+|+|+++........+.
T Consensus 88 ~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~-----------~pGd~Vlv~~P~y~~~~~~~~~~~g~ 156 (431)
T d1m7ya_ 88 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-----------DPGEAVLIPTPYYPGFDRDLKWRTGV 156 (431)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-----------CTTCEEEEEESCCTTHHHHTTTTTCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHhcCc
Confidence 456777777776653 6799999999999999998664 26899999999998776544322222
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcC-----CCCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-----PGKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-----~~~~-a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
.... .+......+- -|.+++++.++ ..++ ..++++|.|++| ...+++.+++|.++|++||+++|+||
T Consensus 157 ~~v~---v~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG--~~~s~~~l~~i~~~a~~~~~~vI~De 229 (431)
T d1m7ya_ 157 EIVP---IHCTSSNGFQ--ITETALEEAYQEAEKRNLRVKGVLVTNPSNPLG--TTMTRNELYLLLSFVEDKGIHLISDE 229 (431)
T ss_dssp EEEE---EECCGGGTSC--CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred eecc---ccccchhccc--ccHHHhhhhhhhhhhccCcceEEEecCcccccc--ccccccccccccccccccCcceeecc
Confidence 1111 0111110000 16777776664 2233 456667776665 34689999999999999999999999
Q ss_pred cccCCCCCCccc-cc-cc---c---------CCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHH
Q 012368 288 VQCGLGRTGYLW-AH-EH---Y---------GIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352 (465)
Q Consensus 288 v~~g~gr~g~~~-~~-~~---~---------~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~ 352 (465)
+|..+.+.+..+ .. .. . +...-+.++||.++ .|+|+||++++++++...... .......++..+
T Consensus 230 ~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 308 (431)
T d1m7ya_ 230 IYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-MSSFGLVSSQTQ 308 (431)
T ss_dssp TTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-HGGGSCCCHHHH
T ss_pred cccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHH-Hhcccccccccc
Confidence 998865444321 11 00 0 01112337999999 599999999988765443221 122233444555
Q ss_pred HHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC--------ChHHHHHHHHH-CCc
Q 012368 353 NAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--------SATPVVDACRD-SGL 422 (465)
Q Consensus 353 ~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~-~Gv 422 (465)
.++.+.+.... .+++.++.++..+..++.+.+.+.+.++....+..|.|+|+++.. ...+++++|++ .||
T Consensus 309 ~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV 388 (431)
T d1m7ya_ 309 HLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHL 388 (431)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCE
T ss_pred chhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCE
Confidence 55544443211 123444444444444455555555554322223347788888731 23467888774 699
Q ss_pred eEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 423 LVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 423 ~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.|+. .++++||+++ ..+++++++++++|++++++.
T Consensus 389 ~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 389 NISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp ECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHh
Confidence 999863 1478999764 347889999999999998763
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=7.8e-25 Score=210.41 Aligned_cols=328 Identities=15% Similarity=0.122 Sum_probs=198.8
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~~ 177 (465)
.+|||.|.. .++.||+|++|+.++... +...++.++...+++++++++++.+ .++|++||+|||..|++.++.
T Consensus 3 ~~~~f~s~n----~~g~~P~v~~A~~~a~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~ 76 (345)
T d1v72a1 3 PALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTP 76 (345)
T ss_dssp CCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCC
T ss_pred CCcCcCCCC----CCCCCHHHHHHHHHHhcc--CccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHh
Confidence 468999743 344799999999886532 2334456777899999999999954 789999999999999987663
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCcccccc---ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCeEE
Q 012368 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAA 249 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a~ 249 (465)
.++.+++... .|.+...... .++... . +..... ....+++.+++.+.. ....+
T Consensus 77 -----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~----~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 137 (345)
T d1v72a1 77 -----------PWGNIYCHPA-SHINNDECGAPEFFSNGAK-L----MTVDGP--AAKLDIVRLRERTREKVGDVHTTQP 137 (345)
T ss_dssp -----------TTEEEEECTT-SHHHHSSTTHHHHHTTSCE-E----EECCCG--GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred -----------cCCccccccc-cceeeechhhHHHhcCccc-c----cccccc--cccccHHHhhhhhcccccccccccc
Confidence 3444444333 3333222111 111100 0 000000 011378899988862 23455
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC--cccEEEecccCCCccceeeEE
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLAKPLAGGLPIGAAL 327 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~--~pdi~t~sK~lg~G~~iG~v~ 327 (465)
++++++..+.+....+.++++++.++|++||+++++|++++++...+.......... ..+..+++|..+++...+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (345)
T d1v72a1 138 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIV 217 (345)
T ss_dssp EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEE
T ss_pred eeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccc
Confidence 666666665555667889999999999999999999999986544333322332222 345667777776654444444
Q ss_pred eC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEE
Q 012368 328 VT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIE 405 (465)
Q Consensus 328 ~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~ 405 (465)
.. ..................+ ....++.+++....+ ............+.+.+.+.+.+.+.+... +..++++++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~ 295 (345)
T d1v72a1 218 LFNTSLATEMSYRRKRAGHLSS-KMRFLSAQIDAYLTD-DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCR 295 (345)
T ss_dssp ESSGGGHHHHHHHHHHTTCCCS-STHHHHHHHHHHTST-THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEE
T ss_pred cchhhhhhhccccccccccccc-hhhHHhhhhHHHHHH-hhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEE
Confidence 33 2222222111111111111 222233333333333 333334444445555555666677655433 3345667666
Q ss_pred ecCChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 406 FDVSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 406 ~~~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
++ .++.+.|+++|+.+.+... .+.+||+++..+|+||||+++++|+++
T Consensus 296 ~~---~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 296 LD---SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp EC---HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred cC---HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 52 4678899999998865432 478999999999999999999999864
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.5e-24 Score=209.54 Aligned_cols=285 Identities=17% Similarity=0.196 Sum_probs=186.9
Q ss_pred CCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc-eEEEEcCCcccCccccccccC
Q 012368 136 MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT-EFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 136 ~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~-~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.||++...+|+++|+++++ +++|++|+|++||+..++++... +++ .|++.+|+|..+...+...+.
T Consensus 52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~-----------pgd~~Vl~~~P~y~~~~~~~~~~g~ 120 (354)
T d1fg7a_ 52 RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE-----------PGKDAILYCPPTYGMYSVSAETIGV 120 (354)
T ss_dssp SCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC-----------TTTCEEEECSSSCTHHHHHHHHHTC
T ss_pred cCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhc-----------cccccccccccccccchhhhhccCc
Confidence 4566556789999999988 78999999999999999996652 566 588889999877755544443
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
.... .+...+.. -|+++++..+. ++.+|+ ++|+|++ |.+ .+++.++.+.+.++ ++.++|+||.|..
T Consensus 121 ~v~~----~~~~~~~~----~d~~~l~~~~~--~~~~v~~~~pnNPt-G~~-~~~~~~~~~~~~~~-~~~~~iidd~~~~ 187 (354)
T d1fg7a_ 121 ECRT----VPTLDNWQ----LDLQGISDKLD--GVKVVYVCSPNNPT-GQL-INPQDFRTLLELTR-GKAIVVADEAYIE 187 (354)
T ss_dssp EEEE----CCCCTTSC----CCHHHHHTSCT--TEEEEEEESSCTTT-CCC-CCHHHHHHHHHHHT-TTCEEEEECTTGG
T ss_pred eeec----cccccccc----cchhhhhhccc--ccceeeccCCCccc-eeE-eeeccccccccccc-ccccccccccchh
Confidence 2211 12222222 27899988874 344544 4545544 443 47888888888776 5778888888877
Q ss_pred CCCCCcc-ccccccCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchH--
Q 012368 292 LGRTGYL-WAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF-- 367 (465)
Q Consensus 292 ~gr~g~~-~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~-- 367 (465)
|...... ..........-+-||||.+| +|+|+||+++++++++.+.. ....++.+.+++.++.+++..-.....
T Consensus 188 f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 265 (354)
T d1fg7a_ 188 FCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMK--VIAPYPLSTPVADIAAQALSPQGIVAMRE 265 (354)
T ss_dssp GSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHH--HSCSSCSCHHHHHHHHHHTSHHHHHHHHH
T ss_pred hccccccchhhcccccceEEeCCccccCCCccccccccccchhhhhhhh--hcCccchhhHHHHHHHHHHhhhccccccc
Confidence 7433221 11111121222348999999 69999999999999988863 234455666666655555432111122
Q ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCce-eeeccceEEEEEecCChHHHHHHHHHCCceEeecCC----CCEEEEecCCCC
Q 012368 368 -LASVSKKGHYFKETLKQKLARNPHVK-DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----GNVVRLVPPLII 441 (465)
Q Consensus 368 -~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~lRi~~~~~~ 441 (465)
.+++.+..+++. +.+.+.+... ..++.|+|++++++ ++.++++.|+++||++++++. ++++|+++ .
T Consensus 266 ~~~~~~~~r~~l~----~~l~~~~~~~~~~p~~~~f~~~~~~-~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisi---g 337 (354)
T d1fg7a_ 266 RVAQIIAEREYLI----AALKEIPCVEQVFDSETNYILARFK-ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITV---G 337 (354)
T ss_dssp HHHHHHHHHHHHH----HHHHHSTTEEEECCCSSSEEEEEET-THHHHHHHHHHTTEECEECTTSTTCTTEEEEEC---C
T ss_pred cchhhhhHHHHHH----HHHHhCCCcceeCCCCceEEEEeCC-CHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEe---C
Confidence 222333333333 3334455443 34566888998884 577899999999999987642 47999985 4
Q ss_pred cHHHHHHHHHHHH
Q 012368 442 SEQELDQAVEILC 454 (465)
Q Consensus 442 t~e~i~~~l~~l~ 454 (465)
+++|+++++++|+
T Consensus 338 t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 338 TREESQRVIDALR 350 (354)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 7889998888875
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.91 E-value=3e-23 Score=203.84 Aligned_cols=321 Identities=14% Similarity=0.157 Sum_probs=209.3
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC------CCCHHHHHHHHHHHhhcC--CCeEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM------YYSIPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA 167 (465)
+..-|+|..+ +|..+..|++|+.+.++........ .......++++.|++.++ .++|+||+||++|
T Consensus 6 ~~~~yld~~~------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a 79 (381)
T d1elua_ 6 ANKTYFNFGG------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 79 (381)
T ss_dssp TTSEECCTTT------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCCEEeeCCc------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence 4566888554 5667778999998887643211111 111224567778888887 6789999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC------C-CHHHHHh
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY------G-NIEATRK 240 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-d~~~le~ 240 (465)
+..++..+.. .+++.|++.++.|++.......+..... ..+..+|. . +.+.+++
T Consensus 80 ~~~~~~~l~~----------~~g~~i~~~~~~~~s~~~~~~~~~~~~g---------~~~~~v~~~~~~~~~~~~~~l~~ 140 (381)
T d1elua_ 80 CDIVLWGLDW----------HQGDEILLTDCEHPGIIAIVQAIAARFG---------ITYRFFPVAATLNQGDAAAVLAN 140 (381)
T ss_dssp HHHHHHHSCC----------CTTCEEEEETTCCHHHHHHHHHHHHHHC---------CEEEEECCGGGSSSSCHHHHHHT
T ss_pred hhhcchhhhh----------cCCceEEEeccccceeeecccccccccc---------ccccccccccccccchHHHHHHh
Confidence 9998875421 2588999999888754432222110000 01111221 1 2566777
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh----CCEEEEeccccCCCCCCccccccccCCcccEEEec--
Q 012368 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA----GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA-- 314 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~----g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s-- 314 (465)
++++ +++++++..+++.+|.+.+ +++|.++|++| ++++++|.+|+ +|.. ..+.....+|++++|
T Consensus 141 ~i~~-~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~----~~~~~~~~~D~~~~s~~ 210 (381)
T d1elua_ 141 HLGP-KTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL----PLDFSRLEVDYYAFTGH 210 (381)
T ss_dssp TCCT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB----CCCTTTSCCSEEEEESS
T ss_pred hhcc-cccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc----ccccccccccccccccc
Confidence 7765 6778888887777788776 88999999985 68999999986 4321 122233457777655
Q ss_pred ccCCCccceeeEEeCHHHHhhccCCCCc----------------------CCCCChHHHHHHHHHHHHHhcCc----hHH
Q 012368 315 KPLAGGLPIGAALVTEKVASAINYGDHG----------------------STFAGSPLVCNAAIAVLDKISNP----AFL 368 (465)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~----------------------~t~~~~~~~~~aa~a~L~~~~~~----~~~ 368 (465)
|+++++.++|+++.+++..+.+.+...+ .....+.....+..++++.+... ...
T Consensus 211 K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~ 290 (381)
T d1elua_ 211 KWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERY 290 (381)
T ss_dssp STTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccch
Confidence 9998877889999999888776542111 01123444555556666654332 234
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCce---eeeccceEEEEEec--CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcH
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVK---DVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISE 443 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~ 443 (465)
++..++.+++.+.|+++ +.+. .....+.++++.++ .....+.+.|.++||.+...+.++++|++++..+|+
T Consensus 291 ~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~ 366 (381)
T d1elua_ 291 QAICQRSEFLWRGLNQL----PHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDE 366 (381)
T ss_dssp HHHHHHHHHHHHHHHHS----TTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCH
T ss_pred hhhhhHHHHHHHHHhcC----CCeEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCH
Confidence 55556666666665553 3222 22235667777663 345778999999999988766568999999999999
Q ss_pred HHHHHHHHHHHH
Q 012368 444 QELDQAVEILCK 455 (465)
Q Consensus 444 e~i~~~l~~l~~ 455 (465)
+|||+++++|++
T Consensus 367 edid~ll~~l~e 378 (381)
T d1elua_ 367 EEINHLLARLAD 378 (381)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.91 E-value=3.7e-23 Score=208.66 Aligned_cols=346 Identities=14% Similarity=0.113 Sum_probs=211.9
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a 175 (465)
.|+.+|||.+..++..++|.. ..+ +..+.. .+..++...+|++++++++|.+.++|++||++|++.|++++
T Consensus 40 ~~~~~id~~sd~~t~~~~~~~---~a~----~~~gd~--~y~~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~ 110 (465)
T d1ax4a_ 40 SSAVYIDLLTDSGTNAMSDHQ---WAA----MITGDE--AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 110 (465)
T ss_dssp GGGCSEECSCSSSCCCEEHHH---HHH----HHTCCC--CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred ccCeeeecccccchhhhhHHH---HHH----Hhhhhh--hhccChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHH
Confidence 467899999988766555322 222 222211 22346667899999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCcccccc-ccC-CCCcC-----CCCCCCCCCceEeeCCCHHHHHhhcC---CC
Q 012368 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTS-KEHYR-----SPFEPVMPGVNFVEYGNIEATRKLIQ---PG 245 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~~~~~d~~~le~~l~---~~ 245 (465)
+.+....+.. +..++. +.||+.+..... ..+ .+... ..+.+..+... ..|+++|+++|+ ++
T Consensus 111 ~~~g~~~~~~----~~~~i~--~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~ 181 (465)
T d1ax4a_ 111 LKYKQKEGKA----KNPVFI--SNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKG---DFDIKKLKENIAQHGAD 181 (465)
T ss_dssp HHHHHHTTCC----SSCEEE--ESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTT---CBCHHHHHHHHHHHCGG
T ss_pred HHHHHhcCCC----CCeEEe--ccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccC---ccCHHHHHHHHHhhccc
Confidence 9876544332 333443 355654433321 111 11100 00001000000 028899999986 34
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC------CCCCCccccccccCC------cccEEEe
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG------LGRTGYLWAHEHYGI------FPDIMTL 313 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g------~gr~g~~~~~~~~~~------~pdi~t~ 313 (465)
.++++++++.++++|..+++.+++++|+++|++||++||+||++.. .++.+..+.....++ ..|++++
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~ 261 (465)
T d1ax4a_ 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTM 261 (465)
T ss_dssp GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEE
T ss_pred cccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEe
Confidence 6889999999999999999999999999999999999999999862 222322222222222 2578899
Q ss_pred cccCCCc-cceeeEEeCHH--HHhhcc----CCCCcCCCCC-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 012368 314 AKPLAGG-LPIGAALVTEK--VASAIN----YGDHGSTFAG-SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 314 sK~lg~G-~~iG~v~~~~~--i~~~~~----~~~~~~t~~~-~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~ 385 (465)
||+.+++ ++.|+++.+++ +..... ......++.+ ...+++++...+.....+++.++..++.+++.+.|++.
T Consensus 262 s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~ 341 (465)
T d1ax4a_ 262 SAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA 341 (465)
T ss_dssp ETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9988864 66777777643 222211 1122333333 33344444444554445667777777788888888775
Q ss_pred HHcCCCceeeeccceEEEEEe--c-C-----ChHH-HHHHHHHCCceEeecC----------------CCCEEEEec-CC
Q 012368 386 LARNPHVKDVRGLGLIIGIEF--D-V-----SATP-VVDACRDSGLLVLTAG----------------KGNVVRLVP-PL 439 (465)
Q Consensus 386 ~~~~~~~~~~~~~g~~~~i~~--~-~-----~~~~-~~~~l~~~Gv~v~~~~----------------~~~~lRi~~-~~ 439 (465)
..+.+....+.+.+..... . . .... ....+.+.||.....+ ..+.+||++ ..
T Consensus 342 --g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~ 419 (465)
T d1ax4a_ 342 --GIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 419 (465)
T ss_dssp --TCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred --cCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCC
Confidence 3333333333333322211 1 1 1222 3444557787654321 125799975 47
Q ss_pred CCcHHHHHHHHHHHHHHHHHhh
Q 012368 440 IISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 440 ~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++|+||+|.++++|++++++.+
T Consensus 420 ~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 420 VYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp SSCHHHHHHHHHHHHTTHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999887654
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.9e-21 Score=189.37 Aligned_cols=332 Identities=15% Similarity=0.081 Sum_probs=220.9
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-------HHHHHHHHHHHhhcC---CCeEEecCCHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-------IPQIELAKRLVACSF---ADRVFFSNTGTEAN 168 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~la~~l~~~~~---~~~v~~~~sG~eA~ 168 (465)
-|+|..++ |..++.|.+++.+.+++.........+ ...++.++.+++.++ .+.|+|++++|+++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~ 97 (405)
T d1jf9a_ 24 AYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI 97 (405)
T ss_dssp EECCTTTC------CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHH
Confidence 47876553 347789999999988763211111111 224566778888886 46899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
..+++....... .+++.|++.+..||........+.........+.|..++.. -|++.+++++.+ +++
T Consensus 98 ~~~~~~~~~~~~-------~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~----~~~~~~~~~i~~-~t~ 165 (405)
T d1jf9a_ 98 NLVANSWGNSNV-------RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGT----LQLETLPTLFDE-KTR 165 (405)
T ss_dssp HHHHHHHHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSC----BCGGGHHHHCCT-TEE
T ss_pred HHHHhccccccc-------CCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCc----CCHHHHHHhccC-CcE
Confidence 988875432211 25889999999998877555433211111111112112111 168889998875 689
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeE
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAA 326 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v 326 (465)
+|.++.+++..|.+.| +++|.++|+++|+++++|-+|+ .|.. ..+.....+|++++| |++| +..+|++
T Consensus 166 lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~----~id~~~~~~D~~~~s~hK~~G-p~G~g~l 235 (405)
T d1jf9a_ 166 LLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH----PVDVQALDCDFYVFSGHKLYG-PTGIGIL 235 (405)
T ss_dssp EEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS----CCCHHHHTCSEEEEEGGGTTS-CSSCEEE
T ss_pred EEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-cccc----ccchhhcCCceeecccccccc-CCCceee
Confidence 9999999999999988 9999999999999999999986 3221 122223347888766 9864 4558999
Q ss_pred EeCHHHHhhccCCCCcC----------------------CCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 012368 327 LVTEKVASAINYGDHGS----------------------TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~----------------------t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~ 384 (465)
+.++++++.+.+..... .-+.+..+..+..++++.+.+.+ .+++.+....+.+.+.+
T Consensus 236 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~L~~~~~~ 314 (405)
T d1jf9a_ 236 YVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG-LNNIAEYEQNLMHYALS 314 (405)
T ss_dssp EECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred eechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHh
Confidence 99999887665421100 01245667777777787654322 34455555555555666
Q ss_pred HHHcCCCcee--eeccceEEEEEec-CChHHHHHHHHHCCceEeecC-----------CCCEEEEecCCCCcHHHHHHHH
Q 012368 385 KLARNPHVKD--VRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 385 ~~~~~~~~~~--~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------~~~~lRi~~~~~~t~e~i~~~l 450 (465)
.+...+.... ....+.++.+.++ .....+...|.++||.++.+. ..+.+|++++..+|++|||.++
T Consensus 315 ~l~~~~~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~ 394 (405)
T d1jf9a_ 315 QLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLV 394 (405)
T ss_dssp HHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHH
T ss_pred hhhcCCcccccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHH
Confidence 5556553322 2234556667773 567778888889999887532 2467999999999999999999
Q ss_pred HHHHHHHHH
Q 012368 451 EILCKTLPV 459 (465)
Q Consensus 451 ~~l~~~l~~ 459 (465)
+.|+++++-
T Consensus 395 ~~l~~i~r~ 403 (405)
T d1jf9a_ 395 TGLQRIHRL 403 (405)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.89 E-value=1.6e-22 Score=200.03 Aligned_cols=332 Identities=11% Similarity=-0.002 Sum_probs=190.1
Q ss_pred EecccCcccccCCC--CCHHHHHHHHHHHhhccc---ccCCCCCHHHHHHHHHHHhhcC----CCeEEecCC--HHHHHH
Q 012368 101 LDLSSGIAVNALGH--GDADWIKAVVDQANVLTH---VSNMYYSIPQIELAKRLVACSF----ADRVFFSNT--GTEANE 169 (465)
Q Consensus 101 lD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~s--G~eA~~ 169 (465)
||+..|.+..+-|. ..|.|++|..+.+.+... .+..+..+.++++++++.+..+ .+.|+.+.+ |+.+..
T Consensus 31 InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~ 110 (401)
T d7aata_ 31 MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLR 110 (401)
T ss_dssp EECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHH
T ss_pred EEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHH
Confidence 66666643333343 347888888877665321 1222333446677777766554 566655533 333443
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---CCC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGK 246 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~ 246 (465)
.+..+++.+.. ++|.|++++|+|+++...+...+...... ++.....+. .|++.+.+.+. +..
T Consensus 111 ~~~~~~~~l~~--------pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~ 176 (401)
T d7aata_ 111 VGANFLQRFFK--------FSRDVYLPKPSWGNHTPIFRDAGLQLQAY----RYYDPKTCS--LDFTGAMEDISKIPEKS 176 (401)
T ss_dssp HHHHHHHHHCT--------TCCEEEEEESCCTTHHHHHHHTTCEEEEE----ECEETTTTE--ECHHHHHHHHTTSCTTC
T ss_pred HHHHhhHhhcC--------CCceEEEecCCCcchhhHHHHcCCeEEEE----ecccccccc--ccHHHHHHHHhcCCCce
Confidence 33333344443 79999999999999876665544332211 110000000 16777776664 233
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc---c-ccccc---CCcccEEEecccCCC
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---W-AHEHY---GIFPDIMTLAKPLAG 319 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~---~-~~~~~---~~~pdi~t~sK~lg~ 319 (465)
...++++|.||+| ..++.+.+++|.++|++|++++|.||+|.++.+.+.. . ..... .....+.++||.++.
T Consensus 177 ~~iii~~p~NPTG--~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~ 254 (401)
T d7aata_ 177 IILLHACAHNPTG--VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGL 254 (401)
T ss_dssp EEEEESSSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC
T ss_pred EEEEecCCCCCcc--ccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecccccee
Confidence 4444455555554 4569999999999999999999999999998655421 1 01111 112334478999985
Q ss_pred -ccceeeEEeCHHHHhhccCC-------CCcCCCCChHHHHHHHHHHHHHhc-C---chHHHHHHHHHHHHHHHHHHHHH
Q 012368 320 -GLPIGAALVTEKVASAINYG-------DHGSTFAGSPLVCNAAIAVLDKIS-N---PAFLASVSKKGHYFKETLKQKLA 387 (465)
Q Consensus 320 -G~~iG~v~~~~~i~~~~~~~-------~~~~t~~~~~~~~~aa~a~L~~~~-~---~~~~~~~~~~~~~l~~~l~~~~~ 387 (465)
|+|+||++++.++.+..... ......+.+.+.++++...++.-. . ....+.+++.....++.|.+.+.
