Citrus Sinensis ID: 012406

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
MDTEEAWTPEAEAAAVKEPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLNPSGSKLQKVPVNKMKCFSNVFENLLGISWQPTFLREVIVLLTFINKFLCTPSKQGASLWYGWIYPIIAQSMCKEERGRNGA
cccccccccHHHHcccccccccccccHHHHHHHHccccEEccHHHHHHHHHHcccccccEEEEEEccccEEEEEEEEcccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHEEEEEEEccccccEEEEEEEccEEEEcccccccccccEEEEccccccHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEccccccHHHHHHHHccHHHHHcccccccccccccccccEEEEEEEEccccccccccEEEEEcccccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEEEEcccccEEEEcccccccccHHHHHHHHccccc
ccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEEEEEHHHccEEEEEEccccccHHHHHHHHccccccccccHHHHHccccccccccHHHHHHHccEEEEEEEccccccEEEEEEEccccEEEEEEEccccEEEEEEEccccccHHHHcccccHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEEEccccccHHHHHHHHHHHcHHHHHHHccEEccccccHHccccEEEEEEEcccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccEEEcccccccEEEEcHHHHHHHHHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccc
mdteeawtpeaeaaavkeppkihrleESVVNRIAAGEVIQRPVSAVKELVENsldadatsINVVVKDgglkliqvsddghgiryedlpilcerhttsklskyedlqsiksmgfrGEALASMTYVGHVTVTTITkghlhgyrvsyrdgvmesepkacaaVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHhtnvsfscrkhgaaradvhsiatssrldSIRTVYGVSVASNLVQLEAseyndsssfvfkmdgyvsnsnyvAKKTTMVLFVNdrlvecaplKRAVEIVYAatfpkaskpfiymsivlppehvdvnvhptKREVSLLNQELIVEKIQSAVELKLRqsndsrtykeqtvesspsspynpskdlhlnpsgsklqkvpvnkmkCFSNVFENLlgiswqptFLREVIVLLTFINKflctpskqgaslwygWIYPIIAQSmckeergrnga
mdteeawtpeaeaaavkeppkihrLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKliqvsddghgirYEDLPILCERhttsklskyedLQSIKSMGFRGEALASMTYVGHVTVttitkghlhGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHsiatssrldsiRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELklrqsndsrtykeqtvesspsspynpsKDLHLNPSGSKLQKVPVNKMKCFSNVFENLLGISWQPTFLREVIVLLTFINKFLCTPSKQGASLWYGWIYPIIAQSMCKeergrnga
MDteeawtpeaeaaavkeppkIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLNPSGSKLQKVPVNKMKCFSNVFENLLGISWQPTFLREVIVLLTFINKFLCTPSKQGASLWYGWIYPIIAQSMCKEERGRNGA
***************************SVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV********************************************PVNKMKCFSNVFENLLGISWQPTFLREVIVLLTFINKFLCTPSKQGASLWYGWIYPIIAQSM**********
***********************RLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR************************************************************************FINKFLCTPSKQGASLWYGWIYPIIAQSMC*********
****************KEPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQS***********************DLHLNPSGSKLQKVPVNKMKCFSNVFENLLGISWQPTFLREVIVLLTFINKFLCTPSKQGASLWYGWIYPIIAQSMC*********
********************KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQS*****************************************************GISWQPTFLREVIVLLTFINKFLCTPSKQGASLWYGWIYPIIAQSMCKEERG****
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MDTEEAWTPEAEAAAVKEPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLNPSGSKLQKVPVNKMKCFSNVFENLLGISWQPTFLREVIVLLTFINKFLCTPSKQGASLWYGWIYPIIAQSMCKEERGRNGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query464 2.2.26 [Sep-21-2011]
P40692 756 DNA mismatch repair prote yes no 0.75 0.460 0.517 1e-106
Q9JK91 760 DNA mismatch repair prote yes no 0.75 0.457 0.514 1e-105
P97679 757 DNA mismatch repair prote yes no 0.75 0.459 0.505 1e-103
P38920 769 DNA mismatch repair prote yes no 0.765 0.461 0.468 7e-91
Q54KD8 884 DNA mismatch repair prote yes no 0.745 0.391 0.426 5e-86
Q9P7W6 684 Putative MutL protein hom yes no 0.762 0.517 0.425 3e-75
B8CX97 644 DNA mismatch repair prote yes no 0.709 0.510 0.384 6e-60
B9DPC0 646 DNA mismatch repair prote yes no 0.691 0.496 0.379 3e-55
B2TIB8 672 DNA mismatch repair prote yes no 0.698 0.482 0.369 2e-54
Q1WT16 659 DNA mismatch repair prote yes no 0.702 0.494 0.376 4e-54
>sp|P40692|MLH1_HUMAN DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1 Back     alignment and function desciption
 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/352 (51%), Positives = 256/352 (72%), Gaps = 4/352 (1%)

Query: 22  IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
           I RL+E+VVNRIAAGEVIQRP +A+KE++EN LDA +TSI V+VK+GGLKLIQ+ D+G G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 82  IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
           IR EDL I+CER TTSKL  +EDL SI + GFRGEALAS+++V HVT+TT T      YR
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
            SY DG +++ PK CA  +GTQI VE+LFYN+  RRK L+N S++Y KI++++ R ++H+
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187

Query: 202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
             +SFS +K G   ADV ++  +S +D+IR+++G +V+  L+++      +  +  FKM+
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGC----EDKTLAFKMN 243

Query: 262 GYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHV 321
           GY+SN+NY  KK   +LF+N RLVE   L++A+E VYAA  PK + PF+Y+S+ + P++V
Sbjct: 244 GYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 303

Query: 322 DVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSP 373
           DVNVHPTK EV  L++E I+E++Q  +E KL  SN SR Y  QT+    + P
Sbjct: 304 DVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGP 355
Heterodimerizes with PMS2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of PMS2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (MLH1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with MLH3 to form MutL gamma which plays a role in meiosis.
Homo sapiens (taxid: 9606)
>sp|Q9JK91|MLH1_MOUSE DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=2 SV=2 Back     alignment and function description
>sp|P97679|MLH1_RAT DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2 SV=1 Back     alignment and function description
>sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2 Back     alignment and function description
>sp|Q54KD8|MLH1_DICDI DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum GN=mlh1 PE=3 SV=1 Back     alignment and function description
>sp|Q9P7W6|MLH1_SCHPO Putative MutL protein homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlh1 PE=2 SV=1 Back     alignment and function description
>sp|B8CX97|MUTL_HALOH DNA mismatch repair protein MutL OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|B9DPC0|MUTL_STACT DNA mismatch repair protein MutL OS=Staphylococcus carnosus (strain TM300) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|B2TIB8|MUTL_CLOBB DNA mismatch repair protein MutL OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|Q1WT16|MUTL_LACS1 DNA mismatch repair protein MutL OS=Lactobacillus salivarius (strain UCC118) GN=mutL PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
255561542 735 DNA mismatch repair protein mlh1, putati 0.812 0.512 0.830 0.0
224146324 747 predicted protein [Populus trichocarpa] 0.816 0.507 0.828 0.0
449522942 738 PREDICTED: DNA mismatch repair protein M 0.834 0.524 0.802 1e-179
449441546 738 PREDICTED: DNA mismatch repair protein M 0.834 0.524 0.802 1e-179
359489136381 PREDICTED: DNA mismatch repair protein M 0.762 0.929 0.845 1e-178
297744800366 unnamed protein product [Vitis vinifera] 0.762 0.967 0.845 1e-177
297813357 727 hypothetical protein ARALYDRAFT_911184 [ 0.844 0.539 0.772 1e-175
30680985 737 DNA mismatch repair protein MLH1 [Arabid 0.849 0.534 0.763 1e-174
13430732 727 putative MLH1 protein [Arabidopsis thali 0.844 0.539 0.767 1e-174
357455563 764 DNA mismatch repair protein Mlh1 [Medica 0.821 0.498 0.776 1e-174
>gi|255561542|ref|XP_002521781.1| DNA mismatch repair protein mlh1, putative [Ricinus communis] gi|223538994|gb|EEF40591.1| DNA mismatch repair protein mlh1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/383 (83%), Positives = 348/383 (90%), Gaps = 6/383 (1%)

Query: 17  KEPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVS 76
           KEPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDA +TSINVVVKDGGLKLIQVS
Sbjct: 18  KEPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAHSTSINVVVKDGGLKLIQVS 77

Query: 77  DDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGH 136
           DDGHGIRYEDLPILCERHTTSKLS YEDLQSIKSMGFRGEALASMTYV HVTVTTIT+G 
Sbjct: 78  DDGHGIRYEDLPILCERHTTSKLSTYEDLQSIKSMGFRGEALASMTYVAHVTVTTITEGQ 137

Query: 137 LHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSR 196
           LHGYRVSYRDGVME EPKACAAVKGTQIMVENLFYNMIARRKTLQNS+DDY+K+VDLLSR
Sbjct: 138 LHGYRVSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQNSADDYSKVVDLLSR 197

Query: 197 MAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSF 256
            +IHHTNVSFSCRKHGAARAD+HS+ATSSRLDSIRTVYG S A NL+++EAS+   +   
Sbjct: 198 FSIHHTNVSFSCRKHGAARADIHSVATSSRLDSIRTVYGASAARNLMKIEASDEASN--- 254

Query: 257 VFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVL 316
            F M+G++SNSNYVAKKTTMVLF+NDRLVEC  LKRA+EIVY AT PKASKPF+YMS+VL
Sbjct: 255 -FDMNGFISNSNYVAKKTTMVLFINDRLVECTTLKRALEIVYTATLPKASKPFVYMSVVL 313

Query: 317 PPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNP 376
           PPEHVDVNVHPTKREVSLLNQE IVEKIQ AVE KLR SN++++++EQT++ SPS P   
Sbjct: 314 PPEHVDVNVHPTKREVSLLNQETIVEKIQLAVESKLRSSNEAKSFQEQTIDPSPSCPLGT 373

Query: 377 SKDLHLNPS--GSKLQKVPVNKM 397
            KDL ++PS  GSK QKVPVNKM
Sbjct: 374 GKDLKVDPSSNGSKAQKVPVNKM 396

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146324|ref|XP_002325965.1| predicted protein [Populus trichocarpa] gi|222862840|gb|EEF00347.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449522942|ref|XP_004168484.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441546|ref|XP_004138543.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359489136|ref|XP_003633884.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744800|emb|CBI38068.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297813357|ref|XP_002874562.1| hypothetical protein ARALYDRAFT_911184 [Arabidopsis lyrata subsp. lyrata] gi|297320399|gb|EFH50821.1| hypothetical protein ARALYDRAFT_911184 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30680985|ref|NP_567345.2| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] gi|3893081|emb|CAA10163.1| MLH1 protein [Arabidopsis thaliana] gi|7267557|emb|CAB78038.1| MLH1 protein [Arabidopsis thaliana] gi|332657326|gb|AEE82726.1| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|13430732|gb|AAK25988.1|AF360278_1 putative MLH1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357455563|ref|XP_003598062.1| DNA mismatch repair protein Mlh1 [Medicago truncatula] gi|355487110|gb|AES68313.1| DNA mismatch repair protein Mlh1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
TAIR|locus:2122388 737 MLH1 "AT4G09140" [Arabidopsis 0.808 0.508 0.783 1.1e-153
UNIPROTKB|Q5JN46 724 P0401G10.10 "Os01g0958900 prot 0.808 0.517 0.728 1.7e-146
UNIPROTKB|E1BQE0 757 MLH1 "Uncharacterized protein" 0.734 0.450 0.539 9.7e-99
UNIPROTKB|P40692 756 MLH1 "DNA mismatch repair prot 0.75 0.460 0.517 1.2e-95
UNIPROTKB|F1MPG0 758 MLH1 "Uncharacterized protein" 0.752 0.460 0.516 2.6e-95
UNIPROTKB|H0Y818 679 MLH1 "DNA mismatch repair prot 0.745 0.509 0.517 3.3e-95
UNIPROTKB|A8HM54 1007 MLH1 "Mismatch repair protein" 0.732 0.337 0.534 8.7e-95
MGI|MGI:101938 760 Mlh1 "mutL homolog 1 (E. coli) 0.75 0.457 0.514 8.7e-95
UNIPROTKB|E2RBM6 757 MLH1 "Uncharacterized protein" 0.75 0.459 0.514 1.1e-94
ZFIN|ZDB-GENE-040426-1600 725 mlh1 "mutL homolog 1, colon ca 0.734 0.470 0.521 3e-94
TAIR|locus:2122388 MLH1 "AT4G09140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
 Identities = 296/378 (78%), Positives = 334/378 (88%)

Query:    22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
             I RLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD++SI+VVVKDGGLKLIQVSDDGHG
Sbjct:    29 IQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLKLIQVSDDGHG 88

Query:    82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
             IR EDLPILCERHTTSKL+K+EDL S+ SMGFRGEALASMTYV HVTVTTITKG +HGYR
Sbjct:    89 IRREDLPILCERHTTSKLTKFEDLFSLSSMGFRGEALASMTYVAHVTVTTITKGQIHGYR 148

Query:   142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
             VSYRDGVME EPKACAAVKGTQIMVENLFYNMIARRKTLQNS+DDY KIVDLLSRMAIH+
Sbjct:   149 VSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQNSADDYGKIVDLLSRMAIHY 208

Query:   202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
              NVSFSCRKHGA +ADVHS+ + SRLDSIR+VYGVSVA NL+++E S   DSS   F M+
Sbjct:   209 NNVSFSCRKHGAVKADVHSVVSPSRLDSIRSVYGVSVAKNLMKVEVSSC-DSSGCTFDME 267

Query:   262 GYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHV 321
             G++SNSNYVAKKT +VLF+NDRLVEC+ LKRA+EIVYAAT PKASKPF+YMSI LP EHV
Sbjct:   268 GFISNSNYVAKKTILVLFINDRLVECSALKRAIEIVYAATLPKASKPFVYMSINLPREHV 327

Query:   322 DVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLH 381
             D+N+HPTK+EVSLLNQE+I+E IQS VE+KLR +ND+RT++EQ VE   S+  +   D  
Sbjct:   328 DINIHPTKKEVSLLNQEIIIEMIQSEVEVKLRNANDTRTFQEQKVEYIQSTLTSQKSDSP 387

Query:   382 LN--PSGSKLQKVPVNKM 397
             ++  PSG K QKVPVNKM
Sbjct:   388 VSQKPSGQKTQKVPVNKM 405
GO:0000795 "synaptonemal complex" evidence=IBA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0005712 "chiasma" evidence=IBA
GO:0006200 "ATP catabolic process" evidence=IBA
GO:0006298 "mismatch repair" evidence=ISS;IBA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA;IBA
GO:0016887 "ATPase activity" evidence=IBA
GO:0030983 "mismatched DNA binding" evidence=IEA;IBA
GO:0032389 "MutLalpha complex" evidence=IBA
GO:0032390 "MutLbeta complex" evidence=IBA
GO:0030674 "protein binding, bridging" evidence=ISS
GO:0006312 "mitotic recombination" evidence=RCA;IMP
GO:0009555 "pollen development" evidence=RCA;IMP
GO:0009845 "seed germination" evidence=RCA;IMP
GO:0010154 "fruit development" evidence=IMP
GO:0048316 "seed development" evidence=IMP
GO:0000790 "nuclear chromatin" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006302 "double-strand break repair" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
UNIPROTKB|Q5JN46 P0401G10.10 "Os01g0958900 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQE0 MLH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P40692 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPG0 MLH1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y818 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A8HM54 MLH1 "Mismatch repair protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
MGI|MGI:101938 Mlh1 "mutL homolog 1 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBM6 MLH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1600 mlh1 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_603241.1
annotation not avaliable (727 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.3__2059__AT3G18524.1
annotation not avaliable (937 aa)
• ••••• 0.987
fgenesh2_kg.7__2572__AT4G17380.1
annotation not avaliable (792 aa)
• • ••• 0.939
scaffold_604079.1
annotation not avaliable (1326 aa)
• ••••• 0.905
fgenesh2_kg.7__1706__AT4G25540.1
At4g25540-like protein (1078 aa)
• • ••• 0.900
fgenesh2_kg.3__2273__AT3G20475.1
annotation not avaliable (807 aa)
• •  •• 0.883
fgenesh2_kg.6__3453__AT4G02460.1
annotation not avaliable (923 aa)
   •••••0.791
fgenesh2_kg.3__2659__AT3G24495.1
annotation not avaliable (1119 aa)
• • ••• 0.774
fgenesh2_kg.8__2404__AT5G63960.1
annotation not avaliable (1092 aa)
   •• • 0.774
fgenesh2_kg.6__2035__AT5G20040.1
annotation not avaliable (463 aa)
•     • 0.715
Al_scaffold_0009_170
annotation not avaliable (495 aa)
•     • 0.704

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
COG0323 638 COG0323, MutL, DNA mismatch repair enzyme (predict 1e-123
TIGR00585312 TIGR00585, mutl, DNA mismatch repair protein MutL 1e-112
PRK00095 617 PRK00095, mutL, DNA mismatch repair protein; Revie 1e-101
cd03483127 cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transdu 2e-60
cd00782122 cd00782, MutL_Trans, MutL_Trans: transducer domain 1e-33
pfam01119119 pfam01119, DNA_mis_repair, DNA mismatch repair pro 4e-31
cd00329107 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer 3e-16
cd03484142 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_ 8e-15
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 1e-12
cd03485132 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_ 5e-09
cd03482123 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transdu 3e-07
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 3e-07
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 3e-06
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  371 bits (955), Expect = e-123
 Identities = 146/384 (38%), Positives = 207/384 (53%), Gaps = 11/384 (2%)

Query: 20  PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDG 79
           PKI +L   +VN+IAAGEVI+RP S VKELVENSLDA AT I++ V+ GGLKLI+V D+G
Sbjct: 2   PKIRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNG 61

Query: 80  HGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHG 139
            GI  EDLP+   RH TSK++  EDL  I+++GFRGEALAS+  V  +T+T+ T     G
Sbjct: 62  SGIDKEDLPLALLRHATSKIASLEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEG 121

Query: 140 YRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAI 199
            ++    G ME   K  A   GT + V +LFYN  ARRK L++   ++  I +L++R A+
Sbjct: 122 TQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRKFLKSEKTEFGHITELINRYAL 181

Query: 200 HHTNVSFSCRKHGAARADVHSIATSSRLD-SIRTVYGVSVASNLVQLEASEYNDSSSFVF 258
            H ++SFS   +G  R ++  +  +  L+  I  VYG     N + +E    N+      
Sbjct: 182 AHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIE----NEHEDLRL 237

Query: 259 KMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLP 317
              GYVS   +  A +    LFVN R V    L  A+   YA   P+   P   + + L 
Sbjct: 238 S--GYVSLPEFTRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELD 295

Query: 318 PEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSR--TYKEQTVESSPSSPYN 375
           PE VDVNVHP K+EV   ++ L+ + I  A++  L Q       + +     S P   + 
Sbjct: 296 PELVDVNVHPAKKEVRFSDERLVHDLIYEAIKEALAQQGLIPPASVEAPKSASQPLPAFQ 355

Query: 376 PSKDLHLNP-SGSKLQKVPVNKMK 398
               L  +    SK+ K   +K  
Sbjct: 356 EPSPLPESRIQKSKVAKSGSSKSD 379

Length = 638
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL Back     alignment and domain information
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed Back     alignment and domain information
>gnl|CDD|239565 cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1) Back     alignment and domain information
>gnl|CDD|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family Back     alignment and domain information
>gnl|CDD|201604 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal domain Back     alignment and domain information
>gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>gnl|CDD|239566 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) Back     alignment and domain information
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|239567 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 Back     alignment and domain information
>gnl|CDD|239564 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 464
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 100.0
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 100.0
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 100.0
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 100.0
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 100.0
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 100.0
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 99.97
cd03483127 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain 99.96
PF01119119 DNA_mis_repair: DNA mismatch repair protein, C-ter 99.96
cd03482123 MutL_Trans_MutL MutL_Trans_MutL: transducer domain 99.95
cd03485132 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: tran 99.95
cd03486141 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain 99.95
cd00782122 MutL_Trans MutL_Trans: transducer domain, having a 99.94
cd03484142 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: tran 99.93
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 99.93
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.92
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 99.92
PRK05644 638 gyrB DNA gyrase subunit B; Validated 99.91
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 99.91
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 99.91
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 99.88
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 99.87
PRK05218 613 heat shock protein 90; Provisional 99.86
PRK04184535 DNA topoisomerase VI subunit B; Validated 99.8
cd00329107 TopoII_MutL_Trans MutL_Trans: transducer domain, h 99.74
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 99.67
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.6
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 99.56
PRK14083 601 HSP90 family protein; Provisional 99.52
COG0187 635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 99.52
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.34
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 99.33
PTZ00130 814 heat shock protein 90; Provisional 99.33
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 99.26
PTZ00109 903 DNA gyrase subunit b; Provisional 99.24
PLN03237 1465 DNA topoisomerase 2; Provisional 99.15
PLN03128 1135 DNA topoisomerase 2; Provisional 99.12
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 99.11
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.65
KOG0019 656 consensus Molecular chaperone (HSP90 family) [Post 98.65
KOG0020 785 consensus Endoplasmic reticulum glucose-regulated 98.45
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 98.34
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 98.26
COG3290537 CitA Signal transduction histidine kinase regulati 98.24
PRK11006430 phoR phosphate regulon sensor protein; Provisional 98.17
PRK10364457 sensor protein ZraS; Provisional 98.16
PRK10604433 sensor protein RstB; Provisional 98.16
COG4191603 Signal transduction histidine kinase regulating C4 98.13
PRK09303380 adaptive-response sensory kinase; Validated 98.08
PRK10549466 signal transduction histidine-protein kinase BaeS; 98.06
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 98.0
PRK09470461 cpxA two-component sensor protein; Provisional 97.97
PRK11100475 sensory histidine kinase CreC; Provisional 97.96
PRK10815485 sensor protein PhoQ; Provisional 97.93
PRK11086542 sensory histidine kinase DcuS; Provisional 97.91
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.89
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 97.87
PRK09467435 envZ osmolarity sensor protein; Provisional 97.87
PRK15347921 two component system sensor kinase SsrA; Provision 97.86
PRK10755356 sensor protein BasS/PmrB; Provisional 97.84
PRK11091779 aerobic respiration control sensor protein ArcB; P 97.77
PRK13837828 two-component VirA-like sensor kinase; Provisional 97.73
PRK10337449 sensor protein QseC; Provisional 97.73
COG0642336 BaeS Signal transduction histidine kinase [Signal 97.68
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.68
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 97.66
PRK11360607 sensory histidine kinase AtoS; Provisional 97.64
PRK10618894 phosphotransfer intermediate protein in two-compon 97.61
PRK10490895 sensor protein KdpD; Provisional 97.57
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 97.56
PRK13557540 histidine kinase; Provisional 97.55
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 97.5
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 97.49
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 97.49
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 97.47
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 97.45
PRK09835482 sensor kinase CusS; Provisional 97.37
PRK10841924 hybrid sensory kinase in two-component regulatory 97.35
PRK099591197 hybrid sensory histidine kinase in two-component r 97.33
COG5002459 VicK Signal transduction histidine kinase [Signal 97.12
PRK11644495 sensory histidine kinase UhpB; Provisional 97.11
PRK10547670 chemotaxis protein CheA; Provisional 97.03
PRK04069161 serine-protein kinase RsbW; Provisional 96.99
PRK03660146 anti-sigma F factor; Provisional 96.86
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 96.84
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 96.72
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 96.61
PRK13560807 hypothetical protein; Provisional 96.6
COG4192673 Signal transduction histidine kinase regulating ph 96.59
COG0643716 CheA Chemotaxis protein histidine kinase and relat 96.53
COG3851497 UhpB Signal transduction histidine kinase, glucose 96.42
COG3852363 NtrB Signal transduction histidine kinase, nitroge 96.36
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 96.32
COG3850574 NarQ Signal transduction histidine kinase, nitrate 96.13
COG5000712 NtrY Signal transduction histidine kinase involved 96.1
COG2972456 Predicted signal transduction protein with a C-ter 95.64
COG4585365 Signal transduction histidine kinase [Signal trans 95.38
KOG0355 842 consensus DNA topoisomerase type II [Chromatin str 94.92
COG4251750 Bacteriophytochrome (light-regulated signal transd 94.82
COG3920221 Signal transduction histidine kinase [Signal trans 94.32
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 93.95
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 93.51
PRK13559361 hypothetical protein; Provisional 93.07
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 91.58
COG3275557 LytS Putative regulator of cell autolysis [Signal 89.84
COG4564459 Signal transduction histidine kinase [Signal trans 83.08
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=7.8e-107  Score=838.51  Aligned_cols=388  Identities=54%  Similarity=0.818  Sum_probs=366.2

Q ss_pred             CCccccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccC
Q 012406           18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS   97 (464)
Q Consensus        18 ~~~~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TS   97 (464)
                      .++.||+||++|+|||+|||||.+|.+||||||||||||+||.|.|.+++||++++||+|||.||.++||+++|+||+||
T Consensus         4 ~~~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS   83 (694)
T KOG1979|consen    4 VPRKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS   83 (694)
T ss_pred             cchhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence            35589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEEcCceecccccccCCCceEEEEEeeeccchhhh
Q 012406           98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARR  177 (464)
Q Consensus        98 K~~~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRr  177 (464)
                      |+++||||.+++||||||||||||+|||+|+|+||++++.|||++.|.||++...|+||++++||+|+|+|||||+|+||
T Consensus        84 KL~kFEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rr  163 (694)
T KOG1979|consen   84 KLTKFEDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRR  163 (694)
T ss_pred             hcchhHHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEcCCCCCHHHHHHHHhChhhhcccE-Eee-eeccCCCCC
Q 012406          178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLV-QLE-ASEYNDSSS  255 (464)
Q Consensus       178 k~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~-~i~-~~~~~~~~~  255 (464)
                      ++|++.++|+.+|.++|.+||+|+|+|+|+|++.|+....+++.+..+..|+|+.+||.+++++|+ ++. .++  ..  
T Consensus       164 kal~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~--~~--  239 (694)
T KOG1979|consen  164 KALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDS--KL--  239 (694)
T ss_pred             HHhcCcHHHHHHHHHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccC--ce--
Confidence            999999999999999999999999999999999999999999999999999999999999999998 665 333  33  


Q ss_pred             ceeEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecC
Q 012406          256 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLL  335 (464)
Q Consensus       256 ~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~  335 (464)
                      ..|+++|||++++|..||...++|||||+|+|..|+++|+.+|+.|||++.+||+||+|.++|++|||||||||+||+|+
T Consensus       240 l~f~~~g~Isn~n~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL  319 (694)
T KOG1979|consen  240 LKFSAEGYISNANYSAKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFL  319 (694)
T ss_pred             eEEeccceEechhhhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEee
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHhcCCCCCccccccccCCCCCCCCCCCCC--CCCCCCCCCCCCCCCceeeccCccccccC
Q 012406          336 NQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDL--HLNPSGSKLQKVPVNKMKCFSNVFENLLG  409 (464)
Q Consensus       336 ~e~~Ii~~I~~~l~~~L~~~~~sr~f~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vr~d~~~~~~~~  409 (464)
                      ++++|++.||+.|+..|.+.|++|+|..|.++|+........+..  ..++.+.++.|+|+|+|||||+++|+|+.
T Consensus       320 ~qEeIie~I~~~ie~~L~~~d~er~~~~q~~iP~~~~~~~er~~~~~~~~~s~~ks~k~~~~~mVRtDsse~ki~~  395 (694)
T KOG1979|consen  320 NQEEIIERICQQIEERLSALDTERTFLKQVMIPGPSTLKSERNKPSLKQSPSAQKSDKRYENKMVRTDSSERKIDS  395 (694)
T ss_pred             cHHHHHHHHHHHHHHHHhccCcccchhhhhcccCCccccccccCccccccccccccchhcccceeeccccccchhh
Confidence            999999999999999999999999999999999876554322211  11455566678999999999999999987

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1) Back     alignment and domain information
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL Back     alignment and domain information
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL Back     alignment and domain information
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 Back     alignment and domain information
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3) Back     alignment and domain information
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family Back     alignment and domain information
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
3na3_A348 Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens 1e-107
1b62_A355 Mutl Complexed With Adp Length = 355 9e-43
1bkn_A352 Crystal Structure Of An N-Terminal 40kd Fragment Of 1e-42
1b63_A333 Mutl Complexed With Adpnp Length = 333 2e-42
1nhj_A333 Crystal Structure Of N-Terminal 40kd MutlA100P MUTA 5e-42
3h4l_A367 Crystal Structure Of N Terminal Domain Of A Dna Rep 1e-36
1ea6_A364 N-Terminal 40kda Fragment Of Nhpms2 Complexed With 4e-36
1h7u_A365 Hpms2-atpgs Length = 365 4e-36
1h7s_A365 N-Terminal 40kda Fragment Of Human Pms2 Length = 36 4e-36
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens Length = 348 Back     alignment and structure 
Iteration: 1

 Score =  384 bits (985), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/344 (52%), Positives = 253/344 (73%), Gaps = 4/344 (1%)
Query: 22  IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
           I RL+E+VVNRIAAGEVIQRP +A+KE++EN LDA +TSI V+VK+GGLKLIQ+ D+G G
Sbjct: 9   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 68
Query: 82  IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
           IR EDL I+CER TTSKL  +EDL SI + GFRGEALAS+++V HVT+TT T      YR
Sbjct: 69  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 128
Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
            SY DG +++ PK CA  +GTQI VE+LFYN+  RRK L+N S++Y KI++++ R ++H+
Sbjct: 129 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 188
Query: 202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
             +SFS +K G   ADV ++  +S +D+IR+++G +V+  L+++      +  +  FKM+
Sbjct: 189 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGC----EDKTLAFKMN 244
Query: 262 GYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHV 321
           GY+SN+NY  KK   +LF+N RLVE   L++A+E VYAA  PK + PF+Y+S+ + P++V
Sbjct: 245 GYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 304
Query: 322 DVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQT 365
           DVNVHPTK EV  L++E I+E++Q  +E KL  SN SR Y  QT
Sbjct: 305 DVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQT 348
>pdb|1B62|A Chain A, Mutl Complexed With Adp Length = 355 Back     alignment and structure
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E. Coli Dna Mismatch Repair Protein Mutl Length = 352 Back     alignment and structure
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp Length = 333 Back     alignment and structure
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT PROTEIN COMPLEX With Adpnp And One Sodium Length = 333 Back     alignment and structure
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair Prote Length = 367 Back     alignment and structure
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp Length = 364 Back     alignment and structure
>pdb|1H7U|A Chain A, Hpms2-atpgs Length = 365 Back     alignment and structure
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2 Length = 365 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 1e-176
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 1e-156
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 1e-152
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 1e-108
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 4e-04
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 Back     alignment and structure
 Score =  495 bits (1278), Expect = e-176
 Identities = 181/346 (52%), Positives = 253/346 (73%), Gaps = 4/346 (1%)

Query: 20  PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDG 79
             I RL+E+VVNRIAAGEVIQRP +A+KE++EN LDA +TSI V+VK+GGLKLIQ+ D+G
Sbjct: 7   GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNG 66

Query: 80  HGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHG 139
            GIR EDL I+CER TTSKL  +EDL SI + GFRGEALAS+++V HVT+TT T      
Sbjct: 67  TGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCA 126

Query: 140 YRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAI 199
           YR SY DG +++ PK CA  +GTQI VE+LFYN+  RRK L+N S++Y KI++++ R ++
Sbjct: 127 YRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSV 186

Query: 200 HHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFK 259
           H+  +SFS +K G   ADV ++  +S +D+IR+++G +V+  L+++   +     +  FK
Sbjct: 187 HNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCED----KTLAFK 242

Query: 260 MDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPE 319
           M+GY+SN+NY  KK   +LF+N RLVE   L++A+E VYAA  PK + PF+Y+S+ + P+
Sbjct: 243 MNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQ 302

Query: 320 HVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQT 365
           +VDVNVHPTK EV  L++E I+E++Q  +E KL  SN SR Y  QT
Sbjct: 303 NVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQT 348
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 100.0
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 100.0
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 100.0
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 100.0
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 100.0
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 99.98
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 99.97
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 99.97
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 99.95
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 99.95
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 99.94
4duh_A220 DNA gyrase subunit B; structure-based drug design, 99.93
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.92
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.91
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 99.91
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 99.9
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 99.9
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 99.89
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 99.88
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 99.88
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.82
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 99.81
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 99.79
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.7
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 99.7
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 99.7
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.69
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 99.65
3peh_A281 Endoplasmin homolog; structural genomics, structur 99.63
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 99.61
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 99.6
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 99.34
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 99.11
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 98.49
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 98.41
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 98.38
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 98.38
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 98.35
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 98.27
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.26
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 98.25
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 98.23
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 98.21
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.2
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 98.19
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 98.17
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 98.15
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 98.14
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 98.12
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 98.1
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 98.09
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 98.04
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 98.03
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 97.97
3zxo_A129 Redox sensor histidine kinase response regulator; 97.94
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 97.93
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 97.18
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 95.19
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 93.74
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.3e-83  Score=655.48  Aligned_cols=344  Identities=53%  Similarity=0.880  Sum_probs=285.1

Q ss_pred             CCccccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccC
Q 012406           18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS   97 (464)
Q Consensus        18 ~~~~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TS   97 (464)
                      .+++|++||++++++|+|||+|.+|.++|+|||+||+||+|+.|.|.++.+|...|+|.|||+||++++++.+|++|+||
T Consensus         5 m~~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~ts   84 (348)
T 3na3_A            5 VAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTS   84 (348)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCS
T ss_pred             cccccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhcccccc
Confidence            56689999999999999999999999999999999999999999999998877779999999999999999999999999


Q ss_pred             CCccccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEEcCceecccccccCCCceEEEEEeeeccchhhh
Q 012406           98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARR  177 (464)
Q Consensus        98 K~~~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRr  177 (464)
                      |+.+++|+..+.++|||||||+||+++|+|+|+||++++..+|++.|++|++....++++.++||+|+|+|||+|+|+|+
T Consensus        85 K~~~~~dl~~i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~  164 (348)
T 3na3_A           85 KLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRR  164 (348)
T ss_dssp             SCCCC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHH
T ss_pred             ccCcchhhhccccCCcCChHHHHhhcccEEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCCcEEEECcccccCchhh
Confidence            99999999999999999999999999999999999999989999999999886555677889999999999999999999


Q ss_pred             hcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEcCCCCCHHHHHHHHhChhhhcccEEeeeeccCCCCCce
Q 012406          178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFV  257 (464)
Q Consensus       178 k~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~  257 (464)
                      ++|++.+.|+.+|.+++++||++||+|+|+|.++|+....+++.+..++.+++.++||..++++|++++.+.  +.  .+
T Consensus       165 k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~--~~--~~  240 (348)
T 3na3_A          165 KALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCED--KT--LA  240 (348)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEE--GG--GT
T ss_pred             hhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeec--CC--cc
Confidence            999998899999999999999999999999999998766788989999999999999999999999998876  22  45


Q ss_pred             eEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCCh
Q 012406          258 FKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQ  337 (464)
Q Consensus       258 ~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e  337 (464)
                      ++++||++.|+++.++..||+|||||||.++.|.++|+++|+.++|+++|||+||+|+|||+.|||||||+|+||+|.+|
T Consensus       241 ~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e  320 (348)
T 3na3_A          241 FKMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHE  320 (348)
T ss_dssp             EEEEEEEECSSCCBSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC--------------------
T ss_pred             EEEEEEEeCCccCCCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCH
Confidence            99999999999887778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcccccc
Q 012406          338 ELIVEKIQSAVELKLRQSNDSRTYKEQT  365 (464)
Q Consensus       338 ~~Ii~~I~~~l~~~L~~~~~sr~f~~q~  365 (464)
                      ++|++.|+++|++.|...++||+|.+|+
T Consensus       321 ~~i~~~i~~~v~~~l~~~~~sr~f~~~~  348 (348)
T 3na3_A          321 ESILERVQQHIESKLLGSNSSRMYFTQT  348 (348)
T ss_dssp             --CTHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceeeccC
Confidence            9999999999999999999999999985
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 464
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 3e-64
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 9e-53
d1b63a1115 d.14.1.3 (A:217-331) DNA mismatch repair protein M 1e-20
d1h7sa1134 d.14.1.3 (A:232-365) DNA mismatch repair protein P 2e-19
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 3e-18
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score =  204 bits (521), Expect = 3e-64
 Identities = 78/213 (36%), Positives = 125/213 (58%), Gaps = 1/213 (0%)

Query: 22  IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
           I  L   + N+IAAGEV++RP S VKELVENSLDA AT I++ ++ GG KLI++ D+G G
Sbjct: 5   IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 64

Query: 82  IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
           I+ ++L +   RH TSK++  +DL++I S+GFRGEALAS++ V  +T+T+ T      ++
Sbjct: 65  IKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 124

Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
                  M    K  A   GT + V +LFYN  ARRK L+    ++  I +++ R+A+  
Sbjct: 125 AYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALAR 184

Query: 202 TNVSFSCRKHGAARADVHSIATSS-RLDSIRTV 233
            +V+ +   +G       ++     +   +  +
Sbjct: 185 FDVTINLSHNGKIVRQYRAVPEGGQKERRLGAI 217
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 100.0
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 100.0
d1b63a1115 DNA mismatch repair protein MutL {Escherichia coli 99.95
d1h7sa1134 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.92
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.9
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 99.54
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 99.53
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.49
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 99.48
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.38
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.34
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 99.15
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 98.75
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 98.75
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 98.68
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 98.65
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 98.65
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 98.63
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 98.33
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 98.14
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 98.1
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 97.79
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure