Citrus Sinensis ID: 012416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
Protein Sequence
MATDSDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCMWNLLIDLITLRHKFSNL
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEEHHccccccccccHHHHHccccccccccccHHHHHHHHHHcccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHccccHcEEEEEccccccHHHHHHHHHccccEEEEEccccccEEEEEEHHHHEEccccccccccHccccccccccccccHHHHHHHHHccccEEEEEEcccccccccEcHHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
matdsdvaccGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIksgrpqdrihaakifpvVKNQHLLLCTLLIGNSLAMEALpifldklvppwAAVLISVTLILMFGEILPQAVCTrygltvgatmAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNfhgneagkggdlthDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTmghsrvpvysgnptnIIGLILVKNllsvdyrdavpLRKMIIRriprvsedmplyDILNEFQKGHSHIAVVYKdlnekkegelfkdnckkprgqpekssqkvdngvTAAGQNLRNkleskdaqqtkkvppatptfnkrhrgcsycildfengpfpdfpsndeavgvITMEDVIEELLQEeildetdeYVNIHNRLSFMFSFVFYFFIFLCMWNLLIDLITLRHKFSNL
Flexible Loop (DISEMBL)
MATDSDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGneagkggdlthDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIrriprvsedmpLYDILNEFQKGHSHIAVVYKDLNEKKEGelfkdnckkprgqpekssqkvdngvtAAGQNLrnkleskdaqqtkkvppatptfnkrhrGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCMWNLLIDLITLRHKFSNL
Low Complexity Region (SEG)
MATDSDVACCGTMFFVFVLGIIALVCFaglmagltlglmslglVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSldldatltldtlNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMedvieellqeeildetdeYVNIHNRLSfmfsfvfyffifLCMWNLLIDLITLRHKFSNL
Disordered region (IsUnstruct)
******VACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL**************************************************************RHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCMWNLLIDLITLRH*****
Disordered Region (DISOPRED)
********CCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDL***************AKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGH******AE**TFVNF**********LTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLR************KVPPATPTFNKRHRGCSY*ILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCMWNLLIDLITLRHKF***
Disordered Region (DISEMBL)
MATDSDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK**************NGVTAAGQNLRN**************PATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCMWNLLIDLITLRHKFSNL
Disordered Region (DISPRO)
*****DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKS************************Q********************YCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCMWNLLIDLITLRHKFS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATDSDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCMWNLLIDLITLRHKFSNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	464	2.2.26 [Sep-21-2011]
Q8RY60	527	DUF21 domain-containing p	yes	no	0.911	0.802	0.729	0.0
Q9ZQR4	423	DUF21 domain-containing p	no	no	0.868	0.952	0.575	1e-133
Q8VZI2	424	DUF21 domain-containing p	no	no	0.881	0.964	0.569	1e-128
Q9LTD8	500	DUF21 domain-containing p	no	no	0.849	0.788	0.529	1e-125
Q67XQ0	494	DUF21 domain-containing p	no	no	0.840	0.789	0.491	1e-108
Q4V3C7	495	DUF21 domain-containing p	no	no	0.890	0.834	0.488	1e-107
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.851	0.791	0.477	1e-104
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.644	0.423	0.389	2e-54
Q9USJ3	679	Uncharacterized protein C	yes	no	0.618	0.422	0.394	2e-54
Q9H8M5	875	Metal transporter CNNM2 O	yes	no	0.650	0.345	0.376	2e-51

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/448 (72%), Positives = 369/448 (82%), Gaps = 25/448 (5%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           SD+ CCGT F ++V+ IIALV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI+A KI
Sbjct: 3   SDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNS+AMEALPIFLDK+VPPW A+L+SVTLIL+FGEI+PQAVCTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL VGA MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLT DET+II GALELTEKTAKDAMTPIS AFSL+LD  L L+TLN IM++GHSRVP
Sbjct: 183 KGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY  NPT+IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHI
Sbjct: 243 VYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEG------------------ELFKDNCKKPRGQPEKSSQ---KVDNGVT 343
           AVVYKDL+E+++                   ELFKD+C+KP+ Q E S +   K++ G  
Sbjct: 303 AVVYKDLDEQEQSPETSENGIERRKNKKTKDELFKDSCRKPKAQFEVSEKEVFKIETGDA 362

Query: 344 AAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVI 403
            +G++   + +    + +    PA     KRHRGCS+CILD EN P PDFP+N+E VGVI
Sbjct: 363 KSGKSENGEEQQGSGKTSLLAAPA----KKRHRGCSFCILDIENTPIPDFPTNEEVVGVI 418

Query: 404 TMEDVIEELLQEEILDETDEYVNIHNRL 431
           TMEDVIEELLQEEILDETDEYVNIHNR+
Sbjct: 419 TMEDVIEELLQEEILDETDEYVNIHNRI 446

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  473 bits (1218), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/426 (57%), Positives = 299/426 (70%), Gaps = 23/426 (5%)

Query: 9   CCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVV 68
           CCGT FF+ +  I+ LV FAGLM+GLTLGLMS+ LVDLEVL KSG P+DRIHAAKI PVV
Sbjct: 7   CCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVV 66

Query: 69  KNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLT 128
           KNQHLLLCTLLI N+ AMEALPIFLD LV  W A+LISVTLIL+FGEI+PQ+VC+R+GL 
Sbjct: 67  KNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLA 126

Query: 129 VGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD 188
           +GAT+AP VRVL+ +  P+++PISK+LD +LG G   L RRAELKT V+ HGNEAGKGG+
Sbjct: 127 IGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGE 186

Query: 189 LTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG 248
           LTHDETTIIAGALEL+EK AKDAMTPIS  F +D++A L  D +N I+  GHSRVPVY  
Sbjct: 187 LTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYE 246

Query: 249 NPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 308
             TNIIGL+LVKNLL+++  + + ++ + IRRIPRV E +PLYDILNEFQKGHSH+AVV 
Sbjct: 247 QRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVV 306

Query: 309 KDLNEKKEGELFKDNCKKPRG-QPEKSSQKVDNGVTAAGQNLRNKLESK-----DAQQTK 362
           +              C K    Q   ++ +  N V       R+  E+K       Q+ K
Sbjct: 307 R-------------QCDKIHPLQSNDAANETVNEVRVDVDYERSPQETKLKRRRSLQKWK 353

Query: 363 KVPPATPTFNKRHRGCS----YCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEIL 418
             P    +   R +  S      IL     P P     ++AVG+ITMEDVIEELLQEEI 
Sbjct: 354 SFPNRANSLGSRSKRWSKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQEEIF 413

Query: 419 DETDEY 424
           DETD +
Sbjct: 414 DETDHH 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  459 bits (1182), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/427 (56%), Positives = 299/427 (70%), Gaps = 18/427 (4%)

Query: 6   DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIF 65
           +  CC   FF+ +  I+ LV FAGLM+GLTLGLMSL LVDLEVL KSG P+ R +AAKI 
Sbjct: 4   EYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKIL 63

Query: 66  PVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRY 125
           PVVKNQHLLL TLLI N+ AME LPIFLD LV  W A+LISVTLIL+FGEI+PQ++C+RY
Sbjct: 64  PVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRY 123

Query: 126 GLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGK 185
           GL +GAT+AP VRVL+ +  P+++PISK+LD +LG   A L RRAELKT V+FHGNEAGK
Sbjct: 124 GLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGK 183

Query: 186 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV 245
           GG+LTHDETTIIAGALEL+EK  KDAMTPIS  F +D++A L  D +N I+  GHSRVPV
Sbjct: 184 GGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPV 243

Query: 246 YSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
           Y   PTNIIGL+LVKNLL+++  + +P++ + IRRIPRV E +PLYDILNEFQKG SH+A
Sbjct: 244 YYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMA 303

Query: 306 VVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQN--LRNKLESKDAQQTKK 363
           VV +  +  K   L   N     G  +++   VD+  T   Q   LR K   +  Q+ K 
Sbjct: 304 VVVRQCD--KIHPLPSKN-----GSVKEARVDVDSEGTPTPQERMLRTK---RSLQKWKS 353

Query: 364 VPPATPTFNKRHRGCSYC------ILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEI 417
            P    +F    +   +       IL     P P     +EAVG+ITMEDVIEELLQEEI
Sbjct: 354 FPNRASSFKGGSKSKKWSKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQEEI 413

Query: 418 LDETDEY 424
            DETD +
Sbjct: 414 FDETDHH 420

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/431 (52%), Positives = 298/431 (69%), Gaps = 37/431 (8%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +DV CC TMF+V++L  +ALV FAGLM+GLTLGLMSL +V+LEV+IK+G P DR +A KI
Sbjct: 4   NDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAEKI 63

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
            P+VKNQHLLLCTLLIGN+LAMEALPIF+D L+P W A+LISVTLIL FGEI+PQAVC+R
Sbjct: 64  LPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVCSR 123

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL++GA ++ +VR+++ +FFP+SYPISK+LDL+LGK H+ LL RAELK+ V  HGNEAG
Sbjct: 124 YGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEAG 183

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGG+LTHDETTII+GAL++++K+AKDAMTP+S+ FSLD++  L   T+  I + GHSR+P
Sbjct: 184 KGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRIP 243

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           +YS NP  IIG ILVKNL+ V   D   +R + IRR+P+V  ++PLYDILN FQ G SH+
Sbjct: 244 IYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSHM 303

Query: 305 AVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKV 364
           A V    N                           N  T   +   N   +KDA     +
Sbjct: 304 AAVVGTKNHT-------------------------NTNTPVHEKSINGSPNKDANVFLSI 338

Query: 365 PPATPTFNKRHRGCSY--CILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETD 422
           P    +         Y   I D           ++E +G+IT+EDV+EEL+QEEI DETD
Sbjct: 339 PALNSSETSHQSPIRYIDSISD----------EDEEVIGIITLEDVMEELIQEEIYDETD 388

Query: 423 EYVNIHNRLSF 433
           +YV +H R++ 
Sbjct: 389 QYVELHKRITI 399

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/437 (49%), Positives = 283/437 (64%), Gaps = 47/437 (10%)

Query: 11  GTMFFVFVLGIIA-LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVK 69
           G+  ++   GI   LV FAG+M+GLTLGLMSLGLV+LE+L +SG P ++  AA IFPVV+
Sbjct: 31  GSFEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQ 90

Query: 70  NQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
            QH LL TLL+ N++AME LPI+LDKL   + A+++SVT +L FGE++PQA+CTRYGL V
Sbjct: 91  KQHQLLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAV 150

Query: 130 GATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDL 189
           GA    +VR+L+ L +PI++PI KILDL+LG   A L RRA+LK  V+ H  EAGKGG+L
Sbjct: 151 GANFVWLVRILMTLCYPIAFPIGKILDLVLGHNDA-LFRRAQLKALVSIHSQEAGKGGEL 209

Query: 190 THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN 249
           THDETTII+GAL+LTEKTA++AMTPI   FSLD+++ L  + +  I+  GHSRVPVYSGN
Sbjct: 210 THDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN 269

Query: 250 PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA---- 305
           P N+IGL+LVK+LL+V       +  + IRRIPRV  DMPLYDILNEFQKG SH+A    
Sbjct: 270 PKNVIGLLLVKSLLTVRPETETLVSAVCIRRIPRVPADMPLYDILNEFQKGSSHMAAVVK 329

Query: 306 -----------VVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLE 354
                      ++ +  +E  + +L      K  G  +     +D    A GQ+     E
Sbjct: 330 VKGKSKVPPSTLLEEHTDESNDSDLTAPLLLKREGNHDNVIVTIDK---ANGQSFFQNNE 386

Query: 355 SKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQ 414
           S                     G S+     E+G         E +G+IT+EDV EELLQ
Sbjct: 387 SGP------------------HGFSHTSEAIEDG---------EVIGIITLEDVFEELLQ 419

Query: 415 EEILDETDEYVNIHNRL 431
           EEI+DETDEYV++H R+
Sbjct: 420 EEIVDETDEYVDVHKRI 436

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/434 (48%), Positives = 291/434 (67%), Gaps = 21/434 (4%)

Query: 2   ATDSDVACCGTMFFVFVLGIIA-LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIH 60
           A  S+    G++ ++   GI   LV FAG+M+GLTLGLMSLGLV+LE+L +SG P+++  
Sbjct: 21  ALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQ 80

Query: 61  AAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQA 120
           +A IFPVV+ QH LL TLL+ N+LAME LPI+LDK+   + A+++SVT +L  GE++PQA
Sbjct: 81  SAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQA 140

Query: 121 VCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHG 180
           +CTRYGL VGA +  +VR+L+ L +PIS+PI+K+LD +LG     L RRA+LK  V+ HG
Sbjct: 141 ICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGHNDP-LFRRAQLKALVSIHG 199

Query: 181 NEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH 240
             AGKGG+LTHDETTII+GAL+LTEKTA++AMTPI   FSLD+++ L  + ++ I   GH
Sbjct: 200 EAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGH 259

Query: 241 SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKG 300
           SRVPVYS NP N+IGL+LVK+LL+V       +  + IRRIPRV  +MPLYDILNEFQKG
Sbjct: 260 SRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKG 319

Query: 301 HSHIAVVYKDLNEKKEGE---LFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKD 357
            SH+A V K +  K +G    L ++N     G+   SS   +  +TA     R       
Sbjct: 320 SSHMAAVVK-VKGKSKGHPSTLHEENS----GESNVSSNNSE--LTAPLLLKREGNHDSV 372

Query: 358 AQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEI 417
             +  K    +       +G S+   + E+G         + +G+IT+EDV EELLQEEI
Sbjct: 373 IVRIDKANGQSFISEAGRQGFSHTSEEIEDG---------DVIGIITLEDVFEELLQEEI 423

Query: 418 LDETDEYVNIHNRL 431
           +DETDEY+++H R+
Sbjct: 424 VDETDEYIDVHKRI 437

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/436 (47%), Positives = 286/436 (65%), Gaps = 41/436 (9%)

Query: 11  GTMFFVFVLGIIA-LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVK 69
           G+ ++  V+G+   LV FAG+M+GLTLGLMSLGLV+LE+L +SG   ++  AA I PVVK
Sbjct: 29  GSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAAILPVVK 88

Query: 70  NQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
            QH LL TLL+ N+ AMEALPI LDK+  P+ AVL+SVT +L FGEI+PQA+C+RYGL V
Sbjct: 89  KQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAV 148

Query: 130 GATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDL 189
           GA    +VR+L+ + +PI+YPI K+LD ++G  +  L RRA+LK  V+ H  EAGKGG+L
Sbjct: 149 GANFLWLVRILMIICYPIAYPIGKVLDAVIGH-NDTLFRRAQLKALVSIHSQEAGKGGEL 207

Query: 190 THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN 249
           TH+ET II+GAL+L++KTA++AMTPI   FSLD++  L  +T+  I++ GHSR+PVY GN
Sbjct: 208 THEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGN 267

Query: 250 PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAV--- 306
           P NIIGL+LVK+LL+V      P+  + IR+IPRV  DMPLYDILNEFQKG SH+A    
Sbjct: 268 PKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHMAAVVK 327

Query: 307 -----VYKDLNEKKEGELFKDNCK--------KPRGQPEKSSQKVDNGVTAAGQNLRNKL 353
                   ++     GE  K+N K         P  + E     VD  +    ++++N+ 
Sbjct: 328 VKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHESHDVVVD--IDKVPKHVKNR- 384

Query: 354 ESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELL 413
             ++ QQ   V    P           C+L+ +N        + E +G+IT+EDV EELL
Sbjct: 385 -GRNFQQNGTVTRDLP-----------CLLE-DN-------EDAEVIGIITLEDVFEELL 424

Query: 414 QEEILDETDEYVNIHN 429
           Q EI+DETD Y+++H 
Sbjct: 425 QAEIVDETDVYIDVHK 440

Arabidopsis thaliana (taxid: 3702)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  214 bits (544), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 181/308 (58%), Gaps = 9/308 (2%)

Query: 6   DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIF 65
           D A   T + + ++    LV   G+ AGLTLGLM    V L+V+  SG   ++  A ++ 
Sbjct: 57  DEASVTTYYIISII----LVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVL 112

Query: 66  PVV-KNQHLLLCTLLIGNSLAMEALPIFLDK-LVPPWAAVLISVTLILMFGEILPQAVCT 123
            ++ + +H +L TLL+ N +  E LPI LD+ L   W AV+ S  LI++FGEI+PQ+VC 
Sbjct: 113 DLISRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCV 172

Query: 124 RYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEA 183
           +YGL VGA   P V VL+ L +P++YPI+ +LD MLG+ H  + +++ LKT V  H    
Sbjct: 173 KYGLQVGAFFCPFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMG 232

Query: 184 GKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV 243
            +   LT DE TII+  L+L  K  ++ MTPI   F++  D  L   T+  I   G SR+
Sbjct: 233 VE--RLTKDEVTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRI 290

Query: 244 PVYSGN-PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHS 302
           P++  N P N IG++LV+ L+S D  D +P+    +  +P  S +    +ILN FQ+G +
Sbjct: 291 PIFLPNEPNNFIGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKA 350

Query: 303 HIAVVYKD 310
           H+ VV K+
Sbjct: 351 HMCVVSKE 358

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/294 (39%), Positives = 177/294 (60%), Gaps = 7/294 (2%)

Query: 24  LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVK-NQHLLLCTLLIGN 82
           L+   G+ AGLT+GLM    + L+VL +SG   +R+HA K+  +++  +H +L TLL+GN
Sbjct: 72  LILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKHWVLVTLLLGN 131

Query: 83  SLAMEALPIFLDKLVPP-WAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLL 141
            +  E LPI  D ++   W AVLIS  +I++FGE++PQA C RYGL++GA + PIV  ++
Sbjct: 132 VIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGAKLEPIVLFMM 191

Query: 142 CLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD-LTHDETTIIAGA 200
            L +PI+YP + ILD  LG+  + + +++ LKT V  H +    G D L  DE TII   
Sbjct: 192 YLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRD---LGIDKLNQDEVTIITAV 248

Query: 201 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYS-GNPTNIIGLILV 259
           L+L EK A+  MTPI   F+L +D  L  D +  I+  G+SR+PV+  G P + IG++L 
Sbjct: 249 LDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFPHDFIGMLLT 308

Query: 260 KNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE 313
           K L+  D  D  P+ K  +  +P+   +    D+LN  Q+G SH+ ++     E
Sbjct: 309 KTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILISNSPGE 362

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9H8M5|CNNM2_HUMAN Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 PE=1 SV=2

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 184/311 (59%), Gaps = 9/311 (2%)

Query: 14  FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHL 73
           F++ V+ I  L+C +G+ +GL LGLM+L  ++L ++   G  +++ +A +I PV +  + 
Sbjct: 255 FWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKNYAKRIEPVRRQGNY 314

Query: 74  LLCTLLIGNSLAMEALPIFLDKLVPP-WAAVLISVTLILMFGEILPQAVCTRYGLTVGAT 132
           LLC+LL+GN L    L I LD +      AV++S   I++FGEI+PQA+C+R+GL VGA 
Sbjct: 315 LLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVPQAICSRHGLAVGAN 374

Query: 133 MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 192
              + +  + + FP SYP+SK+LD +LG+    +  R +L   +           DL  +
Sbjct: 375 TIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV----TDPYNDLVKE 430

Query: 193 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 252
           E  II GALEL  KT +D MTP+   F +  +A L  +T++ IM  G++R+PV+ G  +N
Sbjct: 431 ELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSN 490

Query: 253 IIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309
           I+ L+ VK+L  VD  D  PL+   K     +  V  D  L  +L EF+KG SH+A+V +
Sbjct: 491 IVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR 550

Query: 310 DLNEKKEGELF 320
            +N + EG+ F
Sbjct: 551 -VNNEGEGDPF 560

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	464
302142492	524	unnamed protein product [Vitis vinifera]	0.913	0.809	0.788	0.0
225458287	526	PREDICTED: DUF21 domain-containing prote	0.915	0.807	0.789	0.0
224129624	513	predicted protein [Populus trichocarpa]	0.918	0.830	0.800	0.0
147771522	1762	hypothetical protein VITISV_038533 [Viti	0.913	0.240	0.743	0.0
356518903	487	PREDICTED: DUF21 domain-containing prote	0.909	0.866	0.775	0.0
356510213	487	PREDICTED: DUF21 domain-containing prote	0.907	0.864	0.771	0.0
449460096	449	PREDICTED: DUF21 domain-containing prote	0.896	0.926	0.776	0.0
449476799	449	PREDICTED: LOW QUALITY PROTEIN: DUF21 do	0.896	0.926	0.773	0.0
297846940	525	hypothetical protein ARALYDRAFT_473883 [	0.907	0.801	0.743	0.0
22330087	527	uncharacterized protein [Arabidopsis tha	0.911	0.802	0.729	0.0

>gi|302142492|emb|CBI19695.3| unnamed protein product [Vitis vinifera]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/436 (78%), Positives = 375/436 (86%), Gaps = 12/436 (2%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +DVACCGT FF++V+ I+ LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   ADVACCGTKFFIYVVIIVGLVGFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNSLAME+LPIFLDKLVPPWAA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSLAMESLPIFLDKLVPPWAAILISVTLILMFGEILPQALCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YG+TVGATMAP VRVLL LF+PI+YPISK+LD MLGKGHA LLRRAELKTFV+FHGNEAG
Sbjct: 123 YGMTVGATMAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLD TLTL+TLNAIMT+GHSRVP
Sbjct: 183 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLETLNAIMTIGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G PTNIIGLILVKNLL VD  DAVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHI
Sbjct: 243 VYAGKPTNIIGLILVKNLLMVDPDDAVPLRKMVIRKIPRVSENMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLE---------S 355
           AVV+KDLNE KE +   +  K    Q     ++ + G TA   NL  K E          
Sbjct: 303 AVVFKDLNETKEAQ---NKTKDGALQVSMKREQDEVGATAVTHNLGVKQELHDAGTAVAK 359

Query: 356 KDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQE 415
            DA Q +K  P+ P F KRHRGCS+CILD EN P P+FP N+ AVGVITMEDVIEELLQE
Sbjct: 360 NDADQQQKKNPSVPVFKKRHRGCSFCILDVENAPLPEFPPNEVAVGVITMEDVIEELLQE 419

Query: 416 EILDETDEYVNIHNRL 431
           EILDETDEYVNIHNR+
Sbjct: 420 EILDETDEYVNIHNRI 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458287|ref|XP_002282587.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Vitis vinifera]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/437 (78%), Positives = 376/437 (86%), Gaps = 12/437 (2%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +DVACCGT FF++V+ I+ LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   ADVACCGTKFFIYVVIIVGLVGFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNSLAME+LPIFLDKLVPPWAA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSLAMESLPIFLDKLVPPWAAILISVTLILMFGEILPQALCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YG+TVGATMAP VRVLL LF+PI+YPISK+LD MLGKGHA LLRRAELKTFV+FHGNEAG
Sbjct: 123 YGMTVGATMAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLD TLTL+TLNAIMT+GHSRVP
Sbjct: 183 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLETLNAIMTIGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G PTNIIGLILVKNLL VD  DAVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHI
Sbjct: 243 VYAGKPTNIIGLILVKNLLMVDPDDAVPLRKMVIRKIPRVSENMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEGE-LFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLE--------- 354
           AVV+KDLNE KE +   KD   +   +  +   +V  G TA   NL  K E         
Sbjct: 303 AVVFKDLNETKEAQNKTKDGALQVSMKRGEDQDEV--GATAVTHNLGVKQELHDAGTAVA 360

Query: 355 SKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQ 414
             DA Q +K  P+ P F KRHRGCS+CILD EN P P+FP N+ AVGVITMEDVIEELLQ
Sbjct: 361 KNDADQQQKKNPSVPVFKKRHRGCSFCILDVENAPLPEFPPNEVAVGVITMEDVIEELLQ 420

Query: 415 EEILDETDEYVNIHNRL 431
           EEILDETDEYVNIHNR+
Sbjct: 421 EEILDETDEYVNIHNRI 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129624|ref|XP_002320632.1| predicted protein [Populus trichocarpa] gi|222861405|gb|EEE98947.1| predicted protein [Populus trichocarpa]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/442 (80%), Positives = 384/442 (86%), Gaps = 16/442 (3%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           SD+ CC + F ++++ II LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   SDIGCCSSKFMLYMVIIIGLVTFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVL SVTLILMFGEILPQAVCTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLASVTLILMFGEILPQAVCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGLTVGAT+AP+VRVLL LFFPISYPISK+LD MLGKGHAVLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLTVGATLAPLVRVLLLLFFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           +GGDLTHDETTII GALELTEKTAKDAMTPISKAFSLDLDATL L+TLNAIMTMGHSRVP
Sbjct: 183 RGGDLTHDETTIITGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNAIMTMGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G PTNIIGL LVKNLL+VD  DAVPL+KMIIR+IPRVSED+PLYDILNEFQKGHSHI
Sbjct: 243 VYAGKPTNIIGLFLVKNLLAVDPEDAVPLKKMIIRKIPRVSEDLPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKE--GELFKDNCKKPRGQPEKSSQKVDN--GVTAAGQNLRNKLESKD--- 357
           AVVYKDLN  KE     FKD+C+K RG+ E S +K D+  G T+A  N +  L+S D   
Sbjct: 303 AVVYKDLNANKETPKNEFKDSCRK-RGKTETSHEKGDSEVGSTSAIPNKKAALDSDDNQT 361

Query: 358 -------AQQTKKVPPAT-PTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVI 409
                   QQ KK PP+T P F KRH+GCS+CILD E  P P+FPSN+E VGVITMEDVI
Sbjct: 362 AATKNDGGQQIKKSPPSTPPAFKKRHKGCSFCILDVEKAPIPEFPSNEEVVGVITMEDVI 421

Query: 410 EELLQEEILDETDEYVNIHNRL 431
           EELLQEEILDETDEYVNIHNR+
Sbjct: 422 EELLQEEILDETDEYVNIHNRI 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771522|emb|CAN75692.1| hypothetical protein VITISV_038533 [Vitis vinifera]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/464 (74%), Positives = 375/464 (80%), Gaps = 40/464 (8%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +DVACCGT FF++V+ I+ LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   ADVACCGTKFFIYVVIIVGLVGFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNSLAME+LPIFLDKLVPPWAA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSLAMESLPIFLDKLVPPWAAILISVTLILMFGEILPQALCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YG+TVGATMAP VRVLL LF+PI+YPISK+LD MLGKGHA LLRRAELKTFV+FHGNEAG
Sbjct: 123 YGMTVGATMAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTL--------------- 229
           KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLD TLTL               
Sbjct: 183 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLWVYKFLINLSISIMF 242

Query: 230 -------------DTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM 276
                        +TLNAIMT+GHSRVPVY+G PTNIIGLILVKNLL VD  DAVPLRKM
Sbjct: 243 PCHSYVFILFSLRETLNAIMTIGHSRVPVYAGKPTNIIGLILVKNLLMVDPDDAVPLRKM 302

Query: 277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQ 336
           +IR+IPRVSE+MPLYDILNEFQKGHSHIAVV+KDLNE KE +   +  K    Q     +
Sbjct: 303 VIRKIPRVSENMPLYDILNEFQKGHSHIAVVFKDLNETKEAQ---NKTKDGALQVSMKRE 359

Query: 337 KVDNGVTAAGQNLRNKLE---------SKDAQQTKKVPPATPTFNKRHRGCSYCILDFEN 387
           + + G TA   NL  K E           DA Q +K  PA P F KRHRGCS+CILD EN
Sbjct: 360 QDEVGATAVTHNLGVKQELHDAGTAVAKNDADQQQKKNPAVPVFKKRHRGCSFCILDVEN 419

Query: 388 GPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRL 431
            P P+FP N+ AVGVITMEDVIEELLQEEILDETDEYVNIHNR+
Sbjct: 420 APLPEFPPNEVAVGVITMEDVIEELLQEEILDETDEYVNIHNRI 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518903|ref|XP_003528116.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Glycine max]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/433 (77%), Positives = 368/433 (84%), Gaps = 11/433 (2%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +++ CCGT F ++VL II LVCFAGLMAGLTLGLMSLG+VDLEVLIKSGRPQDRIHAAKI
Sbjct: 3   AEIPCCGTKFSLYVLVIIGLVCFAGLMAGLTLGLMSLGIVDLEVLIKSGRPQDRIHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           +PVVKNQHLLLCTLLIGNSLAMEALPIFLD LV P AA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  YPVVKNQHLLLCTLLIGNSLAMEALPIFLDSLVHPAAAILISVTLILMFGEILPQAICTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGLTVGAT+AP+VRVLL +FFP SYPISK+LD MLGKGHA LL+RAELKTFVNFHGNEAG
Sbjct: 123 YGLTVGATLAPLVRVLLIVFFPFSYPISKVLDWMLGKGHAALLKRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTII GALELTEKTAKDAMTPISKAFSLDLDATL L+TLN+IMT+GHSRVP
Sbjct: 183 KGGDLTHDETTIITGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTIGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G  TNIIGL+LVKNL  VD + AVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHI
Sbjct: 243 VYAGEKTNIIGLVLVKNLFMVDSKAAVPLRKMLIRKIPRVSENMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKD------A 358
           AVVY+DLN+K E    K N  +     +K     +N   A G     KLES D      A
Sbjct: 303 AVVYRDLNDKNEAP-KKVNDGEQLDLKDKHKNNGENASLAKGV----KLESHDSLITDGA 357

Query: 359 QQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEIL 418
           QQ KK PPATP F KRHRGCSYCILD +N P P FP N+  VGVITMEDVIEELLQEEIL
Sbjct: 358 QQAKKSPPATPAFKKRHRGCSYCILDLDNAPLPVFPPNEVVVGVITMEDVIEELLQEEIL 417

Query: 419 DETDEYVNIHNRL 431
           DETDEYVNIHN++
Sbjct: 418 DETDEYVNIHNKI 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510213|ref|XP_003523834.1| PREDICTED: DUF21 domain-containing protein At1g47330 [Glycine max]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/434 (77%), Positives = 372/434 (85%), Gaps = 13/434 (2%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           +++ CCGT F ++VL II LVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHA+KI
Sbjct: 3   AEIPCCGTKFSLYVLVIIGLVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHASKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           +PVVKNQHLLLCTLLIGNSLAMEALPIFLD LV P AA+LISVTLILMFGEILPQA+CTR
Sbjct: 63  YPVVKNQHLLLCTLLIGNSLAMEALPIFLDSLVHPAAAILISVTLILMFGEILPQAICTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGLTVGAT+AP+VRVLL +FFP+SYPISK+LD MLGKGHA LL+RAELKTFVNFHGNEAG
Sbjct: 123 YGLTVGATLAPLVRVLLIVFFPLSYPISKVLDWMLGKGHAALLKRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTII GAL+LTEKTAKDAMTPISKAFSLDLDATL L+TLN+IMT+GHSRVP
Sbjct: 183 KGGDLTHDETTIITGALDLTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTIGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY+G  TNIIGL+LVKNL  VD + AVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHI
Sbjct: 243 VYAGEKTNIIGLVLVKNLFMVDSKAAVPLRKMLIRKIPRVSENMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEK-------KEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKD 357
           AVVY+DLN+K       K+GEL  D   K + + EK+S  +D G           L +  
Sbjct: 303 AVVYRDLNDKNEAPKKVKDGELL-DLKDKRKNKGEKTS--LDKGEKLESH---YSLTTDG 356

Query: 358 AQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEI 417
           AQQ KK PPATP F KRHRGCSYCILD +N P P FP N+  VGVITMEDVIEELLQEEI
Sbjct: 357 AQQAKKSPPATPAFKKRHRGCSYCILDLDNSPLPVFPPNEVVVGVITMEDVIEELLQEEI 416

Query: 418 LDETDEYVNIHNRL 431
           LDETDEYVNIHN++
Sbjct: 417 LDETDEYVNIHNKI 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460096|ref|XP_004147782.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Cucumis sativus]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/438 (77%), Positives = 365/438 (83%), Gaps = 22/438 (5%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
            DV CC + FF+F+L I  LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDR HAAKI
Sbjct: 3   EDVRCCESKFFLFLLIIAGLVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRKHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
            PVVKNQHLLLCTLLIGNSLAMEALPIFLD +VPPWAAVL+SVTLILMFGEILPQA+CTR
Sbjct: 63  LPVVKNQHLLLCTLLIGNSLAMEALPIFLDMIVPPWAAVLVSVTLILMFGEILPQAICTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL VGA MAP+VR+LL +FFPISYPISK+LD MLGKGHAVLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLKVGAIMAPLVRILLIVFFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTIIAGALELTEKTAKDAMT IS AFSLDLDATL L+TLNAIMT GHSRVP
Sbjct: 183 KGGDLTHDETTIIAGALELTEKTAKDAMTSISNAFSLDLDATLDLETLNAIMTKGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VYSG+P NIIGL+LVKNLL+VD  D V L+KMIIR+IPRVSEDMPLYDILNEFQKGHSHI
Sbjct: 243 VYSGDPKNIIGLVLVKNLLTVDPEDRVSLKKMIIRKIPRVSEDMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQ----- 359
           AVV+     KK G   +   KK  G        V++G  AA QN+  K+ES DAQ     
Sbjct: 303 AVVF-----KKHGHQSETLPKKDIG--------VNSGDAAAAQNIGMKMESVDAQTVAEK 349

Query: 360 ----QTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQE 415
               QTKK PPATP F KRHRGCS+CILD EN P P FP  +E VGVITMEDVIEELLQE
Sbjct: 350 AGGLQTKKSPPATPAFKKRHRGCSFCILDVENAPLPVFPLGEEVVGVITMEDVIEELLQE 409

Query: 416 EILDETDEYVNIHNRLSF 433
           EILDETDEYVNIHNR+  
Sbjct: 410 EILDETDEYVNIHNRIKI 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476799|ref|XP_004154837.1| PREDICTED: LOW QUALITY PROTEIN: DUF21 domain-containing protein At1g47330-like [Cucumis sativus]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/438 (77%), Positives = 363/438 (82%), Gaps = 22/438 (5%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
            DV CC + FF F+L I  LV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDR HAAKI
Sbjct: 3   EDVRCCESKFFXFLLIIAGLVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRKHAAKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
            PVVKNQHLLLCTLLIGNSLAMEALPIFLD +VPPWAAVL+SVTLILMFGEILPQA+CTR
Sbjct: 63  LPVVKNQHLLLCTLLIGNSLAMEALPIFLDMIVPPWAAVLVSVTLILMFGEILPQAICTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL VGA MAP+VR+LL +FFPISYPISK+LD MLGKGHAVLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLKVGAIMAPLVRILLIVFFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLTHDETTIIAGALELTEKTAKDAMT IS AFSLDLDATL L+TLNAIMT GHSRVP
Sbjct: 183 KGGDLTHDETTIIAGALELTEKTAKDAMTSISNAFSLDLDATLDLETLNAIMTKGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VYSG+P NIIGL+LVKNLL+VD  D V L+ MIIR+IPRVSEDMPLYDILNEFQKGHSHI
Sbjct: 243 VYSGDPKNIIGLVLVKNLLTVDPEDRVSLKXMIIRKIPRVSEDMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQ----- 359
           AVV+     KK G   +   KK  G        V++G  AA QN+  K+ES DAQ     
Sbjct: 303 AVVF-----KKHGHQSETLPKKDIG--------VNSGDAAAAQNIGMKMESVDAQTVAEK 349

Query: 360 ----QTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQE 415
               QTKK PPATP F KRHRGCS+CILD EN P P FP  +E VGVITMEDVIEELLQE
Sbjct: 350 AGGLQTKKSPPATPAFKKRHRGCSFCILDVENVPLPVFPLGEEVVGVITMEDVIEELLQE 409

Query: 416 EILDETDEYVNIHNRLSF 433
           EILDETDEYVNIHNR+  
Sbjct: 410 EILDETDEYVNIHNRIKI 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846940|ref|XP_002891351.1| hypothetical protein ARALYDRAFT_473883 [Arabidopsis lyrata subsp. lyrata] gi|297337193|gb|EFH67610.1| hypothetical protein ARALYDRAFT_473883 [Arabidopsis lyrata subsp. lyrata]

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/448 (74%), Positives = 370/448 (82%), Gaps = 27/448 (6%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           SD+ CCGT F ++V+ IIALV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI+A KI
Sbjct: 3   SDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNS+AMEALPIFLDK+VPPW A+L+SVTLIL+FGEI+PQAVCTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL VGA MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLKVGAIMAPFVRVLLILFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLT DET+II GALELTEKTAKDAMTPIS AFSL+LD TL L+TLN IM++GHSRVP
Sbjct: 183 KGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTTLNLETLNTIMSVGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY  NPT+IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHI
Sbjct: 243 VYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEG------------------ELFKDNCKKPRGQ---PEKSSQKVDNGVT 343
           AVVYKDL+E+++                   ELFKD+C+KP+ Q    EK   K++ G  
Sbjct: 303 AVVYKDLDEQEQSPETSESGIERRKNKNTKDELFKDSCRKPKAQFKVSEKEVFKIETGDA 362

Query: 344 AAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVI 403
            +G     K E+ + QQ K    A P   KRHRGCS+CILD EN P PDFP+N+E VGVI
Sbjct: 363 KSG-----KSENGEEQQGKTSLLAAPA-KKRHRGCSFCILDIENTPIPDFPTNEEVVGVI 416

Query: 404 TMEDVIEELLQEEILDETDEYVNIHNRL 431
           TMEDVIEELLQEEILDETDEYVNIHNR+
Sbjct: 417 TMEDVIEELLQEEILDETDEYVNIHNRI 444

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330087|ref|NP_175166.2| uncharacterized protein [Arabidopsis thaliana] gi|75247684|sp|Q8RY60.1|Y1733_ARATH RecName: Full=DUF21 domain-containing protein At1g47330; AltName: Full=CBS domain-containing protein CBSDUF7 gi|19715640|gb|AAL91640.1| At1g47330/T3F24_2 [Arabidopsis thaliana] gi|22137130|gb|AAM91410.1| At1g47330/T3F24_2 [Arabidopsis thaliana] gi|332194036|gb|AEE32157.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/448 (72%), Positives = 369/448 (82%), Gaps = 25/448 (5%)

Query: 5   SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKI 64
           SD+ CCGT F ++V+ IIALV FAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI+A KI
Sbjct: 3   SDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKI 62

Query: 65  FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
           FPVVKNQHLLLCTLLIGNS+AMEALPIFLDK+VPPW A+L+SVTLIL+FGEI+PQAVCTR
Sbjct: 63  FPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCTR 122

Query: 125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
           YGL VGA MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAG
Sbjct: 123 YGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAG 182

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
           KGGDLT DET+II GALELTEKTAKDAMTPIS AFSL+LD  L L+TLN IM++GHSRVP
Sbjct: 183 KGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRVP 242

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY  NPT+IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHI
Sbjct: 243 VYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHI 302

Query: 305 AVVYKDLNEKKEG------------------ELFKDNCKKPRGQPEKSSQ---KVDNGVT 343
           AVVYKDL+E+++                   ELFKD+C+KP+ Q E S +   K++ G  
Sbjct: 303 AVVYKDLDEQEQSPETSENGIERRKNKKTKDELFKDSCRKPKAQFEVSEKEVFKIETGDA 362

Query: 344 AAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVI 403
            +G++   + +    + +    PA     KRHRGCS+CILD EN P PDFP+N+E VGVI
Sbjct: 363 KSGKSENGEEQQGSGKTSLLAAPA----KKRHRGCSFCILDIENTPIPDFPTNEEVVGVI 418

Query: 404 TMEDVIEELLQEEILDETDEYVNIHNRL 431
           TMEDVIEELLQEEILDETDEYVNIHNR+
Sbjct: 419 TMEDVIEELLQEEILDETDEYVNIHNRI 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	464
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.771	0.679	0.678	5.1e-122
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.840	0.921	0.523	1.2e-99
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.840	0.919	0.512	2.2e-96
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.709	0.658	0.552	5.4e-96
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.655	0.615	0.532	3.3e-79
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.868	0.807	0.421	3.8e-78
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.883	0.828	0.416	9e-77
ASPGD|ASPL0000052186	484	AN0789 [Emericella nidulans (t	0.616	0.590	0.382	5.1e-51
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.568	0.368	0.395	4.9e-48
SGD|S000005421	706	MAM3 "Protein required for nor	0.571	0.375	0.381	5.3e-48

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 247/364 (67%), Positives = 278/364 (76%)

Query:     5 SDVACCGTMFFVFVLGIIALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKI 64
             SD+ CCGT F ++V+ IIALV F                VDLEVLIKSGRPQDRI+A KI
Sbjct:     3 SDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKI 62

Query:    65 FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
             FPVVKNQHLLLCTLLIGNS+AMEALPIFLDK+VPPW A+L+SVTLIL+FGEI+PQAVCTR
Sbjct:    63 FPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCTR 122

Query:   125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
             YGL VGA MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAG
Sbjct:   123 YGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAG 182

Query:   185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVP 244
             KGGDLT DET+II GALELTEKTAKDAMTPIS AFS            N IM++GHSRVP
Sbjct:   183 KGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRVP 242

Query:   245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
             VY  NPT+IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHI
Sbjct:   243 VYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHI 302

Query:   305 AVVYKDLNEKKEGELFKDNC------KKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDA 358
             AVVYKDL+E+++     +N       KK + +  K S +         +    K+E+ DA
Sbjct:   303 AVVYKDLDEQEQSPETSENGIERRKNKKTKDELFKDSCRKPKAQFEVSEKEVFKIETGDA 362

Query:   359 QQTK 362
             +  K
Sbjct:   363 KSGK 366

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 210/401 (52%), Positives = 260/401 (64%)

Query:     9 CCGTMFFVFVLGIIALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIFPVV 68
             CCGT FF+ +  I+ LV F                VDLEVL KSG P+DRIHAAKI PVV
Sbjct:     7 CCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVV 66

Query:    69 KNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLT 128
             KNQHLLLCTLLI N+ AMEALPIFLD LV  W A+LISVTLIL+FGEI+PQ+VC+R+GL 
Sbjct:    67 KNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLA 126

Query:   129 VGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD 188
             +GAT+AP VRVL+ +  P+++PISK+LD +LG G   L RRAELKT V+ HGNEAGKGG+
Sbjct:   127 IGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGE 186

Query:   189 LTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSG 248
             LTHDETTIIAGALEL+EK AKDAMTPIS  F             N I+  GHSRVPVY  
Sbjct:   187 LTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYE 246

Query:   249 NPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 308
               TNIIGL+LVKNLL+++  + + ++ + IRRIPRV E +PLYDILNEFQKGHSH+AVV 
Sbjct:   247 QRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVV 306

Query:   309 KDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPAT 368
             +  +  K   L  ++          +  +VD     + Q  + K   +  Q+ K  P   
Sbjct:   307 RQCD--KIHPLQSNDA----ANETVNEVRVDVDYERSPQETKLK-RRRSLQKWKSFPNRA 359

Query:   369 PTFNKRHRGCSYC----ILDFENGPFPDFPSNDEAVGVITM 405
              +   R +  S      IL     P P     ++AVG+ITM
Sbjct:   360 NSLGSRSKRWSKDNDADILQLNEHPLPKLDEEEDAVGIITM 400

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
 Identities = 209/408 (51%), Positives = 259/408 (63%)

Query:     6 DVACCGTMFFVFVLGIIALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIF 65
             +  CC   FF+ +  I+ LV F                VDLEVL KSG P+ R +AAKI 
Sbjct:     4 EYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKIL 63

Query:    66 PVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRY 125
             PVVKNQHLLL TLLI N+ AME LPIFLD LV  W A+LISVTLIL+FGEI+PQ++C+RY
Sbjct:    64 PVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRY 123

Query:   126 GLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGK 185
             GL +GAT+AP VRVL+ +  P+++PISK+LD +LG   A L RRAELKT V+FHGNEAGK
Sbjct:   124 GLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGK 183

Query:   186 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPV 245
             GG+LTHDETTIIAGALEL+EK  KDAMTPIS  F             N I+  GHSRVPV
Sbjct:   184 GGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPV 243

Query:   246 YSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
             Y   PTNIIGL+LVKNLL+++  + +P++ + IRRIPRV E +PLYDILNEFQKG SH+A
Sbjct:   244 YYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMA 303

Query:   306 VVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQN--LRNKLESKDAQQTKK 363
             VV +  +  K   L   N     G  +++   VD+  T   Q   LR K   +  Q+ K 
Sbjct:   304 VVVRQCD--KIHPLPSKN-----GSVKEARVDVDSEGTPTPQERMLRTK---RSLQKWKS 353

Query:   364 VPPATPTFNKRHRGCSYC------ILDFENGPFPDFPSNDEAVGVITM 405
              P    +F    +   +       IL     P P     +EAVG+ITM
Sbjct:   354 FPNRASSFKGGSKSKKWSKDNDADILQLNGNPLPKLAEEEEAVGIITM 401

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 5.4e-96, Sum P(2) = 5.4e-96
 Identities = 183/331 (55%), Positives = 235/331 (70%)

Query:     5 SDVACCGTMFFVFVLGIIALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKI 64
             +DV CC TMF+V++L  +ALV F                V+LEV+IK+G P DR +A KI
Sbjct:     4 NDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAEKI 63

Query:    65 FPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTR 124
              P+VKNQHLLLCTLLIGN+LAMEALPIF+D L+P W A+LISVTLIL FGEI+PQAVC+R
Sbjct:    64 LPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVCSR 123

Query:   125 YGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAG 184
             YGL++GA ++ +VR+++ +FFP+SYPISK+LDL+LGK H+ LL RAELK+ V  HGNEAG
Sbjct:   124 YGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEAG 183

Query:   185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVP 244
             KGG+LTHDETTII+GAL++++K+AKDAMTP+S+ FS              I + GHSR+P
Sbjct:   184 KGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRIP 243

Query:   245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
             +YS NP  IIG ILVKNL+ V   D   +R + IRR+P+V  ++PLYDILN FQ G SH+
Sbjct:   244 IYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSHM 303

Query:   305 AVVYKDLNEKKEGELFKDNCKKPRGQPEKSS 335
             A V    N         +  K   G P K +
Sbjct:   304 AAVVGTKNHTNTNTPVHE--KSINGSPNKDA 332

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 163/306 (53%), Positives = 207/306 (67%)

Query:    11 GTMFFVFVLGIIA-LVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIFPVVK 69
             G+  ++   GI   LV F                V+LE+L +SG P ++  AA IFPVV+
Sbjct:    31 GSFEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQ 90

Query:    70 NQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
              QH LL TLL+ N++AME LPI+LDKL   + A+++SVT +L FGE++PQA+CTRYGL V
Sbjct:    91 KQHQLLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAV 150

Query:   130 GATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDL 189
             GA    +VR+L+ L +PI++PI KILDL+LG   A L RRA+LK  V+ H  EAGKGG+L
Sbjct:   151 GANFVWLVRILMTLCYPIAFPIGKILDLVLGHNDA-LFRRAQLKALVSIHSQEAGKGGEL 209

Query:   190 THDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGN 249
             THDETTII+GAL+LTEKTA++AMTPI   FS              I+  GHSRVPVYSGN
Sbjct:   210 THDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN 269

Query:   250 PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309
             P N+IGL+LVK+LL+V       +  + IRRIPRV  DMPLYDILNEFQKG SH+A V K
Sbjct:   270 PKNVIGLLLVKSLLTVRPETETLVSAVCIRRIPRVPADMPLYDILNEFQKGSSHMAAVVK 329

Query:   310 DLNEKK 315
                + K
Sbjct:   330 VKGKSK 335

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 182/432 (42%), Positives = 253/432 (58%)

Query:    11 GTMFFVFVLGIIA-LVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIFPVVK 69
             G+ ++  V+G+   LV F                V+LE+L +SG   ++  AA I PVVK
Sbjct:    29 GSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAAILPVVK 88

Query:    70 NQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
              QH LL TLL+ N+ AMEALPI LDK+  P+ AVL+SVT +L FGEI+PQA+C+RYGL V
Sbjct:    89 KQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAV 148

Query:   130 GATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDL 189
             GA    +VR+L+ + +PI+YPI K+LD ++G     L RRA+LK  V+ H  EAGKGG+L
Sbjct:   149 GANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDT-LFRRAQLKALVSIHSQEAGKGGEL 207

Query:   190 THDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGN 249
             TH+ET II+GAL+L++KTA++AMTPI   FS              I++ GHSR+PVY GN
Sbjct:   208 THEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGN 267

Query:   250 PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309
             P NIIGL+LVK+LL+V      P+  + IR+IPRV  DMPLYDILNEFQKG SH+A V K
Sbjct:   268 PKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHMAAVVK 327

Query:   310 --DLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQ-QTKKVPP 366
               D ++K   +L  +      G+  K + K           L++  ES D      KVP 
Sbjct:   328 VKDKDKKNNMQLLSN------GETPKENMKFYQSSNLTAPLLKH--ESHDVVVDIDKVPK 379

Query:   367 ATPTFNKRHRGCSYCILDFENGPFP-DFP----SNDEA--VGVITMXXXXXXXXXXXXXX 419
                  + ++RG ++     +NG    D P     N++A  +G+IT+              
Sbjct:   380 -----HVKNRGRNFQ----QNGTVTRDLPCLLEDNEDAEVIGIITLEDVFEELLQAEIVD 430

Query:   420 XXXXYVNIHNRL 431
                 Y+++H R+
Sbjct:   431 ETDVYIDVHKRV 442

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 182/437 (41%), Positives = 254/437 (58%)

Query:     2 ATDSDVACCGTMFFVFVLGIIA-LVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIH 60
             A  S+    G++ ++   GI   LV F                V+LE+L +SG P+++  
Sbjct:    21 ALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQ 80

Query:    61 AAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQA 120
             +A IFPVV+ QH LL TLL+ N+LAME LPI+LDK+   + A+++SVT +L  GE++PQA
Sbjct:    81 SAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQA 140

Query:   121 VCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHG 180
             +CTRYGL VGA +  +VR+L+ L +PIS+PI+K+LD +LG     L RRA+LK  V+ HG
Sbjct:   141 ICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGHNDP-LFRRAQLKALVSIHG 199

Query:   181 NEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGH 240
               AGKGG+LTHDETTII+GAL+LTEKTA++AMTPI   FS            + I   GH
Sbjct:   200 EAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGH 259

Query:   241 SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKG 300
             SRVPVYS NP N+IGL+LVK+LL+V       +  + IRRIPRV  +MPLYDILNEFQKG
Sbjct:   260 SRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKG 319

Query:   301 HSHIAVVYKDLNEKKEGE---LFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKD 357
              SH+A V K +  K +G    L ++N     G+   SS   +  +TA    L  K E   
Sbjct:   320 SSHMAAVVK-VKGKSKGHPSTLHEENS----GESNVSSNNSE--LTAP---LLLKREGNH 369

Query:   358 AQQTKKVPPAT-PTFNKR--HRGCSYCILDFENGPFPDFPSNDEAVGVITMXXXXXXXXX 414
                  ++  A   +F      +G S+   + E+G         + +G+IT+         
Sbjct:   370 DSVIVRIDKANGQSFISEAGRQGFSHTSEEIEDG---------DVIGIITLEDVFEELLQ 420

Query:   415 XXXXXXXXXYVNIHNRL 431
                      Y+++H R+
Sbjct:   421 EEIVDETDEYIDVHKRI 437

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000052186 AN0789 [Emericella nidulans (taxid:162425)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 111/290 (38%), Positives = 171/290 (58%)

Query:    22 IALVCFXXXXXXXXXXXXXXXXVDLEVLIKSGRPQDRIHAAKIFPVV-KNQHLLLCTLLI 80
             +ALV                  V L+VL  SG   ++ HA  +  ++ K +H +L TLL+
Sbjct:    51 VALVLIGGVFAGLTIALMGQDAVHLQVLATSGDGPEQKHARTVLGLISKGKHWVLVTLLL 110

Query:    81 GNSLAMEALPIFLDK-LVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRV 139
             GN +  E+LPI LDK L   W AVL S  LI++FGEI+PQ+VC RYGL +GA ++P V V
Sbjct:   111 GNVVVNESLPIVLDKTLGGGWPAVLGSTVLIVIFGEIIPQSVCVRYGLPIGAYLSPAVLV 170

Query:   140 LLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD-LTHDETTIIA 198
             L+  F P+++P +++LD +LG+ H  + +++ LKT V  H +   +  + LT DE TII 
Sbjct:   171 LMYAFAPVAWPTARLLDYLLGENHGTVYKKSGLKTLVTLHKSLGSQPAERLTEDEVTIIT 230

Query:   199 GALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYS-GNPTNIIGLI 257
               L+L  K  ++ MTP+   F+              I++ G SR+PV++ GNP + +G++
Sbjct:   231 AVLDLKAKPVREIMTPMESVFTMPSNAVLDEKTMELILSAGFSRIPVHAPGNPGDFLGML 290

Query:   258 LVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
             LVK L++ D  DA  +++ ++  +P  S D    DILN FQ+GHSH+A+V
Sbjct:   291 LVKTLITYDPDDAKRVKEFVLATLPETSPDTSCLDILNYFQEGHSHMALV 340

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 502 (181.8 bits), Expect = 4.9e-48, P = 4.9e-48
 Identities = 106/268 (39%), Positives = 160/268 (59%)

Query:    44 VDLEVLIKSG-RPQDRIHAAKIFPVVKN-QHLLLCTLLIGNSLAMEALPIFLDK-LVPPW 100
             V L+V+  SG  P +R +AA +  ++K  +H +L TLL+ N +  E LPI LD+ L   W
Sbjct:    91 VYLQVIQTSGDSPSERKNAASVLRLLKRGKHWVLVTLLLSNVITNETLPIILDRSLGGGW 150

Query:   101 AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLG 160
              AVL S  LI++FGEI+PQ++C RYGL +GA MAP V  L+ L  P+++P++K+LD +LG
Sbjct:   151 PAVLGSTVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLDRLLG 210

Query:   161 KGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFS 220
             + H  + ++A LKT V  H      G  L  DE TII+  L+L EK+    MTP+   F+
Sbjct:   211 EDHGTIYKKAGLKTLVTLHKTLGEAGEQLNSDEVTIISAVLDLKEKSVGAIMTPMEDVFT 270

Query:   221 XXXXXXXXXXXXNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLSVDYRDAVPLRKMIIR 279
                         + I++ G+SR+P++S  NP N IG++LVK L++ D  D  P+    + 
Sbjct:   271 MSADTVLDEPTMDLILSQGYSRIPIHSPENPRNFIGMLLVKMLITYDPEDCKPVSHFALA 330

Query:   280 RIPRVSEDMPLYDILNEFQKGHSHIAVV 307
              +P    +    DI+N FQ+G SH+ +V
Sbjct:   331 TLPETRPETSCLDIVNFFQEGKSHMVLV 358

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

SGD|S000005421 MAM3 "Protein required for normal mitochondrial morphology" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 483 (175.1 bits), Expect = 5.3e-48, Sum P(2) = 5.3e-48
 Identities = 103/270 (38%), Positives = 157/270 (58%)

Query:    44 VDLEVLIKSGRPQDRIHAAKIFPVV-KNQHLLLCTLLIGNSLAMEALPIFLDK-LVPPWA 101
             V L+V+  SG   ++  A ++  ++ + +H +L TLL+ N +  E LPI LD+ L   W 
Sbjct:    91 VYLKVISTSGSNSEKKLAKRVLDLISRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWQ 150

Query:   102 AVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGK 161
             AV+ S  LI++FGEI+PQ+VC +YGL VGA   P V VL+ L +P++YPI+ +LD MLG+
Sbjct:   151 AVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFCPFVLVLMYLMYPVAYPIATLLDYMLGE 210

Query:   162 GHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSX 221
              H  + +++ LKT V  H     +   LT DE TII+  L+L  K  ++ MTPI   F+ 
Sbjct:   211 DHGTMYKKSGLKTLVTLHRTMGVER--LTKDEVTIISAVLDLKAKRVEEIMTPIENVFTM 268

Query:   222 XXXXXXXXXXXNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR 280
                          I   G SR+P++  N P N IG++LV+ L+S D  D +P+    +  
Sbjct:   269 SADTILDDKTVEKIFNSGFSRIPIFLPNEPNNFIGMLLVRVLISYDPDDCLPISHFPLAT 328

Query:   281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310
             +P  S +    +ILN FQ+G +H+ VV K+
Sbjct:   329 LPETSPNTSCLNILNYFQEGKAHMCVVSKE 358

GO:0005773 "vacuole" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0030026 "cellular manganese ion homeostasis" evidence=IMP

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RY60	Y1733_ARATH	No assigned EC number	0.7299	0.9116	0.8026	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014615001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (524 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	464
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	5e-49
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	7e-32
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	5e-26
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	3e-24
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	9e-20
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	2e-12
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	2e-08

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  172 bits (439), Expect = 5e-49
 Identities = 78/312 (25%), Positives = 147/312 (47%), Gaps = 21/312 (6%)

Query: 12  TMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQ 71
               + +L I+ L+  +   +     L+SL    LE L + G  +    A     +++  
Sbjct: 1   MSLILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERL 56

Query: 72  HLLLCTLLIGNSLA------------MEALPIFLDKLVPPWAAVLISVT-LILMFGEILP 118
           +  L T+ +G +L                L   L+ L    A     +T L ++FGE++P
Sbjct: 57  NRYLSTVQLGITLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVP 116

Query: 119 QAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNF 178
           +++  R    V   +AP +R    L +P+ + +++I + +L       +    L +    
Sbjct: 117 KSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEE 176

Query: 179 HG--NEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIM 236
               +E+ + G L  +E  +I   L+L ++T ++ MTP +   +LDL  T+  + +  I+
Sbjct: 177 LELVSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELIL 235

Query: 237 TMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-VPLRKMIIRRIPRVSEDMPLYDILN 295
             GHSR+PVY G+  NIIG++ VK+LL            ++++R    V E + L D+L 
Sbjct: 236 ESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLE 295

Query: 296 EFQKGHSHIAVV 307
           EF++  +H+A+V
Sbjct: 296 EFREERTHMAIV 307

Length = 429

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  119 bits (302), Expect = 7e-32
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 20/188 (10%)

Query: 18  VLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCT 77
           +L I+ L+  +   +     L+SL    LE L + G       A ++  ++ N   LL T
Sbjct: 3   LLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEGNKG----ARRLLKLLANPDRLLAT 58

Query: 78  LLIGNSLAMEALPIFLDKL--------VPPWAAVLISVTLILMFGEILPQAVCTRYGLTV 129
           LL+GN+LA   L               +    A L+S  LIL+FGEILP+ +  R    +
Sbjct: 59  LLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPERI 118

Query: 130 GATMAPIVRVLLCLFFPISYPISKILDLMLG----KGHAVLLRRAELKTFVNFHGNEAGK 185
              +AP +RVL+ L +P+ + +SK+ +L+L     K     +   EL+  V    +E  +
Sbjct: 119 ALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALV----DEGEE 174

Query: 186 GGDLTHDE 193
            G +  +E
Sbjct: 175 EGVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score =  109 bits (274), Expect = 5e-26
 Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 28/313 (8%)

Query: 13  MFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQH 72
             ++ ++ II L+  +   +G    L +L    L  L K G   +R  A ++  +++   
Sbjct: 1   PTWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQG---NR-GAKRVEKLLEKPD 56

Query: 73  LLLCTLLIGNSLAMEALP----IFLDKLVPPWA---AVLISVTLILMFGEILPQAVCTRY 125
            L+ T+LIGN+L          I   +L        A  +   +IL+F E+LP+ +   Y
Sbjct: 57  RLIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALY 116

Query: 126 GLTVGATMAPIVRVLLCLFFPISYPISKILDL---MLGKGHAV----LLRRAELKTFVNF 178
              V    + I+ +L+ LF P+ + ++ I      +LG         L  + EL+T VN 
Sbjct: 117 PERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNE 176

Query: 179 HGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM 238
            G+E    G +   +  ++ G L+L   T  D M P ++   +D+D     + +  ++  
Sbjct: 177 SGSE----GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHS 231

Query: 239 GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR----VSEDMPLYDIL 294
            H+R+P+Y  +  NIIG++ V++LL +   +     K  I R       V E  PL D L
Sbjct: 232 PHTRIPLYRDDLDNIIGVLHVRDLLRLLN-EKNEFTKEDILRAADEPYFVPEGTPLSDQL 290

Query: 295 NEFQKGHSHIAVV 307
             FQ+   HIA+V
Sbjct: 291 VAFQRNKKHIALV 303

Length = 423

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score =  103 bits (260), Expect = 3e-24
 Identities = 79/303 (26%), Positives = 132/303 (43%), Gaps = 30/303 (9%)

Query: 21  IIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLI 80
           I+ L+  + L++G  +   SL   DL    +    +++I    +  ++     LL T+LI
Sbjct: 2   ILLLLL-SALVSGSEVAFFSLSPTDLNDEEEDNSKKEQI----VINLLDRPKKLLATILI 56

Query: 81  GNSLAMEALPIFLDKLV--------PPWAAVLISVT----LILMFGEILPQAVCTRYGLT 128
            N+    A+ +    L               LI V     LIL+FGEILP+    R  L 
Sbjct: 57  ANNFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLK 116

Query: 129 VGATMAPIVRVLLCLFFPISYP---ISKILDLMLGK-GHAVLLRRAELKTFVNFHGNEAG 184
               MA  + +L  +F PIS P   I+  +    GK    + + +            E  
Sbjct: 117 FAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNISVDQLS-------QALELT 169

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
              D T +E  I+ G +       K  M P    F+LD++ T   + +  I+  G+SR+P
Sbjct: 170 DEEDTTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIE-TSFSEIIPKIIENGYSRIP 228

Query: 245 VYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHI 304
           VY     NI G++ +K+LL    +     + + +R    V E+  L D+L +FQ+  +H+
Sbjct: 229 VYKETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHL 287

Query: 305 AVV 307
           A+V
Sbjct: 288 AIV 290

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 84.1 bits (209), Expect = 9e-20
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-AVPLRKMI 277
            +LD D TL  + L  I   GHSR PVY G+  NIIG++ VK+LL            + +
Sbjct: 4   VALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL 62

Query: 278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 308
           +R    V E  PL D+L E +K  SH+A+V 
Sbjct: 63  LRPPLFVPESTPLDDLLEEMRKERSHMAIVV 93

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP 250
            D   ++ G +++ +   +D M P S+  +L  + TL  + L+ I+   HSR PV S + 
Sbjct: 52  ADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDK 110

Query: 251 TNIIGLILVKNLLSVDYRDAVPLR-KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
            ++ G++L K+LL     DA P   K ++R    V E   +  +L EF+   +H+A+V
Sbjct: 111 DHVEGILLAKDLLPFMRSDAEPFDIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIV 168

Length = 293

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 192 DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT 251
           D   ++ G +++ ++  +D M P S+  +L  + TL  + L+ I+   HSR PV S +  
Sbjct: 53  DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKD 111

Query: 252 NIIGLILVKNLLSVDYRDAVPLR-KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
           +I G+++ K+LL     DA       ++R+   V E   +  +L EF+    H+A+V
Sbjct: 112 HIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIV 168

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	464
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
PRK11573	413	hypothetical protein; Provisional	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.97
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.96
KOG2118	498	consensus Predicted membrane protein, contains two	99.96
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.95
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.74
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.7
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.63
COG2524	294	Predicted transcriptional regulator, contains C-te	99.62
COG4109	432	Predicted transcriptional regulator containing CBS	99.62
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.5
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.48
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.48
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.46
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.45
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.44
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.44
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.44
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.44
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.44
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.43
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.43
COG3620	187	Predicted transcriptional regulator with C-termina	99.42
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.42
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.42
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.41
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.41
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.4
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.4
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.39
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.39
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.38
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.38
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.38
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.38
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.38
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.37
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.37
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.37
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.37
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.37
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.36
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.36
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.36
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.36
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.36
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.36
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.35
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.35
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.35
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.35
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.35
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.35
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.34
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.34
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.34
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.33
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.33
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.32
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.32
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.32
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.32
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.32
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.32
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.32
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.31
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.31
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.31
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.31
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.31
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.3
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.29
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.28
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.28
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.28
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.27
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.26
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.26
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.26
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.25
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.23
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.23
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.22
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.21
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.21
COG0517	117	FOG: CBS domain [General function prediction only]	99.19
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.19
COG2905	610	Predicted signal-transduction protein containing c	99.08
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.97
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.92
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.65
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.58
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.52
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.4
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.35
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.31
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.2
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.98
COG2524	294	Predicted transcriptional regulator, contains C-te	97.87
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.83
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.75
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.71
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.71
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.66
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.66
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.65
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.64
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.62
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.59
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.51
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.49
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.48
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.46
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.45
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.44
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.43
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.42
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.42
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.41
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.4
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.39
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.39
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.38
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.35
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.35
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.35
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.34
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.33
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.33
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.31
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.3
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.29
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.27
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.27
COG0517	117	FOG: CBS domain [General function prediction only]	97.26
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.25
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.25
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.24
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.24
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.24
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.23
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.23
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.22
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.22
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.22
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.21
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.21
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.2
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.18
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.18
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.17
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.17
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.16
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.16
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.16
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.15
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.15
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.14
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.14
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.14
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.11
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.08
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.05
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.02
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.01
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	96.98
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	96.97
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	96.95
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.94
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.91
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.91
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	96.89
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.89
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	96.88
COG3620	187	Predicted transcriptional regulator with C-termina	96.88
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	96.87
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.78
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	96.73
PRK01862	574	putative voltage-gated ClC-type chloride channel C	96.67
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.65
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.59
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	96.49
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	96.45
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	96.4
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.4
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.38
COG2905	610	Predicted signal-transduction protein containing c	96.35
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.33
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.27
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	96.25
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	95.19
COG4109	432	Predicted transcriptional regulator containing CBS	94.96
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	93.44
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	92.52
PRK11573	413	hypothetical protein; Provisional	91.94
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	91.04
COG1253	429	TlyC Hemolysins and related proteins containing CB	88.38
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	86.1
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	85.08

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=5.4e-60  Score=494.15  Aligned_cols=329  Identities=27%  Similarity=0.443  Sum_probs=283.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHHHHh----hh
Q 012416           22 IALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDK----LV   97 (464)
Q Consensus        22 lillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~~~~----~~   97 (464)
                      ++|+++||||||+|+|++|+++.++++++++|++    +|+++++++++|+++|+|+|+|||++|++++.++..    ++
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999999885    577899999999999999999999999876644322    22


Q ss_pred             hh----H----HHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCcccc
Q 012416           98 PP----W----AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML---GKGHAVL  166 (464)
Q Consensus        98 ~~----~----~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l~---g~~~~~~  166 (464)
                      +.    +    +++++.|+++++|||++||++|.+||++++++++||+++++++++|++|+++++++++.   |... ..
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~  156 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN  156 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence            21    1    23455678899999999999999999999999999999999999999999999987654   4432 45


Q ss_pred             CCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEE
Q 012416          167 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY  246 (464)
Q Consensus       167 ~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVv  246 (464)
                      +|++||+.+++.    ++++| ++++|++|++|+++|++++|+|+||||.++++++.+++++ ++++.+.+++|||+|||
T Consensus       157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~  230 (408)
T TIGR03520       157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY  230 (408)
T ss_pred             CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence            899999999984    34456 6899999999999999999999999999999999999998 99999999999999999


Q ss_pred             ecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCccccccccccCCCC
Q 012416          247 SGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (464)
Q Consensus       247 d~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~~~~~~~~~~~~~  326 (464)
                      +++.|+++|+|+.||++....++..++.++ ++++.+||+++++.++++.|++++.|+++|+|||               
T Consensus       231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~---------------  294 (408)
T TIGR03520       231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY---------------  294 (408)
T ss_pred             cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC---------------
Confidence            987789999999999986544333457887 5789999999999999999999999999999996               


Q ss_pred             CCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCCCCCCceEEEEeHH
Q 012416          327 PRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITME  406 (464)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vt~~  406 (464)
                                                                                            |.++||||+|
T Consensus       295 ----------------------------------------------------------------------G~~~GiVT~e  304 (408)
T TIGR03520       295 ----------------------------------------------------------------------GGTSGLVTLE  304 (408)
T ss_pred             ----------------------------------------------------------------------CCEEEEEEHH
Confidence                                                                                  5789999999


Q ss_pred             HHHHHHHhccccccchhhHhhhhhcccccEEEEEehhhHHhHH
Q 012416          407 DVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCMWN  449 (464)
Q Consensus       407 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (464)
                      |++|++. |||.||+|.......+++. ++|++.|.+-+--.|
T Consensus       305 Dileeiv-gei~de~d~~~~~i~~~~~-~~~~v~G~~~l~~l~  345 (408)
T TIGR03520       305 DIIEEIV-GDISDEFDDEDLIYSKIDD-NNYVFEGKTSLKDFY  345 (408)
T ss_pred             HHHHHHh-CCCCCcCCcCccceEEeCC-CeEEEEeccCHHHHH
Confidence            9999999 8999998865444455555 599999987665443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-60  Score=477.26  Aligned_cols=338  Identities=26%  Similarity=0.406  Sum_probs=297.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHH
Q 012416           13 MFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIF   92 (464)
Q Consensus        13 ~~w~~lllilillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~   92 (464)
                      +.|..++++++|+++||||||+|+|++++||.|++.++++|++    +|+++.+++++|++++++++||||++|++.+.+
T Consensus         1 ~~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasal   76 (423)
T COG4536           1 PTWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASAL   76 (423)
T ss_pred             CcchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHH
Confidence            3588888889999999999999999999999999999999996    588899999999999999999999999876544


Q ss_pred             HH----hhhhhH---HHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---hCCC
Q 012416           93 LD----KLVPPW---AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKG  162 (464)
Q Consensus        93 ~~----~~~~~~---~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l---~g~~  162 (464)
                      ..    .+++.+   +|.++.|+++++|+|++||++|+.|||+++...++++.++.++|+|++|+++++++.+   +|..
T Consensus        77 aT~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~  156 (423)
T COG4536          77 ATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGIN  156 (423)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            32    223322   4567778999999999999999999999999999999999999999999999998764   5543


Q ss_pred             ----ccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHc
Q 012416          163 ----HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM  238 (464)
Q Consensus       163 ----~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~  238 (464)
                          .+...++||+|.+++.    ++++|...+++++|+.+++++.+++|.|||+||.++..++.|++.+ ++.+.+.+.
T Consensus       157 ~~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s  231 (423)
T COG4536         157 LDQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHS  231 (423)
T ss_pred             cccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhC
Confidence                2457899999999984    5556778788999999999999999999999999999999999998 999999999


Q ss_pred             CCcEeeEEecCCCcEEEEEEcchhcccccccc-c---ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q 012416          239 GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-V---PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEK  314 (464)
Q Consensus       239 ~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~-~---~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~  314 (464)
                      .|+|+|||.++.|+++|++|.||++++..+.+ .   ++..+ ..+|+|||+++++.+.|..|++++.|+++|||||   
T Consensus       232 ~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY---  307 (423)
T COG4536         232 PHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY---  307 (423)
T ss_pred             CCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc---
Confidence            99999999999999999999999999876543 2   23333 4789999999999999999999999999999997   


Q ss_pred             ccccccccCCCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCCC
Q 012416          315 KEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFP  394 (464)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (464)
                                                                                                      
T Consensus       308 --------------------------------------------------------------------------------  307 (423)
T COG4536         308 --------------------------------------------------------------------------------  307 (423)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCceEEEEeHHHHHHHHHhccccccchhhHhhhhhcccccEEEEEehhhHHh
Q 012416          395 SNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCM  447 (464)
Q Consensus       395 ~~~~~~g~vt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (464)
                        |.+.|+||+||++|+|+ ||+.||.|...+-..+.++ +||+++|-.-+-=
T Consensus       308 --G~i~GLVTLEDIlEEIV-Gdftde~d~~~~ev~~q~d-gs~iidGs~~iRd  356 (423)
T COG4536         308 --GDIQGLVTLEDILEEIV-GDFTDEHDTLAKEVIPQSD-GSFIIDGSANVRD  356 (423)
T ss_pred             --CcEEeeeeHHHHHHHHh-ccccccCcccchhhcccCC-CcEEEeCCCcHHH
Confidence              57999999999999999 8999999998777776666 5999999876543

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=3.3e-59  Score=488.62  Aligned_cols=326  Identities=20%  Similarity=0.314  Sum_probs=279.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHHHHh----hhh--
Q 012416           25 VCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDK----LVP--   98 (464)
Q Consensus        25 lllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~~~~----~~~--   98 (464)
                      +++||||||+|+|++|+++.++++++++|++    +|+++++++++|+++|+|+|+|||++|++.+.+...    +++  
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4679999999999999999999999999986    577899999999999999999999999876544322    222  


Q ss_pred             -hHHHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---hCCCc----cccCCHH
Q 012416           99 -PWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGH----AVLLRRA  170 (464)
Q Consensus        99 -~~~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l---~g~~~----~~~~s~e  170 (464)
                       .++++++.|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++.+   +|.+.    ...+|++
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence             223556678899999999999999999999999999999999999999999999988764   45432    2468999


Q ss_pred             HHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCC
Q 012416          171 ELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP  250 (464)
Q Consensus       171 EL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~  250 (464)
                      ||+.+++.    +.  +.++++|++|++|+++|++++|+|+|+||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus       158 El~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            99999984    22  259999999999999999999999999999999999999998 999999999999999999888


Q ss_pred             CcEEEEEEcchhccccccc-c---cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCccccccccccCCCC
Q 012416          251 TNIIGLILVKNLLSVDYRD-A---VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK  326 (464)
Q Consensus       251 d~iVGIVt~kDLl~~~~~~-~---~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~~~~~~~~~~~~~  326 (464)
                      |+++|+||.||++....++ .   ..+.++ .+|+.+||+++++.++++.|++++.|+|+|+|||               
T Consensus       231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy---------------  294 (413)
T PRK11573        231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY---------------  294 (413)
T ss_pred             CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC---------------
Confidence            9999999999998643221 1   234455 6899999999999999999999999999999997               


Q ss_pred             CCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCCCCCCceEEEEeHH
Q 012416          327 PRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITME  406 (464)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vt~~  406 (464)
                                                                                            |..+|+||+|
T Consensus       295 ----------------------------------------------------------------------G~~~GiVTle  304 (413)
T PRK11573        295 ----------------------------------------------------------------------GDIQGLVTVE  304 (413)
T ss_pred             ----------------------------------------------------------------------CCeEEEeeHH
Confidence                                                                                  5789999999


Q ss_pred             HHHHHHHhccccccchhh-HhhhhhcccccEEEEEehhhHHhHH
Q 012416          407 DVIEELLQEEILDETDEY-VNIHNRLSFMFSFVFYFFIFLCMWN  449 (464)
Q Consensus       407 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  449 (464)
                      |++|+|+ |||.||+|.. .....+++. ++|+++|.+-+-=.|
T Consensus       305 DilEeiv-Gei~de~d~~~~~~i~~~~~-~~~~v~G~~~l~d~~  346 (413)
T PRK11573        305 DILEEIV-GDFTTSMSPTLAEEVTPQND-GSVIIDGTANVREIN  346 (413)
T ss_pred             HHHHHHh-CCCCcccCcccccceEEecC-CEEEEEeeeEHHHHH
Confidence            9999999 8999998863 233455565 599999987654433

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=2.3e-55  Score=462.19  Aligned_cols=341  Identities=29%  Similarity=0.469  Sum_probs=291.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 012416           14 FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFL   93 (464)
Q Consensus        14 ~w~~lllilillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~~   93 (464)
                      .+..++++++|+++|||||++|+|++|++|.|+++++++|++    +|..+++++++++++++++++|+|++++..+.+.
T Consensus         3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~   78 (429)
T COG1253           3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAVG   78 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence            455667888899999999999999999999999999999875    5778899999999999999999999987765443


Q ss_pred             Hhhh----hhHH---------HHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhC
Q 012416           94 DKLV----PPWA---------AVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLG  160 (464)
Q Consensus        94 ~~~~----~~~~---------a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l~g  160 (464)
                      ...+    ..|.         .+++.|+++++|||++||++|+++|++++++.++++++++++++|++|+++++++.+++
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~  158 (429)
T COG1253          79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR  158 (429)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221    1111         14566888999999999999999999999999999999999999999999999987653


Q ss_pred             ---CC----ccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHH
Q 012416          161 ---KG----HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLN  233 (464)
Q Consensus       161 ---~~----~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~  233 (464)
                         ..    .....++++++ +++    ++.+.|.++++|++|++++|+|++++|+++||||+++++++.+.+++ ++.+
T Consensus       159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~  232 (429)
T COG1253         159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE  232 (429)
T ss_pred             HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence               22    22345677777 665    56788999999999999999999999999999999999999999998 9999


Q ss_pred             HHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc--cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 012416          234 AIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL  311 (464)
Q Consensus       234 ~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~--~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDey  311 (464)
                      .+.+++|||+|||+++.|+++|++|.||++.....++  ...... .+|+++||+++++.++|++||+++.|+|+|+|||
T Consensus       233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy  311 (429)
T COG1253         233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY  311 (429)
T ss_pred             HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence            9999999999999988899999999999998766552  222223 4699999999999999999999999999999997


Q ss_pred             CccccccccccCCCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCC
Q 012416          312 NEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFP  391 (464)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (464)
                                                                                                      
T Consensus       312 --------------------------------------------------------------------------------  311 (429)
T COG1253         312 --------------------------------------------------------------------------------  311 (429)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCceEEEEeHHHHHHHHHhccccccchh--hHhhhhhcccccEEEEEehhhHHhHHHHHH
Q 012416          392 DFPSNDEAVGVITMEDVIEELLQEEILDETDE--YVNIHNRLSFMFSFVFYFFIFLCMWNLLID  453 (464)
Q Consensus       392 ~~~~~~~~~g~vt~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (464)
                           |.+.|+||+||++|+|. |||.||+|.  ...++.+ ..+. |.+.|.+-+.=.|-.++
T Consensus       312 -----G~~~GlVTleDIiEeIv-Gei~de~d~~~~~~~~~~-~~~~-~~v~G~~~l~e~~~~l~  367 (429)
T COG1253         312 -----GGVEGLVTLEDIIEEIV-GEIPDEHDEDEEEDIIQR-DDDG-WLVDGRVPLEELEELLG  367 (429)
T ss_pred             -----CCeEEEeEHHHHHHHHh-CCCcCcccccccccceEe-cCCc-EEEeccccHHHHHHHhC
Confidence                 57899999999999999 899999987  4455554 3443 99999988876665544

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.97  E-value=1.1e-29  Score=255.02  Aligned_cols=199  Identities=25%  Similarity=0.425  Sum_probs=168.9

Q ss_pred             HHhhCCCccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHH
Q 012416          156 DLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAI  235 (464)
Q Consensus       156 ~~l~g~~~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m  235 (464)
                      ..++|..+   .|++||+.+++    ++.++|.++++|+++++++|+|++++|+++|+||.++++++.+++++ ++++.+
T Consensus        24 ~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i   95 (292)
T PRK15094         24 SQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI   95 (292)
T ss_pred             HHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence            33455442   58999999998    46678999999999999999999999999999999999999999998 999999


Q ss_pred             HHcCCcEeeEEecCCCcEEEEEEcchhcccccc--cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q 012416          236 MTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE  313 (464)
Q Consensus       236 ~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~  313 (464)
                      .+++|+++|||+++.|+++|+|+.+|++.....  ...++.++ ++++++|++++++.++++.|++++.+++||+|+|  
T Consensus        96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~--  172 (292)
T PRK15094         96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEF--  172 (292)
T ss_pred             HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC--
Confidence            999999999998766899999999999864432  12347887 5777899999999999999999999999999995  


Q ss_pred             cccccccccCCCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCC
Q 012416          314 KKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDF  393 (464)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (464)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (292)
T PRK15094        173 --------------------------------------------------------------------------------  172 (292)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCceEEEEeHHHHHHHHHhccccccchhhH-hhhhhcccccEEEEEehhhHHhHHH
Q 012416          394 PSNDEAVGVITMEDVIEELLQEEILDETDEYV-NIHNRLSFMFSFVFYFFIFLCMWNL  450 (464)
Q Consensus       394 ~~~~~~~g~vt~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  450 (464)
                         |.++|+||++|++|+|+ |+|.||+|... ....+++. ++|++.|-+-+--.|-
T Consensus       173 ---G~viGiVTleDIle~iv-Gei~de~d~~~~~~i~~~~~-~~~~v~G~~~l~dl~~  225 (292)
T PRK15094        173 ---GGVSGLVTIEDILELIV-GEIEDEYDEEDDIDFRQLSR-HTWTVRALASIEDFNE  225 (292)
T ss_pred             ---CCEEEEeEHHHHHHHHh-CCCccccccccccccEEeCC-CeEEEEeccCHHHHHH
Confidence               57999999999999999 89999998543 22344555 5999999887654443

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.6e-29  Score=240.06  Aligned_cols=202  Identities=24%  Similarity=0.447  Sum_probs=175.4

Q ss_pred             HHHHHHHhhCCCccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHH
Q 012416          151 ISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLD  230 (464)
Q Consensus       151 l~~l~~~l~g~~~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~ee  230 (464)
                      +.++++.++..+   +-+++||-.++.    .+++.+.++.+-+.|++++++..+.+|+|||+||+++++++.+.++. +
T Consensus        19 fe~L~~~~f~gE---pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~   90 (293)
T COG4535          19 FERLLSQLFHGE---PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E   90 (293)
T ss_pred             HHHHHHHHhcCC---CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence            444554555443   347899999997    56778999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEE
Q 012416          231 TLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY  308 (464)
Q Consensus       231 al~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VV  308 (464)
                      .+..+.++.||||||+.++.|++.||++.|||++.....  ...+.++ .||+.+||++..+..+|+.|+.++.|||+|+
T Consensus        91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi  169 (293)
T COG4535          91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI  169 (293)
T ss_pred             HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence            999999999999999998889999999999999876543  4678886 8999999999999999999999999999999


Q ss_pred             ecCCccccccccccCCCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCC
Q 012416          309 KDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENG  388 (464)
Q Consensus       309 DeyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (464)
                      |||                                                                             
T Consensus       170 DEf-----------------------------------------------------------------------------  172 (293)
T COG4535         170 DEF-----------------------------------------------------------------------------  172 (293)
T ss_pred             ecc-----------------------------------------------------------------------------
Confidence            997                                                                             


Q ss_pred             CCCCCCCCCceEEEEeHHHHHHHHHhccccccchhh--HhhhhhcccccEEEEEehhhHHhHH
Q 012416          389 PFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEY--VNIHNRLSFMFSFVFYFFIFLCMWN  449 (464)
Q Consensus       389 ~~~~~~~~~~~~g~vt~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  449 (464)
                              |.+-|.||.||++|+|+ |||.||+|+.  .+ ...++. +.|.+.+..=+-=+|
T Consensus       173 --------GgVsGLVTIEDiLEqIV-GdIEDE~Deee~~d-I~~ls~-~~~~VrALT~IedFN  224 (293)
T COG4535         173 --------GGVSGLVTIEDILEQIV-GDIEDEYDEEEDAD-IRQLSR-HTWRVRALTEIEDFN  224 (293)
T ss_pred             --------CCeeeeEEHHHHHHHHh-cccccccchhhhhh-hHhhcC-CceEEEecccHHHHH
Confidence                    57899999999999999 8999999886  44 334555 588888877665555

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=99.96  E-value=3.1e-30  Score=274.73  Aligned_cols=421  Identities=42%  Similarity=0.575  Sum_probs=329.7

Q ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHH-hHHhHchHHhhcchhHHHHHHHHH
Q 012416            5 SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI-HAAKIFPVVKNQHLLLCTLLIGNS   83 (464)
Q Consensus         5 ~~~~~~~~~~w~~lllilillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~-~A~~ll~L~~~~~~~L~tilIGn~   83 (464)
                      .+..||.++++...-.+++++++++++||.+.++.+.+-..++.+.+.|...+++ .++++....++.+.+|+|++++|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~   82 (498)
T KOG2118|consen    3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS   82 (498)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence            4567899888877777777999999999999999999999999999999887764 577777888889999999999999


Q ss_pred             HHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCC
Q 012416           84 LAMEA-LPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKG  162 (464)
Q Consensus        84 i~~i~-l~~~~~~~~~~~~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l~g~~  162 (464)
                      +++.+ +..+.......|.++.+++..+++|||++|+.++.+|.-.+..-+.|+.+++.++++|+.|+++++ +..+|..
T Consensus        83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~  161 (498)
T KOG2118|consen   83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN  161 (498)
T ss_pred             hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence            99988 777777777778888899999999999999999999999999999999999999999999999988 7777876


Q ss_pred             ccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcE
Q 012416          163 HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSR  242 (464)
Q Consensus       163 ~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr  242 (464)
                      ......+.++..++..+++|+.+ |.+..+|..++.+++++.++.++++|+|-.++..++.+..+.++....+.++||||
T Consensus       162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr  240 (498)
T KOG2118|consen  162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR  240 (498)
T ss_pred             cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence            66677789999999999988866 99999999999999999999999999999999999999999877788888999999


Q ss_pred             eeEEecCCCcEEEEEEcchhcccc----cccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q 012416          243 VPVYSGNPTNIIGLILVKNLLSVD----YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGE  318 (464)
Q Consensus       243 ~PVvd~d~d~iVGIVt~kDLl~~~----~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~~~~~  318 (464)
                      +||++++..+.+|.+-...++...    .....++.+.+.++.+.+|+++++.+.++.|++.+.|++.|...++.. ...
T Consensus       241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~-~~~  319 (498)
T KOG2118|consen  241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDI-FVL  319 (498)
T ss_pred             eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEecCCcce-eeE
Confidence            999987767778876666666554    333567888888999999999999999999999999999998743211 100


Q ss_pred             ccccC-----CCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCC
Q 012416          319 LFKDN-----CKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDF  393 (464)
Q Consensus       319 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (464)
                      .-.+.     ...+-.-++ -.+......+..+...+.....    +.........-.++++...+.++.+++..++++-
T Consensus       320 ~l~~~~~~~~ev~de~d~~-~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (498)
T KOG2118|consen  320 TLEDLEEVVKEVEDEEDKE-EIKFETGIFTLRGIGDLDAGAV----TDIDQLGERSPIKERSPRSSESLLDSRKSAFEDL  394 (498)
T ss_pred             eccchhhhcceeccccccc-cchhcccchhhccccccccccc----chhhhhcccccccccCCCCCcccccccccccccc
Confidence            00110     000000000 1111111111111111111000    0000011444567788888888888888888877


Q ss_pred             CCC-CceEEEEeHHHHHHHHHhccccccchhhHhhhhhccc
Q 012416          394 PSN-DEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSF  433 (464)
Q Consensus       394 ~~~-~~~~g~vt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (464)
                      ... .-..|+.|++++++...+++++++.+.+...+++...
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  435 (498)
T KOG2118|consen  395 AELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRN  435 (498)
T ss_pred             ccccccCccceehhhhhccccchhhhccccceechhhhhhh
Confidence            655 4567899999999999989999999988777765543

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.95  E-value=6.9e-27  Score=217.58  Aligned_cols=168  Identities=29%  Similarity=0.486  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHHHHhh-
Q 012416           18 VLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKL-   96 (464)
Q Consensus        18 lllilillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~~~~~-   96 (464)
                      ++++++++++|||||++|+|++++|+.+++.++++|++    +++++.++++||+++++|+++||++++++.+.+.... 
T Consensus         3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~   78 (183)
T PF01595_consen    3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA   78 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667788999999999999999999999999999885    5778999999999999999999999998766443322 


Q ss_pred             ---h----hhHHHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh---CCC--cc
Q 012416           97 ---V----PPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML---GKG--HA  164 (464)
Q Consensus        97 ---~----~~~~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l~---g~~--~~  164 (464)
                         .    +.++++++.++++++|||++||.+|.+||++++.+.+|++++++++++|+++++.++.+.+.   |.+  ++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~  158 (183)
T PF01595_consen   79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED  158 (183)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence               2    22345566778899999999999999999999999999999999999999999999988754   333  24


Q ss_pred             ccCCHHHHHHHHhhcccccccCCCCChhH
Q 012416          165 VLLRRAELKTFVNFHGNEAGKGGDLTHDE  193 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~~~~G~L~~~E  193 (464)
                      +.+|+|||+.+++    +++++|.++++|
T Consensus       159 ~~~s~eel~~lv~----~~~e~G~i~~~E  183 (183)
T PF01595_consen  159 PAVSEEELRSLVE----EGEEEGVIEEEE  183 (183)
T ss_pred             CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence            6789999999998    567889999886

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-16  Score=156.92  Aligned_cols=137  Identities=14%  Similarity=0.253  Sum_probs=113.9

Q ss_pred             cCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhh-------cccccccccccccCcceEEEcCCCChHHHHHHHHHHc
Q 012416          166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGAL-------ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM  238 (464)
Q Consensus       166 ~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl-------~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~  238 (464)
                      .++.+|+...+..    -.|--+|++++-+-+-+-.       .+.+.++.|||++  ++++++.+++++ ++.+.+.+|
T Consensus       202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            5788999888863    2334567777655443332       2568899999996  999999999998 999999999


Q ss_pred             CCcEeeEEecCCCcEEEEEEcchhcccccc---------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416          239 GHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK  309 (464)
Q Consensus       239 ~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVD  309 (464)
                      ++..+||.|++ .+++|+|+.+|+++....         .+..++.+|..++.++.++++..+++..|.+.+.|.+||+|
T Consensus       275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld  353 (382)
T COG3448         275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD  353 (382)
T ss_pred             Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence            99999999976 799999999999873211         14578999988999999999999999999999999999999


Q ss_pred             c
Q 012416          310 D  310 (464)
Q Consensus       310 e  310 (464)
                      +
T Consensus       354 ~  354 (382)
T COG3448         354 A  354 (382)
T ss_pred             C
Confidence            8

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.70  E-value=1.7e-16  Score=168.49  Aligned_cols=135  Identities=14%  Similarity=0.113  Sum_probs=114.2

Q ss_pred             cCCHHHHHHHHhhcccccccC------CCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHH--
Q 012416          166 LLRRAELKTFVNFHGNEAGKG------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMT--  237 (464)
Q Consensus       166 ~~s~eEL~~lve~~~~e~~~~------G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~--  237 (464)
                      .++.+|+..+++.    ..++      +.++++|++.+++++++++.+|+++|++  ++++++++.|+. ++++.+++  
T Consensus        89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            4577888888873    3333      4799999999999999999999999985  889999999998 99999975  


Q ss_pred             ---cCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          238 ---MGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       238 ---~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                         ++...+||+|++ ++++|+|+.+|++....  +.+++++|.++++++++++++.++++.|++++...+||+|+
T Consensus       162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~  234 (449)
T TIGR00400       162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN  234 (449)
T ss_pred             CCccceeEEEEECCC-CeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC
Confidence               233456666654 89999999999986543  34799998878888999999999999999999999999998

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.63  E-value=3.4e-15  Score=158.69  Aligned_cols=133  Identities=14%  Similarity=0.246  Sum_probs=113.8

Q ss_pred             ccCCHHHHHHHHhhcccccccCCCCCh-----hHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC
Q 012416          165 VLLRRAELKTFVNFHGNEAGKGGDLTH-----DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~~~~G~L~~-----~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~  239 (464)
                      ..+|++|+..++..    ....|.|.+     +|++++++++++.+     .|.+  +++++++++|+. ++++.|.+++
T Consensus        43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            56799999999874    334688884     89999999997766     4553  678899999998 9999999999


Q ss_pred             CcEeeEEecCC--CcEEEEEEcchhcccccccccccccccc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          240 HSRVPVYSGNP--TNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       240 ~Sr~PVvd~d~--d~iVGIVt~kDLl~~~~~~~~~V~dIM~-r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++||++++.  ++++|+|+.+|++.... ...++.++|. .+++++++++++.++++.|++++.+.+||+|+
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe  183 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK  183 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence            99999998753  68999999999975432 3457899987 48999999999999999999999999999998

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.62  E-value=1.1e-15  Score=147.70  Aligned_cols=109  Identities=17%  Similarity=0.320  Sum_probs=100.0

Q ss_pred             HHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--ccccc
Q 012416          197 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLR  274 (464)
Q Consensus       197 I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~  274 (464)
                      +..+.+.++.+|+++|++  +++++.+++|+. |+.+.+.+++++..||+|+  |+++|+++..|+..+..++  ...|.
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~  237 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS  237 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence            345667789999999996  889999999998 9999999999999999986  5999999999999887664  56899


Q ss_pred             cccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          275 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       275 dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++|.+.++++.+|+.+.||++.|..+++..++|+|.
T Consensus       238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds  273 (294)
T COG2524         238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS  273 (294)
T ss_pred             HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc
Confidence            999999999999999999999999999999999996

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.62  E-value=2.3e-15  Score=150.85  Aligned_cols=113  Identities=21%  Similarity=0.304  Sum_probs=101.7

Q ss_pred             HHHHHHhhcc-----cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          194 TTIIAGALEL-----TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       194 ~~~I~~vl~l-----~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      ..||..++.=     +=++|.|||+|..+..++..+++++ +..++..++||+||||+|.. .+++|+|+.||+....+.
T Consensus       171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~~  248 (432)
T COG4109         171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKPS  248 (432)
T ss_pred             HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCCC
Confidence            4566665542     3478999999999999999999998 99999999999999999976 899999999999977554


Q ss_pred             cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 ~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                        .++..+|.+.|.+|.+.+++..+.+.|.-.+..++||+|+
T Consensus       249 --t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~  288 (432)
T COG4109         249 --TTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS  288 (432)
T ss_pred             --ccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC
Confidence              5899999999999999999999999999999999999998

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.50  E-value=3.2e-13  Score=144.97  Aligned_cols=132  Identities=17%  Similarity=0.256  Sum_probs=112.2

Q ss_pred             ccCCHHHHHHHHhhcccccccCCCCC-----hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC
Q 012416          165 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~~~~G~L~-----~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~  239 (464)
                      ..+|++|+...+..    +...|.|.     ++++++++++.++     +++|.+  +++++++++++. ++++.|.+++
T Consensus        50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~~--~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVVT--DPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhh-----hhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence            46799999998863    34457777     4788899988864     567764  778899999998 9999999999


Q ss_pred             CcEeeEEecCCCcEEEEEEcchhcccccccccccccccc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       240 ~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~-r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++||++++ ++++|+|+.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|+
T Consensus       118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe  187 (486)
T PRK05567        118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD  187 (486)
T ss_pred             CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999865 8999999999997543 22457899987 78899999999999999999999999999998

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.48  E-value=1.8e-13  Score=139.29  Aligned_cols=105  Identities=19%  Similarity=0.124  Sum_probs=91.3

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----cccccccccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIR  279 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r  279 (464)
                      ...+|+|+|++..+++++++++|+. ++++.|.+++++.+||++++ |+++|+|+.+|+.+....+    ..++.++|.+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~  277 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP  277 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence            5678999999645788999999998 99999999888888888765 8999999999987654321    3579999989


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++.++++++++.++++.|.+++.+.+||+|+
T Consensus       278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~  308 (326)
T PRK10892        278 GGIRVRPGILAVDALNLMQSRHITSVLVADG  308 (326)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC
Confidence            9999999999999999999999999999986

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.48  E-value=3.9e-13  Score=114.31  Aligned_cols=92  Identities=20%  Similarity=0.374  Sum_probs=80.8

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--ccccccccccCCcEecCCCCHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL  294 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r~~~~V~e~~~l~eaL  294 (464)
                      ++++++++.++. ++.+.|.+++++++||++++ ++++|+++.+|+.+...+.  ..++.++|..++.++++++++.+++
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al   79 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL   79 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence            457889999998 99999999999999999865 8999999999998643222  2468899888899999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 012416          295 NEFQKGHSHIAVVYKD  310 (464)
Q Consensus       295 ~~m~~~~~~~a~VVDe  310 (464)
                      +.|.+++.+.+||+|+
T Consensus        80 ~~m~~~~~~~lpVvd~   95 (111)
T cd04603          80 RIFRETEPPVVAVVDK   95 (111)
T ss_pred             HHHHHcCCCeEEEEcC
Confidence            9999999999999997

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=6e-13  Score=114.37  Aligned_cols=92  Identities=16%  Similarity=0.223  Sum_probs=76.1

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--c---ccccc------ccccCCcEec
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A---VPLRK------MIIRRIPRVS  285 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~---~~V~d------IM~r~~~~V~  285 (464)
                      ++.++++++++. ++.+.|.+++++++||++++ ++++|+++.+|++.....+  .   .++.+      +|..++.+++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence            567899999998 99999999999999999864 8999999999998643221  1   11222      2335578899


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          286 EDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       286 e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~l~~~~~~m~~~~~~~l~Vvd~  104 (120)
T cd04641          80 PDDCLRTIFDLIVKARVHRLVVVDE  104 (120)
T ss_pred             CCCcHHHHHHHHHhcCccEEEEECC
Confidence            9999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.45  E-value=8.8e-13  Score=110.88  Aligned_cols=92  Identities=12%  Similarity=0.260  Sum_probs=81.3

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~  296 (464)
                      ++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|++........++.++|.+++.++++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   80 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK   80 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence            567889999998 99999999999999999875 8999999999998654333346888887889999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 012416          297 FQKGHSHIAVVYKD  310 (464)
Q Consensus       297 m~~~~~~~a~VVDe  310 (464)
                      |.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~~Vv~~   94 (110)
T cd04605          81 MERHNISALPVVDA   94 (110)
T ss_pred             HHHhCCCEEeEECC
Confidence            99999999999987

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=8.7e-13  Score=112.53  Aligned_cols=92  Identities=15%  Similarity=0.198  Sum_probs=81.0

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----cccccccccccCCcEecCCCCHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  291 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~dIM~r~~~~V~e~~~l~  291 (464)
                      ++.++++++++. ++.+.|.++++..+||++++ ++++|+++.+|+.+....     ...++.++|.+++.++++++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   79 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH   79 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence            356789999998 99999999999999999875 899999999998864321     13578899888999999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 012416          292 DILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       292 eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.|.+++.+.+||+|+
T Consensus        80 ~a~~~m~~~~~~~lpVvd~   98 (114)
T cd04619          80 DVWQVMKQRGLKNIPVVDE   98 (114)
T ss_pred             HHHHHHHHcCCCeEEEECC
Confidence            9999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.44  E-value=3.5e-13  Score=136.60  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=90.4

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---cccccccccccCC
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRI  281 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---~~~~V~dIM~r~~  281 (464)
                      ..+|+++|++..++.++++++++. ++.+.|.+++.+.+||+|++ ++++|+|+.+|+.+....   ...++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            467999998643488999999998 99999999999999999875 899999999998754322   2356889998889


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++++.++++.|.+++...+||+|+
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  302 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDE  302 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            99999999999999999999999999997

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.1e-12  Score=110.26  Aligned_cols=92  Identities=12%  Similarity=0.202  Sum_probs=80.3

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----ccccccccccCCcEecCCCCHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLY  291 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~~~V~dIM~r~~~~V~e~~~l~  291 (464)
                      ++++++++.++. ++.+.+.+++++++||++++ ++++|+++.+|++......     ..++.++|.+++.++++++++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   79 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD   79 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence            467789999998 99999999999999999875 7999999999998653321     3468888878889999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 012416          292 DILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       292 eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.|.+.+.+.+||+|+
T Consensus        80 ~~l~~~~~~~~~~~~Vv~~   98 (113)
T cd04623          80 EAMALMTERRFRHLPVVDG   98 (113)
T ss_pred             HHHHHHHHcCCCEeEEEeC
Confidence            9999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=9.2e-13  Score=111.15  Aligned_cols=92  Identities=14%  Similarity=0.269  Sum_probs=80.6

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---ccccccccccCCcEecCCCCHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI  293 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~~~V~dIM~r~~~~V~e~~~l~ea  293 (464)
                      ++.+++.++++. ++++.+.+++++++||++++ ++++|+++.+|++......   ..++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            466789999998 99999999999999999875 8999999999998654322   246888888888999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 012416          294 LNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       294 L~~m~~~~~~~a~VVDe  310 (464)
                      ++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~Vv~~   96 (111)
T cd04626          80 LDIMREKQIGRLPVVDD   96 (111)
T ss_pred             HHHHHHcCCCeeeEeEC
Confidence            99999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.3e-12  Score=109.90  Aligned_cols=80  Identities=15%  Similarity=0.314  Sum_probs=72.1

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~  296 (464)
                      +++++++++++. ++.+.|.+++++.+||++++.++++|+++.+|+.+...             +.++++++++.++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~   67 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL   67 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence            578899999998 99999999999999999864478999999999985321             6789999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 012416          297 FQKGHSHIAVVYKD  310 (464)
Q Consensus       297 m~~~~~~~a~VVDe  310 (464)
                      |.+++.+.+||+|+
T Consensus        68 m~~~~~~~lpVvd~   81 (98)
T cd04618          68 LLKNKIHRLPVIDP   81 (98)
T ss_pred             HHHCCCCEeeEEEC
Confidence            99999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.43  E-value=1.3e-12  Score=110.04  Aligned_cols=90  Identities=18%  Similarity=0.228  Sum_probs=80.7

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~  296 (464)
                      ++.++++++++. ++.+.+.+++++.+||++++ ++++|+++.+|++....  ..++.++|..++.++++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~v~~~~~l~~~~~~   78 (108)
T cd04596           3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKDP--DTTIEKVMTKNPITVNPKTSVASVAHM   78 (108)
T ss_pred             ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhcccc--cccHHHHhcCCCeEECCCCCHHHHHHH
Confidence            577899999998 99999999999999999865 89999999999986432  347889987888999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 012416          297 FQKGHSHIAVVYKD  310 (464)
Q Consensus       297 m~~~~~~~a~VVDe  310 (464)
                      |.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~Vv~~   92 (108)
T cd04596          79 MIWEGIEMLPVVDD   92 (108)
T ss_pred             HHHcCCCeeeEEcC
Confidence            99999999999997

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.7e-12  Score=110.43  Aligned_cols=93  Identities=18%  Similarity=0.258  Sum_probs=80.3

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----cccccccccccCCcEecCCCCHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  291 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~dIM~r~~~~V~e~~~l~  291 (464)
                      ++.++++++++. ++++.|.+++++.+||++++.++++|+++.+|+++....     ...++.++|.++++++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK   80 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence            567899999998 999999999999999998633799999999999863211     12468888888899999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 012416          292 DILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       292 eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~~~~~~~Vvd~   99 (114)
T cd04630          81 YCARLMERTNIRRAPVVEN   99 (114)
T ss_pred             HHHHHHHHcCCCEeeEeeC
Confidence            9999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.42  E-value=9.4e-13  Score=119.34  Aligned_cols=119  Identities=22%  Similarity=0.324  Sum_probs=95.3

Q ss_pred             cCCCCChhH---HHHHHHhhcc--cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEc
Q 012416          185 KGGDLTHDE---TTIIAGALEL--TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILV  259 (464)
Q Consensus       185 ~~G~L~~~E---~~~I~~vl~l--~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~  259 (464)
                      +.|.+++.-   +++++...+-  ..++++.+|+.  +++.+.+++++. ++++.|.++|+|.+||+++  |+++|-|+.
T Consensus        39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE  113 (187)
T COG3620          39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE  113 (187)
T ss_pred             hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence            347776654   3333333333  35789999984  899999999998 9999999999999999986  799999999


Q ss_pred             chhccccccc-----ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          260 KNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       260 kDLl~~~~~~-----~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++.+...++     +..++++|-.+.++|++++++..+-..+..+  +.+.|+++
T Consensus       114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~  167 (187)
T COG3620         114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVEN  167 (187)
T ss_pred             HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEeC
Confidence            9998875432     5678999999999999999999998888877  56667643

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.42  E-value=1.5e-12  Score=110.66  Aligned_cols=92  Identities=16%  Similarity=0.218  Sum_probs=79.9

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCCCCHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  292 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~~~l~e  292 (464)
                      ++.++++++++. ++.+.|.+.+++++||++++ ++++|+++.+|++......    ..++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   79 (115)
T cd04593           2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH   79 (115)
T ss_pred             CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence            345779999998 99999999999999999875 8999999999998654321    23478888888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 012416          293 ILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       293 aL~~m~~~~~~~a~VVDe  310 (464)
                      +++.|.+++.+.+||+|+
T Consensus        80 ~l~~~~~~~~~~~~Vvd~   97 (115)
T cd04593          80 ALDRMASRGLRQLPVVDR   97 (115)
T ss_pred             HHHHHHHcCCceeeEEeC
Confidence            999999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.42  E-value=1.4e-12  Score=111.94  Aligned_cols=92  Identities=16%  Similarity=0.343  Sum_probs=80.6

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--------------ccccccccccCCc
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP  282 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--------------~~~V~dIM~r~~~  282 (464)
                      ++.+++++.++. ++.+.|.+++++++||++++ ++++|+|+.+|++......              ..++.++|.+++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            567899999998 99999999999999999875 8999999999997543221              2368888888899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~  108 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDE  108 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence            9999999999999999999999999997

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.41  E-value=1.8e-12  Score=109.18  Aligned_cols=93  Identities=41%  Similarity=0.637  Sum_probs=79.5

Q ss_pred             cceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc--cccccccccCCcEecCCCCHHHH
Q 012416          216 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDI  293 (464)
Q Consensus       216 ~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~--~~V~dIM~r~~~~V~e~~~l~ea  293 (464)
                      ++++++++++++. ++.+.|.+.+++.+||++++.++++|+++.+|++.....+.  .++.++ ++++.++++++++.++
T Consensus         1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~   78 (111)
T cd04590           1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL   78 (111)
T ss_pred             CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence            3678899999998 99999999999999999764378999999999987654321  346665 5788899999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 012416          294 LNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       294 L~~m~~~~~~~a~VVDe  310 (464)
                      ++.|.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~Vv~~   95 (111)
T cd04590          79 LEEMRKERSHMAIVVDE   95 (111)
T ss_pred             HHHHHhcCCcEEEEEEC
Confidence            99999999999999998

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=1.9e-12  Score=109.18  Aligned_cols=92  Identities=14%  Similarity=0.273  Sum_probs=80.1

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---ccccccccccCCcEecCCCCHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI  293 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~~~V~dIM~r~~~~V~e~~~l~ea  293 (464)
                      ++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++.....   ..++.++|.++++.+++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence            356789999998 99999999999999999876 8999999999997653321   346888888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 012416          294 LNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       294 L~~m~~~~~~~a~VVDe  310 (464)
                      ++.|.+++...+||+|+
T Consensus        80 ~~~~~~~~~~~~~Vv~~   96 (112)
T cd04624          80 AKLMRKNNIRHHLVVDK   96 (112)
T ss_pred             HHHHHHcCccEEEEEcC
Confidence            99999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=2.3e-12  Score=110.85  Aligned_cols=93  Identities=15%  Similarity=0.272  Sum_probs=80.3

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---------------ccccccccccCC
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------AVPLRKMIIRRI  281 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---------------~~~V~dIM~r~~  281 (464)
                      ++.+++++.++. ++++.|.+++++++||++++.++++|+|+.+|++....+.               ..++.++|.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            467789999998 9999999999999999986447999999999998643321               236788887889


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++++.++++.|.+.+.+.+||+|+
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~  109 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDD  109 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcC
Confidence            99999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=2.2e-12  Score=108.69  Aligned_cols=92  Identities=24%  Similarity=0.386  Sum_probs=80.4

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--cccccccccccCCcEecCCCCHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL  294 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--~~~~V~dIM~r~~~~V~e~~~l~eaL  294 (464)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+|+.+|+.+....  ...++.++|.++++++++++++.+++
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~   79 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL   79 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence            456789999998 99999998999999999875 899999999999865322  23478888888999999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 012416          295 NEFQKGHSHIAVVYKD  310 (464)
Q Consensus       295 ~~m~~~~~~~a~VVDe  310 (464)
                      +.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~Vv~~   95 (111)
T cd04639          80 RLMQQGGAPAVPVVDG   95 (111)
T ss_pred             HHHHhcCCceeeEEcC
Confidence            9999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.39  E-value=2.8e-12  Score=135.53  Aligned_cols=128  Identities=19%  Similarity=0.222  Sum_probs=111.1

Q ss_pred             CCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC-----Cc
Q 012416          167 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HS  241 (464)
Q Consensus       167 ~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~-----~S  241 (464)
                      +..+..+.++.          .++++|++.++..+.+++.+++.+|+.  ++++++++.|+. ++++++++.+     ..
T Consensus       103 lp~~~~~~lL~----------~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~  169 (451)
T COG2239         103 LPDEVRDELLS----------LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIY  169 (451)
T ss_pred             CCHHHHHHHHH----------hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccc
Confidence            34455555664          478999999999999999999999995  899999999999 9999999554     34


Q ss_pred             EeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          242 RVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       242 r~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+.|+|.+ ++++|+++.++++...++  .++.++|.+.+.+|+++++.+++.+.|++++.-.+||||+
T Consensus       170 ~lyVvD~~-~~L~Gvvsl~~Ll~a~~~--~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~  235 (451)
T COG2239         170 YLYVVDEK-GKLLGVVSLRDLLTAEPD--ELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE  235 (451)
T ss_pred             eEEEECCc-cceEEEeeHHHHhcCCcH--hHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence            56778876 789999999999976554  4899999888999999999999999999999999999998

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=3e-12  Score=111.14  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=77.4

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccc-----------------cccccccc
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV-----------------PLRKMIIR  279 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~-----------------~V~dIM~r  279 (464)
                      +++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++........                 ...+.|.+
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence            567899999998 99999999999999999876 899999999999865432210                 11235567


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++.++++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~  110 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVDE  110 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEECC
Confidence            8889999999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=3.5e-12  Score=109.24  Aligned_cols=92  Identities=20%  Similarity=0.325  Sum_probs=80.2

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-------------cccccccccccCCcE
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-------------DAVPLRKMIIRRIPR  283 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-------------~~~~V~dIM~r~~~~  283 (464)
                      ++.++++++++. ++.+.|.+.+++++||++++ ++++|+++.+|+++....             ...++.++|.+++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence            456789999998 99999999999999999875 899999999998864321             234678888788999


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          284 VSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       284 V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++.++++.|++++.+.+||+|+
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~Vv~~  106 (122)
T cd04803          80 VTPDTPLREAAEIMVENKIGCLPVVDD  106 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence            999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=3.3e-12  Score=110.21  Aligned_cols=93  Identities=16%  Similarity=0.242  Sum_probs=76.6

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--c-----------cccccccccCCcE
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A-----------VPLRKMIIRRIPR  283 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~-----------~~V~dIM~r~~~~  283 (464)
                      ++.++++++++. ++++.|.+++++++||++++.++++|+|+.+|+++.....  .           ....++|.+++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            467789999998 9999999999999999986437899999999987643211  0           1112456778889


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          284 VSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       284 V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++.++++.|.+++.+.+||+|+
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd~  107 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVDN  107 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEECC
Confidence            999999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.38  E-value=4.5e-12  Score=107.45  Aligned_cols=91  Identities=14%  Similarity=0.139  Sum_probs=78.6

Q ss_pred             eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---cccccccccccCCcEecCCCCHHHHH
Q 012416          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDIL  294 (464)
Q Consensus       218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---~~~~V~dIM~r~~~~V~e~~~l~eaL  294 (464)
                      .++++.++++. ++++.|.+.++..+||++++ ++++|+++.+|++.....   ...++.++|..++.++++++++.+++
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL   81 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence            46789999998 99999999999999999865 899999999998754322   13468888877788899999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 012416          295 NEFQKGHSHIAVVYKD  310 (464)
Q Consensus       295 ~~m~~~~~~~a~VVDe  310 (464)
                      +.|.+++.+.+||+|+
T Consensus        82 ~~~~~~~~~~~~Vv~~   97 (113)
T cd04607          82 ALMRERSIRHLPILDE   97 (113)
T ss_pred             HHHHHCCCCEEEEECC
Confidence            9999999999999997

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=3.6e-12  Score=107.95  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=77.0

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---------ccccccccccCCcEecCC
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKMIIRRIPRVSED  287 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---------~~~V~dIM~r~~~~V~e~  287 (464)
                      ++++++.++++. ++++.|.+++++++||++++ ++++|+++.+|+++.....         ..++.++|.+++.+++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~   79 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD   79 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence            567899999998 99999999999999999865 7999999999997654321         246888887789999999


Q ss_pred             CCHHHHHHHHHhCCCcEEEEEec
Q 012416          288 MPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       288 ~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++.++++.|.+.+  .+||+|+
T Consensus        80 ~~l~~a~~~~~~~~--~~~Vv~~  100 (116)
T cd04643          80 ADIEEILHLLIDQP--FLPVVDD  100 (116)
T ss_pred             CCHHHHHHHHhcCC--ceeEEeC
Confidence            99999999998764  5899987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.38  E-value=3.1e-12  Score=136.78  Aligned_cols=102  Identities=15%  Similarity=0.207  Sum_probs=90.9

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP  282 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~  282 (464)
                      +..++++++|++  +++++++++|+. ++++.|.+++++.+||+|++ ++++|+|+.+|+.....  ..++.++|.+++.
T Consensus        86 l~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~--~~~V~diMt~~~i  159 (479)
T PRK07807         86 VAWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDR--FTQVRDVMSTDLV  159 (479)
T ss_pred             Hhhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCcc--CCCHHHhccCCce
Confidence            346678899975  788999999998 99999999999999999865 79999999999975432  3579999999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus       160 tV~~d~sL~eAl~lM~~~~i~~LPVVD~  187 (479)
T PRK07807        160 TLPAGTDPREAFDLLEAARVKLAPVVDA  187 (479)
T ss_pred             EECCCCcHHHHHHHHHhcCCCEEEEEcC
Confidence            9999999999999999999999999997

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.37  E-value=5.5e-12  Score=105.46  Aligned_cols=91  Identities=16%  Similarity=0.272  Sum_probs=80.1

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~  296 (464)
                      ++..++++.++. ++.+.|.+++++.+||++++ ++++|+++.+|++..... ..++.++|.+.+.++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~~~~   79 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-AKSLEDIMLEDVFTVQPDASLRDVLGL   79 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-CCcHhHhhcCCceEECCCCcHHHHHHH
Confidence            566789999998 99999999999999999875 899999999999865322 246888888888999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 012416          297 FQKGHSHIAVVYKD  310 (464)
Q Consensus       297 m~~~~~~~a~VVDe  310 (464)
                      |.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~vv~~   93 (109)
T cd04583          80 VLKRGPKYVPVVDE   93 (109)
T ss_pred             HHHcCCceeeEECC
Confidence            99999999999997

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=3.9e-12  Score=112.82  Aligned_cols=92  Identities=16%  Similarity=0.229  Sum_probs=80.2

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---------------------------
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------------------  269 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---------------------------  269 (464)
                      ++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|++......                           
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            456789999998 99999999999999999875 8999999999998654211                           


Q ss_pred             ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..++.++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~  120 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN  120 (135)
T ss_pred             cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence            23688898888889999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.37  E-value=6.1e-12  Score=104.70  Aligned_cols=89  Identities=10%  Similarity=0.195  Sum_probs=79.0

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~  296 (464)
                      ++.++++++++. ++++.|.+++++.+||++ + ++++|+++.+|+.....  ..++.++|..++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   76 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL   76 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence            456789999998 999999999999999997 4 79999999999987543  246888888889999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 012416          297 FQKGHSHIAVVYKD  310 (464)
Q Consensus       297 m~~~~~~~a~VVDe  310 (464)
                      |.+++...+||+|+
T Consensus        77 ~~~~~~~~~~Vv~~   90 (105)
T cd04599          77 MEEKKIERLPVLRE   90 (105)
T ss_pred             HHHcCCCEeeEEEC
Confidence            99999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.37  E-value=6.9e-12  Score=104.71  Aligned_cols=89  Identities=12%  Similarity=0.054  Sum_probs=78.1

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~  296 (464)
                      ++.+++++.++. ++.+.|.+++++.+||++++ |+++|+++.+|++....   .++.++|.+++..+++++++.++++.
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR   76 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence            566789999998 99999999999999999865 89999999999986532   24778877777889999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 012416          297 FQKGHSHIAVVYKD  310 (464)
Q Consensus       297 m~~~~~~~a~VVDe  310 (464)
                      |.+++.+.+||+|+
T Consensus        77 ~~~~~~~~~~Vv~~   90 (106)
T cd04582          77 MFAHDMSWLPCVDE   90 (106)
T ss_pred             HHHCCCCeeeEECC
Confidence            99999999999998

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.37  E-value=2.7e-12  Score=108.94  Aligned_cols=92  Identities=13%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcC-CcEeeEEecCCCcEEEEEEcchhccccccc--cccccccccc--CCcEecCCCCHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIR--RIPRVSEDMPLY  291 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~-~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r--~~~~V~e~~~l~  291 (464)
                      ++.++++++++. ++.+.|.+++ ++++||++++ ++++|+|+.+|++......  ..++.++|..  +++.+++++++.
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence            466789999998 9999887665 8999999865 8999999999998764322  3467888643  356899999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 012416          292 DILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       292 eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.|++++.+.+||+|+
T Consensus        80 ~a~~~~~~~~~~~l~Vv~~   98 (114)
T cd04801          80 EVLKLLEEQGLDELAVVED   98 (114)
T ss_pred             HHHHHHHHCCCCeeEEEcC
Confidence            9999999999999999987

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.36  E-value=2.8e-12  Score=140.25  Aligned_cols=104  Identities=16%  Similarity=0.198  Sum_probs=90.9

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII  278 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~  278 (464)
                      ++..+|+|+|++  +..+++++++++ ++.+.+.+++++.+||+|++ ++++|+|+.+|+.+...+    ...++.++|.
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            467789999986  567789999998 99999999999999999875 899999999999874211    1356889988


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       279 r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++++++.++++.|.+++.+.+||+|+
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~  551 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVES  551 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC
Confidence            88999999999999999999999999999997

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=5.6e-12  Score=107.95  Aligned_cols=92  Identities=12%  Similarity=0.245  Sum_probs=79.5

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-------------ccccccccccccCCcE
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR  283 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-------------~~~~~V~dIM~r~~~~  283 (464)
                      ++.++++++++. ++.+.|.+.+++.+||++++ ++++|+++.+|++....             ....++.++|.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence            567889999998 99999999999999999865 89999999999975310             1134677888788899


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          284 VSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       284 V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++.++++.|.+++.+.+||+|+
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~Vvd~  106 (122)
T cd04635          80 VTPDDSIATAVELMLEHDIGRLPVVNE  106 (122)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence            999999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=4.8e-12  Score=108.59  Aligned_cols=92  Identities=12%  Similarity=0.244  Sum_probs=79.0

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----ccccccccccc--CCcEecCCCCH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR--RIPRVSEDMPL  290 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~r--~~~~V~e~~~l  290 (464)
                      ++.++++++++. ++.+.|.+++.+.+||++++ ++++|+|+.+|+.+....    ...++.++|.+  +++++++++++
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l   79 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV   79 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence            457889999998 99999999999999999865 789999999998875431    13457788764  67899999999


Q ss_pred             HHHHHHHHhCCCcEEEEEec
Q 012416          291 YDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       291 ~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~lpVvd~   99 (118)
T cd04617          80 LEAAKKLIEHQVDSLPVVEK   99 (118)
T ss_pred             HHHHHHHHHcCCCEeeEEeC
Confidence            99999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.36  E-value=7.4e-12  Score=105.03  Aligned_cols=91  Identities=16%  Similarity=0.242  Sum_probs=79.9

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---cccccccccccCCcEecCCCCHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDI  293 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---~~~~V~dIM~r~~~~V~e~~~l~ea  293 (464)
                      ++.++++++++. ++.+.|.+++++.+||+++  ++++|+++.+|+.+....   ...++.++|.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~   78 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA   78 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence            466789999998 9999999999999999976  799999999999865432   2357888888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 012416          294 LNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       294 L~~m~~~~~~~a~VVDe  310 (464)
                      ++.|.+.+.+.+||+|+
T Consensus        79 l~~~~~~~~~~~~Vv~~   95 (111)
T cd04611          79 RQLMREHGIRHLVVVDD   95 (111)
T ss_pred             HHHHHHcCCeEEEEECC
Confidence            99999999999999987

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.36  E-value=7.7e-12  Score=104.77  Aligned_cols=91  Identities=16%  Similarity=0.248  Sum_probs=78.1

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecC-CCCHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE-DMPLYDILN  295 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e-~~~l~eaL~  295 (464)
                      ++.+++.+.++. ++.+.+.+++++++||++++ |+++|+++.+|++.... ...++.++|..++.++.+ ++++.++++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~   79 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE   79 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence            567789999998 99999999999999999875 89999999999875432 245788887666666666 999999999


Q ss_pred             HHHhCCCcEEEEEec
Q 012416          296 EFQKGHSHIAVVYKD  310 (464)
Q Consensus       296 ~m~~~~~~~a~VVDe  310 (464)
                      .|.+.+.+.+||+|+
T Consensus        80 ~~~~~~~~~~~Vv~~   94 (110)
T cd04601          80 LLHEHKIEKLPVVDD   94 (110)
T ss_pred             HHHHhCCCeeeEEcC
Confidence            999999999999997

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=4.1e-12  Score=110.40  Aligned_cols=92  Identities=17%  Similarity=0.325  Sum_probs=74.9

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc----------cccccccccccccCCcE--e
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----------YRDAVPLRKMIIRRIPR--V  284 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~----------~~~~~~V~dIM~r~~~~--V  284 (464)
                      ++.+++.++++. ++++.|.++++..+||++++ ++++|+++.+|+....          .....++.++|.+++..  +
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~   79 (126)
T cd04640           2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL   79 (126)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence            356789999998 99999998999999999865 8999999999988521          11234688887655433  2


Q ss_pred             ----cCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          285 ----SEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       285 ----~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                          ++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~  109 (126)
T cd04640          80 DLEELENASVGDVVETLKASGRQHALVVDR  109 (126)
T ss_pred             cHHHhccCcHHHHHHHHHHCCCceEEEEEC
Confidence                37899999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.35  E-value=8.4e-12  Score=104.71  Aligned_cols=91  Identities=19%  Similarity=0.278  Sum_probs=79.4

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc---cccccccccCCcEecCCCCHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VPLRKMIIRRIPRVSEDMPLYDI  293 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~---~~V~dIM~r~~~~V~e~~~l~ea  293 (464)
                      ++..+++++++. ++++.|.+.+++++||+++  ++++|+++.+|+........   .++.++|.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence            456789999998 9999999999999999986  89999999999987543321   15677888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 012416          294 LNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       294 L~~m~~~~~~~a~VVDe  310 (464)
                      ++.|++++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~V~~~   95 (111)
T cd04612          79 LKRMAERDIGRLPVVDD   95 (111)
T ss_pred             HHHHHhCCCCeeeEEcC
Confidence            99999999999999987

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=6.2e-12  Score=109.99  Aligned_cols=92  Identities=21%  Similarity=0.349  Sum_probs=79.4

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----c--------------------cc
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------------------VP  272 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~--------------------~~  272 (464)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|++......    .                    .+
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            456789999998 99999999999999999875 8999999999997643221    1                    16


Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.++|.++++++++++++.++++.|.+.+.+.+||+|+
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~  117 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD  117 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence            78888888999999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.35  E-value=9.3e-12  Score=104.64  Aligned_cols=91  Identities=19%  Similarity=0.324  Sum_probs=79.7

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--ccccccccccCCcEecCCCCHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL  294 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r~~~~V~e~~~l~eaL  294 (464)
                      ++++++.++++. ++.+.|.+.+++++||+++  ++++|+++.+|+++....+  ..++.++|..++.+++++.++.+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence            467789999998 9999999999999999986  7999999999998754332  2468888778889999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 012416          295 NEFQKGHSHIAVVYKD  310 (464)
Q Consensus       295 ~~m~~~~~~~a~VVDe  310 (464)
                      +.|.+.+.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~V~~~   94 (110)
T cd04588          79 RLMNKHNVGRLIVTDD   94 (110)
T ss_pred             HHHHhcCCCEEEEECC
Confidence            9999999999999987

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.35  E-value=1.2e-11  Score=103.33  Aligned_cols=89  Identities=17%  Similarity=0.322  Sum_probs=78.7

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~  296 (464)
                      ++++++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|++....  ..++.++|..++.++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKDP--DETVEEIMSKDLVVAVPEMDIMDAARV   77 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccCc--cccHHHhCCCCCeEECCCCCHHHHHHH
Confidence            567899999998 9999999889999999975  79999999999986432  346888887888899999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 012416          297 FQKGHSHIAVVYKD  310 (464)
Q Consensus       297 m~~~~~~~a~VVDe  310 (464)
                      |.+++.+.+||+|+
T Consensus        78 ~~~~~~~~~~Vv~~   91 (107)
T cd04610          78 MFRTGISKLPVVDE   91 (107)
T ss_pred             HHHhCCCeEeEECC
Confidence            99999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.35  E-value=9.1e-12  Score=104.87  Aligned_cols=91  Identities=18%  Similarity=0.340  Sum_probs=79.8

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--cccccccccccCCcEecCCCCHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL  294 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--~~~~V~dIM~r~~~~V~e~~~l~eaL  294 (464)
                      ++.+++.+.++. ++.+.|.+.+++++||+++  ++++|+++.+|+......  ...++.++|.+++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   79 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence            567889999998 9999999999999999986  799999999998764422  23578889888899999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 012416          295 NEFQKGHSHIAVVYKD  310 (464)
Q Consensus       295 ~~m~~~~~~~a~VVDe  310 (464)
                      +.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~V~~~   95 (110)
T cd04595          80 ELMVEHDIGRVPVVED   95 (110)
T ss_pred             HHHHHcCCCeeEEEeC
Confidence            9999999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.35  E-value=7.5e-12  Score=105.30  Aligned_cols=92  Identities=16%  Similarity=0.292  Sum_probs=80.7

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCCCCHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  292 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~~~l~e  292 (464)
                      ++.++++++++. ++++.|.+.+++++||++++ ++++|+++.+|+.....+.    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   79 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED   79 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence            467789999998 99999999999999999875 8899999999998653321    25788898888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 012416          293 ILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       293 aL~~m~~~~~~~a~VVDe  310 (464)
                      +++.|++.+.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~Vv~~   97 (114)
T cd04613          80 ALKKFEDSDYEQLPVVDD   97 (114)
T ss_pred             HHHHHhhCCccEeeEEeC
Confidence            999999999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=5.1e-12  Score=106.74  Aligned_cols=92  Identities=18%  Similarity=0.293  Sum_probs=79.5

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc------cccccccccccCCcEecCCCCH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------DAVPLRKMIIRRIPRVSEDMPL  290 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~------~~~~V~dIM~r~~~~V~e~~~l  290 (464)
                      ++.++++++++. ++.+.|.+++++++||++++ ++++|+++.+|+++....      ...++.++|.+++.++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l   79 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI   79 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence            456789999998 99999999999999999865 799999999999864321      2356888887888899999999


Q ss_pred             HHHHHHHHhCCCcEEEEEec
Q 012416          291 YDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       291 ~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~~~Vv~~   99 (114)
T cd04629          80 VDLAQLMLKAKPKRYPVVDD   99 (114)
T ss_pred             HHHHHHHHHhCCCccCEEEC
Confidence            99999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=9.8e-12  Score=105.00  Aligned_cols=91  Identities=13%  Similarity=0.230  Sum_probs=78.9

Q ss_pred             eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccccCCcEecCCCCHHHH
Q 012416          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDI  293 (464)
Q Consensus       218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~r~~~~V~e~~~l~ea  293 (464)
                      ...+++++++. ++++.|.+++++++||++++ ++++|+++.+|+++...+    ...++.++|..++.++++++++.++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA   80 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence            35679999998 99999999999999999875 899999999999864221    1357888888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 012416          294 LNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       294 L~~m~~~~~~~a~VVDe  310 (464)
                      ++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~~~~~Vvd~   97 (113)
T cd04615          81 RWLMSNNNISRLPVLDD   97 (113)
T ss_pred             HHHHHHcCCCeeeEECC
Confidence            99999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.34  E-value=1e-11  Score=104.67  Aligned_cols=91  Identities=18%  Similarity=0.263  Sum_probs=78.9

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccccCCcEecCCCCHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD  292 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~r~~~~V~e~~~l~e  292 (464)
                      +++.++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|++.....    ...++.++|.++++.+++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence            356789999998 9999999999999999986  689999999999865322    234688888788899999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 012416          293 ILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       293 aL~~m~~~~~~~a~VVDe  310 (464)
                      +++.|.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04589          79 ALLLMTRHRIHRVVVREG   96 (111)
T ss_pred             HHHHHHHhCccEEEEeeC
Confidence            999999999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.33  E-value=1.3e-11  Score=104.98  Aligned_cols=91  Identities=15%  Similarity=0.233  Sum_probs=79.3

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--------------ccccccccccCCc
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP  282 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--------------~~~V~dIM~r~~~  282 (464)
                      ++.+++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|++......              ..++.++|.+++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI   78 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence            456789999998 9999999999999999986  8999999999998654221              2457788888899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.+++..|++.+.+.+||+|+
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  106 (122)
T cd04585          79 TVSPDASVEEAAELMLERKISGLPVVDD  106 (122)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCceeEECC
Confidence            9999999999999999999999999987

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.33  E-value=1.5e-11  Score=103.44  Aligned_cols=91  Identities=13%  Similarity=0.193  Sum_probs=79.1

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-c---cccccccccccCCcEecCCCCHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---DAVPLRKMIIRRIPRVSEDMPLYD  292 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-~---~~~~V~dIM~r~~~~V~e~~~l~e  292 (464)
                      ++.+++.+.++. ++.+.+.+++++++||+++  ++++|+++.+|++.... .   ...++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence            567889999998 9999999999999999985  89999999999875321 1   135688888888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 012416          293 ILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       293 aL~~m~~~~~~~a~VVDe  310 (464)
                      +++.|.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04800          79 ALLLMLERGIHHLPVVDD   96 (111)
T ss_pred             HHHHHHHcCCCeeeEeEC
Confidence            999999999999999987

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.32  E-value=1.8e-11  Score=102.72  Aligned_cols=86  Identities=15%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             EEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHH
Q 012416          219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ  298 (464)
Q Consensus       219 vtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~  298 (464)
                      .++++++++. ++++.+.+.+++++||+++  ++++|+++.+|+.....   .++.++|..++.+++++.++.++++.|.
T Consensus         4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~   77 (104)
T cd04594           4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM   77 (104)
T ss_pred             eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence            3578999998 9999999999999999985  89999999999986432   2577788888899999999999999999


Q ss_pred             hCCCcEEEEEec
Q 012416          299 KGHSHIAVVYKD  310 (464)
Q Consensus       299 ~~~~~~a~VVDe  310 (464)
                      +++.+.+||+|+
T Consensus        78 ~~~~~~~~Vv~~   89 (104)
T cd04594          78 KNKTRWCPVVDD   89 (104)
T ss_pred             HcCcceEEEEEC
Confidence            999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.32  E-value=9.4e-12  Score=104.95  Aligned_cols=86  Identities=17%  Similarity=0.213  Sum_probs=74.2

Q ss_pred             EcCCCChHHHHHHHHHHcC-----CcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHH
Q 012416          221 LDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN  295 (464)
Q Consensus       221 V~~d~tl~eeal~~m~~~~-----~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~  295 (464)
                      +++++++. ++++.|.+++     +..+||++++ ++++|+++.+|++....  ..++.++|..++..+++++++.++++
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~~~   77 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLADP--DTPVSDIMDTDVISVSADDDQEEVAR   77 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCCC--cchHHHHhCCCCeEEcCCCCHHHHHH
Confidence            57889998 9999998877     4678999865 89999999999986532  34688887777889999999999999


Q ss_pred             HHHhCCCcEEEEEec
Q 012416          296 EFQKGHSHIAVVYKD  310 (464)
Q Consensus       296 ~m~~~~~~~a~VVDe  310 (464)
                      .|.+++.+.+||+|+
T Consensus        78 ~~~~~~~~~~~Vv~~   92 (109)
T cd04606          78 LFEKYDLLALPVVDE   92 (109)
T ss_pred             HHHHcCCceeeeECC
Confidence            999999999999997

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=1.2e-11  Score=107.27  Aligned_cols=91  Identities=16%  Similarity=0.309  Sum_probs=77.8

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----------------ccccccccccc
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------DAVPLRKMIIR  279 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----------------~~~~V~dIM~r  279 (464)
                      ++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+......                 ...++.++|.+
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence            466789999998 99999999999999999876 899999999998743210                 12467888888


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK  309 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVD  309 (464)
                      +++++++++++.++++.|.+.+.+.+||++
T Consensus        80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~  109 (128)
T cd04632          80 PVITASPNDSVRDAVDRMLENDDSSVVVVT  109 (128)
T ss_pred             CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence            899999999999999999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.32  E-value=7.9e-12  Score=109.75  Aligned_cols=92  Identities=14%  Similarity=0.286  Sum_probs=79.5

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc--------------------------ccc
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY--------------------------RDA  270 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~--------------------------~~~  270 (464)
                      ++.++++++++. ++++.|.++++.++||++++ ++++|+++.+|++....                          ...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            567889999998 99999999999999999865 89999999999875321                          112


Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++.++|.+++..+++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~  120 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG  120 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC
Confidence            4678888778899999999999999999999999999984

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.1e-11  Score=102.06  Aligned_cols=90  Identities=23%  Similarity=0.268  Sum_probs=78.9

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~  296 (464)
                      ++++++++.++. ++++.+.+.+++++||++++ ++++|+++.++++....  ..++.++|.+++.++++++++.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL   77 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence            567889999998 89999999999999999876 89999999999986432  235777777888999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 012416          297 FQKGHSHIAVVYKD  310 (464)
Q Consensus       297 m~~~~~~~a~VVDe  310 (464)
                      |.+++.+.+||+|+
T Consensus        78 ~~~~~~~~~~Vvd~   91 (106)
T cd04638          78 MVENNIRRVPVVDD   91 (106)
T ss_pred             HHHcCCCEEEEEEC
Confidence            99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.32  E-value=1.5e-11  Score=104.78  Aligned_cols=92  Identities=17%  Similarity=0.255  Sum_probs=77.5

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC--CCcEEEEEEcchhcccccccccccccccccCCcEecC--CCCHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE--DMPLYD  292 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e--~~~l~e  292 (464)
                      ++.++++++++. ++++.|.+.+++.+||+|+.  .++++|+++.+|++.... ...++.++|.+++..+..  ++++.+
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~   80 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE   80 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence            566789999998 99999999999999999861  379999999999875432 234688888777777755  999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 012416          293 ILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       293 aL~~m~~~~~~~a~VVDe  310 (464)
                      +++.|++++.+.+||+|+
T Consensus        81 ~l~~~~~~~~~~~pVv~~   98 (114)
T cd04602          81 ANEILRESKKGKLPIVND   98 (114)
T ss_pred             HHHHHHhcCCCceeEECC
Confidence            999999999999999987

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.32  E-value=1.2e-11  Score=104.24  Aligned_cols=92  Identities=15%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCCCCHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  292 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~~~l~e  292 (464)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.++++......    ..++.++|.+++.++++++++.+
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            455688999998 99999998899999999875 8999999999987654321    24688998888899999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 012416          293 ILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       293 aL~~m~~~~~~~a~VVDe  310 (464)
                      +++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~~~~~~Vv~~   98 (114)
T cd04604          81 ALELMEENKITALPVVDD   98 (114)
T ss_pred             HHHHHHHcCCCEEEEECC
Confidence            999999999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.31  E-value=1.5e-11  Score=103.71  Aligned_cols=91  Identities=14%  Similarity=0.208  Sum_probs=77.9

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-c---c-ccccccccccCCcEecCCCCHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---D-AVPLRKMIIRRIPRVSEDMPLY  291 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-~---~-~~~V~dIM~r~~~~V~e~~~l~  291 (464)
                      ++.++++++++. ++.+.|.+++.+.+||+++  ++++|+|+.+|++.... .   . ..++.++|.+++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~   78 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL   78 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence            567789999998 9999999999999999985  89999999999874221 1   1 1568888878888999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 012416          292 DILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       292 eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.|.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~l~Vv~~   97 (113)
T cd04587          79 EALHLMVQGKFRHLPVVDK   97 (113)
T ss_pred             HHHHHHHHcCCCcccEECC
Confidence            9999999999999999997

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.31  E-value=3.8e-12  Score=111.19  Aligned_cols=92  Identities=18%  Similarity=0.297  Sum_probs=75.4

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc----ccccccccccccCCcEecCCCCHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMIIRRIPRVSEDMPLYD  292 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~----~~~~~V~dIM~r~~~~V~e~~~l~e  292 (464)
                      ++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++....    ....++.++|.+++.++.+++++.+
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence            567899999998 99999999999999999875 78999999999985321    2246899999999999999999999


Q ss_pred             HHHHHHhC---------CCcEEEEEec
Q 012416          293 ILNEFQKG---------HSHIAVVYKD  310 (464)
Q Consensus       293 aL~~m~~~---------~~~~a~VVDe  310 (464)
                      +.+.|...         +.+.+||+|+
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~v~~~  107 (124)
T cd04608          81 LSRILETDAFLLVFFEQISSAAIGKEK  107 (124)
T ss_pred             HHhhcccCCceEEEecccccccccccc
Confidence            99976432         4455556654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.1e-11  Score=101.76  Aligned_cols=79  Identities=8%  Similarity=0.185  Sum_probs=71.2

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  296 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~  296 (464)
                      ++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|+....             .+.++++++++.++++.
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~   66 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK   66 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence            567889999998 99999999999999999865 8999999999998642             17789999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 012416          297 FQKGHSHIAVVYKD  310 (464)
Q Consensus       297 m~~~~~~~a~VVDe  310 (464)
                      |.+++.+.+||+|+
T Consensus        67 m~~~~~~~lpVv~~   80 (96)
T cd04614          67 MKRNRIEQIPIING   80 (96)
T ss_pred             HHHhCCCeeeEECC
Confidence            99999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=1.5e-11  Score=105.46  Aligned_cols=91  Identities=13%  Similarity=0.180  Sum_probs=79.0

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--------------cccccccccccCCc
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP  282 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--------------~~~~V~dIM~r~~~  282 (464)
                      ++.++++++++. ++.+.+.+++++++||+++  ++++|+++.+|+.+....              ...++.++|.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence            567889999998 9999999999999999985  799999999999764211              12357888888899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~~  106 (122)
T cd04637          79 TVSPDTPVDEASKLLLENSISCLPVVDE  106 (122)
T ss_pred             eeCCCCcHHHHHHHHHHcCCCeEeEECC
Confidence            9999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.31  E-value=1.6e-11  Score=104.06  Aligned_cols=87  Identities=21%  Similarity=0.182  Sum_probs=76.0

Q ss_pred             cceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC--CCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHH
Q 012416          216 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDI  293 (464)
Q Consensus       216 ~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~ea  293 (464)
                      .+...+++++++. ++.+.+.+++++++||+++.  .++++|+|+.+|+......       +|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~   73 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV   73 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence            4677889999998 99999999999999999862  3789999999999865432       677888899999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 012416          294 LNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       294 L~~m~~~~~~~a~VVDe  310 (464)
                      ++.|++++.+.+||+++
T Consensus        74 ~~~~~~~~~~~~pVv~~   90 (105)
T cd04591          74 HQLFRKLGLRHLLVVDE   90 (105)
T ss_pred             HHHHHHcCCCEEEEEEC
Confidence            99999999999999965

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=2e-11  Score=103.53  Aligned_cols=91  Identities=14%  Similarity=0.334  Sum_probs=75.7

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcC-CcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCC--CC
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSED--MP  289 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~-~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~--~~  289 (464)
                      ++.+++.+.++. ++++.|.+++ +..+||.+ + ++++|+++.+|++.....+    ..++.++|.+++++++++  ++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~   78 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD   78 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence            346789999998 9999998888 66778776 3 7899999999998643221    246888887888889887  78


Q ss_pred             HHHHHHHHHhCCCcEEEEEec
Q 012416          290 LYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       290 l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.++++.|.+++.+.+||+|+
T Consensus        79 l~~a~~~~~~~~~~~~pVvd~   99 (115)
T cd04620          79 IFTALSLFRQHQIRHLPVLDD   99 (115)
T ss_pred             HHHHHHHHHHhCCceEEEEcC
Confidence            999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=3.5e-11  Score=101.42  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=78.6

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-----ccccccccccccCCcEecCCCCHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRRIPRVSEDMPLY  291 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-----~~~~~V~dIM~r~~~~V~e~~~l~  291 (464)
                      +++++++++++. ++++.|.+++++.+||+++  ++++|+++.+|++....     ....++.++|.++++++++++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   78 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN   78 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence            456789999998 9999999999999999985  48999999999986431     123468888877888999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 012416          292 DILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       292 eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.|.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~~~Vv~~   97 (112)
T cd04802          79 EAAKLMAKHGIKRLPVVDD   97 (112)
T ss_pred             HHHHHHHHcCCCeeEEeeC
Confidence            9999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.28  E-value=1.9e-11  Score=129.81  Aligned_cols=105  Identities=20%  Similarity=0.362  Sum_probs=86.8

Q ss_pred             HHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccc
Q 012416          197 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVP  272 (464)
Q Consensus       197 I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~  272 (464)
                      ..+.  ++.++|+++|.+  ++.++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++....    ...+
T Consensus       328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~  401 (454)
T TIGR01137       328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDA  401 (454)
T ss_pred             HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCC
Confidence            4455  688999999985  688999999998 99999999999999999865 899999999999864322    1346


Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK  309 (464)
Q Consensus       273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVD  309 (464)
                      +.++|.++++++++++++.++++.|.+++  ..+|++
T Consensus       402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~  436 (454)
T TIGR01137       402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS--SAIVTE  436 (454)
T ss_pred             HHHhcCCCCeEECCcCcHHHHHHHHHHCC--eeEEEE
Confidence            88998888889999999999999998864  344444

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.28  E-value=4e-11  Score=129.11  Aligned_cols=136  Identities=9%  Similarity=0.108  Sum_probs=100.6

Q ss_pred             cCCHHHHHHHHhhccccc-ccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEee
Q 012416          166 LLRRAELKTFVNFHGNEA-GKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP  244 (464)
Q Consensus       166 ~~s~eEL~~lve~~~~e~-~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~P  244 (464)
                      ..++.++-..+...|--+ --.+.=.++.+..++.+.+..     ..|++  +++++++++|+. ++++.|.+++++.+|
T Consensus        64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lp  135 (505)
T PLN02274         64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVC  135 (505)
T ss_pred             ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEE
Confidence            456667666554211000 000111334456677777542     22663  778999999998 999999999999999


Q ss_pred             EEecC--CCcEEEEEEcchhcccccccccccccccccC--CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          245 VYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       245 Vvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~--~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      |++++  .++++|+|+.+|+.... ..+.++.++|.++  ++++++++++.++++.|.+++.+.+||+|+
T Consensus       136 VvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~  204 (505)
T PLN02274        136 VTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE  204 (505)
T ss_pred             EEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            99863  27899999999997543 3346899998766  679999999999999999999999999997

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=4.5e-11  Score=100.72  Aligned_cols=91  Identities=13%  Similarity=0.247  Sum_probs=78.0

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc-ccc----cccccccccccCCcEecCCCCHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV-DYR----DAVPLRKMIIRRIPRVSEDMPLY  291 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~-~~~----~~~~V~dIM~r~~~~V~e~~~l~  291 (464)
                      ++.++++++++. ++.+.|.+.+++.+||+++  ++++|+++.+|++.. ...    ...++.++|.+.+.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD   78 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence            467889999998 9999999999999999985  899999999998632 111    12248888888889999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 012416          292 DILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       292 eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.|.+.+.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~~~V~~~   97 (113)
T cd04622          79 EAARLMREHQVRRLPVVDD   97 (113)
T ss_pred             HHHHHHHHcCCCeeeEECC
Confidence            9999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.27  E-value=2e-11  Score=131.24  Aligned_cols=112  Identities=14%  Similarity=0.197  Sum_probs=88.7

Q ss_pred             hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC--CCcEEEEEEcchhcccccc
Q 012416          191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       191 ~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~~  268 (464)
                      +++++++..+.++.   .+.++.|    .++++++|+. ++++.|.+++++.+||+|++  .++++|+|+.+|+......
T Consensus        87 e~qa~lV~kVk~~~---~g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~  158 (502)
T PRK07107         87 ESEAAMVRRVKNYK---AGFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS  158 (502)
T ss_pred             HHHHHHHHHHHHHh---cCCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence            55565555555433   2222322    4789999999 99999999999999999852  3799999999999754323


Q ss_pred             ccccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 DAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 ~~~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+.++.++|.+  ++.++++++++.++++.|.+++.+.+||+|+
T Consensus       159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~  202 (502)
T PRK07107        159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK  202 (502)
T ss_pred             CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            34689999875  6778999999999999999999999999997

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=4e-11  Score=102.49  Aligned_cols=91  Identities=15%  Similarity=0.304  Sum_probs=78.9

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--------------cccccccccccCCc
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP  282 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--------------~~~~V~dIM~r~~~  282 (464)
                      +++++++++++. ++.+.|.+.+++++||+++  ++++|+++.+|++.....              ...++.++|.+++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI   78 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence            456789999998 9999999999999999985  899999999998764321              13467788878899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.++++.|.+.+.+.+||+|+
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  106 (121)
T cd04633          79 TIEPDTSVSDVASLMLENNIGGLPVVDD  106 (121)
T ss_pred             EECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence            9999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=5.3e-11  Score=100.34  Aligned_cols=91  Identities=11%  Similarity=0.189  Sum_probs=77.2

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----cccccccccccCCcEecCCCCHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  291 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~dIM~r~~~~V~e~~~l~  291 (464)
                      ++.++++++++. ++++.+.+++++.+||.+ + ++++|+++.+|+++....     ...++.++|..++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   78 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID   78 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence            567889999998 999999888888887765 4 799999999999865321     13468899877788999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 012416          292 DILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       292 eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.|.+++...+||+|+
T Consensus        79 ~a~~~m~~~~~~~l~Vv~~   97 (112)
T cd04625          79 EVRRLMVERHLRYLPVLDG   97 (112)
T ss_pred             HHHHHHHHcCCCeeeEEEC
Confidence            9999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.26  E-value=3.6e-11  Score=102.54  Aligned_cols=92  Identities=11%  Similarity=0.193  Sum_probs=79.3

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-------------ccccccccccccCCcE
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR  283 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-------------~~~~~V~dIM~r~~~~  283 (464)
                      ++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.....             ....++.++|..++.+
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT   79 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence            456789999998 99999999999999999876 89999999999875431             1124678888888899


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          284 VSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       284 V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++.++++.|.+++.+.+||+|+
T Consensus        80 i~~~~~l~~~~~~~~~~~~~~~~V~~~  106 (121)
T cd04584          80 VHPLDTVEEAALLMREHRIGCLPVVED  106 (121)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence            999999999999999999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.25  E-value=4.9e-11  Score=99.64  Aligned_cols=89  Identities=22%  Similarity=0.437  Sum_probs=74.7

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCCCCHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  292 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~~~l~e  292 (464)
                      ++.+++.++++. ++.+.|.+++++++||+++  ++++|+++.+|+.+.....    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   78 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE   78 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence            456789999998 9999999999999999985  7999999999998764322    24678888788889999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 012416          293 ILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       293 aL~~m~~~~~~~a~VVDe  310 (464)
                      +++.|++ .. .+||+|+
T Consensus        79 ~~~~~~~-~~-~~~vv~~   94 (110)
T cd04609          79 LSELLDR-GN-VAVVVDE   94 (110)
T ss_pred             HHHHHHh-CC-ceeEEec
Confidence            9999998 33 4788887

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.23  E-value=6.8e-11  Score=127.14  Aligned_cols=133  Identities=10%  Similarity=0.197  Sum_probs=100.6

Q ss_pred             ccCCHHHHHHHHhhcccccccCCCC----C-hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC
Q 012416          165 VLLRRAELKTFVNFHGNEAGKGGDL----T-HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~~~~G~L----~-~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~  239 (464)
                      ..+|+.++...+...|    --|.|    + ++..+.++.+.+     +++.|++  +++++++++|+. ++++.|.+++
T Consensus        59 ~~vt~~~ma~a~a~~G----glGvi~~~~~~e~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~  126 (495)
T PTZ00314         59 DTVTEHKMAIAMALMG----GIGVIHNNCSIEEQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKG  126 (495)
T ss_pred             cccccHHHHHHHHHCC----CeEEecCCCCHHHHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcC
Confidence            3456667665554321    11222    2 234555665554     4446664  667899999998 9999999999


Q ss_pred             CcEeeEEecC--CCcEEEEEEcchhccccccccccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          240 HSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       240 ~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++.+||++++  .++++|+|+.+|+.... ....++.++|.+  +++++++++++.++++.|.+++.+.+||+|+
T Consensus       127 ~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~  200 (495)
T PTZ00314        127 FSSILITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND  200 (495)
T ss_pred             CcEEEEEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC
Confidence            9999999863  36899999999997443 234679999876  7889999999999999999999999999998

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.23  E-value=7.4e-11  Score=126.13  Aligned_cols=101  Identities=16%  Similarity=0.236  Sum_probs=89.1

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP  282 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~  282 (464)
                      +...+++++|++  +++++++++++. ++++.|.+++++.+||+++  ++++|+|+.+|+.....  ..++.++|.+++.
T Consensus        85 v~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~li  157 (475)
T TIGR01303        85 VAFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLV  157 (475)
T ss_pred             Hhhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCce
Confidence            346678899985  668899999998 9999999999999999874  68999999999975432  3579999999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus       158 tv~~~~sL~eAl~lM~~~~i~~LPVVD~  185 (475)
T TIGR01303       158 TAPADTEPRKAFDLLEHAPRDVAPLVDA  185 (475)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999999999999999999999997

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.1e-10  Score=96.43  Aligned_cols=92  Identities=20%  Similarity=0.316  Sum_probs=79.0

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc----cccccccccCCcEecCCCCHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA----VPLRKMIIRRIPRVSEDMPLYD  292 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~----~~V~dIM~r~~~~V~e~~~l~e  292 (464)
                      ++..++.+.++. ++.+.+.+++++++||++++ ++++|+++.+|+........    ..+.++|..++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE   79 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence            456789999998 99999999999999999875 89999999999987553321    1156677888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 012416          293 ILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       293 aL~~m~~~~~~~a~VVDe  310 (464)
                      +++.|.+.+.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~V~~~   97 (113)
T cd02205          80 AAELMLEHGIRRLPVVDD   97 (113)
T ss_pred             HHHHHHHcCCCEEEEEcC
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.21  E-value=6.9e-11  Score=100.69  Aligned_cols=91  Identities=19%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcC-CcEeeEEecCCCcEEEEEEcchhcccccc-------cccccccccccCCcEecCCC
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR-------DAVPLRKMIIRRIPRVSEDM  288 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~-~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-------~~~~V~dIM~r~~~~V~e~~  288 (464)
                      ++.++++++++. ++.+.+...+ ++.+||+++  ++++|+++.+|++.....       ...++.++|..++.++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   78 (119)
T cd04598           2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT   78 (119)
T ss_pred             CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence            345689999998 9999998877 899999986  899999999998754321       23578899888888999999


Q ss_pred             CHHHHHHHHHhCCCc---EEEEEec
Q 012416          289 PLYDILNEFQKGHSH---IAVVYKD  310 (464)
Q Consensus       289 ~l~eaL~~m~~~~~~---~a~VVDe  310 (464)
                      ++.+++..|.+++..   ..+|+|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vv~~  103 (119)
T cd04598          79 PLEEVSRLATGRDSQNLYDGFIVTE  103 (119)
T ss_pred             CHHHHHHHHHcCCcccccccEEEee
Confidence            999999999988753   3467877

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.21  E-value=5e-11  Score=117.55  Aligned_cols=102  Identities=16%  Similarity=0.132  Sum_probs=89.7

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---cccccccccccCCc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIP  282 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---~~~~V~dIM~r~~~  282 (464)
                      .+|+++|.+. ++.++++++++. ++++.|.+.+++.+||++++ ++++|+|+.+|+.+....   ...++.++|.++++
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            6899999863 277899999998 99999999999999999876 899999999999865322   24578999988899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~  259 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDD  259 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence            9999999999999999999999999997

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.19  E-value=2.1e-10  Score=97.01  Aligned_cols=96  Identities=23%  Similarity=0.386  Sum_probs=84.1

Q ss_pred             cccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc--c-ccccccccCCcEecC
Q 012416          210 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--V-PLRKMIIRRIPRVSE  286 (464)
Q Consensus       210 dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~--~-~V~dIM~r~~~~V~e  286 (464)
                      ++|.  .+++++.++.++. ++...|.+++++.+||.++  ++++|+++.+|+.++.....  . ++.++|.+++.++.+
T Consensus         3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~   77 (117)
T COG0517           3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP   77 (117)
T ss_pred             cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence            4454  4788999999998 9999999999999999975  37999999999998765432  1 488898889999999


Q ss_pred             CCCHHHHHHHHHh-CCCcEEEEEec
Q 012416          287 DMPLYDILNEFQK-GHSHIAVVYKD  310 (464)
Q Consensus       287 ~~~l~eaL~~m~~-~~~~~a~VVDe  310 (464)
                      +.++.++++.|.+ ++.+.+||+|+
T Consensus        78 ~~~~~~~~~~m~~~~~~~~lpVv~~  102 (117)
T COG0517          78 DTPLEEALELMVERHKIRRLPVVDD  102 (117)
T ss_pred             CCCHHHHHHHHHHHcCcCeEEEEEC
Confidence            9999999999999 79999999998

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=1.4e-10  Score=103.52  Aligned_cols=91  Identities=16%  Similarity=0.308  Sum_probs=78.4

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----------------------------
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------------------------  268 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----------------------------  268 (464)
                      ++++++.++++. ++.+.|.+.+++.+||+++  ++++|+++.+|++.....                            
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            467899999998 9999999999999999985  799999999998754211                            


Q ss_pred             --------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 --------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 --------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                              ...++.++|.+++.++++++++.+++..|++.+.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~  128 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED  128 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence                    123567788888999999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.08  E-value=2.6e-10  Score=120.93  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=91.1

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc----ccccccccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMII  278 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~----~~~~~V~dIM~  278 (464)
                      +--.+++++|+.  +.+++++.+|+. ++.+.|.+.|.|.+.|++++ +...|||+.+|+....-    +.+.+|.++|+
T Consensus       146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT  221 (610)
T COG2905         146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT  221 (610)
T ss_pred             HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence            344568888885  567899999998 99999999999988888865 89999999999986532    22578999999


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       279 r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .|+.+|..++.+.+|+-.|.+++++.+||.++
T Consensus       222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~e~  253 (610)
T COG2905         222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED  253 (610)
T ss_pred             cCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence            99999999999999999999999999999976

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.97  E-value=2.3e-09  Score=95.54  Aligned_cols=93  Identities=15%  Similarity=0.139  Sum_probs=77.6

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc---cc------------ccccc----
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VP------------LRKMI----  277 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~---~~------------V~dIM----  277 (464)
                      ++.++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++......   ..            +.++|    
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            677899999999 99999999999999999875 89999999999987543221   01            23354    


Q ss_pred             -----ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 012416          278 -----IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL  311 (464)
Q Consensus       278 -----~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDey  311 (464)
                           .++++++++++++.++++.|.+++.+.+||+|+.
T Consensus        80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence                 3668899999999999999999999999999973

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.92  E-value=8.8e-09  Score=112.18  Aligned_cols=56  Identities=18%  Similarity=0.336  Sum_probs=50.3

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ..+|+|+|++  +++++++++++. ++++.|.+++++++||+|++ |+++|+|+.+|+.+
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~  122 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLAR  122 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHH
Confidence            3689999985  778999999998 99999999999999999875 89999999999864

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.65  E-value=7.8e-08  Score=72.30  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=35.8

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++|.++++++++++++.++++.|++++.+.+||+|+
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~   38 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE   38 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec
Confidence            46788889999999999999999999999999999998

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.58  E-value=6.2e-08  Score=72.85  Aligned_cols=55  Identities=29%  Similarity=0.496  Sum_probs=50.5

Q ss_pred             cccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       208 V~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      |+++|++  +++++++++++. ++.+.|.+++++++||+|++ ++++|+++.+|++++.
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence            5789997  789999999998 99999999999999999876 9999999999998754

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=9e-07  Score=93.17  Aligned_cols=101  Identities=14%  Similarity=0.132  Sum_probs=80.3

Q ss_pred             cccccccccCcc-eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEe
Q 012416          206 KTAKDAMTPISK-AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV  284 (464)
Q Consensus       206 itV~dIMtPR~d-vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V  284 (464)
                      .++.++|.+... .+...++.+.. ++++.|.+.+.+++.|+|++ ++++|+++.+++....... .++.+.+.....+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  350 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-QGLDAALIDAPLAV  350 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-CchhhhhccCCcee
Confidence            567888854221 22344666777 89999999999999999876 8999999999997654332 35777767778899


Q ss_pred             cCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          285 SEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       285 ~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++.+++..|.+.... +||+|+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~-~~v~~~  375 (400)
T PRK10070        351 DAQTPLSELLSHVGQAPCA-VPVVDE  375 (400)
T ss_pred             CCCCCHHHHHHHHHhCCCc-EEEECC
Confidence            9999999999999998877 899997

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.40  E-value=1.7e-06  Score=90.56  Aligned_cols=92  Identities=13%  Similarity=0.190  Sum_probs=75.4

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc-----cc-cccc------cccCCcEe
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-----VP-LRKM------IIRRIPRV  284 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~-----~~-V~dI------M~r~~~~V  284 (464)
                      ++..+..+.++. ++++.|...+++.+||++.. ++.+|.++..|+.....+..     .. +++.      -..+++++
T Consensus       238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc  315 (381)
T KOG1764|consen  238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC  315 (381)
T ss_pred             hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence            588899999998 99999999999999999876 77799999999976544321     11 2211      12236789


Q ss_pred             cCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          285 SEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       285 ~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++.++.+++.+|..+++|.+.|||+
T Consensus       316 ~~~ssL~~vi~~lv~~~vHRl~VVd~  341 (381)
T KOG1764|consen  316 RPTSTLAEVIDKLVAHRVHRLWVVDE  341 (381)
T ss_pred             eecchHHHHHHHHHhcCceEEEEEcC
Confidence            99999999999999999999999998

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.35  E-value=5.1e-06  Score=86.47  Aligned_cols=88  Identities=14%  Similarity=0.178  Sum_probs=73.8

Q ss_pred             EEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHH
Q 012416          219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ  298 (464)
Q Consensus       219 vtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~  298 (464)
                      ....++.+.. ++++.+...+.....|++++ +++.|+++.+++....... ..+.+.|....+++++++++.+++..|.
T Consensus       253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (363)
T TIGR01186       253 ITKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVL  329 (363)
T ss_pred             eeecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHH
Confidence            3456677887 89999999999999999876 8999999999987654432 3577777777889999999999999999


Q ss_pred             hCCCcEEEEEec
Q 012416          299 KGHSHIAVVYKD  310 (464)
Q Consensus       299 ~~~~~~a~VVDe  310 (464)
                      +++.. +||+|+
T Consensus       330 ~~~~~-~~v~~~  340 (363)
T TIGR01186       330 KAGIK-VPVVDE  340 (363)
T ss_pred             hCCCC-EEEECC
Confidence            99999 999997

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.31  E-value=6.8e-07  Score=96.08  Aligned_cols=105  Identities=21%  Similarity=0.249  Sum_probs=85.2

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCC----CcEEEEEEcchhcccccc----------
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP----TNIIGLILVKNLLSVDYR----------  268 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~----d~iVGIVt~kDLl~~~~~----------  268 (464)
                      +++.+|+|+|.+  ++++++.-..+. .+.+.++.+.|..|||+|+..    +++.|++-...++.....          
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            356789999996  899999999998 899999999999999998543    367888887776521100          


Q ss_pred             ----------------c----------------ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 ----------------D----------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 ----------------~----------------~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                      +                -.++..+|...|++|++++++..++..|+.-+.+.+.||+.
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~  729 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK  729 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC
Confidence                            0                13345666677899999999999999999999999999987

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.20  E-value=3.3e-06  Score=87.07  Aligned_cols=137  Identities=11%  Similarity=0.131  Sum_probs=105.1

Q ss_pred             ccCCHHHHHHHHhhcccccccCC-CCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEe
Q 012416          165 VLLRRAELKTFVNFHGNEAGKGG-DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV  243 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~~~~G-~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~  243 (464)
                      +.+++.|....+.+++--+-=.. -=.+++..+++.+-.|..   .-++    +.+.+.++.++. ++++.-.+++++.+
T Consensus        71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~---g~~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~  142 (503)
T KOG2550|consen   71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYEN---GFIN----NPIVISPTTTVG-EVKEAKEKHGFSGI  142 (503)
T ss_pred             cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhc---cccc----CCcccCCcccch-hhhhhccccccccc
Confidence            46678887766655421000000 115667888888887764   2233    346688999999 99999999999999


Q ss_pred             eEEecC--CCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          244 PVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       244 PVvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ||.++.  ..+++|+|+.+|+-.. .+....+.++|+..+++.|...++.++=+.+++.+-..+||||+
T Consensus       143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~  210 (503)
T KOG2550|consen  143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD  210 (503)
T ss_pred             ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc
Confidence            999632  3689999999998655 44567899999988899999999999999999999999999998

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.98  E-value=4.1e-06  Score=89.49  Aligned_cols=99  Identities=14%  Similarity=0.173  Sum_probs=82.4

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcE
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR  283 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~  283 (464)
                      ++.+++++|+|  ++.++++++++. ++++.|.++++..+||+|++ |+++|+|+.+|++....++  .-+++|.....+
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~  266 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK  266 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence            56789999986  678899999998 99999999999999999876 8999999999999876554  236776555554


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEE
Q 012416          284 VSEDMPLYDILNEFQKGHSHIAVVY  308 (464)
Q Consensus       284 V~e~~~l~eaL~~m~~~~~~~a~VV  308 (464)
                      ..++..+.+++..|.+++...++|.
T Consensus       267 ~~~~~~l~~~~~~~~~~R~~wL~v~  291 (449)
T TIGR00400       267 PLDDSYFDTSILVMAKNRIIWLLVL  291 (449)
T ss_pred             CCcchhhhchHHHHHHhccchHHHH
Confidence            4466788999999999999998885

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.87  E-value=3.4e-05  Score=75.61  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..++.++|.+++.++.+++++.++.+.|.+++++-+||+|+
T Consensus       171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~  211 (294)
T COG2524         171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD  211 (294)
T ss_pred             cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC
Confidence            35789999999999999999999999999999999999997

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.83  E-value=3.2e-05  Score=65.41  Aligned_cols=56  Identities=18%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus        55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            3568999974  567899999998 99999999999999999876 89999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.75  E-value=6.3e-05  Score=62.97  Aligned_cols=59  Identities=22%  Similarity=0.362  Sum_probs=51.0

Q ss_pred             cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +....++.++|.+  ++.++++++++. ++++.+.+++.+++||++++ ++++|+|+.+|+++
T Consensus        55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            4455679999986  567889999998 99999999999999999865 89999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.71  E-value=6.9e-05  Score=63.20  Aligned_cols=58  Identities=26%  Similarity=0.409  Sum_probs=50.5

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+..++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence            467889998644566899999998 99999999999999999864 79999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.71  E-value=9e-05  Score=63.64  Aligned_cols=55  Identities=18%  Similarity=0.311  Sum_probs=49.1

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+|+++|.+  ++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|+..
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            679999985  677889999998 99999999999999999865 79999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.66  E-value=8.3e-05  Score=63.06  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|..  ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus        57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            34678899964  677899999998 99999999999999999865 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.66  E-value=0.00011  Score=62.74  Aligned_cols=60  Identities=13%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCC--CcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--TNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~--d~iVGIVt~kDLl~  264 (464)
                      .+.++.++|+.-.++.++++++++. ++++.|.+++++++||++++.  ++++|+|+.+|+++
T Consensus        56 ~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            4667889997323578999999998 999999999999999998652  58999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.65  E-value=0.00015  Score=78.62  Aligned_cols=103  Identities=15%  Similarity=0.222  Sum_probs=74.3

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccc---cccccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIR  279 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~---~V~dIM~r  279 (464)
                      ..+.+|+++|++..+++++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|+++.......   ..+.++.-
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~  235 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPLELLDSSKRYVVG  235 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChhhhhhhccCeeee
Confidence            45678999999867889999999998 99999999999999999865 789999999999876422100   01111110


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                        ..+... ...+-.+.+.+.+.+.+.|-..
T Consensus       236 --~av~~~-~~~~ra~~Lv~aGvd~i~vd~a  263 (502)
T PRK07107        236 --AGINTR-DYAERVPALVEAGADVLCIDSS  263 (502)
T ss_pred             --eccChh-hHHHHHHHHHHhCCCeEeecCc
Confidence              123332 3456677788888888765433

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.64  E-value=0.00023  Score=77.21  Aligned_cols=102  Identities=22%  Similarity=0.285  Sum_probs=76.9

Q ss_pred             cccccccCc---ceEEEcCC-CChHHHHHHHHHHcCCcEeeEE-ecCCCcEEEEEEcchhcccccc--------------
Q 012416          208 AKDAMTPIS---KAFSLDLD-ATLTLDTLNAIMTMGHSRVPVY-SGNPTNIIGLILVKNLLSVDYR--------------  268 (464)
Q Consensus       208 V~dIMtPR~---dvvtV~~d-~tl~eeal~~m~~~~~Sr~PVv-d~d~d~iVGIVt~kDLl~~~~~--------------  268 (464)
                      ..++|.|+.   ....++.+ .+++ +....|.++.|+.+||+ +++.++++|+|..||+......              
T Consensus       545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~  623 (696)
T KOG0475|consen  545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY  623 (696)
T ss_pred             hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence            445554433   34555555 8998 99999999999999987 5556889999999998632110              


Q ss_pred             -------------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 -------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 -------------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                   ....++++|...|.+|..++|...++++|++-+.....|..+
T Consensus       624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~  678 (696)
T KOG0475|consen  624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN  678 (696)
T ss_pred             cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC
Confidence                         023467787777889999999999999999999888877543

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.62  E-value=7.1e-05  Score=81.75  Aligned_cols=103  Identities=13%  Similarity=0.080  Sum_probs=79.4

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---------------
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------  268 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---------------  268 (464)
                      ...+|+++|+. .+++++++++++. ++.+.|.+++++.+||+|++ |+++|+++.+|++.....               
T Consensus       244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~  320 (546)
T PRK14869        244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE  320 (546)
T ss_pred             cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence            36789999982 3788999999998 99999999999999999876 899999999999864321               


Q ss_pred             ----c-------ccccccccccCCcEe---cCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416          269 ----D-------AVPLRKMIIRRIPRV---SEDMPLYDILNEFQKGHSHIAVVYK  309 (464)
Q Consensus       269 ----~-------~~~V~dIM~r~~~~V---~e~~~l~eaL~~m~~~~~~~a~VVD  309 (464)
                          .       ..++.++|.+.|..+   +...+...+.+.|++.+....|++.
T Consensus       321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia  375 (546)
T PRK14869        321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA  375 (546)
T ss_pred             chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH
Confidence                0       113455665555544   4456667888889998888777764

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.59  E-value=0.00013  Score=62.62  Aligned_cols=40  Identities=23%  Similarity=0.266  Sum_probs=37.2

Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++.++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~   97 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD   97 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC
Confidence            4688998888999999999999999999999999999997

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.51  E-value=0.00019  Score=60.43  Aligned_cols=56  Identities=14%  Similarity=0.354  Sum_probs=49.1

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+  .+.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            3568899975  567899999998 99999999999999999865 89999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.49  E-value=0.00027  Score=76.20  Aligned_cols=95  Identities=11%  Similarity=0.176  Sum_probs=72.2

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccc----cccCC
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM----IIRRI  281 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dI----M~r~~  281 (464)
                      .+++++|++  +++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++.....  +..+.    +....
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa  221 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA  221 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence            569999985  788999999998 99999999999999999875 7999999999999764332  11111    11111


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYK  309 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVD  309 (464)
                        +.-.....+.+..|.+.+.+. +++|
T Consensus       222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D  246 (479)
T PRK07807        222 --VGINGDVAAKARALLEAGVDV-LVVD  246 (479)
T ss_pred             --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence              333345778888898898888 5566

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.48  E-value=0.00018  Score=60.68  Aligned_cols=58  Identities=21%  Similarity=0.391  Sum_probs=51.1

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ..+.++.++|.+  ++.++++++++. ++++.|.+.+.+++||++++ |+++|+|+.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            356779999975  678899999998 99999999999999999865 79999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.46  E-value=0.00022  Score=60.77  Aligned_cols=58  Identities=21%  Similarity=0.452  Sum_probs=51.1

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ....+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ |+++|+++.+|++.
T Consensus        66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~  123 (124)
T cd04600          66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA  123 (124)
T ss_pred             cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence            356679999975  678899999998 99999999999999999864 89999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.45  E-value=0.00027  Score=59.07  Aligned_cols=46  Identities=15%  Similarity=0.226  Sum_probs=41.9

Q ss_pred             eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.+++++. ++++.|.+++..++||++++.|+++|+++.+|++.
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            67899999998 99999999999999999864478999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.44  E-value=0.00082  Score=70.50  Aligned_cols=97  Identities=18%  Similarity=0.276  Sum_probs=76.5

Q ss_pred             ccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----------ccccccc---ccc
Q 012416          213 TPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----------AVPLRKM---IIR  279 (464)
Q Consensus       213 tPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----------~~~V~dI---M~r  279 (464)
                      +++...+.+.+..++- ++...+.++++.|+||.|.+.++++.+++.+-+++.....          ..++.++   +..
T Consensus       159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~  237 (381)
T KOG1764|consen  159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS  237 (381)
T ss_pred             ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence            4444547888898887 8888999999999999985568999999999998754321          1122222   123


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+..+.+++++.++++.|..++..-+||||+
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~  268 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDE  268 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence            4677999999999999999999999999998

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.43  E-value=0.00016  Score=62.50  Aligned_cols=60  Identities=25%  Similarity=0.364  Sum_probs=47.7

Q ss_pred             cccccccccccCcceEEEc----CCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLD----LDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~----~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|++...++.++    +++++. ++++.|.+++.+++||++++.++++|+|+.+|+++
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            4567899997533333443    688998 99999999999999999864358999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.42  E-value=0.00027  Score=59.10  Aligned_cols=55  Identities=16%  Similarity=0.377  Sum_probs=48.5

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+  ++.++++++++. ++++.|.+++..++||+++  ++++|+++.+|+++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            4579999964  567899999998 9999999999999999973  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.42  E-value=0.00029  Score=59.34  Aligned_cols=56  Identities=16%  Similarity=0.285  Sum_probs=48.0

Q ss_pred             ccccccccccCcceEEEcCC--CChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLD--ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d--~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+  ++.+++++  +++. ++++.|.+++...+||++++ |+++|+|+.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            4678899975  56777776  6888 89999999999999999875 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.41  E-value=0.00028  Score=59.57  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=49.5

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|..  ++.++++++++. ++++.|.+++...+||+++  ++++|+|+.+|++.
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            45678899964  678999999998 9999999999999999975  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.40  E-value=0.0003  Score=58.22  Aligned_cols=56  Identities=20%  Similarity=0.418  Sum_probs=48.9

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.+++++|.+  ...++++++++. ++++.|.+++..++||++++ |+++|+++.+|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            3568899975  467789999998 99999999999999999875 79999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.39  E-value=0.00015  Score=72.44  Aligned_cols=41  Identities=15%  Similarity=0.173  Sum_probs=38.6

Q ss_pred             ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..+..+||.|++.+|++++++.++.++|++++++-+||+||
T Consensus       244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~  284 (382)
T COG3448         244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE  284 (382)
T ss_pred             cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc
Confidence            35678899999999999999999999999999999999998

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.39  E-value=0.00043  Score=57.28  Aligned_cols=54  Identities=15%  Similarity=0.278  Sum_probs=47.4

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +++++|.+  ...++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            47889976  456789999998 99999999999999999875 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.38  E-value=0.00032  Score=58.64  Aligned_cols=57  Identities=18%  Similarity=0.391  Sum_probs=50.1

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            35679999975  577899999998 99999999999999999865 79999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.35  E-value=0.00028  Score=71.91  Aligned_cols=58  Identities=24%  Similarity=0.401  Sum_probs=51.8

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~  265 (464)
                      +.+.+|+++|++  ++.++++++++. ++++.|.+++..++||+++  ++++|+|+.+|++++
T Consensus       266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            456789999986  678999999998 9999999999999999974  789999999999864

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.00039  Score=59.63  Aligned_cols=52  Identities=29%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             cccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhc
Q 012416          208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL  263 (464)
Q Consensus       208 V~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl  263 (464)
                      +.++|.+  ++.+++++.++. ++++.|.+++.+++||++++ ++++|+|+.+|+.
T Consensus        70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            3456764  678899999998 99999999999999999875 7899999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.35  E-value=0.00065  Score=73.46  Aligned_cols=100  Identities=16%  Similarity=0.223  Sum_probs=72.6

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccc---ccccccccCC
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRRI  281 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~---~V~dIM~r~~  281 (464)
                      +.+++++|++ .+++++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|++........   .-..++....
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa  222 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA  222 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence            4579999984 3678999999998 99999999999999999876 899999999999875422110   1112222222


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..+.++  -.+.++.|.+.+.+.+ |+|.
T Consensus       223 i~~~~~--~~e~a~~L~~agvdvi-vvD~  248 (486)
T PRK05567        223 VGVGAD--NEERAEALVEAGVDVL-VVDT  248 (486)
T ss_pred             cccCcc--hHHHHHHHHHhCCCEE-EEEC
Confidence            333332  2788889999999955 6664

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.34  E-value=0.00041  Score=57.77  Aligned_cols=55  Identities=15%  Similarity=0.421  Sum_probs=49.0

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.+++++|.+  ++.+++++.++. ++++.+.+.+.+++||+++  ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            5678999975  678899999998 9999999999999999985  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.33  E-value=0.00071  Score=72.92  Aligned_cols=98  Identities=10%  Similarity=0.106  Sum_probs=71.3

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccccccccccc--CCc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RIP  282 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r--~~~  282 (464)
                      ..+++++|++  +++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++.....  +..+..-+  ---
T Consensus       145 ~~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vga  218 (475)
T TIGR01303       145 FTQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGA  218 (475)
T ss_pred             CCCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehh
Confidence            3579999985  788999999998 99999999999999999865 8899999999999754332  22111000  001


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYK  309 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVD  309 (464)
                      .+.......+.+..|.+.+.+.+ |+|
T Consensus       219 av~~~~~~~~ra~~Lv~aGVd~i-~~D  244 (475)
T TIGR01303       219 AVGINGDVGGKAKALLDAGVDVL-VID  244 (475)
T ss_pred             eeeeCccHHHHHHHHHHhCCCEE-EEe
Confidence            13444566777888888887775 445

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.33  E-value=0.00035  Score=58.41  Aligned_cols=55  Identities=20%  Similarity=0.361  Sum_probs=48.7

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .++.++|.+  ...++++++++. ++++.+.+++..++||++++ ++++|+|+.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            578899965  567889999998 99999999999999999875 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.31  E-value=0.00044  Score=57.93  Aligned_cols=57  Identities=14%  Similarity=0.341  Sum_probs=49.6

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.++.++|.+  ++.+++.++++. ++++.|.+++..++||++++ |+++|+++.+|++.
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            45678889974  678899999998 99999999999999999865 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.30  E-value=0.00047  Score=57.64  Aligned_cols=55  Identities=18%  Similarity=0.339  Sum_probs=48.4

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .++.++|.+  ++.++++++++. ++++.|.+.+.+++||++++ ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            458999975  567889999998 99999999999999999865 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.29  E-value=0.00043  Score=59.09  Aligned_cols=57  Identities=16%  Similarity=0.405  Sum_probs=50.1

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.++.++|.+  .+.++++++++. ++++.|.+.+.+.+||++++ ++++|+|+.+|+++
T Consensus        68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            45678899975  678899999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.27  E-value=0.001  Score=72.18  Aligned_cols=105  Identities=11%  Similarity=0.143  Sum_probs=73.3

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccc---ccccccccC
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRR  280 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~---~V~dIM~r~  280 (464)
                      .+.+++++|+|+.++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|+++.......   .-..++.  
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~a~~D~~GrL~V--  232 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPNASLDSNGQLLV--  232 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCchhhhccCCCEEE--
Confidence            3578999999877899999999998 99999999999999999876 899999999999976422100   0011111  


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 012416          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN  312 (464)
Q Consensus       281 ~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG  312 (464)
                      -..+.......+-++.+.+.+.+.+.|--.+|
T Consensus       233 gaavg~~~~~~~~~~~l~~ag~d~i~id~a~G  264 (495)
T PTZ00314        233 GAAISTRPEDIERAAALIEAGVDVLVVDSSQG  264 (495)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            11233333335666677777777765533334

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.27  E-value=0.00052  Score=60.63  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=49.5

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|++  ++..+++++++. ++++.|.++++.++||+++  ++++|+|+.+|+++
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            35689999975  567899999998 9999999999999999975  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.26  E-value=0.001  Score=55.83  Aligned_cols=53  Identities=25%  Similarity=0.510  Sum_probs=47.6

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHH-cCCcEeeEEecCCC-cEEEEEEcchhc
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMT-MGHSRVPVYSGNPT-NIIGLILVKNLL  263 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~-~~~Sr~PVvd~d~d-~iVGIVt~kDLl  263 (464)
                      +++++|++  +++++.++.++. ++.+.|.+ ++++++||++++ + +++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence            69999985  678999999998 99999999 799999999875 5 999999999974

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.25  E-value=0.00053  Score=57.36  Aligned_cols=57  Identities=18%  Similarity=0.341  Sum_probs=50.0

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~  265 (464)
                      +.+++++|.+  ++.++++++++. ++++.|.+++...+||++++ ++++|+|+..|+++.
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            4578999975  578899999998 99999999999999999865 899999999999854

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.25  E-value=0.0009  Score=46.32  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=28.2

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++++++.++++.|.+++.+.+||+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   31 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDE   31 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECC
Confidence            3567899999999999999999999999987

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.24  E-value=0.00052  Score=57.25  Aligned_cols=57  Identities=25%  Similarity=0.389  Sum_probs=49.6

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ..++.++|.+  ++.++++++++. ++++.|.+.+.+.+||++++.++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            4789999986  567899999998 99999999999999999861378999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.24  E-value=0.00064  Score=56.42  Aligned_cols=56  Identities=23%  Similarity=0.437  Sum_probs=46.8

Q ss_pred             ccccccccccCcceEEEcC-CCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~-d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+  +...+.. ++++. ++++.|.+++++++||++++ ++++|+|+.+|++.
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            4578899965  3344556 99998 99999999999999999865 79999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.24  E-value=0.00048  Score=58.21  Aligned_cols=58  Identities=16%  Similarity=0.277  Sum_probs=47.4

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +..++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus        56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            345889997644444444599998 99999999999999999865 78999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.23  E-value=0.00069  Score=57.14  Aligned_cols=56  Identities=23%  Similarity=0.490  Sum_probs=48.1

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC-CCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d-~d~iVGIVt~kDLl~  264 (464)
                      .+++++|.+  ++.++++++++. ++++.|.+++..++||++++ .++++|+|+.+|++.
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            347788874  677899999998 99999999999999999764 268999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.23  E-value=0.00055  Score=58.14  Aligned_cols=57  Identities=16%  Similarity=0.402  Sum_probs=49.9

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ...++.++|.+  ++.+++.++++. ++++.|.+++.+.+||++++ |+++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            45678899964  578899999998 99999999999999999865 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.22  E-value=0.0012  Score=71.72  Aligned_cols=105  Identities=11%  Similarity=0.167  Sum_probs=74.6

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc--ccc----cccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPL----RKMI  277 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~--~~V----~dIM  277 (464)
                      .+.+|+++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++......  .+.    ..++
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~  238 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL  238 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence            4678999999866688999999998 99999999999999999865 79999999999987643210  111    1111


Q ss_pred             ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 012416          278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN  312 (464)
Q Consensus       278 ~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG  312 (464)
                      .  -..|.....-.+-.+.+.+.+.+++.|--.+|
T Consensus       239 v--gaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g  271 (505)
T PLN02274        239 V--GAAIGTRESDKERLEHLVKAGVDVVVLDSSQG  271 (505)
T ss_pred             E--EEEEcCCccHHHHHHHHHHcCCCEEEEeCCCC
Confidence            1  11244444445667777778888765533434

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.22  E-value=0.00074  Score=68.57  Aligned_cols=58  Identities=19%  Similarity=0.284  Sum_probs=51.4

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~  265 (464)
                      .+.+|+++|++  ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus       261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~  318 (321)
T PRK11543        261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA  318 (321)
T ss_pred             cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence            34679999986  677899999998 99999999999999999875 799999999999864

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.22  E-value=0.00055  Score=59.78  Aligned_cols=57  Identities=21%  Similarity=0.345  Sum_probs=50.5

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ....+++++|.+  ++.++++++++. ++++.|.+.+.+++||++ + |+++|+++.+|+++
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~  134 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR  134 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence            356789999975  678899999998 999999999999999998 4 89999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.21  E-value=0.00051  Score=58.29  Aligned_cols=57  Identities=16%  Similarity=0.391  Sum_probs=50.2

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.+.++.++|.+  ++.++++++++. ++++.+.+.+.+.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            356678899975  678899999998 9999999999999999985  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.21  E-value=0.00067  Score=57.60  Aligned_cols=57  Identities=14%  Similarity=0.330  Sum_probs=50.0

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ...++.++|..  ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            56678899964  677899999998 99999999999999999875 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.20  E-value=0.00068  Score=58.92  Aligned_cols=56  Identities=23%  Similarity=0.418  Sum_probs=49.1

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ...++.++|.+  ++..+++++++. ++++.|.+.+.+++||+++  ++++|+++.+|+++
T Consensus        76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            34479999975  678899999998 9999999999999999985  89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.18  E-value=0.0008  Score=55.93  Aligned_cols=57  Identities=18%  Similarity=0.333  Sum_probs=49.5

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.++.++|.+  ++.++++++++. ++++.|.+.+...+||++++ |+++|+++.+|+++
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            35678899975  678899999998 99999999999999999875 78999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.18  E-value=0.00089  Score=55.70  Aligned_cols=54  Identities=15%  Similarity=0.246  Sum_probs=47.1

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .++.++|.+  +..+++++.++. ++++.|.+++.+++||++ + |+++|+++.+|++.
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence            357888875  467899999998 999999999999999997 3 89999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.17  E-value=0.0008  Score=56.24  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=49.2

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|.+  ++..+++++++. ++++.|.+++..++||+++  ++++|+++.+|++.
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            35678899975  678899999998 9999999999999999974  78999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.17  E-value=0.00082  Score=56.10  Aligned_cols=56  Identities=21%  Similarity=0.413  Sum_probs=49.3

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++.+.+||++ + ++++|+|+.+|+++
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            45678899975  677899999998 999999999999999998 4 79999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.16  E-value=0.00081  Score=55.70  Aligned_cols=55  Identities=31%  Similarity=0.536  Sum_probs=48.3

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .++.++|.+  .+.++++++++. ++.+.+.+++.+++||++++ |+++|+++.+|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            468888975  567899999998 99999999999999999865 79999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.16  E-value=0.00092  Score=55.54  Aligned_cols=55  Identities=25%  Similarity=0.404  Sum_probs=48.2

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .++.++|.+  ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            467788875  678899999998 99999999999999999865 79999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.16  E-value=0.00073  Score=57.19  Aligned_cols=57  Identities=19%  Similarity=0.274  Sum_probs=50.4

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ....++.++|.+  .+.+++.++++. ++++.+.+++++.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            456779999975  678899999998 9999999999999999975  79999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.15  E-value=0.0009  Score=57.08  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=44.9

Q ss_pred             ccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       209 ~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +++|..  ++.++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|++.
T Consensus        68 ~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~  119 (120)
T cd04641          68 RSQDFE--GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ  119 (120)
T ss_pred             cccCCC--CCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence            445542  567899999998 99999999999999999875 88999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.15  E-value=0.00059  Score=57.30  Aligned_cols=55  Identities=20%  Similarity=0.309  Sum_probs=46.7

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|.+  .+.++++++++. ++++.|.+++  .+||++++ ++++|+++.+|+++
T Consensus        61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~  115 (116)
T cd04643          61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK  115 (116)
T ss_pred             hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence            46679999986  577889999998 9999998755  59999865 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.14  E-value=0.00088  Score=55.20  Aligned_cols=55  Identities=20%  Similarity=0.345  Sum_probs=48.5

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+  +..++++++++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~  104 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence            4568899975  677899999998 9999999999999999985  89999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.14  E-value=0.00071  Score=56.63  Aligned_cols=55  Identities=22%  Similarity=0.405  Sum_probs=48.7

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+  ++.++++++++. ++++.|.+++.+++||+++  |+++|+++.+|+++
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            4578899975  567899999998 9999999999999999985  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.14  E-value=0.00076  Score=56.29  Aligned_cols=55  Identities=24%  Similarity=0.370  Sum_probs=48.5

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .++.++|..  ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            468899964  678899999998 99999999999999999865 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.11  E-value=0.00099  Score=55.67  Aligned_cols=55  Identities=22%  Similarity=0.455  Sum_probs=48.4

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+  ++.++.+++++. ++++.|.+++..++||+++  ++++|+|+..|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            4578888964  677899999998 9999999999999999985  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.08  E-value=0.0012  Score=55.20  Aligned_cols=56  Identities=18%  Similarity=0.437  Sum_probs=48.6

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.++.++|.+  ++.++++++++. ++++.+.+++...+||+++  ++++|+|+.+|+++
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            45578899975  577889999998 9999999999999999985  38999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.05  E-value=0.0011  Score=45.89  Aligned_cols=46  Identities=20%  Similarity=0.481  Sum_probs=40.4

Q ss_pred             eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (464)
Q Consensus       218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~  265 (464)
                      +.++++++++. ++.+.|.+++++.+||++++ ++++|+++.+++...
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence            45678999998 99999999999999999875 789999999998653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.02  E-value=0.0013  Score=54.91  Aligned_cols=55  Identities=24%  Similarity=0.446  Sum_probs=48.6

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|..  ++.++++++++. ++++.|.+++.+++||+++  ++++|+++.+|+++
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            3578889964  678899999998 9999999999999999985  79999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.01  E-value=0.0013  Score=54.45  Aligned_cols=45  Identities=20%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus        51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~   95 (96)
T cd04614          51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK   95 (96)
T ss_pred             cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            67889999998 99999999999999999865 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=96.98  E-value=0.0022  Score=53.42  Aligned_cols=54  Identities=19%  Similarity=0.323  Sum_probs=47.1

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.++|.+  ++.++++++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence            47788864  567889999998 99999999999999999865 89999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.97  E-value=0.0011  Score=56.27  Aligned_cols=55  Identities=25%  Similarity=0.419  Sum_probs=48.4

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            458888864  678899999998 99999999999999999865 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.95  E-value=0.0014  Score=56.42  Aligned_cols=58  Identities=19%  Similarity=0.369  Sum_probs=49.4

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEec-CCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~-d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|++  ++++++++.++. ++++.|.+.+...+||+++ +.++++|+|+.+|++.
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            45678999975  678899999998 9999999999999999853 3478999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.94  E-value=0.0017  Score=54.00  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=48.1

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .++.++|.+  ++.+++++.++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            568888864  677899999998 99999999999999999865 79999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.91  E-value=0.0031  Score=56.06  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=28.6

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+.++++++++.++++.|.+++.+.+||+|+
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~   32 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS   32 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC
Confidence            4678999999999999999999999999997

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=96.91  E-value=0.0016  Score=54.26  Aligned_cols=54  Identities=15%  Similarity=0.203  Sum_probs=46.0

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ..+.++|.   ++.++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus        57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  110 (111)
T cd04590          57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE  110 (111)
T ss_pred             CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence            34666664   357889999998 99999999999999999875 78999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.89  E-value=0.0045  Score=53.73  Aligned_cols=32  Identities=6%  Similarity=-0.002  Sum_probs=29.8

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       279 r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++.+++++.++.++++.|++++...+||+|+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~   33 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE   33 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            56788999999999999999999999999987

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.89  E-value=0.0033  Score=66.09  Aligned_cols=92  Identities=12%  Similarity=0.116  Sum_probs=61.9

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-cccccccccccCC
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRI  281 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-~~~~V~dIM~r~~  281 (464)
                      ..-.+++++|.|....  ...+.+ .  +++   +++.+++.|++.      |+++..+....... ....+.+ +....
T Consensus       271 ~~~l~a~~~m~~~~~~--~~~~~~-~--~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~  335 (382)
T TIGR03415       271 LNVLTARSLMRPLTDL--EHVDGG-W--CVS---DRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES-LEAAP  335 (382)
T ss_pred             ccceeHHHHhcccccc--cccCcc-h--hhh---hcccceeEeecc------ceecccchHhHhhcccccchhh-hcccC
Confidence            4557889999763332  223333 2  232   378888888863      88887776543221 2235666 47778


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++|++++++.+++..+.+.+.+ ++|+|+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~  363 (382)
T TIGR03415       336 TVINPDTLMRDVLAARHRTGGA-ILLVEN  363 (382)
T ss_pred             cccCCCCcHHHHHHHHhcCCCC-eEEeeC
Confidence            8999999999999999988866 456676

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.88  E-value=0.0021  Score=53.65  Aligned_cols=56  Identities=14%  Similarity=0.297  Sum_probs=48.5

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.+++++|.+  ++.++++++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            3468888874  577899999998 99999999999999999875 88999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=96.88  E-value=0.0012  Score=60.68  Aligned_cols=39  Identities=15%  Similarity=0.207  Sum_probs=36.4

Q ss_pred             ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ....+|.+|++++.+++++.+++..|+++++..+||+++
T Consensus        66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~  104 (187)
T COG3620          66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE  104 (187)
T ss_pred             eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC
Confidence            456789999999999999999999999999999999987

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.87  E-value=0.0021  Score=55.38  Aligned_cols=51  Identities=18%  Similarity=0.266  Sum_probs=44.4

Q ss_pred             cccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          210 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       210 dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.|.  .++.++++++++. ++++.|.+++.+++||++++ ++++|+|+..|+++
T Consensus        75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            4554  3678899999998 99999999999999999875 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.78  E-value=0.0029  Score=53.18  Aligned_cols=49  Identities=20%  Similarity=0.396  Sum_probs=43.5

Q ss_pred             ccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          211 AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       211 IMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +|.+  ++.++++++++. ++++.|.+++...+||+++  ++++|+|+.+|+++
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence            7864  677899999998 9999999999999999953  79999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=96.73  E-value=0.0035  Score=66.75  Aligned_cols=41  Identities=7%  Similarity=0.025  Sum_probs=37.6

Q ss_pred             ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..+++++|.+++.++++++++.++++.|.+++...+||+|+
T Consensus       334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~  374 (454)
T TIGR01137       334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE  374 (454)
T ss_pred             cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            35788998889999999999999999999999999999997

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=96.67  E-value=0.0028  Score=69.80  Aligned_cols=59  Identities=27%  Similarity=0.363  Sum_probs=51.4

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCC-CcEEEEEEcchhcccc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP-TNIIGLILVKNLLSVD  266 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~-d~iVGIVt~kDLl~~~  266 (464)
                      +.+++|+|++  ++.++++++++. ++++.|.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            4679999975  667899999998 999999999999999998653 4799999999998754

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.65  E-value=0.003  Score=53.35  Aligned_cols=57  Identities=18%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCc---EeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHS---RVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~S---r~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++..   ..||++++ ++++|+|+.+|++.
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence            45679999975  678899999998 999999988753   44677765 89999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.59  E-value=0.0039  Score=55.36  Aligned_cols=56  Identities=20%  Similarity=0.423  Sum_probs=49.4

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ...++.++|.+  ++.+++.++++. ++++.|.+.+++++||+++  ++++|+++.+|++.
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            45678999975  678899999998 9999999999999999985  79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=96.49  E-value=0.0056  Score=60.32  Aligned_cols=40  Identities=18%  Similarity=0.332  Sum_probs=36.4

Q ss_pred             cccccccccC-CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRR-IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~-~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++++|.++ ++.+++++++.++++.|.+.+.+.++|+|+
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~  195 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE  195 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC
Confidence            4678898888 889999999999999999999999999997

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=96.45  E-value=0.0059  Score=61.86  Aligned_cols=86  Identities=13%  Similarity=0.164  Sum_probs=66.2

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---cc------cccccc
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AV------PLRKMI  277 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~~------~V~dIM  277 (464)
                      +++++|.|   ++++++++++. ++++.|++++....||+|+. |.++|+|+.+|++.....+   ..      .+..+ 
T Consensus       134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~-  207 (292)
T PRK15094        134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL-  207 (292)
T ss_pred             CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence            47788874   44799999998 99999999999999999875 7899999999998764321   11      12221 


Q ss_pred             ccCCcEecCCCCHHHHHHHHH
Q 012416          278 IRRIPRVSEDMPLYDILNEFQ  298 (464)
Q Consensus       278 ~r~~~~V~e~~~l~eaL~~m~  298 (464)
                      ....+.|+..+++.++.+.+.
T Consensus       208 ~~~~~~v~G~~~l~dl~~~l~  228 (292)
T PRK15094        208 SRHTWTVRALASIEDFNEAFG  228 (292)
T ss_pred             CCCeEEEEeccCHHHHHHHhC
Confidence            223467999999999998873

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.40  E-value=0.0099  Score=48.39  Aligned_cols=53  Identities=21%  Similarity=0.464  Sum_probs=46.5

Q ss_pred             cccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       208 V~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++|.+  +..+++.++++. ++.+.+.+.+.+.+||++++ ++++|+++.+|+++
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence            5677864  677889999998 99999999999999999876 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.40  E-value=0.0067  Score=50.23  Aligned_cols=54  Identities=17%  Similarity=0.320  Sum_probs=46.2

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ..+.++|.+  ++.+++.++++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            356777864  567789999998 9999999999999999984  68999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.38  E-value=0.0051  Score=65.95  Aligned_cols=60  Identities=20%  Similarity=0.381  Sum_probs=53.5

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      .+.+++++|++ .+++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|++...
T Consensus       141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence            35689999984 4788999999998 99999999999999999876 8999999999999764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.35  E-value=0.0053  Score=66.35  Aligned_cols=70  Identities=13%  Similarity=0.244  Sum_probs=59.9

Q ss_pred             hHHHHHHHhhcc---cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          192 DETTIIAGALEL---TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       192 ~E~~~I~~vl~l---~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      .++++..+++.=   ...+|+++||.  ++++++.++-+- ||+-.|.+++..++||+++  |+++|+|+..|++...
T Consensus       197 T~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~  269 (610)
T COG2905         197 TRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLF  269 (610)
T ss_pred             ehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhh
Confidence            356677777762   35789999995  899999999998 9999999999999999975  8999999999998754

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.33  E-value=0.0058  Score=50.47  Aligned_cols=54  Identities=19%  Similarity=0.280  Sum_probs=43.6

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      +.++.++|.+  ++.++++++++. ++.+.|.+ . ...||++++ ++++|+++.+|++.
T Consensus        56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~  109 (110)
T cd04609          56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK  109 (110)
T ss_pred             CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence            3568888964  567899999998 89888887 3 347888765 89999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.27  E-value=0.0097  Score=60.73  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             HHHHHHhhcccccccccccccCcceEEEcCC-CChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccc
Q 012416          194 TTIIAGALELTEKTAKDAMTPISKAFSLDLD-ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVP  272 (464)
Q Consensus       194 ~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d-~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~  272 (464)
                      ++.++++-...=.++++||.+ .+.-....+ ..-. .++..+.+.+.+.+.+++. .++.+|+|+..++...       
T Consensus       262 ~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~-------  331 (386)
T COG4175         262 RDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA-------  331 (386)
T ss_pred             HHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc-------
Confidence            456666666677899999985 232222222 2223 5777888887777777764 3679999999887654       


Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                         .+..++..++.++++.+.+....+...+.+ |+||
T Consensus       332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde  365 (386)
T COG4175         332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDE  365 (386)
T ss_pred             ---cccccccccCccchHHHHHHHHhcCCCcee-EEcC
Confidence               246677889999999999999998887776 5566

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=96.25  E-value=0.014  Score=61.76  Aligned_cols=90  Identities=10%  Similarity=0.042  Sum_probs=67.9

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---c-ccccccc---
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---A-VPLRKMI---  277 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~-~~V~dIM---  277 (464)
                      ..+++++|.|   +.++++++++. ++++.|++++....+|+|+. |.++|+||.+|++...-.+   + .+-.+.+   
T Consensus       254 ~~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~  328 (408)
T TIGR03520       254 NFDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI  328 (408)
T ss_pred             CCCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence            3457888864   57899999999 99999999999999999875 8899999999998764211   1 0111111   


Q ss_pred             ccCCcEecCCCCHHHHHHHHHh
Q 012416          278 IRRIPRVSEDMPLYDILNEFQK  299 (464)
Q Consensus       278 ~r~~~~V~e~~~l~eaL~~m~~  299 (464)
                      ....+.++..+++.++-+.|.-
T Consensus       329 ~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       329 DDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             CCCeEEEEeccCHHHHHHHhCC
Confidence            1234668889999999998853

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=95.19  E-value=0.014  Score=62.46  Aligned_cols=62  Identities=19%  Similarity=0.269  Sum_probs=55.0

Q ss_pred             cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      .-++..++++|.+  ++++++++++.+ ++.+.+.+++....||+|++ ++++|+++..|++....
T Consensus       192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi~  253 (451)
T COG2239         192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVIE  253 (451)
T ss_pred             CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHHH
Confidence            4567889999986  478999999998 99999999999999999976 89999999999987543

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=94.96  E-value=0.027  Score=57.95  Aligned_cols=59  Identities=17%  Similarity=0.331  Sum_probs=52.9

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      ++.+...+|+.  ..+++.+.+|+. .+.+.|...++.-+||++++ .+++|+|+.+|+++..
T Consensus       247 ~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l  305 (432)
T COG4109         247 PSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL  305 (432)
T ss_pred             CCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence            56788999995  568899999999 89999999999999999976 8999999999999764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=93.44  E-value=0.093  Score=54.85  Aligned_cols=57  Identities=19%  Similarity=0.464  Sum_probs=49.4

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      ..+.+.|.+  .+.++++++++. +++..+.++++. +||+|++ ++++|+|+..+++....
T Consensus       302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY  358 (363)
T ss_pred             Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            468888864  567899999998 999999999999 9999876 89999999999987653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=92.52  E-value=0.12  Score=54.23  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=52.8

Q ss_pred             cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (464)
Q Consensus       202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~  265 (464)
                      .=....+.++|+++.  ++.+.+.+++ ++-+.+.++.-.++||++++ |+++-+++..||.+.
T Consensus       167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN  226 (503)
T ss_pred             hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence            335677999999965  7889999998 89999999999999999876 999999999999864

>PRK11573 hypothetical protein; Provisional

Probab=91.94  E-value=0.49  Score=50.32  Aligned_cols=83  Identities=14%  Similarity=0.117  Sum_probs=61.3

Q ss_pred             cccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----c----cccccccccC
Q 012416          210 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----A----VPLRKMIIRR  280 (464)
Q Consensus       210 dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~----~~V~dIM~r~  280 (464)
                      ++|.   ++..++++.++. ++++.|++++..-.-|+|+. |...|+||..|++...-.+     +    ..+... ...
T Consensus       259 ~~~r---~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~  332 (413)
T PRK11573        259 RAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDG  332 (413)
T ss_pred             hhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCC
Confidence            4554   467899999998 99999999988888888875 8899999999998753211     1    112221 223


Q ss_pred             CcEecCCCCHHHHHHHHH
Q 012416          281 IPRVSEDMPLYDILNEFQ  298 (464)
Q Consensus       281 ~~~V~e~~~l~eaL~~m~  298 (464)
                      .+.|+..+++.++-+.+.
T Consensus       333 ~~~v~G~~~l~d~~~~l~  350 (413)
T PRK11573        333 SVIIDGTANVREINKAFN  350 (413)
T ss_pred             EEEEEeeeEHHHHHHHhC
Confidence            466899999999988874

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=91.04  E-value=0.36  Score=51.14  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      +.+++++|.+  +..++++++++. +++..+.++.+. +||+|++ |+++|+|+..+++.....
T Consensus       336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALDR  394 (400)
T ss_pred             CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHHh
Confidence            3467788864  567899999998 999999987766 9999876 999999999999887643

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=88.38  E-value=1.3  Score=47.35  Aligned_cols=41  Identities=10%  Similarity=0.152  Sum_probs=34.9

Q ss_pred             cccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.+++++|+.  ++..++.+.++.++.+.+.+++....||.|+
T Consensus       205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~  247 (429)
T COG1253         205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG  247 (429)
T ss_pred             CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC
Confidence            3467888753  4677999999999999999999999999985

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=86.10  E-value=2.3  Score=48.11  Aligned_cols=60  Identities=13%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC-CCcEEEEEEcchhcccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVD  266 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d-~d~iVGIVt~kDLl~~~  266 (464)
                      ..+.|+++|..  ++.++..+.|.. |+.+.+..+....+|++++. ..-++|.|..+.|....
T Consensus       586 h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll  646 (931)
T KOG0476|consen  586 HTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL  646 (931)
T ss_pred             eEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence            46789999984  899999999998 88887777669999999753 24478999999987653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=85.08  E-value=2.1  Score=42.95  Aligned_cols=83  Identities=17%  Similarity=0.209  Sum_probs=55.2

Q ss_pred             eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----------------ccccccccccC
Q 012416          218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----------------AVPLRKMIIRR  280 (464)
Q Consensus       218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----------------~~~V~dIM~r~  280 (464)
                      ++.|..|  ++ ||+++-     +++.|.++  |+++=+=+..+++..+.++                 ...+.+.|...
T Consensus       189 ivfVTHD--id-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         189 IVFVTHD--ID-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             EEEEecC--HH-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            4455444  45 676543     58888874  8999999988888765432                 12233443332


Q ss_pred             C----cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          281 I----PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       281 ~----~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .    -.++......+++..+...+...+||+|+
T Consensus       259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~  292 (309)
T COG1125         259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE  292 (309)
T ss_pred             ccccCCccccchhhHHHHHHHHhcCCceeEEECC
Confidence            2    12555666677899999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	464
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		4e-05

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 235 IMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDIL 294
           I+   HSR PVY  +  NIIG++L K+LL      A+ +R + +R    + E   L  +L
Sbjct: 33  IIETAHSRFPVYEDDRDNIIGILLAKDLLRYXLEPALDIRSL-VRPAVFIPEVKRLNVLL 91
Query: 295 NEFQKGHSHIAVV 307
            EF+   +H+A+V
Sbjct: 92  REFRASRNHLAIV 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	464
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	3e-28
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	2e-27
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	4e-27
3ocm_A	173	Putative membrane protein; structural genomics, PS	4e-26
3oco_A	153	Hemolysin-like protein containing CBS domains; str	1e-24
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	1e-23
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	6e-23
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	8e-22
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	5e-21
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	6e-21
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-06
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	3e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	5e-04

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  109 bits (274), Expect = 3e-28
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 169 RAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLT 228
           + +++  +     E    G + H+E  ++     L E+T    M P S    LDL+  L 
Sbjct: 9   QEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD 64

Query: 229 LDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRIPRVSED 287
              L  +M   HSR PV   N  +++G+I  K LLS     + + L   +++    V   
Sbjct: 65  -ANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVD-LVKNCNFVPNS 122

Query: 288 MPLYDILNEFQKGHSHIAVV 307
           +   ++L  F+   S +  V
Sbjct: 123 LSGMELLEHFRTTGSQMVFV 142

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  106 bits (267), Expect = 2e-27
 Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 169 RAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLT 228
             ++   +     +A +      D    +   L+ ++   +DAM   S+   L  + ++ 
Sbjct: 5   AEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 229 LDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS-VDYRDAVPLRKMIIRRIPRVSED 287
                 ++   HSR PV   +   ++G++  K+LL  +   +   L+  I+R    V E 
Sbjct: 61  -RITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKS-ILRPAVFVPEG 118

Query: 288 MPLYDILNEFQKGHSHIAVV 307
             L  +L EF++  +H+A+V
Sbjct: 119 KSLTALLKEFREQRNHMAIV 138

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score =  105 bits (264), Expect = 4e-27
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244
             G +   E  ++    E  EK  ++ M P +    +    +     L  +   G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYP 60

Query: 245 VYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSH 303
           V   N  +I+G + +++L +     + + L + I+R I  +SE++ +   L   +K    
Sbjct: 61  VCRKNKDDILGFVHIRDLYNQKINENKIELEE-ILRDIIYISENLTIDKALERIRKEKLQ 119

Query: 304 IAVV 307
           +A+V
Sbjct: 120 LAIV 123

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score =  102 bits (258), Expect = 4e-26
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 182 EAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHS 241
                     +E  +++G L L E++ +  MTP +    +++D          +    HS
Sbjct: 12  AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS 70

Query: 242 RVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGH 301
             PV  G+   ++G+   K+L++    +    R   +R    V E + +  +++  ++  
Sbjct: 71  FFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRN-RLRDPIIVHESIGILRLMDTLKRSR 129

Query: 302 SHIAVV 307
             + +V
Sbjct: 130 GQLVLV 135

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 98.3 bits (246), Expect = 1e-24
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 188 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYS 247
           +   ++   +  A E+ +K A D M   +    +D+D T+  D L   +   +SR PV +
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTA 60

Query: 248 -GNPTNIIGLILVKNLLS-VDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 305
             +   IIG     +++      D   +   I+R I  V E+M + D++ E       +A
Sbjct: 61  DNDKDKIIGYAYNYDIVRQARIDDKAKIST-IMRDIVSVPENMKVPDVMEEMSAHRVPMA 119

Query: 306 VV 307
           +V
Sbjct: 120 IV 121

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 94.8 bits (237), Expect = 1e-23
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL 262
             E+T  D M P S+   LD+   L    L  I+   HSR PVY  +  NIIG++L K+L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDL 60

Query: 263 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
           L      A+ +R  ++R    + E   L  +L EF+   +H+A+V
Sbjct: 61  LRYMLEPALDIRS-LVRPAVFIPEVKRLNVLLREFRASRNHLAIV 104

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 92.9 bits (232), Expect = 6e-23
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL 262
             +      MTP    F +D   T+  + L+       SR  VYS    NIIG +    L
Sbjct: 3   AQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLEL 61

Query: 263 LS--VDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
                       L   ++R I  V  +  L  + ++       +A+V
Sbjct: 62  FKMQQSGSGQKQLGA-VMRPIQVVLNNTALPKVFDQMMTHRLQLALV 107

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 89.8 bits (224), Expect = 8e-22
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264
           + +  D M P ++   +D++       +  +    H R+ +Y  +  + I ++ V+    
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR 59

Query: 265 VDYRDAVPLRKMIIRRIPR----VSEDMPLYDILNEFQKGHSHIAVV 307
           +   +     K I+ R       V E  PL   L +FQ+    + +V
Sbjct: 60  L-MTEKKEFTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLV 105

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 87.9 bits (219), Expect = 5e-21
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264
           +   +D M P S+  S+    T   + L A++   HSR PV   +  +++G++L K+LL 
Sbjct: 2   DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLP 60

Query: 265 VDYR---DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
           +  +   D+  ++K ++R    V E   L  +L EF+  H+H+A+V
Sbjct: 61  LILKADGDSDDVKK-LLRPATFVPESKRLNVLLREFRANHNHMAIV 105

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 87.5 bits (218), Expect = 6e-21
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264
           ++  +D M P S+  +L  + TL  + L+ I+   HSR PV S +  +I G+++ K+LL 
Sbjct: 2   DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP 60

Query: 265 --VDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307
                 +A  + K ++R    V E   +  +L EF+    H+A+V
Sbjct: 61  FMRSDAEAFSMDK-VLRTAVVVPESKRVDRMLKEFRSQRYHMAIV 104

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--------TNI 253
           +L E T    M    K   + +   L    L  +   G++ +PV   +           I
Sbjct: 10  QLLEATVGQFMIEADKVAHVQVGNNL-EHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 68

Query: 254 IGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310
           +  I     +  +  D + + ++++  IPR+  + P+          +  + V   +
Sbjct: 69  MNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVIN-NGFVCVENDE 124

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLI---- 257
           E  + T K  + P  K   +     L    L  +   G+S +PV   +   + GLI    
Sbjct: 7   EFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTM 64

Query: 258 LVKNLLSVDYRDAVPLRKMIIRRI-----PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310
           ++  +L ++  +   L  M +  +     PR+  D  L   +      H  + V   D
Sbjct: 65  MMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVN-HPFVCVENDD 121

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLI---- 257
           E  +   KD M    K   + +   L    L  ++  G+S +PV       + GLI    
Sbjct: 11  EFQQIFVKDLMISSEKVAHVQIGNGL-EHALLVLVKSGYSAIPVLDPM-YKLHGLISTAM 68

Query: 258 LVKNLLSVDYRDAVPLRKMII-----RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310
           ++  +L ++  +   L +M +     + IP +  +      L      H  I  V +D
Sbjct: 69  ILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTID-HPFICAVNED 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 43/304 (14%), Positives = 84/304 (27%), Gaps = 94/304 (30%)

Query: 209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN----IIGLIL------ 258
           KD ++    AF  + D     D   +I++       + S +  +    +   +L      
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 259 ----VKNLLSVDY-----------------------------RDAVPLRKMIIRRIPRVS 285
               V+ +L ++Y                              D     K  + R+    
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 286 EDMPLYDILNEFQK------------GHSHIAV-VYKD--LNEKKEGELF---KDNCKKP 327
           +   L   L E +             G + +A+ V     +  K + ++F     NC  P
Sbjct: 139 K---LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 328 RGQPEK----SSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCIL 383
               E       Q   N  + +  +   KL     Q   +        +K +  C   +L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR----RLLKSKPYENC-LLVL 250

Query: 384 D----------FENG----------PFPDFPSNDEAVGVITMEDVIEELLQEEILDETDE 423
                      F                DF S       I+++     L  +E+     +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLK 309

Query: 424 YVNI 427
           Y++ 
Sbjct: 310 YLDC 313

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 230 DTL-NAIMTM---GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV----PLRKMIIRRI 281
            T+  AI  M      ++PV   +  +++G++  + L++           P  K + +R+
Sbjct: 402 ATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNKRV 461

Query: 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKE 316
            R++E   L  +    +   S   ++       K 
Sbjct: 462 IRLNESEILGKLARVLEVDPS--VLILGKNPAGKV 494

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	464
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.95
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.93
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.93
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.92
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.91
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.88
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.87
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.86
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.86
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.85
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.85
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.84
4esy_A	170	CBS domain containing membrane protein; structural	99.83
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.8
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.79
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.77
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.76
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.76
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.76
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.75
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.75
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.73
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.73
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.73
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.73
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.73
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.72
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.72
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.72
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.71
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.71
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.71
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.7
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.7
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.69
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.69
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.68
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.68
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.68
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.68
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.67
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.67
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.66
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.65
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.64
3ddj_A	296	CBS domain-containing protein; structural genomics	99.64
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.62
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.61
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.6
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.59
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.59
3ddj_A	296	CBS domain-containing protein; structural genomics	99.58
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.57
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.57
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.56
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.56
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.55
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.53
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.53
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.52
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.48
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.48
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.46
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.45
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.44
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.15
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.12
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.77
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.56
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.55
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.28
4esy_A	170	CBS domain containing membrane protein; structural	98.26
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.13
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.1
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.08
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.08
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.04
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.02
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.01
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.01
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.0
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	97.98
1pvm_A	184	Conserved hypothetical protein TA0289; structural	97.97
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.97
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.96
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.96
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.96
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.95
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	97.94
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.93
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.93
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.92
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.92
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.91
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.91
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.9
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.9
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.89
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.87
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.87
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.86
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	97.85
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.85
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.84
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	97.84
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.8
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.8
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	97.79
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.79
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.79
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.78
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.72
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.69
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.68
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.6
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.54
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.43
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.41
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.35
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.32
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.18
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.17
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.15
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.93
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.76
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.73
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.73

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.95  E-value=5.8e-28  Score=220.89  Aligned_cols=140  Identities=24%  Similarity=0.438  Sum_probs=94.4

Q ss_pred             ccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEee
Q 012416          165 VLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP  244 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~P  244 (464)
                      ..+|++||+.+++    ++.+.|.++++|++++++++++.+.+|+++|+|+.+++++++++|+. ++++.|.+++++++|
T Consensus         5 ~~~t~~el~~l~~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~p   79 (172)
T 3lhh_A            5 DNVTQEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFP   79 (172)
T ss_dssp             ------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEEE
T ss_pred             ccCCHHHHHHHHH----HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEE
Confidence            5679999999998    45678999999999999999999999999999988999999999998 999999999999999


Q ss_pred             EEecCCCcEEEEEEcchhccccccc-ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          245 VYSGNPTNIIGLILVKNLLSVDYRD-AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       245 Vvd~d~d~iVGIVt~kDLl~~~~~~-~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      |++++.++++|+|+.+|++...... ..++.++| ++++++++++++.++++.|.+++.+.+||+|+
T Consensus        80 Vvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~  145 (172)
T 3lhh_A           80 VCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE  145 (172)
T ss_dssp             EESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT
T ss_pred             EEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence            9986547999999999999875433 56899998 99999999999999999999999999999998

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.93  E-value=4.4e-26  Score=204.94  Aligned_cols=139  Identities=20%  Similarity=0.366  Sum_probs=127.2

Q ss_pred             cCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeE
Q 012416          166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV  245 (464)
Q Consensus       166 ~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PV  245 (464)
                      .+|++||+.+++    +++++|.++++|++++++++++.+.+|+++|+|+.+++++++++|+. ++++.|.+++++++||
T Consensus         2 ~~t~~el~~li~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHH----HHHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHH----hHHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            378999999998    45678999999999999999999999999999988999999999998 9999999999999999


Q ss_pred             EecCCCcEEEEEEcchhcccccc-cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          246 YSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       246 vd~d~d~iVGIVt~kDLl~~~~~-~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.++++|+|+.+|++..... ...++.++| ++++++++++++.++++.|.+++.+.+||+|+
T Consensus        77 vd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~  141 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLKYMFNPEQFHLKSIL-RPAVFVPEGKSLTALLKEFREQRNHMAIVIDE  141 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHC-BCCCEEETTSBHHHHHHHHHHTTCCEEEEECT
T ss_pred             EcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHc-CCCEEECCCCCHHHHHHHHHhcCCeEEEEECC
Confidence            98764599999999999987544 356899996 66899999999999999999999999999998

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.93  E-value=4.1e-26  Score=210.00  Aligned_cols=154  Identities=19%  Similarity=0.295  Sum_probs=136.2

Q ss_pred             cccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchh
Q 012416          183 AGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL  262 (464)
Q Consensus       183 ~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDL  262 (464)
                      ++++|.++++|+++++++++|.+.+|+++|+|+.+++++++++|+. ++++.|.+++++++||++++.++++|+|+.+|+
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            4467999999999999999999999999999988999999999998 999999999999999998655799999999999


Q ss_pred             cccccc-cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCccccccccccCCCCCCCCCCcCccccccc
Q 012416          263 LSVDYR-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNG  341 (464)
Q Consensus       263 l~~~~~-~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (464)
                      +..... ...++.  |++++++|++++++.++++.|.+++.+.+||+|+                               
T Consensus        92 ~~~~~~~~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-------------------------------  138 (173)
T 3ocm_A           92 VADLITEGRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE-------------------------------  138 (173)
T ss_dssp             HHHHHHHSSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-------------------------------
T ss_pred             HHHHhcCCcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-------------------------------
Confidence            976532 245677  5789999999999999999999999999999998                               


Q ss_pred             ccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCCCCCCceEEEEeHHHHHHHHHhccccccc
Q 012416          342 VTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDET  421 (464)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vt~~d~~~~~~~~~~~~~~  421 (464)
                                                                            +|+++||||++|+++.+. +++.||.
T Consensus       139 ------------------------------------------------------~g~lvGiIT~~Dil~~l~-~~i~de~  163 (173)
T 3ocm_A          139 ------------------------------------------------------FGAIEGLVTPIDVFEAIA-GEFPDED  163 (173)
T ss_dssp             ------------------------------------------------------TCCEEEEECHHHHHHHHH-CCCCCTT
T ss_pred             ------------------------------------------------------CCCEEEEEeHHHHHHHHh-CcCCCcc
Confidence                                                                  479999999999999999 7999998


Q ss_pred             hhhH
Q 012416          422 DEYV  425 (464)
Q Consensus       422 ~~~~  425 (464)
                      |++.
T Consensus       164 ~~~~  167 (173)
T 3ocm_A          164 ELPD  167 (173)
T ss_dssp             SCC-
T ss_pred             ccHh
Confidence            8643

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.92  E-value=4.2e-25  Score=195.81  Aligned_cols=124  Identities=20%  Similarity=0.413  Sum_probs=100.3

Q ss_pred             cCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416          185 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  264 (464)
Q Consensus       185 ~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~  264 (464)
                      ++|.++++|++++++++++.+.+|+++|+|+.+++++++++|+. ++++.|.+++++++||++++.|+++|+|+.+|++.
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~   80 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN   80 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence            45899999999999999999999999999988999999999998 99999999999999999865479999999999987


Q ss_pred             ccccc-ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          265 VDYRD-AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       265 ~~~~~-~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..... ..++.++| ++++++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  126 (148)
T 3lv9_A           81 QKINENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE  126 (148)
T ss_dssp             HHHHHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHhcCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence            65433 57899998 99999999999999999999999999999998

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.91  E-value=6.9e-25  Score=196.01  Aligned_cols=148  Identities=26%  Similarity=0.417  Sum_probs=123.8

Q ss_pred             CChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEE-ecCCCcEEEEEEcchhccccc
Q 012416          189 LTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY-SGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       189 L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVv-d~d~d~iVGIVt~kDLl~~~~  267 (464)
                      ++++|++++++++.+.+.+|+++|+|+.+++++++++|+. ++++.|.+++++++||+ +++.++++|+|+.+|++....
T Consensus         3 l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~   81 (153)
T 3oco_A            3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR   81 (153)
T ss_dssp             -----CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh
Confidence            6788999999999999999999999988999999999998 99999999999999999 543479999999999987643


Q ss_pred             cc-ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCccccccccccCCCCCCCCCCcCcccccccccccc
Q 012416          268 RD-AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAG  346 (464)
Q Consensus       268 ~~-~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (464)
                      .. ..+++++| ++++++++++++.++++.|.+++.+.+||+|+                                    
T Consensus        82 ~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~------------------------------------  124 (153)
T 3oco_A           82 IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE------------------------------------  124 (153)
T ss_dssp             HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT------------------------------------
T ss_pred             cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC------------------------------------
Confidence            32 56899998 99999999999999999999999999999998                                    


Q ss_pred             cccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCCCCCCceEEEEeHHHHHHHHHhccccccchhh
Q 012416          347 QNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEY  424 (464)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vt~~d~~~~~~~~~~~~~~~~~  424 (464)
                                                                       +|+++||||..|+++.+. +++.||.|..
T Consensus       125 -------------------------------------------------~g~~vGivt~~dil~~l~-~~~~de~~~~  152 (153)
T 3oco_A          125 -------------------------------------------------YGGTSGIITDKDVYEELF-GNLRDEQDDE  152 (153)
T ss_dssp             -------------------------------------------------TSCEEEEECHHHHHHHHH-C---------
T ss_pred             -------------------------------------------------CCCEEEEeeHHHHHHHHh-ccCCCcccCC
Confidence                                                             489999999999999999 7999998753

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.88  E-value=1.5e-22  Score=177.50  Aligned_cols=104  Identities=30%  Similarity=0.509  Sum_probs=93.6

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc---ccccccccccccCC
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY---RDAVPLRKMIIRRI  281 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~---~~~~~V~dIM~r~~  281 (464)
                      +.+|+++|+|+.+++++++++|+. ++++.|.+++++++||++++.++++|+|+.+|+++...   ....+++++| +++
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m-~~~   79 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL-RPA   79 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC-BCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc-CCC
Confidence            678999999988999999999998 99999999999999999865479999999999997654   2356899996 568


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~  108 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRANHNHMAIVIDE  108 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCCEEEEECT
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeC
Confidence            99999999999999999999999999998

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.87  E-value=8.2e-22  Score=171.08  Aligned_cols=106  Identities=34%  Similarity=0.539  Sum_probs=95.8

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP  282 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~  282 (464)
                      ..+.+|+++|+|+.+++++++++|+. ++++.|.+++++++||++++.++++|+|+.+|+++.......+++++| +++.
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m-~~~~   79 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLV-RPAV   79 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGC-BCCC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHh-CCCe
Confidence            46789999999988999999999998 999999999999999998644799999999999987655567899996 6788


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~v~~~~~l~~~~~~m~~~~~~~~pVvd~  107 (129)
T 3jtf_A           80 FIPEVKRLNVLLREFRASRNHLAIVIDE  107 (129)
T ss_dssp             EEETTCBHHHHHHHHHTSSCCEEEEECC
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEeC
Confidence            9999999999999999999999999998

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.86  E-value=4.1e-22  Score=180.25  Aligned_cols=111  Identities=16%  Similarity=0.240  Sum_probs=95.7

Q ss_pred             HHHHhh-cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc------
Q 012416          196 IIAGAL-ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------  268 (464)
Q Consensus       196 ~I~~vl-~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~------  268 (464)
                      |+.+.+ +|-..+++++|+|+.+++++++++|+. +|++.|.+++++++||+|++ ++++|+|+.+|++++...      
T Consensus         4 mi~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~~   81 (156)
T 3k6e_A            4 MIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQE   81 (156)
T ss_dssp             HHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHH
T ss_pred             hHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccccc
Confidence            444444 355668999999999999999999998 99999999999999999865 899999999999865322      


Q ss_pred             --cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 --DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 --~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                        ...++.++|.+++.++++++++.++++.|.+++  ++||+|+
T Consensus        82 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~  123 (156)
T 3k6e_A           82 IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA  123 (156)
T ss_dssp             HHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECT
T ss_pred             cccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEec
Confidence              246899999999999999999999999999775  5999998

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.86  E-value=6e-22  Score=172.59  Aligned_cols=104  Identities=17%  Similarity=0.322  Sum_probs=93.6

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccC
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRR  280 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~  280 (464)
                      +++|+++|+|+.+++++++++|+. ++++.|.+++++++||++++.++++|+|+.+|+++....+    ..++.++| ++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cC
Confidence            368999999988999999999998 9999999999999999976448999999999998775443    24688986 88


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       281 ~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++++.++++.|.+++.+.+||+|+
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~  108 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVDE  108 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEECT
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEcC
Confidence            999999999999999999999999999998

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.85  E-value=1.5e-20  Score=177.77  Aligned_cols=128  Identities=9%  Similarity=0.095  Sum_probs=114.8

Q ss_pred             CCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHc---CCcEe
Q 012416          167 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM---GHSRV  243 (464)
Q Consensus       167 ~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~---~~Sr~  243 (464)
                      +++++.+.++.          .++++|++++++++.+++.+|+++|+|  +++++++++|+. ++++.|.++   +++.+
T Consensus        25 l~~~~~~~~l~----------~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~   91 (205)
T 3kxr_A           25 LPESFTDRALA----------QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNL   91 (205)
T ss_dssp             SCHHHHHHHHH----------HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEE
T ss_pred             CCHHHHHHHHH----------cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEE
Confidence            45566666664          378999999999999999999999997  789999999998 999999987   78999


Q ss_pred             eEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          244 PVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       244 PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ||++++ ++++|+|+.+|++....  ..+++++|.+++.+|++++++.++++.|++++.+.+||+|+
T Consensus        92 ~Vvd~~-~~lvGivt~~dll~~~~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~  155 (205)
T 3kxr_A           92 FIVDEA-DKYLGTVRRYDIFKHEP--HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD  155 (205)
T ss_dssp             EEECTT-CBEEEEEEHHHHTTSCT--TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT
T ss_pred             EEEcCC-CeEEEEEEHHHHHhCCC--cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC
Confidence            999865 89999999999987643  45899999889999999999999999999999999999998

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.85  E-value=1.2e-21  Score=169.96  Aligned_cols=107  Identities=22%  Similarity=0.336  Sum_probs=93.2

Q ss_pred             cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--cccccccccc
Q 012416          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIR  279 (464)
Q Consensus       202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r  279 (464)
                      +|.+.+|+++|+|+.+++++++++|+. ++++.|.+++++++||++++.++++|+|+.+|++......  ..+++++| +
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m-~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM-R   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS-E
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh-c
Confidence            467899999999988999999999998 9999999999999999986547999999999998765432  46899997 7


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++.++++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~  110 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDE  110 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECT
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC
Confidence            7899999999999999999999999999998

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.84  E-value=6.6e-21  Score=164.66  Aligned_cols=104  Identities=30%  Similarity=0.513  Sum_probs=93.1

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--cccccccccccCCc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIP  282 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--~~~~V~dIM~r~~~  282 (464)
                      +.+|+++|+|+.+++++++++|+. ++++.|.+++++++||++++.|+++|+|+.+|+++....  ...+++++| +++.
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m-~~~~   79 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RTAV   79 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC-BCCC
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc-CCCe
Confidence            678999999987899999999998 999999999999999998654799999999999976432  356899996 6688


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~  107 (127)
T 3nqr_A           80 VVPESKRVDRMLKEFRSQRYHMAIVIDE  107 (127)
T ss_dssp             EEETTCBHHHHHHHHHHTTCCEEEEECT
T ss_pred             EECCCCcHHHHHHHHHhcCCeEEEEEeC
Confidence            9999999999999999999999999998

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.83  E-value=1.9e-20  Score=170.13  Aligned_cols=113  Identities=16%  Similarity=0.252  Sum_probs=97.8

Q ss_pred             hHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---
Q 012416          192 DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---  268 (464)
Q Consensus       192 ~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---  268 (464)
                      .++..+.+.  +.+++|+|+|++  +++++++++|+. ++++.|.+++++++||+|++ |+++|+|+.+|+++....   
T Consensus         6 ~~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~   79 (170)
T 4esy_A            6 ARRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWI   79 (170)
T ss_dssp             HHHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTH
T ss_pred             HHHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccc
Confidence            344455544  468999999985  789999999999 99999999999999999876 899999999999865321   


Q ss_pred             -----------------------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 -----------------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 -----------------------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                             ...++.++|.+++.+|++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~  144 (170)
T 4esy_A           80 YEASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD  144 (170)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET
T ss_pred             cchhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC
Confidence                                   135788999999999999999999999999999999999987

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.80  E-value=2.2e-19  Score=176.61  Aligned_cols=118  Identities=13%  Similarity=0.150  Sum_probs=108.3

Q ss_pred             CCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHc-----CCcEeeEEecCCCcEEEEEEcch
Q 012416          187 GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM-----GHSRVPVYSGNPTNIIGLILVKN  261 (464)
Q Consensus       187 G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~-----~~Sr~PVvd~d~d~iVGIVt~kD  261 (464)
                      |.++..++..+.+++.+.+.+|+++|+|  +++++++++|+. ++++.|.++     +++++||++++ ++++|+|+.+|
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~d  191 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRD  191 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHH
Confidence            3578899999999999999999999997  788999999998 999999987     78999999875 89999999999


Q ss_pred             hcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          262 LLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       262 Ll~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++....  ..++.++|.+++++|++++++.++++.|++++.+.+||+|+
T Consensus       192 ll~~~~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  238 (278)
T 2yvy_A          192 LIVADP--RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE  238 (278)
T ss_dssp             HHHSCT--TCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HhcCCC--CCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC
Confidence            986533  45899998899999999999999999999999999999998

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.79  E-value=6.4e-19  Score=186.61  Aligned_cols=135  Identities=13%  Similarity=0.142  Sum_probs=119.2

Q ss_pred             cCCHHHHHHHHhhcccccccC---------CCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHH
Q 012416          166 LLRRAELKTFVNFHGNEAGKG---------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIM  236 (464)
Q Consensus       166 ~~s~eEL~~lve~~~~e~~~~---------G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~  236 (464)
                      .++++|+..+++.    ..++         +.+++++++++++++++++.+|+++|+|  +++++++++|+. ++++.++
T Consensus       110 ~l~~dd~~~ll~~----l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQA----VRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHH----HHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHh----CCHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            3567777777763    2334         6899999999999999999999999996  899999999998 9999999


Q ss_pred             Hc-----CCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          237 TM-----GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       237 ~~-----~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++     +++++||+|++ ++++|+|+.+|++....  +.+++++|.+++.+|++++++.++++.|++++.+.+||+|+
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~~--~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe  258 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE  258 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSCT--TSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCCC--CCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC
Confidence            86     47999999876 89999999999987533  45899999899999999999999999999999999999998

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.76  E-value=3.1e-18  Score=150.39  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=93.6

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc----------------
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----------------  267 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~----------------  267 (464)
                      ...+|+++|+|+.+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....                
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            4578999999877899999999998 99999999999999999875 89999999999986421                


Q ss_pred             -ccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          268 -RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       268 -~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                       ....++.++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~  124 (152)
T 4gqw_A           81 KTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS  124 (152)
T ss_dssp             ---CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT
T ss_pred             HhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC
Confidence             1246899999888999999999999999999999999999997

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.76  E-value=3.3e-18  Score=152.09  Aligned_cols=109  Identities=20%  Similarity=0.262  Sum_probs=92.0

Q ss_pred             HHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---------
Q 012416          198 AGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------  268 (464)
Q Consensus       198 ~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---------  268 (464)
                      .+...+.+.+|+++|+|+.+++++++++|+. ++++.|.+++++++||++++ |+++|+|+.+|++.....         
T Consensus         3 ~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            3 WEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             -------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             hhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHHh
Confidence            4556678899999999867888999999998 99999999999999999865 899999999999875432         


Q ss_pred             cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 ~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ...++.++|.++++++++++++.++++.|.+++.  +||+|+
T Consensus        81 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~  120 (157)
T 2emq_A           81 ETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND  120 (157)
T ss_dssp             GTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS
T ss_pred             cCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC
Confidence            2468999998999999999999999999999976  999997

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.76  E-value=6.9e-18  Score=167.10  Aligned_cols=117  Identities=17%  Similarity=0.171  Sum_probs=107.7

Q ss_pred             CCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHc-----CCcEeeEEecCCCcEEEEEEcchh
Q 012416          188 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM-----GHSRVPVYSGNPTNIIGLILVKNL  262 (464)
Q Consensus       188 ~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~-----~~Sr~PVvd~d~d~iVGIVt~kDL  262 (464)
                      .++.+++..+++++.+.+.+|+++|++  +++++++++|+. ++++.|.++     +++++||++++ ++++|+|+.+|+
T Consensus       119 ~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dl  194 (286)
T 2oux_A          119 LLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDL  194 (286)
T ss_dssp             TSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHH
T ss_pred             cCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHH
Confidence            478889999999999999999999986  788999999998 999999987     88999999875 899999999999


Q ss_pred             cccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          263 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       263 l~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +....  ..++.++|.+++++|++++++.++++.|.+++.+.+||+|+
T Consensus       195 l~~~~--~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~  240 (286)
T 2oux_A          195 IVNDD--DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY  240 (286)
T ss_dssp             TTSCT--TSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HcCCC--CCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC
Confidence            87643  45899999899999999999999999999999999999998

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.75  E-value=2e-18  Score=152.60  Aligned_cols=106  Identities=17%  Similarity=0.198  Sum_probs=94.2

Q ss_pred             hcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---------ccc
Q 012416          201 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAV  271 (464)
Q Consensus       201 l~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---------~~~  271 (464)
                      ..|.+.+|+++|+|+.+++++++++|+. ++++.|.+++++++||+|++ |+++|+|+.+|++.....         ...
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~   87 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEEM   87 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGGC
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhcC
Confidence            3467889999999877889999999998 99999999999999999875 899999999999865421         246


Q ss_pred             ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++.++|.++++++++++++.++++.|.+++.  +||+|+
T Consensus        88 ~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~  124 (150)
T 3lqn_A           88 KVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNE  124 (150)
T ss_dssp             BGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECT
T ss_pred             CHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECC
Confidence            8999998899999999999999999999986  999997

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.75  E-value=3.2e-18  Score=145.59  Aligned_cols=101  Identities=12%  Similarity=0.246  Sum_probs=92.3

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEec
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  285 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~  285 (464)
                      .+|+++|++  ++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++........++.++|.+++.+++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~   76 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAH   76 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEE
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEEC
Confidence            368999996  678899999998 99999999999999999865 89999999999998765555689999989999999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          286 EDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       286 e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++.++++.|.+++.+.+||+|+
T Consensus        77 ~~~~l~~~~~~~~~~~~~~l~Vvd~  101 (122)
T 3kpb_A           77 EDEPVDHVAIKMSKYNISGVPVVDD  101 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEECC
Confidence            9999999999999999999999998

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.73  E-value=2.4e-17  Score=143.36  Aligned_cols=105  Identities=13%  Similarity=0.275  Sum_probs=92.5

Q ss_pred             hcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc-cccc---cccccccc
Q 012416          201 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS-VDYR---DAVPLRKM  276 (464)
Q Consensus       201 l~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~-~~~~---~~~~V~dI  276 (464)
                      +.|.+.+|+++|++  +++++++++|+. ++++.|.+++++.+||++++ |+++|+|+.+|+++ ....   ...++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence            46788999999985  778899999998 99999999999999999865 89999999999973 3221   24689999


Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       277 M~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      |.++++++++++++.++++.|.+++.+.+ |+|+
T Consensus        78 m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~  110 (138)
T 2yzi_A           78 MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE  110 (138)
T ss_dssp             CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE
T ss_pred             hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC
Confidence            88999999999999999999999999999 9997

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=5.8e-18  Score=152.76  Aligned_cols=110  Identities=9%  Similarity=0.124  Sum_probs=97.6

Q ss_pred             HhhcccccccccccccC-cceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----cccc
Q 012416          199 GALELTEKTAKDAMTPI-SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVP  272 (464)
Q Consensus       199 ~vl~l~~itV~dIMtPR-~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~  272 (464)
                      ....+...+|+++|+|+ .+++++++++|+. ++++.|.+++++.+||+|++ |+++|+|+.+|+++....     ...+
T Consensus        17 ~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~   94 (165)
T 3fhm_A           17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQS   94 (165)
T ss_dssp             CCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTSB
T ss_pred             hhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccCC
Confidence            44567789999999984 5688999999998 99999999999999999865 899999999999875322     2468


Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        95 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  132 (165)
T 3fhm_A           95 VSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN  132 (165)
T ss_dssp             GGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence            99999899999999999999999999999999999997

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.73  E-value=2.1e-17  Score=142.83  Aligned_cols=103  Identities=17%  Similarity=0.239  Sum_probs=92.3

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---ccccccccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIR  279 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---~~~~V~dIM~r  279 (464)
                      |.+.+|+++|++  +++++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++.....   ...++.++|.+
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC
Confidence            467899999987  578899999998 999999999999999998 4 899999999999865432   24689999888


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++.++++++++.++++.|.+++.+.+||+|+
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~  106 (133)
T 2ef7_A           76 SLITIREDSPITGALALMRQFNIRHLPVVDD  106 (133)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEECC
Confidence            9999999999999999999999999999997

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.73  E-value=9.4e-18  Score=151.95  Aligned_cols=104  Identities=17%  Similarity=0.192  Sum_probs=92.9

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc------------------
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD------------------  266 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~------------------  266 (464)
                      ..+|+++|+|+.+++++++++|+. ++++.|.+++++++||++++ ++++|+|+.+|+++..                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            468999999877899999999998 99999999999999999875 8999999999998531                  


Q ss_pred             -------------cccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          267 -------------YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       267 -------------~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                   .....++.++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  137 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA  137 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT
T ss_pred             hhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC
Confidence                         11245799999888999999999999999999999999999997

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.73  E-value=6.7e-18  Score=149.64  Aligned_cols=103  Identities=22%  Similarity=0.212  Sum_probs=93.9

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccccCC
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRI  281 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~r~~  281 (464)
                      .+|+++|+|+.+++++++++|+. ++++.|.+++++.+||++++ |+++|+|+.+|+++....    ...++.++|.+++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCC
Confidence            58999999877889999999998 99999999999999999865 899999999999876433    2468999998999


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++++++++.++++.|.+++.+.+||+|+
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  134 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVADG  134 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEecC
Confidence            99999999999999999999999999998

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.72  E-value=1.8e-17  Score=142.98  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=92.4

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---ccccccccccC
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRR  280 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~~~V~dIM~r~  280 (464)
                      .+.+|+++|++  ++.++++++++. ++++.|.+++++.+||+++  |+++|+|+.+|+++...+.   ..++.++|.++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   77 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLET   77 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBC
T ss_pred             cceEHHHhhcC--CcceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCC
Confidence            56899999986  577899999998 9999999999999999986  8999999999999875443   25699999899


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       281 ~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++++.++++.|.+++.+.+||+|+
T Consensus        78 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~  107 (128)
T 3gby_A           78 VRSYRPGEQLFDNLISVAAAKCSVVPLADE  107 (128)
T ss_dssp             CCCBCTTSBGGGSHHHHHHCSSSEEEEECT
T ss_pred             CcEECCCCCHHHHHHHHHhCCCcEEEEECC
Confidence            999999999999999999999999999997

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.72  E-value=1.2e-17  Score=149.36  Aligned_cols=105  Identities=19%  Similarity=0.308  Sum_probs=92.9

Q ss_pred             cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---------cccc
Q 012416          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVP  272 (464)
Q Consensus       202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---------~~~~  272 (464)
                      .+.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||+|++ ++++|+|+.+|++.....         ...+
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence            567899999999877888999999998 99999999999999999875 799999999999875422         2468


Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.++|.+++.++++++++.++++.|.+++.  +||+|+
T Consensus        88 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~  123 (159)
T 1yav_A           88 VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND  123 (159)
T ss_dssp             HHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT
T ss_pred             HHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC
Confidence            999988899999999999999999998876  999997

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.72  E-value=2.6e-17  Score=142.86  Aligned_cols=101  Identities=10%  Similarity=0.181  Sum_probs=90.6

Q ss_pred             ccccccccC-cceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc-ccc----ccccccccccccC
Q 012416          207 TAKDAMTPI-SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS-VDY----RDAVPLRKMIIRR  280 (464)
Q Consensus       207 tV~dIMtPR-~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~-~~~----~~~~~V~dIM~r~  280 (464)
                      +|+++|+|+ .+++++++++|+. ++++.|.+++++.+||++ + ++++|+|+.+|+++ ...    ....++.++|.++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   83 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQ   83 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCS
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCC
Confidence            899999976 6889999999998 999999999999999998 4 89999999999985 221    1256899999899


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       281 ~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.++++++++.++++.|.+++.+.+||+|+
T Consensus        84 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  113 (135)
T 2rc3_A           84 VAYVDLNNTNEDCMALITEMRVRHLPVLDD  113 (135)
T ss_dssp             CCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             CeEECCCCcHHHHHHHHHHhCCCEEEEEeC
Confidence            999999999999999999999999999995

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.71  E-value=3.3e-17  Score=142.26  Aligned_cols=104  Identities=13%  Similarity=0.277  Sum_probs=91.6

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchh-cccccc---cccccccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL-LSVDYR---DAVPLRKMII  278 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDL-l~~~~~---~~~~V~dIM~  278 (464)
                      |.+.+|+++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+ +.....   ...++.++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHhC
Confidence            567899999986  677899999998 99999999999999999865 899999999999 764332   2468999988


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCC-----CcEEEEEec
Q 012416          279 RRIPRVSEDMPLYDILNEFQKGH-----SHIAVVYKD  310 (464)
Q Consensus       279 r~~~~V~e~~~l~eaL~~m~~~~-----~~~a~VVDe  310 (464)
                      +++.++++++++.++++.|.+++     .+.+||+|+
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~  117 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK  117 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC
Confidence            89999999999999999999999     999999997

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.71  E-value=2.9e-17  Score=146.38  Aligned_cols=102  Identities=9%  Similarity=0.153  Sum_probs=91.3

Q ss_pred             cccccccccC----cceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----cccccccc
Q 012416          206 KTAKDAMTPI----SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKM  276 (464)
Q Consensus       206 itV~dIMtPR----~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~dI  276 (464)
                      .+|+|+|+|+    .+++++++++|+. ++++.|.+++++.+||.+ + ++++|+|+.+|+++....     ...++.++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD-G-DDIAGIVTERDYARKVVLQERSSKATRVEEI   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES-S-SSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee-C-CEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence            5799999987    6788999999998 999999999999999954 3 899999999999875422     24689999


Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       277 M~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      |.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus        84 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  117 (157)
T 4fry_A           84 MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDG  117 (157)
T ss_dssp             SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence            9889999999999999999999999999999996

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.71  E-value=4.2e-17  Score=142.74  Aligned_cols=101  Identities=11%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCC--cEEEEEEcchhcccccc---ccccccccccc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT--NIIGLILVKNLLSVDYR---DAVPLRKMIIR  279 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d--~iVGIVt~kDLl~~~~~---~~~~V~dIM~r  279 (464)
                      ..+|+++|++  +++++++++|+. ++++.|.+++++++||++++ +  +++|+|+.+|++.....   ...++.++|.+
T Consensus         4 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~   79 (141)
T 2rih_A            4 AIRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIANS   79 (141)
T ss_dssp             -CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBC
T ss_pred             ceEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCC
Confidence            3689999986  788999999998 99999999999999999875 6  89999999999876422   24689999989


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++ ++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~  109 (141)
T 2rih_A           80 PITVLDTD-PVHVAAEKMRRHNIRHVVVVNK  109 (141)
T ss_dssp             CCEEETTS-BHHHHHHHHHHHTCSEEEEECT
T ss_pred             CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC
Confidence            99999999 9999999999999999999997

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.70  E-value=7.8e-17  Score=144.46  Aligned_cols=103  Identities=17%  Similarity=0.256  Sum_probs=91.6

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII  278 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~  278 (464)
                      +.+.+|+++|++  . +++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.....    ...++.++|.
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   88 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMT   88 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSE
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHc
Confidence            367899999985  3 4899999998 99999999999999999865 899999999999875421    2468999988


Q ss_pred             c--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          279 R--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       279 r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +  ++.++++++++.++++.|.+++.+.+||+|+
T Consensus        89 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  122 (159)
T 3fv6_A           89 RMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD  122 (159)
T ss_dssp             ETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE
T ss_pred             CCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence            7  8899999999999999999999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.70  E-value=4.5e-17  Score=162.24  Aligned_cols=123  Identities=12%  Similarity=0.141  Sum_probs=105.3

Q ss_pred             CCChhHHHHHHHhhccc-ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          188 DLTHDETTIIAGALELT-EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       188 ~L~~~E~~~I~~vl~l~-~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      .++++|+++++++++|- +.+|+|+|+|+.+++++++++|+. ++++.|.+++++++||++++.++++|+|+.+|++...
T Consensus         3 ~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~   81 (334)
T 2qrd_G            3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI   81 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHH
Confidence            46678999999999955 499999999999999999999998 9999999999999999997668999999999998643


Q ss_pred             c--------cc------ccccc-------cccccCC--cEecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 012416          267 Y--------RD------AVPLR-------KMIIRRI--PRVSEDMPLYDILNEFQKGHSHIAVVYKDL  311 (464)
Q Consensus       267 ~--------~~------~~~V~-------dIM~r~~--~~V~e~~~l~eaL~~m~~~~~~~a~VVDey  311 (464)
                      .        ..      ..++.       ++|.+++  .++++++++.++++.|.+++.+.+||+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~  149 (334)
T 2qrd_G           82 KYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD  149 (334)
T ss_dssp             HHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE
T ss_pred             HHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC
Confidence            1        11      22222       3466777  899999999999999999999999999984

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.69  E-value=1e-16  Score=136.50  Aligned_cols=100  Identities=16%  Similarity=0.216  Sum_probs=89.3

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccccCC
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRI  281 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~r~~  281 (464)
                      ++|+++|++  ++.++++++++. ++++.|.+++++++||+| + |+++|+|+.+|+++....    ...++.++|.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~   75 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDL   75 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGG
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCC
Confidence            368999986  678899999998 999999999999999998 4 899999999999865422    2468999988899


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++++++++.++++.|.+++.+.+||+|+
T Consensus        76 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~  104 (125)
T 1pbj_A           76 VTISPRATIKEAAEKMVKNVVWRLLVEED  104 (125)
T ss_dssp             GEECTTSCHHHHHHHHHHHTCSEEEEEET
T ss_pred             eEECCCCCHHHHHHHHHhcCCcEEEEEEC
Confidence            99999999999999999999999999997

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.69  E-value=5.9e-17  Score=148.88  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=91.4

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-----ccccccccccccC
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRR  280 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-----~~~~~V~dIM~r~  280 (464)
                      .+|+++|++  +++++++++|+. ++++.|.+++++++||++++ |+++|+|+.+|++....     ....++.++|.++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~   84 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   84 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCC
Confidence            789999985  788999999998 99999999999999999865 89999999999987543     1246899998889


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       281 ~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++++.++++.|.+++.+.+||+|+
T Consensus        85 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  114 (184)
T 1pvm_A           85 IPKVKSDYDVKDVAAYLSENGLERCAVVDD  114 (184)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CcEECCCCCHHHHHHHHHHcCCcEEEEEcC
Confidence            999999999999999999999999999998

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.68  E-value=9.4e-17  Score=146.17  Aligned_cols=105  Identities=19%  Similarity=0.246  Sum_probs=92.0

Q ss_pred             cccccccccccCcc--eEEE--cCCCChHHHHHHHHHHcCCcEeeEE--ecCCCcEEEEEEcchhccccc----------
Q 012416          204 TEKTAKDAMTPISK--AFSL--DLDATLTLDTLNAIMTMGHSRVPVY--SGNPTNIIGLILVKNLLSVDY----------  267 (464)
Q Consensus       204 ~~itV~dIMtPR~d--vvtV--~~d~tl~eeal~~m~~~~~Sr~PVv--d~d~d~iVGIVt~kDLl~~~~----------  267 (464)
                      .+.+|+++|+|..+  ++++  ++++++. ++++.|.+++++++||+  +++ ++++|+|+.+|++....          
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~-~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRES-QRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTT-CBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            67899999998643  6778  9999998 99999999999999999  444 89999999999986532          


Q ss_pred             ------------------ccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          268 ------------------RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       268 ------------------~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                        ....++.++|.+++++|++++++.++++.|.+++.+.+||+|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~  147 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN  147 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEEC
Confidence                              1246789998889999999999999999999999999999985

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.68  E-value=4.2e-17  Score=162.40  Aligned_cols=124  Identities=12%  Similarity=0.251  Sum_probs=100.5

Q ss_pred             ccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhc
Q 012416          184 GKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL  263 (464)
Q Consensus       184 ~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl  263 (464)
                      +..|.+.+.+++.+++.+  .+.+|+|+|+|+.++++++.++|+. ++++.|.+++++++||++++.++++|+++.+|++
T Consensus        15 ~~~~~~~~~~~~~~~~~l--~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll   91 (330)
T 2v8q_E           15 EHSQETPESNSSVYTTFM--KSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI   91 (330)
T ss_dssp             --------CCSCHHHHHH--HHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHH
T ss_pred             hHhhhccchhhHHHHHHH--HcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHH
Confidence            445778778888888874  7889999999999999999999998 9999999999999999997667899999999997


Q ss_pred             cccccc------------cc-------ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          264 SVDYRD------------AV-------PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       264 ~~~~~~------------~~-------~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ......            ..       +++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus        92 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~  157 (330)
T 2v8q_E           92 NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP  157 (330)
T ss_dssp             HHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT
T ss_pred             HHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC
Confidence            642110            11       234667889999999999999999999999999999996

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.68  E-value=1.7e-16  Score=141.72  Aligned_cols=103  Identities=20%  Similarity=0.240  Sum_probs=91.4

Q ss_pred             cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcE-eeEEecCCCcEEEEEEcchhccccc-------------
Q 012416          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSR-VPVYSGNPTNIIGLILVKNLLSVDY-------------  267 (464)
Q Consensus       202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr-~PVvd~d~d~iVGIVt~kDLl~~~~-------------  267 (464)
                      .+...+|+++|++  +++++++++|+. ++++.|.++++++ +||+|++  +++|+|+.+|++....             
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            4567889999986  788999999998 9999999999999 9999864  8999999999986421             


Q ss_pred             ------ccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          268 ------RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       268 ------~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                            ....++.++|.+ ++++++++++.++++.|.+++.+.+||+|+
T Consensus        87 ~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  134 (157)
T 1o50_A           87 RSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE  134 (157)
T ss_dssp             --CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC
Confidence                  124678999888 999999999999999999999999999997

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.68  E-value=7.6e-17  Score=139.29  Aligned_cols=103  Identities=15%  Similarity=0.209  Sum_probs=90.2

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhc-ccccc----cccccccccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL-SVDYR----DAVPLRKMII  278 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl-~~~~~----~~~~V~dIM~  278 (464)
                      .-.+|+++|++  ++.++++++|+. ++++.|.+++++++||+|++ ++++|+|+.+|++ .....    ...++.++|.
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   81 (133)
T 1y5h_A            6 TMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELAR   81 (133)
T ss_dssp             --CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHT
T ss_pred             hhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHhc
Confidence            44689999986  678899999998 99999999999999999865 8999999999998 34322    2467999988


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       279 r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++++++.++++.|.+++.+.+||+|+
T Consensus        82 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  113 (133)
T 1y5h_A           82 DSIYYVDANASIQEMLNVMEEHQVRRVPVISE  113 (133)
T ss_dssp             TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            89999999999999999999999999999997

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.67  E-value=1.8e-16  Score=138.14  Aligned_cols=104  Identities=15%  Similarity=0.218  Sum_probs=89.2

Q ss_pred             cccccccc---ccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----cccccc
Q 012416          203 LTEKTAKD---AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLR  274 (464)
Q Consensus       203 l~~itV~d---IMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~  274 (464)
                      +.+.++++   +|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....     ...++.
T Consensus         5 ~~~~~v~~~~~~~~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~   80 (144)
T 2nyc_A            5 FLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG   80 (144)
T ss_dssp             GGGSBGGGSSCCBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHH
T ss_pred             hhhcchhhcCCCCCC--CceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccHH
Confidence            45677888   7864  788899999998 99999999999999999865 899999999999875432     145789


Q ss_pred             ccccc------CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          275 KMIIR------RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       275 dIM~r------~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++|.+      ++.++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  122 (144)
T 2nyc_A           81 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD  122 (144)
T ss_dssp             HHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC
Confidence            98876      6889999999999999999999999999997

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.67  E-value=1.6e-16  Score=142.80  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=91.6

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc------------cccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY------------RDAV  271 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~------------~~~~  271 (464)
                      ...+|+++|++  +++++++++|+. ++++.|.+++++++||+|++ ++++|+|+.+|++....            ....
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            45789999986  678899999998 99999999999999999865 89999999999986532            1246


Q ss_pred             ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++.++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        79 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  117 (160)
T 2o16_A           79 PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK  117 (160)
T ss_dssp             BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET
T ss_pred             CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC
Confidence            899999888999999999999999999999999999987

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.66  E-value=2.1e-16  Score=140.90  Aligned_cols=110  Identities=12%  Similarity=0.160  Sum_probs=91.7

Q ss_pred             HHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEec-CCCcEEEEEEcchhccccccc-------
Q 012416          198 AGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLSVDYRD-------  269 (464)
Q Consensus       198 ~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~-d~d~iVGIVt~kDLl~~~~~~-------  269 (464)
                      .+.+.+.+.+|+++|++  +++++++++|+. ++++.|.+++++++||+|+ +.++++|+|+.+|++......       
T Consensus         5 ~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~   81 (164)
T 2pfi_A            5 GRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG   81 (164)
T ss_dssp             -----CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------C
T ss_pred             cccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCc
Confidence            44566788999999986  678899999998 9999999999999999985 248999999999998654221       


Q ss_pred             -ccccccccccC------CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 -AVPLRKMIIRR------IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 -~~~V~dIM~r~------~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                       ..++.++|.++      +.++++++++.++++.|.+++.+.+||+|+
T Consensus        82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  129 (164)
T 2pfi_A           82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR  129 (164)
T ss_dssp             CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET
T ss_pred             ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC
Confidence             24688887766      788999999999999999999999999996

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.65  E-value=1e-16  Score=158.88  Aligned_cols=126  Identities=13%  Similarity=0.209  Sum_probs=106.7

Q ss_pred             cCCCCChhHHHHHHHhhcc-cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhc
Q 012416          185 KGGDLTHDETTIIAGALEL-TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL  263 (464)
Q Consensus       185 ~~G~L~~~E~~~I~~vl~l-~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl  263 (464)
                      +.|.++++|+++++++++| .+.+|+|+|+|+.++++++.++|+. ++++.|.+++++++||++++.++++|+++.+|++
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~   86 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFI   86 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHH
Confidence            4567889999999999998 9999999999999999999999999 9999999999999999997667999999999987


Q ss_pred             ccccc-----c---------cccccc------ccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 012416          264 SVDYR-----D---------AVPLRK------MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL  311 (464)
Q Consensus       264 ~~~~~-----~---------~~~V~d------IM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDey  311 (464)
                      .....     .         ...+.+      +|.+++.++++++++.++++.|.+++.+.+||+|++
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  154 (323)
T 3t4n_C           87 NVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQD  154 (323)
T ss_dssp             HHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC
T ss_pred             HHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecC
Confidence            64210     0         112333      346788999999999999999999999999999984

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.64  E-value=6.7e-16  Score=151.21  Aligned_cols=130  Identities=15%  Similarity=0.208  Sum_probs=108.4

Q ss_pred             cCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeE
Q 012416          166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV  245 (464)
Q Consensus       166 ~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PV  245 (464)
                      .+|..||...+..    +...       .+...+.+++.+.+|+++|++  +++++++++++. ++++.|.+++++++||
T Consensus        64 ivT~~Di~~~~~~----~~~~-------~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpV  129 (296)
T 3ddj_A           64 LLTTRDLLSTVES----YCKD-------SCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPV  129 (296)
T ss_dssp             EEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEE
T ss_pred             EEeHHHHHHHhcc----cccc-------cccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEEE
Confidence            5688888877641    1100       334556667778999999997  678899999998 9999999999999999


Q ss_pred             EecCCCcEEEEEEcchhccccccc--ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          246 YSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       246 vd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +|++ ++++|+++.+|++......  ..+++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus       130 vd~~-~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~  195 (296)
T 3ddj_A          130 VDIN-DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD  195 (296)
T ss_dssp             ECTT-SCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             EcCC-CcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            9865 8999999999998765432  45899999899999999999999999999999999999997

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.62  E-value=7.7e-16  Score=148.44  Aligned_cols=134  Identities=12%  Similarity=0.213  Sum_probs=105.2

Q ss_pred             cCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeE
Q 012416          166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV  245 (464)
Q Consensus       166 ~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PV  245 (464)
                      .+|..|+...+..    +...+.+...+   ..+++...+.+|+++|++  +++++++++++. ++++.|.+++++++||
T Consensus        51 ivt~~di~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~V  120 (280)
T 3kh5_A           51 IITSMDIVDFMGG----GSKYNLIREKH---ERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPI  120 (280)
T ss_dssp             EEEHHHHHHHTTT----SGGGHHHHTTS---TTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEE
T ss_pred             EEEHHHHHHHhcc----cchhhhhhhcc---ccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEE
Confidence            5688888877641    11111111111   122333447899999996  778899999998 9999999999999999


Q ss_pred             EecCCCcEEEEEEcchhccccccc---ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          246 YSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       246 vd~d~d~iVGIVt~kDLl~~~~~~---~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +|++ |+++|+++.+|+++.....   ..++.++|.+++.++++++++.++++.|.+++.+.+||+++
T Consensus       121 vd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  187 (280)
T 3kh5_A          121 VNDE-NQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSE  187 (280)
T ss_dssp             ECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             EcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence            9875 8999999999998764332   34789998899999999999999999999999999999943

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.61  E-value=5.4e-15  Score=139.74  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=90.6

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEe
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV  284 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V  284 (464)
                      .-+++++|++  +++++++++|+. ++++.|.+++++++||+|++ ++++|+|+.+|++....  ..+++++|.+++.++
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im~~~~~~v   85 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFV   85 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCE
T ss_pred             ccCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHccCCCEEE
Confidence            3468999985  778899999998 99999999999999999865 89999999999987654  358999998899999


Q ss_pred             cCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          285 SEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       285 ~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++.++++.|.+++.+.+||+|+
T Consensus        86 ~~~~~l~~a~~~m~~~~~~~lpVvd~  111 (213)
T 1vr9_A           86 HEEDNITHALLLFLEHQEPYLPVVDE  111 (213)
T ss_dssp             ETTSBHHHHHHHHHHCCCSEEEEECT
T ss_pred             CCCCcHHHHHHHHHHhCCCEEEEEcC
Confidence            99999999999999999999999997

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.60  E-value=4.9e-16  Score=169.90  Aligned_cols=105  Identities=17%  Similarity=0.053  Sum_probs=91.9

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHH-HcCCcEeeEEecCCCcEEEEEEcchhccccccc-------------
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIM-TMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-------------  269 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~-~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-------------  269 (464)
                      .+.+|+|+|+||++++++++++|++ |+.+.|. +++++++||+|++ ++++|+|+.+|+++.....             
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            6789999999999999999999998 9999999 7999999999875 8999999999998753221             


Q ss_pred             --------------------------------------ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 --------------------------------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 --------------------------------------~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                                            ..++.++|.+++.+|++++++.++++.|++++.+.+||+|+
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~  607 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTER  607 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEET
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEEC
Confidence                                                  00277899999999999999999999999999999999943

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.59  E-value=5.5e-15  Score=146.45  Aligned_cols=104  Identities=15%  Similarity=0.230  Sum_probs=92.2

Q ss_pred             ccccccccc---cccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----ccccc
Q 012416          203 LTEKTAKDA---MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLR  274 (464)
Q Consensus       203 l~~itV~dI---MtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~~~V~  274 (464)
                      +.+.+++++   |++  +++++++++++. ++++.|.+++++++||+|++ |+++|+|+.+|++.....+     ..+++
T Consensus       184 ~~~~~v~~~~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~  259 (323)
T 3t4n_C          184 FLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG  259 (323)
T ss_dssp             GCCSBGGGTTCSBCT--TCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETTHHHHHHHTTHHHHTTSBHH
T ss_pred             hhhCcHHHcCCCCCC--CcEEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHHHHHHhhchhhhccCCHH
Confidence            456789999   764  778999999998 99999999999999999875 8999999999998764432     45789


Q ss_pred             ccccc------CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          275 KMIIR------RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       275 dIM~r------~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++|.+      ++.++++++++.++++.|.+++.+.+||+|+
T Consensus       260 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  301 (323)
T 3t4n_C          260 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD  301 (323)
T ss_dssp             HHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECT
T ss_pred             HHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECC
Confidence            99877      7899999999999999999999999999997

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.59  E-value=5e-15  Score=156.95  Aligned_cols=131  Identities=9%  Similarity=0.166  Sum_probs=110.8

Q ss_pred             cCCHHHHHHHHhhcccccccCCCCC-----hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCC
Q 012416          166 LLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH  240 (464)
Q Consensus       166 ~~s~eEL~~lve~~~~e~~~~G~L~-----~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~  240 (464)
                      .++++|+..++...    ...|.+.     +++++++++++.+     +++|++  +++++++++|+. ++++.|.++++
T Consensus        54 ~vt~~eLa~av~~~----Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIARA----GGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHc----CCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            56788999888632    2223444     6778888888754     779996  788899999998 99999999999


Q ss_pred             cEeeEEe--cCCCcEEEEEEcchhccccccccccccccccc-CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          241 SRVPVYS--GNPTNIIGLILVKNLLSVDYRDAVPLRKMIIR-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       241 Sr~PVvd--~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r-~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++||++  ++ ++++|+|+.+|++... ..+.++.++|.+ +++++++++++.++++.|++++.+.+||+|+
T Consensus       122 ~~~pVvd~~~~-~~lvGivt~~Dl~~~~-~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~  192 (491)
T 1zfj_A          122 SGVPIVETLAN-RKLVGIITNRDMRFIS-DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN  192 (491)
T ss_dssp             SEEEEESCTTT-CBEEEEEEHHHHHHCS-CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT
T ss_pred             CEEEEEEeCCC-CEEEEEEEHHHHhhhc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            9999998  54 8999999999998643 235689999887 8999999999999999999999999999998

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.58  E-value=2.7e-15  Score=146.87  Aligned_cols=103  Identities=13%  Similarity=0.218  Sum_probs=92.3

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----------ccccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------DAVPL  273 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----------~~~~V  273 (464)
                      .+.+|+++|++  +++++++++++. ++++.|.+++++++||+|++ |+++|+|+.+|++.....          ...++
T Consensus       154 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v  229 (296)
T 3ddj_A          154 EIFPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVV  229 (296)
T ss_dssp             CCCBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBH
T ss_pred             ccccHHHhhcC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCH
Confidence            45689999985  678899999998 99999999999999999865 899999999999876431          24688


Q ss_pred             ccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          274 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       274 ~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus       230 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~  266 (296)
T 3ddj_A          230 KDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK  266 (296)
T ss_dssp             HHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC
Confidence            9999889999999999999999999999999999997

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.57  E-value=7.3e-15  Score=156.94  Aligned_cols=132  Identities=11%  Similarity=0.175  Sum_probs=107.1

Q ss_pred             ccCCHHHHHHHHhhcccccccCCCCC-----hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC
Q 012416          165 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~~~~G~L~-----~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~  239 (464)
                      ..+|++++...+...+    .-|.|.     +++.++++.++.     .+++|++  +++++++++|+. ++++.|.+++
T Consensus        76 dtvTe~~lAia~a~~G----giGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~  143 (511)
T 3usb_A           76 DTVTEADMAIAMARQG----GLGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYR  143 (511)
T ss_dssp             TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHC
T ss_pred             hhhcHHHHHHHHHhcC----CceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcC
Confidence            4568899877665322    113332     445556777764     5567875  778999999998 9999999999


Q ss_pred             CcEeeEEec--CCCcEEEEEEcchhccccccccccccccccc-CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          240 HSRVPVYSG--NPTNIIGLILVKNLLSVDYRDAVPLRKMIIR-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       240 ~Sr~PVvd~--d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r-~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++||+++  + ++++|+|+.+|++.. .....++.++|.+ +++++++++++.++++.|++++.+.+||+|+
T Consensus       144 ~s~~pVvd~g~~-~~lvGiVt~rDl~~~-~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe  215 (511)
T 3usb_A          144 ISGVPVVNNLDE-RKLVGIITNRDMRFI-QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN  215 (511)
T ss_dssp             CSEEEEESCTTT-CBEEEEEEHHHHTTC-CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT
T ss_pred             CcEEEEEecCCC-CEEEEEEEehHhhhh-ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence            999999986  5 899999999999863 2335789999887 8999999999999999999999999999998

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.57  E-value=1.5e-14  Score=139.39  Aligned_cols=101  Identities=14%  Similarity=0.234  Sum_probs=87.6

Q ss_pred             ccccc-cccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----------------
Q 012416          207 TAKDA-MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----------------  269 (464)
Q Consensus       207 tV~dI-MtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----------------  269 (464)
                      +++++ |++  +++++++++|+. ++++.|.+++++++||++++.|+++|+++.+|++......                
T Consensus         4 ~v~~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 3kh5_A            4 RVMKIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLA   80 (280)
T ss_dssp             BGGGTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred             hHHHHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhH
Confidence            45554 554  789999999998 9999999999999999986448999999999998654211                


Q ss_pred             --ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 --AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 --~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                        ..+++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~  123 (280)
T 3kh5_A           81 AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND  123 (280)
T ss_dssp             HTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT
T ss_pred             HhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC
Confidence              34789999889999999999999999999999999999998

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.56  E-value=8.3e-16  Score=163.67  Aligned_cols=132  Identities=15%  Similarity=0.246  Sum_probs=102.6

Q ss_pred             ccCCHHHHHHHHhhcccccccCCCC-----ChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC
Q 012416          165 VLLRRAELKTFVNFHGNEAGKGGDL-----THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~~~~G~L-----~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~  239 (464)
                      ..+|++++...+...+    .-|.|     .++++++++++     ++++++|++  +++++++++|+. ++++.|.+++
T Consensus        52 dtVTe~~ma~a~a~~G----GiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQEG----GIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHHcC----CcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcC
Confidence            4678999988876421    22344     66778899988     466889984  788999999998 9999999999


Q ss_pred             CcEeeEEecCCCcEEEEEEcchhcccccccccccccccc-c-CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-R-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       240 ~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~-r-~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++||++++ ++++|+|+.+|++... ....++.++|. + +++++++++++.++++.|++++.+.+||+|+
T Consensus       120 ~s~~PVvd~~-~~lvGiVt~rDL~~~~-~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe  190 (496)
T 4fxs_A          120 FAGFPVVTEN-NELVGIITGRDVRFVT-DLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND  190 (496)
T ss_dssp             CCEEEEECSS-SBEEEEEEHHHHTTCC-CTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECT
T ss_pred             CcEEEEEccC-CEEEEEEEHHHHhhcc-cCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999875 8999999999998432 33568999987 4 5899999999999999999999999999999

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.56  E-value=5.6e-15  Score=141.61  Aligned_cols=102  Identities=17%  Similarity=0.243  Sum_probs=89.5

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----------------
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------------  268 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----------------  268 (464)
                      ..+|+|+|++  +++++++++++. ++++.|.+++++++||+|++ |+++|+++.+|+++....                
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence            4689999985  678899999998 99999999999999999875 899999999999754210                


Q ss_pred             --------------------------------------------------------------------------------
Q 012416          269 --------------------------------------------------------------------------------  268 (464)
Q Consensus       269 --------------------------------------------------------------------------------  268 (464)
                                                                                                      
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------cccccccccc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 ---------------------DAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 ---------------------~~~~V~dIM~-r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                           ...+++++|. +++.++++++++.++++.|.+++.+.+||+|+
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~  225 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE  225 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT
T ss_pred             HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC
Confidence                                 0235778888 89999999999999999999999999999998

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.55  E-value=1.2e-14  Score=141.87  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=52.8

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC-CCcEEEEEEcchhcc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLS  264 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d-~d~iVGIVt~kDLl~  264 (464)
                      ..+++|+|+|++  +++++.+++++. ++.+.|.+++++++||++++ .++++|+|+.+||+.
T Consensus        10 ~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~   69 (250)
T 2d4z_A           10 KYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEG   69 (250)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             cCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence            467899999985  789999999998 99999999999999999864 267999999999975

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.53  E-value=1.2e-14  Score=155.52  Aligned_cols=103  Identities=13%  Similarity=0.172  Sum_probs=89.7

Q ss_pred             ccccccccccccCcceEEEcCC-CChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----ccccccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLD-ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMI  277 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d-~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM  277 (464)
                      +.+.+|+++|++  ++++++++ +|+. ++++.|.+++++++||+|++.++++|+|+.+|+++....    ...++.++|
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            567899999985  78889999 9998 999999999999999998333899999999999865422    246899999


Q ss_pred             ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       278 ~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++.+|++++++.++++.|.+++  ++||+|+
T Consensus       458 ~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~  488 (527)
T 3pc3_A          458 NKRVIRLNESEILGKLARVLEVDP--SVLILGK  488 (527)
T ss_dssp             ETTCCEEETTSBHHHHHHHHTTCS--EEEEEEE
T ss_pred             cCCCeEECCCCcHHHHHHHHhhCC--EEEEEeC
Confidence            999999999999999999997765  5799998

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.53  E-value=1.5e-14  Score=139.86  Aligned_cols=99  Identities=22%  Similarity=0.250  Sum_probs=71.4

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEec
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  285 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~  285 (464)
                      ++|+++|++  +++++++++|+. ++++.|.+++++++||++++ |+++|+++.+|++....  ..+++++|.+++++++
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~--~~~v~~~m~~~~~~v~   74 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CchHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc--cCCHHHHcCCCCcEEC
Confidence            368999995  788899999998 99999999999999999864 89999999999987654  3578999888899999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          286 EDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       286 e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++.++++.|.+++.+.+||+|+
T Consensus        75 ~~~~l~~a~~~m~~~~~~~~~Vvd~   99 (282)
T 2yzq_A           75 ENDTLKKAAKLMLEYDYRRVVVVDS   99 (282)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999999999999999999998

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.52  E-value=4.4e-14  Score=136.70  Aligned_cols=103  Identities=14%  Similarity=0.169  Sum_probs=89.8

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhc------cccc----------
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL------SVDY----------  267 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl------~~~~----------  267 (464)
                      .+.+++++|++  +++++++++++. ++.+.|.+++++++||++++ ++++|+++.+|++      +...          
T Consensus       124 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  199 (282)
T 2yzq_A          124 KGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSEE  199 (282)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred             ccCcHHHHhCC--CCEEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHhhhhhhhhhhccchhhhhhhh
Confidence            36789999974  677899999998 99999999999999999865 7999999999998      4331          


Q ss_pred             ------------------ccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          268 ------------------RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       268 ------------------~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                        ....+++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  260 (282)
T 2yzq_A          200 EWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG  260 (282)
T ss_dssp             -------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             hhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECC
Confidence                              0146789999999999999999999999999999999999997

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.48  E-value=4.2e-15  Score=158.50  Aligned_cols=136  Identities=11%  Similarity=0.102  Sum_probs=20.4

Q ss_pred             ccCCHHHHHHHHhhccccc--ccCCCCChhHHHHHHHhhcccccccccc-cccCcceEEEcCCCChHHHHHHHHHHcCCc
Q 012416          165 VLLRRAELKTFVNFHGNEA--GKGGDLTHDETTIIAGALELTEKTAKDA-MTPISKAFSLDLDATLTLDTLNAIMTMGHS  241 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~--~~~G~L~~~E~~~I~~vl~l~~itV~dI-MtPR~dvvtV~~d~tl~eeal~~m~~~~~S  241 (464)
                      ..++++++...+...+..+  ++ +.-.+++++++.++..      .++ |++  +++++++++|+. ++++.|.+++++
T Consensus        60 ~~vt~~~la~~la~~gg~G~I~~-~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~~s  129 (503)
T 1me8_A           60 QSVSGEKMAIALAREGGISFIFG-SQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRTTHN  129 (503)
T ss_dssp             TTTCSHHHHHHHHHTTCEEEECC-SSCHHHHHHHHHHHHT------TTC-------------------------------
T ss_pred             hhhhHHHHHHHHHhCCCcceeeC-CCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHcCce
Confidence            3567889887775321100  01 1112466777766553      455 986  788999999998 999999999999


Q ss_pred             EeeEEecC--CCcEEEEEEcchhcccccccccccccccccC--CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          242 RVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       242 r~PVvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~--~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++||++++  .++++|+|+.+|++........+++++|.++  ++++++++++.++++.|++++.+.+||+|+
T Consensus       130 ~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe  202 (503)
T 1me8_A          130 TVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD  202 (503)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             EEEEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            99999864  3799999999999863222356899998776  999999999999999999999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.48  E-value=1.6e-13  Score=136.58  Aligned_cols=103  Identities=8%  Similarity=0.166  Sum_probs=89.8

Q ss_pred             ccccccc---ccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----ccccccc
Q 012416          204 TEKTAKD---AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRK  275 (464)
Q Consensus       204 ~~itV~d---IMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~d  275 (464)
                      ...++++   +|++  ++.++++++++. ++++.|.+++++++||++++ |+++|+|+.+|++.....     ...++.+
T Consensus       180 ~~~~v~~l~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~~  255 (334)
T 2qrd_G          180 LRVPLNQMTIGTWS--NLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGE  255 (334)
T ss_dssp             CCCBGGGSSCSBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETHHHHHHHTTSCGGGGGSBHHH
T ss_pred             hhCcHHHhCCcccC--CceEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHHHHhhccccccccCcHHH
Confidence            4578899   4874  678899999998 99999999999999999865 899999999999875432     1457889


Q ss_pred             cccc------CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          276 MIIR------RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       276 IM~r------~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +|.+      ++.++++++++.++++.|.+++.+.+||+|+
T Consensus       256 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  296 (334)
T 2qrd_G          256 ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE  296 (334)
T ss_dssp             HHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECT
T ss_pred             HHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECC
Confidence            9874      7899999999999999999999999999997

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.46  E-value=6.1e-15  Score=156.78  Aligned_cols=131  Identities=12%  Similarity=0.221  Sum_probs=23.7

Q ss_pred             ccCCHHHHHHHHhhcccccccCCCCC-----hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC
Q 012416          165 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  239 (464)
Q Consensus       165 ~~~s~eEL~~lve~~~~e~~~~G~L~-----~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~  239 (464)
                      ..+|++++...+...+    .-|.|.     +++++++.++.     +++++|++  +++++++++|+. ++++.|.+++
T Consensus        51 ~tVTe~~lA~ala~~G----GiGvI~~~~~~e~~a~~v~~vk-----~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~  118 (490)
T 4avf_A           51 DTVTEARLAIAMAQEG----GIGIIHKNMGIEQQAAEVRKVK-----KHETAIVR--DPVTVTPSTKII-ELLQMAREYG  118 (490)
T ss_dssp             TTTCSHHHHHHHHHHT----SEEEECCSSCHHHHHHHHHHHH-----HCCC-----------------------------
T ss_pred             hhhCHHHHHHHHHHcC----CCccccCCCCHHHHHHHhhhhc-----ccccCccc--CceEeCCCCcHH-HHHHHHHHhC
Confidence            4578999988776422    123343     56677777774     57889985  788999999998 9999999999


Q ss_pred             CcEeeEEecCCCcEEEEEEcchhcccccccccccccccc-c-CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-R-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       240 ~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~-r-~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++||++ + ++++|+|+.+|+.... ....++.++|. + ++.++++++++.++++.|++++.+.+||+|+
T Consensus       119 ~s~~pVvd-~-g~lvGIVt~rDl~~~~-~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe  188 (490)
T 4avf_A          119 FSGFPVVE-Q-GELVGIVTGRDLRVKP-NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE  188 (490)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CCEEEEEE-C-CEEEEEEEhHHhhhcc-ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            99999998 4 8999999999997432 33568999987 4 6899999999999999999999999999998

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.45  E-value=9.4e-15  Score=155.07  Aligned_cols=128  Identities=13%  Similarity=0.233  Sum_probs=23.1

Q ss_pred             cCCHHHHHHHHhhcccccccCCCCC-----hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCC
Q 012416          166 LLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH  240 (464)
Q Consensus       166 ~~s~eEL~~lve~~~~e~~~~G~L~-----~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~  240 (464)
                      ..++.|+...+...    ...|.+.     +++++++++++++.     ++|++  +++++++++++. ++++.|.++++
T Consensus        57 ~vt~~ela~ava~~----GglG~i~~~~~~e~~~~~I~~v~~~~-----~~m~~--~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMARE----GGLGVIHRNMGIEEQVEQVKRVKRAE-----RLIVE--DVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHhc----CCceeecCCCCHHHHHHHHHhhcchh-----hcccc--CceEECCCCCHH-HHHHHHHHcCC
Confidence            56788888777532    1223343     57789999998764     46874  889999999998 99999999999


Q ss_pred             cEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          241 SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       241 Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++||+++  ++++|+|+.+|++.   ....++.++|.+++.++++++++.++++.|++++.+.+||+|+
T Consensus       125 ~~~pVvd~--~~lvGivt~~Dl~~---~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde  189 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITKKDIAA---REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDE  189 (486)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cEEEEEEC--CEEEEEEEHHHhcc---CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec
Confidence            99999986  89999999999986   3356899998888999999999999999999999999999998

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.44  E-value=5.5e-13  Score=132.56  Aligned_cols=103  Identities=14%  Similarity=0.189  Sum_probs=88.0

Q ss_pred             ccccccc--cccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----cccccccc
Q 012416          205 EKTAKDA--MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMI  277 (464)
Q Consensus       205 ~itV~dI--MtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~~~V~dIM  277 (464)
                      ..+++++  |+ ..+++++++++++. ++++.|.+++++++||++++ |+++|+|+.+|++......     ..++.++|
T Consensus       189 ~~~v~~~~v~~-~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~  265 (330)
T 2v8q_E          189 SKSLEELQIGT-YANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL  265 (330)
T ss_dssp             GSBHHHHTCSB-CSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             cCCHHHhcccC-cCCceEECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEHHHHHHHHhccccccccCcHHHHH
Confidence            3456666  54 24678899999998 99999999999999999865 8999999999999765432     35788887


Q ss_pred             ------ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          278 ------IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       278 ------~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                            .+++.++++++++.++++.|.+++.+.+||+|+
T Consensus       266 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~  304 (330)
T 2v8q_E          266 QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE  304 (330)
T ss_dssp             GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC
Confidence                  478999999999999999999999999999998

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.29  E-value=4.3e-13  Score=142.33  Aligned_cols=108  Identities=7%  Similarity=0.169  Sum_probs=5.8

Q ss_pred             HHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccc
Q 012416          193 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVP  272 (464)
Q Consensus       193 E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~  272 (464)
                      .++.+..++     +++++|++  +++++++++|+. ++++.|.+++++.+||+|++ ++++|+|+.+|++... ....+
T Consensus        87 ~~~~v~~v~-----~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~~-~~~~~  156 (494)
T 1vrd_A           87 QARQVSIVK-----KTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFEK-NLSKK  156 (494)
T ss_dssp             HHHHHHHHH-----TC----------------------------------------------------------------
T ss_pred             HHHHHHhhh-----hHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhhc-CCCCc
Confidence            345565554     46789986  788999999998 99999999999999999865 7999999999998642 23468


Q ss_pred             ccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          273 LRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       273 V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.++|.+  ++.++++++++.++++.|.+++.+.+||+|+
T Consensus       157 v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~  196 (494)
T 1vrd_A          157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK  196 (494)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC
Confidence            9999887  8999999999999999999999999999998

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.15  E-value=5.9e-12  Score=133.30  Aligned_cols=110  Identities=12%  Similarity=0.257  Sum_probs=9.8

Q ss_pred             hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC--CCcEEEEEEcchhcccccc
Q 012416          191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       191 ~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~~  268 (464)
                      +++.++++.+-.+..     .|+  ++.+++.++.|+. ++++++.+++++.+||+++.  .++++|||+.+|+...  +
T Consensus       128 e~Qa~~V~~VKr~e~-----g~i--~dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d  197 (556)
T 4af0_A          128 EEQAAMVRRVKKYEN-----GFI--TDPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D  197 (556)
T ss_dssp             HHHHHHHHHHHHCCC-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccc-----Ccc--CCCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c
Confidence            445677887776654     454  3678999999999 99999999999999999752  3789999999998764  3


Q ss_pred             cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 ~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ...+++++|+++++++++..+++++.+.|++++...+||||+
T Consensus       198 ~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~  239 (556)
T 4af0_A          198 AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS  239 (556)
T ss_dssp             ------------------------------------------
T ss_pred             cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEcc
Confidence            356899999999999999999999999999999999999998

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.12  E-value=2e-12  Score=138.02  Aligned_cols=101  Identities=14%  Similarity=0.237  Sum_probs=59.0

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC--CCcEEEEEEcchhccccc-cccccccccccc--CC
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDY-RDAVPLRKMIIR--RI  281 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~-~~~~~V~dIM~r--~~  281 (464)
                      +++++|++  +++++++++|+. ++++.|.+++++++||+|++  .++++|+|+.+|+..... ....++.++|.+  ++
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~  185 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIEL  185 (514)
T ss_dssp             TCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC----------------CCBCC
T ss_pred             hhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCCC
Confidence            68899985  677899999998 99999999999999999862  379999999999986431 234689999887  89


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++++.++++.|.+++.+.+||||+
T Consensus       186 ~tv~~~~~l~ea~~~m~~~~~~~lpVVd~  214 (514)
T 1jcn_A          186 VVAPAGVTLKEANEILQRSKKGKLPIVND  214 (514)
T ss_dssp             CCEETTCCSTTTTTHHHHHTCSCCCEESS
T ss_pred             eEECCCCCHHHHHHHHHHcCCCcccEECC
Confidence            99999999999999999999999999998

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.77  E-value=9.9e-09  Score=80.61  Aligned_cols=65  Identities=14%  Similarity=0.285  Sum_probs=54.9

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-c----cccccccccccCCcEe
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R----DAVPLRKMIIRRIPRV  284 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-~----~~~~V~dIM~r~~~~V  284 (464)
                      +++++++++|+. ++++.|.+++++.+||+++  |+++|+++.+|+++... .    .+.+++++|.+++.+|
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            367899999999 9999999999999999974  79999999999975422 1    2468999999988764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.55  E-value=4e-08  Score=92.42  Aligned_cols=103  Identities=12%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCc-E
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP-R  283 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~-~  283 (464)
                      +.+|+++|++  +++++++++++. ++++.|.+++++++||+|++ |+++|+|+.+|++...... ....+.+.+-.+ .
T Consensus        71 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~-~~~~~~~~~l~~~~  145 (213)
T 1vr9_A           71 DSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEA-LAMDVPGIRFSVLL  145 (213)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHS-CC------------
T ss_pred             CCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHH-hcCCCCcEEEEEEe
Confidence            3469999996  678899999998 99999999999999999875 8999999999998765332 122333222111 1


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 012416          284 VSEDMPLYDILNEFQKGHSHIAVVYKDLN  312 (464)
Q Consensus       284 V~e~~~l~eaL~~m~~~~~~~a~VVDeyG  312 (464)
                      .....++.++.+.|.+++.+.++|++.+|
T Consensus       146 ~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          146 EDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             -----------------------------
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence            23344699999999999999999987644

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.28  E-value=4.4e-07  Score=86.41  Aligned_cols=60  Identities=20%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      ...+|+++|+| ++++++++++++. ++++.|.+++++++||+|++ |+++|+|+.+|+++..
T Consensus       183 ~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          183 QSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLISTH  242 (245)
T ss_dssp             GGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEECC------
T ss_pred             cCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhchh
Confidence            46789999997 6889999999998 99999999999999999876 8999999999998754

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.26  E-value=7.3e-07  Score=80.14  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=39.2

Q ss_pred             ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.+++++|.+++.+|++++++.+|++.|.+++.+.+||+|+
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~   57 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ   57 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC
Confidence            46899999999999999999999999999999999999998

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.13  E-value=2.1e-06  Score=75.60  Aligned_cols=61  Identities=16%  Similarity=0.268  Sum_probs=54.3

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||+| + |+++|+|+.+|++.....
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHT
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence            357889999986  678899999998 999999999999999998 4 899999999999987543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.10  E-value=3.1e-06  Score=75.05  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCC---cEEEEEEcchhccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT---NIIGLILVKNLLSVDY  267 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d---~iVGIVt~kDLl~~~~  267 (464)
                      ..+.+|+++|+++.+++++++++++. ++++.|.+++++++||++++ |   +++|+|+.+|++....
T Consensus        78 ~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           78 LTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             TTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHHHHH
T ss_pred             ccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHHHHH
Confidence            46789999999766788999999998 99999999999999999875 6   8999999999987643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.08  E-value=3.8e-06  Score=70.40  Aligned_cols=60  Identities=17%  Similarity=0.249  Sum_probs=52.7

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      ...+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|++....
T Consensus        60 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           60 NKKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             TCCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHC
T ss_pred             cccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHHHhh
Confidence            34489999986  667889999998 99999999999999999875 89999999999987643

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.08  E-value=7.1e-06  Score=64.13  Aligned_cols=30  Identities=13%  Similarity=0.092  Sum_probs=28.4

Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       281 ~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++|++++++.+|++.|.+++.+.+||+|+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~   31 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG   31 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence            568999999999999999999999999986

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.04  E-value=9.2e-06  Score=70.84  Aligned_cols=41  Identities=12%  Similarity=0.127  Sum_probs=38.3

Q ss_pred             cccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..+++++|.+  ++.++++++++.++++.|.+++.+.+||+|+
T Consensus        22 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~   64 (148)
T 3lv9_A           22 EKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK   64 (148)
T ss_dssp             TCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS
T ss_pred             CCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC
Confidence            4679999987  8999999999999999999999999999987

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.02  E-value=6e-06  Score=70.66  Aligned_cols=60  Identities=25%  Similarity=0.419  Sum_probs=53.6

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++.+++||++ + |+++|+|+.+|++....
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHHH
Confidence            457889999986  678899999998 999999999999999998 5 89999999999987643

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.01  E-value=4.2e-06  Score=72.31  Aligned_cols=59  Identities=15%  Similarity=0.160  Sum_probs=52.3

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      .+.+++++|+|   +.++++++++. ++++.|.+++...+||+|++ |+++|+|+.+|++....
T Consensus        68 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           68 DSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTTC-
T ss_pred             CCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHHh
Confidence            56789999975   67899999998 99999999999999999865 89999999999997654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.00  E-value=1.1e-05  Score=70.56  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             ccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++++|.+  +++++++++++.++++.|.+++.+.+||+|+
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~   69 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD   69 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC
Confidence            478999888  8999999999999999999999999999997

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=97.98  E-value=1.3e-05  Score=72.22  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=52.5

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      .+.+++++| +  ++.++++++++. ++++.|.+++..++||+|++ |+++|+|+.+|++....
T Consensus       105 ~~~~v~~im-~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dil~~l~  163 (172)
T 3lhh_A          105 ERLELVDLV-K--NCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDEY-GDLKGLVTLQDMMDALT  163 (172)
T ss_dssp             CCCCGGGGC-B--CCEEEETTCCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             CcccHHHHh-c--CCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEeeHHHHHHHHh
Confidence            467899999 3  678899999998 99999999999999999875 89999999999997653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=97.97  E-value=1.1e-05  Score=73.18  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=54.8

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      ..+.+++++|.+  +++++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|++.....
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSCH
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHHh
Confidence            456789999986  678899999998 99999999999999999875 899999999999976543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.97  E-value=7.3e-06  Score=68.79  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=53.5

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      +.+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  |+++|+|+.+|++....
T Consensus        62 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           62 LAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKM  121 (125)
T ss_dssp             TTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC
T ss_pred             ccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            457889999986  677899999998 9999999999999999986  89999999999987643

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=97.96  E-value=1.3e-05  Score=68.58  Aligned_cols=40  Identities=13%  Similarity=0.185  Sum_probs=37.7

Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   46 (138)
T 2yzi_A            7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND   46 (138)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            5789999899999999999999999999999999999996

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.96  E-value=4.1e-06  Score=72.52  Aligned_cols=61  Identities=21%  Similarity=0.394  Sum_probs=53.1

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      ..+.+++++|++  +++++++++++. ++++.|.+++++++||++++ |+++|+|+.+|+++...
T Consensus        82 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           82 TNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             --CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             hccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHHHHH
Confidence            356789999997  567889999998 99999999999999999865 89999999999997654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.96  E-value=1.5e-05  Score=68.80  Aligned_cols=40  Identities=15%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   44 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR   44 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            4688999888999999999999999999999999999997

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.95  E-value=1.4e-05  Score=70.97  Aligned_cols=40  Identities=10%  Similarity=0.090  Sum_probs=37.6

Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus         5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~   44 (160)
T 2o16_A            5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA   44 (160)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            4788999888999999999999999999999999999997

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=97.94  E-value=1.2e-05  Score=68.35  Aligned_cols=41  Identities=12%  Similarity=0.058  Sum_probs=38.7

Q ss_pred             ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.+++++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   44 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG   44 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC
Confidence            46789999999999999999999999999999999999997

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.93  E-value=1.1e-05  Score=70.90  Aligned_cols=59  Identities=12%  Similarity=0.128  Sum_probs=52.7

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      .+.+++++| +  ++.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++....
T Consensus        84 ~~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~~l~  142 (153)
T 3oco_A           84 DKAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYEELF  142 (153)
T ss_dssp             TTSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHHHHH
T ss_pred             CCCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHHHHh
Confidence            367899999 3  678999999998 99999999999999999875 89999999999997654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.92  E-value=1.7e-05  Score=67.82  Aligned_cols=40  Identities=8%  Similarity=0.163  Sum_probs=37.5

Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   47 (138)
T 2p9m_A            8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD   47 (138)
T ss_dssp             CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT
T ss_pred             CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC
Confidence            5788998889999999999999999999999999999997

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.91  E-value=7.8e-06  Score=72.13  Aligned_cols=60  Identities=20%  Similarity=0.330  Sum_probs=53.3

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      ..+.+++++|++   ++++++++++. ++++.|.+++++++||+|++ |+++|+|+.+|++....
T Consensus        93 ~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           93 LIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILLALW  152 (157)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             HcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHHHHH
Confidence            467889999986   67899999998 99999999999999999865 89999999999987653

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.91  E-value=1.3e-05  Score=71.31  Aligned_cols=62  Identities=15%  Similarity=0.216  Sum_probs=54.7

Q ss_pred             cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      ...+.+|+++|++  +++++++++++. ++++.|.+++++++||+++  |+++|+|+.+|++.....
T Consensus        89 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           89 ASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             GGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTC
T ss_pred             ccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            3457899999985  678899999998 9999999999999999986  899999999999977543

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.90  E-value=2.6e-05  Score=66.26  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=37.3

Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus         4 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   43 (133)
T 2ef7_A            4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG   43 (133)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEEC
Confidence            4789998888999999999999999999999999999995

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.90  E-value=1.1e-05  Score=68.96  Aligned_cols=58  Identities=16%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      .+.+++++|+|   +.++++++++. ++++.|.+++..++||+|++ |+++|+|+.+|++...
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~-g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDEH-GGISGLVTMEDVLEQI  124 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            46789999964   67899999998 99999999999999999875 8999999999998764

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.89  E-value=8.7e-06  Score=72.75  Aligned_cols=62  Identities=21%  Similarity=0.374  Sum_probs=54.6

Q ss_pred             cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      ...+.+|+++|++  +++++++++++. ++++.|.+++++++||++++ |+++|+|+.+|+++...
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHH
Confidence            3457889999986  567899999998 99999999999999999865 89999999999987653

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.87  E-value=1.5e-05  Score=68.02  Aligned_cols=58  Identities=16%  Similarity=0.225  Sum_probs=51.3

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      .+.+++++|+|   +.++++++++. ++++.|.+++..++||+|++ |+++|+|+.+|+++..
T Consensus        70 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           70 GQKQLGAVMRP---IQVVLNNTALP-KVFDQMMTHRLQLALVVDEY-GTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             TTSBHHHHSEE---CCEEETTSCHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             CcCCHHHHhcC---CcCcCCCCcHH-HHHHHHHHcCCeEEEEEcCC-CCEEEEEEHHHHHHHH
Confidence            36789999963   57899999998 99999999999999999875 8999999999998754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.87  E-value=1.1e-05  Score=68.64  Aligned_cols=58  Identities=10%  Similarity=0.132  Sum_probs=51.3

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      .+.+++++|+|   +.++++++++. ++++.|.+++..++||+|++ |+++|+|+.+|+++..
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECTT-SCEEEEEEHHHHHHHC
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            46789999964   46799999998 99999999999999999865 8999999999998754

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.86  E-value=9.9e-06  Score=68.97  Aligned_cols=59  Identities=20%  Similarity=0.314  Sum_probs=52.7

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      .+.+++++|++  ++.++++++++. ++++.|.+++.+++||+++  |+++|+|+.+|+++...
T Consensus        72 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           72 NTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             TTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC
T ss_pred             cccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            46789999986  677899999998 9999999999999999986  79999999999987643

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=97.85  E-value=1.5e-05  Score=69.31  Aligned_cols=41  Identities=15%  Similarity=0.149  Sum_probs=37.3

Q ss_pred             ccccccccc--cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~--r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..+++++|.  ++++++++++++.++++.|.+++.+.+||+|+
T Consensus        14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~   56 (150)
T 3lqn_A           14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP   56 (150)
T ss_dssp             HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence            357899987  45899999999999999999999999999997

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.85  E-value=2.6e-05  Score=75.66  Aligned_cols=41  Identities=7%  Similarity=0.235  Sum_probs=38.8

Q ss_pred             ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ...++++|.+++.+|++++++.++.+.|.+++.+.+||||+
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~   52 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT   52 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec
Confidence            46799999999999999999999999999999999999997

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.84  E-value=1.3e-05  Score=68.66  Aligned_cols=57  Identities=16%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      ..+++++|.   ++.++++++++. ++++.|.+++.+.+||+|++ |+++|+|+.+|++...
T Consensus        69 ~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           69 KEIMLRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEI  125 (130)
T ss_dssp             HHHHHHHSB---CCCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             hhhHHHhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHHHH
Confidence            457899994   467899999998 99999999999999999865 8999999999998764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=97.84  E-value=2.5e-05  Score=69.74  Aligned_cols=39  Identities=5%  Similarity=-0.039  Sum_probs=35.3

Q ss_pred             ccccccc--cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~--r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++++|+  .++.+|++++++.+|++.|.+++...+||+|+
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~   56 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD   56 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC
Confidence            5678875  46889999999999999999999999999997

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.80  E-value=2.5e-05  Score=68.84  Aligned_cols=40  Identities=15%  Similarity=0.141  Sum_probs=37.3

Q ss_pred             ccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++++|.+  +++++++++++.++++.|.+++.+.+||+|+
T Consensus        14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~   55 (159)
T 1yav_A           14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP   55 (159)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT
T ss_pred             hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC
Confidence            578899877  7999999999999999999999999999997

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.80  E-value=2.7e-05  Score=68.11  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=37.5

Q ss_pred             cccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||+|+
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~   52 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT   52 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC
Confidence            3578899876  8899999999999999999999999999997

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=97.79  E-value=1.8e-05  Score=69.94  Aligned_cols=55  Identities=16%  Similarity=0.197  Sum_probs=49.8

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL  263 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl  263 (464)
                      .+.+++++|+|   +.++++++++. ++++.|.+++...+||+|++ |+++|+|+.+|++
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhc
Confidence            46789999975   67899999998 99999999999999999875 8999999999986

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.79  E-value=4.4e-05  Score=65.41  Aligned_cols=40  Identities=10%  Similarity=0.350  Sum_probs=36.0

Q ss_pred             ccccc---ccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRK---MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~d---IM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++++   +|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus         8 ~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   50 (144)
T 2nyc_A            8 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE   50 (144)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             cchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC
Confidence            35666   77788999999999999999999999999999997

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.79  E-value=1.1e-05  Score=85.85  Aligned_cols=100  Identities=15%  Similarity=0.201  Sum_probs=20.4

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccccccccccc--CC
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RI  281 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r--~~  281 (464)
                      .+.+|+++|+|..+++++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|+++...... ...+.+.+  ..
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~-~~~d~~~~l~v~  235 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHN-ELVDSQKRYLVG  235 (503)
T ss_dssp             -----------------------------------------------------------------CC-CCBCTTSCBCCE
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhccc-chhccccccccc
Confidence            4578999999866689999999998 99999999999999999876 89999999999998654321 12222111  11


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEE
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVV  307 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~V  307 (464)
                      ..++. .+..+.++.|.+.+.+.++|
T Consensus       236 a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          236 AGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             EEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             cccCc-hhHHHHHHHHHhhhccceEE
Confidence            23555 66777789999999887555

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.78  E-value=1.5e-05  Score=74.66  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=54.8

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      ..+.+++++|++  +++++++++++. ++++.|.+++...+||+|++ |+++|+|+.+|++....+
T Consensus       113 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          113 EPHEPLISLLSE--DSRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALVRE  174 (205)
T ss_dssp             CTTSBGGGGCCS--SCCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHHHH
T ss_pred             CCcchHHHHhcC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHH
Confidence            356789999985  678899999998 99999999999999999875 899999999999977543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.72  E-value=6.5e-05  Score=80.06  Aligned_cols=106  Identities=15%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP  282 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~  282 (464)
                      -.+.+++++|++ .++++++++.++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..... ....+.+.+..+
T Consensus       172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p-~a~~D~~~rl~V  247 (511)
T 3usb_A          172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFP-NSAKDKQGRLLV  247 (511)
T ss_dssp             CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCT-TCCBCTTSCBCC
T ss_pred             cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhcc-cchhhhccceee
Confidence            356789999996 5778999999998 99999999999999999876 8999999999999765432 233343333332


Q ss_pred             --EecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 012416          283 --RVSEDMPLYDILNEFQKGHSHIAVVYKDLN  312 (464)
Q Consensus       283 --~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG  312 (464)
                        .+.......+.++.+.+.+.+.+.|....|
T Consensus       248 ~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          248 GAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             eeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence              354455667778888999999887765543

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.69  E-value=5.7e-05  Score=66.28  Aligned_cols=41  Identities=12%  Similarity=0.226  Sum_probs=38.1

Q ss_pred             ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~   52 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES   52 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec
Confidence            45789999889999999999999999999999999999985

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.68  E-value=6.9e-05  Score=67.95  Aligned_cols=41  Identities=12%  Similarity=0.152  Sum_probs=37.2

Q ss_pred             ccccccccc--cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~--r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..+++++|.  ++++++++++++.++++.|.+++...+||+|+
T Consensus        35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~   77 (173)
T 3ocm_A           35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG   77 (173)
T ss_dssp             TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS
T ss_pred             CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC
Confidence            468999986  46889999999999999999999999999987

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.60  E-value=7.1e-05  Score=67.15  Aligned_cols=41  Identities=12%  Similarity=0.101  Sum_probs=36.3

Q ss_pred             ccccccccccC----CcEe--cCCCCHHHHHHHHHhCCCcEEEEE--ec
Q 012416          270 AVPLRKMIIRR----IPRV--SEDMPLYDILNEFQKGHSHIAVVY--KD  310 (464)
Q Consensus       270 ~~~V~dIM~r~----~~~V--~e~~~l~eaL~~m~~~~~~~a~VV--De  310 (464)
                      ..+++++|.+.    ++++  ++++++.++++.|.+++.+.+||+  |+
T Consensus        10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~   58 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE   58 (185)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT
T ss_pred             cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC
Confidence            35789998776    7788  999999999999999999999999  55

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.54  E-value=5.3e-05  Score=73.77  Aligned_cols=62  Identities=16%  Similarity=0.295  Sum_probs=53.9

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      ..+.+++++|++  +++++++++++. ++++.|.+++...+||+|++ |+++|+|+.+|++.....
T Consensus       196 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          196 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             CTTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC--
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHHH
Confidence            357889999975  678899999998 99999999999999999875 899999999999976543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.43  E-value=0.00014  Score=77.43  Aligned_cols=40  Identities=8%  Similarity=0.130  Sum_probs=37.8

Q ss_pred             ccccccccccCCcEecCC-CCHHHHHHHHHhCCCcEEEEEe
Q 012416          270 AVPLRKMIIRRIPRVSED-MPLYDILNEFQKGHSHIAVVYK  309 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~-~~l~eaL~~m~~~~~~~a~VVD  309 (464)
                      ..+++++|.+++.+++++ +++.++++.|.+++.+.+||+|
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd  423 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD  423 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEE
Confidence            367999999999999999 9999999999999999999999

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.41  E-value=8.3e-05  Score=72.98  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++.+.+||+|++ |+++|+|+.+|++....
T Consensus       198 ~~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          198 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             CCCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            357789999985  678899999998 99999999999999999865 89999999999997654

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.35  E-value=0.00017  Score=78.77  Aligned_cols=57  Identities=5%  Similarity=-0.028  Sum_probs=49.4

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      +++++|++  +++++++++++. ++.+.|.+++.+++||+ ++ |+++|+|+.+|+++...+
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~-ea~~~M~~~~i~~lpVv-e~-G~lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVR-QLHFLFVMLMPSMIYVT-ER-GKLVGIVEREDVAYGYSN  625 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHH-HHHHHHHHTCCSEEEEE-ET-TEEEEEEEGGGTEECCCC
T ss_pred             ccchhhcC--CCceecCCCcHH-HHHHHHHhcCCCEEEEE-EC-CEEEEEEehhhHHHHHhh
Confidence            48999986  677899999998 99999999999999999 44 899999999999987543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.32  E-value=0.00013  Score=77.37  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=16.9

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccccccccc--ccCC
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMI--IRRI  281 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM--~r~~  281 (464)
                      .+.+|+++|+|+.++++++++.++. ++++.|.+++...+||+|++ ++++|+|+.+|+++...... ...+--  .+-.
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~p~-a~kd~~grl~v~  221 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDEN-FYLRGLVTFRDIEKAKTYPL-ASKDEQGRLRVG  221 (490)
T ss_dssp             ----------------------------------------------------------------CTT-CCBCTTSCBCCE
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHhhhhccCcc-hhhhccCcceee
Confidence            4578999999766789999999998 99999999999999999876 89999999999998643211 111110  0111


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEE
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVV  307 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~V  307 (464)
                      ..+.....-.+.++.+.+.+.+.+.+
T Consensus       222 aavG~~~~~~~~a~~l~~aG~d~I~i  247 (490)
T 4avf_A          222 AAVGTGADTGERVAALVAAGVDVVVV  247 (490)
T ss_dssp             EEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             eeeccccchHHHHHHHhhcccceEEe
Confidence            22444445566667777777775544

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.18  E-value=0.00024  Score=74.83  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=54.6

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      -.+.+++++|++  +++++++++++. ++.+.|.+++...+||+|++ |+++|+|+.+|++....
T Consensus       216 ~~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          216 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             CTTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHHH
Confidence            367899999985  678899999998 99999999999999999876 89999999999987654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.17  E-value=0.00015  Score=76.92  Aligned_cols=61  Identities=16%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      .+.+++++|+|+.++++++++.++. ++++.|.+++...+||+|++ |+++|+|+.+|+++..
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKARVEKILVVNDE-FQLKGMITAKDFHKAE  207 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---CCCEEEECTT-SBCCEEECCC-----C
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEeehHhHHHHhh
Confidence            4678999999766688999999998 99999999999999999976 8999999999999764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.15  E-value=0.00024  Score=75.10  Aligned_cols=101  Identities=22%  Similarity=0.281  Sum_probs=23.9

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCc-
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP-  282 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~-  282 (464)
                      .+.+++++|+++.+++++++++++. ++++.|.+++..++||+|++ ++++|+|+.+|+++..... ...++...+-.. 
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~~~~-~~~~D~~~~l~vg  229 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKD-NKLVGLITIKDIMSVIEHP-NAARDEKGRLLVG  229 (494)
T ss_dssp             ----------------------------------------------------------CHHHHTCT-TCCBCTTSCBCCE
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHhhhccc-cccccchhhhccc
Confidence            3568999999766788999999998 99999999999999999876 8999999999999765322 112221000001 


Q ss_pred             -EecCCCCHHHHHHHHHhCCCcEEEE
Q 012416          283 -RVSEDMPLYDILNEFQKGHSHIAVV  307 (464)
Q Consensus       283 -~V~e~~~l~eaL~~m~~~~~~~a~V  307 (464)
                       -+....+..+.+..+.+.+.+.+.+
T Consensus       230 a~ig~~~~~~~~a~~l~~aGvd~v~i  255 (494)
T 1vrd_A          230 AAVGTSPETMERVEKLVKAGVDVIVI  255 (494)
T ss_dssp             EEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             cccCcCHhHHHHHHHHHHhCCCEEEE
Confidence             2344456677888888888887665

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.93  E-value=0.00048  Score=73.17  Aligned_cols=100  Identities=11%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCC--
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI--  281 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~--  281 (464)
                      .+.+++++|+++.+++++++++++. ++++.|.+++..++||+|++ ++++|+|+.+|+++..... ....+ +....  
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~~~~-~~~~~-~~~rl~v  246 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLK-EANEILQRSKKGKLPIVNDC-DELVAIIARTDLKKNRDYP-LASKD-SQKQLLC  246 (514)
T ss_dssp             ----------CCBCCCCEETTCCST-TTTTHHHHHTCSCCCEESSS-SCCC----CCCCSSCCCCT-TCCBC-TTSCBCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCCcccEECCC-CeEEEEEEHHHHHHHhhCc-chhcc-cCCceee
Confidence            4578999999755788999999998 99999999999999999876 8999999999999765432 11112 11111  


Q ss_pred             -cEecCCCCHHHHHHHHHhCCCcEEEE
Q 012416          282 -PRVSEDMPLYDILNEFQKGHSHIAVV  307 (464)
Q Consensus       282 -~~V~e~~~l~eaL~~m~~~~~~~a~V  307 (464)
                       ..+.......+.++.+.+.+.+.+.+
T Consensus       247 ga~vG~~~~~~~~a~~~~~aG~d~v~i  273 (514)
T 1jcn_A          247 GAAVGTREDDKYRLDLLTQAGVDVIVL  273 (514)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             eeEecCchhhHHHHHHHHHcCCCEEEe
Confidence             12333444666777777788775544

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.76  E-value=0.0039  Score=65.60  Aligned_cols=100  Identities=12%  Similarity=0.150  Sum_probs=71.2

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccC--C
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--I  281 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~--~  281 (464)
                      .+.+++++|++ .+++++++++++. ++++.|.+++..++||+|++ ++++|+++.+|+++...... ...+...+-  .
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~~~~~~~-~~~d~~~~~~vg  225 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVIEFPH-AAKDEFGRLLVA  225 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHHHCTT-CCBCTTSCBCCE
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHHHHhccc-cccCcCCcEEEE
Confidence            56789999985 2567889999998 99999999999999999876 89999999999997654311 111110000  1


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEE
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVV  307 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~V  307 (464)
                      ..++......+.++.+.+.+.+.+.+
T Consensus       226 ~~i~~~~~~~~~a~~l~~~G~d~ivi  251 (491)
T 1zfj_A          226 AAVGVTSDTFERAEALFEAGADAIVI  251 (491)
T ss_dssp             EEECSSTTHHHHHHHHHHHTCSEEEE
T ss_pred             EeccCchhHHHHHHHHHHcCCCeEEE
Confidence            12444444556667777778877654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.73  E-value=0.00061  Score=72.48  Aligned_cols=59  Identities=19%  Similarity=0.298  Sum_probs=0.0

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      .+.+|+++||+  ++++++.+.+++ ++.+.|.+++...+||+|++ ++++|+|+.+|+.+..
T Consensus       198 ~~~~V~evMT~--~lvt~~~~~~le-eA~~iL~~~kieklpVVd~~-g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          198 AETPIKSVMTT--EVVTGSSPITLE-KANSLLRETKKGKLPIVDSN-GHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cceEhhhhccc--ceEEecCCCCHH-HHHHHHHHccccceeEEccC-CcEEEEEEechhhhhh
Confidence            35789999996  799999999998 99999999999999999976 8999999999998753

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.73  E-value=0.00099  Score=70.32  Aligned_cols=99  Identities=18%  Similarity=0.254  Sum_probs=18.2

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCC--
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI--  281 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~--  281 (464)
                      .+.+++++|++  +++++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|+++...... ...+.+.+-.  
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~~~~~-~~~~~~g~~~v~  222 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARKKYKN-AVRDENGELLVA  222 (486)
T ss_dssp             ---------------------------------------------------------------CCTT-CCBCTTSCBCCE
T ss_pred             CCCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhhhccc-cccccCCceeec
Confidence            45689999985  678899999998 99999999999999999875 89999999999998754221 1111111100  


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..++. .+ .+.+..+.+.+.+.+ |+|.
T Consensus       223 ~~~~~-~~-~~~a~~l~~~gvd~l-vvdt  248 (486)
T 2cu0_A          223 AAVSP-FD-IKRAIELDKAGVDVI-VVDT  248 (486)
T ss_dssp             EEECT-TC-HHHHHHHHHTTCSEE-EEEC
T ss_pred             ceech-hh-HHHHHHHHHhcCCce-EEEe
Confidence            12333 33 566778888888875 5553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	464
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-07
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	5e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	5e-05
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.002
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	0.004

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 14/134 (10%), Positives = 40/134 (29%), Gaps = 20/134 (14%)

Query: 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL 262
           +      D +   SK    D    +      A++T G    P++     + +G++ + + 
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 263 LSV-------------------DYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSH 303
           +++                            +   + +  +S +  L+D ++   +   H
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH 128

Query: 304 IAVVYKDLNEKKEG 317
              V    +     
Sbjct: 129 RLPVIDPESGNTLY 142

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 14/152 (9%)

Query: 272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP 331
           P++  +  ++  + +++ L   +    +      +   D + K  G +   N  K   + 
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLR-RGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA 61

Query: 332 EKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFP 391
                            +   L + D   +     A     +        IL+ +N    
Sbjct: 62  VDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGS---LLILNKDNTI-- 116

Query: 392 DFPSNDEAVGVITMEDVIEELLQEEILDETDE 423
                    G+IT  D++  L    ++++  E
Sbjct: 117 --------RGIITERDLLIALHHILVMEKFKE 140

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 16/156 (10%), Positives = 40/156 (25%), Gaps = 25/156 (16%)

Query: 188 DLTHDETTIIAGALE-LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY 246
           D+   +   +      +  +T+ D +    +    D+   +   +L+ +        P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLW 59

Query: 247 SGNPTNIIGLILVKNLLSV-----------------------DYRDAVPLRKMIIRRIPR 283
                   GL+ + + ++V                         R+       I      
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119

Query: 284 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGEL 319
           V     L D      K  +    +     E     +
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMI 155

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 11/157 (7%)

Query: 267 YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326
           Y+  V +     R +  V E  PL   L      +S    V              D  + 
Sbjct: 1   YKG-VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRD 59

Query: 327 PRGQPEKSSQKV----------DNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHR 376
                   S ++          ++  T   +    +L +K   +         T +    
Sbjct: 60  SEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVH 119

Query: 377 GCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELL 413
             +  +  +     P      + +G+I   D+++ L+
Sbjct: 120 EVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 11/149 (7%), Positives = 37/149 (24%), Gaps = 16/149 (10%)

Query: 271 VPLRKM---IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 327
           VPL +M       +   S +  +YD++    + +     +              D     
Sbjct: 1   VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI 60

Query: 328 RGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFEN 387
           +     +                + + +                          +     
Sbjct: 61  QDGDYSNLDLSVGEALLKRPANFDGVHT--------CRATDRLDGIFDAIKHSRV----- 107

Query: 388 GPFPDFPSNDEAVGVITMEDVIEELLQEE 416
                   N +  G++++ D++  ++ ++
Sbjct: 108 HRLFVVDENLKLEGILSLADILNYIIYDK 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	464
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.81
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.79
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.77
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.77
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.77
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.77
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.76
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.76
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.75
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.75
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.75
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.74
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.74
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.74
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.73
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.73
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.71
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.71
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.68
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.68
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.68
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.67
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.67
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.66
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.64
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.57
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.33
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.3
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.24
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.23
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.18
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.17
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.16
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.12
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.12
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.12
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.11
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.03
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.01
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.98
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	97.97
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.97
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	97.95
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	97.91
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.88
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	97.82
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.79
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.73
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.64
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.6
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.48
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.23
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	82.74

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=3.3e-20  Score=160.72  Aligned_cols=102  Identities=19%  Similarity=0.316  Sum_probs=91.2

Q ss_pred             ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---------ccccccc
Q 012416          205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRK  275 (464)
Q Consensus       205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---------~~~~V~d  275 (464)
                      +.+|+++|+|..+++++++++|++ ++++.|.+++++++||+|++ |+++|+++.+|+++....         ...++.+
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~   78 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   78 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccccccccccccccc
Confidence            468999999999999999999998 99999999999999999876 899999999999865322         1457889


Q ss_pred             ccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          276 MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       276 IM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +|.++++++++++++.+++..|.++  +.+||+|+
T Consensus        79 ~m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~  111 (132)
T d1yava3          79 VMLTDIPRLHINDPIMKGFGMVINN--GFVCVEND  111 (132)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTC--SEEEEECT
T ss_pred             cccccccccccchhHHHHHHHHHhC--CEEEEEcc
Confidence            9999999999999999999999876  46999998

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.79  E-value=8.5e-20  Score=165.21  Aligned_cols=123  Identities=11%  Similarity=0.109  Sum_probs=105.9

Q ss_pred             CChhHHHHHHHhhcc-cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          189 LTHDETTIIAGALEL-TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       189 L~~~E~~~I~~vl~l-~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      +++.|+..++.+.+| .+.++.|+|++..++++++.+.|+. +|++.|.+++++++||+|++.++++|+++.+|++....
T Consensus         2 ~~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~   80 (179)
T d2ooxe1           2 VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   80 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence            456788899999996 8899999999988999999999999 99999999999999999976689999999999975321


Q ss_pred             c---------c--------------ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 012416          268 R---------D--------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN  312 (464)
Q Consensus       268 ~---------~--------------~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG  312 (464)
                      .         .              ......+|.++++++++++++.+++..|.+++.|.+||+|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g  148 (179)
T d2ooxe1          81 YYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG  148 (179)
T ss_dssp             HHHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECT
T ss_pred             hccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCC
Confidence            0         0              1123345788999999999999999999999999999999854

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.77  E-value=6.5e-19  Score=151.61  Aligned_cols=103  Identities=18%  Similarity=0.272  Sum_probs=93.5

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---cccccccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIR  279 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~~~V~dIM~r  279 (464)
                      |++.+|+++|++  +++++++++|+. ++.+.|.+++++++||+++  ++++|+++.+|+++....+   ..++.++|.+
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccccchhhhhhhh
Confidence            467899999985  789999999999 9999999999999999985  7899999999998764432   5688999999


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++++++.++++.|.+++.+.+||+|+
T Consensus        76 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  106 (127)
T d2ef7a1          76 SLITIREDSPITGALALMRQFNIRHLPVVDD  106 (127)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hccccccccchhHHHHHHHHcCceEEEEEeC
Confidence            9999999999999999999999999999998

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.5e-18  Score=148.12  Aligned_cols=99  Identities=15%  Similarity=0.107  Sum_probs=91.2

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEec
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  285 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~  285 (464)
                      ++|+++|++  ++.++++++|++ ++++.|.+++++.+||++++ ++++|+++.+|+++....  .++.++|.+++++++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~~~--~~v~~~~~~~~~~v~   74 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDLD--SSVFNKVSLPDFFVH   74 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCTT--SBSGGGCBCTTCCEE
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhhcc--ccccccccCccEEEC
Confidence            468999995  788999999999 99999999999999999865 899999999999976543  488999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          286 EDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       286 e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++.++++.|.+++.+.+||+|+
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvde   99 (121)
T d1vr9a3          75 EEDNITHALLLFLEHQEPYLPVVDE   99 (121)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEECT
T ss_pred             CCCCHHHHHHHHHhcCceeeeeECC
Confidence            9999999999999999999999998

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=2.1e-19  Score=156.50  Aligned_cols=101  Identities=13%  Similarity=0.232  Sum_probs=90.9

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----------ccccccc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------DAVPLRK  275 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----------~~~~V~d  275 (464)
                      .+|+++|++  +++++++++|+. ++++.|.+++++++||++++ ++++|+++.+|+++....          ...++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            369999997  688999999999 99999999999999999876 889999999999765321          1467899


Q ss_pred             ccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          276 MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       276 IM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        78 im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~  112 (141)
T d3ddja1          78 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK  112 (141)
T ss_dssp             HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HhCcccccccccchhhHHHHHHHHcCCCEEEEEcc
Confidence            99999999999999999999999999999999998

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=4.2e-19  Score=152.08  Aligned_cols=99  Identities=22%  Similarity=0.252  Sum_probs=72.7

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEec
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  285 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~  285 (464)
                      ++|+++|++  +++++++++|+. ++++.|.+++++++||+|++ |+++|+|+.+|++.....  .++.++|.+++++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~~--~~~~~~~~~~~~~v~   74 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPDE--EQLAMLVKRDVPVVK   74 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhcc--cchhhccccceeecc
Confidence            478999997  688999999998 99999999999999999876 899999999999976543  478899999999999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          286 EDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       286 e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++.++++.|.+++.+.+||+|+
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd~   99 (122)
T d2yzqa2          75 ENDTLKKAAKLMLEYDYRRVVVVDS   99 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hhhHHHHHHHHHHHcCcEEEEEEeC
Confidence            9999999999999999999999998

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1.2e-18  Score=150.51  Aligned_cols=98  Identities=16%  Similarity=0.161  Sum_probs=89.7

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHHcC-----CcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCC
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI  281 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~-----~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~  281 (464)
                      ||+.+|++  +++++++++|+. ++++.|++++     .+.+||+|++ ++++|+++.++++....+  .++.++|.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~~~--~~v~~im~~~~   75 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVNDDD--TLIADILNERV   75 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSCTT--SBHHHHSBSCC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeecccccccc--EEhhhhccCCC
Confidence            78999986  889999999998 9999998874     6889999876 899999999999876543  58999999999


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++++.++++.|.+++.+.+||+|+
T Consensus        76 ~~v~~~~~l~~a~~~m~~~~~~~lPVVD~  104 (127)
T d2ouxa2          76 ISVHVGDDQEDVAQTIRDYDFLAVPVTDY  104 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             ccCCCCCCHHHHHHHHHHhCCEEEEEEeC
Confidence            99999999999999999999999999998

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.76  E-value=1.3e-18  Score=149.75  Aligned_cols=102  Identities=12%  Similarity=0.216  Sum_probs=90.5

Q ss_pred             cccccccccC-cceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----ccccccccccc
Q 012416          206 KTAKDAMTPI-SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIR  279 (464)
Q Consensus       206 itV~dIMtPR-~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~dIM~r  279 (464)
                      .||+|||+.+ .+++++++++|+. ++++.|.+++++.+||+++  |+++|+++.+|+++....     ...++.++|.+
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~   78 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   78 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeeccc
Confidence            4799999864 4789999999999 9999999999999999974  799999999999764321     14679999999


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++.++.+++++.++++.|.+++.+.+||+|+
T Consensus        79 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  109 (127)
T d2rc3a1          79 QVAYVDLNNTNEDCMALITEMRVRHLPVLDD  109 (127)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             eeEEeccCccHHHHHHHHHHCCCcEEEEEEC
Confidence            9999999999999999999999999999986

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=6.7e-19  Score=150.70  Aligned_cols=101  Identities=14%  Similarity=0.231  Sum_probs=89.6

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-c----cccccccccccC
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R----DAVPLRKMIIRR  280 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-~----~~~~V~dIM~r~  280 (464)
                      +||+|+|++  +++++++++++. ++++.|.+++++++||++++ |+++|+++.+|++.... .    ....++++|.++
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~   76 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   76 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeecc
Confidence            479999985  788999999999 99999999999999999876 89999999999865322 1    135678898888


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       281 ~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.++++++++.++++.|.+++.+.+||+|+
T Consensus        77 ~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~  106 (123)
T d1y5ha3          77 IYYVDANASIQEMLNVMEEHQVRRVPVISE  106 (123)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred             ceeeeecchHHHHHHHHHHcCceEEEEEEC
Confidence            999999999999999999999999999987

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=1.1e-18  Score=153.30  Aligned_cols=101  Identities=20%  Similarity=0.293  Sum_probs=91.2

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-c----cccccccccccC
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R----DAVPLRKMIIRR  280 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-~----~~~~V~dIM~r~  280 (464)
                      .+|+|+|++  ++.++++++|+. ++++.|.+++++.+||++++ |+++|+++.+|+++... .    ...+++++|.++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~   78 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   78 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhcccccccccccccccc
Confidence            479999986  788999999998 99999999999999999876 89999999999975432 1    246789999999


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       281 ~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++.+++++.++++.|.+++.+.+||+|+
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  108 (142)
T d1pvma4          79 IPKVKSDYDVKDVAAYLSENGLERCAVVDD  108 (142)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEECT
T ss_pred             cccccchhhHHHHHHHHHHcCCcEEEEEec
Confidence            999999999999999999999999999998

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.75  E-value=1.2e-18  Score=152.25  Aligned_cols=101  Identities=20%  Similarity=0.253  Sum_probs=91.1

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc------------ccccc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------------DAVPL  273 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~------------~~~~V  273 (464)
                      ++|+|+|++  +++++++++|+. ++++.|.+++++++||+|++ ++++|+++.+|+++....            ...++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            479999996  788999999998 99999999999999999876 899999999999754321            14679


Q ss_pred             ccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          274 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       274 ~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        78 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  114 (139)
T d2o16a3          78 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK  114 (139)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET
T ss_pred             hHhhccccccccccchHHHHHHHHHHcCceEEEEEEC
Confidence            9999999999999999999999999999999999987

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=3.1e-18  Score=151.36  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=92.4

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--------------
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------  268 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--------------  268 (464)
                      +.+.+|+++|++  +++++++++++. +|++.|.+++++++||+|++ |+++|+++.+|++.....              
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            468899999985  799999999998 99999999999999999876 899999999999642110              


Q ss_pred             --------------------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 --------------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 --------------------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                          ...++.++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~  138 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG  138 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeC
Confidence                                134688999999999999999999999999999999999998

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.3e-18  Score=152.77  Aligned_cols=107  Identities=14%  Similarity=0.273  Sum_probs=93.2

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-------------
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-------------  269 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-------------  269 (464)
                      |...+++|+|.+..++++++.++|+. +|++.|.+++++++||++++.++++|+++.+|++......             
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            46789999999989999999999998 9999999999999999987668999999999997643210             


Q ss_pred             ------ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 ------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ------~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                            .....++|.++++++++++++.++++.|.+++.|.+||+|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~  135 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP  135 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC
Confidence                  12234677888999999999999999999999999999985

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.3e-18  Score=153.41  Aligned_cols=98  Identities=14%  Similarity=0.197  Sum_probs=89.4

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHHcC-----CcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCC
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI  281 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~-----~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~  281 (464)
                      +|+++|++  +++++++++|+. ++++.|++++     .+.+||++++ ++++|+++.+|+......  .++.++|.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~~~--~~v~~im~~~~   75 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADPR--TRVAEIMNPKV   75 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSCTT--CBSTTTSBSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhcccc--cchHHhcccCC
Confidence            68999996  889999999999 9999998775     6788999876 899999999999876543  58899999999


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++++.+|++.|.+++.+.+||||+
T Consensus        76 ~~v~~~~~~~~a~~~m~~~~~~~lPVVd~  104 (144)
T d2yvxa2          76 VYVRTDTDQEEVARLMADYDFTVLPVVDE  104 (144)
T ss_dssp             CCEESSCCHHHHHHHHHHSCCSEEEEECS
T ss_pred             ccCCCCChHHHHHHHHHHcCCCEEEEEeE
Confidence            99999999999999999999999999998

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=4.4e-18  Score=145.03  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=88.8

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCc
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIP  282 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~  282 (464)
                      +|+|+|++  +++++++++|+. ++++.|.+++++.+||.++  |+++|+++.+|+++....+    ..++.++|.++++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~   75 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV   75 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccccccceeEeeecccccc
Confidence            58999996  788999999999 9999999999999999974  7999999999998754322    4689999999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++++.++++.|++++.+.+||+|+
T Consensus        76 ~v~~~~~l~~a~~~m~~~~~~~l~V~~~  103 (120)
T d1pbja3          76 TISPRATIKEAAEKMVKNVVWRLLVEED  103 (120)
T ss_dssp             EECTTSCHHHHHHHHHHHTCSEEEEEET
T ss_pred             cccchhHHHHHHHHHHHcCCeEEEEEEC
Confidence            9999999999999999999999999765

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=1.3e-17  Score=144.49  Aligned_cols=101  Identities=13%  Similarity=0.284  Sum_probs=90.4

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccccCC
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRI  281 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~r~~  281 (464)
                      .+|+++|+.  +++++++++|+. ++++.|.+++++++||+|++ ++++|+++.+|+++....    ...+++++|.+++
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeecccccc
Confidence            479999984  889999999998 99999999999999999876 899999999999864322    2468999999999


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++++++.++++.|.+++.+.+||+++
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~~  109 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEEE  109 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999999999999999998765

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.71  E-value=1.8e-17  Score=145.95  Aligned_cols=104  Identities=15%  Similarity=0.012  Sum_probs=89.0

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC-CCcEEEEEEcchhcccccc--------------
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYR--------------  268 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d-~d~iVGIVt~kDLl~~~~~--------------  268 (464)
                      .+++|+|||++  +++++++++|+. ++++.|.+++++.+||++++ .+.++|+++..|++.....              
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            46799999995  889999999999 99999999999999999853 3689999999999754211              


Q ss_pred             ---------------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 ---------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 ---------------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                     ....+.++|.+++++|++++++.++++.|.+++.+.+||+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~  142 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM  142 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence                           012355678899999999999999999999999999999986

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.71  E-value=3.1e-17  Score=140.83  Aligned_cols=93  Identities=11%  Similarity=0.125  Sum_probs=80.5

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC-CCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN  295 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d-~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~  295 (464)
                      +++++++++|+. ++++.|.+++++++||+|+. .++++|+|+.+|+......+......+|.+++.++++++++.++++
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~   84 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAER   84 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHHHHHH
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCHHHHHH
Confidence            567899999999 99999999999999999852 3789999999999877654433344555667889999999999999


Q ss_pred             HHHhCCCcEEEEEec
Q 012416          296 EFQKGHSHIAVVYKD  310 (464)
Q Consensus       296 ~m~~~~~~~a~VVDe  310 (464)
                      .|.+++.+.+||+|+
T Consensus        85 ~m~~~~~~~lpVVd~   99 (126)
T d1zfja4          85 ILHEHRIEKLPLVDN   99 (126)
T ss_dssp             HHHHTTCSEEEEECT
T ss_pred             HHHhcCCcEEEEEcC
Confidence            999999999999998

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.68  E-value=6.6e-17  Score=143.05  Aligned_cols=102  Identities=9%  Similarity=0.174  Sum_probs=86.3

Q ss_pred             cccccccc-CcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----cccccccc---
Q 012416          207 TAKDAMTP-ISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMI---  277 (464)
Q Consensus       207 tV~dIMtP-R~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~~~V~dIM---  277 (464)
                      +++++|.+ +.++++++++.|+. ++++.|.+++++++||++++ ++++|+++.+|++......     ..++.++|   
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~   79 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR   79 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeee
Confidence            57788765 56899999999999 99999999999999999876 8999999999998654321     23455444   


Q ss_pred             ---ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          278 ---IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       278 ---~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                         ..++.++++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  115 (153)
T d2ooxe2          80 PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE  115 (153)
T ss_dssp             CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT
T ss_pred             ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC
Confidence               355678999999999999999999999999998

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=5.9e-17  Score=141.15  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             cccccccc-cccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----ccc-----
Q 012416          204 TEKTAKDA-MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVP-----  272 (464)
Q Consensus       204 ~~itV~dI-MtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~~~-----  272 (464)
                      -+++++++ +.+..+++++++++|+. +|++.|.+++++++||++++ ++++|+++.+|+++.....     ...     
T Consensus         4 ~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~   81 (140)
T d2nyca1           4 LKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL   81 (140)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHH
T ss_pred             ccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhh
Confidence            34667766 34457899999999998 99999999999999999876 8999999999998754322     111     


Q ss_pred             -cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          273 -LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       273 -V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                       ....+..++++|++++++.++++.|.+++.+.+||+|+
T Consensus        82 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~  120 (140)
T d2nyca1          82 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD  120 (140)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeC
Confidence             12334567889999999999999999999999999998

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=4.7e-17  Score=140.42  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=88.5

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--------------ccc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAV  271 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--------------~~~  271 (464)
                      ++|+++|++  ++.++++++|+. +|++.|.++|++++||++   ++++|+++..|++.....              ...
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccC
Confidence            479999997  677899999999 999999999999999985   479999999998765321              146


Q ss_pred             ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus        75 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~  113 (135)
T d3ddja2          75 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI  113 (135)
T ss_dssp             BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT
T ss_pred             CHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeC
Confidence            789999999999999999999999999999999999998

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.6e-17  Score=145.20  Aligned_cols=105  Identities=19%  Similarity=0.229  Sum_probs=87.5

Q ss_pred             ccccccccccCcce----EEEcCCCChHHHHHHHHHHcCCcEeeEEec-CCCcEEEEEEcchhcccccc-----------
Q 012416          205 EKTAKDAMTPISKA----FSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLSVDYR-----------  268 (464)
Q Consensus       205 ~itV~dIMtPR~dv----vtV~~d~tl~eeal~~m~~~~~Sr~PVvd~-d~d~iVGIVt~kDLl~~~~~-----------  268 (464)
                      ...|+|||.|+...    +.+++++|+. ++.+.|.+++++++||+++ +.++++|+++.+|++.+...           
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~   80 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST   80 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTT
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccc
Confidence            45789999987533    5667888998 9999999999999999953 34789999999999753210           


Q ss_pred             -----------------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 -----------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 -----------------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                                       ...+++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~  139 (169)
T d2j9la1          81 SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN  139 (169)
T ss_dssp             CEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             hhhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEEC
Confidence                             034578999999999999999999999999999999999876

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.9e-16  Score=138.39  Aligned_cols=105  Identities=12%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             ccccccccccc-CcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----ccc-----
Q 012416          204 TEKTAKDAMTP-ISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVP-----  272 (464)
Q Consensus       204 ~~itV~dIMtP-R~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~~~-----  272 (464)
                      -..++++++.+ ..+++++++++|+. ++++.|.+++++++||++++ ++++|+++.+|++......     ..+     
T Consensus         7 ~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~   84 (145)
T d2v8qe1           7 MSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL   84 (145)
T ss_dssp             GGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             hhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhcc
Confidence            34577777654 35789999999998 99999999999999999875 8999999999998765432     122     


Q ss_pred             -cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          273 -LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       273 -V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                       ....|..+++++++++++.++++.|.+++.+.+||+|+
T Consensus        85 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  123 (145)
T d2v8qe1          85 QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE  123 (145)
T ss_dssp             GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             chhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc
Confidence             23445678889999999999999999999999999998

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.66  E-value=1e-16  Score=137.79  Aligned_cols=102  Identities=11%  Similarity=0.092  Sum_probs=86.8

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC-CCcEEEEEEcchhccccccc--ccccccccccCCc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIP  282 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d-~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r~~~  282 (464)
                      ++|+|+|++  +++++++++|+. ++++.|.+++++++||++.+ .++++|+++..|+++....+  .......|.++++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce
Confidence            479999985  788999999998 99999999999999999532 37899999999998764332  2233344578889


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          283 RVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++.+++++.++++.|.+++.+.+||+|+
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd~  105 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVNK  105 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEcC
Confidence            9999999999999999999999999998

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=2.8e-16  Score=136.95  Aligned_cols=100  Identities=18%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----------------
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------  268 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----------------  268 (464)
                      ..+.++|+.  +++++++++|+. ++++.|.+++++++||+|++ ++++|+|+.+|+++....                 
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   79 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhh
Confidence            346778875  678999999998 99999999999999999876 899999999999764210                 


Q ss_pred             --cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          269 --DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       269 --~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                        ...++.++ ++++.++++++++.+|++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~-~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~  122 (145)
T d1o50a3          80 RLIAKNASEI-MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDE  122 (145)
T ss_dssp             CCSSCBHHHH-CBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hccccCHHHH-cCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeC
Confidence              02345565 466788999999999999999999999999998

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.57  E-value=1.6e-16  Score=135.48  Aligned_cols=93  Identities=11%  Similarity=0.205  Sum_probs=43.0

Q ss_pred             ceEEEcCCCChHHHHHHHHHHcCCcEeeEEec--CCCcEEEEEEcchhccccccc-ccccccccc--cCCcEecCCCCHH
Q 012416          217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG--NPTNIIGLILVKNLLSVDYRD-AVPLRKMII--RRIPRVSEDMPLY  291 (464)
Q Consensus       217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~--d~d~iVGIVt~kDLl~~~~~~-~~~V~dIM~--r~~~~V~e~~~l~  291 (464)
                      +++++++++|+. ++.+.|.+++++++||+++  ..++++|+|+.+|+....... +.++.++|.  .++.++++++++.
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCCHH
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCCHH
Confidence            557899999999 9999999999999999974  237899999999987543322 334555543  3578899999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 012416          292 DILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       292 eaL~~m~~~~~~~a~VVDe  310 (464)
                      +|++.|++++.+.+||+|+
T Consensus        84 ~a~~~m~~~~i~~lpVVd~  102 (120)
T d1jr1a4          84 EANEILQRSKKGKLPIVNE  102 (120)
T ss_dssp             HHHHHTCSCC---CEEEET
T ss_pred             HHHHHHHHcCccEEEEEcC
Confidence            9999999999999999998

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.33  E-value=1e-07  Score=80.64  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=54.5

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      -.+.+|+++|++  ++.++++++++. ++++.|.+++..++||+|++ |+++|+|+.+|++....
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             cccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            356889999986  677899999998 99999999999999999876 89999999999987653

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.30  E-value=5.3e-07  Score=76.35  Aligned_cols=40  Identities=13%  Similarity=0.185  Sum_probs=38.5

Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .|++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus         5 ~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~   44 (132)
T d2yzia1           5 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND   44 (132)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc
Confidence            4799999999999999999999999999999999999998

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=4.2e-07  Score=78.50  Aligned_cols=61  Identities=25%  Similarity=0.336  Sum_probs=54.2

Q ss_pred             cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      ...+.+|+++|++  +++++++++|+. ++.+.|.+++++++||+|++ |+++|+|+.+|++++.
T Consensus        95 ~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          95 QLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEETT-TEEEEEEEHHHHGGGG
T ss_pred             cccCCEeehhccc--CceEECcccccH-HHHHHHHHcCeeEEEEEeCC-CEEEEEEEHHHHHHHh
Confidence            3567899999996  678899999998 99999999999999999976 8999999999999763

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.23  E-value=4.1e-07  Score=76.79  Aligned_cols=60  Identities=18%  Similarity=0.272  Sum_probs=54.3

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      .+.+++++|++  +++++++++++. ++++.|.+++.+++||+|++ |+++|+|+.+|+++...
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            45789999986  778899999998 99999999999999999876 89999999999998754

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.18  E-value=7e-07  Score=74.56  Aligned_cols=40  Identities=13%  Similarity=0.101  Sum_probs=37.7

Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++++|.++++++.+++++.+|++.|.+++.+.+||+|+
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~   40 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD   40 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec
Confidence            3678999999999999999999999999999999999998

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.17  E-value=1.4e-06  Score=74.65  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=55.1

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      ..+.+++++|++  +++++++++++. ++.+.|.+++.+++||+|++ |+++|+|+.+|+++....
T Consensus        66 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          66 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSCH
T ss_pred             cccccccccccc--ccccccchhhHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHHHHhh
Confidence            356789999985  778999999998 99999999999999999876 899999999999987543

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.16  E-value=1.5e-06  Score=72.24  Aligned_cols=38  Identities=16%  Similarity=0.357  Sum_probs=35.9

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ++++|.++++++++++++.+|++.|.+++.+.+||+|+
T Consensus         2 V~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~   39 (120)
T d1pbja3           2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE   39 (120)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET
T ss_pred             hHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC
Confidence            67899999999999999999999999999999999876

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.12  E-value=8.4e-07  Score=76.45  Aligned_cols=62  Identities=16%  Similarity=0.295  Sum_probs=55.1

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  268 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~  268 (464)
                      ..+.+++++|++  +++++++++++. ++++.|.++++.++||+|++ |+++|+|+.+|+++...+
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHHHH
Confidence            356789999985  678899999998 99999999999999999876 899999999999976543

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.12  E-value=1.8e-06  Score=73.47  Aligned_cols=39  Identities=10%  Similarity=0.066  Sum_probs=37.4

Q ss_pred             ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++|.+++.++++++++.+|++.|.+++.+.+||+|+
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~   41 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA   41 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc
Confidence            578999999999999999999999999999999999998

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.12  E-value=2.8e-06  Score=71.13  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=37.8

Q ss_pred             cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..|+++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus         4 ~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~   43 (127)
T d2ef7a1           4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG   43 (127)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc
Confidence            4689999999999999999999999999999999999986

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.11  E-value=3.9e-07  Score=76.16  Aligned_cols=60  Identities=13%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~  265 (464)
                      .+.++.++|+.+.++++++++.++. ++++.|.+++.+++||+|++ |+++|+|+.+|+++.
T Consensus        59 ~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          59 HDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             -------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             cCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            3567888998888899999999998 99999999999999999876 899999999999864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.03  E-value=2.9e-06  Score=71.15  Aligned_cols=57  Identities=26%  Similarity=0.424  Sum_probs=51.5

Q ss_pred             cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416          204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  265 (464)
Q Consensus       204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~  265 (464)
                      .+.+++++|++  ++.++++++++. ++.+.|.+++.+++||+|+  |+++|+|+.+|++++
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          68 KDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKD  124 (127)
T ss_dssp             GGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             cceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHH
Confidence            35789999985  778899999998 9999999999999999984  799999999999875

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.01  E-value=4.1e-06  Score=70.11  Aligned_cols=34  Identities=6%  Similarity=-0.055  Sum_probs=32.2

Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       277 M~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      |+++|++|++++++.+|++.|.+++.+.+||+|+
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~   36 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET   36 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee
Confidence            6778899999999999999999999999999997

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.98  E-value=4.4e-06  Score=70.61  Aligned_cols=39  Identities=10%  Similarity=0.219  Sum_probs=37.7

Q ss_pred             ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ||+++|.+++.+|++++++.+|++.|.+++.+.+||+|+
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~   41 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD   41 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc
Confidence            789999999999999999999999999999999999998

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.97  E-value=2.8e-06  Score=70.86  Aligned_cols=60  Identities=13%  Similarity=0.169  Sum_probs=48.6

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      ..+.+++++|.+  ++.++++++++. ++++.|.+++.+++||+|++ |+++|+|+.+|++++.
T Consensus        57 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-~~liGiit~~dil~~~  116 (122)
T d2yzqa2          57 PDEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRY  116 (122)
T ss_dssp             -------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHT
T ss_pred             hcccchhhcccc--ceeecchhhHHH-HHHHHHHHcCcEEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            345679999986  678899999998 99999999999999999876 8999999999998754

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.97  E-value=7.5e-06  Score=70.11  Aligned_cols=41  Identities=7%  Similarity=0.235  Sum_probs=39.1

Q ss_pred             ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +.+++++|.+++.+|++++++.++++.|++++.+.+||+|+
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~   50 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT   50 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc
Confidence            56899999999999999999999999999999999999996

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=97.95  E-value=6e-06  Score=69.43  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=36.6

Q ss_pred             ccccccc--ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMI--IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM--~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+++++|  .+++.+|.+++++.+|++.|.+++.+.+||+|+
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~   43 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP   43 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeec
Confidence            4678888  467899999999999999999999999999998

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=7e-06  Score=69.65  Aligned_cols=39  Identities=21%  Similarity=0.260  Sum_probs=36.3

Q ss_pred             ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+.++|.++|+++++++++.++++.|.+++.+.+||+|+
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~   43 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR   43 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc
Confidence            466788899999999999999999999999999999998

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.88  E-value=9.4e-06  Score=67.82  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=36.7

Q ss_pred             ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++++|.++++++++++++.++++.|.+++.+.+||++.
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~   40 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR   40 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEE
Confidence            578999999999999999999999999999999999964

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=1e-05  Score=67.10  Aligned_cols=39  Identities=15%  Similarity=0.325  Sum_probs=37.1

Q ss_pred             ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .++++|.+++++|++++++.++++.|.+++.+.+||+|+
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~   40 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR   40 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC
Confidence            478899999999999999999999999999999999997

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.2e-06  Score=71.79  Aligned_cols=60  Identities=12%  Similarity=0.173  Sum_probs=53.0

Q ss_pred             ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416          203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  267 (464)
Q Consensus       203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~  267 (464)
                      ....+++++|+|  +++++++++++. ++++.|.+++..++||.++  |+++|+|+.+|++++..
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            346779999997  678999999998 9999999999999999874  79999999999998653

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=3.3e-05  Score=65.25  Aligned_cols=36  Identities=8%  Similarity=0.250  Sum_probs=33.1

Q ss_pred             cccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          275 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       275 dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      .+|..++.++.+++++.+|++.|.+++...+||+|+
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~   48 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE   48 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec
Confidence            346678899999999999999999999999999998

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.64  E-value=6.1e-05  Score=64.61  Aligned_cols=39  Identities=18%  Similarity=0.401  Sum_probs=34.1

Q ss_pred             ccccccc---cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          272 PLRKMII---RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       272 ~V~dIM~---r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      |+++++.   +++++|.+++++.+|++.|.+++...+||+|+
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~   43 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS   43 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc
Confidence            4555543   47889999999999999999999999999998

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=1.2e-05  Score=69.21  Aligned_cols=58  Identities=16%  Similarity=0.208  Sum_probs=50.8

Q ss_pred             cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      ..+.++|.+  +++++++++++. ++++.|.+++.+++||+|++.|+++|+|+.+|++++.
T Consensus        96 ~~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          96 EVYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             ceeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            345778875  678999999998 9999999999999999986558999999999999764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=4.3e-05  Score=64.77  Aligned_cols=56  Identities=14%  Similarity=0.218  Sum_probs=48.2

Q ss_pred             ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416          207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  266 (464)
Q Consensus       207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~  266 (464)
                      ++...|.+  +++++.+++++. ++++.|.+++..++||+|++ |+++|+|+.+|++++.
T Consensus        85 ~~~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~l~GiVt~~dii~~l  140 (145)
T d2v8qe1          85 QHRSHYFE--GVLKCYLHETLE-AIINRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQAL  140 (145)
T ss_dssp             GGCCSCCC--SCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             chhhhccC--CCeEECCCCcHH-HHHHHHHHcCceEEEEEccC-CEEEEEEEHHHHHHHH
Confidence            44556664  667899999998 99999999999999999865 8999999999998764

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.23  E-value=0.00013  Score=63.65  Aligned_cols=40  Identities=8%  Similarity=-0.020  Sum_probs=35.6

Q ss_pred             cccccccc--cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          271 VPLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       271 ~~V~dIM~--r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      ..+.|+|.  .++.+++++.++.+|+..|.+++.+.+||+|+
T Consensus        20 ~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~   61 (179)
T d2ooxe1          20 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS   61 (179)
T ss_dssp             SBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET
T ss_pred             CEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeC
Confidence            35778874  46789999999999999999999999999995

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=82.74  E-value=0.0025  Score=56.85  Aligned_cols=58  Identities=14%  Similarity=0.043  Sum_probs=47.8

Q ss_pred             CcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416          251 TNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  310 (464)
Q Consensus       251 d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe  310 (464)
                      +++.|+.+..++.....  ...++++|.....++..+++-..+.+.|.+.+...+||+|+
T Consensus       119 ~~l~~f~dl~~l~~~~~--~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~  176 (213)
T d1lkvx_         119 RRMFVFEDILKLDDRSI--QLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKD  176 (213)
T ss_dssp             HHHCCGGGGGGSCHHHH--HHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHH
T ss_pred             hhccccccHHHHccccH--hHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHH
Confidence            56788888877765443  34678887777788999999999999999999999999998