T Consensus 255 ~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 334 (401)
T d7aata_ 255 YGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLK 334 (401)
T ss_dssp GGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987655543211 112223455666666665554210 0 11222233333333344444444
Q ss_pred cCCC---ce-eeeccceEEEEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 388 RNPH---VK-DVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 388 ~~~~---~~-~~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+++. +. ..+..|.|.|+.+ ..+++++|+ ++||++.|+ +||+++ ..++++|+.++++|.+++
T Consensus 335 ~~~~~~~~~~~~~~~G~F~~~~l---s~e~~~~L~~e~gV~~~pg-----~Ris~a-~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 335 KEGSSHNWQHITDQIGMFCFTGL---KPEQVERLTKEFSIYMTKD-----GRISVA-GVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HTTCCSCCHHHHHCCSSEEECCC---CHHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred HhCCCCCcceECCCCeEEEecCC---CHHHHHHHHHhCCEEECCC-----cEEEec-cCCHHHHHHHHHHHHHHh
Confidence 4331 11 2244566666554 245677765 579998875 388765 357778999998888875
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.88 E-value=7.9e-22 Score=195.68 Aligned_cols=341 Identities=11% Similarity=0.015 Sum_probs=190.0
Q ss_pred EecccCcccccCCC--CCHHHHHHHHHHHhhc--cc--ccCCCCCHHHHHHHHHHHhhcC----CC--eEEecCCHHHHH
Q 012368 101 LDLSSGIAVNALGH--GDADWIKAVVDQANVL--TH--VSNMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTEAN 168 (465)
Q Consensus 101 lD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~--~~--~~~~~~~~~~~~la~~l~~~~~----~~--~v~~~~sG~eA~ 168 (465)
||++.|.+...-|. ..|.|++|........ .+ .+..+..+.++++++++.+..+ .+ .+..+.+++.++
T Consensus 33 Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (412)
T d1ajsa_ 33 VNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGAL 112 (412)
T ss_dssp EECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred EEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHH
Confidence 56655533333342 3467777765543321 11 1112222335555555544433 33 356677888888
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---CC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PG 245 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~ 245 (465)
..+...+........ +++|.|++++|+|.++...+...++.......+.. ..... .|++.+++.+. +.
T Consensus 113 ~~~~~~l~~~~~~~~----~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~-~~~~~----~d~~~~~~~~~~~~~~ 183 (412)
T d1ajsa_ 113 RIGAEFLARWYNGTN----NKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD-TEKRG----LDLQGFLSDLENAPEF 183 (412)
T ss_dssp HHHHHHHHHHSSSSS----CCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE-TTTTE----ECHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhhhcC----CCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccc-ccccc----ccHHHHHHHHHhccCC
Confidence 887766543321111 26999999999998887666555443221100000 01111 16666655543 33
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc---ccc-cc---cCCcccEEEecccCC
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---WAH-EH---YGIFPDIMTLAKPLA 318 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~---~~~-~~---~~~~pdi~t~sK~lg 318 (465)
.+..+++.|.||+| .+++++.+++|.++|++||+++|+||+|.++.+.+.. +.. .. .....-+.++||.++
T Consensus 184 ~~~il~~~P~NPTG--~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~ 261 (412)
T d1ajsa_ 184 SIFVLHACAHNPTG--TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG 261 (412)
T ss_dssp CEEEEESSSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC
T ss_pred cEEEEecCCCCCcC--CCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccccccccccc
Confidence 33444445555555 4579999999999999999999999999998655521 111 11 112223446899998
Q ss_pred C-ccceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhc-Cch---HHHHHHHHHHHHHHHHHHHH
Q 012368 319 G-GLPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKIS-NPA---FLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 319 ~-G~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~-~~~---~~~~~~~~~~~l~~~l~~~~ 386 (465)
. |+|+||++++....+.+.. .......+.+.+++.++.+.+.... ..+ .++..++..+..++.|.+.+
T Consensus 262 ~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L 341 (412)
T d1ajsa_ 262 LYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARL 341 (412)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 8999999987544333211 1112333455666666665554211 111 22222333333333444444
Q ss_pred HcCCC---cee-eeccceEEEEEecCChHHHHHHH-HHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 387 ARNPH---VKD-VRGLGLIIGIEFDVSATPVVDAC-RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 387 ~~~~~---~~~-~~~~g~~~~i~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..++. +.. ....|.|.++.+ + .++++.| .++||++.|++ ||+++ ..++++|+.++++|++++++++
T Consensus 342 ~~~~~~~~~~~i~~~~G~F~~~~l--s-~~~v~~L~~e~gV~~vpg~-----Ri~~a-g~~~~~i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 342 EALKTPGTWNHITDQIGMFSFTGL--N-PKQVEYLINQKHIYLLPSG-----RINMC-GLTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp HHTTCSSCCHHHHHCCSSEEECCC--C-HHHHHHHHHTTCEECCTTS-----EEEGG-GCCTTTHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCCeeeecCCCeEEEecCC--C-HHHHHHHHHhCCEEEeCCC-----eEEec-cCCHHHHHHHHHHHHHHHHhcC
Confidence 44432 112 233466655433 3 3455555 46799988753 78754 3467889999999999998764
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=6.1e-22 Score=195.47 Aligned_cols=331 Identities=13% Similarity=0.036 Sum_probs=189.6
Q ss_pred EecccCcccccCCC--CCHHHHHHHHHHHhhccc---ccCCCCCHHHHHHHHHHHhhcC----CC--eEEecCCHHHHHH
Q 012368 101 LDLSSGIAVNALGH--GDADWIKAVVDQANVLTH---VSNMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTEANE 169 (465)
Q Consensus 101 lD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~~----~~--~v~~~~sG~eA~~ 169 (465)
||+..|.+..+-|. ..|.|++|..+.++.... .+..+..+.++++++++.+..+ .+ .+..+.+|+.+..
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (396)
T d2q7wa1 29 INLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALR 108 (396)
T ss_dssp EESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHH
T ss_pred EEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHH
Confidence 78887754444453 347899998887765321 1122233446666666665554 23 3445666766666
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---CCC
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGK 246 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~ 246 (465)
+++...... .+++.|++.+|+|.++.......+........... .+.. .+...+++... +..
T Consensus 109 l~~~~l~~~---------~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~ 173 (396)
T d2q7wa1 109 VAADFLAKN---------TSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDA--ENHT----LDFDALINSLNEAQAGD 173 (396)
T ss_dssp HHHHHHHHH---------SCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEET--TTTE----ECHHHHHHHHTTCCTTC
T ss_pred HHHHHHhhc---------ccceEEEEecCCCccchHHHHHcCCeeEecccccc--cccc----cccchHHHHHHHhccCc
Confidence 655544322 26899999999999888766655543321100000 0111 13444444432 333
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc--cc----cccCCcccEEEecccCCC-
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AH----EHYGIFPDIMTLAKPLAG- 319 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~--~~----~~~~~~pdi~t~sK~lg~- 319 (465)
...++++|.||+| ..++.+.+++|.++|++|++++|+||+|.+|.+.+... .. +.......+.++||.++.
T Consensus 174 ~~i~~~~P~NPTG--~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~ 251 (396)
T d2q7wa1 174 VVLFHGCCHNPTG--IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLY 251 (396)
T ss_dssp EEEEECSSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred EEEEecCCcCCcC--eecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccccc
Confidence 4444445565555 45699999999999999999999999999986544311 11 112223344578999985
Q ss_pred ccceeeEEeCHHHHhhccCC------CCcCC-CCChHHHHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHHHHHHHc
Q 012368 320 GLPIGAALVTEKVASAINYG------DHGST-FAGSPLVCNAAIAVLDKIS----NPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~------~~~~t-~~~~~~~~~aa~a~L~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
|+|+||++++...++.+... ....+ .+.+...+.++.+.+..-. -.+..+..++..+..++.+.+.+..
T Consensus 252 G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 331 (396)
T d2q7wa1 252 NERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE 331 (396)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred CCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987655443221 11122 3345555555554443110 0122222333333333444444444
Q ss_pred CCCc---e-eeeccceEEEEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 389 NPHV---K-DVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 389 ~~~~---~-~~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++.. . .....|.|.|+.+ + .+++++|+ ++||++.+++ ||+++ ..++++|+.++++|.+++
T Consensus 332 ~~~~~~~~~~~~~~G~F~~~~l--~-~e~~~~L~~e~gV~~~~g~-----Ri~~a-~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 332 KGANRDFSFIIKQNGMFSFSGL--T-KEQVLRLREEFGVYAVASG-----RVNVA-GMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp TTCCSCCTHHHHCCSSEEECCC--C-HHHHHHHHHHHCEECCTTC-----EEEGG-GCCTTTHHHHHHHHHHHC
T ss_pred hCCCCCcceecCCCeEEEeeCC--C-HHHHHHHHHhCCEEECCCC-----EEEec-CCCHHHHHHHHHHHHHhC
Confidence 4321 1 1344577777654 2 45667776 5799887754 88765 346778999999988763
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.87 E-value=7.8e-20 Score=180.81 Aligned_cols=333 Identities=14% Similarity=0.080 Sum_probs=214.6
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-------HHHHHHHHHHHhhcC---CCeEEecCCHHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-------IPQIELAKRLVACSF---ADRVFFSNTGTEAN 168 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~la~~l~~~~~---~~~v~~~~sG~eA~ 168 (465)
-|+|..+. |..++.|.+++.+.++..........+ ...++.++.++++++ .+.+++++++++++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~ 97 (408)
T d1t3ia_ 24 VYLDNAAT------SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI 97 (408)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence 47886654 346788999999987763211111111 224456777888887 46799999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
..++.......- +++++|++.+..|++.................+.+...... .+.+.+++++++ +++
T Consensus 98 n~~~~~~~~~~~-------~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~----~~~~~l~~~~~~-~t~ 165 (408)
T d1t3ia_ 98 NLVAYSWGMNNL-------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQES----FDLEHFKTLLSE-KTK 165 (408)
T ss_dssp HHHHHHTHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSS----BCHHHHHHHCCT-TEE
T ss_pred HHHHhhcccccc-------CCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccccc----ccHHHhhhccCC-Cce
Confidence 887765432211 25788888888887665443322110000000111111111 168999999875 789
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeE
Q 012368 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAA 326 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v 326 (465)
+|.+..+++..|.+.| +++|.++|+++|+++|+|-+|+ +|.. .++.....+|++++| |.+ |+..+|++
T Consensus 166 lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~----~id~~~~~~D~~~~s~hK~~-gp~G~g~l 235 (408)
T d1t3ia_ 166 LVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHY----PLDVQLIDCDWLVASGHKMC-APTGIGFL 235 (408)
T ss_dssp EEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS----CCCHHHHTCSEEEEEGGGTT-SCTTCEEE
T ss_pred EEEEecccccccccCc----HHHHhhhhhccCceeeecccee-cccc----cccccccCCceEEecccccc-CCCCcccc
Confidence 9999999999999888 8999999999999999999986 4322 122223346888776 874 45568999
Q ss_pred EeCHHHHhhccCCCCcC---------------------CCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 012368 327 LVTEKVASAINYGDHGS---------------------TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~---------------------t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~ 385 (465)
+.+++......+...++ +-+.+..+++++.++++.+.+-+ .+++++....+.+.+.+.
T Consensus 236 ~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~ 314 (408)
T d1t3ia_ 236 YGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLG-MENIHNYEVELTHYLWQG 314 (408)
T ss_dssp EECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHhHHhhh
Confidence 99999876654421110 11235566666777777654322 234444444445555555
Q ss_pred HHcCCCceee------eccceEEEEEe-cCChHHHHHHHHHCCceEeec-----------CCCCEEEEecCCCCcHHHHH
Q 012368 386 LARNPHVKDV------RGLGLIIGIEF-DVSATPVVDACRDSGLLVLTA-----------GKGNVVRLVPPLIISEQELD 447 (465)
Q Consensus 386 ~~~~~~~~~~------~~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~-----------~~~~~lRi~~~~~~t~e~i~ 447 (465)
+...+..... ...+.++.+.+ ..+..++...|.++||.++.+ +..+.+||+++...|++|||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did 394 (408)
T d1t3ia_ 315 LGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEID 394 (408)
T ss_dssp HHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHH
T ss_pred hccCccccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHH
Confidence 5555532211 12345566666 356788899998999988643 12367999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 012368 448 QAVEILCKTLPVL 460 (465)
Q Consensus 448 ~~l~~l~~~l~~~ 460 (465)
.+++.|+++++.+
T Consensus 395 ~li~~L~~~~~~f 407 (408)
T d1t3ia_ 395 LFLQSLQATIRFF 407 (408)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.6e-22 Score=202.48 Aligned_cols=350 Identities=13% Similarity=0.098 Sum_probs=210.7
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHH
Q 012368 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~ 176 (465)
++.+||+.+.+++.... +++...+..+.. .+..++...+|++++++++|.+.+++++||++|+..|+++++
T Consensus 40 ~~~~idl~sd~~t~~~~-------~~~~a~~~~gd~--~Y~~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~ 110 (467)
T d2v1pa1 40 EDVFIDLLTDSGTGAVT-------QSMQAAMMRGDE--AFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLI 110 (467)
T ss_dssp GGCSEECSCCTTCSCCC-------HHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHH
T ss_pred cceeeeccccccchhhH-------HHHHhhccccch--hhcCCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHh
Confidence 34578988876654322 122222222211 223466688999999999999999999999999999999998
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcC---CCCCCCCCCceEeeCCCHHHHHhhcC---CCCeEEE
Q 012368 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR---SPFEPVMPGVNFVEYGNIEATRKLIQ---PGKTAAV 250 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~a~v 250 (465)
.+....... .+..++.....||+.+.+....++..... ...........+....|+++|+++++ +..++++
T Consensus 111 ~~g~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i 187 (467)
T d2v1pa1 111 KKREQEKGL---DRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI 187 (467)
T ss_dssp HHHHHHHCC---CTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCE
T ss_pred hccceEecC---CCCcEEEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCcccccee
Confidence 765322111 24456777888888776666555432110 00000000111122248999999986 3457899
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC---CCCCcccccccc---------CCcccEEEecccCC
Q 012368 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL---GRTGYLWAHEHY---------GIFPDIMTLAKPLA 318 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~---gr~g~~~~~~~~---------~~~pdi~t~sK~lg 318 (465)
++|+.++++|..+++.+++++|+++|++||++||+|+++..- +..+........ .-..|++++|+..+
T Consensus 188 ~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~ 267 (467)
T d2v1pa1 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267 (467)
T ss_dssp EEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSST
T ss_pred eecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCC
Confidence 999999998888899999999999999999999999997520 011111111111 12468888887665
Q ss_pred Cccc-eeeEEeCHHH-Hhhcc-------CCCCcCCCCCh-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012368 319 GGLP-IGAALVTEKV-ASAIN-------YGDHGSTFAGS-PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 319 ~G~~-iG~v~~~~~i-~~~~~-------~~~~~~t~~~~-~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
++.+ .|+++.+++. ..... ...+..++.+. ...+++....+.....+++.++..++.+++.++|.+. .
T Consensus 268 ~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~ 345 (467)
T d2v1pa1 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI--G 345 (467)
T ss_dssp TCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred CCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhc--C
Confidence 4334 4555555432 22111 11233344444 4444455555665556778888888899998888774 1
Q ss_pred CCCceeeeccceEEEEEe--c------CChHHH-HHHHHHCCceEeecC----------------CCCEEEEecC-CCCc
Q 012368 389 NPHVKDVRGLGLIIGIEF--D------VSATPV-VDACRDSGLLVLTAG----------------KGNVVRLVPP-LIIS 442 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~--~------~~~~~~-~~~l~~~Gv~v~~~~----------------~~~~lRi~~~-~~~t 442 (465)
. .+....+.+.+..... . .....+ .+.+.+.||.....+ ....+||++| ..+|
T Consensus 346 ~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T 424 (467)
T d2v1pa1 346 V-VCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYT 424 (467)
T ss_dssp C-CEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCC
T ss_pred C-cccCCCccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCC
Confidence 1 1222222222221111 1 112223 334456777542110 1357999875 5779
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012368 443 EQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 443 ~e~i~~~l~~l~~~l~~~~ 461 (465)
++|||.++++|++++++.+
T Consensus 425 ~eeiD~vv~~l~~v~~~~~ 443 (467)
T d2v1pa1 425 QTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987543
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.8e-20 Score=184.42 Aligned_cols=328 Identities=16% Similarity=0.144 Sum_probs=196.2
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCC-------HHHHHHHHHHHhhcC--CCeEEecCCHHHH
Q 012368 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYS-------IPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~--~~~-------~~~~~la~~l~~~~~--~~~v~~~~sG~eA 167 (465)
-|+|..++ |..+|.|++|+.+.+.....+.+. ..+ +...++++++++.++ .++|.|++|++++
T Consensus 4 iYlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~ 77 (391)
T d1p3wa_ 4 IYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATES 77 (391)
T ss_dssp EECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHH
Confidence 47786653 457899999999887643221111 111 224466778888887 6799999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (465)
+..++..+..... .+++.|++.++.|++.......+ .+.... ..+...... -|++++++++++
T Consensus 78 l~~~~~~~~~~~~-------~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~---~v~~~~~~~----~d~~~~~~~i~~- 142 (391)
T d1p3wa_ 78 DNLAIKGAANFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGFEVT---YLAPQRNGI----IDLKELEAAMRD- 142 (391)
T ss_dssp HHHHHHHHHHHHG-------GGCCEEEEETTSCHHHHHHHHHHHHTTCEEE---EECCCTTSC----CCHHHHHHHCCT-
T ss_pred HHHHHhhhhhhhc-------CCCCEEEEeccccchHHHHHHHHHHcCCEEE---EeCCCCCCe----EcHHHHHHhCCC-
Confidence 9988886653221 15889999999987654333221 111110 111111111 178999999975
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCCccce
Q 012368 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPI 323 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~~i 323 (465)
++++|+++.+++.+|.+.+ +++|.++|++||+++++|.+|+ +|.. ..+.....+|++++ .|.+| +..+
T Consensus 143 ~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~----~~d~~~~~~D~~~~s~~k~~g-~~g~ 212 (391)
T d1p3wa_ 143 DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL----PIDLSQLKVDLMSFSGHKIYG-PKGI 212 (391)
T ss_dssp TEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB----CCCTTTSCCSEEEEESTTTTS-CSSC
T ss_pred CcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc----cccchhccccccccccccccC-CCce
Confidence 6888888888888888877 8999999999999999999986 3321 12222344676654 47653 3456
Q ss_pred eeEEeCHHHHhhccCCCCcC-------CCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCce-
Q 012368 324 GAALVTEKVASAINYGDHGS-------TFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVK- 393 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~-------t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~- 393 (465)
|+++++++......+...++ ....+.....+....++...+ ....++++++..++.+.| ...+...
T Consensus 213 g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~ 288 (391)
T d1p3wa_ 213 GALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI----KDIEEVYL 288 (391)
T ss_dssp EEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TTSTTEEE
T ss_pred EEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHH----HhhcCeee
Confidence 88888887766655432221 112222222222223332211 222334444444444333 3333111
Q ss_pred ---eeeccceEEEEEe-cCChHHHHHHHHHCCceEeec-----------------CC-----CCEEEEecCCCCcHHHHH
Q 012368 394 ---DVRGLGLIIGIEF-DVSATPVVDACRDSGLLVLTA-----------------GK-----GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 394 ---~~~~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~-----------------~~-----~~~lRi~~~~~~t~e~i~ 447 (465)
.......++.+.+ ......+...|. ++.++.+ +. ++.+|+++++.+|++|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid 366 (391)
T d1p3wa_ 289 NGDLEHGAPNILNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 366 (391)
T ss_dssp CSCTTTSCTTEEEEEETTSCHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred cccccccCceEEEEEeCCCChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHH
Confidence 1112233334444 345566666664 3333211 00 246999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 012368 448 QAVEILCKTLPVLDSN 463 (465)
Q Consensus 448 ~~l~~l~~~l~~~~~~ 463 (465)
.+++.|+++++++++.
T Consensus 367 ~l~~~l~~~l~~lr~~ 382 (391)
T d1p3wa_ 367 YTIELVRKSIGRLRDL 382 (391)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988754
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=1.8e-20 Score=182.28 Aligned_cols=315 Identities=14% Similarity=0.111 Sum_probs=184.5
Q ss_pred CCCCHHHHHHHHHHHhhcccc---cCC----C-CCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 113 GHGDADWIKAVVDQANVLTHV---SNM----Y-YSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 113 Gh~~p~v~~a~~~~~~~~~~~---~~~----~-~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
|.-+|++++|+.+....+... ... . ..+....++++++++++.|.+++|+||++|+..++....
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~-------- 83 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLA-------- 83 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHC--------
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHh--------
Confidence 455688888887643321100 000 0 112467789999999999999999999999999998664
Q ss_pred CCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhcC----CCCeEEEEEcccCCC
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQ----PGKTAAVFVEPIQGE 258 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~----~~~~a~vi~ep~~~~ 258 (465)
.++|.||+.+++|+.....+...+....+. |.. .+.. -|+++++++++ ...+++|+++..+++
T Consensus 84 ---~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v----~~~~~~~~~----i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~ 152 (364)
T d2e7ja1 84 ---KKDAWVVMDENCHYSSYVAAERAGLNIALV----PKTDYPDYA----ITPENFAQTIEETKKRGEVVLALITYPDGN 152 (364)
T ss_dssp ---CTTCEEEEETTCCHHHHHHHHHTTCEEEEE----CCCCTTTCC----CCHHHHHHHHHHHTTTSCEEEEEEESSCTT
T ss_pred ---CCCcEEEeecccccccchHHHhccceEEEe----eeccccccc----cCHHHHHhhhhhhcccCCceEEEeecCCCC
Confidence 268999999988866554433222211111 111 0111 27889988885 234677777777777
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhc
Q 012368 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAI 336 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~ 336 (465)
.|.+.+ +++|.++|++||+++|+||+|+ +|..+. ....++ .|++++| |.++++.++|++++++++++.+
T Consensus 153 tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~~--~~~~~g--~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~ 223 (364)
T d2e7ja1 153 YGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMPV--SLKEIG--ADFIVGSGHKSMAASGPIGVMGMKEEWAEIV 223 (364)
T ss_dssp TCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBCC--CHHHHT--CSEEEEEHHHHSSCCSSCEEEEECTTTTTTT
T ss_pred Cceeec----chhheeccccccchhhccccch-hhhhhh--cccccc--cceeeeccccccCCCCCEEEEEECHHHHHHH
Confidence 787766 9999999999999999999996 433221 122223 5666654 9998755789999999887765
Q ss_pred cCCCC----------cCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEE
Q 012368 337 NYGDH----------GSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405 (465)
Q Consensus 337 ~~~~~----------~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~ 405 (465)
..... +.+..+. ...+..++++...+ -+.+.+..++.+++.+.|+++ .+..............+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~ 299 (364)
T d2e7ja1 224 LRRSEKYKNKEVELLGCTARGA--TIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKL--GIKQLGDNPHNHDLMFFH 299 (364)
T ss_dssp TCBCSSCTTSBGGGTTCCCCSH--HHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHT--TCEEESSSSCCSSEEEEE
T ss_pred HhhccccCcccccccccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCeecCCCCCCcceEEEe
Confidence 42210 1111222 22333344443211 111222334455555555543 111111101111122222
Q ss_pred ec----------CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 406 FD----------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 406 ~~----------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.. .....+...+.+.|+.....+.....|++ .+..|++||++++++|++++++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~-~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 300 AEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp CHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHhhccchHHHHHHHhcCCceecCCCcceEEEe-ccCCCHHHHHHHHHHHHHHHHHh
Confidence 21 11223455566778765544444566765 56679999999999999998864
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.86 E-value=6.9e-21 Score=188.74 Aligned_cols=332 Identities=14% Similarity=0.083 Sum_probs=186.2
Q ss_pred EecccCcccccCCCC--CHHHHHHHHHHHhhc--cc--ccCCCCCHHHHHHHHHHHhhcC----CCeEE--ecCCHHHHH
Q 012368 101 LDLSSGIAVNALGHG--DADWIKAVVDQANVL--TH--VSNMYYSIPQIELAKRLVACSF----ADRVF--FSNTGTEAN 168 (465)
Q Consensus 101 lD~~~~~~~~~lGh~--~p~v~~a~~~~~~~~--~~--~~~~~~~~~~~~la~~l~~~~~----~~~v~--~~~sG~eA~ 168 (465)
||++.|.+...-|.. .|.|++|........ .+ .+..+..+.++++++++.+..+ .+.+. .+.+|..+.
T Consensus 32 InL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (412)
T d1yaaa_ 32 VDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGAL 111 (412)
T ss_dssp EECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred EEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHH
Confidence 677766544445543 367777754433221 11 1112223335555565555444 33332 233444444
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CCC
Q 012368 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGK 246 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~ 246 (465)
..++..... . .++|.|++.+|+|..+...+...+...... +......+. .|.+.+++.+. .+.
T Consensus 112 ~~~~~~~~~-~--------~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~ 176 (412)
T d1yaaa_ 112 HISAKFFSK-F--------FPDKLVYLSKPTWANHMAIFENQGLKTATY----PYWANETKS--LDLNGFLNAIQKAPEG 176 (412)
T ss_dssp HHHHHHHHH-H--------CTTCCEEEEESCCTTHHHHHHTTTCCEEEE----ECEETTTTE--ECHHHHHHHHHHSCTT
T ss_pred HHHHHHHhc-c--------CCCCEEecccccCchhHHHHHHcCCceecc----ccccccccc--ccchhhhcccccCCCc
Confidence 444433222 2 268999999999988876665544332211 110000000 15666666554 223
Q ss_pred eEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-c------ccccCCcc---cEEEecc
Q 012368 247 TAA-VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A------HEHYGIFP---DIMTLAK 315 (465)
Q Consensus 247 ~a~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~------~~~~~~~p---di~t~sK 315 (465)
..+ ++..|.||+| ..++++.+++|.++|+++++++|+||+|.+|.+.+... . ....+..+ -+.++||
T Consensus 177 ~~~i~i~~P~NPTG--~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 254 (412)
T d1yaaa_ 177 SIFVLHSCAHNPTG--LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAK 254 (412)
T ss_dssp CEEEEECSSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred eEEEEecCCCCCcc--ccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCC
Confidence 344 4444555554 45699999999999999999999999999986655311 1 11112222 2337899
Q ss_pred cCCC-ccceeeEEeCHHHHhhccC-----------CCCcCCCCChHHHHHHHHHHHHHhc-C-------chHHHHHHHHH
Q 012368 316 PLAG-GLPIGAALVTEKVASAINY-----------GDHGSTFAGSPLVCNAAIAVLDKIS-N-------PAFLASVSKKG 375 (465)
Q Consensus 316 ~lg~-G~~iG~v~~~~~i~~~~~~-----------~~~~~t~~~~~~~~~aa~a~L~~~~-~-------~~~~~~~~~~~ 375 (465)
.++. |+|+||++++.++++.+.. .......+.+.+++.++...+..-. . +.+.+.+++++
T Consensus 255 ~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 334 (412)
T d1yaaa_ 255 NAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMR 334 (412)
T ss_dssp TSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 9995 9999999987654332211 0123455677888888877776321 0 12233344444
Q ss_pred HHHHHHHHHHHHcCC-Cceeee-ccceEEEEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHH
Q 012368 376 HYFKETLKQKLARNP-HVKDVR-GLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEI 452 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~-~~~~~~-~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~ 452 (465)
+.+.+.|++.. .+ .+..+. ..|.|.|+.+ ..+++++|+ ++||++.+++ ||+++ ..+++.|+.+.++
T Consensus 335 ~~l~~~L~~~g--~~~~~~~~~~~gG~F~~~~l---s~e~~~~L~~e~~V~~~~g~-----Ris~~-g~~~~~i~~l~~a 403 (412)
T d1yaaa_ 335 HALRDHLVKLG--TPGNWDHIVNQCGMFSFTGL---TPQMVKRLEETHAVYLVASG-----RASIA-GLNQGNVEYVAKA 403 (412)
T ss_dssp HHHHHHHHHHT--CSSCCTHHHHCCSSEEECCC---CHHHHHHHHHHHCEECCTTS-----EEEGG-GCCTTTHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCCceeCCCceEEEecCc---CHHHHHHHHHhCCEEECCCC-----EEEec-cCCHHHHHHHHHH
Confidence 44444444431 11 122233 3455555443 345677775 6799887643 88765 2567789999999
Q ss_pred HHHHHHHh
Q 012368 453 LCKTLPVL 460 (465)
Q Consensus 453 l~~~l~~~ 460 (465)
|+++++..
T Consensus 404 i~~v~k~~ 411 (412)
T d1yaaa_ 404 IDEVVRFY 411 (412)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988753
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.86 E-value=2.5e-21 Score=184.02 Aligned_cols=318 Identities=13% Similarity=0.067 Sum_probs=177.0
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 012368 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~ 188 (465)
+.| +||+|++|+.++..... ..++.++..++++++++++++ .++|+||+||+|||..++..+..
T Consensus 9 ~~g-~~P~v~eAl~~~~~~~~--~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~----------- 74 (340)
T d1svva_ 9 SVG-MHPKILDLMARDNMTQH--AGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR----------- 74 (340)
T ss_dssp SSC-CCHHHHHHHHHHTTCCC--CSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC-----------
T ss_pred CCC-CCHHHHHHHHHHhhcCC--CCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh-----------
Confidence 356 69999999998765432 233456667899999999998 56999999999999999986652
Q ss_pred CCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCH
Q 012368 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
++++++.....++................ .........+..+......... ......+++...++++|.+ .+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (340)
T d1svva_ 75 PWEAVIATQLGHISTHETGAIEATGHKVV----TAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQ-YTK 149 (340)
T ss_dssp TTEEEEEETTSHHHHSSTTHHHHTTCCEE----EECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCC-CCH
T ss_pred hccccccccccceeeeecccccccceeee----ecccccccccchhHHHHhhhhhcccCCcceeeeeccccccccc-ccH
Confidence 57778887777665543332222111100 0000000000001112222211 2234455555555555544 466
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCC--CCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC--CC
Q 012368 267 EFLQFLRDACDDAGALLVFDEVQCGLGR--TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG--DH 341 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~gr--~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~--~~ 341 (465)
+.+..+.+.|+++|+++++|+++.+... .+............++.++++..+++ ...++.............. ..
T Consensus 150 ~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (340)
T d1svva_ 150 QELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQR 229 (340)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHHHT
T ss_pred HHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhcccc
Confidence 7789999999999999999999875311 11111111112234556666666654 3333433333332222211 12
Q ss_pred cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCC
Q 012368 342 GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSG 421 (465)
Q Consensus 342 ~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~G 421 (465)
..+.+......+++.+.++........++...+..+ +.+.+...+.....+..+.++++.++ ......|.+++
T Consensus 230 ~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~g~~~~~p~~~~~v~~~~~---~~~~~~l~~~~ 302 (340)
T d1svva_ 230 GALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAI----LKAGLEACGIRLAWPSASNQLFPILE---NTMIAELNNDF 302 (340)
T ss_dssp TCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHH----HHHHHHHTTCCBSSCCSSSEECBEEE---HHHHHHHTTTE
T ss_pred cCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhh----hHHHHhcCCCeeecCCCceEEEEeCC---HHHHHHHHHhh
Confidence 233333344444433333221112233334444444 44444444433333455666666552 34566676665
Q ss_pred ce----EeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012368 422 LL----VLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 422 v~----v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
.. +.+.+. +.+||++++.+|++|||+++++|++
T Consensus 303 ~~~~~~~~~~~~-~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 303 DMYTVEPLKDGT-CIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp ECEEEEEETTTE-EEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred hhhcccccCCCC-cEEEEECCCCCCHHHHHHHHHHHhc
Confidence 43 333333 7899999999999999999999976
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=6.9e-22 Score=195.11 Aligned_cols=332 Identities=12% Similarity=0.042 Sum_probs=189.1
Q ss_pred EecccCcccccCCCC--CHHHHHHHHHHHhhc--c--cccCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012368 101 LDLSSGIAVNALGHG--DADWIKAVVDQANVL--T--HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 101 lD~~~~~~~~~lGh~--~p~v~~a~~~~~~~~--~--~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
||++.|.+..+-|.. .|.|++|........ . +.+..+..+.++++++++.+..+ .++|+.+.+++.+...
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (397)
T d3tata_ 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL 108 (397)
T ss_dssp EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence 777777554555643 367777765433221 1 11122223335556665555544 6778877776665554
Q ss_pred HHHHHH-HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC---CCC
Q 012368 171 AIKFAR-KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGK 246 (465)
Q Consensus 171 al~~a~-~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~ 246 (465)
++.++. ... .++|.|++++|+|.++...+...+...... +...+... ..|.+++.+.+. +..
T Consensus 109 ~l~~~~~~~~--------~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v----~~~~~~~~--~~~~~~~~~~~~~~~~~~ 174 (397)
T d3tata_ 109 KVGADFLKRY--------FPESGVWVSDPTWENHVAIFAGAGFEVSTY----PWYDEATN--GVRFNDLLATLKTLPARS 174 (397)
T ss_dssp HHHHHHHHHH--------CSSCCCEECSSCCTTHHHHHHTTTCCCEEC----CCCCTTTS--SCCHHHHHHHHTTCCSSC
T ss_pred HHHHHHhhhc--------CCCCcceecccCccccHHHHHHcCCEEEEE----ecchhhcc--ccchHHHHHHhhhccccc
Confidence 444332 222 278999999999999887776655433211 11111111 125666666554 223
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc--ccc-cccCCc---ccEEEecccCCC-
Q 012368 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL--WAH-EHYGIF---PDIMTLAKPLAG- 319 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~--~~~-~~~~~~---pdi~t~sK~lg~- 319 (465)
+..++.+|.||+| .+++++.+++|.++|++||+++|+||+|.++.+.+.. ... ...+.. ..+.++||.++.
T Consensus 175 ~~~~~~~p~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 252 (397)
T d3tata_ 175 IVLLHPCCHNPTG--ADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY 252 (397)
T ss_dssp CCEECSSSCSSSC--CCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBT
T ss_pred EEEEecCCCCCCC--eeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccccc
Confidence 3344444455554 5679999999999999999999999999998544321 111 111222 223468999986
Q ss_pred ccceeeEEeCHHHHhhccC-------CCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHH---HHHHHHHHHc
Q 012368 320 GLPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYF---KETLKQKLAR 388 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l---~~~l~~~~~~ 388 (465)
|+|+||++++..+++.... .......+.+...++++...+.... ..++.++++...+++ ++.+.+.+..
T Consensus 253 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 332 (397)
T d3tata_ 253 GERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLST 332 (397)
T ss_dssp TTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987654433221 1233344455566666655554211 122233333333333 3333333322
Q ss_pred CC---Cc-eeeeccceEEEEEecCChHHHHHHHHH-CCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 389 NP---HV-KDVRGLGLIIGIEFDVSATPVVDACRD-SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 389 ~~---~~-~~~~~~g~~~~i~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.. .+ ...+..|.|.|+.+ ..+++++|++ .||++.+++ ||+++ ..++++|+.+.++|++++
T Consensus 333 ~~~~~~~~~~~~~~G~F~~~~l---s~e~~~~L~~e~~V~l~~g~-----Ri~~a-~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 333 EMPERNFDYLLNQRGMFSYTGL---SAAQVDRLREEFGVYLIASG-----RMCVA-GLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp TCTTSCTTHHHHCCSSBCCCCC---CHHHHHHHTTTTCEECCSSS-----CCBTT-SCCTTTHHHHHHHHHHHC
T ss_pred hCCCCceEEEcCCCceEEecCc---CHHHHHHHHHhCCEEeCCCC-----EEEec-cCCHHHHHHHHHHHHHhC
Confidence 22 11 12345677777654 2456777765 699888753 67655 457888999998887763
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.84 E-value=4.6e-21 Score=189.14 Aligned_cols=283 Identities=14% Similarity=0.059 Sum_probs=180.4
Q ss_pred HHHHHHHHHhhc---C-----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 142 QIELAKRLVACS---F-----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 142 ~~~la~~l~~~~---~-----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
..+|++.|++.+ | ..+|++++|++|++.+++.++..... .....++++||++.|.|..+........+
T Consensus 102 ~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~---~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~- 177 (425)
T d2hoxa1 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMT---ATPDAPESKVVAHAPFYPVFREQTKYFDK- 177 (425)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTT---TCTTSCCEEEEECSSCCHHHHHHHHHSCB-
T ss_pred CHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccc---cccCCCCCEEEEecCccccHHHHHHHcCC-
Confidence 456777777665 3 34699999999999999986641100 00012689999999999877644322221
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
....+- .|.+.++++++++....++++|+||+|-... +..+++.+|.||+|.+..
T Consensus 178 -----------~~~~~~--~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~------------~v~~~~~~I~DEaY~~~~ 232 (425)
T d2hoxa1 178 -----------KGYVWA--GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH------------AVIKGCKSIYDMVYYWPH 232 (425)
T ss_dssp -----------TTEEEE--EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC------------CSSTTCEEEEECTTCSTT
T ss_pred -----------CCCccC--CCHHHHHhhCCCCceEEEEECCCCCCcchhh------------hhhhCCEEEEeccccCcc
Confidence 111111 2778888888765667788899988874321 234689999999996532
Q ss_pred CCCccccccccCCcccEEEecccCC-CccceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc--------
Q 012368 294 RTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-------- 363 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-------- 363 (465)
.+.. ....+...-+.+|||.+| .|+|+||++++ +.+++.+.......+++.+.++|.++.++|+...
T Consensus 233 f~~~---~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~ 309 (425)
T d2hoxa1 233 YTPI---KYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKG 309 (425)
T ss_dssp TSCC---CSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccch---hhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 2211 111222223447899999 59999997664 6676766544445667888999999999887531
Q ss_pred -CchHHHHHHHHHHHHHHHHHHHHHcCCCc---------------eeeeccceEEEEEecCChH-HHHHHHHHCCceEee
Q 012368 364 -NPAFLASVSKKGHYFKETLKQKLARNPHV---------------KDVRGLGLIIGIEFDVSAT-PVVDACRDSGLLVLT 426 (465)
Q Consensus 364 -~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---------------~~~~~~g~~~~i~~~~~~~-~~~~~l~~~Gv~v~~ 426 (465)
..++.+..++..+..++.|.+.+...+.. ......+.|.|+.+..+.. ...+.|.++||.+.|
T Consensus 310 ~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~p 389 (425)
T d2hoxa1 310 TMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQN 389 (425)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEe
Confidence 12334433333333334444444433311 1234556777887743322 345567789999998
Q ss_pred cC---C-CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012368 427 AG---K-GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 427 ~~---~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+. . ++++||+ +..++|++++++++|+++++
T Consensus 390 Gs~FG~~~~yvRis--l~~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 390 GVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp GGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHT
T ss_pred chhcCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHh
Confidence 63 2 4789996 46689999999999999875
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.84 E-value=3.3e-21 Score=187.98 Aligned_cols=283 Identities=10% Similarity=0.039 Sum_probs=167.4
Q ss_pred HHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC-CcccCccccccccCCCCcC
Q 012368 142 QIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN-SFHGRTMGALALTSKEHYR 217 (465)
Q Consensus 142 ~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~-~yhg~~~~~~~~~~~~~~~ 217 (465)
..++.+...+.++ .+.+++++||++|+..++.++. +++.+++..+ ..|......+.+.
T Consensus 52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~------------~~~~vi~~~~~~~~~~~~~~~~l~------ 113 (366)
T d2aeua1 52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK------------PKKVIHYLPELPGHPSIERSCKIV------ 113 (366)
T ss_dssp HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC------------CSEEEEECSSSSCCTHHHHHHHHT------
T ss_pred HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC------------CCCEEEEecCCCcchhHHHHHHhc------
Confidence 4566666565554 6789999999999999887543 5666666432 2334333332222
Q ss_pred CCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC--
Q 012368 218 SPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR-- 294 (465)
Q Consensus 218 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr-- 294 (465)
+..+++++|+++|++++++ ++++|+++ |.++++ .+.+.|++|.++|++||+++|+||+|....+
T Consensus 114 --------g~~~v~~~d~e~l~~~i~~-~tk~i~~~~p~n~~~----~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~ 180 (366)
T d2aeua1 114 --------NAKYFESDKVGEILNKIDK-DTLVIITGSTMDLKV----IELENFKKVINTAKNKEAIVFVDDASGARVRLL 180 (366)
T ss_dssp --------TCEEEEESCHHHHHTTCCT-TEEEEEECBCTTSCB----CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH
T ss_pred --------CCeEECCCCHHHHHHhcCC-CceEEEEEecCCCCc----CCHHHHHHHHHHhccCcEEEEEecCcccccccc
Confidence 2234566799999999986 46666665 445443 2455699999999999999999999863211
Q ss_pred CCccccccccCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch---HHHH
Q 012368 295 TGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA---FLAS 370 (465)
Q Consensus 295 ~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~---~~~~ 370 (465)
.+... ....+ .|++++||+.+ +|+++||+++++++++.+.......+++.+|+.+.++.++|+.+.-.. ..++
T Consensus 181 ~~~~~-~~~~~--~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~ 257 (366)
T d2aeua1 181 FNQPP-ALKLG--ADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFER 257 (366)
T ss_dssp TTCCC-HHHHT--CSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccCCC-HhhcC--ceEEEecccccccccceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11111 11223 46665554433 379999999999999988654344556678888888888887653222 2222
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcee--eeccce-EEEEEec-------CChHHHHHHHHH-CCceEeecC----CCCEEEE
Q 012368 371 VSKKGHYFKETLKQKLARNPHVKD--VRGLGL-IIGIEFD-------VSATPVVDACRD-SGLLVLTAG----KGNVVRL 435 (465)
Q Consensus 371 ~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g~-~~~i~~~-------~~~~~~~~~l~~-~Gv~v~~~~----~~~~lRi 435 (465)
.++....+.+.+.......+.... ....+. +++.... ....+++..|++ .||.+.|+. ..+.+||
T Consensus 258 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRi 337 (366)
T d2aeua1 258 AKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRI 337 (366)
T ss_dssp HHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEE
T ss_pred HHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEE
Confidence 233223344444444333332211 111222 2222221 123457777775 599877642 1357999
Q ss_pred ecCCCCcHH-HHHHHHHHHHHHHH
Q 012368 436 VPPLIISEQ-ELDQAVEILCKTLP 458 (465)
Q Consensus 436 ~~~~~~t~e-~i~~~l~~l~~~l~ 458 (465)
++....+++ +.+.+++.+.+.++
T Consensus 338 s~~~~~~~~i~~d~l~~ai~~~lK 361 (366)
T d2aeua1 338 DLTSRDAERIDDNYIIKAIVESIK 361 (366)
T ss_dssp ETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred eccccchhhCCHHHHHHHHHHHHH
Confidence 876443222 34455555555554
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=4.2e-20 Score=181.97 Aligned_cols=329 Identities=11% Similarity=0.016 Sum_probs=181.7
Q ss_pred EecccCcccccCCC--CCHHHHHHHHHHHhhcc-c--ccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHH
Q 012368 101 LDLSSGIAVNALGH--GDADWIKAVVDQANVLT-H--VSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 101 lD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~-~--~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al 172 (465)
||++-|.+-..-|. ..|.|++|+.+.++... + .+..+..+.++++++++.+... ....+.+.+|+.+..+++
T Consensus 29 InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (394)
T d2ay1a_ 29 IDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQAL 108 (394)
T ss_dssp EECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHH
T ss_pred EEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHH
Confidence 45555533333443 34789999888776532 2 1122223346666666655443 345666777777766665
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CCCeEEE
Q 012368 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAV 250 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~a~v 250 (465)
.+.... ++++.|++.+|+|..+...+...+...... +...+.... .+.+++++... ..++.++
T Consensus 109 ~~~~~~---------~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~ 173 (394)
T d2ay1a_ 109 ELARMA---------NPDLRVFVSDPTWPNHVSIMNFMGLPVQTY----RYFDAETRG--VDFEGMKADLAAAKKGDMVL 173 (394)
T ss_dssp HHHHHH---------CTTCCEEEEESCCHHHHHHHHHHTCCEEEE----ECEETTTTE--ECHHHHHHHHHTCCTTCEEE
T ss_pred HHhhhc---------CCceEEEEecccccchHHHHHHcCCEEEEe----cccchhccc--ccchhHHHHHhhcccCcEEE
Confidence 544322 268999999999987776555544322111 100000000 13444444432 2233344
Q ss_pred EE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc--ccc---ccC-CcccEEEecccCCC-ccc
Q 012368 251 FV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHE---HYG-IFPDIMTLAKPLAG-GLP 322 (465)
Q Consensus 251 i~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~--~~~---~~~-~~pdi~t~sK~lg~-G~~ 322 (465)
++ .|.||+| ..++++.+++|.++|++|++++|+||+|.+|.+.+... ... ..+ ....+.++||.++. |+|
T Consensus 174 ~~~~p~NPTG--~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R 251 (394)
T d2ay1a_ 174 LHGCCHNPTG--ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRER 251 (394)
T ss_dssp EESSSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGC
T ss_pred EeCCCCCCCC--CCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCccc
Confidence 33 3444444 56799999999999999999999999999986554311 110 111 12334478999985 999
Q ss_pred eeeEEeCHHHHhhccCC-------CCcCCCCChHHHHHHHHHHHHHh--c--Cch----HHHHHHHHHHHHHHHHHHHHH
Q 012368 323 IGAALVTEKVASAINYG-------DHGSTFAGSPLVCNAAIAVLDKI--S--NPA----FLASVSKKGHYFKETLKQKLA 387 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~-------~~~~t~~~~~~~~~aa~a~L~~~--~--~~~----~~~~~~~~~~~l~~~l~~~~~ 387 (465)
+||++++....+..... ......+.+...++.+...+..- . -.+ +.++++++++.+.+.|++...
T Consensus 252 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 331 (394)
T d2ay1a_ 252 TGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSG 331 (394)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999876544433210 11112223333444433333210 0 012 233344444444444444321
Q ss_pred cCCCce-eeeccceEEEEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012368 388 RNPHVK-DVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 388 ~~~~~~-~~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.. .+. ..+..|.|.|+.+ ..+++++|+ ++||++.+++ ||+++ .+++++|+.+.++|.++
T Consensus 332 ~~-~~~~~~~~~G~F~~~~l---s~~~~~~L~~~~~V~~~~g~-----Ri~~a-~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 332 SD-RFGFVAEHRGMFSRLGA---TPEQVKRIKEEFGIYMVGDS-----RINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp SS-TTTHHHHCCSSEEECCC---CHHHHHHHHHHHCEECCTTC-----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred CC-ceeeECCCceeEEecCc---CHHHHHHHHHhCCEEecCCC-----EEEec-CCCHHHHHHHHHHHHHh
Confidence 11 112 2334577777654 245677776 6799998753 88765 45778898888888764
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.6e-19 Score=174.70 Aligned_cols=318 Identities=16% Similarity=0.108 Sum_probs=200.2
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-C-C-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-A-D-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~-~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
-+|+|++|+.... ..|.+ .-..+...+..+.|++.++ . + .|+|+.|||+|++.++..... +++
T Consensus 30 ~~~~Vl~am~~~~--i~HRs-~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~-----------~~~ 95 (388)
T d1h0ca_ 30 LPPRIMAAGGLQM--IGSMS-KDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLE-----------PGD 95 (388)
T ss_dssp CCHHHHHHHTCCC--CCTTS-HHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCC-----------SSC
T ss_pred CCHHHHHHhCcCC--CCCCC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhc-----------cCC
Confidence 3577777764211 11110 0112336778888888887 2 2 599999999999999986652 678
Q ss_pred eEEEEcCCcccCcccccccc-CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 192 EFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 192 ~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
++++...++++......... +..... . ....+.. -|.+.+++.+...++.++.+..+++.+|.+.| ++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p----i~ 164 (388)
T d1h0ca_ 96 SFLVGANGIWGQRAVDIGERIGARVHP--M-TKDPGGH----YTLQEVEEGLAQHKPVLLFLTHGESSTGVLQP----LD 164 (388)
T ss_dssp CEEECBSSHHHHHHHHHHHHHC--CBC--C-BCCTTCC----CCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred ceeeecccceeeeeccccccccccccc--c-ccCCccc----cchHHHHHHhccCCcceEEEeeeeeccccccC----HH
Confidence 89888887776543322211 111000 0 0001111 15677766665445678888888888898887 89
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCC--------
Q 012368 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD-------- 340 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~-------- 340 (465)
+|.++|++||+++++|.+++ +|.. ..+......|+.++| |++++...+|+++.+++.++.+....
T Consensus 165 ~i~~~~~~~g~~~~vD~~qs-~g~~----~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
T d1h0ca_ 165 GFGELCHRYKCLLLVDSVAS-LGGT----PLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYL 239 (388)
T ss_dssp THHHHHHTTTCEEEEECTTT-TTTS----CCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTT
T ss_pred HHHHHhhcccccceeccccc-cccc----cccccccccceecccccccccCCCceEEEeecHHHHHhhhhcccccccccc
Confidence 99999999999999999987 3322 233334456777765 88876556678888887766553210
Q ss_pred ---------------CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCcee-eeccceE
Q 012368 341 ---------------HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKD-VRGLGLI 401 (465)
Q Consensus 341 ---------------~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~ 401 (465)
.......+.....+..++++.+.+ +...++..++.+++++.+..... ...... -.....+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~-~~~~~~~~~rs~~i 318 (388)
T d1h0ca_ 240 DIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGL-QLFVKDPALRLPTV 318 (388)
T ss_dssp CHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC-CBSSCSGGGBCTTE
T ss_pred ccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCc-ccccCCHHHcCCeE
Confidence 001112344556666677766543 34445555566666666655411 111111 1122345
Q ss_pred EEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEe-cCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 402 IGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLV-PPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 402 ~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~-~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.+.++ .+..++...|+++ ||.+..+. .++.+||+ +++..|.+|||+++++|+++|++++++
T Consensus 319 ~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 319 TTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 566663 4678898888765 99887653 25789998 677889999999999999999999865
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.81 E-value=5.6e-18 Score=166.95 Aligned_cols=333 Identities=17% Similarity=0.108 Sum_probs=211.5
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-ccc-----CCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHH
Q 012368 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS-----NMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~-----~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA 167 (465)
++..|||..+ .|..+..|.+++.+.+.... ... .....+..+++++++++.++ +++|+|++++|++
T Consensus 26 ~~~iYLd~as------~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~ 99 (404)
T d1qz9a_ 26 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 99 (404)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCCEEcCCcc------cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence 4567888654 45677889999999875421 110 01112346678899999998 7799999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCe
Q 012368 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT 247 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 247 (465)
+..++..+....... .+++.+++.+..++............... ..+......+++.+++++++ ++
T Consensus 100 ~~~~~~~~~~~~~~~-----~~~~~vi~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~-~T 165 (404)
T d1qz9a_ 100 LFKVLSAALRVQATR-----SPERRVIVTETSNFPTDLYIAEGLADMLQ--------QGYTLRLVDSPEELPQAIDQ-DT 165 (404)
T ss_dssp HHHHHHHHHHHHHHH-----STTCCEEEEETTSCHHHHHHHHHHHHHHC--------SSCEEEEESSGGGHHHHCST-TE
T ss_pred HHHHhhhhhhhhccc-----CCCcEEEEeccccchHHHHHHhhhheeee--------eceeccccccchhHHHhcCC-Cc
Confidence 988776443222111 14667788777766543322221111000 01111122367888899975 68
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCc-ccee
Q 012368 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGG-LPIG 324 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G-~~iG 324 (465)
++|.+..+++..|.+.| +++|.++|+++|+++++|-+|+ +|.. ....+. ..+|..++| |++.+| ..+|
T Consensus 166 ~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~--~~~~~~--~~~d~~~~s~~K~~~~~~g~~g 236 (404)
T d1qz9a_ 166 AVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAV--PVDLHQ--AGADYAIGCTYKYLNGGPGSQA 236 (404)
T ss_dssp EEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTS--CCCHHH--HTCSEEEECSSSTTCCCTTCCC
T ss_pred eEEEEecccccccceec----HHHHhccccccccceeEEeecc-cccc--cccccc--ccceEEEEechhhcccCCceEE
Confidence 99999999999999988 9999999999999999999987 4322 112222 345666554 887654 3467
Q ss_pred eEEeCHHHHhhccCCCC-----------------------cCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHH
Q 012368 325 AALVTEKVASAINYGDH-----------------------GSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYF 378 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~-----------------------~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l 378 (465)
+++.++.+.+.+.+... ......+..+.....++++.+.. +...++.......+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 316 (404)
T d1qz9a_ 237 FVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLF 316 (404)
T ss_dssp EEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred EEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence 77788777655432110 01112345555555566655433 33444445555555
Q ss_pred HHHHHHHHHcCCCc----eeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEec-CCCCcHHHHHHHHHHH
Q 012368 379 KETLKQKLARNPHV----KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP-PLIISEQELDQAVEIL 453 (465)
Q Consensus 379 ~~~l~~~~~~~~~~----~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~-~~~~t~e~i~~~l~~l 453 (465)
.+.+..+....+.. ......+.++.+.+. ++.++.+.|.++||.+..+.. +.+||+| ++..|++||+++++.|
T Consensus 317 ~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~-~~~~v~~~L~~~gi~~~~r~~-~~lRiS~~h~ynt~~did~~~~~L 394 (404)
T d1qz9a_ 317 IELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-EGYAVIQALIDRGVIGDYREP-RIMRFGFTPLYTTFTEVWDAVQIL 394 (404)
T ss_dssp HHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-THHHHHHHHHTTTEECEEETT-TEEEEECCTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEECCCCccceeeEEEEecC-CHHHHHHHHHHCCCEEeecCC-CeEEEECCCCCCCHHHHHHHHHHH
Confidence 55444443322211 112234566677663 577899999999998765543 7899999 5789999999999999
Q ss_pred HHHHHH
Q 012368 454 CKTLPV 459 (465)
Q Consensus 454 ~~~l~~ 459 (465)
++++++
T Consensus 395 ~~vl~~ 400 (404)
T d1qz9a_ 395 GEILDR 400 (404)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=1.1e-17 Score=163.23 Aligned_cols=330 Identities=14% Similarity=0.116 Sum_probs=187.3
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC------CHHHHHHHHHHHhhcC--CCeEEecCCHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY------SIPQIELAKRLVACSF--ADRVFFSNTGTEANE 169 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~ 169 (465)
+-|||..++ +..++.|++++.+.++..-..+.... ....++.+++++++++ .++|+|++++|+++.
T Consensus 2 ~iyld~a~~------~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~ 75 (376)
T d1eg5a_ 2 RVYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESIN 75 (376)
T ss_dssp CEECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHH
T ss_pred EEEEECccc------ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence 458887553 34788999999998875311111111 1113455678888887 679999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012368 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
.++........ .+++.|+.. ..+|+........-..........|...... -|++++++++++ ++++
T Consensus 76 ~~~~~~~~~~~-------~~g~~v~~~-~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~----id~~~l~~~i~~-~t~l 142 (376)
T d1eg5a_ 76 WILKTVAETFE-------KRKRTIITT-PIEHKAVLETMKYLSMKGFKVKYVPVDSRGV----VKLEELEKLVDE-DTFL 142 (376)
T ss_dssp HHHHHHHHHTT-------TTCCEEEEC-TTSCHHHHHHHHHHHHTTCEEEECCBCTTSC----BCHHHHHHHCCT-TEEE
T ss_pred hhhhccccccc-------ccCcccccc-cccchhhHHHHHHHHhcCCEEEEEcCCCCCe----ECHHHHHHhcCC-CceE
Confidence 98875532221 134445544 4444444332221100000000112111111 278999999975 6889
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceee
Q 012368 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGA 325 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~ 325 (465)
|++..+++.+|.+.+ ++++.++|+++ ++++++|.+|. +|.. ..+.....+|+++ ..|++|. -..|+
T Consensus 143 v~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~----~~d~~~~~~D~~~~s~~K~~gp-~G~~~ 212 (376)
T d1eg5a_ 143 VSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI----PFSLEKLEVDYASFSAHKFHGP-KGVGI 212 (376)
T ss_dssp EEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS----CCCCTTTCCSEEEEEGGGGTSC-TTCEE
T ss_pred EEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-cccc----cccccccCccceecccceeecC-CCcee
Confidence 999999999998877 88888888666 89999999986 4322 1222234467665 4599753 33455
Q ss_pred EEeCHHHHhhccCCCCc-------CCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012368 326 ALVTEKVASAINYGDHG-------STFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~-------~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
++.+++. .+.+...+ .....+......+.+....... ............++.+.|....... ......
T Consensus 213 l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 289 (376)
T d1eg5a_ 213 TYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHI-ITPLEI 289 (376)
T ss_dssp EEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEE-CSCTTS
T ss_pred EEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccc-cccccc
Confidence 5555442 23322111 1112233444444333433211 2223333334444444443321110 000111
Q ss_pred ccceEEEEEe-cCChHHHHHHHHHCCceEeecC-----------------C-----CCEEEEecCCCCcHHHHHHHHHHH
Q 012368 397 GLGLIIGIEF-DVSATPVVDACRDSGLLVLTAG-----------------K-----GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 397 ~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~~-----------------~-----~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.......+.+ +.+...+...|.++||.++.+. . ++.+|++++...|++|||.+++.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L 369 (376)
T d1eg5a_ 290 SLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKI 369 (376)
T ss_dssp BCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHH
T ss_pred cccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHH
Confidence 1222333444 4567888888889999876431 0 136999999999999999999999
Q ss_pred HHHHHH
Q 012368 454 CKTLPV 459 (465)
Q Consensus 454 ~~~l~~ 459 (465)
+++++-
T Consensus 370 ~~iv~~ 375 (376)
T d1eg5a_ 370 EEILSF 375 (376)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998863
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.79 E-value=3e-18 Score=166.25 Aligned_cols=290 Identities=11% Similarity=0.083 Sum_probs=182.3
Q ss_pred HHHHHHHHHHhhcC--CCe--EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc-cCCCC
Q 012368 141 PQIELAKRLVACSF--ADR--VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEH 215 (465)
Q Consensus 141 ~~~~la~~l~~~~~--~~~--v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~ 215 (465)
..++..+.|+++++ .+. ++++.|||++++.++..... +++++++....+++........ .....
T Consensus 34 ~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (361)
T d1m32a_ 34 VVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG-----------PQDKVLIVSNGAYGARMVEMAGLMGIAH 102 (361)
T ss_dssp THHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC-----------TTCCEEEEESSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh-----------hccccceeeehhhhhhHHHHhhhhhccc
Confidence 36788888898887 333 78889999999998875431 4556666666655443322211 11000
Q ss_pred cCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 216 YRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
.. ........ +..+.+.+.... ..++..+.+..+.+..|.+.+ +++|.++|++||+++++|-+|+ +|..
T Consensus 103 ~~---~~~~~~~~--~~~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~ 171 (361)
T d1m32a_ 103 HA---YDCGEVAR--PDVQAIDAILNA-DPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGI 171 (361)
T ss_dssp EE---EECCTTSC--CCHHHHHHHHHH-CTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTS
T ss_pred cc---ccccccCC--ccchhhHHHHHh-ccCccceEEEeeecccccchh----hhhhhhhhcccceeeEeecccc-cCcc
Confidence 00 00000000 000223333333 346788888888888898887 9999999999999999999997 4322
Q ss_pred CccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCCC------------------cCCCCChHHHHHHH
Q 012368 296 GYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGDH------------------GSTFAGSPLVCNAA 355 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~~------------------~~t~~~~~~~~~aa 355 (465)
.++......|+.++| |+++|...+|+++.+++.++...+... ...+..+...+.+.
T Consensus 172 ----~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 247 (361)
T d1m32a_ 172 ----PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAF 247 (361)
T ss_dssp ----CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred ----cccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHH
Confidence 233334557888877 888775668999999998877765321 12233455666666
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce----eeeccceEEEEEec----CChHHHHHHHHHCCceEeec
Q 012368 356 IAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK----DVRGLGLIIGIEFD----VSATPVVDACRDSGLLVLTA 427 (465)
Q Consensus 356 ~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~g~~~~i~~~----~~~~~~~~~l~~~Gv~v~~~ 427 (465)
..++.....+...+...+..+...+.+.+.+...+... ..++ ..++.+.++ .+..++.+.|.++|+.+.++
T Consensus 248 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs-~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G 326 (361)
T d1m32a_ 248 AQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHS-PIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPG 326 (361)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC-SSEEEEECCCCTTCCHHHHHHHHHHTTEECEEC
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcC-CcEEEEECCCCCCCCHHHHHHHHHHCCcEEECC
Confidence 67776554444444444444444444555444444211 1122 334455542 35678999999999998876
Q ss_pred CC--CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 428 GK--GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 428 ~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+. ++.+||+.....+++||++++++|+++|
T Consensus 327 ~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 327 KVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp CCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred CcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 43 5789998543579999999999999875
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.75 E-value=1.2e-16 Score=159.19 Aligned_cols=335 Identities=15% Similarity=0.117 Sum_probs=191.9
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHH
Q 012368 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
..+||+.+..++.. ..+++..++..+.- .+..++...+|++++++++|.+.+++++||+.|+.+++++...
T Consensus 42 ~v~iDl~sDs~t~a-------m~~~~~aa~~~GDd--~Y~~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~ 112 (456)
T d1c7ga_ 42 DIYIDLLTDSGTNA-------MSDKQWAGMMIGDE--AYAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIK 112 (456)
T ss_dssp GCSEECSCSSSCCC-------EEHHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCC
T ss_pred ceeeEcccCCCccc-------chHHHHHHHhccch--hccCCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcC
Confidence 35789888665321 22333333322221 2345677899999999999999999999999999999986641
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCC---CCCCCCCCceEeeCCCHHHHHhhcC---CCCeEEEE
Q 012368 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS---PFEPVMPGVNFVEYGNIEATRKLIQ---PGKTAAVF 251 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~le~~l~---~~~~a~vi 251 (465)
+++.|+ ....|+.........++.+.... ...+... ..+-...|+++|+++|+ ...+++++
T Consensus 113 -----------~Gd~Vi-~~~~f~~~~~~i~~~g~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~I~~~~~~~~~~i~ 179 (456)
T d1c7ga_ 113 -----------PGQYVA-GNMYFTTTRFHQEKNGATFVDIVRDEAHDASLN-LPFKGDIDLNKLATLIKEKGAENIAYIC 179 (456)
T ss_dssp -----------TTEEEE-ESSCCHHHHHHHHHTTEEEEECBCGGGGCTTCC-CSCTTCBCHHHHHHHHHHHCGGGEEEEE
T ss_pred -----------CCCeEe-cCcchHHHHHHHHHcCceeeecccccccccccc-CCccccCCHHHHHHHhhhcCCccceeEE
Confidence 566655 33334333221111111111000 0000000 00001128999999997 34577888
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC----------CCCCcc-c--cccccCCcccEEEec--cc
Q 012368 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL----------GRTGYL-W--AHEHYGIFPDIMTLA--KP 316 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~----------gr~g~~-~--~~~~~~~~pdi~t~s--K~ 316 (465)
++..++.+|..+.+.+.+++|+++|++||+.+|.|+++..- ++.+.. . ..+.++ ..|++++| |.
T Consensus 180 ~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~-~ad~~s~s~~K~ 258 (456)
T d1c7ga_ 180 LAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFS-YADGCTMSGKKD 258 (456)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHT-TCSEEEEETTTT
T ss_pred eeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhcccccc-ccccEEEecccc
Confidence 88777777777889999999999999999999999986410 000100 0 000111 24777665 66
Q ss_pred CCCccceeeEEeC-HHHHhhccCC----CCcCCCC-ChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC
Q 012368 317 LAGGLPIGAALVT-EKVASAINYG----DHGSTFA-GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 317 lg~G~~iG~v~~~-~~i~~~~~~~----~~~~t~~-~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
++++ ..|+++.+ +++.+.++.. ....+++ .+...+.+....+....++++.++..++.++|.+.|.+. ..+
T Consensus 259 ~~~~-~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~--g~~ 335 (456)
T d1c7ga_ 259 CLVN-IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA--GVP 335 (456)
T ss_dssp TCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred cccc-ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--cCC
Confidence 6532 22566655 4555544321 1222232 334444444444555445566666667778888887765 333
Q ss_pred CceeeeccceEEEEEec----------CChHHHHHHH-HHCCceEeecC----------------CCCEEEEecC-CCCc
Q 012368 391 HVKDVRGLGLIIGIEFD----------VSATPVVDAC-RDSGLLVLTAG----------------KGNVVRLVPP-LIIS 442 (465)
Q Consensus 391 ~~~~~~~~g~~~~i~~~----------~~~~~~~~~l-~~~Gv~v~~~~----------------~~~~lRi~~~-~~~t 442 (465)
.+. +..+....++.. .....+...+ .+.||...+.+ ....+||++| ...|
T Consensus 336 vv~--p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T 413 (456)
T d1c7ga_ 336 IVE--PTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYT 413 (456)
T ss_dssp BCS--SCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCC
T ss_pred ccc--CCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCC
Confidence 222 223334444421 1233444444 46788654321 0135899887 5669
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012368 443 EQELDQAVEILCKTLPVL 460 (465)
Q Consensus 443 ~e~i~~~l~~l~~~l~~~ 460 (465)
+++||.++++|+++.++.
T Consensus 414 ~e~iD~Vae~i~~v~~~~ 431 (456)
T d1c7ga_ 414 YAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp HHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999887643
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.75 E-value=6e-17 Score=161.16 Aligned_cols=293 Identities=9% Similarity=0.001 Sum_probs=177.0
Q ss_pred HHHHHHhhcC-CCeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCC
Q 012368 145 LAKRLVACSF-ADRVFFS-NTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP 222 (465)
Q Consensus 145 la~~l~~~~~-~~~v~~~-~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 222 (465)
+..++++.++ .....++ .|+++++.+++.+.+... +++.||+. ..-|.+...++...+.........+
T Consensus 118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~---------~~~~vi~s-~~~H~s~~k~~~~~g~~~~~v~~~~ 187 (434)
T d2z67a1 118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY---------GSNVVIYP-YASHKSPIKAVSFVGMNMRLVETVL 187 (434)
T ss_dssp HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH---------CCCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhh---------cCceEEEe-ccCCHHHHHHHHHhCCcceEEEeec
Confidence 3445566666 3444444 455556566666555432 35666655 4456655544443322111100000
Q ss_pred CCCCceEeeCCCHHHHHhhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc
Q 012368 223 VMPGVNFVEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298 (465)
Q Consensus 223 ~~~~~~~~~~~d~~~le~~l~----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~ 298 (465)
.+... ..|+++|+++|+ .+.+++|+++..+..+|.+.+ +++|.++|++||+++|+|++|.++......
T Consensus 188 --~~~~~--~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~ 259 (434)
T d2z67a1 188 --DGDRV--YVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLE 259 (434)
T ss_dssp --ETTEE--ECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred --CCCcc--CCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccc
Confidence 00000 138999999996 235677777776666777655 999999999999999999998643111000
Q ss_pred ccccccCCcccEEEec--ccCCCccceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 012368 299 WAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKG 375 (465)
Q Consensus 299 ~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~ 375 (465)
..........|+++++ |.++++...|++..+ +.+++.+.......+...+...+.+++..+......+..++..++.
T Consensus 260 ~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a 339 (434)
T d2z67a1 260 KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSK 339 (434)
T ss_dssp HHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 1111123456888766 998876666777654 6677777654444444444444444444444333355677778888
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeec--------------CCCCEEEEecCCCC
Q 012368 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--------------GKGNVVRLVPPLII 441 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~--------------~~~~~lRi~~~~~~ 441 (465)
+++++.|+++....+...........+.+.++.+..++...|.++||..... ...+.+|++++...
T Consensus 340 ~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~ 419 (434)
T d2z67a1 340 KLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGV 419 (434)
T ss_dssp HHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTC
T ss_pred HHHHHHHHHhhhhcCceecCCCCCceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCC
Confidence 8898888887654432111122233344445667888999999999854211 12367999999999
Q ss_pred cHHHHHHHHHHHHH
Q 012368 442 SEQELDQAVEILCK 455 (465)
Q Consensus 442 t~e~i~~~l~~l~~ 455 (465)
|+||||.++++|++
T Consensus 420 T~edID~~i~~L~k 433 (434)
T d2z67a1 420 RTEDIVNSVSKLEK 433 (434)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999975
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=4.8e-17 Score=159.03 Aligned_cols=284 Identities=12% Similarity=0.084 Sum_probs=176.8
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc-cCCCCcCCCCCCCCCCceEeeCC
Q 012368 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMPGVNFVEYG 233 (465)
Q Consensus 155 ~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 233 (465)
.+.|+||.|||++++.+++.+.... .++++|++.+.++++........ .+...... .....+.. .
T Consensus 57 ~~~i~~t~sgT~a~~~~~~~l~~~~--------~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~ 122 (382)
T d2bkwa1 57 SQPFVLAGSGTLGWDIFASNFILSK--------APNKNVLVVSTGTFSDRFADCLRSYGAQVDVV--RPLKIGES----V 122 (382)
T ss_dssp CEEEEEESCTTHHHHHHHHHHSCTT--------CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEE--CCSSTTSC----C
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhc--------CCCCceEEEEechhhhhhhhhccccccccccc--cccCCCCc----c
Confidence 4679999999999999998664211 25889999988887765332221 11100000 00001111 2
Q ss_pred CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCCCCCCccccccccCCcccEE
Q 012368 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311 (465)
Q Consensus 234 d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~ 311 (465)
+.+.+++++...++.++++..+..++|...+ ++.+.++|++++ +++++|-+++ +|. .. ++......|++
T Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~g~--~p--id~~~~giD~~ 193 (382)
T d2bkwa1 123 PLELITEKLSQNSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGC--EE--FEFDEWGVDFA 193 (382)
T ss_dssp CHHHHHHHHHHSCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTT--SC--CCTTTTTCSEE
T ss_pred chhHHHHHhhhccchheeeeecccccccccc----chhhhhhccccccceeeeeecccc-ccc--cc--ccccccCeeEE
Confidence 5677777776446778888888888888877 888888888775 9999999997 432 12 22233346888
Q ss_pred Eec--ccCCCccceeeEEeCHHHHhhccCC--------------------------CCcCCCCChHHHHHHHHHHHHHhc
Q 012368 312 TLA--KPLAGGLPIGAALVTEKVASAINYG--------------------------DHGSTFAGSPLVCNAAIAVLDKIS 363 (465)
Q Consensus 312 t~s--K~lg~G~~iG~v~~~~~i~~~~~~~--------------------------~~~~t~~~~~~~~~aa~a~L~~~~ 363 (465)
++| |+++|...+|+++.++++++.+.+. .....+..+.....+..++|+.+.
T Consensus 194 ~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~ 273 (382)
T d2bkwa1 194 LTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEIL 273 (382)
T ss_dssp EEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred eecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHH
Confidence 776 9998767789999999887655321 001123455566777778888775
Q ss_pred Cch---HHHHHHHHHHHHHHHHHHHHHcCCCceeee--ccceEEEEEecCChHHHHHHHHHCCceEeecCC----CCEEE
Q 012368 364 NPA---FLASVSKKGHYFKETLKQKLARNPHVKDVR--GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----GNVVR 434 (465)
Q Consensus 364 ~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~lR 434 (465)
++. ..++.+++.+++++.+.+............ ....+..+.. .+..++.+.|.++||.+..+.. ++++|
T Consensus 274 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~-~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~R 352 (382)
T d2bkwa1 274 EEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYV-ADPPDVIAFLKSHGVVIAGGIHKDIGPKYIR 352 (382)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEEC-SCHHHHHHHHHHTTEECBCCCCTTTGGGEEE
T ss_pred HhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcC-CCHHHHHHHHHHCCeEEECCCChhhcCCEEE
Confidence 433 333444445555555443211111100011 1123345554 3567888999999999986521 46799
Q ss_pred Ee-cCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 435 LV-PPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 435 i~-~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
|+ +.+..++++++.+++.|+.+...+++
T Consensus 353 i~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 353 IGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp ECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 98 55666788888888888766666654
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=1e-16 Score=159.92 Aligned_cols=304 Identities=11% Similarity=-0.017 Sum_probs=182.0
Q ss_pred HHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCC
Q 012368 142 QIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (465)
Q Consensus 142 ~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (465)
..++.+++++.+| .....++++|+++...++.+++...+ ++++.||+.. .-|.....++...+......
T Consensus 96 e~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~-------~~~~~vi~~~-~~H~s~~~a~~~~g~~~~~v 167 (445)
T d3bc8a1 96 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR-------PKAKYIIWPR-IDQKSCFKSMVTAGFEPVVI 167 (445)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC-------TTCCEEEEEC-CCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhC-------CCCCEEEEcC-cccHHHHHHHHHcCCeeEEE
Confidence 3456677777776 35678888888777665555443222 1345566554 44766655555433221110
Q ss_pred CCCCCCCCceEeeCCCHHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012368 219 PFEPVMPGVNFVEYGNIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~d~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
...+...... -|+++|+++|+ ...+++|++...+...|.+.+ +++|.++|++||++||+|+++.++...
T Consensus 168 ~~~~~~~~~~----id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~ 239 (445)
T d3bc8a1 168 ENVLEGDELR----TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSK 239 (445)
T ss_dssp CCEEETTEEE----CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred EeeccCcccc----cCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhhh
Confidence 0000001111 28999999886 335777777776666777665 999999999999999999998743110
Q ss_pred -Cc--cccccccCCcccEEEec--ccCCCccceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012368 296 -GY--LWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 296 -g~--~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
.. .+..... ..|++++| |.++++...|+++.+ +.+.+.+.............+.+.+.+..+.........+
T Consensus 240 ~~~~~~~~~~~~--~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 317 (445)
T d3bc8a1 240 CMHLIQQGARVG--RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLK 317 (445)
T ss_dssp HHHHHHHHHHHS--CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhccCcC--CcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHH
Confidence 01 1111111 25777665 988876667777765 4555555432222222233344444333333222245556
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CceeeeccceEEEEEec-------CChHHHHHHHHHCCceEee---------------
Q 012368 370 SVSKKGHYFKETLKQKLARNP-HVKDVRGLGLIIGIEFD-------VSATPVVDACRDSGLLVLT--------------- 426 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~-------~~~~~~~~~l~~~Gv~v~~--------------- 426 (465)
+..++.+++++.|.++...++ .+...+.......+.+. ....++...|.+.||....
T Consensus 318 ~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~ 397 (445)
T d3bc8a1 318 ERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTF 397 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhh
Confidence 667778888888888766554 22233334444444441 2345677788888874211
Q ss_pred --cC------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012368 427 --AG------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 427 --~~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.+ ....+|+.++..+|++|||.++++|+++++++++.
T Consensus 398 ~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~ 442 (445)
T d3bc8a1 398 RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 442 (445)
T ss_dssp ETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 00 12458999999999999999999999999998764
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.71 E-value=1.5e-16 Score=155.03 Aligned_cols=289 Identities=17% Similarity=0.107 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012368 140 IPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 140 ~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
+...+..+.|++.++ ...|+|+.||+++++.++..+.. +++++++....+++..............
T Consensus 51 ~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (377)
T d1vjoa_ 51 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE-----------PGDVVLIGVAGYFGNRLVDMAGRYGADV 119 (377)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccc-----------cccccceeeechhhhhhhhhhhhhcccc
Confidence 336777888888876 34788889999999998876541 5777887777665543322211110000
Q ss_pred CCCCCCCCCCceEeeC---CCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 217 RSPFEPVMPGVNFVEY---GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
. ....+. .+.+..+......++..+.+..+++.+|.+.+ +++|.++|+++|+++++|.+++ +|
T Consensus 120 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g 185 (377)
T d1vjoa_ 120 R---------TISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LG 185 (377)
T ss_dssp E---------EEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TT
T ss_pred c---------ccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeec----hhhhhhhhhhccceEEEecchh-hh
Confidence 0 001111 13344444433335667777777788888877 8899999999999999999996 43
Q ss_pred CCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCCC-------------------cCC-CCChHHH
Q 012368 294 RTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGDH-------------------GST-FAGSPLV 351 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~~-------------------~~t-~~~~~~~ 351 (465)
.. ..+.....+|++++| |+++|+-.+|+++.+++.++...+... ..+ ...+...
T Consensus 186 ~~----~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (377)
T d1vjoa_ 186 GV----PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINL 261 (377)
T ss_dssp TS----CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHH
T ss_pred hh----hhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceec
Confidence 22 233334456777766 667666677888888887775543211 011 1122333
Q ss_pred HHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHH-CCceEe
Q 012368 352 CNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRD-SGLLVL 425 (465)
Q Consensus 352 ~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~-~Gv~v~ 425 (465)
+.+..+++..+.. +...++.++...++.+.+.+...........+. ..++.+.+. .+..++...|++ +||.+.
T Consensus 262 ~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs-~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~ 340 (377)
T d1vjoa_ 262 YYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRL-PTLTTVCIPDGVDGKAVARRLLNEHNIEVG 340 (377)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC-SSEEEEECCTTCCHHHHHHHHHHHHCEECE
T ss_pred hhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcC-CeEEEEECCCCCCHHHHHHHHHhcCCEEEe
Confidence 3344444443322 334444555555555555443111111111122 334455552 467889888865 599887
Q ss_pred ecCC---CCEEEEec-CCCCcHHHHHHHHHHHHHHHH
Q 012368 426 TAGK---GNVVRLVP-PLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 426 ~~~~---~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.+.. ++.+|+++ ++..|+|||++++++|+++++
T Consensus 341 ~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 341 GGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp ECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred cCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 6432 47899984 667789999999999998873
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.70 E-value=3.8e-16 Score=152.76 Aligned_cols=312 Identities=15% Similarity=0.079 Sum_probs=186.4
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
-+|+|++|+.+.. ..|. ..-..+...+..+.|++.++ .+.|+|+.|||+|++.++..+.. +++
T Consensus 28 ~~~~V~~Am~~~~--~~hr-~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~-----------~~~ 93 (388)
T d2ch1a1 28 CSKRVLTAMTNTV--LSNF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE-----------EGD 93 (388)
T ss_dssp CCHHHHHHTTSCC--CCTT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC-----------TTC
T ss_pred CCHHHHHHhCcCC--CCCC-CHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcc-----------ccc
Confidence 3688887754321 1111 00112336677788888876 34577788999999999886652 467
Q ss_pred eEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCH
Q 012368 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
++++...+.++.......... ......++. .+.+..+..+...++.++.+..+.+++|.+.+
T Consensus 94 ~vl~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~-- 160 (388)
T d2ch1a1 94 RVLIAVNGIWAERAVEMSERY-----------GADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP-- 160 (388)
T ss_dssp EEEEEESSHHHHHHHHHHHHT-----------TCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC--
T ss_pred cccccccccccccchhhhhhh-----------cccccccccccccccchhhhhhhhccCCcceeeeeecccccccccc--
Confidence 777776666555432221100 000111111 14555555555445678888888888888877
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCC----
Q 012368 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD---- 340 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~---- 340 (465)
+++|.++|+++|+++++|.+++ +| +.. ++......|++++| |++++.-.+|+++.+++..+......
T Consensus 161 --~~~i~~~~~~~~~~~~vD~~ss-~g--~~p--id~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~ 233 (388)
T d2ch1a1 161 --LEGVGQICHQHDCLLIVDAVAS-LC--GVP--FYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSK 233 (388)
T ss_dssp --CTTHHHHHHHTTCEEEEECTTT-BT--TBC--CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCS
T ss_pred --hhhhcchhccccceeeeeeeec-cc--ccc--cchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccc
Confidence 7889999999999999999987 32 222 33334557888887 66766566788888887666443210
Q ss_pred ------------------C-cCCCCChHHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHHcCCCceee-ec
Q 012368 341 ------------------H-GSTFAGSPLVCNAAIAVLDKISNPAF---LASVSKKGHYFKETLKQKLARNPHVKDV-RG 397 (465)
Q Consensus 341 ------------------~-~~t~~~~~~~~~aa~a~L~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~ 397 (465)
. ...+..+.....++.++++.+..... ..+.++.....+..+.... ........ ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r 312 (388)
T d2ch1a1 234 VFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG-LDIFVKDPRHR 312 (388)
T ss_dssp CGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCSGGGB
T ss_pred cccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcc-cccccCCHHHh
Confidence 0 11223445556666666665533222 2222333333333333221 11111111 12
Q ss_pred cceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEe-cCCCCcHHHHHHHHHHHHHHHHHhh
Q 012368 398 LGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLV-PPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 398 ~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~-~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
...+..+.++ .++.++...|+++ ||.+.++. .++.+||+ ++...|+|+|+.++++|+++|+.+.
T Consensus 313 s~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 313 LPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp CTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence 2345566663 4678898898765 99887653 25789999 5667789999999999999998754
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=1.2e-14 Score=139.85 Aligned_cols=238 Identities=14% Similarity=0.151 Sum_probs=160.4
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+.+..++....|+++|++..+.+..+.++||..|+..++..+.. ++++||+.+..|+|.........
T Consensus 52 ~Y~R~~nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~-----------~Gd~vl~~~~~Yg~t~~l~~~~~- 119 (392)
T d1gc0a_ 52 FYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLR-----------PGDEVLLGNTLYGCTFAFLHHGI- 119 (392)
T ss_dssp -----CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSCCSHHHHHHHHTG-
T ss_pred eecCCCChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhcc-----------CCCeeecccccchhhhhhhhhhh-
Confidence 346677888999999999999988999999999999998876652 68999999999987764332211
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
....-.+.+++..|++++++++++ ++++|++|...+....+++ ++.|+++|+++|+++|+|..+..
T Consensus 120 --------~~~Gi~~~~~d~~d~~~~~~ai~~-~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at- 185 (392)
T d1gc0a_ 120 --------GEFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT- 185 (392)
T ss_dssp --------GGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH-
T ss_pred --------ccCCcccccCCccCHHHHHHhCCC-CCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccC-
Confidence 122234567777899999999985 6889999998777666665 99999999999999999997642
Q ss_pred CCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
+..+.-+....|++ +.+|.++| | .-.|.++++++.+..++.. .....-..+|..+...+..|+.+ +-
T Consensus 186 -----P~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL--~l 258 (392)
T d1gc0a_ 186 -----PYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL--NL 258 (392)
T ss_dssp -----HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--HH
T ss_pred -----ccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccH--HH
Confidence 11233333446766 56699987 5 7778888998877654211 11112234677666666656533 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEec
Q 012368 367 FLASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFD 407 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~ 407 (465)
.+++..++...+.+.| +.+|.+.. ..+.|.++.+++.
T Consensus 259 Rm~~~~~nA~~lA~~L----~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~ 313 (392)
T d1gc0a_ 259 RMDRHCANAQVLAEFL----ARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK 313 (392)
T ss_dssp HHHHHHHHHHHHHHHH----HTCTTEEEEEEC----------------CCTTEEEEEET
T ss_pred HHHHHHHHHHHHHHHH----HhCCCccEEeeccccCCcccccccccccCCCcEEEEEEe
Confidence 3444445555554444 44443322 2345778888884
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.66 E-value=9.7e-15 Score=146.13 Aligned_cols=307 Identities=11% Similarity=0.002 Sum_probs=172.9
Q ss_pred CHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccc-cccccC-CCCc
Q 012368 139 SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMG-ALALTS-KEHY 216 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~-~~~~~~-~~~~ 216 (465)
.....++++++++.+|.++++|+++|+++...|+..+. . .++++||+...+ |.+... ...+.+ .+.+
T Consensus 65 ~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~--~--------~~gd~Vi~~~~~-H~Sv~~~~~~l~~~~~~~ 133 (462)
T d1c4ka2 65 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSAL--V--------SNGDLVLFDRNN-HKSVYNSALAMAGGRPVY 133 (462)
T ss_dssp BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHH--C--------CTTCEEEEETTC-CHHHHHHHTTTTCCEEEE
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHh--c--------CCCCeEEecccc-hHHHHHHHHHHhcCCcee
Confidence 34577889999999999999999999887766654433 1 157777766655 555432 322222 1111
Q ss_pred CCCCCCCCCCceE-eeC--CCHHHH---------HhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEE
Q 012368 217 RSPFEPVMPGVNF-VEY--GNIEAT---------RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLV 284 (465)
Q Consensus 217 ~~~~~~~~~~~~~-~~~--~d~~~l---------e~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI 284 (465)
..+... ..+... .+. -+.+.+ ++++.. ++..+++..+++..|.+.+ +++|.++|++||++|+
T Consensus 134 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~ 207 (462)
T d1c4ka2 134 LQTNRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWK-RPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIE 207 (462)
T ss_dssp ECEEEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCS-CCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEE
T ss_pred eecccc-cccccCCCChHHhhHHHHHhhhhhhcHHhhhcc-CCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEE
Confidence 111000 011110 000 022223 333333 3344555566677788776 9999999999999999
Q ss_pred EeccccCCCCCCcc--ccccc----c--CCcccEEEec--ccCCCccceeeEEeCHHHHhhccCC----------CCcCC
Q 012368 285 FDEVQCGLGRTGYL--WAHEH----Y--GIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG----------DHGST 344 (465)
Q Consensus 285 ~DEv~~g~gr~g~~--~~~~~----~--~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~----------~~~~t 344 (465)
+||++......... ..... . ....|++++| |.+++.-..+++..+...+...... ....+
T Consensus 208 vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t 287 (462)
T d1c4ka2 208 FDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMS 287 (462)
T ss_dssp EECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSC
T ss_pred EechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhccc
Confidence 99998632111111 01111 1 1234777665 9887532233444444333211110 11233
Q ss_pred CCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCC-----Cc------------------------
Q 012368 345 FAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNP-----HV------------------------ 392 (465)
Q Consensus 345 ~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~------------------------ 392 (465)
.+++...+++..++...+.. +++.++..++.+++++++.++...+. .+
T Consensus 288 ~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 367 (462)
T d1c4ka2 288 TSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEK 367 (462)
T ss_dssp SSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCT
T ss_pred CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCC
Confidence 44555555555555554432 35567777788888888876532110 00
Q ss_pred -------eeeeccce-----EEEEEe-------------cCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHH
Q 012368 393 -------KDVRGLGL-----IIGIEF-------------DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD 447 (465)
Q Consensus 393 -------~~~~~~g~-----~~~i~~-------------~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~ 447 (465)
..+..... -+.+.. ...+..+.+.|.++||.+...+. +.+|+.++..+|++++|
T Consensus 368 ~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~-~~i~~~~s~~~T~edid 446 (462)
T d1c4ka2 368 GAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDL-NSILFLMTPAETPAKMN 446 (462)
T ss_dssp TCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECS-SEEEEECCTTCCHHHHH
T ss_pred cchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCC-CeEEEEecCCCCHHHHH
Confidence 00000000 012221 12456788889999998765554 78999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 012368 448 QAVEILCKTLPVLDSN 463 (465)
Q Consensus 448 ~~l~~l~~~l~~~~~~ 463 (465)
.++++|.++.+.+++|
T Consensus 447 ~li~aL~ei~r~~~~~ 462 (462)
T d1c4ka2 447 NLITQLLQLQRLIEED 462 (462)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999988877653
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.64 E-value=6.2e-14 Score=134.95 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=162.3
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+.+..++....|+++|++..+.+..+.++||..|+..++.... .++++||+.+..|.+........
T Consensus 55 ~~Y~R~~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll-----------~~Gd~vi~~~~~Yg~t~~~~~~~- 122 (397)
T d1y4ia1 55 YIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-----------QQGDHIVSASAIYGCTHAFLSHS- 122 (397)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSSCHHHHHHHHTH-
T ss_pred ceeeCCCCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhcc-----------CCCCeeeeecccccccchhhhcc-
Confidence 445677888899999999999998889999999999998887554 27999999999997665332111
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
+....-.+.+++..|++.+++++++ ++++|++|..-+....+.. +++|+++|+++|+++|+|..+..
T Consensus 123 --------l~~~Gi~~~~vd~~d~~~~~~~i~~-~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~at 189 (397)
T d1y4ia1 123 --------MPKFGINVRFVDAGKPEEIRAAMRP-ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMS 189 (397)
T ss_dssp --------HHHTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC
T ss_pred --------cCCCceEeeccCCCCHHHHHHhcCC-CCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCcccC
Confidence 1122244567777899999999975 6899999997665555554 99999999999999999997542
Q ss_pred CCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCc
Q 012368 292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
. +.+.-.....|++ +++|.++| + .-.|+++++++.+...+.. .....-..+|..+..++..|+.+ +
T Consensus 190 P------~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL--~ 261 (397)
T d1y4ia1 190 P------YCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL--G 261 (397)
T ss_dssp T------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH--H
T ss_pred c------ccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcH--H
Confidence 1 1233333335666 56799997 4 6678889998776543211 11112235677776666655533 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEec
Q 012368 366 AFLASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFD 407 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~ 407 (465)
-.+++..++...+.+. ++.+|.+.. ..+.|.++.+++.
T Consensus 262 lRm~~~~~nA~~lA~~----L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~ 317 (397)
T d1y4ia1 262 IRMERHCENALKIARF----LEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA 317 (397)
T ss_dssp HHHHHHHHHHHHHHHH----HHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHHHH----HHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEec
Confidence 2234444455444444 445554432 2346888888884
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=4.1e-14 Score=135.92 Aligned_cols=288 Identities=15% Similarity=0.164 Sum_probs=182.7
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012368 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+.+..++....|+++|++..+.+..+.++||..|+..++..+. .+++.|++.+..|.|.........
T Consensus 44 Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~-----------~~gd~vv~~~~~yg~t~~~~~~~~-- 110 (384)
T d1cs1a_ 44 YSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-----------KPGDLLVAPHDCYGGSYRLFDSLA-- 110 (384)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHHH--
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhcc-----------cccceecccccccchhhhhhhhhh--
Confidence 4667788899999999999998999999999999998887654 268999999988866543322111
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012368 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
......+.+++..|.+++++++.+ ++++|++|...++..-++. +++|+++|+++|+++|+|......
T Consensus 111 -------~~~g~~~~~~d~~d~~~~~~~~~~-~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~atP- 177 (384)
T d1cs1a_ 111 -------KRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSP- 177 (384)
T ss_dssp -------TTTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT-
T ss_pred -------cccccccccccCCCHHHHHhhccc-cccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEeccccCc-
Confidence 011233456666789999999975 5789999997666655555 999999999999999999986421
Q ss_pred CCCccccccccCCcccEE--EecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012368 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..+.......||+ +.+|.++| | .-.|+++++ +++.+.+...........+|..+...+..|+.+ .-.+
T Consensus 178 -----~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL--~lRm 250 (384)
T d1cs1a_ 178 -----ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL--VPRM 250 (384)
T ss_dssp -----TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH--HHHH
T ss_pred -----ccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchh--HHHH
Confidence 1222233335666 56799997 5 666777774 455454432111112235677666655555432 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCChHHHHHHHHHCCce-------
Q 012368 369 ASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVSATPVVDACRDSGLL------- 423 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~------- 423 (465)
++..++...+.+. ++.+|.+.. ..+.|.++.+++....++..+.+..-.++
T Consensus 251 ~~~~~nA~~lA~~----L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~a~SlG 326 (384)
T d1cs1a_ 251 ELAQRNAQAIVKY----LQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLG 326 (384)
T ss_dssp HHHHHHHHHHHHH----HTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCC
T ss_pred HHHHHHHHHHHHh----cccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcceeccccC
Confidence 4444444444443 445554332 23558888888854433333322221221
Q ss_pred ------Eeec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012368 424 ------VLTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 424 ------v~~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
..|. | .++.+|+++.+. +.+.+++-|+++|+.+++
T Consensus 327 g~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE----d~eDLi~Dl~~AL~aa~~ 383 (384)
T d1cs1a_ 327 GVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIE----DGEDLIADLENGFRAANK 383 (384)
T ss_dssp SSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHHHHTC
T ss_pred CccceeccccccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHHHhcC
Confidence 1111 1 136799987764 566677777777776654
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.64 E-value=4.7e-14 Score=135.95 Aligned_cols=289 Identities=16% Similarity=0.159 Sum_probs=183.9
Q ss_pred ccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc
Q 012368 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 131 ~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~ 210 (465)
.+.+.+..++....|+++|+++.+.+..+.++||..|+..++.... +++++||+.+..|++........
T Consensus 58 ~~~Y~R~~nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~-----------~~Gd~iv~~~~~Yg~t~~l~~~~ 126 (398)
T d1qgna_ 58 SFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALV-----------PAGGHIVTTTDCYRKTRIFIETI 126 (398)
T ss_dssp CCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS-----------CSSCEEEEETTSCHHHHHHHHHT
T ss_pred CceecCCCChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhcc-----------cccccccccccccchhhhhhccc
Confidence 3445667788899999999999999999999999999999888654 26899999999997665332221
Q ss_pred cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 012368 211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
. ......+.+++..|.++.++.+...++++|++|...+....++. +++|+++|+++|+++|+|....
T Consensus 127 ~---------~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~a 193 (398)
T d1qgna_ 127 L---------PKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFA 193 (398)
T ss_dssp G---------GGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred c---------cccccccccccccchhhhhhhhccccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceee
Confidence 1 11122344555456665555444457899999998766665555 9999999999999999998764
Q ss_pred CCCCCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 291 GLGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
.. ..+.-+....|+++ .+|.++| | .-.|++.++++++..+........-..+|..+...+..|+.+ +-
T Consensus 194 tP------~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL--~l 265 (398)
T d1qgna_ 194 TP------LNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTL--HL 265 (398)
T ss_dssp CT------TTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGH--HH
T ss_pred cc------ccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHH--HH
Confidence 21 23333444567774 6699997 5 667888888888776653221112234666666655555432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCChH---HHHHHHH--HCCce
Q 012368 367 FLASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVSAT---PVVDACR--DSGLL 423 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~~~---~~~~~l~--~~Gv~ 423 (465)
.+++..++...+.+.| +.+|.+.. ..|.|.++.+++....+ +|++.|. ..++-
T Consensus 266 Rm~~~~~nA~~lA~~L----~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~S 341 (398)
T d1qgna_ 266 RVQQQNSTALRMAEIL----EAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPS 341 (398)
T ss_dssp HHHHHHHHHHHHHHHH----HTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHH----HhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeC
Confidence 3344445555554444 44553332 24558888888854433 3444432 11221
Q ss_pred Ee--------ec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 424 VL--------TA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 424 v~--------~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+. |. | .++.+|+++.+. +.+.+++.|+++|+.
T Consensus 342 lGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlE----d~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 342 FGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVE----DFDDLKADILQALDS 397 (398)
T ss_dssp CCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSS----CHHHHHHHHHHHHHH
T ss_pred CCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEeccC----CHHHHHHHHHHHHhc
Confidence 11 10 1 136799988764 455566777777664
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=2.1e-14 Score=137.89 Aligned_cols=309 Identities=16% Similarity=0.086 Sum_probs=188.1
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ 192 (465)
-+|+|++|+.+.. ..|.. ........+..+.|++.++ .+.++++.|||+|+++++..+.. ++++
T Consensus 11 v~~~V~~am~~~~--~~hr~-~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~-----------~g~~ 76 (348)
T d1iuga_ 11 LHPKALEALARPQ--LHHRT-EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA-----------PGER 76 (348)
T ss_dssp CCHHHHHHHHSCC--CCTTS-HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC-----------TTCE
T ss_pred CCHHHHHHhcCCC--CCCCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhccc-----------cccc
Confidence 4578888765432 11110 0111225566677777776 45688899999999999886541 5778
Q ss_pred EEEEcCCcccCccccccccCCCCcCCCCCCCCCCce--EeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012368 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN--FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 193 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+++...++.|.......-. ....+. ..++.+...+++. ...++..|++..+..+.|.+.+ ++
T Consensus 77 vlv~~~G~f~~~~~~~a~~-----------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~v~~~h~eTstG~~~~----i~ 140 (348)
T d1iuga_ 77 VLVPVYGKFSERFYEIALE-----------AGLVVERLDYPYGDTPRPEDV-AKEGYAGLLLVHSETSTGALAD----LP 140 (348)
T ss_dssp EEEEECSHHHHHHHHHHHH-----------TTCEEEEEECCTTCCCCTTTS-CCSSCSEEEEESEETTTTEECC----HH
T ss_pred ceeecchHHHHHHHHHHHh-----------cCcccccccccCCCccccccc-cccCCCeeEEEecchhhhhhcc----HH
Confidence 8888877655432211100 001111 1112111112222 2335566777776667788777 89
Q ss_pred HHHHHHHHhC--CEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCC------
Q 012368 271 FLRDACDDAG--ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD------ 340 (465)
Q Consensus 271 ~l~~l~~~~g--~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~------ 340 (465)
+|.++|++|+ +++++|-+++ +|- .....+.++ .|++++| |+++|--.+|+++.+++.++.+.+..
T Consensus 141 ~i~~~~~~~~~~~l~~vDavss-~g~--~~i~~d~~~--iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~ 215 (348)
T d1iuga_ 141 ALARAFKEKNPEGLVGADMVTS-LLV--GEVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLA 215 (348)
T ss_dssp HHHHHHHHHCTTCEEEEECTTT-BTT--BCCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHH
T ss_pred HHHHHHHhhhccceeechhhhc-ccc--ccccccccc--CCEEEeccccceecCCceeeeeechHHHhhhcccccccchh
Confidence 9999999985 7899999887 431 223344444 5777665 99976556789999999888775421
Q ss_pred -------Cc-CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccceEEEEEec--CC
Q 012368 341 -------HG-STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLGLIIGIEFD--VS 409 (465)
Q Consensus 341 -------~~-~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~i~~~--~~ 409 (465)
.+ ..++.+...+.+..++|+.+.+. ..++. +..+...+.++.+....+...... ....+..+.++ .+
T Consensus 216 ~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~ 293 (348)
T d1iuga_ 216 RELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHL-ALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP 293 (348)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHH-HHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC
T ss_pred hhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCC
Confidence 11 22334455666777888876433 22332 233333344444443333211111 12235566663 46
Q ss_pred hHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 410 ATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..++.+.|.++|+.+.++.. +..+||...-..+.+|++.+++.|+++|+++
T Consensus 294 ~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 294 YARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp HHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 78899999999999877632 4689998555789999999999999999875
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=4.6e-14 Score=139.96 Aligned_cols=328 Identities=12% Similarity=-0.009 Sum_probs=190.2
Q ss_pred CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHhhcC-CC------eEEecCCHHHHHHHHHHHHHHHhhh----
Q 012368 115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSF-AD------RVFFSNTGTEANEAAIKFARKFQRH---- 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~-~~------~v~~~~sG~eA~~~al~~a~~~t~~---- 181 (465)
-+|++.+.+.+.+.+.......+| .+.+.++.++|++.++ ++ .-.+|+|||||+.+|+.++|.....
T Consensus 66 ~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~ 145 (450)
T d1pmma_ 66 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 145 (450)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhh
Confidence 568888888887765322222232 2336677788888886 21 2589999999999999988754321
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCc
Q 012368 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGI 261 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~ 261 (465)
.+.. ....+++. ...|.+..-+...-+..... .+..+.... -|+++|+++++. ++++|++.-.....|.
T Consensus 146 ~g~~---~~~~~~~~-~~~H~s~~Kaa~~~gi~~~~---v~~~~~~~~---~d~~~L~~~i~~-~t~~Vv~t~gtt~tG~ 214 (450)
T d1pmma_ 146 AGKP---TDKPNLVC-GPVQICWHKFARYWDVELRE---IPMRPGQLF---MDPKRMIEACDE-NTIGVVPTFGVTYTGN 214 (450)
T ss_dssp HTCC---CSCCEEEE-SSCCHHHHHHHHHTTCEEEE---CCCBTTBCS---CCHHHHHHHCCT-TEEEEECBBSCTTTCB
T ss_pred cCCC---CCCceEEe-cccHHHHHHHHHHcCCCceE---eeecCCCCc---CcHHHHHHHhhh-CceEEEeeeeeccCCC
Confidence 1111 12334554 45576655444433322111 111111111 289999999986 4666666555555666
Q ss_pred ccCCHHHHHHHHHH------HHHhCCEEEEeccccCCCCCCccccccc----cCC-cccEEEec--ccCCCccceeeEEe
Q 012368 262 YSATKEFLQFLRDA------CDDAGALLVFDEVQCGLGRTGYLWAHEH----YGI-FPDIMTLA--KPLAGGLPIGAALV 328 (465)
Q Consensus 262 ~~~~~~~l~~l~~l------~~~~g~llI~DEv~~g~gr~g~~~~~~~----~~~-~pdi~t~s--K~lg~G~~iG~v~~ 328 (465)
+-| +++|.++ |+++|+++++|-++.|+-. .+.... +++ ..|.++++ |.+.+.+.+|+++.
T Consensus 215 ~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~---p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~ 287 (450)
T d1pmma_ 215 YEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLA---PFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIW 287 (450)
T ss_dssp BCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH---HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEE
T ss_pred ccc----cchhhHHHHHHHHHhccCcEEEeehhhcccee---eeechhhhhhhcccceeEeecChhhccCCCCCeeEEEe
Confidence 654 4444444 5678999999999886521 111111 122 36778776 87777788999998
Q ss_pred CHHHH-hh-c--cCC----C---CcCCCCChHHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012368 329 TEKVA-SA-I--NYG----D---HGSTFAGSPLVCNAAIAVLDKISNPA---FLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 329 ~~~i~-~~-~--~~~----~---~~~t~~~~~~~~~aa~a~L~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
+.... .. + ... . ....++.+.....+..+++..+..+. ..++..++.+++.+.| .+.+.+..
T Consensus 288 r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L----~~~~~~el 363 (450)
T d1pmma_ 288 RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEI----AKLGPYEF 363 (450)
T ss_dssp SSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTSCEEE
T ss_pred cChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH----HhCCCeEE
Confidence 75422 11 1 000 0 11112222233334455555544433 3444444455554444 44553322
Q ss_pred e-e--c-c-ceEEEEEec------CChHHHHHHHHHCCceEee----cC--CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 395 V-R--G-L-GLIIGIEFD------VSATPVVDACRDSGLLVLT----AG--KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 395 ~-~--~-~-g~~~~i~~~------~~~~~~~~~l~~~Gv~v~~----~~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+ + . . -..+.+.+. .+..++.+.|.++|..+.. .. ...++|+.+.-..|+++++++++.|++++
T Consensus 364 ~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v 443 (450)
T d1pmma_ 364 ICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASL 443 (450)
T ss_dssp EEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 2 1 1 1 123455552 2456789999999976632 11 13579999988889999999999999999
Q ss_pred HHhhhcC
Q 012368 458 PVLDSNS 464 (465)
Q Consensus 458 ~~~~~~~ 464 (465)
+.++++|
T Consensus 444 ~~l~~~p 450 (450)
T d1pmma_ 444 KYLSDHP 450 (450)
T ss_dssp HHHHHCC
T ss_pred HHHHhCc
Confidence 9999876
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.63 E-value=2e-14 Score=139.75 Aligned_cols=302 Identities=14% Similarity=0.071 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
++-++++.+.++..... .-+...+++++++++++.+.+++++|||.|+.+|++++. . .++++||+.
T Consensus 12 ~~~~~~~~~~~~~~~~~----~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~--~--------~~gdeVi~~ 77 (376)
T d1mdoa_ 12 AEELAAVKTVLDSGWIT----TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG--I--------GEGDEVITP 77 (376)
T ss_dssp HHHHHHHHHHHHHTCCS----SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCc----CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhC--C--------CCCCEEEEe
Confidence 55668888888764221 234578899999999999999999999999999998652 1 268899999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
..+|+.........+..+.+. ...++.. .-|+++|++++++ ++++|++.... |...+ +++|.++|
T Consensus 78 ~~~~~~~~~ai~~~g~~pv~~----d~~~~~~---~~d~~~l~~~i~~-~tkaIi~~h~~---G~~~~----~~~i~~i~ 142 (376)
T d1mdoa_ 78 SMTWVSTLNMIVLLGANPVMV----DVDRDTL---MVTPEHIEAAITP-QTKAIIPVHYA---GAPAD----LDAIYALG 142 (376)
T ss_dssp SSSCHHHHHHHHHTTCEEEEE----CBCTTTC---CBCHHHHHHHCCT-TEEEECCBCGG---GCCCC----HHHHHHHH
T ss_pred cccccccccchhccccceeee----ccccccc---CCCHHHHHHhcCC-CCeEEEEeCCC---CCccc----hhHHHHHH
Confidence 999987776666665544432 1111111 1289999999986 46777765544 33333 88999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCCccceeeEEeC-HHHHhhccCCC-------------
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT-EKVASAINYGD------------- 340 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~-~~i~~~~~~~~------------- 340 (465)
++||++||.|.+|+ +|..=.......++ ..+.+| +|.++.|- .|+++.+ +++.+.+....
T Consensus 143 ~~~~i~vIeD~a~a-~g~~~~~~~~g~~g--~~~~Sf~~~K~l~~g~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~ 218 (376)
T d1mdoa_ 143 ERYGIPVIEDAAHA-TGTSYKGRHIGARG--TAIFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQS 218 (376)
T ss_dssp HHHTCCBCEECTTC-TTCEETTEETTSSS--EEEEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTTEECC------
T ss_pred HhcCceEEeccchh-ccCeeCCeeccccc--CccccCCCcCCCCCCC-CCEEEEechhHHHHHHhhcccCCccccccccc
Confidence 99999999999997 43210000111122 123344 38887542 3667665 45544432110
Q ss_pred -----------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee------eeccceEEE
Q 012368 341 -----------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD------VRGLGLIIG 403 (465)
Q Consensus 341 -----------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~~~g~~~~ 403 (465)
.+..+..+.+.++.+..-|+.+ +++.++-++..+++.+.|.+ .+.... ....-..+.
T Consensus 219 ~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~~~~~~ 292 (376)
T d1mdoa_ 219 GGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMAD----LPFQPLSLPSWEHIHAWHLFI 292 (376)
T ss_dssp -----CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHT----SSCEECCCCSSCEECCCSCEE
T ss_pred ccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhccc----ccccccccccccccccccccc
Confidence 1122334555555555555533 44555555566666555544 332111 111111122
Q ss_pred EEec-----CChHHHHHHHHHCCceEeecC--------------C----------CCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 404 IEFD-----VSATPVVDACRDSGLLVLTAG--------------K----------GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 404 i~~~-----~~~~~~~~~l~~~Gv~v~~~~--------------~----------~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+.++ ....++.+.|.++||.+...- . .+.+.+=.....|++|++..++.|+
T Consensus 293 ~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~ 372 (376)
T d1mdoa_ 293 IRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALH 372 (376)
T ss_dssp EECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 2221 234579999999999765210 0 2346554445669999999999998
Q ss_pred HHH
Q 012368 455 KTL 457 (465)
Q Consensus 455 ~~l 457 (465)
+++
T Consensus 373 ~i~ 375 (376)
T d1mdoa_ 373 QIA 375 (376)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.60 E-value=1.4e-13 Score=132.15 Aligned_cols=286 Identities=17% Similarity=0.210 Sum_probs=177.7
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+.+..++....|+++|+...+.+..+.++||..|+..++.++. ++++||+.++.|.+........
T Consensus 42 ~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisall~ll~------------~Gd~vv~~~~~Yg~t~~l~~~~-- 107 (380)
T d1ibja_ 42 DYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLIK------------NGEEIVAGDDVYGGSDRLLSQV-- 107 (380)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTSC------------TTCEEEEESSCCHHHHHHHHHT--
T ss_pred eeeCCCChHHHHHHHHHHHHcCCceEEehhhHHHHHHHHHHhhC------------CCCEEEEEecccccccchhhhh--
Confidence 35667788899999999999998899999999999864332221 6899999998885543222111
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
+......+.+++..|++++++++++ ++++|++|...++...+++ +++|+++|+++|+++|+|....+.
T Consensus 108 -------~~~~gi~~~~~d~~~~~~~~~ai~~-~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~atP 175 (380)
T d1ibja_ 108 -------VPRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMSP 175 (380)
T ss_dssp -------SGGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTCT
T ss_pred -------hccccccccccCcchHHHHHHHhcc-CccEEEecccccccccccc----HHHHHHHHHHcCCeEEeecccccc
Confidence 1122234556777899999999975 6899999998776666665 999999999999999999986532
Q ss_pred CCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012368 293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
..+.......|++ +++|.++| | .-.|+++.+ +++.+.+........-..+|..+......|+.+ +-.
T Consensus 176 ------~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl--~lR 247 (380)
T d1ibja_ 176 ------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM--ALR 247 (380)
T ss_dssp ------TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH--HHH
T ss_pred ------ccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhh--hhh
Confidence 1222233345666 56799997 5 566776665 556665542211111224666666666555533 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecC--ChHHHHHHHH--HCCce--
Q 012368 368 LASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDV--SATPVVDACR--DSGLL-- 423 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~--~~~~~~~~l~--~~Gv~-- 423 (465)
+++..++...+.+.| +++|.+.. ..+.|.++.+.+.. .+.+|.+.|. ..++-
T Consensus 248 m~~~~~nA~~lA~~L----~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~SlG 323 (380)
T d1ibja_ 248 IEKQQENARKIAMYL----SSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFG 323 (380)
T ss_dssp HHHHHHHHHHHHHHH----HTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCC
T ss_pred HHHHHHHHHHHHHHH----HhCCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcCeEeeccC
Confidence 444455555554444 44553332 23456667776631 1233434332 11211
Q ss_pred ------Eeec---------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 424 ------VLTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 424 ------v~~~---------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..|. | .++.+|+++.+. +.+.+++-|+++|+.+
T Consensus 324 ~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE----~~eDLi~Dl~qAl~~l 378 (380)
T d1ibja_ 324 SVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIE----DVDDLISDLDIAFKTF 378 (380)
T ss_dssp SSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSS----CHHHHHHHHHHHHHSC
T ss_pred CccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEeccC----CHHHHHHHHHHHHHhc
Confidence 1111 0 135699988764 5556777777777653
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.6e-13 Score=130.81 Aligned_cols=287 Identities=13% Similarity=0.072 Sum_probs=180.4
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+.+..++....|+++|++..+.+.++.++||..|+..++..+.. ++++||+....|.|........
T Consensus 51 ~Y~R~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~-----------~Gd~iv~~~~~Yg~T~~l~~~~-- 117 (391)
T d1cl1a_ 51 FYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIE-----------QGDHVLMTNTAYEPSQDFCSKI-- 117 (391)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTSCHHHHHHHHHT--
T ss_pred EeECCCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccC-----------CCCeEEEecccccchhhhhhhc--
Confidence 456678899999999999999999999999999999998876542 6899999988885543222111
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEecccc
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQC 290 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~~ 290 (465)
+......+.+++..|.+++++++++ ++++|++|...++...++. +++|+++|+++ |+++|+|....
T Consensus 118 -------l~~~Gi~~~~~d~~d~~~~~~~i~~-~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~a 185 (391)
T d1cl1a_ 118 -------LSKLGVTTSWFDPLIGADIVKHLQP-NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWA 185 (391)
T ss_dssp -------GGGGTCEEEEECTTCGGGGGGTCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTT
T ss_pred -------ccccccccccccCcccccccccccc-ccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEecccc
Confidence 1122234566777789999999975 6889999987666555554 88999999775 99999999865
Q ss_pred CCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch
Q 012368 291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
.. ..+.-.....|++ +.+|.++| | .-.|.++.+++....+........-..+|..+......|+.+ .-
T Consensus 186 tP------~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL--~l 257 (391)
T d1cl1a_ 186 AG------VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTL--GV 257 (391)
T ss_dssp TT------TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTH--HH
T ss_pred ch------hhhcccccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhH--HH
Confidence 32 1222233345666 56799997 5 667888888776665532211111224566555555444432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceee------------------eccceEEEEEecC--ChHHHHHHHHH-----CC
Q 012368 367 FLASVSKKGHYFKETLKQKLARNPHVKDV------------------RGLGLIIGIEFDV--SATPVVDACRD-----SG 421 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~i~~~~--~~~~~~~~l~~-----~G 421 (465)
.+++..++...+.+. ++++|.+..| .+.|.++.+.+.. ..+++.+.+-. .+
T Consensus 258 R~~~~~~nA~~vA~~----L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L~l~~~a 333 (391)
T d1cl1a_ 258 RLRQHHESSLKVAEW----LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMA 333 (391)
T ss_dssp HHHHHHHHHHHHHHH----HHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCBCC
T ss_pred HHHHHHHHHHHHHHH----HHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcCCcceEe
Confidence 234444444444443 4556644332 3556677777742 33333333221 12
Q ss_pred ceEe--------ec-------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 422 LLVL--------TA-------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 422 v~v~--------~~-------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+-+. |. + .++.+|+++.+ |+++.+++-|+++|+++
T Consensus 334 ~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 334 YSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI 390 (391)
T ss_dssp SCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred eCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence 2211 10 1 13679998776 45666777777777654
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.55 E-value=1.5e-12 Score=125.51 Aligned_cols=240 Identities=14% Similarity=0.104 Sum_probs=156.7
Q ss_pred ccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc
Q 012368 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 131 ~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~ 210 (465)
.+.+.+..++....|+++|++..+.+..+.++||..|+..++..... +++.|++.+..|.|........
T Consensus 50 ~~~YsR~~nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~~-----------~gd~vv~~~~~yg~t~~~~~~~ 118 (394)
T d1e5ea_ 50 GYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILK-----------AGDHLISDECLYGCTHALFEHA 118 (394)
T ss_dssp SCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHHHHHHTH
T ss_pred CceecCCCCHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhcc-----------cccccccccceeehhhHhHHHH
Confidence 34456778899999999999999988999999999999988765542 6888988888885544222211
Q ss_pred cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH-HhCCEEEEeccc
Q 012368 211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD-DAGALLVFDEVQ 289 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~ 289 (465)
+......+.+++..|.+++++++++ ++++|++|...++...++. ++++.+.++ ++|+++|+|...
T Consensus 119 ---------~~~~gi~~~~~d~~d~~~~~~~i~~-~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~ 184 (394)
T d1e5ea_ 119 ---------LTKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTF 184 (394)
T ss_dssp ---------HHHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTT
T ss_pred ---------hhccceeeeccCCCCHHHHHHhhcc-cccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCcc
Confidence 1122345667777899999999975 5788999976665555554 777777665 578999999976
Q ss_pred cCCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhc
Q 012368 290 CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKIS 363 (465)
Q Consensus 290 ~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~ 363 (465)
... ..+.-+....|++ +.+|.++| + .-.|+++++++.+...+.. .....-..+|..+...+-.|+.+
T Consensus 185 atP------~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL- 257 (394)
T d1e5ea_ 185 CSP------MITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL- 257 (394)
T ss_dssp TCT------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH-
T ss_pred cCc------ccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhH-
Confidence 532 1233333345766 56799998 5 7778888888776544321 11112234666666655555533
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHcCCCceee------------------eccceEEEEEec
Q 012368 364 NPAFLASVSKKGHYFKETLKQKLARNPHVKDV------------------RGLGLIIGIEFD 407 (465)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~i~~~ 407 (465)
+-.+++..++...+.+.| +.+|.+..| ++.|.++.+++.
T Consensus 258 -~lRm~r~~~nA~~lA~~L----~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~ 314 (394)
T d1e5ea_ 258 -NIRMKAESENAMKVAEYL----KSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK 314 (394)
T ss_dssp -HHHHHHHHHHHHHHHHHH----HTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET
T ss_pred -HHHHHHHHHHHHHHHHHH----hhcCCccEEeCCCcccccchhhhhcccccCCCeeeeecc
Confidence 223444445555554444 455544322 345888888873
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.53 E-value=6.3e-13 Score=129.37 Aligned_cols=305 Identities=18% Similarity=0.171 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
.+-.+++.+.++......+ .-+...++++++++++|...+++++||+.|+.+|++++- . .++++||+.
T Consensus 13 ~~~~~~~~~~l~~g~~~~~--~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~-~---------~~gdeVi~p 80 (384)
T d1b9ha_ 13 DAERNGLVRALEQGQWWRM--GGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG-V---------GPGTEVIVP 80 (384)
T ss_dssp HHHHHHHHHHHHTSCCBTT--TCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT-C---------CTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCeeec--CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC-C---------CCCCEEEEe
Confidence 4567888888887532112 224578899999999999999999999999999998642 1 268899999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
.-+|......+...+..+.+. ...+... ..|++.+++.+.+ ++++|++....+.. .. +.+|.++|
T Consensus 81 ~~t~~a~~~ai~~~g~~p~~~----d~~~~~~---~~d~~~~~~~i~~-~tk~i~~~~~~g~~---~d----~~~i~~~~ 145 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLGAVTVPV----DVDAATY---NLDPEAVAAAVTP-RTKVIMPVHMAGLM---AD----MDALAKIS 145 (384)
T ss_dssp SSSCTHHHHHHHHTTCEEEEE----CBCTTTC---CBCHHHHHHHCCT-TEEEECCBCGGGCC---CC----HHHHHHHH
T ss_pred ccccccccccccccccccccc----ccccccc---ccchhhhcccccc-cccccccccccccc---cc----cccchhhh
Confidence 988866655555444443322 1111111 0278999999975 57777766555432 22 88999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEE--e--cccCCCccceeeEEeC-HHHHhhccC----C--------
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--L--AKPLAGGLPIGAALVT-EKVASAINY----G-------- 339 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~--sK~lg~G~~iG~v~~~-~~i~~~~~~----~-------- 339 (465)
++++++||.|.+++ +|-. +.-...|-.-|+.+ | +|.++.| ..|+++.+ +++.+.++. +
T Consensus 146 ~~~~i~lieD~a~a-~ga~---~~g~~~g~~g~~~~~Sf~~~K~i~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~ 220 (384)
T d1b9ha_ 146 ADTGVPLLQDAAHA-HGAR---WQGKRVGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDR 220 (384)
T ss_dssp HHHTCCBCEECTTC-TTCE---ETTEEGGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCS
T ss_pred hhhhhhhhhhhcee-cccc---cCCEecCcccccceeccccccccccc-ccchhhhhhHHHHHHHHHHHhcCCCCccccc
Confidence 99999999999997 3221 10111122224444 3 4888754 34666664 444443311 0
Q ss_pred -----CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee-------eeccceEEEEEec
Q 012368 340 -----DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD-------VRGLGLIIGIEFD 407 (465)
Q Consensus 340 -----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-------~~~~g~~~~i~~~ 407 (465)
..+..+-.+.+.++.+..-|+.+ ++..++-+++.+++.+.|. ..+.+.. ......++.+.+.
T Consensus 221 ~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~----~~~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (384)
T d1b9ha_ 221 RYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLG----AIDGVVPQGGDVRADRNSHYMAMFRIP 294 (384)
T ss_dssp SCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHH----TSTTCEECCCCTTCCBCCCSEEEEECT
T ss_pred cccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhh----cccccccccccccccccccccccceec
Confidence 01233445677666666655533 3334444444445444443 3332211 1111223334332
Q ss_pred C-C---hHHHHHHHHHCCceEeecCC--------------------------------CCEEEEecCCCCc-HHHHHHHH
Q 012368 408 V-S---ATPVVDACRDSGLLVLTAGK--------------------------------GNVVRLVPPLIIS-EQELDQAV 450 (465)
Q Consensus 408 ~-~---~~~~~~~l~~~Gv~v~~~~~--------------------------------~~~lRi~~~~~~t-~e~i~~~l 450 (465)
. . -.++.+.|.++||-+..... .+.+.+=.+...| ++|++..+
T Consensus 295 ~~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~ 374 (384)
T d1b9ha_ 295 GLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATA 374 (384)
T ss_dssp TCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHH
T ss_pred ccccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHH
Confidence 1 1 24699999999998753210 0235443334455 67999999
Q ss_pred HHHHHHHHH
Q 012368 451 EILCKTLPV 459 (465)
Q Consensus 451 ~~l~~~l~~ 459 (465)
+.|++++.+
T Consensus 375 ~~i~~~l~~ 383 (384)
T d1b9ha_ 375 EIIADAVAR 383 (384)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998864
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.52 E-value=1.2e-12 Score=123.48 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=150.1
Q ss_pred HHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC
Q 012368 144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV 223 (465)
Q Consensus 144 ~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 223 (465)
+|+++|++..+.+..+.++||..|+..++..+.. ++++||+.+..|.|........ +...
T Consensus 2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~-----------~Gd~iv~~~~~Yg~t~~~~~~~---------l~~~ 61 (331)
T d1pffa_ 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLK-----------AGDHLISDDCLYGCTHALFEHQ---------LRKF 61 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHHHHHHTH---------HHHT
T ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHHHHHHHH---------HHhc
Confidence 5788999999989999999999999988875542 6899999999997654332211 1122
Q ss_pred CCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCCCCCCcccccc
Q 012368 224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTGYLWAHE 302 (465)
Q Consensus 224 ~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~gr~g~~~~~~ 302 (465)
...+.+++..|++.+++++++ ++++|++|...++...++. ++.+.+++ +++|+++|+|..... +..+.
T Consensus 62 gi~~~~~d~~d~~~~~~~i~~-~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~at------p~~~~ 130 (331)
T d1pffa_ 62 GVEVDFIDMAVPGNIEKHLKP-NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFAS------PILTN 130 (331)
T ss_dssp TCEEEEECTTSTTHHHHTCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTH------HHHCC
T ss_pred CeEEEEecccchhhHhhhccc-ccceeeeeccccccccccc----chhhhhhhhcccCceEEeeccccc------ccccc
Confidence 345677888899999999975 5788888887666555554 77778774 678999999987542 12233
Q ss_pred ccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccC--CCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 012368 303 HYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINY--GDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGH 376 (465)
Q Consensus 303 ~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~--~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~ 376 (465)
......|++ +.+|.++| | .-.|+++++++....... ......-..+|..+......|+.+ +-.+++..++..
T Consensus 131 pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl--~~Rm~~~~~nA~ 208 (331)
T d1pffa_ 131 PLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTL--DMRVKRAAENAQ 208 (331)
T ss_dssp GGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred ccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 333345776 46699998 5 667888888765544321 111112235677777777666654 223444555555
Q ss_pred HHHHHHHHHHHcCCCcee------------------eeccceEEEEEec
Q 012368 377 YFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFD 407 (465)
Q Consensus 377 ~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~ 407 (465)
.+.+.|+ .+|.+.. ..+.|.++.++++
T Consensus 209 ~lA~~L~----~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~ 253 (331)
T d1pffa_ 209 KVAEFLH----EHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD 253 (331)
T ss_dssp HHHHHHH----HCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS
T ss_pred HHHHhhh----hCCcEEeeccccccCccHHHHHhhcccccCcccceeec
Confidence 5554444 4443322 2456888888884
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=1.4e-12 Score=125.69 Aligned_cols=215 Identities=13% Similarity=0.120 Sum_probs=139.5
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012368 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+.+..++....|+++|+++.+.+..+.++||..|+..++.++. ++++||+....|.+........-
T Consensus 48 ~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l~~l~------------~gd~iv~~~~~yg~t~~~~~~~l- 114 (393)
T d1n8pa_ 48 EYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQSLP------------QGSHAVSIGDVYGGTHRYFTKVA- 114 (393)
T ss_dssp CBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHTSC------------SSCEEEEESSCCHHHHHHHHHTS-
T ss_pred eeeCCCChHHHHHHHHHHHHhCCceEEEecCchhHHHhhhhccc------------CCCeeeeeeeecccchhhhhhhh-
Confidence 34667788899999999999998899999999888865543322 58899999999976543322211
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH----HhCCEEEEecc
Q 012368 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD----DAGALLVFDEV 288 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv 288 (465)
......+.+++ .+.+++++++++ ++++|++|...+....++. +++|+++|+ ++|+++|+|..
T Consensus 115 --------~~~gi~~~~~~-~~~~~~~~~i~~-~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT 180 (393)
T d1n8pa_ 115 --------NAHGVETSFTN-DLLNDLPQLIKE-NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNT 180 (393)
T ss_dssp --------TTTCSCCEEES-SHHHHHHHHSCS-SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECT
T ss_pred --------hcccceeEEee-cchHHHHHHhhh-hcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecC
Confidence 11223344554 356889999975 6899999997666555554 888888888 77899999997
Q ss_pred ccCCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc
Q 012368 289 QCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS 363 (465)
Q Consensus 289 ~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~ 363 (465)
+.. +..+.-.....|++ +.+|.++| | .-.|+++.+ +++.+.+........-..+|..+...+..|+.+
T Consensus 181 ~at------P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl- 253 (393)
T d1n8pa_ 181 FLS------PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTL- 253 (393)
T ss_dssp TTH------HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH-
T ss_pred ccC------cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcch-
Confidence 542 11233333345766 56799997 5 677877654 566666643211112234677666655555533
Q ss_pred CchHHHHHHHHHHHHHHHH
Q 012368 364 NPAFLASVSKKGHYFKETL 382 (465)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~l 382 (465)
+-.+++..++...+.+.|
T Consensus 254 -~lR~~~~~~nA~~lA~~L 271 (393)
T d1n8pa_ 254 -HLRVRQAALSANKIAEFL 271 (393)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHH
Confidence 223444445555554444
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.49 E-value=2.7e-12 Score=127.70 Aligned_cols=308 Identities=12% Similarity=0.039 Sum_probs=175.0
Q ss_pred HHHHHHHHHhhcCC-----------CeEEecCCHHHHHHHHHHHHHHHhhh----cCCCCC---CCCceEEEEcCCcccC
Q 012368 142 QIELAKRLVACSFA-----------DRVFFSNTGTEANEAAIKFARKFQRH----SNPDSK---EPATEFVSFTNSFHGR 203 (465)
Q Consensus 142 ~~~la~~l~~~~~~-----------~~v~~~~sG~eA~~~al~~a~~~t~~----~~~~~~---~~~~~ii~~~~~yhg~ 203 (465)
+.++.++|++.+|. ..-++++||++||..|+.+||..... ....-. ..++.+++.+..-|.+
T Consensus 115 E~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~S 194 (476)
T d1js3a_ 115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS 194 (476)
T ss_dssp HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH
T ss_pred HHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHH
Confidence 66778888888762 24689999999999999999864310 000000 0023455565555665
Q ss_pred ccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC-----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q 012368 204 TMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD 278 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-----~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 278 (465)
..-+..+.+..... .+...+.. -|+++|+++|+ ...+.+|+..--....|.+-| +++|.++|++
T Consensus 195 i~ka~~~lGl~~~~---v~~d~~~~----md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp----l~~I~~i~~~ 263 (476)
T d1js3a_ 195 VERAGLIGGVKLKA---IPSDGKFA----MRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHE 263 (476)
T ss_dssp HHHHHHHHTCEEEE---ECCCTTSC----CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHH
T ss_pred HHHHHHhcCceEEE---eccCCCCC----cCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----HHHHHHHHHh
Confidence 55444433322111 11111111 18999999996 223455555555566677766 9999999999
Q ss_pred hCCEEEEeccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeCHH--HHhhccCC--C--------C--
Q 012368 279 AGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTEK--VASAINYG--D--------H-- 341 (465)
Q Consensus 279 ~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~~--i~~~~~~~--~--------~-- 341 (465)
||++|++|-++.|+...-...-....++ ..|.+++. |.+...+..|+++.++. +...+... . .
T Consensus 264 ~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (476)
T d1js3a_ 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLI 343 (476)
T ss_dssp TTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSC
T ss_pred cCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhcccccccccc
Confidence 9999999999887532221111112244 36888875 99888788899988742 22222110 0 0
Q ss_pred ----cCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEecCC---hHH
Q 012368 342 ----GSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFDVS---ATP 412 (465)
Q Consensus 342 ----~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~~---~~~ 412 (465)
..+. ++-+........+++.+..+.+.+.+.+.. .+.+.+.+.+.+.|.+..+ +..-+++.|.+... ..+
T Consensus 344 ~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~-~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~n~~ 422 (476)
T d1js3a_ 344 TDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHV-QLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEA 422 (476)
T ss_dssp CCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHH
T ss_pred ccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHH-HHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHHHHH
Confidence 0011 111122223344555554444433333322 2333444444455543322 22233455555211 245
Q ss_pred HHHHHHHCC-ceEeecCC--CCEEEEecC-CCCcHHHHHHHHHHHHHHHHHhh
Q 012368 413 VVDACRDSG-LLVLTAGK--GNVVRLVPP-LIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 413 ~~~~l~~~G-v~v~~~~~--~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.++|.+.| +++.+... ..++|+++. ..++++||+.+++.|++..+++.
T Consensus 423 l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 423 LLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475 (476)
T ss_dssp HHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 777788777 44554321 247899864 66789999999999999888763
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=2.6e-12 Score=124.41 Aligned_cols=169 Identities=20% Similarity=0.143 Sum_probs=119.5
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012368 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+.+..++....|+++|++..+.+..+.++||..|+..++.... +++++||+.+..|+|.........
T Consensus 50 ~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l~-----------~~gd~il~~~~~Yg~t~~l~~~~~ 118 (421)
T d2ctza1 50 NIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-----------QAGDNIVSTPNLYGGTFNQFKVTL 118 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSCCCHHHHHHHHTHH
T ss_pred ceecCCCCHHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhhc-----------ccccceeecCCcCCchhHHHHHHH
Confidence 445677888899999999999998999999999999988887655 268999999999977653322111
Q ss_pred CCCCcCCCCCCCCCCceEeeCCC-HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 012368 212 SKEHYRSPFEPVMPGVNFVEYGN-IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
......+.+++..| .+..++.++ .++++|++|...++..-++. ++.|+++|+++|+++|+|....
T Consensus 119 ---------~~~gi~~~~~d~~~~~~~~~~~~~-~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a 184 (421)
T d2ctza1 119 ---------KRLGIEVRFTSREERPEEFLALTD-EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFG 184 (421)
T ss_dssp ---------HHTTCEEEECCTTCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGG
T ss_pred ---------hhccccceecccccCcchhccccC-CCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEeccccc
Confidence 01112334444334 355566665 47899999998766665555 9999999999999999999863
Q ss_pred CCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCH
Q 012368 291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTE 330 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~ 330 (465)
. .+..+.-.....|++ +.+|.++| | .-.|+++.++
T Consensus 185 ~-----tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~ 223 (421)
T d2ctza1 185 M-----GGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG 223 (421)
T ss_dssp G-----GGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred c-----cceeccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence 1 111222333345776 56799998 5 6667777654
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.46 E-value=1.3e-11 Score=119.26 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012368 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
.+-.+++.+.++.... ..-+...++++++++.+|.+.+++++||+.|+.+|++++....+ .++.||+.
T Consensus 12 ~~~~~~v~~~l~~~~~----~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~--------~~~eVi~p 79 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQL----TQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSA--------DRNEIITT 79 (371)
T ss_dssp HHHHHHHHHHHTSSCC----SSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCT--------TSCEEEEC
T ss_pred HHHHHHHHHHHcCCCc----cCCHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCC--------CCCeeecc
Confidence 4556788888866322 12355789999999999999999999999999999986542111 24578888
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012368 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
.-+|.......+..+..+.+. ...++.. .+.+++++.+.+ ++.+|++-...|. ... +++|.++|
T Consensus 80 ~~t~~a~~~ai~~~G~~pv~v----Di~~~~~----~~~~~~~~~~~~-~t~avi~vh~~G~---~~~----~~~i~~~~ 143 (371)
T d2fnua1 80 PISFVATANMLLESGYTPVFA----GIKNDGN----IDELALEKLINE-RTKAIVSVDYAGK---SVE----VESVQKLC 143 (371)
T ss_dssp SSSCTHHHHHHHHTTCEEEEC----CBCTTSS----BCGGGSGGGCCT-TEEEEEEECGGGC---CCC----HHHHHHHH
T ss_pred cccccccceeeeccCcccccc----ccccccc----ccchhhhhhccc-hhhcccccccccc---ccc----cccccccc
Confidence 777765555445555444332 1111111 244667777765 5667766655543 333 78999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCCC-----------
Q 012368 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYGD----------- 340 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~~----------- 340 (465)
+++|+.||.|.+|+ +|. .+.-...|-.-|+.++| |.++.|- .|+++.+ +++.+.+....
T Consensus 144 ~~~~i~lIEDaaqa-~Ga---~~~~~~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~ 218 (371)
T d2fnua1 144 KKHSLSFLSDSSHA-LGS---EYQNKKVGGFALASVFSFHAIKPITTAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFE 218 (371)
T ss_dssp HHHTCEEEEECTTC-TTC---EETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSC
T ss_pred cccchhhccchhhc-cCc---eeccccCCcccccccccccccccccccc-ceEEEeechhhhhhcccccccccccccccc
Confidence 99999999999997 432 11122234444666654 8887543 4777765 56655543210
Q ss_pred -----CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee------eccceEEEEEec--
Q 012368 341 -----HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV------RGLGLIIGIEFD-- 407 (465)
Q Consensus 341 -----~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~~~g~~~~i~~~-- 407 (465)
.+..+..+.+.++.++.-|+.+ ++..++ +....+.+.+.+...+.+... ......+.+.+.
T Consensus 219 ~~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~----R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 292 (371)
T d2fnua1 219 GEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQK----REEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK 292 (371)
T ss_dssp EEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHH----HHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG
T ss_pred cccccccccccccchhhhhhhhhhhhc--cchhhh----hhhhhhhhccccccccccccccccccccccccccccccccc
Confidence 1233445666666666666533 233333 333344444445555432211 111122333332
Q ss_pred --CChHHHHHHHHHCCceEeec--------------CC----------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 408 --VSATPVVDACRDSGLLVLTA--------------GK----------GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 408 --~~~~~~~~~l~~~Gv~v~~~--------------~~----------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
....++.+.|.++||-+.+. .. .+.+.+=.....|++|++..++.|.+++++
T Consensus 293 ~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~ 370 (371)
T d2fnua1 293 FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES 370 (371)
T ss_dssp GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 12357899999999976531 01 123544223456999999999999998875
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.44 E-value=1.3e-11 Score=119.36 Aligned_cols=306 Identities=12% Similarity=0.145 Sum_probs=173.3
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 012368 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~ 199 (465)
++++.+.++..... + .-+...++++.+++.++...+++++|||.|+.+|++++. . .++++|+++.-+
T Consensus 4 ~~~~~~~l~~~~~~-~--~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~-~---------~~gdeVi~p~~t 70 (374)
T d1o69a_ 4 LKYIEEVFKSNYIA-P--LGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG-V---------KQDDIVLASSFT 70 (374)
T ss_dssp HHHHHHHHHHTTTS-C--TTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT-C---------CTTCEEEEESSS
T ss_pred HHHHHHHHhcCCcC-C--CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC-C---------CCcCEEEeCCcc
Confidence 57788888763211 1 134578899999999999999999999999999998653 1 258899998888
Q ss_pred cccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 012368 200 FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA 279 (465)
Q Consensus 200 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 279 (465)
|......+...+..+.+.. ..+.... ...+.+.++..+.. ++.+|++....+. ... +++|.++|+++
T Consensus 71 ~~a~~~~~~~~g~~pv~~D----i~~~~~~-~~~~~~~~~~~~~~-~~~aii~~~~~G~---~~d----~~~i~~~~~~~ 137 (374)
T d1o69a_ 71 FIASVAPICYLKAKPVFID----CDETYNI-DVDLLKLAIKECEK-KPKALILTHLYGN---AAK----MDEIVEICKEN 137 (374)
T ss_dssp CGGGTHHHHHTTCEEEEEC----BCTTSSB-CHHHHHHHHHHCSS-CCCEEEEECGGGC---CCC----HHHHHHHHHHT
T ss_pred hHhhHHHHhhccceeEecc----ccccccc-ccccccccchhccc-ccccccccccccc---hhh----hHHHHHHhhcc
Confidence 8666555544444333221 1111000 00022333344444 4556655554433 222 88999999999
Q ss_pred CCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCCccceeeEEe-CHHHHhhccCC--------------C
Q 012368 280 GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALV-TEKVASAINYG--------------D 340 (465)
Q Consensus 280 g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~-~~~i~~~~~~~--------------~ 340 (465)
|+.||.|.+|+ ||-. +.-...|-.-|+.+|| |.++.|- .|+++. ++++++.+... .
T Consensus 138 ~i~vIED~a~a-~g~~---~~~~~~G~~gd~~~fSf~~~K~l~tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~ 212 (374)
T d1o69a_ 138 DIVLIEDAAEA-LGSF---YKNKALGTFGEFGVYSYNGNKIITTSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLD 212 (374)
T ss_dssp TCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSS
T ss_pred Ccchhhhhhhh-hcce---ECCeecCCCCceEEEeccCcccccccc-ceeehhhhHHHHHhhcccccccccccccccccc
Confidence 99999999997 4311 1111223334777765 8886442 255555 46666554211 0
Q ss_pred CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe--c-----------
Q 012368 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--D----------- 407 (465)
Q Consensus 341 ~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~--~----------- 407 (465)
.+..+..+.+.++.+..-|+.+ +...++-++..+++.+.|.+.....+..........+..+.+ +
T Consensus 213 ~G~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 290 (374)
T d1o69a_ 213 YGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDI 290 (374)
T ss_dssp CCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEE
T ss_pred CCccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeecccccccccccccc
Confidence 1233445677677766666543 334444444555555555432111111111111111111111 1
Q ss_pred ----------CChHHHHHHHHHCCceEeecCC-----------------------CCEEEEecCCCCcHHHHHHHHHHHH
Q 012368 408 ----------VSATPVVDACRDSGLLVLTAGK-----------------------GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 408 ----------~~~~~~~~~l~~~Gv~v~~~~~-----------------------~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
.....+.+.|.++||-+++.-. ...+.+=+...+|++|++..++.|.
T Consensus 291 ~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~ 370 (374)
T d1o69a_ 291 NISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLIL 370 (374)
T ss_dssp ECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHH
Confidence 1235688999999997653210 0123332234569999999999999
Q ss_pred HHHH
Q 012368 455 KTLP 458 (465)
Q Consensus 455 ~~l~ 458 (465)
++++
T Consensus 371 ~~lk 374 (374)
T d1o69a_ 371 KSIK 374 (374)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 8763
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.40 E-value=1.6e-12 Score=125.28 Aligned_cols=308 Identities=12% Similarity=-0.001 Sum_probs=159.4
Q ss_pred CCHHHHHHHHHHHhhcccc-------cCCC--CCHHHHHHHHHHHhhcC-CC--eEEecCCHHHHHHHHHHHHHHHhhhc
Q 012368 115 GDADWIKAVVDQANVLTHV-------SNMY--YSIPQIELAKRLVACSF-AD--RVFFSNTGTEANEAAIKFARKFQRHS 182 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~-------~~~~--~~~~~~~la~~l~~~~~-~~--~v~~~~sG~eA~~~al~~a~~~t~~~ 182 (465)
-+++|++|+.+++...... +.+. .....++.++.|++.++ .+ .|+|++|++++...++.....
T Consensus 14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~----- 88 (361)
T d2c0ra1 14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL----- 88 (361)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccc-----
Confidence 4688999998876442111 0111 11336778888888887 22 688888877776555443321
Q ss_pred CCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCCCCceEee-----CCCHHHHHhhcCCCCeEEEEEcccC
Q 012368 183 NPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVE-----YGNIEATRKLIQPGKTAAVFVEPIQ 256 (465)
Q Consensus 183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~le~~l~~~~~a~vi~ep~~ 256 (465)
.+++++++...+..+....-+. ..+. .+.... ..+++.+++.+.......+..+
T Consensus 89 -----~~~~~~l~~~~g~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--- 148 (361)
T d2c0ra1 89 -----KEGQTANYVMTGSWASKALKEAKLIGD------------THVAASSEASNYMTLPKLQEIQLQDNAAYLHLT--- 148 (361)
T ss_dssp -----CTTCEEEEEECSHHHHHHHHHHHHHSC------------EEEEEECGGGTTCSCCCGGGCCCCTTEEEEEEE---
T ss_pred -----cCCCceEEEeechhhhhhhhhhhhcCc------------eeeeeccccccccchhhhhhhcccCcceEEEEe---
Confidence 1456677666544333222111 0010 011111 1255667777765454443332
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhc
Q 012368 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI 336 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~ 336 (465)
.|...+ ++++.++|+++|+++++|.|++ +| +.. ++...+..|+.+.+|.++.+-..++++..+.+...-
T Consensus 149 --tg~~~~----~~~i~~~~~~~~al~~vDavss-~g--~~~--id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~ 217 (361)
T d2c0ra1 149 --SNETIE----GAQFKAFPDTGSVPLIGDMSSD-IL--SRP--FDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESP 217 (361)
T ss_dssp --SEETTT----TEECSSCCCCTTSCEEEECTTT-TT--SSC--CCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCC
T ss_pred --ccccee----cceEEEeeccCCceEEEEeecc-cc--ccc--cccccceeEEEecccccccccCcEEEEEhHHhhhCc
Confidence 233333 4567789999999999999997 43 222 333344567778889887532223333333322211
Q ss_pred cCC-----------CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-C-----ceeeeccc
Q 012368 337 NYG-----------DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-H-----VKDVRGLG 399 (465)
Q Consensus 337 ~~~-----------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~-----~~~~~~~g 399 (465)
... ........++....++..++......+......+..+..+..+........ . ....++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~- 296 (361)
T d2c0ra1 218 KHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSD- 296 (361)
T ss_dssp TTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCS-
T ss_pred cccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccc-
Confidence 111 011112222333333332222221222222222222222222222222221 1 1112222
Q ss_pred eEEEEEec--CChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 400 LIIGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 400 ~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
....+.+. .++.++.+.|.++||.+..+.. -+.+||+....+|.||++++++.|+++.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 297 MNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 33444442 3457889999999998877632 123899999999999999999999987654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.33 E-value=8.8e-12 Score=119.79 Aligned_cols=314 Identities=9% Similarity=-0.055 Sum_probs=163.3
Q ss_pred CCHHHHHHHHHHHhhcccc-------cCCC--CCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhc
Q 012368 115 GDADWIKAVVDQANVLTHV-------SNMY--YSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHS 182 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~-------~~~~--~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~ 182 (465)
-|++|++|+.+++...... +.+. ......+.++.|++.++ ...|+|++|+++++..+......
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~----- 88 (360)
T d1w23a_ 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLL----- 88 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhc-----
Confidence 4799999999877432110 0110 11236678888888887 23688888888777765554432
Q ss_pred CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
.+++.+++...+.++................. . .. .....+++.++...... ..+.++.+ .|.+
T Consensus 89 -----~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~--~-~~---~~~~~~~~~~~~~~~~~--~~~~~~~~---tg~~ 152 (360)
T d1w23a_ 89 -----TKGTIGNYVLTGSWSEKALKEAKLLGETHIAA--S-TK---ANSYQSIPDFSEFQLNE--NDAYLHIT---SNNT 152 (360)
T ss_dssp -----CTTCEEEEEECSHHHHHHHHHHHTTSEEEEEE--E-CG---GGTSCSCCCGGGCCCCT--TEEEEEEE---SEET
T ss_pred -----ccCcccceeeccchhhhhHHHHHHhhhcceee--c-cc---cccccchhhhhhccccc--ccceeEec---CCcc
Confidence 14677777766665544322211100000000 0 00 00011234444444432 23444433 3445
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCC--
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD-- 340 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~-- 340 (465)
.+ +++|.++|+++|+++|+|-+++ +| +...-.+ .+..|+.+++|.++.+-..|.++.++...+......
T Consensus 153 ~~----~~~i~~~~~~~g~l~ivDavqs-~g--~~~id~~--~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (360)
T d1w23a_ 153 IY----GTQYQNFPEINHAPLIADMSSD-IL--SRPLKVN--QFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTM 223 (360)
T ss_dssp TT----TEECSSCCCCCSSCEEEECTTT-TT--SSCCCGG--GCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGG
T ss_pred cc----ceeeeeccccceeeEEeecccc-cc--ccccccc--cccceEEeeccccccCCcceeeEechhhhcccccCCcc
Confidence 55 6688899999999999999997 43 2222233 345688899988875444555555554433222110
Q ss_pred ---------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC------CceeeeccceEEEEE
Q 012368 341 ---------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP------HVKDVRGLGLIIGIE 405 (465)
Q Consensus 341 ---------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------~~~~~~~~g~~~~i~ 405 (465)
........+....+....+....+........+........+........ .....++.+ .+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~-vvsf~ 302 (360)
T d1w23a_ 224 LQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLM-NVTFN 302 (360)
T ss_dssp GCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSS-EEEEE
T ss_pred hhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhccee-EEEEE
Confidence 11111122222222222222221222222222222222222222222221 111223333 44555
Q ss_pred ec--CChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 406 FD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 406 ~~--~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+. ....++...|.++||.+..+.. -+.+|+++-..+|.||++.+++.++++.++
T Consensus 303 i~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 303 LRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 52 2346788889999999876532 124899987778999999999999887764
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=6.4e-11 Score=113.31 Aligned_cols=313 Identities=10% Similarity=-0.083 Sum_probs=160.8
Q ss_pred CCHHHHHHHHHHHhhcccc-------cCCCC--CHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhc
Q 012368 115 GDADWIKAVVDQANVLTHV-------SNMYY--SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHS 182 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~-------~~~~~--~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~ 182 (465)
-+|+|++|+.+.+...... +.+.+ .....+.++.|++.++ ...|+|++|++++...++.....
T Consensus 12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~----- 86 (360)
T d1bjna_ 12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNIL----- 86 (360)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhccc-----
Confidence 4789999999987543111 01110 1225678888888887 33688888888777665543331
Q ss_pred CCCCCCCCceEEEEcCCcccCcccccccc-CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-CeEEEEEcccCCCCC
Q 012368 183 NPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-KTAAVFVEPIQGEGG 260 (465)
Q Consensus 183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~a~vi~ep~~~~~G 260 (465)
.+++.+++....+.+.....+... +..... .. ...-...+.+.+++.+... +..+|.. ..+.+|
T Consensus 87 -----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~v~v~~--~~~~t~ 152 (360)
T d1bjna_ 87 -----GDKTTADYVDAGYWAASAIKEAKKYCTPNVF---DA----KVTVDGLRAVKPMREWQLSDNAAYMHY--CPNETI 152 (360)
T ss_dssp -----TTCCEEEEEESSHHHHHHHHHHTTTSEEEEE---EC----EEEETTEEEECCGGGCCCCSSCSCEEE--CSEETT
T ss_pred -----ccccccceecccchhhhhHHHHhhcCcccee---ec----cccCCCcchhhhhhhhccCCceeEEEe--cccccc
Confidence 146666666555444322211110 000000 00 0000001334445555532 2223332 223334
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCC
Q 012368 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~ 340 (465)
...+. ..+ .++.+++++++|-+++ ++.. -.+..++..++.+.+|.++++...+.++..+...+......
T Consensus 153 ~~~~~----~~i--~~~~~~~~v~vDa~~~-~~~~----~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (360)
T d1bjna_ 153 DGIAI----DET--PDFGADVVVAADFSST-ILSR----PIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACP 221 (360)
T ss_dssp TTEEC----CCC--CCCCTTCCEEEECTTT-TTSS----CCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSC
T ss_pred cCccc----cce--ecccccceeeeeeecc-ccce----eeeeccceeEEEEcccccccCCCceeEeeehhhhhccccCC
Confidence 44442 222 4677899999998775 3211 24445566677788899987655566665554433222110
Q ss_pred -----------CcCCCCC-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc-----eeeeccceEEE
Q 012368 341 -----------HGSTFAG-SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV-----KDVRGLGLIIG 403 (465)
Q Consensus 341 -----------~~~t~~~-~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~g~~~~ 403 (465)
....... .+....+....+... .....+...+........+.......... ...++. ..+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~-~v~~ 299 (360)
T d1bjna_ 222 SILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLK-ANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSR-MNVP 299 (360)
T ss_dssp GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCS-SEEE
T ss_pred cchhhHHHHhhhhhccccccchHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccc-eEEE
Confidence 1111122 222222323333322 22222333333332223333332222211 112222 3455
Q ss_pred EEec--CChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012368 404 IEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 404 i~~~--~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.++ .....+...|.++||.+..+.. -+.+|++....+|+|||+++++.|+++.++
T Consensus 300 f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~ 358 (360)
T d1bjna_ 300 FQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 358 (360)
T ss_dssp EEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEcCCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 6663 4567789999999998876532 123899998899999999999999987653
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.3e-10 Score=109.00 Aligned_cols=316 Identities=16% Similarity=0.117 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHhh-ccccc----CCCCCHH---HHHHHH-HHHhhcCCCeEE-ecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQANV-LTHVS----NMYYSIP---QIELAK-RLVACSFADRVF-FSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~----~~~~~~~---~~~la~-~l~~~~~~~~v~-~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.+|.|.+++...+.. +.-++ .+...+. .+.|+. +..+.++.+.+- -..||+.||..++.+..
T Consensus 38 ~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All-------- 109 (416)
T d1dfoa_ 38 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL-------- 109 (416)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhc--------
Confidence 568888887665542 21111 1122333 334443 334556755443 35889999999888665
Q ss_pred CCCCCCceEEEEcCCcccCccccccccCCCC-cC-CCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEH-YR-SPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
+|+|+|+..+...-|+.......+.... +. .++ +...... -|.+++++..+..++++|++....-. -.
T Consensus 110 ---~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y-~~d~~~~----IDyd~l~~~a~~~kPklIi~G~S~y~--r~ 179 (416)
T d1dfoa_ 110 ---EPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPY-GIDATGH----IDYADLEKQAKEHKPKMIIGGFSAYS--GV 179 (416)
T ss_dssp ---CTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEE-CBCSSSS----BCHHHHHHHHHHHCCSEEEEECSSCC--SC
T ss_pred ---CCCCeeeeccccccccccccccccccCceEEEEec-ccCCccC----ccHHHHHHHHHHhccceEEecccccc--cc
Confidence 2799999998877666544322110000 00 000 0000001 18899988887556778887653221 12
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeC---HHHHhhc
Q 012368 263 SATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT---EKVASAI 336 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~---~~i~~~~ 336 (465)
.+ +++++++|++.|++|++|-+|. |+--.|. + ..-+.. .|++|.+ |+|.| -|.|.++.+ +++.+.+
T Consensus 180 ~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~-~-~sP~~~-aDvvt~tThKtlrG-PrggiI~~~~~~~~~~~~i 251 (416)
T d1dfoa_ 180 VD----WAKMREIADSIGAYLFVDMAHVAGLVAAGV-Y-PNPVPH-AHVVTTTTHKTLAG-PRGGLILAKGGSEELYKKL 251 (416)
T ss_dssp CC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-S-CCCTTT-SSEEEEESSSTTCC-CSCEEEEESSCCHHHHHHH
T ss_pred cC----HHHHHHHHHhcCceEEcchhhhhcceeccc-c-CCcccc-cceeeeehhhcccC-CCceEEEeccchHhHHHHH
Confidence 22 8899999999999999999975 3311111 1 111222 4888655 88875 366788775 5665555
Q ss_pred cCCCCcCCCCCh-HHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CC
Q 012368 337 NYGDHGSTFAGS-PLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VS 409 (465)
Q Consensus 337 ~~~~~~~t~~~~-~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~ 409 (465)
......+..+++ .-..+|...++....+ .++.+++.++.+.|.+.|.+. .+.++..- ....++.+++. ..
T Consensus 252 ~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~--G~~iv~gg-TdnHlvlvdl~~~~~~ 328 (416)
T d1dfoa_ 252 NSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER--GYKVVSGG-TDNHLFLVDLVDKNLT 328 (416)
T ss_dssp HHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGGGS-CSSSEEEEECGGGTCC
T ss_pred HhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC--CcccccCC-CCCceeEEEecccCCC
Confidence 422222222222 2223333344554333 356677777888887777664 23222111 12346667772 34
Q ss_pred hHHHHHHHHHCCceEee----cC-----CCCEEEEecC----CCCcHHHHHHHHHHHHHHHHH
Q 012368 410 ATPVVDACRDSGLLVLT----AG-----KGNVVRLVPP----LIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~----~~-----~~~~lRi~~~----~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..++.+.|.+.||.+.. +. ...-+||..+ ....++|++++.+.|.++++.
T Consensus 329 G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 329 GKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 56677777788998752 21 1346999765 346789999999999988864
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.24 E-value=3.7e-10 Score=107.01 Aligned_cols=318 Identities=15% Similarity=0.115 Sum_probs=183.2
Q ss_pred CCHHHHHHHHHHHhh-ccccc---C-CCCCHH---HHHHH-HHHHhhcCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 115 GDADWIKAVVDQANV-LTHVS---N-MYYSIP---QIELA-KRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~---~-~~~~~~---~~~la-~~l~~~~~~~~v-~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.+|.|.+++...+.. +.-++ . +...+. .+.++ ++..+.++.+.+ +=..||+.||..++.++.
T Consensus 35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all-------- 106 (405)
T d1kl1a_ 35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVL-------- 106 (405)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhc--------
Confidence 568888887766632 22111 1 112333 23333 344456675543 335689999998888665
Q ss_pred CCCCCCceEEEEcCCcccCccccccccCCC-CcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCccc
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYS 263 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~ 263 (465)
+|+|+|+..+...-|+........... .+.....+..++... -|.++++++.+..++++||+-...-. .+
T Consensus 107 ---~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~---ID~d~l~~~a~~~kPklIi~G~S~y~---r~ 177 (405)
T d1kl1a_ 107 ---EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHV---IDYDDVREKARLHRPKLIVAAASAYP---RI 177 (405)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCS---BCHHHHHHHHHHHCCSEEEECCSSCC---SC
T ss_pred ---CCCCEEEEeecccccccccCccccccceEEEEEEeccchhccc---ccHHHHHHHHHhhCcceEEecccccc---cc
Confidence 389999999887766654322111000 000000011111111 17899998887556778888664322 12
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCC
Q 012368 264 ATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD 340 (465)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~ 340 (465)
.+ +++++++|++.|++|++|-+|. |+--.|. + ..-++ ..|++|.+ |+|.| -|.|.++.++++.+.+....
T Consensus 178 ~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~-~-~~P~~-~aDvvt~tThKtlrG-Prgg~I~~~~~~~~~i~~av 250 (405)
T d1kl1a_ 178 ID---FAKFREIADEVGAYLMVDMAHIAGLVAAGL-H-PNPVP-YAHFVTTTTHKTLRG-PRGGMILCQEQFAKQIDKAI 250 (405)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-S-CCSTT-TCSEEEEESSSTTCC-CSCEEEEECHHHHHHHHHHH
T ss_pred cC---hHHHHHHHhhhCCEEecchhhHhhhhhhhh-c-CChhh-hhhheeccccccccC-CCCceEEecchhHHHHHhhh
Confidence 22 8899999999999999999864 3311121 1 11122 25888776 88875 37788899988887775432
Q ss_pred CcCCCCChHHH-HHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHHH
Q 012368 341 HGSTFAGSPLV-CNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPV 413 (465)
Q Consensus 341 ~~~t~~~~~~~-~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~ 413 (465)
+.+..+++-+. .+|...++..... .++.+++.++.+.|.+.|.+. .+.++..- ....++++++. ......
T Consensus 251 fPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~--G~~vv~gg-Td~H~vlvdl~~~~~~g~~a 327 (405)
T d1kl1a_ 251 FPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTLVSGG-TDNHLLLVDLRPQQLTGKTA 327 (405)
T ss_dssp TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGGGS-CSSSEEEEECGGGTCCHHHH
T ss_pred CcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC--CceeecCC-CccceeeccccccCCcHHHH
Confidence 22333332222 2222233333222 356677777888887777653 22222111 13446777772 344555
Q ss_pred HHHHHHCCceEee----cCC-----CCEEEEecC----CCCcHHHHHHHHHHHHHHHHH
Q 012368 414 VDACRDSGLLVLT----AGK-----GNVVRLVPP----LIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 414 ~~~l~~~Gv~v~~----~~~-----~~~lRi~~~----~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+.|.+.||.+.. ... ..-+||-.+ ....++|+.++.+.|.++++.
T Consensus 328 e~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 328 EKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp HHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 5667778998762 211 246999765 346789999999999988854
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=7e-09 Score=100.53 Aligned_cols=283 Identities=16% Similarity=0.101 Sum_probs=163.4
Q ss_pred HHHHHHHHHhhcCCCeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012368 142 QIELAKRLVACSFADRVFFS-NTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 142 ~~~la~~l~~~~~~~~v~~~-~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
.-++.+.|++..|.+.+-+. ..|+.|...++.+++.+++ ++++++....+ ..+.........
T Consensus 110 l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~---------~~~~~v~~~~~-p~~~~v~~t~a~------- 172 (437)
T d1wyua1 110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETG---------RMGVLVSQGVH-PEYRAVLRAYLE------- 172 (437)
T ss_dssp HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHT---------CCEEEEETTSC-HHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhc---------ccccccccccC-hHHhhhhhhhcc-------
Confidence 45788889999997766443 5688888888988988874 67788766554 333332221100
Q ss_pred CCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc
Q 012368 221 EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300 (465)
Q Consensus 221 ~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~ 300 (465)
+..-.+..+|.++.......+ .+++++|++... ++-|.+.. ++++.+++++.|.++|.|--...++-. -.
T Consensus 173 -~~g~~vv~v~~~~~~~~~~~~-~~~~Aavmi~~P-nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al~~l---~~ 242 (437)
T d1wyua1 173 -AVGAKLLTLPLEGGRTPLPEV-GEEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSLGVL---KP 242 (437)
T ss_dssp -HTTCEEEEECCBTTBCCCCCC-CTTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGTB---CC
T ss_pred -cceeeEEeeecccccchhhhh-ccceeEEEEccc-cccccccc----hHHHHHHhhhccceEEeeechhhhhcc---cc
Confidence 111223334433221111113 346777766544 44466532 789999999999988877432222111 01
Q ss_pred ccccCCcccEEEe-cccCC-----CccceeeEEeCHHHHhhccCCC-----------------------------CcCCC
Q 012368 301 HEHYGIFPDIMTL-AKPLA-----GGLPIGAALVTEKVASAINYGD-----------------------------HGSTF 345 (465)
Q Consensus 301 ~~~~~~~pdi~t~-sK~lg-----~G~~iG~v~~~~~i~~~~~~~~-----------------------------~~~t~ 345 (465)
-..+| .|+++. +|.|| ||-..|++.+++++...+-... .++..
T Consensus 243 Pg~~G--aDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnic 320 (437)
T d1wyua1 243 PGAYG--ADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNIT 320 (437)
T ss_dssp HHHHT--CSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCC
T ss_pred ccccc--cceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchh
Confidence 11223 477643 46554 2456788888988876653211 01122
Q ss_pred CChHHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE--EEEEecCChHHHHHHHHHC
Q 012368 346 AGSPLVCNAAIAVLDKISNPAF---LASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI--IGIEFDVSATPVVDACRDS 420 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~--~~i~~~~~~~~~~~~l~~~ 420 (465)
+++.+.+..+...+..+..+++ .++...+..++.++| .+.+.+..+.....| +.++++.++.++.++|+++
T Consensus 321 t~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L----~~~~g~~~~~~~~~f~ef~v~~~~~~~~i~k~L~d~ 396 (437)
T d1wyua1 321 TNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALL----LEVPGVRPFTPKPFFNEFALALPKDPEAVRRALAER 396 (437)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTSTTCEECSCSSBCSEEEEECSSCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHh----hhcCCeeccCCCCeeeEEEEECCCCHHHHHHHHHhC
Confidence 3344444444445554444433 334444455555554 344433322222222 2344467788999999999
Q ss_pred CceEeec----CCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012368 421 GLLVLTA----GKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 421 Gv~v~~~----~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
|+..... -..+.+.+++.-..|++|||+++++|++++
T Consensus 397 G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 397 GFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp TCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 9974321 123678999988899999999999998764
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.02 E-value=9.4e-09 Score=98.89 Aligned_cols=313 Identities=13% Similarity=0.110 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHhh-ccccc---C-----CCCCHHHHHHH-HHHHhhcCCCe-----EEecCCHHHHHHHHHHHHHHHh
Q 012368 115 GDADWIKAVVDQANV-LTHVS---N-----MYYSIPQIELA-KRLVACSFADR-----VFFSNTGTEANEAAIKFARKFQ 179 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~---~-----~~~~~~~~~la-~~l~~~~~~~~-----v~~~~sG~eA~~~al~~a~~~t 179 (465)
.+|.|++|+.-.+.. +.-++ . -+.+. .+.++ ++..+.++.+. =+=..||+.||..++..+.
T Consensus 39 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~-iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all--- 114 (463)
T d2a7va1 39 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDE-IELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--- 114 (463)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTH-HHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC---
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHH-HHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHc---
Confidence 567788777665532 21110 0 11222 33343 44455666332 2445789999998888665
Q ss_pred hhcCCCCCCCCceEEEEcCCcccCcccccc-----ccCCCC-cCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012368 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALA-----LTSKEH-YRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
+|+|+|+..+...-|+...... .+.... +........+....+ |.++++++.+..++++||+-
T Consensus 115 --------~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~I---Dyd~~~~~a~~~kPklIi~G 183 (463)
T d2a7va1 115 --------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI---DYNQLALTARLFRPRLIIAG 183 (463)
T ss_dssp --------CSCEECCC-------------------------------CCBCTTTCSB---CHHHHHHHHHHHCCSEEEEC
T ss_pred --------CCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcC---cHHHHHHHHhhcCCceEEec
Confidence 2799999988765555432211 110000 000000111111111 78888888875567788886
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCH
Q 012368 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE 330 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~ 330 (465)
...-. .+.+ +++++++|++.|++|++|-.|. |+--.|. + ..-+.. .|++|.+ |+|.| -|.|.++.++
T Consensus 184 ~S~y~---r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~-~-~sP~~~-aDvvt~tTHKTlrG-PrgGiIl~~~ 253 (463)
T d2a7va1 184 TSAYA---RLID---YARMREVCDEVKAHLLADMAHISGLVAAKV-I-PSPFKH-ADIVTTTTHKTLRG-ARSGLIFYRK 253 (463)
T ss_dssp CSSCC---SCCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTS-S-CCGGGT-CSEEEEESSGGGCS-CSCEEEEEEC
T ss_pred ccccc---cccC---HHHHHHHhhcccceEEechhhhhHHhhhhh-h-cChhhh-hhhhhchhhhhhcC-CCceEEEEcc
Confidence 64322 1222 8899999999999999999865 3311121 1 111222 4888776 88875 3667777765
Q ss_pred ---------------HHHhhc----cCCCCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHc
Q 012368 331 ---------------KVASAI----NYGDHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 331 ---------------~i~~~~----~~~~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
++.+.+ -|+.+++.. .-..+|...++....+ .++.+++.++.+.|.+.|.+. .
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph---~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~--G 328 (463)
T d2a7va1 254 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPH---NHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--G 328 (463)
T ss_dssp SEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCC---HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred cccccccccCccchhHHHHHhhhhcCcccchhhh---hhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC--C
Confidence 223333 233333322 1122222233333223 356677777777777777654 3
Q ss_pred CCCceeeeccceEEEEEec---CChHHHHHHHHHCCceEeec----C----CCCEEEEecC----CCCcHHHHHHHHHHH
Q 012368 389 NPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTA----G----KGNVVRLVPP----LIISEQELDQAVEIL 453 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~----~----~~~~lRi~~~----~~~t~e~i~~~l~~l 453 (465)
+.++..- ....++.+++. .......+.|.+.||.+... . ...-+||-.+ ....++|+.++.+.|
T Consensus 329 ~~vv~gg-TdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I 407 (463)
T d2a7va1 329 YSLVSGG-TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI 407 (463)
T ss_dssp CEEGGGS-CSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHH
T ss_pred CeeecCC-CCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHH
Confidence 3222111 12335667762 34566777788889987532 1 1245899765 345779999999998
Q ss_pred HHHHH
Q 012368 454 CKTLP 458 (465)
Q Consensus 454 ~~~l~ 458 (465)
.+++.
T Consensus 408 ~~~l~ 412 (463)
T d2a7va1 408 DEGVN 412 (463)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.98 E-value=1.9e-08 Score=97.07 Aligned_cols=317 Identities=15% Similarity=0.124 Sum_probs=174.3
Q ss_pred CCHHHHHHHHHHHhh-cccc---cC-CCCCHHHHH---HH-HHHHhhcCCC----e-EEecCCHHHHHHHHHHHHHHHhh
Q 012368 115 GDADWIKAVVDQANV-LTHV---SN-MYYSIPQIE---LA-KRLVACSFAD----R-VFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~---~~-~~~~~~~~~---la-~~l~~~~~~~----~-v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.+|.|++++.-.+.. +.-+ .. +...+...+ ++ ++..+.++.+ . -+=..||+.||..++.++.
T Consensus 43 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all---- 118 (470)
T d1rv3a_ 43 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV---- 118 (470)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT----
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc----
Confidence 568888887765542 2111 01 113333333 33 3445566643 2 2345789999999888665
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccccccCCC------CcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012368 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE------HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
.|+|+|+..+..--|+........... .+.....+..++...+ |.+++++..+..++++||+-.
T Consensus 119 -------~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~I---Dyd~l~~~a~~~kPklIi~G~ 188 (470)
T d1rv3a_ 119 -------EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI---DYDRLEENARLFHPKLIIAGT 188 (470)
T ss_dssp -------CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSB---CHHHHHHHHHHHCCSEEEECC
T ss_pred -------CCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcc---cHHHHHHHHHhhCcceEeech
Confidence 279999999866555543321111000 0000000111111111 788888888755677888866
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHH
Q 012368 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK 331 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~ 331 (465)
..-. ...+ +++++++|++.|++|++|-+|. |+--.|. + ..-+. ..|++|.+ |+|.| -|.|.++.+++
T Consensus 189 S~y~---r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~-~-~sPl~-~aDvvt~tTHKtlrG-PrgGiI~~~~~ 258 (470)
T d1rv3a_ 189 SCYS---RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV-V-PSPFE-HCHVVTTTTHKTLRG-CRAGMIFYRRG 258 (470)
T ss_dssp SSCC---SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-S-CCGGG-TCSEEEEESSGGGCC-CSCEEEEEECS
T ss_pred hhcc---ccCC---HHHHHHHHhccCCeEEecchhhhhhccccc-c-CChhh-eeeeeeeehhhhccC-CcceEEEEccc
Confidence 4322 1222 8899999999999999999864 3311121 1 11112 24888766 88865 36677777643
Q ss_pred ---------------HHhhccCCCCcCCCCChHHHH-HHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012368 332 ---------------VASAINYGDHGSTFAGSPLVC-NAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 332 ---------------i~~~~~~~~~~~t~~~~~~~~-~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
+.+.+....+.+..+++-... +|...++.....+ ++.+++.++.+.|.+.|.+. .+.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~--G~~v~ 336 (470)
T d1rv3a_ 259 VRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL--GYKIV 336 (470)
T ss_dssp BCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEG
T ss_pred cccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC--Cceec
Confidence 433343211222222222222 3322344443333 45566666777776666553 23222
Q ss_pred eeeeccceEEEEEec---CChHHHHHHHHHCCceEee----cC----CCCEEEEecC----CCCcHHHHHHHHHHHHHHH
Q 012368 393 KDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLT----AG----KGNVVRLVPP----LIISEQELDQAVEILCKTL 457 (465)
Q Consensus 393 ~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~----~~----~~~~lRi~~~----~~~t~e~i~~~l~~l~~~l 457 (465)
..- ....++.+++. ....++.+.|.+.||.+.. +. ...-+||-.+ ....++|+.++.+.|.+++
T Consensus 337 ~gg-TdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l 415 (470)
T d1rv3a_ 337 TGG-SDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGI 415 (470)
T ss_dssp GGS-CSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCC-CCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 111 12345666662 3556667777788998752 21 1245999664 4467899999999998887
Q ss_pred H
Q 012368 458 P 458 (465)
Q Consensus 458 ~ 458 (465)
+
T Consensus 416 ~ 416 (470)
T d1rv3a_ 416 E 416 (470)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.95 E-value=5.5e-07 Score=88.02 Aligned_cols=319 Identities=17% Similarity=0.161 Sum_probs=179.9
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCCC-HH-------HHHHHHHHHhhcCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCC
Q 012368 114 HGDADWIKAVVDQANVLTHVSNMYYS-IP-------QIELAKRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~~~~~~-~~-------~~~la~~l~~~~~~~~v~~-~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
|-+|.|.+.+.+. ++. ++.|.. +. .-++-..|++++|.|-+-. ...|..|...|+.+++.+++.++.
T Consensus 76 hy~P~v~~~~~~~---~Ta-YTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~ 151 (471)
T d1wyub1 76 KYNPKLHEEAARL---FAD-LHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGE 151 (471)
T ss_dssp CCCCHHHHHHHHT---TSS-CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCcchhhhHHHH---Hhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhccc
Confidence 5568888887653 222 234442 32 3466778888999875533 356888888888888877654332
Q ss_pred CCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccC
Q 012368 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~ 264 (465)
. ....++...+.+|................. +..... ..|.+.++..... +++++++...+..|....
T Consensus 152 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~-~~a~v~v~~p~~~g~~e~- 219 (471)
T d1wyub1 152 G---RTRRVVLVPDSAHGSNPATASMAGYQVREI---PSGPEG----EVDLEALKRELGP-HVAALMLTNPNTLGLFER- 219 (471)
T ss_dssp T---TTCCEEEEETTSCTHHHHHHHHTTCEEEEE---CBCTTS----SBCHHHHHHHCST-TEEEEEECSSCTTSCCCT-
T ss_pred c---cccccccCCcccccceeeeeecccceeecc---cccccc----cccchhhhhhhhc-cccceeeccCCCcccccc-
Confidence 2 234456666666654433222211111000 000000 1267788777754 577777766555554332
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCC----C-ccceeeEEeCHHHHhhcc
Q 012368 265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLA----G-GLPIGAALVTEKVASAIN 337 (465)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg----~-G~~iG~v~~~~~i~~~~~ 337 (465)
..+++.+++++++.++++|-+--.. -.+.. ....+ .-|+++. ++.+| + |--+|++.++++++..+-
T Consensus 220 ---~~~~~~~~~h~~g~~~~~~~~~~~~-~~~l~-~p~~~--g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~P 292 (471)
T d1wyub1 220 ---RILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLP 292 (471)
T ss_dssp ---THHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHH--TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCC
T ss_pred ---hhhhhHHHHHhccccccccccchhh-hhhcc-ccCcc--cccccccccccccccccccccccccceeehhhhhccCC
Confidence 2778899999999988887542211 01100 01111 1355543 35553 3 455789999998876653
Q ss_pred CC----------------CC---cCCCCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012368 338 YG----------------DH---GSTFAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 338 ~~----------------~~---~~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
.. +| ....+++.+...++...+..+..+ ++.+....+..++.++|+.. .+.. .
T Consensus 293 GRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~--G~~~---~ 367 (471)
T d1wyub1 293 VPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--GYRV---P 367 (471)
T ss_dssp SCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCBC---S
T ss_pred CceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhc--Ccee---c
Confidence 11 01 111233444444454455555443 44556666777887777441 2221 1
Q ss_pred eccceE--EEEEec--CChHHHHHHHHHCCceEeec----CCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012368 396 RGLGLI--IGIEFD--VSATPVVDACRDSGLLVLTA----GKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 396 ~~~g~~--~~i~~~--~~~~~~~~~l~~~Gv~v~~~----~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.....| +.+.++ ....++.++|++.|++-... ...+.+.|++.=.+|++|||+++++|++++++.
T Consensus 368 ~~~~ff~EFvv~~~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 368 YDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp SCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred cCcceeeEEeecCCCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 111222 223332 35677999999999864321 113568888888899999999999999998764
|