Citrus Sinensis ID: 012425

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
MDYNGEDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLSWEHSRMPYWCFPWTSEVTDIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSEDFCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVAVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKISG
cccccccccEEEHHHHHHccccEEEEEEEEEEEcccEEcccccEEEEEEEEEcccccccEEEEEEcccccccccccccccEEEEEEEEEEEEcccEEEEEcccEEEEEEEccccccccccccccccEEEcHHHHHHHHHHHHHHHHccccccccccEEccccccccEEEEEEEEEEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHcccccEEEEEcEEEEEEcEEEEEEEEccccEEEEccccHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccccccHHHHHcccccccEEEEEEEEEEEEcccccccccccccEEEEEEEEccccEEEEEEEcccHHHHccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEccccccccEEEEEEEEEEcc
cccccccEEEEEHHHHHHccccEEEEEEEEEEcccccccccccEEEEEEEEEcccccccEEEEEEcccHHHcccccccccEEEEEEEEEEEEccEEEEEEccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEHHHccccccEEEEEEEEEEEEccccEEEEEEEcccccccccEEEcccHHcccccccccccccccHHHHcccccccEEEEEEEcccHHHHHHHccccccEEEEEEEEEEEccccEEEEEccccEEEEcccccccEccHHHHHHHHHHHHcccccccccccccccccccccccccccEHHHHHccccccccEEEEEEEEEcccccHHHHccccccEEEEEEEEccccEEEEEEEccHHHHHccccccHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEcEEEcc
mdyngedyrfLKIKDAILSINQKVSFVGVILevgspkqskgtdsfctikvtdeshtkdgisvNIFAesmeklpyivsVGDIILLSHVVMKAHNKQAYALFNKKFSsfalydgkggedflpyqvssrffvrDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFvwdgtdappaqiSKKLEDEmdhelplqveplplsrdilcsfpavGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFtrlryvptndnliVERQRSYDERlswehsrmpywcfpwtsevtdidysedgpfvtlkDVLTHSQVTAKFKCVVRVVAAlpwrsedfcsplgnyrirltledptaRIHAFVYaedgeklfggypfVDVLKRKINKLLGvavsdgqeikdaprnppwvqcclksyyidrndiwgsrqyrifdtkisg
MDYNGEDYRFLKIKDAILSINQKVSFVGVILevgspkqskgtdSFCTIKvtdeshtkdgiSVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLnfqfkedskKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTrlryvptndnliveRQRSYDERLSWEHSRMPYWCFPWTSEVTDIDYSEDGPFVTLKDVLThsqvtakfKCVVRVVAAlpwrsedfcsplGNYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVAVsdgqeikdaprnppwVQCCLKSYyidrndiwgsrQYRIFDTKISG
MDYNGEDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLSWEHSRMPYWCFPWTSEVTDIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSEDFCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVAVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKISG
******DYRFLKIKDAILSINQKVSFVGVILEVGS*******DSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGT*********************QVEPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLSWEHSRMPYWCFPWTSEVTDIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSEDFCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVAVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDT****
******D**FLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGE***************QDKRIIAAVRKWL***************REIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQ**************************DIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSEDFCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVA**********PRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKISG
MDYNGEDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLSWEHSRMPYWCFPWTSEVTDIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSEDFCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVAVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKISG
****GEDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLSWEHSRMPYWCFPWTSEVTDIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSEDFCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVAVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKISG
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MDYNGEDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLSWEHSRMPYWCFPWTSEVTDIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSEDFCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVAVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKISG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query464 2.2.26 [Sep-21-2011]
Q6NKX5454 Protection of telomeres p yes no 0.946 0.966 0.411 7e-95
Q56Y52467 Protection of telomeres p no no 0.963 0.957 0.389 2e-90
A9JTY4144 Protection of telomeres p no no 0.293 0.944 0.287 1e-16
Q9NUX5 634 Protection of telomeres p yes no 0.362 0.264 0.254 2e-11
Q95K48 634 Protection of telomeres p N/A no 0.362 0.264 0.248 6e-11
P62597 778 Protection of telomeres p yes no 0.359 0.214 0.247 4e-10
Q91WC1 640 Protection of telomeres p no no 0.351 0.254 0.238 4e-08
P29550493 Telomere-binding protein N/A no 0.295 0.277 0.239 0.0001
>sp|Q6NKX5|POT1B_ARATH Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B PE=1 SV=1 Back     alignment and function desciption
 Score =  348 bits (892), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 192/467 (41%), Positives = 286/467 (61%), Gaps = 28/467 (5%)

Query: 6   EDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIF 65
           +DY+FL+I+DA  +++  V+ +GVI+E+G    S G+D  CT+K+ D  ++  G+ V   
Sbjct: 7   DDYKFLRIQDAFKALHLHVNLIGVIVELGF---SNGSDCSCTLKIVDPWYSGSGLPVKFV 63

Query: 66  AESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSS-FALYDGKGGEDFLPYQVS 124
           A ++  LP + S+GDIILLS V +   N++  AL N+  SS FAL++GK   D +PYQ S
Sbjct: 64  ARTIRDLPRVESIGDIILLSRVKIVLINRKITALCNETTSSSFALFNGKHSVDSIPYQSS 123

Query: 125 SRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGE 184
            +F +R+QDK  ++ +R+W++ ++F++ S  F  L++IK+G+  N++C++ HI +V K  
Sbjct: 124 PKFLMREQDKNFLSNLREWMITYKFEDGSCCFTSLKDIKEGECSNLSCQIVHISKVYKDR 183

Query: 185 WMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGI 244
           W  FVWDGT+ PP  I  K E      LPL VEP  L   +L  FP  GS+LR+I+D+  
Sbjct: 184 WYLFVWDGTEMPPCNILVKSE-----RLPLCVEPEMLPTYMLRKFPTFGSVLRIIVDRVS 238

Query: 245 EKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLS 304
           EK  +H L+ G+ VKL N+  QV+ GLW    T  T+++Y  + +      QR   E+ S
Sbjct: 239 EKQAIHCLQPGQHVKLLNLFFQVNMGLWNATFTPSTKMQYTMSREMEAFSPQRMCGEKFS 298

Query: 305 WEHSRMPYW-----CFPWT-SEVTDIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAAL 358
                 P W     C   + SE+T + + +D PFV+L D+LT+  VTAKF+CVVR +   
Sbjct: 299 ------PRWNPIARCISRSHSEITGVAH-DDAPFVSLMDILTYHNVTAKFRCVVRFIQVY 351

Query: 359 PWRSEDFCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFG-GYPFVDVLKRKINKLLGV 417
           P          GN ++   LED TARIHA +YA++GEK FG      + L +K+N+LLG 
Sbjct: 352 PRDVRKLRDINGNIKLVAILEDATARIHASLYADEGEKFFGCDESDEEALVKKLNRLLG- 410

Query: 418 AVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKISG 464
               G+E++  PRNPPWVQCCL S+Y  + D W SR++RIFDT I+ 
Sbjct: 411 ----GEEMEKVPRNPPWVQCCLFSFYKHKMDQWESRRFRIFDTWINA 453
Negatively regulates telomerase activity and participate in telomere end-protection. Does not bind single-stranded telomeric DNA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q56Y52|POT1A_ARATH Protection of telomeres protein 1a OS=Arabidopsis thaliana GN=POT1A PE=1 SV=1 Back     alignment and function description
>sp|A9JTY4|POT1C_ARATH Protection of telomeres protein 1c OS=Arabidopsis thaliana GN=POT1C PE=2 SV=2 Back     alignment and function description
>sp|Q9NUX5|POTE1_HUMAN Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1 Back     alignment and function description
>sp|Q95K48|POTE1_MACFA Protection of telomeres protein 1 OS=Macaca fascicularis GN=POT1 PE=2 SV=1 Back     alignment and function description
>sp|P62597|POTE1_CHICK Protection of telomeres protein 1 OS=Gallus gallus GN=POT1 PE=1 SV=1 Back     alignment and function description
>sp|Q91WC1|POTE1_MOUSE Protection of telomeres protein 1 OS=Mus musculus GN=Pot1 PE=2 SV=1 Back     alignment and function description
>sp|P29550|TEBA_STYMY Telomere-binding protein subunit alpha OS=Stylonychia mytilis GN=STY56V PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
297734334491 unnamed protein product [Vitis vinifera] 0.982 0.928 0.639 1e-177
225456171487 PREDICTED: uncharacterized protein LOC10 0.982 0.936 0.639 1e-177
213495878462 protection of telomeres 1 protein [Popul 0.980 0.984 0.626 1e-170
255579267449 conserved hypothetical protein [Ricinus 0.965 0.997 0.627 1e-170
197282461463 putative single-strand telomere binding 0.982 0.984 0.603 1e-166
213495880467 protection of telomeres 1 protein [Helia 0.991 0.985 0.546 1e-148
213495900466 protection of telomeres 1 protein [Nicot 0.987 0.982 0.541 1e-145
449439461449 PREDICTED: protection of telomeres prote 0.959 0.991 0.542 1e-142
213495898466 protection of telomeres 1 protein [Solan 0.987 0.982 0.515 1e-141
213495876466 protection of telomeres 1 protein [Lactu 0.974 0.969 0.502 1e-135
>gi|297734334|emb|CBI15581.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/458 (63%), Positives = 364/458 (79%), Gaps = 2/458 (0%)

Query: 6   EDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIF 65
           +DYRF+ I+DA+ S+NQKV+ +GV++E+G PK+SKGTD FCT+K+ D+SH   GISVN+F
Sbjct: 33  DDYRFMAIEDAMASLNQKVNIIGVVVEMGMPKRSKGTDCFCTVKIVDQSHRSSGISVNVF 92

Query: 66  AESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSS 125
           AE+MEKLP++ S GDII  SHVVMK H +   A+FNKKFSSFA+++GK GEDF PYQVSS
Sbjct: 93  AENMEKLPHVESAGDIIQFSHVVMKTHGQDVNAVFNKKFSSFAIFEGKYGEDFSPYQVSS 152

Query: 126 RFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGEW 185
            F  RDQDK+ +  +RKWL + +  +  K+ L LREI++G+R+++ CK+ HICEV K EW
Sbjct: 153 NFRPRDQDKKFVKDLRKWLADSEIDKGMKEPLSLREIREGERVDLFCKILHICEVTKDEW 212

Query: 186 MAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGIE 245
           + FVWDGTD PP  +   LEDEMD+ LPLQ+E LPLSRDILC+FP VG+ILRVI+D+G E
Sbjct: 213 IIFVWDGTDTPPVSVQTVLEDEMDNPLPLQLESLPLSRDILCTFPTVGTILRVIVDQGSE 272

Query: 246 KHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLSW 305
           K  LHLLK+GKWV+   ++C+V AGLW GVL   T+LRY+P  D L+ +RQR YDERLS 
Sbjct: 273 KLSLHLLKVGKWVRFLKIICEVQAGLWRGVLMPSTKLRYMPDADLLVSQRQRFYDERLSS 332

Query: 306 EHSRMPYWCFPWTSEVTDIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSEDF 365
           +  RMP   FPW S +T+ DY E  P VTL DV+THS+VTAKFKCVVRV A +PWR+EDF
Sbjct: 333 KWERMPLSSFPWPSRITETDY-EHVPVVTLMDVVTHSEVTAKFKCVVRVAAIVPWRAEDF 391

Query: 366 CSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVAVS-DGQE 424
           CSP G YR RLTLEDPTARIHAFV+AEDGEK F GYP VDVLKRK NKLLG+A S DG E
Sbjct: 392 CSPPGTYRTRLTLEDPTARIHAFVHAEDGEKFFEGYPPVDVLKRKRNKLLGIAESDDGNE 451

Query: 425 IKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKI 462
           I +APRNPPWVQCC+KSYY+ + D+WGSR+YRIF T++
Sbjct: 452 INNAPRNPPWVQCCIKSYYLVKGDVWGSRRYRIFGTRL 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456171|ref|XP_002278684.1| PREDICTED: uncharacterized protein LOC100262869 [Vitis vinifera] Back     alignment and taxonomy information
>gi|213495878|gb|ACJ49159.1| protection of telomeres 1 protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255579267|ref|XP_002530479.1| conserved hypothetical protein [Ricinus communis] gi|223529976|gb|EEF31902.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|197282461|gb|ACH57392.1| putative single-strand telomere binding protein [Carica papaya] Back     alignment and taxonomy information
>gi|213495880|gb|ACJ49160.1| protection of telomeres 1 protein [Helianthus argophyllus] Back     alignment and taxonomy information
>gi|213495900|gb|ACJ49170.1| protection of telomeres 1 protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449439461|ref|XP_004137504.1| PREDICTED: protection of telomeres protein 1a-like [Cucumis sativus] gi|449503109|ref|XP_004161838.1| PREDICTED: protection of telomeres protein 1a-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|213495898|gb|ACJ49169.1| protection of telomeres 1 protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|213495876|gb|ACJ49158.1| protection of telomeres 1 protein [Lactuca sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
TAIR|locus:2164295454 AtPOT1b "protection of telomer 0.956 0.977 0.410 5.1e-90
TAIR|locus:2051214467 AtPOT1a "Protection of Telomer 0.952 0.946 0.391 7.7e-87
UNIPROTKB|Q9NUX5 634 POT1 "Protection of telomeres 0.450 0.329 0.253 5.5e-14
RGD|1582873 636 Pot1b "protection of telomeres 0.452 0.330 0.245 9.7e-14
UNIPROTKB|F1NSB0 778 POT1 "Protection of telomeres 0.448 0.267 0.247 1.4e-13
UNIPROTKB|P62597 778 POT1 "Protection of telomeres 0.448 0.267 0.247 1.4e-13
UNIPROTKB|Q95K48 634 POT1 "Protection of telomeres 0.450 0.329 0.248 2.5e-13
UNIPROTKB|F1P716 785 POT1 "Uncharacterized protein" 0.450 0.266 0.248 9.9e-13
ZFIN|ZDB-GENE-110324-1 773 pot1 "protection of telomeres 0.424 0.254 0.278 1e-12
MGI|MGI:2141503 640 Pot1a "protection of telomeres 0.394 0.285 0.238 4.7e-11
TAIR|locus:2164295 AtPOT1b "protection of telomeres 1b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 189/460 (41%), Positives = 284/460 (61%)

Query:     6 EDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIF 65
             +DY+FL+I+DA  +++  V+ +GVI+E+G    S G+D  CT+K+ D  ++  G+ V   
Sbjct:     7 DDYKFLRIQDAFKALHLHVNLIGVIVELGF---SNGSDCSCTLKIVDPWYSGSGLPVKFV 63

Query:    66 AESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSS-FALYDGKGGEDFLPYQVS 124
             A ++  LP + S+GDIILLS V +   N++  AL N+  SS FAL++GK   D +PYQ S
Sbjct:    64 ARTIRDLPRVESIGDIILLSRVKIVLINRKITALCNETTSSSFALFNGKHSVDSIPYQSS 123

Query:   125 SRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGE 184
              +F +R+QDK  ++ +R+W++ ++F++ S  F  L++IK+G+  N++C++ HI +V K  
Sbjct:   124 PKFLMREQDKNFLSNLREWMITYKFEDGSCCFTSLKDIKEGECSNLSCQIVHISKVYKDR 183

Query:   185 WMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGI 244
             W  FVWDGT+ PP  I  K E      LPL VEP  L   +L  FP  GS+LR+I+D+  
Sbjct:   184 WYLFVWDGTEMPPCNILVKSE-----RLPLCVEPEMLPTYMLRKFPTFGSVLRIIVDRVS 238

Query:   245 EKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLS 304
             EK  +H L+ G+ VKL N+  QV+ GLW    T  T+++Y  + +      QR   E+ S
Sbjct:   239 EKQAIHCLQPGQHVKLLNLFFQVNMGLWNATFTPSTKMQYTMSREMEAFSPQRMCGEKFS 298

Query:   305 WEHSRMPYWCFPWTSEVTDIDYSEDGPFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSED 364
                + +        SE+T + + +D PFV+L D+LT+  VTAKF+CVVR +   P     
Sbjct:   299 PRWNPIARCISRSHSEITGVAH-DDAPFVSLMDILTYHNVTAKFRCVVRFIQVYPRDVRK 357

Query:   365 FCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFG-GYPFVDVLKRKINKLLGVAVSDGQ 423
                  GN ++   LED TARIHA +YA++GEK FG      + L +K+N+LLG     G+
Sbjct:   358 LRDINGNIKLVAILEDATARIHASLYADEGEKFFGCDESDEEALVKKLNRLLG-----GE 412

Query:   424 EIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKIS 463
             E++  PRNPPWVQCCL S+Y  + D W SR++RIFDT I+
Sbjct:   413 EMEKVPRNPPWVQCCLFSFYKHKMDQWESRRFRIFDTWIN 452
GO:0000723 "telomere maintenance" evidence=IEA;IMP
GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0016233 "telomere capping" evidence=IMP
GO:0043047 "single-stranded telomeric DNA binding" evidence=TAS
TAIR|locus:2051214 AtPOT1a "Protection of Telomeres 1a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NUX5 POT1 "Protection of telomeres protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1582873 Pot1b "protection of telomeres 1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSB0 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P62597 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q95K48 POT1 "Protection of telomeres protein 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|F1P716 POT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110324-1 pot1 "protection of telomeres 1 homolog" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2141503 Pot1a "protection of telomeres 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NKX5POT1B_ARATHNo assigned EC number0.41110.94610.9669yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017843001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (448 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
    • • 0.484
GSVIVG00001485001
SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (307 aa)
    • • 0.471
GSVIVG00004199001
SubName- Full=Chromosome undetermined scaffold_623, whole genome shotgun sequence; (295 aa)
    • • 0.445

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
cd04497138 cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfami 5e-34
pfam02765141 pfam02765, Telo_bind, Telomeric single stranded DN 4e-29
smart00976137 smart00976, Telo_bind, Telomeric single stranded D 6e-23
>gnl|CDD|239943 cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information 
 Score =  123 bits (312), Expect = 5e-34
 Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 2/137 (1%)

Query: 8   YRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESH-TKDGISVNIFA 66
           Y++  +  A+      V+ +GV+++ G P +SKGTD  CT+ +TD S    DG++V +F 
Sbjct: 1   YKYTPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFR 60

Query: 67  ESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSR 126
            + E LP IV VGDIILL  V ++++N +   + N + SS+A++ G  G   +P Q S  
Sbjct: 61  PNEESLP-IVKVGDIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDDGVVPIPQQSSKP 119

Query: 127 FFVRDQDKRIIAAVRKW 143
                +++  +  +RKW
Sbjct: 120 VEFGPEEEPSVEELRKW 136

POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. A second OB fold has not been predicted in S. pombe POT1. OnTEBP binds the extreme 3-prime end of telomeric DNA. It is heterodimeric and contains four OB folds - three in the alpha subunit (two in the N-terminal domain and one in the C-terminal domain) and one in the beta subunit. OB1Nalpha, together with the second OB fold of the N-terminal domain of OnTEBP alpha subunit and the beta subunit OB fold, forms a deep cleft that binds ssDNA. Length = 138
>gnl|CDD|217218 pfam02765, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13 Back     alignment and domain information
>gnl|CDD|214949 smart00976, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 464
KOG4757522 consensus Predicted telomere binding protein [Gene 100.0
cd04497138 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f 100.0
PF02765146 POT1: Telomeric single stranded DNA binding POT1/C 100.0
cd04498123 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds simil 99.86
PRK12366637 replication factor A; Reviewed 99.35
PRK07218423 replication factor A; Provisional 99.1
PRK12366 637 replication factor A; Reviewed 99.08
TIGR00617608 rpa1 replication factor-a protein 1 (rpa1). This f 99.03
PRK06386358 replication factor A; Reviewed 99.01
PRK14699484 replication factor A; Provisional 99.01
PRK15491374 replication factor A; Provisional 98.99
PRK07211485 replication factor A; Reviewed 98.93
PRK15491374 replication factor A; Provisional 98.82
PRK14699484 replication factor A; Provisional 98.55
PRK07211485 replication factor A; Reviewed 98.46
PRK08402355 replication factor A; Reviewed 98.25
TIGR00617608 rpa1 replication factor-a protein 1 (rpa1). This f 97.96
cd04475101 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor 97.92
PRK06461129 single-stranded DNA-binding protein; Reviewed 97.82
PRK07218 423 replication factor A; Provisional 97.55
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 97.38
PRK07217311 replication factor A; Reviewed 97.04
PRK06461129 single-stranded DNA-binding protein; Reviewed 96.91
PRK08402355 replication factor A; Reviewed 96.78
cd04497138 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f 96.67
KOG4757522 consensus Predicted telomere binding protein [Gene 96.67
cd0352475 RPA2_OBF_family RPA2_OBF_family: A family of oligo 96.33
KOG3416134 consensus Predicted nucleic acid binding protein [ 96.28
PRK07217311 replication factor A; Reviewed 95.64
PF02765146 POT1: Telomeric single stranded DNA binding POT1/C 95.58
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 95.02
PF154891144 CTC1: CST, telomere maintenance, complex subunit C 94.92
cd0448978 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol 94.8
cd04481106 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc 94.66
PRK06386358 replication factor A; Reviewed 94.45
cd04474104 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor 93.88
cd04475101 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor 93.16
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 93.08
cd0447895 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor 92.88
cd0448584 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp 92.51
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 92.35
cd04476166 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds cor 91.33
cd0449283 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol 90.84
PF08646146 Rep_fac-A_C: Replication factor-A C terminal domai 89.82
cd0448392 hOBFC1_like hOBFC1_like: A subfamily of OB folds s 89.58
cd04474104 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor 89.01
cd0448875 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f 82.79
>KOG4757 consensus Predicted telomere binding protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-52  Score=412.37  Aligned_cols=427  Identities=24%  Similarity=0.296  Sum_probs=327.7

Q ss_pred             CCceeeEehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEE
Q 012425            5 GEDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILL   84 (464)
Q Consensus         5 ~~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l   84 (464)
                      .+.|+|..+++++...|+.||+||||+++++|++++|+||+||++|+|+.+.+.||+|++|+++-++||.|.++||||+|
T Consensus         4 ~ds~k~Iri~da~kk~~tiVNl~GiVkef~pp~qs~g~D~~~tv~IvDp~~ss~gLtv~lfSkt~edLP~Ik~~GDiill   83 (522)
T KOG4757|consen    4 RDSLKLIRISDALKKKNTIVNLIGIVKEFTPPRQSLGKDWVCTVYIVDPDYSSIGLTVHLFSKTGEDLPVIKQVGDIILL   83 (522)
T ss_pred             ccchheeechHHHHhcCcEEEEEEEEEeccChhhccCCceEEEEEEeCCCCCCCCcEEEEecCchhhCccccccCcEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEECCeeEEeecCCc-eeEEEEeCCCCCCccccccCCCcccChhHHHHHHHHHHHHhhcccccCCccccccccCC
Q 012425           85 SHVVMKAHNKQAYALFNKKF-SSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIK  163 (464)
Q Consensus        85 ~rvkv~~~~g~~~~~~~~~~-ss~~lf~g~~~~~~~P~~~s~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~~f~~L~di~  163 (464)
                      ||+|||.|+.+.+|+++..+ |+|++|+|+ +.+..|||+|+.|-++       .+||+|++.+.+...+ ++..+.++.
T Consensus        84 hRiKiq~y~~rtqgl~s~~fss~~~~Feg~-svd~i~~qssp~f~~t-------~nlrew~a~~~s~~w~-c~t~~~k~f  154 (522)
T KOG4757|consen   84 HRIKIQSYRDRTQGLCSDQFSSAWALFEGN-SVDTICYQSSPRFMKT-------GNLREWFALYKSKIWD-CQTNLHKNF  154 (522)
T ss_pred             EEEEEEEhhhhhhhhhhcchhhhhhhhcCC-CCCccCCCCchhhhcc-------chHHHHHHHHhCcccc-cccCHhHhh
Confidence            99999999999999999776 448999999 8889999999998777       7899999988776555 577788888


Q ss_pred             CCCeEeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCccccccccc-ccCCCCCcccCCCCcccccccCCCcccEEEEEEcc
Q 012425          164 DGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDE-MDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDK  242 (464)
Q Consensus       164 ~~~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~-~~~~~~~~~e~~~l~~~~l~~~p~~G~~l~V~~~~  242 (464)
                      ++..-.|.||+++........|. .|||-|-+....+++...-- -..-.|+++++  .+...+..||..|.+.+...+.
T Consensus       155 el~cs~l~~q~v~g~s~~~~~w~-lv~d~~~h~~~s~~~~~~~~~ySlr~~l~~~~--~~T~~~l~Fp~~g~ts~~r~~r  231 (522)
T KOG4757|consen  155 ELLCSSLARQNVTGLSYPSVSWS-LVSDITPHQRCSFYAQVIKTWYSLRNPLLYVT--DPTENLLFFPMSGYTSSSRWDR  231 (522)
T ss_pred             hhhcchhhhheeeccccccceee-eeecccccccccccccceeeEeeccccccccc--CchHhhhhcccCCceeeeeeec
Confidence            88888888899988777778888 59996655554443321100 01224666665  5677778899999888888888


Q ss_pred             chhHHHhhccCCCCEEEEeceEEEEeCcEEEEEEecccceEEcCCCChHHHHHHHHHHH---Hhh-------ccC---CC
Q 012425          243 GIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDE---RLS-------WEH---SR  309 (464)
Q Consensus       243 ~~~~~~~~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~~l~~~d~~v~~r~r~y~~---r~~-------~~~---~~  309 (464)
                      +.++++.+.+.+|.-+..+|+...-+     .+|.++  ++.+  .|..-..|.-++..   |+.       ++.   ++
T Consensus       232 v~~e~~i~ilq~~~d~~~~Nl~~e~D-----~~f~~~--~~sl--~dh~~lsrc~~~~~saprl~~sl~lhc~~ehll~e  302 (522)
T KOG4757|consen  232 VSEEFSICILQDEHDFYCRNLIKEGD-----YVFMKN--VRSL--IDHLGLSRCILHGDSAPRLNMSLELHCSEEHLLNE  302 (522)
T ss_pred             ccccccchhccccchhhhhhhccccc-----cccccc--chhh--hHHHHHHHHHHHhhccccccceeEeecCcchhhcc
Confidence            88888788888888888888876211     122222  2111  13333333222221   110       000   11


Q ss_pred             CCc--ccCCCCCccccCCCCCCCCcccHHhhhcCcccCceeE-EEEEEEe---ecCCCcccc----------cc------
Q 012425          310 MPY--WCFPWTSEVTDIDYSEDGPFVTLKDVLTHSQVTAKFK-CVVRVVA---ALPWRSEDF----------CS------  367 (464)
Q Consensus       310 ~~~--~~~p~~~~it~~~~~~~~p~~Tl~diLt~~~v~~kfr-~~VRVV~---~~P~~~edf----------~~------  367 (464)
                      .+-  +.. ..+..|.+++. .+|+++|||+++.+.++.||| |+||+|+   .+|.++|.+          |.      
T Consensus       303 v~~e~r~~-~q~~~tgi~~v-~a~fvsl~Ds~t~~~vt~k~R~~vvrfva~~~~~P~sve~l~~i~i~l~~ic~l~n~r~  380 (522)
T KOG4757|consen  303 VKPEKRLY-VQNCQTGIEAV-IAPFVSLMDSETPFIVTEKKRTCVVRFVAHVINYPASVELLTIITILLAPICNLLNPRK  380 (522)
T ss_pred             cCccccee-ecccccCcchh-hcccchhhhhccccccchhcceeeeeehhhcccccchhhhhhhhhhhhHHHhhhhchhh
Confidence            110  111 12566778888 999999999999999999999 9999999   999999988          20      


Q ss_pred             -----------------------C----------------Cc------cEEEEEEEecCCceEEEEEecCchhhhcC---
Q 012425          368 -----------------------P----------------LG------NYRIRLTLEDPTARIHAFVYAEDGEKLFG---  399 (464)
Q Consensus       368 -----------------------~----------------~g------~~~~~l~leD~t~~l~~~v~~~da~~f~~---  399 (464)
                                             +                .+      .|..+++|.|.++.|++++.+.  ..+|+   
T Consensus       381 H~~l~~le~s~p~s~~~fgc~~~~~~~~v~~ln~Lv~~e~~~~vP~~~~~v~~~~l~~~s~~l~~~l~d~--~~~fqi~d  458 (522)
T KOG4757|consen  381 HRLLVQLEDSWPKSLTQFGCLSQPPSSYVWMLNLLVRDESNVTVPVIFFDVDAAELINSSKKLPCNLADH--QMTFQIKD  458 (522)
T ss_pred             hhhhhhhcccCcccceeeeeccCCHHHHHHHHHHHhccccccccccccchhheeeeccccccccchhccc--cceEEecc
Confidence                                   0                11      1788999999999999999875  78887   


Q ss_pred             -CCCchHHHHHHHHHHhcCCCCCCccccCCCCCCcceeEeEEeeeeCCCCcceeeEEEeeeee
Q 012425          400 -GYPFVDVLKRKINKLLGVAVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTK  461 (464)
Q Consensus       400 -~~~~~~~l~~kl~~l~g~~e~~~~~~~~~~~~~pw~~cci~sY~~~~~~~~~~r~y~iF~T~  461 (464)
                       .+..-+.|+|+..+.+.+-|++..    +....||++|.||||.+. +.+-.+.+||+|+|.
T Consensus       459 s~il~~~~l~~~i~~~~~~~~~p~~----~~~~~pw~~~~vk~y~i~-n~~d~q~~~q~~~~~  516 (522)
T KOG4757|consen  459 SLILIWGNLEERIQHHISKGESPTL----AAEETPWFDIYVKEYIIG-NTKDHQSLLQKRWRG  516 (522)
T ss_pred             eeeeecccHHHHHHHHHhcCCCCcc----cccccccceeeeeeeeec-CCcchHHHHHHHhhc
Confidence             234568899999999998888755    557899999999999987 444456556555443

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information
>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold [] Back     alignment and domain information
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1) Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>PRK07218 replication factor A; Provisional Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>PRK06386 replication factor A; Reviewed Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK08402 replication factor A; Reviewed Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>PRK07218 replication factor A; Provisional Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>PRK07217 replication factor A; Reviewed Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>PRK08402 replication factor A; Reviewed Back     alignment and domain information
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information
>KOG4757 consensus Predicted telomere binding protein [General function prediction only] Back     alignment and domain information
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only] Back     alignment and domain information
>PRK07217 replication factor A; Reviewed Back     alignment and domain information
>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold [] Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>PF15489 CTC1: CST, telomere maintenance, complex subunit CTC1 Back     alignment and domain information
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit Back     alignment and domain information
>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) Back     alignment and domain information
>PRK06386 replication factor A; Reviewed Back     alignment and domain information
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) Back     alignment and domain information
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing Back     alignment and domain information
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) Back     alignment and domain information
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
3kjo_A299 Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length 2e-12
1xjv_A294 Crystal Structure Of Human Pot1 Bound To Telomeric 2e-12
1k8g_A320 Crystal Structure Of The N-Terminal Domain Of Oxytr 3e-04
1otc_A495 The O. Nova Telomere End Binding Protein Complexed 4e-04
>pdb|3KJO|A Chain A, Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length = 299 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 5/173 (2%)
Query: 24  VSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIIL 83
           V+  GV+     P  SKGTD    + + D+++ K  ++  +F+ + E LP I   GDI+ 
Sbjct: 23  VNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVK--LTCLLFSGNYEALPIIYKNGDIVR 80
Query: 84  LSHVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKW 143
              + ++ + K+   + +  F+S   ++G  G   +P   S  F    +D +++ A+R W
Sbjct: 81  FHRLKIQVYKKETQGITSSGFASLT-FEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVW 139
Query: 144 LLNFQFKEDSKKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAP 196
                    S   L L +++  Q  ++ C++    EV    ++  VWDGT  P
Sbjct: 140 ASTHM--SPSWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTP 190
>pdb|1XJV|A Chain A, Crystal Structure Of Human Pot1 Bound To Telomeric Single- Stranded Dna (Ttagggttag) Length = 294 Back     alignment and structure
>pdb|1K8G|A Chain A, Crystal Structure Of The N-Terminal Domain Of Oxytricha Nova Telomere End Binding Protein Alpha Subunit Both Uncomplexed And Complexed With Telomeric Ssdna Length = 320 Back     alignment and structure
>pdb|1OTC|A Chain A, The O. Nova Telomere End Binding Protein Complexed With Single Strand Dna Length = 495 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
1jb7_A495 Telomere-binding protein alpha subunit; DNA-protei 2e-64
1xjv_A294 Protection of telomeres 1; protein-DNA complex, si 7e-59
1qzg_A187 Protection of telomeres protein 1; protrein-DNA co 1e-29
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Length = 495 Back     alignment and structure
 Score =  215 bits (547), Expect = 2e-64
 Identities = 71/519 (13%), Positives = 160/519 (30%), Gaps = 119/519 (22%)

Query: 5   GEDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTK------- 57
           G  Y ++++  A L+  Q   F  V+++   P ++      C++K+ D +          
Sbjct: 33  GHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAG 92

Query: 58  ---DGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKF-SSFALYDGK 113
              D  ++ ++A+  E LP I   GDII +    ++ +N Q     N  + SS+AL+   
Sbjct: 93  DASDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTD 152

Query: 114 GGE------------DFLPYQVSSRFF-VRDQDKRIIAAVRKWLLNFQFKEDS----KKF 156
                          D  P+  SS+   +   +  I+  +RKW   +             
Sbjct: 153 KRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWANQYFSSYSVISSDMYT 212

Query: 157 LLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQV 216
            L +        ++  K+  + E+ +      + D +      +S KL+           
Sbjct: 213 ALNKAQAQKGDFDVVAKILQVHELDEYTNELKLKDASGQVFYTLSLKLKFPHVRT----- 267

Query: 217 EPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVL 276
                                                 G+ V++++      +     ++
Sbjct: 268 --------------------------------------GEVVRIRSATYDETSTQKKVLI 289

Query: 277 T-HFTRLRYVPTNDNLIVERQRSYDERLSWEHSRMPYWCFPWTSEVTDIDYS-EDGPFVT 334
             H++ +     +  L  E +    +  S E + +          +T++D      P  +
Sbjct: 290 LSHYSNIITFIQSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVLTEVDKKHAALPSTS 349

Query: 335 LKDVLTHSQVTAK------FKCVVRVVAALPWRSEDFCSPLGN----------------- 371
           L+D+  H+    +      F+    V    P   +++                       
Sbjct: 350 LQDLFHHADSDKELQAQDTFRTQFYVTKIEPSDVKEWVKGYDRKTKKSSSLKGASGKGDN 409

Query: 372 -YRIRLTLEDP-------TARIHAFVYAEDGEKLFGGYPFVDVLKRKINKLLGVAVSDGQ 423
            ++++  ++D        T R+  +     G   F            ++K          
Sbjct: 410 IFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKA------DNLHKNADARKKLED 463

Query: 424 EIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKI 462
             +   +   +V   ++           +  Y I DTK+
Sbjct: 464 SAELLTKFNSYVDAVVER---------RNGFYLIKDTKL 493
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Length = 294 Back     alignment and structure
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Length = 187 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
1jb7_A495 Telomere-binding protein alpha subunit; DNA-protei 100.0
1xjv_A294 Protection of telomeres 1; protein-DNA complex, si 100.0
1qzg_A187 Protection of telomeres protein 1; protrein-DNA co 100.0
4hik_A143 Protection of telomeres protein 1; specificity, pl 99.98
4gop_C444 Putative uncharacterized protein; OB fold, ssDNA b 99.13
1jmc_A246 Protein (replication protein A (RPA)); human ssDNA 98.42
2k50_A115 Replication factor A related protein; uncharacteri 98.36
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 98.2
4gop_C444 Putative uncharacterized protein; OB fold, ssDNA b 98.08
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 98.04
1jmc_A246 Protein (replication protein A (RPA)); human ssDNA 98.03
2kbn_A109 Conserved protein; nucleic acid binding protein, b 97.65
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 97.55
3dm3_A105 Replication factor A; probably plays AN essential 97.53
2k50_A115 Replication factor A related protein; uncharacteri 97.32
3e0e_A97 Replication protein A; structural genomics, PSI-2, 97.32
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 97.29
2kbn_A109 Conserved protein; nucleic acid binding protein, b 97.21
1wjj_A145 Hypothetical protein F20O9.120; DNA-binding protei 97.07
1wjj_A145 Hypothetical protein F20O9.120; DNA-binding protei 97.01
3dm3_A105 Replication factor A; probably plays AN essential 96.68
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 96.09
3e0e_A97 Replication protein A; structural genomics, PSI-2, 95.55
1xjv_A294 Protection of telomeres 1; protein-DNA complex, si 94.87
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 94.33
1qzg_A187 Protection of telomeres protein 1; protrein-DNA co 92.73
1miu_A738 BRCA2, breast cancer type 2 susceptibility protein 91.8
4gop_B136 Putative uncharacterized protein; OB fold, ssDNA b 91.23
3ebe_A200 Protein MCM10 homolog; OB-fold, zinc finger, CCCH, 91.03
3u4z_A109 Telomerase-associated protein 82; TEB1, processivi 90.2
3kdf_D132 Replication protein A 32 kDa subunit; wheat GERM c 89.93
4hik_A143 Protection of telomeres protein 1; specificity, pl 89.31
1jb7_A 495 Telomere-binding protein alpha subunit; DNA-protei 88.95
1l1o_C181 Replication protein A 70 kDa DNA-binding subunit; 86.85
2pi2_A270 Replication protein A 32 kDa subunit; FULL-length 84.68
3u58_A213 Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1 83.28
3u50_C172 Telomerase-associated protein 82; TEB1, processivi 82.26
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Back     alignment and structure
Probab=100.00  E-value=1.8e-80  Score=653.04  Aligned_cols=383  Identities=20%  Similarity=0.311  Sum_probs=329.4

Q ss_pred             CCceeeEehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCC-----CCCe-----EEEEeccCcCCCCC
Q 012425            5 GEDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHT-----KDGI-----SVNIFAESMEKLPY   74 (464)
Q Consensus         5 ~~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~-----~~gl-----~v~iF~~~~e~LP~   74 (464)
                      .+.|+|++|++|....++.|||||||+|+++|++|+|+||+|||+|+|+|+.     +.||     +|+||+++.++||.
T Consensus        33 ~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~LP~  112 (495)
T 1jb7_A           33 GHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPI  112 (495)
T ss_dssp             ---CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCC
T ss_pred             cCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHCCC
Confidence            5679999999998778999999999999999999999999999999999998     2489     99999999999999


Q ss_pred             CCCCCCEEEEeeEEEEEECCeeEEeecCCc-eeEEEEeCCC------------CCCccccccC-CCcccChhHHHHHHHH
Q 012425           75 IVSVGDIILLSHVVMKAHNKQAYALFNKKF-SSFALYDGKG------------GEDFLPYQVS-SRFFVRDQDKRIIAAV  140 (464)
Q Consensus        75 v~~~GDII~l~rvkv~~~~g~~~~~~~~~~-ss~~lf~g~~------------~~~~~P~~~s-~~~~~~~~e~~~v~~L  140 (464)
                      |.++||||+|||++|+.|+|++++++++.+ ||||||++..            +.++.||+.| .+|+++++|++++..|
T Consensus       113 V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~~L  192 (495)
T 1jb7_A          113 IHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNL  192 (495)
T ss_dssp             CCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHHHH
T ss_pred             CCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHHHH
Confidence            977999999999999999999999999776 8999999977            6778999988 7799999999999999


Q ss_pred             HHHHhhcccc---cCCccccccc-cCCCCCeEeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCcccccccccccCCCCCcc
Q 012425          141 RKWLLNFQFK---EDSKKFLLLR-EIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQV  216 (464)
Q Consensus       141 r~w~~~~~~~---~~~~~f~~L~-di~~~~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~  216 (464)
                      |+|+.++.+.   .++.+|++|+ ||++++||||+||||++++.++++++|||||||++|+++                 
T Consensus       193 R~W~~~~~~~~~~~~~~~f~~L~~di~~~~f~DLv~qVv~~~~~d~~~~~L~VwDgT~~~~~~-----------------  255 (495)
T 1jb7_A          193 RKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYTNELKLKDASGQVFYT-----------------  255 (495)
T ss_dssp             HHHHHHHHHHSCSSCGGGSCCGGGGGGCSSCEEEEEEEEEEEECSSSEEEEEEEETTCCEEEE-----------------
T ss_pred             HHHHHhcccccccccccchhhhhhhhccCCceeEEEEEeEEeccCCCeEEEEEEeCCCCCcce-----------------
Confidence            9999887653   3567899999 999999999999999999988899999999999998864                 


Q ss_pred             cCCCCcccccccCCCc--ccEEEEEEccchhHHH-hhccCCCCEEEEeceEEEEeCcEEEEEEecccceE------EcCC
Q 012425          217 EPLPLSRDILCSFPAV--GSILRVIIDKGIEKHI-LHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLR------YVPT  287 (464)
Q Consensus       217 e~~~l~~~~l~~~p~~--G~~l~V~~~~~~~~~~-~~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~------~l~~  287 (464)
                            .+++|++|..  |++++|..++..++.+ .+.++.|+|   +|+.          ++..+++++      ++++
T Consensus       256 ------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~~l~~  316 (495)
T 1jb7_A          256 ------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAKIQDD  316 (495)
T ss_dssp             ------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHHSCCC
T ss_pred             ------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhcccch
Confidence                  3456889999  9999999886655443 578999999   6776          455567776      7766


Q ss_pred             CChHHHHHHHHHHHHhhccCCCCCcccCCCCCccccCC--CCCCCCcccHHhhhcC----cccCce--eEEEEEEEeecC
Q 012425          288 NDNLIVERQRSYDERLSWEHSRMPYWCFPWTSEVTDID--YSEDGPFVTLKDVLTH----SQVTAK--FKCVVRVVAALP  359 (464)
Q Consensus       288 ~d~~v~~r~r~y~~r~~~~~~~~~~~~~p~~~~it~~~--~~~~~p~~Tl~diLt~----~~v~~k--fr~~VRVV~~~P  359 (464)
                      +   +.++.     +       +|+++.++++.+|+++  |+ ++|++||||||++    +++++|  |||.||||+|||
T Consensus       317 ~---~~~~~-----~-------~~~~~~~~~~~lT~~~~~~~-~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P  380 (495)
T 1jb7_A          317 H---SVEVA-----S-------LKKNVSLNAVVLTEVDKKHA-ALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEP  380 (495)
T ss_dssp             C---HHHHH-----H-------TTSSSCSSCEECEEECGGGT-TSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEES
T ss_pred             h---hhhhh-----h-------cccccCCCCCcCCeecccCC-CCCcEEHHHHhcCcccCccccccccEEEEEEEEEecC
Confidence            5   33321     1       4666767778888888  99 9999999999977    889898  999999999999


Q ss_pred             CCccccc-----------cCCc-------cEEEEEEEecCC-------ceEEEEEecCchhhhcCCCC---------chH
Q 012425          360 WRSEDFC-----------SPLG-------NYRIRLTLEDPT-------ARIHAFVYAEDGEKLFGGYP---------FVD  405 (464)
Q Consensus       360 ~~~edf~-----------~~~g-------~~~~~l~leD~t-------~~l~~~v~~~da~~f~~~~~---------~~~  405 (464)
                      +++||||           ++.|       .|+|+|+|||+|       +||+|||+|+||++||+ +.         .+.
T Consensus       381 ~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~-l~a~nL~~n~~~~~  459 (495)
T 1jb7_A          381 SDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN-VKADNLHKNADARK  459 (495)
T ss_dssp             SSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS-SCCCCTTTCHHHHH
T ss_pred             CCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC-CChHhhhcCHHHHH
Confidence            9999999           4456       699999999999       99999999999999998 42         268


Q ss_pred             HHHHHHHHHhcCCCCCCccccCCCCCCcceeEeEEeeeeCCCCcceeeEEEeeeeeEC
Q 012425          406 VLKRKINKLLGVAVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKIS  463 (464)
Q Consensus       406 ~l~~kl~~l~g~~e~~~~~~~~~~~~~pw~~cci~sY~~~~~~~~~~r~y~iF~T~i~  463 (464)
                      .|++||..|.-            ..+  ||+|||+.         ....|+||+|+|.
T Consensus       460 ~L~e~~~~l~~------------~~~--~~d~~~~~---------~~~~y~~~~t~~~  494 (495)
T 1jb7_A          460 KLEDSAELLTK------------FNS--YVDAVVER---------RNGFYLIKDTKLI  494 (495)
T ss_dssp             HHHHHHHHHHS------------TTE--EEEEEEEE---------ETTEEEEESEEEC
T ss_pred             HHHHHHHHhcc------------CCc--eEEEEEEe---------ecceEEeeeeeec
Confidence            99999997653            122  99999933         4778999999985
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Back     alignment and structure
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Back     alignment and structure
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A* Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 Back     alignment and structure
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Back     alignment and structure
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A Back     alignment and structure
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A Back     alignment and structure
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila} Back     alignment and structure
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B Back     alignment and structure
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A* Back     alignment and structure
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Back     alignment and structure
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3 Back     alignment and structure
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Back     alignment and structure
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 464
d1jb7a1169 b.40.4.3 (A:36-204) Telomere end binding protein a 8e-42
d1xjva1140 b.40.4.3 (A:6-145) Protection of telomeres protein 3e-39
d1qzga_170 b.40.4.3 (A:) Protection of telomeres protein 1, P 1e-38
d1xjva2151 b.40.4.3 (A:149-299) Protection of telomeres prote 2e-11
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Length = 169 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Telomere end binding protein alpha subunit
species: Oxytricha nova [TaxId: 200597]

 Score =  144 bits (364), Expect = 8e-42
 Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 24/164 (14%)

Query: 8   YRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESH----------TK 57
           Y ++++  A L+  Q   F  V+++   P ++      C++K+ D +             
Sbjct: 1   YEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDAS 60

Query: 58  DGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNKQAYALFNKKF-SSFALYDG---- 112
           D  ++ ++A+  E LP I   GDII +    ++ +N Q     N  + SS+AL+      
Sbjct: 61  DYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRS 120

Query: 113 --------KGGEDFLPYQVSSRFFVRDQ-DKRIIAAVRKWLLNF 147
                       D  P+  SS+    ++ +  I+  +RKW   +
Sbjct: 121 VTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWANQY 164
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 170 Back     information, alignment and structure
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
d1xjva1140 Protection of telomeres protein 1, Pot1 {Human (Ho 100.0
d1jb7a1169 Telomere end binding protein alpha subunit {Oxytri 100.0
d1qzga_170 Protection of telomeres protein 1, Pot1 {Fission y 100.0
d1xjva2151 Protection of telomeres protein 1, Pot1 {Human (Ho 99.93
d1jmca2122 Replication protein A 70 KDa subunit (RPA70) {Huma 98.59
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 97.58
d1wjja_145 Hypothetical protein At4g28440 (F20O9.120) {Thale 97.45
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 97.43
d1wjja_145 Hypothetical protein At4g28440 (F20O9.120) {Thale 96.9
d1jmca2122 Replication protein A 70 KDa subunit (RPA70) {Huma 96.3
d1xjva1140 Protection of telomeres protein 1, Pot1 {Human (Ho 96.19
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 95.56
d1jb7a2124 Telomere end binding protein alpha subunit {Oxytri 95.44
d1jb7a1169 Telomere end binding protein alpha subunit {Oxytri 94.88
d1jb7a3167 Telomere end binding protein alpha subunit {Oxytri 93.4
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 92.3
d1l1oc_178 Replication protein A 70 KDa subunit (RPA70) {Huma 90.5
d1qzga_170 Protection of telomeres protein 1, Pot1 {Fission y 89.34
d1xjva2151 Protection of telomeres protein 1, Pot1 {Human (Ho 83.07
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-38  Score=277.39  Aligned_cols=138  Identities=22%  Similarity=0.400  Sum_probs=129.7

Q ss_pred             CceeeEehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEEe
Q 012425            6 EDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLS   85 (464)
Q Consensus         6 ~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~   85 (464)
                      ++|.|++|+++.  .|+.|||||||+|+++|++|+|+||+|+|+|+|+|+  .||+|+||+++.++||.|.++||||+||
T Consensus         2 ~~Y~Y~~la~l~--~~~~vnv~gVV~~~~~p~~s~g~D~~~tl~I~D~S~--~gl~v~iF~~~~~~LP~v~~~GDII~l~   77 (140)
T d1xjva1           2 TNYIYTPLNQLK--GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN--VKLTCLLFSGNYEALPIIYKNGDIVRFH   77 (140)
T ss_dssp             CCCCCCCGGGCC--SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC--CEEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred             CcceEeEHHHcc--CCCEEEEEEEEeecCCCEEcCCCeEEEEEEEEeCCC--CCeEEEEECCChHHCCCCCCCCCEEEEE
Confidence            589999999986  588999999999999999999999999999999997  4799999999999999998899999999


Q ss_pred             eEEEEEECCeeEEeecCCceeEEEEeCCCCCCccccccCCCcccChhHHHHHHHHHHHHhhcc
Q 012425           86 HVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQ  148 (464)
Q Consensus        86 rvkv~~~~g~~~~~~~~~~ss~~lf~g~~~~~~~P~~~s~~~~~~~~e~~~v~~Lr~w~~~~~  148 (464)
                      |++|+.|||+++++++.++ ||++|+|..++++.|++++++|+++++|+++++.||+|++++.
T Consensus        78 r~~v~~~~~~~~~~~~~~~-ss~~F~g~~g~~~~p~~ss~~~~~~~~d~~~~~~LR~Wa~~~~  139 (140)
T d1xjva1          78 RLKIQVYKKETQGITSSGF-ASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHM  139 (140)
T ss_dssp             EEEEEEETTEEEEEEEEEE-EEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEECCeEEEEecCCE-EEEEEeCCCCCcccceEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999988764 5778999999999999999999999999999999999998864
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1jb7a3 b.40.4.3 (A:329-495) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure