Citrus Sinensis ID: 012390

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFQGPVSCSGNGSYSYSRSSPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKS
ccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHcHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHcHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHcc
ccccEEcEEEEEccccccccccccccccEccccccccccccccccccccccccccccEcccHHccccccHccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHEEEccccccccHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccEEEcHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHccccccccEEEccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHcc
mtgmavptialyasppssvcsathqinahttydfdlnsrssastsstaaapssqkqtigglsclfssssemgsyRSEELKELSssfgyayspsklcgsssslkrdqspvsvfqgpvscsgngsysysrssppirtarekadvnvnfhtffkgssglfNGFVRNALgscvdydsssfrvhngdavlnvgssaALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAhrgqmrasgdpylLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNmmtldalplckrQRFAKETLEIFVPLANRLGISTWKVQLENLcfkhlnpdqhtELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKS
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSStaaapssqkqtiggLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFqgpvscsgngsysysrsspPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQlsklarenntasktveadrLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKS
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNsrssastsstaaapssQKQTIGGLSCLFssssemgsyrseeLKELSSSFGYAYspsklcgsssslkRDQSPVSVFQGPVscsgngsysysrssPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKS
********IALY*******CSATHQINAHTTYD***********************************************************************************************************DVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLS***************VEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM***
****AVP*IALYASPPSSVCSATHQINAH**********************************LF************************************************************************************************RNA*******************************************GNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARE******TVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK*
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLN********************IGGLSCLFSS****************SSFGYAYSPSK****************VFQGPVSCSG*************RTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKS
**GMAVPTIALYASPPSSVCSATHQINAHTTYD***********************************************************************DQSPVSVFQGP********************************T**KGSSGLFNGFVRNALGSCVDYDSSSFRVHN*DAVL**GSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFQGPVSCSGNGSYSYSRSSPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query464 2.2.26 [Sep-21-2011]
P74007 760 Probable guanosine-3',5'- N/A no 0.482 0.294 0.433 5e-43
O54408 734 GTP pyrophosphokinase OS= yes no 0.482 0.305 0.401 4e-41
Q8CS97 729 GTP pyrophosphokinase OS= yes no 0.489 0.311 0.362 5e-40
Q5HNR8 729 GTP pyrophosphokinase OS= yes no 0.489 0.311 0.362 5e-40
P0AG26 702 Guanosine-3',5'-bis(dipho yes no 0.476 0.314 0.411 4e-39
P0AG24 702 Bifunctional (p)ppGpp syn N/A no 0.476 0.314 0.411 4e-39
P0AG25 702 Guanosine-3',5'-bis(dipho N/A no 0.476 0.314 0.411 4e-39
O52177 757 GTP pyrophosphokinase OS= yes no 0.489 0.299 0.384 4e-39
Q6GG70 736 GTP pyrophosphokinase OS= yes no 0.489 0.308 0.354 1e-38
P0A0E9 736 GTP pyrophosphokinase OS= yes no 0.489 0.308 0.354 1e-38
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1 Back     alignment and function desciption
 Score =  175 bits (444), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 142/233 (60%), Gaps = 9/233 (3%)

Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
            + +AF  A   H  Q R SG+PY+ H V  A LL  +G +  ++AAG LHD ++D  +S
Sbjct: 53  LICRAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDLGGDEAMIAAGFLHDVVEDTDIS 112

Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
            + I   FG   A LVEGV+KLS+       N +++   +A+    MFLAMA D R +++
Sbjct: 113 IEQIEALFGEETASLVEGVTKLSKF------NFSSTTEHQAENFRRMFLAMAKDIRVIVV 166

Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
           KLADRLHNM TLDAL   K++R A+ET +IF PLANRLGI  +K +LE+L FK+L PD +
Sbjct: 167 KLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYLEPDSY 226

Query: 411 TELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461
            ++ S +VE     E+ + +  + L   L+D+ I    L GR K LY I+ KM
Sbjct: 227 RKIQSLVVEKRGDRESRLETVKDMLRFRLRDEGIEHFELQGRPKHLYGIYYKM 279
In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 3EC: .EC: 1EC: .EC: 7EC: .EC: 2
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 Back     alignment and function description
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Shigella flexneri GN=spoT PE=3 SV=1 Back     alignment and function description
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli (strain K12) GN=spoT PE=1 SV=1 Back     alignment and function description
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1 Back     alignment and function description
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
224054061 716 predicted protein [Populus trichocarpa] 0.954 0.618 0.705 1e-176
225442114 724 PREDICTED: GTP pyrophosphokinase-like [V 0.948 0.607 0.705 1e-172
33637487 718 RSH2 [Nicotiana tabacum] 0.956 0.618 0.698 1e-170
15081594 721 RSH-like protein [Capsicum annuum] 0.935 0.601 0.677 1e-170
15822693 643 relA/spoT-like protein RSH2 [Nicotiana t 0.956 0.690 0.698 1e-169
224070802 737 predicted protein [Populus trichocarpa] 0.954 0.601 0.700 1e-167
356558920 715 PREDICTED: uncharacterized protein LOC10 0.926 0.601 0.687 1e-167
356519788 714 PREDICTED: uncharacterized protein LOC10 0.924 0.600 0.689 1e-167
449461673 733 PREDICTED: GTP pyrophosphokinase-like [C 0.967 0.612 0.658 1e-163
37196706 729 RelA-SpoT like protein PsRSH1 [Pisum sat 0.933 0.593 0.657 1e-159
>gi|224054061|ref|XP_002298089.1| predicted protein [Populus trichocarpa] gi|222845347|gb|EEE82894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 338/479 (70%), Positives = 387/479 (80%), Gaps = 36/479 (7%)

Query: 4   MAVPTIALYASPPSSVCSATH--QINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGL 61
           MAVPTIALYASPPSSVCS  +  QINAH  YDF+LNSRSS++ SS+A++  SQK  +GGL
Sbjct: 1   MAVPTIALYASPPSSVCSTPYPCQINAHANYDFELNSRSSSTASSSASS--SQKPIVGGL 58

Query: 62  SCLFSSSS-----------EMGSY-RSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPV 109
           S LFSS +           E+G + R +ELKELSSSF   Y+PSK C + SS+KRDQSPV
Sbjct: 59  SRLFSSPAVKHASFSGDREELGWHDRGDELKELSSSF--CYTPSK-CLAGSSIKRDQSPV 115

Query: 110 SVFQGPVSCSGNGSYSYSRSSPPIRTAREKADVNVNFHT-----FFKGSSGLFNGFVRNA 164
           SV QG VSCS         SSPP R ARE++  +V F +     F  G++GLFNGFVRNA
Sbjct: 116 SVLQGQVSCS---------SSPPTRIARERSGCDVGFQSSIHGSFRSGANGLFNGFVRNA 166

Query: 165 LGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLK 224
           LGSCVDYDS SF VHN    ++  SS+ ++DELTF+MED+ V+ N E YAKE L  AQ +
Sbjct: 167 LGSCVDYDSPSFEVHNNG--IDEDSSSVVVDELTFSMEDSCVDANYEPYAKELLFGAQSR 224

Query: 225 HKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDT 284
           H IF +DFVIKAF+EAE+AHRGQMRASGDPYL HCVETA+LLA IGANSTVVAAGLLHDT
Sbjct: 225 HTIFCDDFVIKAFHEAEKAHRGQMRASGDPYLQHCVETAVLLAIIGANSTVVAAGLLHDT 284

Query: 285 LDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMAD 344
           LDD+F+SYD+IF+TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMAD
Sbjct: 285 LDDSFISYDHIFKTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMAD 344

Query: 345 ARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKH 404
           ARAVLIKLADRLHNMMTLDALPL K+QRFAKET EIF PLANRLGIS+WK QLENLCFKH
Sbjct: 345 ARAVLIKLADRLHNMMTLDALPLVKQQRFAKETSEIFAPLANRLGISSWKEQLENLCFKH 404

Query: 405 LNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
           LNPDQH +LS++LV+ FDEAM+ SA EKLE+AL D+ IS+  L GRHKSLYS +CKMLK
Sbjct: 405 LNPDQHKDLSARLVDSFDEAMIASAKEKLEKALTDEAISY-DLSGRHKSLYSTYCKMLK 462

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442114|ref|XP_002273796.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|33637487|gb|AAQ23899.1| RSH2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|15081594|gb|AAK82651.1| RSH-like protein [Capsicum annuum] Back     alignment and taxonomy information
>gi|15822693|gb|AAL03950.1| relA/spoT-like protein RSH2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|224070802|ref|XP_002303242.1| predicted protein [Populus trichocarpa] gi|222840674|gb|EEE78221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558920|ref|XP_003547750.1| PREDICTED: uncharacterized protein LOC100787301 [Glycine max] Back     alignment and taxonomy information
>gi|356519788|ref|XP_003528551.1| PREDICTED: uncharacterized protein LOC100789399 [Glycine max] Back     alignment and taxonomy information
>gi|449461673|ref|XP_004148566.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] gi|449528710|ref|XP_004171346.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|37196706|dbj|BAC97801.1| RelA-SpoT like protein PsRSH1 [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
TAIR|locus:2088262 709 RSH2 "RELA/SPOT homolog 2" [Ar 0.586 0.383 0.786 2e-130
TAIR|locus:2014335 715 RSH3 "RELA/SPOT homolog 3" [Ar 0.911 0.591 0.594 1.9e-129
UNIPROTKB|Q3A9Z8 716 relA "GTP pyrophosphokinase" [ 0.484 0.314 0.434 2.2e-39
TIGR_CMR|CHY_2223 716 CHY_2223 "GTP pyrophosphokinas 0.484 0.314 0.434 2.2e-39
TIGR_CMR|DET_0005 728 DET_0005 "GTP pyrophosphokinas 0.495 0.315 0.435 6.4e-38
TIGR_CMR|GSU_2236 716 GSU_2236 "GTP pyrophosphokinas 0.480 0.311 0.404 7.4e-37
UNIPROTKB|P0AG24 702 spoT "guanosine 3'-diphosphate 0.476 0.314 0.415 1.4e-36
TIGR_CMR|CPS_4973 703 CPS_4973 "guanosine-3,5-bis(di 0.484 0.320 0.421 3.1e-36
TIGR_CMR|BA_4637 727 BA_4637 "GTP pyrophosphokinase 0.471 0.301 0.410 5.9e-36
TIGR_CMR|SO_0359 701 SO_0359 "guanosine-3,5-bis(dip 0.478 0.316 0.416 1.1e-35
TAIR|locus:2088262 RSH2 "RELA/SPOT homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1076 (383.8 bits), Expect = 2.0e-130, Sum P(2) = 2.0e-130
 Identities = 217/276 (78%), Positives = 239/276 (86%)

Query:   188 GSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQ 247
             GS + L+DELTF ME   V+  ++ YA++ L  AQL+HKIF ++ VIKAFYEAE+AHRGQ
Sbjct:   170 GSDSVLVDELTFPME---VD-TIKPYARDLLRRAQLRHKIFNDESVIKAFYEAEKAHRGQ 225

Query:   248 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 307
             MRAS DPYL HCVETAMLLA IGANSTVV AGLLHDT+DD+F+SYDYI R FGAGVADLV
Sbjct:   226 MRASRDPYLQHCVETAMLLANIGANSTVVVAGLLHDTIDDSFMSYDYILRNFGAGVADLV 285

Query:   308 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367
             EGVSKLSQLSKLARENNTA KTVEADRLHTMFLAMADARAVLIKLADRLHNM TL AL  
Sbjct:   286 EGVSKLSQLSKLARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMKTLYALSP 345

Query:   368 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 427
              K+QRFAKETLEIF PLANRLGISTWKVQLENLCFKHL P+QH E+S+ L + FDEAM+T
Sbjct:   346 VKQQRFAKETLEIFAPLANRLGISTWKVQLENLCFKHLYPNQHNEMSTMLEDSFDEAMIT 405

Query:   428 SAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
             SAIEKLEQALK   IS+ VLCGRHKSLYSI+ KMLK
Sbjct:   406 SAIEKLEQALKKAGISYHVLCGRHKSLYSIYSKMLK 441
GO:0003824 "catalytic activity" evidence=IEA
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015969 "guanosine tetraphosphate metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0008728 "GTP diphosphokinase activity" evidence=IGI
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0007165 "signal transduction" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2014335 RSH3 "RELA/SPOT homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0AG24 spoT "guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional]" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4973 CPS_4973 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0359 SO_0359 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.9324.1
hypothetical protein (716 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_1870028
hypothetical protein; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could [...] (202 aa)
•     • 0.609
eugene3.80240001
Predicted protein (139 aa)
 ••     0.433
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
•       0.431
eugene3.143650001
hypothetical protein (163 aa)
      • 0.431

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
COG0317 701 COG0317, SpoT, Guanosine polyphosphate pyrophospho 1e-76
TIGR00691 683 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp 4e-63
pfam13328156 pfam13328, HD_4, HD domain 3e-52
PRK11092 702 PRK11092, PRK11092, bifunctional (p)ppGpp syntheta 2e-51
PRK10872 743 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos 3e-26
pfam01966111 pfam01966, HD, HD domain 1e-08
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 2e-05
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 8e-05
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
 Score =  252 bits (647), Expect = 1e-76
 Identities = 104/254 (40%), Positives = 153/254 (60%), Gaps = 10/254 (3%)

Query: 213 YAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN 272
             +E L +         +  + KA+Y A +AH GQ R SG+PY+ H +E A +LA +  +
Sbjct: 8   ELEELLDSLATYLPP-VDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMD 66

Query: 273 STVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEA 332
              +AA LLHDT++D  ++ + I   FG  VA LVEGV+KL ++ +L+     + + ++A
Sbjct: 67  METLAAALLHDTIEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQA 121

Query: 333 DRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 391
           + L  M LAM  D R VLIKLADRLHN+ TL  L   KR+R A+ETL+I+ PLA+RLGI 
Sbjct: 122 ENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGIG 181

Query: 392 TWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEKLEQALKDKNISFLVLCG 449
             K +LE+L F++L+PDQ+  ++  L E     E  + + + +L + LK   I   V  G
Sbjct: 182 QIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVS-G 240

Query: 450 RHKSLYSIHCKMLK 463
           R K +YSI+ KM K
Sbjct: 241 RPKHIYSIYRKMQK 254

Length = 701
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>gnl|CDD|222047 pfam13328, HD_4, HD domain Back     alignment and domain information
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 464
PRK10872 743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 100.0
COG0317 701 SpoT Guanosine polyphosphate pyrophosphohydrolases 100.0
PRK11092 702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 100.0
KOG1157 543 consensus Predicted guanosine polyphosphate pyroph 100.0
TIGR00691 683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 100.0
PF13328153 HD_4: HD domain; PDB: 3NR1_B. 100.0
TIGR03276179 Phn-HD phosphonate degradation operons associated 98.34
smart00471124 HDc Metal dependent phosphohydrolases with conserv 95.79
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 94.98
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 94.42
PRK12703339 tRNA 2'-O-methylase; Reviewed 93.88
cd00077145 HDc Metal dependent phosphohydrolases with conserv 93.6
TIGR00295164 conserved hypothetical protein TIGR00295. This set 89.43
PRK10119231 putative hydrolase; Provisional 85.23
COG1418222 Predicted HD superfamily hydrolase [General functi 84.92
COG4341186 Predicted HD phosphohydrolase [General function pr 84.2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.4e-69  Score=589.06  Aligned_cols=246  Identities=27%  Similarity=0.433  Sum_probs=225.6

Q ss_pred             HHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHHHHHhhhccccccCCHHH
Q 012390          215 KEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY  294 (464)
Q Consensus       215 ~~Ll~~~~~~~~~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlEe  294 (464)
                      ++|+..+..+. ..+.+.|++|+.||.++|.|  |++|+|||.||++||.||+++++|.++|+||||||++|||.+|.|+
T Consensus        18 ~~l~~~~~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~~t~e~   94 (743)
T PRK10872         18 DKWIASLGITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDV   94 (743)
T ss_pred             HHHHHHHHhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCCCCHHH
Confidence            35565555555 67888999999999999999  8999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhHHhhcccccCCCHHHHHHH
Q 012390          295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRF  373 (464)
Q Consensus       295 I~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVVLIKLADRLhNMRtL~~lp~eKr~ri  373 (464)
                      |++.||++||.||+||||++.+....+.........|+|+||||||||+ |+||+||||||||||||||..++++||+++
T Consensus        95 i~~~FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~i  174 (743)
T PRK10872         95 LRESVGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLA  174 (743)
T ss_pred             HHHHHCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHHH
Confidence            9999999999999999999988642211001123458999999999997 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHCCCceeeeeeec
Q 012390          374 AKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRH  451 (464)
Q Consensus       374 A~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~--re~~I~~~~~~L~~~L~~~gI~~~~V~GR~  451 (464)
                      |+||++|||||||||||++||||||||||+||+|+.|+.|+++|.+++  |+.+|+++++.|++.|++.||+++ |+||+
T Consensus       175 A~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~i~~~-v~gR~  253 (743)
T PRK10872        175 AKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAEGVKAE-VYGRP  253 (743)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeec
Confidence            999999999999999999999999999999999999999999998875  899999999999999999999996 99999


Q ss_pred             cchhHHhHHhhcC
Q 012390          452 KSLYSIHCKMLKS  464 (464)
Q Consensus       452 KhiYSIy~KM~kK  464 (464)
                      ||+||||+||++|
T Consensus       254 K~~ySI~~Km~~k  266 (743)
T PRK10872        254 KHIYSIWRKMQKK  266 (743)
T ss_pred             CCHHHHHHHHHHc
Confidence            9999999999986

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>PF13328 HD_4: HD domain; PDB: 3NR1_B Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>COG4341 Predicted HD phosphohydrolase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
1vj7_A 393 Crystal Structure Of The Bifunctional Catalytic Fra 1e-37
3nr1_A178 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 1e-09
3nqw_A179 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 5e-08
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 Back     alignment and structure 
Iteration: 1

 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/233 (39%), Positives = 140/233 (60%), Gaps = 10/233 (4%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
           FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  ++
Sbjct: 27  FVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDIT 86
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
            D I   FG  V D+V+GV+KL ++   + E   A           M +AM+ D R +L+
Sbjct: 87  LDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENH------RKMLMAMSKDIRVILV 140
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
           KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  + 
Sbjct: 141 KLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEF 200
Query: 411 TELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461
            ++S  + E     EA+V   + K++    ++ + F  + GR K +YSI+ KM
Sbjct: 201 YKISHMMNEKRREREALVDDIVTKIKSYTTEQGL-FGDVYGRPKHIYSIYRKM 252
>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 Back     alignment and structure
>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
1vj7_A 393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 3e-87
3nr1_A178 HD domain-containing protein 3; stringent response 3e-59
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 1e-55
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
3l9d_A 255 SMU.1046C, putative GTP pyrophosphokinase; transfe 4e-07
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 Back     alignment and structure
 Score =  271 bits (695), Expect = 3e-87
 Identities = 91/237 (38%), Positives = 140/237 (59%), Gaps = 10/237 (4%)

Query: 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAF 289
             FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  
Sbjct: 25  AAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTD 84

Query: 290 LSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAV 348
           ++ D I   FG  V D+V+GV+KL ++   + E         A+    M +AM+ D R +
Sbjct: 85  ITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHE------EQLAENHRKMLMAMSKDIRVI 138

Query: 349 LIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPD 408
           L+KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  
Sbjct: 139 LVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNET 198

Query: 409 QHTELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
           +  ++S  + E     EA+V   + K++    ++ +   V  GR K +YSI+ KM  
Sbjct: 199 EFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVY-GRPKHIYSIYRKMRD 254
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
1vj7_A 393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 100.0
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 100.0
3nr1_A178 HD domain-containing protein 3; stringent response 100.0
3l9d_A 255 SMU.1046C, putative GTP pyrophosphokinase; transfe 99.12
2be3_A 226 GTP pyrophosphokinase; structural genomics, PSI, p 95.78
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 94.92
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 94.85
3dto_A223 BH2835 protein; all alpha-helical protein, structu 94.42
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 94.24
2qgs_A225 Protein Se1688; alpha-helical protein, structural 94.2
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 93.98
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 91.95
2ibn_A250 Inositol oxygenase; reductase, DIIRON, structural 85.42
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Back     alignment and structure
Probab=100.00  E-value=1.9e-68  Score=550.29  Aligned_cols=244  Identities=38%  Similarity=0.533  Sum_probs=217.2

Q ss_pred             HHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHHHHHhhhccccccCCHH
Q 012390          214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD  293 (464)
Q Consensus       214 ~~~Ll~~~~~~~~~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlE  293 (464)
                      +++|+..+..+.+..+.+.+.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||.+|.+
T Consensus         9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e   88 (393)
T 1vj7_A            9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD   88 (393)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence            35788888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhHHhhcccccCCCHHHHHH
Q 012390          294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR  372 (464)
Q Consensus       294 eI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVVLIKLADRLhNMRtL~~lp~eKr~r  372 (464)
                      +|++.||++||.||+||||+..++...+      ...|+|++|||||+|+ |+||++|||||||||||++..+++++|++
T Consensus        89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~~------~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~  162 (393)
T 1vj7_A           89 NIEFDFGKDVRDIVDGVTKLGKVEYKSH------EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER  162 (393)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred             HHHHHhCHHHHHHHHHHHhcccCCcccH------HHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence            9999999999999999999998864221      2357899999999997 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHCCCceeeeeee
Q 012390          373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR  450 (464)
Q Consensus       373 iA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~--re~~I~~~~~~L~~~L~~~gI~~~~V~GR  450 (464)
                      +|+||++|||||||||||++||||||||||+||+|+.|+.|.++|.+.+  ++.+|+++++.|++.|.+.||.++ |+||
T Consensus       163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R  241 (393)
T 1vj7_A          163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR  241 (393)
T ss_dssp             HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred             HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence            9999999999999999999999999999999999999999999999876  789999999999999999999996 9999


Q ss_pred             ccchhHHhHHhhcC
Q 012390          451 HKSLYSIHCKMLKS  464 (464)
Q Consensus       451 ~KhiYSIy~KM~kK  464 (464)
                      +||+||||+||++|
T Consensus       242 ~K~~~Si~~Km~rk  255 (393)
T 1vj7_A          242 PKHIYSIYRKMRDK  255 (393)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             eCChHHHHHHHHHh
Confidence            99999999999875
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 464
d1vj7a1192 a.211.1.1 (A:5-196) Stringent response-like protei 1e-45
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

 Score =  154 bits (391), Expect = 1e-45
 Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 7/194 (3%)

Query: 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANS 273
            +E +A A          FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++
Sbjct: 5   GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDA 64

Query: 274 TVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333
             VA G LHD ++D  ++ D I   FG  V D+V+GV+KL       +    + +   A+
Sbjct: 65  VTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKL------GKVEYKSHEEQLAE 118

Query: 334 RLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIST 392
               M +AM+ D R +L+KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS 
Sbjct: 119 NHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISR 178

Query: 393 WKVQLENLCFKHLN 406
            K +LE+L F++LN
Sbjct: 179 IKWELEDLAFRYLN 192

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
d1vj7a1192 Stringent response-like protein RelA N-terminal do 100.0
d1vj7a2 175 Stringent response-like protein RelA domain 2 {Str 98.64
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 93.76
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 93.49
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 93.32
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 92.6
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 91.44
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 90.82
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=6.4e-56  Score=414.03  Aligned_cols=187  Identities=42%  Similarity=0.608  Sum_probs=163.4

Q ss_pred             HHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHHHHHhhhccccccCCHH
Q 012390          214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD  293 (464)
Q Consensus       214 ~~~Ll~~~~~~~~~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlE  293 (464)
                      .++++...+.+.+..|.++|++|++||.++|.||+|++|+||+.||++||.+|+++++|+++++||||||++|||.+|.+
T Consensus         5 ~e~~l~~~~~yl~~~d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~d~~~i~AalLhd~~edt~~t~e   84 (192)
T d1vj7a1           5 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD   84 (192)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcccChHHHHHHHHHHHHHHHHhcCChHHhhhhheechhhhchhHHH
Confidence            57888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhHHhhcccccCCCHHHHHH
Q 012390          294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR  372 (464)
Q Consensus       294 eI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVVLIKLADRLhNMRtL~~lp~eKr~r  372 (464)
                      +|+++||++|+++|++|||+..++...+      ...+++++|||+++|. |+||++|||||||||||++..++++++++
T Consensus        85 ~I~~~FG~~Va~lV~~ltk~~~~~~~~~------~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~~~~~~k~~~  158 (192)
T d1vj7a1          85 NIEFDFGKDVRDIVDGVTKLGKVEYKSH------EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER  158 (192)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred             HHHHhcchhHHHHHHHHHhhcccccccc------chHHHHHHHHHHHhhccCceeehhHHHHHHhhccccccCChHHHHH
Confidence            9999999999999999999988775332      2356789999999997 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcC
Q 012390          373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLN  406 (464)
Q Consensus       373 iA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~  406 (464)
                      +|+||+++|+|||+|||+|++|||||||||||||
T Consensus       159 ~a~Et~~iyaplA~rLG~~~ik~eLEdl~f~~L~  192 (192)
T d1vj7a1         159 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN  192 (192)
T ss_dssp             HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999986
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure