Citrus Sinensis ID: 012376

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----

MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFGGSPPPDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLVTD

cccccccccEEEHHHHHHccccEEEEEEEEEEccccEEEccccEEEEEEEEEcccccccEEEEEEcccccccccccccccEEEEcEEEEEEEccEEEEEEEccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEEEEEEccccEEEEEEEEcccccccccccccccccccccccccccccccHHHHcccccEEEEEEEEEccccHHHHccccccccEEEEEccEEEEEccEEEEEEEccccEEEcccccHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccHHHHHHccccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEccccEEEEEEEccHHHHcccccccHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEcccccEEEEEEEEEEEEcc

ccccccccEEEEHHHHHHccccEEEEEEEEEEcccccccccccEEEEEEEEEcccccccEEEEEEcccHHHcccEcccccEEEEEEEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEHHHcccccccEEEEEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccHHHHcccccccEEEEEEEccccHHHHHHHcccccEEEEEEEEEEEcccEEEEEEcccccEEEcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccEHHHHHcccccccEEEEEEEEEEEccccHHHHccccccEEEEEEEEEEccccEEEEEEEccHHHHHccccccHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccEEEEEEccEEccc

mssqrnqggivRIKELAMHVKHKVNLLGVVLefsiprksqgtdYVCVLKIVddsqqspeLLVNIFTSsidqlprvlsprdliLLKNVMIKKHQAELSAVfykdsssfalfdgnsgsnllpyqsspqrfeiTEAEERRINVLRQWCVgfefssgsndyllslkdisehrYFDLVCKVFHVSYDDSKGLWMLFVwdgtdvpplsipgkledeehnplplhiesspldletlrnffpvgtVLRVSTDRSYENFGRYFTATGKWVRIRNMscqvssgmwhgllqssskirlfsdndnVVWDYMRRFRERisgghghmpiwtdpssqfltevDWVNVASVTLMKIATQLQGNVRCCCIVRVvsihpfqaehysspngsseytmkltledpTARIHALLCGKEWvkffggspppdvlTKKIKMLlgmpehedgnddmvrnppwiKCFLHlkesdggrnrvYYIRWTKLVTD

mssqrnqggivrikelamhVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFtssidqlprvLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVlrvstdrsyenfgryftatgkwvrIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHpfqaehysspngssEYTMKLTLEDPTARIHALLCGKEWVKFFGGSPPPDVLTKKIKMLLGMPEhedgnddmvrNPPWIKCFlhlkesdggrnrvyYIRWTKLVTD

MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNvrcccivrvvSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFGGSPPPDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLVTD

********GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDG*****************ITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSI*******************PLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHY********YTMKLTLEDPTARIHALLCGKEWVKFFGGSPPPDVLTKKIKMLLG**********MVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLV**

**********VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGS***************EAEERRINVLRQWC*****************DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKL*******LPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVW*****************************EVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFGGSPPPDVLTKKIKMLLG**************PPWIKCFLHLKESDGGRNRVYYIRWTKLVTD

********GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFGGSPPPDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLVTD

*****NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFGGSPPPDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLVT*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		465	2.2.26 [Sep-21-2011]
Q56Y52		467	Protection of telomeres p	yes	no	0.961	0.957	0.329	3e-60
Q6NKX5		454	Protection of telomeres p	no	no	0.903	0.925	0.340	4e-52
P62597		778	Protection of telomeres p	yes	no	0.397	0.237	0.291	3e-15
A9JTY4		144	Protection of telomeres p	no	no	0.240	0.777	0.315	9e-14
Q95K48		634	Protection of telomeres p	N/A	no	0.356	0.261	0.314	1e-13
Q9NUX5		634	Protection of telomeres p	yes	no	0.356	0.261	0.314	1e-13
Q91WC1		640	Protection of telomeres p	no	no	0.350	0.254	0.302	1e-11
P29550		493	Telomere-binding protein	N/A	no	0.359	0.338	0.228	0.0007

>sp\|Q56Y52\|POT1A_ARATH Protection of telomeres protein 1a OS=Arabidopsis thaliana GN=POT1A PE=1 SV=1	Back alignment and function desciption

 Score =  233 bits (593), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 253/482 (52%), Gaps = 35/482 (7%)

Query: 1   MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPEL 60
           M+ +R    +++IK+    +  +V+L+G+VLE   P++ +  D++C L+I+DD+  SP L
Sbjct: 1   MAKKRESPKLIKIKDAIKLINQQVSLIGIVLEQREPKQCRNNDWICTLRIIDDTYPSPGL 60

Query: 61  LVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA--ELSAVFYKDSSSFALFDGNSGSNL 118
            VN+F+ +++QLP++ +  D+IL   + ++   +   ++A   +  SSFALF+G    + 
Sbjct: 61  TVNVFSKTLEQLPQIKNHDDMILFTRIKMQTFDSGERVNAACSRWVSSFALFEG---VDF 117

Query: 119 LPYQSSPQRFEITEAEERRINVLRQWCVG----------FEFSSGSNDYLLS-LKDISEH 167
           + YQ S    E     +  ++ LR+   G            + +     + S L++I   
Sbjct: 118 VCYQCSTNFHEEEALYKSAMDDLRKVFAGCSQVIKAMQSISYRTKPCSEVFSFLREIKIG 177

Query: 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKL--EDEEHNPLPLHIESSPLD 225
           + FDLVC++ H   D S     +FVWDGTD PP SI  K   ED+  + L +H   + L 
Sbjct: 178 KRFDLVCRILHADEDTS----AVFVWDGTDAPPASILAKRSEEDKAFSSLSVH---TLLS 230

Query: 226 LETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285
            + L +F  VGT+LRV    S   F  Y    G WV++ ++ C+V  G W   + SS+K+
Sbjct: 231 RDVLLSFPTVGTILRVHL--SSHLF--YRVKPGDWVKLYHLLCEVDRGSWVIKVTSSTKV 286

Query: 286 RLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQ 345
              + +D +V   MR + +R+S   GH+  W  PS   LTE D      VTLM I T  +
Sbjct: 287 HHLAQDDRLVEKIMRIYDKRLSSKLGHISFWCFPSPPGLTETDDNCAPFVTLMDIITFPK 346

Query: 346 GNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFG-G 404
              +  CIVRVV+ +P+Q E + S      + + LTLED TA + A LC K+   F+G G
Sbjct: 347 VTCKYRCIVRVVAAYPWQVEDFCSDENRRHHQVLLTLEDSTATLEAFLCNKDAEYFWGLG 406

Query: 405 SPPPDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFL---HLKESDGGRNRVYYIRWTK 461
               + L KK   LLG+   E  N    RNPPWI+C +   +  ++D    R+Y I  T+
Sbjct: 407 FQDTETLRKKRNWLLGI--RESSNFVAPRNPPWIECCILSYYTNKADPWNTRLYRIFGTR 464

Query: 462 LV 463
           L+
Sbjct: 465 LL 466

Component of the telomerase ribonucleoprotein (RNP) complex that is essential for positive telomere length regulation. Binds specifically the telomerase RNA template component TER1. Does not bind single-stranded telomeric DNA.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6NKX5\|POT1B_ARATH Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B PE=1 SV=1	Back alignment and function description

>sp\|P62597\|POTE1_CHICK Protection of telomeres protein 1 OS=Gallus gallus GN=POT1 PE=1 SV=1	Back alignment and function description

>sp\|A9JTY4\|POT1C_ARATH Protection of telomeres protein 1c OS=Arabidopsis thaliana GN=POT1C PE=2 SV=2	Back alignment and function description

>sp\|Q95K48\|POTE1_MACFA Protection of telomeres protein 1 OS=Macaca fascicularis GN=POT1 PE=2 SV=1	Back alignment and function description

>sp\|Q9NUX5\|POTE1_HUMAN Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1	Back alignment and function description

>sp\|Q91WC1\|POTE1_MOUSE Protection of telomeres protein 1 OS=Mus musculus GN=Pot1 PE=2 SV=1	Back alignment and function description

>sp\|P29550\|TEBA_STYMY Telomere-binding protein subunit alpha OS=Stylonychia mytilis GN=STY56V PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		465
255556592		460	conserved hypothetical protein [Ricinus	0.903	0.913	0.490	1e-104
297734334		491	unnamed protein product [Vitis vinifera]	0.961	0.910	0.409	2e-92
225456171		487	PREDICTED: uncharacterized protein LOC10	0.956	0.913	0.406	2e-91
213495898		466	protection of telomeres 1 protein [Solan	0.982	0.980	0.400	3e-90
255579267		449	conserved hypothetical protein [Ricinus	0.944	0.977	0.405	4e-89
213495878		462	protection of telomeres 1 protein [Popul	0.976	0.982	0.389	4e-86
213495900		466	protection of telomeres 1 protein [Nicot	0.939	0.937	0.400	8e-86
449439461		449	PREDICTED: protection of telomeres prote	0.950	0.984	0.383	2e-84
213495880		467	protection of telomeres 1 protein [Helia	0.982	0.978	0.388	3e-82
213495876		466	protection of telomeres 1 protein [Lactu	0.956	0.954	0.385	5e-80

>gi\|255556592\|ref\|XP_002519330.1\| conserved hypothetical protein [Ricinus communis] gi\|223541645\|gb\|EEF43194.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/440 (49%), Positives = 292/440 (66%), Gaps = 20/440 (4%)

Query: 11  VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID 70
           + I E+A +V  KVNL+G+V+EFS PRKS GTD+V +LKIVD S QSPEL  NIFT  ++
Sbjct: 8   IPIGEVANYVDKKVNLIGIVVEFSFPRKSNGTDFVSILKIVDQSPQSPELSANIFTEKVE 67

Query: 71  QLPRVLSPRDLILLKNVMIKKHQ--AELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRF 128
            LP V S  DLI L+NV I+K+     ++AVF K  SSF LF G+   ++  YQ+  + F
Sbjct: 68  HLPVVKSHGDLIFLQNVTIEKYDDGGVVNAVFDKRFSSFGLFWGSYADDIFCYQTF-RSF 126

Query: 129 EITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLW 188
            ++ +E   +  LR W       SG+N+YL+S+KDI++  YFDLVC+V HVSYD S+G+W
Sbjct: 127 SLSWSERNDLINLRNWWPNAHLDSGTNEYLVSVKDINKGTYFDLVCQVLHVSYDVSRGVW 186

Query: 189 MLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYE 248
           +LFVWDGTD P LS+  KL+DEE +PLPL +ES PL  + L NF  +GTVLRV  D  +E
Sbjct: 187 ILFVWDGTDAPLLSLDQKLKDEEKDPLPLQVESVPLGRDILCNFHHIGTVLRVMADECHE 246

Query: 249 NFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISG 308
           N    F   GKWVRIRNMS +V +GMW+G L  SSK+RL +DND +V DY R+F+ER S 
Sbjct: 247 NLCPQFQGIGKWVRIRNMSGKVWAGMWYGALNPSSKVRLLADNDGIVVDYKRKFKERKS- 305

Query: 309 GHGHMPIWTDPSSQFLTEVDWVN----VASVTLMKIATQLQGNVRCCCIVRVVSIHPFQA 364
               +P+W+ P+   LTE+++ +    +  +TLM + T+ + +    CIVRVV+IHP++ 
Sbjct: 306 ERDRLPLWS-PNDD-LTEIEYDDEGDSIQFMTLMDVLTRKKDDDLFYCIVRVVAIHPYEL 363

Query: 365 EHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFGGSPPPDVLTKKIKMLLGMPEH 424
           +   S   S E  M+LTLEDPT RIHA L G++ VKF  G   PDV+  K+K LLG+ EH
Sbjct: 364 KVLCS---SDEGVMRLTLEDPTGRIHAYLLGEDLVKFVNGM-APDVVNGKMKELLGVAEH 419

Query: 425 ----EDGNDDMVRNPPWIKC 440
               EDG  D  R PP+++C
Sbjct: 420 ERRIEDG--DCTRFPPFVRC 437

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297734334\|emb\|CBI15581.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225456171\|ref\|XP_002278684.1\| PREDICTED: uncharacterized protein LOC100262869 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|213495898\|gb\|ACJ49169.1\| protection of telomeres 1 protein [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|255579267\|ref\|XP_002530479.1\| conserved hypothetical protein [Ricinus communis] gi\|223529976\|gb\|EEF31902.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|213495878\|gb\|ACJ49159.1\| protection of telomeres 1 protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|213495900\|gb\|ACJ49170.1\| protection of telomeres 1 protein [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|449439461\|ref\|XP_004137504.1\| PREDICTED: protection of telomeres protein 1a-like [Cucumis sativus] gi\|449503109\|ref\|XP_004161838.1\| PREDICTED: protection of telomeres protein 1a-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|213495880\|gb\|ACJ49160.1\| protection of telomeres 1 protein [Helianthus argophyllus]	Back alignment and taxonomy information

>gi\|213495876\|gb\|ACJ49158.1\| protection of telomeres 1 protein [Lactuca sativa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		465
TAIR\|locus:2051214		467	AtPOT1a "Protection of Telomer	0.961	0.957	0.319	1.6e-54
TAIR\|locus:2164295		454	AtPOT1b "protection of telomer	0.903	0.925	0.338	1.2e-49
UNIPROTKB\|F1NSB0		778	POT1 "Protection of telomeres	0.451	0.269	0.275	3.9e-19
UNIPROTKB\|P62597		778	POT1 "Protection of telomeres	0.451	0.269	0.275	3.9e-19
UNIPROTKB\|Q9NUX5		634	POT1 "Protection of telomeres	0.451	0.331	0.293	5.3e-15
UNIPROTKB\|Q95K48		634	POT1 "Protection of telomeres	0.451	0.331	0.293	8.6e-15
UNIPROTKB\|F1P716		785	POT1 "Uncharacterized protein"	0.451	0.267	0.293	1.1e-13
UNIPROTKB\|E1BGK3		782	POT1 "Uncharacterized protein"	0.567	0.337	0.266	3.8e-13
ZFIN\|ZDB-GENE-110324-1		773	pot1 "protection of telomeres	0.391	0.235	0.312	1.3e-12
RGD\|1582873		636	Pot1b "protection of telomeres	0.354	0.259	0.294	2.6e-11

TAIR\|locus:2051214 AtPOT1a "Protection of Telomeres 1a" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 154/482 (31%), Positives = 246/482 (51%)

Query:     1 MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPEL 60
             M+ +R    +++IK+    +  +V+L+G+VLE   P++ +  D++C L+I+DD+  SP L
Sbjct:     1 MAKKRESPKLIKIKDAIKLINQQVSLIGIVLEQREPKQCRNNDWICTLRIIDDTYPSPGL 60

Query:    61 LVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA--ELSAVFYKDSSSFALFDGNSGSNL 118
              VN+F+ +++QLP++ +  D+IL   + ++   +   ++A   +  SSFALF+G    + 
Sbjct:    61 TVNVFSKTLEQLPQIKNHDDMILFTRIKMQTFDSGERVNAACSRWVSSFALFEG---VDF 117

Query:   119 LPYQSSPQRFEITEAEERRINVLRQWCVGFE-----FSSGS------NDYLLSLKDISEH 167
             + YQ S    E     +  ++ LR+   G         S S      ++    L++I   
Sbjct:   118 VCYQCSTNFHEEEALYKSAMDDLRKVFAGCSQVIKAMQSISYRTKPCSEVFSFLREIKIG 177

Query:   168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKL--EDEEHNPLPLHIESSPLD 225
             + FDLVC++ H   D S     +FVWDGTD PP SI  K   ED+  + L +H   + L 
Sbjct:   178 KRFDLVCRILHADEDTSA----VFVWDGTDAPPASILAKRSEEDKAFSSLSVH---TLLS 230

Query:   226 LETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285
              + L +F  VGT+LRV    S   F  Y    G WV++ ++ C+V  G W   + SS+K+
Sbjct:   231 RDVLLSFPTVGTILRVHL--SSHLF--YRVKPGDWVKLYHLLCEVDRGSWVIKVTSSTKV 286

Query:   286 RLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQ 345
                + +D +V   MR + +R+S   GH+  W  PS   LTE D      VTLM I T  +
Sbjct:   287 HHLAQDDRLVEKIMRIYDKRLSSKLGHISFWCFPSPPGLTETDDNCAPFVTLMDIITFPK 346

Query:   346 GNXXXXXXXXXXSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFG-G 404
                         + +P+Q E + S      + + LTLED TA + A LC K+   F+G G
Sbjct:   347 VTCKYRCIVRVVAAYPWQVEDFCSDENRRHHQVLLTLEDSTATLEAFLCNKDAEYFWGLG 406

Query:   405 SPPPDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFL---HLKESDGGRNRVYYIRWTK 461
                 + L KK   LLG+   E  N    RNPPWI+C +   +  ++D    R+Y I  T+
Sbjct:   407 FQDTETLRKKRNWLLGI--RESSNFVAPRNPPWIECCILSYYTNKADPWNTRLYRIFGTR 464

Query:   462 LV 463
             L+
Sbjct:   465 LL 466

GO:0000723 "telomere maintenance" evidence=IEA;IMP

GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0032206 "positive regulation of telomere maintenance" evidence=IMP

GO:0043047 "single-stranded telomeric DNA binding" evidence=TAS

GO:0032212 "positive regulation of telomere maintenance via telomerase" evidence=IMP

GO:0042162 "telomeric DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR\|locus:2164295 AtPOT1b "protection of telomeres 1b" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NSB0 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|P62597 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NUX5 POT1 "Protection of telomeres protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q95K48 POT1 "Protection of telomeres protein 1" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P716 POT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BGK3 POT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-110324-1 pot1 "protection of telomeres 1 homolog" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1582873 Pot1b "protection of telomeres 1B" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56Y52	POT1A_ARATH	No assigned EC number	0.3298	0.9612	0.9571	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017843001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (448 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)	•	•	0.484
	GSVIVG00001485001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (307 aa)	•	•	0.471
	GSVIVG00004199001	SubName- Full=Chromosome undetermined scaffold_623, whole genome shotgun sequence; (295 aa)	•	•	0.445

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		465
cd04497		138	cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfami	3e-26
pfam02765		141	pfam02765, Telo_bind, Telomeric single stranded DN	4e-26
smart00976		137	smart00976, Telo_bind, Telomeric single stranded D	8e-22

>gnl\|CDD\|239943 cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)	Back alignment and domain information

 Score =  103 bits (258), Expect = 3e-26
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 11  VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDS-QQSPELLVNIFTSSI 69
             +          VN++GVV++   P +S+GTDY C L I D S   S  L V +F  + 
Sbjct: 4   TPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE 63

Query: 70  DQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFE 129
           + LP V    D+ILL+ V I+ +  +   +     SS+A+F G+ G   +P QSS    E
Sbjct: 64  ESLPIV-KVGDIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDDGVVPIPQQSSKP-VE 121

Query: 130 ITEAEERRINVLRQW 144
               EE  +  LR+W
Sbjct: 122 FGPEEEPSVEELRKW 136

POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. A second OB fold has not been predicted in S. pombe POT1. OnTEBP binds the extreme 3-prime end of telomeric DNA. It is heterodimeric and contains four OB folds - three in the alpha subunit (two in the N-terminal domain and one in the C-terminal domain) and one in the beta subunit. OB1Nalpha, together with the second OB fold of the N-terminal domain of OnTEBP alpha subunit and the beta subunit OB fold, forms a deep cleft that binds ssDNA. Length = 138

>gnl\|CDD\|217218 pfam02765, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13	Back alignment and domain information

>gnl\|CDD\|214949 smart00976, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		465
KOG4757		522	consensus Predicted telomere binding protein [Gene	100.0
cd04497		138	hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f	100.0
PF02765		146	POT1: Telomeric single stranded DNA binding POT1/C	100.0
cd04498		123	hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds simil	99.9
PRK12366		637	replication factor A; Reviewed	99.42
TIGR00617		608	rpa1 replication factor-a protein 1 (rpa1). This f	99.17
PRK12366		637	replication factor A; Reviewed	99.15
PRK07218		423	replication factor A; Provisional	99.05
PRK14699		484	replication factor A; Provisional	98.97
PRK07211		485	replication factor A; Reviewed	98.94
PRK15491		374	replication factor A; Provisional	98.92
PRK06386		358	replication factor A; Reviewed	98.89
PRK15491		374	replication factor A; Provisional	98.78
PRK14699		484	replication factor A; Provisional	98.61
PRK07211		485	replication factor A; Reviewed	98.41
PRK08402		355	replication factor A; Reviewed	98.35
KOG4757		522	consensus Predicted telomere binding protein [Gene	98.26
TIGR00617		608	rpa1 replication factor-a protein 1 (rpa1). This f	97.89
PRK06461		129	single-stranded DNA-binding protein; Reviewed	97.88
cd04475		101	RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor	97.73
cd04491		82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	97.52
PRK07218		423	replication factor A; Provisional	97.49
PRK06461		129	single-stranded DNA-binding protein; Reviewed	97.14
PRK08402		355	replication factor A; Reviewed	97.08
cd04497		138	hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f	96.6
cd03524		75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	96.4
KOG3416		134	consensus Predicted nucleic acid binding protein [	96.35
PF02765		146	POT1: Telomeric single stranded DNA binding POT1/C	95.93
PRK07217		311	replication factor A; Reviewed	95.8
PRK07217		311	replication factor A; Reviewed	95.43
cd04489		78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	95.24
PRK06386		358	replication factor A; Reviewed	95.09
PF01336		75	tRNA_anti-codon: OB-fold nucleic acid binding doma	95.02
cd04481		106	RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc	94.91
cd04474		104	RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor	94.6
cd04476		166	RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds cor	94.58
PF15489		1144	CTC1: CST, telomere maintenance, complex subunit C	94.45
cd04478		95	RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor	94.07
cd04491		82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	93.77
cd04475		101	RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor	93.72
cd04485		84	DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp	93.16
PRK13480		314	3'-5' exoribonuclease YhaM; Provisional	92.62
cd04492		83	YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol	92.42
cd04483		92	hOBFC1_like hOBFC1_like: A subfamily of OB folds s	91.61
PF08646		146	Rep_fac-A_C: Replication factor-A C terminal domai	90.57
cd03524		75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	85.52
PF13742		99	tRNA_anti_2: OB-fold nucleic acid binding domain	85.02
PF01336		75	tRNA_anti-codon: OB-fold nucleic acid binding doma	84.43
cd04488		75	RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f	82.35

>KOG4757 consensus Predicted telomere binding protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.2e-52  Score=414.21  Aligned_cols=430  Identities=22%  Similarity=0.201  Sum_probs=333.5

Q ss_pred             CCCCCcceeehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEE
Q 012376            3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLI   82 (465)
Q Consensus         3 ~~~~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII   82 (465)
                      .-++.|+|..+++++...|+.||+||||++++||++++|+||+||++|+||++.+.||+|++|+++-++||.|+++||||
T Consensus         2 ~~~ds~k~Iri~da~kk~~tiVNl~GiVkef~pp~qs~g~D~~~tv~IvDp~~ss~gLtv~lfSkt~edLP~Ik~~GDii   81 (522)
T KOG4757|consen    2 DVRDSLKLIRISDALKKKNTIVNLIGIVKEFTPPRQSLGKDWVCTVYIVDPDYSSIGLTVHLFSKTGEDLPVIKQVGDII   81 (522)
T ss_pred             CcccchheeechHHHHhcCcEEEEEEEEEeccChhhccCCceEEEEEEeCCCCCCCCcEEEEecCchhhCccccccCcEE
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEEEEEcCeeeEEecCCce-EEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccc
Q 012376           83 LLKNVMIKKHQAELSAVFYKDSS-SFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSL  161 (465)
Q Consensus        83 ~l~rvki~~~~g~~~~~~~~~~s-s~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~L  161 (465)
                      +|||+|||.|+.+.+|+|+..++ +|++|+|+ +.+..|||+|+. |-++       .+||+|++.+.....+ ++ ..+
T Consensus        82 llhRiKiq~y~~rtqgl~s~~fss~~~~Feg~-svd~i~~qssp~-f~~t-------~nlrew~a~~~s~~w~-c~-t~~  150 (522)
T KOG4757|consen   82 LLHRIKIQSYRDRTQGLCSDQFSSAWALFEGN-SVDTICYQSSPR-FMKT-------GNLREWFALYKSKIWD-CQ-TNL  150 (522)
T ss_pred             EEEEEEEEEhhhhhhhhhhcchhhhhhhhcCC-CCCccCCCCchh-hhcc-------chHHHHHHHHhCcccc-cc-cCH
Confidence            99999999999999999987764 59999999 889999999987 8777       7899999988877766 56 789


Q ss_pred             ccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCc-ccCCCCCCccccCCCChhccccCCCcceEEE
Q 012376          162 KDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLED-EEHNPLPLHIESSPLDLETLRNFFPVGTVLR  240 (465)
Q Consensus       162 kdi~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~p~~G~vL~  240 (465)
                      +++.++..-.|.||+++.. ......|. .|||-|.+-..++++..-- --++..|++|++  .+.+.+..||..|.|..
T Consensus       151 ~k~fel~cs~l~~q~v~g~-s~~~~~w~-lv~d~~~h~~~s~~~~~~~~~ySlr~~l~~~~--~~T~~~l~Fp~~g~ts~  226 (522)
T KOG4757|consen  151 HKNFELLCSSLARQNVTGL-SYPSVSWS-LVSDITPHQRCSFYAQVIKTWYSLRNPLLYVT--DPTENLLFFPMSGYTSS  226 (522)
T ss_pred             hHhhhhhcchhhhheeecc-ccccceee-eeecccccccccccccceeeEeeccccccccc--CchHhhhhcccCCceee
Confidence            9999999999999999887 54567777 7999555544442221000 011235777764  56677889999999999


Q ss_pred             EEeccchhhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCCCChhHHHHHHHHHHHHh----------CC-
Q 012376          241 VSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERIS----------GG-  309 (465)
Q Consensus       241 V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~r~r~y~~r~~----------~~-  309 (465)
                      +..+.+.+++..+.+++|.-+..+|+...-+.     +|.++  ++.+  -|+.-..|.-+......          ++ 
T Consensus       227 ~r~~rv~~e~~i~ilq~~~d~~~~Nl~~e~D~-----~f~~~--~~sl--~dh~~lsrc~~~~~saprl~~sl~lhc~~e  297 (522)
T KOG4757|consen  227 SRWDRVSEEFSICILQDEHDFYCRNLIKEGDY-----VFMKN--VRSL--IDHLGLSRCILHGDSAPRLNMSLELHCSEE  297 (522)
T ss_pred             eeeecccccccchhccccchhhhhhhcccccc-----ccccc--chhh--hHHHHHHHHHHHhhccccccceeEeecCcc
Confidence            99988888887888888888888888762221     33332  1111  12322233111111000          00 


Q ss_pred             --CCCCC-CcCCCCCCCCcccccCCCccccHHHHhhCCCCCcceE-EEEEEEe---ecCCCccccccCCCCeEEEEEEEE
Q 012376          310 --HGHMP-IWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCC-CIVRVVS---IHPFQAEHYSSPNGSSEYTMKLTL  382 (465)
Q Consensus       310 --~~~~~-~~~~~~~~~~t~~~~~~~p~ttL~dIL~~p~v~~kfr-~~VRVV~---~~P~~~edf~~~~~~w~~rf~L~l  382 (465)
                        .++.+ ...+-.+...|.+++..+|+++|||+++.+.++.||| |.||+|+   .+|.++|.+.-.+    -...-+.
T Consensus       298 hll~ev~~e~r~~~q~~~tgi~~v~a~fvsl~Ds~t~~~vt~k~R~~vvrfva~~~~~P~sve~l~~i~----i~l~~ic  373 (522)
T KOG4757|consen  298 HLLNEVKPEKRLYVQNCQTGIEAVIAPFVSLMDSETPFIVTEKKRTCVVRFVAHVINYPASVELLTIIT----ILLAPIC  373 (522)
T ss_pred             hhhcccCcccceeecccccCcchhhcccchhhhhccccccchhcceeeeeehhhcccccchhhhhhhhh----hhhHHHh
Confidence              00111 0001124677888899999999999999999999999 9999999   9999999985331    1344457


Q ss_pred             eCCCceEEEEEeccccch-----hcCCC-CChHHHHHHHHHHhCCCCCCCCCCCCccCCcceeeeeeeeeecCCc-----
Q 012376          383 EDPTARIHALLCGKEWVK-----FFGGS-PPPDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFLHLKESDGGR-----  451 (465)
Q Consensus       383 ED~t~ri~~~v~~~da~~-----f~~~~-~~~~~L~~kl~~L~G~~e~~~~~~~~~~n~pw~~CCi~sY~v~~~~-----  451 (465)
                      +|+++|.|+.++..|...     +||-. .+..++..+|+.|+|+.+.  +  ..|+++||++||....|-.+-+     
T Consensus       374 ~l~n~r~H~~l~~le~s~p~s~~~fgc~~~~~~~~v~~ln~Lv~~e~~--~--~vP~~~~~v~~~~l~~~s~~l~~~l~d  449 (522)
T KOG4757|consen  374 NLLNPRKHRLLVQLEDSWPKSLTQFGCLSQPPSSYVWMLNLLVRDESN--V--TVPVIFFDVDAAELINSSKKLPCNLAD  449 (522)
T ss_pred             hhhchhhhhhhhhhcccCcccceeeeeccCCHHHHHHHHHHHhccccc--c--ccccccchhheeeeccccccccchhcc
Confidence            889999999888888775     77744 5678899999999998333  2  2689999999999999888643     


Q ss_pred             -eEEEEEeeeEEcC
Q 012376          452 -NRVYYIRWTKLVT  464 (465)
Q Consensus       452 -~r~f~~F~T~i~~  464 (465)
                       +|+||||++-|.-
T Consensus       450 ~~~~fqi~ds~il~  463 (522)
T KOG4757|consen  450 HQMTFQIKDSLILI  463 (522)
T ss_pred             ccceEEecceeeee
Confidence             7999999998864

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)	Back alignment and domain information

>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []	Back alignment and domain information

>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1)	Back alignment and domain information

>PRK12366 replication factor A; Reviewed	Back alignment and domain information

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)	Back alignment and domain information

>PRK12366 replication factor A; Reviewed	Back alignment and domain information

>PRK07218 replication factor A; Provisional	Back alignment and domain information

>PRK14699 replication factor A; Provisional	Back alignment and domain information

>PRK07211 replication factor A; Reviewed	Back alignment and domain information

>PRK15491 replication factor A; Provisional	Back alignment and domain information

>PRK06386 replication factor A; Reviewed	Back alignment and domain information

>PRK15491 replication factor A; Provisional	Back alignment and domain information

>PRK14699 replication factor A; Provisional	Back alignment and domain information

>PRK07211 replication factor A; Reviewed	Back alignment and domain information

>PRK08402 replication factor A; Reviewed	Back alignment and domain information

>KOG4757 consensus Predicted telomere binding protein [General function prediction only]	Back alignment and domain information

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)	Back alignment and domain information

>PRK06461 single-stranded DNA-binding protein; Reviewed	Back alignment and domain information

>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)	Back alignment and domain information

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)	Back alignment and domain information

>PRK07218 replication factor A; Provisional	Back alignment and domain information

>PRK06461 single-stranded DNA-binding protein; Reviewed	Back alignment and domain information

>PRK08402 replication factor A; Reviewed	Back alignment and domain information

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)	Back alignment and domain information

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]	Back alignment and domain information

>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []	Back alignment and domain information

>PRK07217 replication factor A; Reviewed	Back alignment and domain information

>PRK07217 replication factor A; Reviewed	Back alignment and domain information

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit	Back alignment and domain information

>PRK06386 replication factor A; Reviewed	Back alignment and domain information

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands	Back alignment and domain information

>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)	Back alignment and domain information

>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)	Back alignment and domain information

>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70)	Back alignment and domain information

>PF15489 CTC1: CST, telomere maintenance, complex subunit CTC1	Back alignment and domain information

>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)	Back alignment and domain information

>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)	Back alignment and domain information

>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)	Back alignment and domain information

>PRK13480 3'-5' exoribonuclease YhaM; Provisional	Back alignment and domain information

>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1)	Back alignment and domain information

>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1)	Back alignment and domain information

>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing	Back alignment and domain information

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain	Back alignment and domain information

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands	Back alignment and domain information

>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		465
1xjv_A		294	Crystal Structure Of Human Pot1 Bound To Telomeric		4e-15
3kjo_A		299	Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length		4e-15

>pdb|1XJV|A Chain A, Crystal Structure Of Human Pot1 Bound To Telomeric Single- Stranded Dna (Ttagggttag) Length = 294

Back alignment and structure

Iteration: 1

Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 12/178 (6%) Query: 24 VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83 VN+ GVV F P S+GTDY V+ IVD Q + +L +F+ + + LP + D++ Sbjct: 18 VNVYGVVKFFKPPYLSKGTDYCSVVTIVD--QTNVKLTCLLFSGNYEALPIIYKNGDIVR 75 Query: 84 LKNVMIKKHQAELSAVFYKDSSSFA--LFDGNSGSNLLPYQSSPQRFEITEAEERRINVL 141 + I+ ++ E + SS FA F+G G+ ++P ++S + F T + + + L Sbjct: 76 FHRLKIQVYKKETQGI---TSSGFASLTFEGTLGAPIIP-RTSSKYFNFTTEDHKMVEAL 131 Query: 142 RQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVP 199 R W S + LL L D+ +YFDL C++ + D ++L VWDGT P Sbjct: 132 RVWASTHMSPSWT---LLKLCDVQPMQYFDLTCQLLGKAEVDGAS-FLLKVWDGTRTP 185

PyMOL of 1xjv

>pdb|3KJO|A Chain A, Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length = 299

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		465
1jb7_A		495	Telomere-binding protein alpha subunit; DNA-protei	5e-53
1xjv_A		294	Protection of telomeres 1; protein-DNA complex, si	1e-52
1qzg_A		187	Protection of telomeres protein 1; protrein-DNA co	5e-23
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Length = 495	Back alignment and structure

 Score =  184 bits (468), Expect = 5e-53
 Identities = 85/520 (16%), Positives = 168/520 (32%), Gaps = 113/520 (21%)

Query: 2   SSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDS------- 54
           S + ++   V + + ++      +   VV++ + P K+    Y+C LKIVD +       
Sbjct: 30  SDKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQK 89

Query: 55  ---QQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVF-YKDSSSFALF 110
                S    + ++    + LP +    D+I +    ++ +  +         SSS+ALF
Sbjct: 90  GAGDASDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALF 149

Query: 111 DGNSGS------------NLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSG---SN 155
             +  S            +  P+  S +   I + E   +  LR+W   +  S     S+
Sbjct: 150 STDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWANQYFSSYSVISSD 209

Query: 156 DYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL 215
            Y    K  ++   FD+V K+  V ++  +    L + D +     ++  KL+       
Sbjct: 210 MYTALNKAQAQKGDFDVVAKILQV-HELDEYTNELKLKDASGQVFYTLSLKLKFPHVRT- 267

Query: 216 PLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMW 275
                                                     G+ VRIR+ +   +S   
Sbjct: 268 ------------------------------------------GEVVRIRSATYDETSTQK 285

Query: 276 HGLLQSS-SKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVD--WVNV 332
             L+ S  S I  F  +  +  +   + ++  S     +      ++  LTEVD     +
Sbjct: 286 KVLILSHYSNIITFIQSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVLTEVDKKHAAL 345

Query: 333 ASVTLMKIAT------QLQGNVRCCCIVRVVSIHPFQAEHYSSP---------------- 370
            S +L  +        +LQ          V  I P   + +                   
Sbjct: 346 PSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEPSDVKEWVKGYDRKTKKSSSLKGASG 405

Query: 371 NGSSEYTMKLTLEDP-------TARIHALLCGKEWVKFFGGSPPPDVLTKKIKMLLGMPE 423
            G + + ++  ++D        T R+           FF             +  L    
Sbjct: 406 KGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKADNLHKNADARKKL---- 461

Query: 424 HEDGNDDMVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLV 463
            ED  + + +   ++   +        RN  Y I+ TKL+
Sbjct: 462 -EDSAELLTKFNSYVDAVV------ERRNGFYLIKDTKLI 494

PyMOL of 1jb7

>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Length = 294	Back alignment and structure

>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Length = 187	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		465
1jb7_A		495	Telomere-binding protein alpha subunit; DNA-protei	100.0
1xjv_A		294	Protection of telomeres 1; protein-DNA complex, si	100.0
4hik_A		143	Protection of telomeres protein 1; specificity, pl	100.0
1qzg_A		187	Protection of telomeres protein 1; protrein-DNA co	100.0
4gop_C		444	Putative uncharacterized protein; OB fold, ssDNA b	99.2
1jmc_A		246	Protein (replication protein A (RPA)); human ssDNA	98.54
2k50_A		115	Replication factor A related protein; uncharacteri	98.41
2k75_A		106	Uncharacterized protein TA0387; closed beta barrel	98.25
1o7i_A		119	SSB, SSO2364, single stranded DNA binding protein;	98.07
1jmc_A		246	Protein (replication protein A (RPA)); human ssDNA	98.01
4gop_C		444	Putative uncharacterized protein; OB fold, ssDNA b	97.96
2kbn_A		109	Conserved protein; nucleic acid binding protein, b	97.7
3dm3_A		105	Replication factor A; probably plays AN essential	97.6
2k75_A		106	Uncharacterized protein TA0387; closed beta barrel	97.54
2k50_A		115	Replication factor A related protein; uncharacteri	97.38
3e0e_A		97	Replication protein A; structural genomics, PSI-2,	97.38
1o7i_A		119	SSB, SSO2364, single stranded DNA binding protein;	97.34
1wjj_A		145	Hypothetical protein F20O9.120; DNA-binding protei	97.33
2kbn_A		109	Conserved protein; nucleic acid binding protein, b	97.29
1wjj_A		145	Hypothetical protein F20O9.120; DNA-binding protei	97.08
1xjv_A		294	Protection of telomeres 1; protein-DNA complex, si	96.77
3dm3_A		105	Replication factor A; probably plays AN essential	96.69
3e0e_A		97	Replication protein A; structural genomics, PSI-2,	96.16
1ynx_A		114	Replication factor-A protein 1; canonical OB fold,	95.71
1jb7_A		495	Telomere-binding protein alpha subunit; DNA-protei	94.9
1qzg_A		187	Protection of telomeres protein 1; protrein-DNA co	94.37
3u4z_A		109	Telomerase-associated protein 82; TEB1, processivi	93.93
1l1o_C		181	Replication protein A 70 kDa DNA-binding subunit;	93.58
1ynx_A		114	Replication factor-A protein 1; canonical OB fold,	92.5
4gop_B		136	Putative uncharacterized protein; OB fold, ssDNA b	92.4
1miu_A		738	BRCA2, breast cancer type 2 susceptibility protein	91.85
3kdf_D		132	Replication protein A 32 kDa subunit; wheat GERM c	91.66
3ebe_A		200	Protein MCM10 homolog; OB-fold, zinc finger, CCCH,	91.32
3u58_A		213	Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1	90.59
4hik_A		143	Protection of telomeres protein 1; specificity, pl	89.52
2pi2_A		270	Replication protein A 32 kDa subunit; FULL-length	87.7
3u50_C		172	Telomerase-associated protein 82; TEB1, processivi	83.73

>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A	Back alignment and structure

Probab=100.00  E-value=3.7e-82  Score=664.48  Aligned_cols=388  Identities=20%  Similarity=0.275  Sum_probs=334.0

Q ss_pred             CCCCCcceeehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCC-----CCe-----EEEEecCCCCCC
Q 012376            3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQS-----PEL-----LVNIFTSSIDQL   72 (465)
Q Consensus         3 ~~~~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~-----~gl-----~v~iF~~~~~~L   72 (465)
                      +..++|+|++|++|....++.|||||||+|+++|++|+|+||+|||+|+|+|+..     .||     +|+||++++++|
T Consensus        31 ~~~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L  110 (495)
T 1jb7_A           31 DKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL  110 (495)
T ss_dssp             -----CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred             cccCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence            4578899999999998889999999999999999999999999999999999982     389     999999999999


Q ss_pred             CCCCCCCCEEEEeeEEEEEEcCeeeEEecCCc-eEEEEEeCCC------------CCCCCccccCCCCCCCCHHHHHHHH
Q 012376           73 PRVLSPRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGNS------------GSNLLPYQSSPQRFEITEAEERRIN  139 (465)
Q Consensus        73 P~v~~~GDII~l~rvki~~~~g~~~~~~~~~~-ss~~lf~~~~------------~~~~~Py~~s~~~~~~~~~e~~~v~  139 (465)
                      |.|.++||||+|||++|+.|+|+++++++..+ ||||||++..            +.++.||+.|+.+|+++++|++++.
T Consensus       111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~  190 (495)
T 1jb7_A          111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ  190 (495)
T ss_dssp             CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred             CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence            99988999999999999999999999998776 8999999987            6778999998667999999999999


Q ss_pred             HHHHhhhcCccc---CCCcccccccc-cccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCC
Q 012376          140 VLRQWCVGFEFS---SGSNDYLLSLK-DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL  215 (465)
Q Consensus       140 ~Lr~W~~~~~~~---~~~~~f~~~Lk-di~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~  215 (465)
                      .||+|+.++...   .++.+| .+|+ ||++++||||+|||||++ ..++++++|||||||++|+++             
T Consensus       191 ~LR~W~~~~~~~~~~~~~~~f-~~L~~di~~~~f~DLv~qVv~~~-~~d~~~~~L~VwDgT~~~~~~-------------  255 (495)
T 1jb7_A          191 NLRKWANQYFSSYSVISSDMY-TALNKAQAQKGDFDVVAKILQVH-ELDEYTNELKLKDASGQVFYT-------------  255 (495)
T ss_dssp             HHHHHHHHHHHHSCSSCGGGS-CCGGGGGGCSSCEEEEEEEEEEE-ECSSSEEEEEEEETTCCEEEE-------------
T ss_pred             HHHHHHHhcccccccccccch-hhhhhhhccCCceeEEEEEeEEe-ccCCCeEEEEEEeCCCCCcce-------------
Confidence            999999887653   355678 8999 999999999999999999 557899999999999998865             


Q ss_pred             CCccccCCCChhccccCCCc--ceEEEEEeccchhhhh-ccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceE------
Q 012376          216 PLHIESSPLDLETLRNFFPV--GTVLRVSTDRSYENFG-RYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR------  286 (465)
Q Consensus       216 p~~~~~~~l~~~~~~~~p~~--G~vL~V~~~~~~~~~~-~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~------  286 (465)
                                ++.++++|.+  |++|+|..++..+..+ .+.++.|+|   +||.          ++..++|++      
T Consensus       256 ----------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~  312 (495)
T 1jb7_A          256 ----------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAK  312 (495)
T ss_dssp             ----------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHH
T ss_pred             ----------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhc
Confidence                      3457899988  9999999997776554 466889999   5777          566678887      


Q ss_pred             EcCCCChhHHHHHHHHHHHHhCCCCCCCCcCCCCCCCCcccc--cCCCccccHHHHhhC----CCCCcc--eEEEEEEEe
Q 012376          287 LFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVD--WVNVASVTLMKIATQ----LQGNVR--CCCIVRVVS  358 (465)
Q Consensus       287 ~l~~~d~~v~~r~r~y~~r~~~~~~~~~~~~~~~~~~~t~~~--~~~~p~ttL~dIL~~----p~v~~k--fr~~VRVV~  358 (465)
                      +++++   +.++.     +       +|+++.++++.+|+++  |+++|+|||||||++    |++++|  |||.||||+
T Consensus       313 ~l~~~---~~~~~-----~-------~~~~~~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~  377 (495)
T 1jb7_A          313 IQDDH---SVEVA-----S-------LKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTK  377 (495)
T ss_dssp             SCCCC---HHHHH-----H-------TTSSSCSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEE
T ss_pred             ccchh---hhhhh-----h-------cccccCCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEE
Confidence            77665   33331     1       5677777888899988  999999999999988    889888  999999999


Q ss_pred             ecCCCccccccC-----------C-----CCeEEEEEEEEeCCC-------ceEEEEEeccccchhcCCCCC--------
Q 012376          359 IHPFQAEHYSSP-----------N-----GSSEYTMKLTLEDPT-------ARIHALLCGKEWVKFFGGSPP--------  407 (465)
Q Consensus       359 ~~P~~~edf~~~-----------~-----~~w~~rf~L~lED~t-------~ri~~~v~~~da~~f~~~~~~--------  407 (465)
                      |||+++||||++           .     |+++|||+|+|||+|       +||+|||+|+||+.||+ +++        
T Consensus       378 ~~P~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~-l~a~nL~~n~~  456 (495)
T 1jb7_A          378 IEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN-VKADNLHKNAD  456 (495)
T ss_dssp             EESSSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS-SCCCCTTTCHH
T ss_pred             ecCCCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC-CChHhhhcCHH
Confidence            999999999943           2     367999999999999       99999999999999998 643        


Q ss_pred             -hHHHHHHHHHHhCCCCCCCCCCCCccCCcceeeeeeeeeecCCceEEEEEeeeEEc
Q 012376          408 -PDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLV  463 (465)
Q Consensus       408 -~~~L~~kl~~L~G~~e~~~~~~~~~~n~pw~~CCi~sY~v~~~~~r~f~~F~T~i~  463 (465)
                       +.+|||||..|.-           ..+  ||+|||+.      ++..|+||+|+|+
T Consensus       457 ~~~~L~e~~~~l~~-----------~~~--~~d~~~~~------~~~~y~~~~t~~~  494 (495)
T 1jb7_A          457 ARKKLEDSAELLTK-----------FNS--YVDAVVER------RNGFYLIKDTKLI  494 (495)
T ss_dssp             HHHHHHHHHHHHHS-----------TTE--EEEEEEEE------ETTEEEEESEEEC
T ss_pred             HHHHHHHHHHHhcc-----------CCc--eEEEEEEe------ecceEEeeeeeec
Confidence             5899999998752           122  99999944      2779999999996

PyMOL of 1jb7

>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A	Back alignment and structure

>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*	Back alignment and structure

>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A	Back alignment and structure

>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}	Back alignment and structure

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A	Back alignment and structure

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}	Back alignment and structure

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}	Back alignment and structure

>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3	Back alignment and structure

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A	Back alignment and structure

>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}	Back alignment and structure

>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A	Back alignment and structure

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}	Back alignment and structure

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}	Back alignment and structure

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}	Back alignment and structure

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A	Back alignment and structure

>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3	Back alignment and structure

>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3	Back alignment and structure

>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A	Back alignment and structure

>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3	Back alignment and structure

>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A	Back alignment and structure

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}	Back alignment and structure

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A	Back alignment and structure

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A	Back alignment and structure

>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A	Back alignment and structure

>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}	Back alignment and structure

>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3	Back alignment and structure

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}	Back alignment and structure

>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A	Back alignment and structure

>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B	Back alignment and structure

>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A	Back alignment and structure

>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}	Back alignment and structure

>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*	Back alignment and structure

>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		465
d1xjva1		140	b.40.4.3 (A:6-145) Protection of telomeres protein	3e-33
d1jb7a1		169	b.40.4.3 (A:36-204) Telomere end binding protein a	3e-31
d1qzga_		170	b.40.4.3 (A:) Protection of telomeres protein 1, P	1e-28
d1xjva2		151	b.40.4.3 (A:149-299) Protection of telomeres prote	1e-15

>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140	Back information, alignment and structure


class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 3e-33
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 24  VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
           VN+ GVV  F  P  S+GTDY  V+ IVD +  + +L   +F+ + + LP +    D++ 
Sbjct: 18  VNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT--NVKLTCLLFSGNYEALPIIYKNGDIVR 75

Query: 84  LKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQ 143
              + I+ ++ E   +     +S   F+G  G+ ++P  SS   F  T  + + +  LR 
Sbjct: 76  FHRLKIQVYKKETQGITSSGFASLT-FEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALRV 133

Query: 144 W 144
           W
Sbjct: 134 W 134

PyMOL of d1xjva1

>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Length = 169	Back information, alignment and structure

>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 170	Back information, alignment and structure

>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 151	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		465
d1jb7a1		169	Telomere end binding protein alpha subunit {Oxytri	100.0
d1xjva1		140	Protection of telomeres protein 1, Pot1 {Human (Ho	100.0
d1qzga_		170	Protection of telomeres protein 1, Pot1 {Fission y	100.0
d1xjva2		151	Protection of telomeres protein 1, Pot1 {Human (Ho	99.93
d1jmca2		122	Replication protein A 70 KDa subunit (RPA70) {Huma	98.64
d1jb7a3		167	Telomere end binding protein alpha subunit {Oxytri	97.83
d1o7ia_		115	Archaeal ssDNA-binding protein {Archaeon Sulfolobu	97.73
d1o7ia_		115	Archaeal ssDNA-binding protein {Archaeon Sulfolobu	97.5
d1wjja_		145	Hypothetical protein At4g28440 (F20O9.120) {Thale	97.5
d1wjja_		145	Hypothetical protein At4g28440 (F20O9.120) {Thale	97.1
d1jb7a2		124	Telomere end binding protein alpha subunit {Oxytri	96.79
d1jmca2		122	Replication protein A 70 KDa subunit (RPA70) {Huma	96.25
d1xjva1		140	Protection of telomeres protein 1, Pot1 {Human (Ho	95.71
d1jmca1		116	Replication protein A 70 KDa subunit (RPA70) {Huma	95.52
d1jb7a2		124	Telomere end binding protein alpha subunit {Oxytri	94.77
d1jb7a1		169	Telomere end binding protein alpha subunit {Oxytri	93.83
d1l1oc_		178	Replication protein A 70 KDa subunit (RPA70) {Huma	93.83
d1qzga_		170	Protection of telomeres protein 1, Pot1 {Fission y	91.35
d1jmca1		116	Replication protein A 70 KDa subunit (RPA70) {Huma	91.05
d1xjva2		151	Protection of telomeres protein 1, Pot1 {Human (Ho	83.85

>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Telomere end binding protein alpha subunit
species: Oxytricha nova [TaxId: 200597]

Probab=100.00  E-value=9.9e-39  Score=287.99  Aligned_cols=142  Identities=22%  Similarity=0.349  Sum_probs=131.3

Q ss_pred             cceeehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCC----------CCCeEEEEecCCCCCCCCCCC
Q 012376            8 GGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ----------SPELLVNIFTSSIDQLPRVLS   77 (465)
Q Consensus         8 y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~----------~~gl~v~iF~~~~~~LP~v~~   77 (465)
                      |+|++|+||....++.|||||||+|+++|++|+|+||+|||+|+|+|++          +.||+|+||+++.++||.|.+
T Consensus         1 Y~y~~l~~a~~~~~~~vNv~GVV~~~~~p~~s~g~D~~~tl~I~D~S~~~~~~~~~~~~~~~l~v~~F~~~~~~LP~V~~   80 (169)
T d1jb7a1           1 YEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHR   80 (169)
T ss_dssp             CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCCCCE
T ss_pred             CeeeeHHHHHHhcCCeEEEEEEEeecCCceecCCCcEEEEEEEEeCCCCccccccccccCCceEEEEECCCHHHCCCCCC
Confidence            8999999999889999999999999999999999999999999999985          358999999999999999988


Q ss_pred             CCCEEEEeeEEEEEEcCeeeEEecCC-ceEEEEEeCC------------CCCCCCccccCCCCCCCCHHHHHHHHHHHHh
Q 012376           78 PRDLILLKNVMIKKHQAELSAVFYKD-SSSFALFDGN------------SGSNLLPYQSSPQRFEITEAEERRINVLRQW  144 (465)
Q Consensus        78 ~GDII~l~rvki~~~~g~~~~~~~~~-~ss~~lf~~~------------~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W  144 (465)
                      +||||+|||++|++|||+++++++.. .||||||++.            .+.++.|||+|+++|+++++|+++++.||+|
T Consensus        81 ~GDII~l~rv~i~~~~g~~~~v~~~~~~SswavF~~~~~~~~~~~~~~~~~~~~~Pyq~S~~~~~~~~~d~~~v~~LR~W  160 (169)
T d1jb7a1          81 AGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKW  160 (169)
T ss_dssp             ETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHHHHHHH
T ss_pred             CCCEEEEEEEEEEEECCceeEEEccccceeEEEEeCCCCCcccccccccCCCCcccccccCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998754 4899999985            3356899999999999999999999999999


Q ss_pred             hhcCc
Q 012376          145 CVGFE  149 (465)
Q Consensus       145 ~~~~~  149 (465)
                      +++|.
T Consensus       161 a~~~~  165 (169)
T d1jb7a1         161 ANQYF  165 (169)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98764

PyMOL of d1jb7a1

>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jb7a3 b.40.4.3 (A:329-495) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure