Citrus Sinensis ID: 012450

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
Protein Sequence
MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRKEVEEPHPKRLKYL
Secondary Structure (PSIPRED)
ccccccccEEccccccccEEEcccccccccccccEEEccccccccccccccccccccEEEccccccEEccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccEEccHHccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccEEEEEccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEEEccccccEEEEEccccccccccEEEEEEEEcccccccccccccccccEEEEEEEEEccccccccccEEEEEEEEEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccccHHHcccHcccEEEcccccccccccccccccccEEEEccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccHccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHHHHcccEEEccccccccccccccccccEEcccccccccccccccccccHHEHEccccHcHHHcHHHHHHHHHHHHHHHcccccccccHHHccccccEEEEcccccccHHHHccccccEEEEEcccccccccccccEEEEEEEEEccccccccccEEEEEEEEEccccccEEccccccccccccccEEEEEEcccccccccccccccccccEEEEEEEEEcccccccccEEEEEEcEEEEEEEcccccccccccccccccccccccHHHcccc
Coil and Loop (DISEMBL)
MQHHGKLNQIIMAACNiftktpnpslIQHLNKLVILNlsgcsklkslpeissagnIEKILLdgtaieelpssiGCLSRLlelnlgdcknlktlpsslcklKSLEEICltgsaieelpspiECLSALcvldlgdckslkslklpfdglysltylyltdcaitelpeslglLSSLEELYLErnnferipeSIIRLSKLSSLLVSYCERlqslpklpcnlywldaqhcttleslsglfssYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKisypalqghvvlpgneipmwfssqgmgssitlkmqpgcfsnnkvfGFVFCAIVAFrdhhvrdwSFKFYCEFkiklkdcdphVIQRYLgrvnyvepdhlllgyyffnhqdlngcweyncvpEAVQFYFKKVLgsetetldccgvkkcgihlfhasdsmdsmedpskvfnrkeveephpkrlkyl
Flexible Loop (DISEMBL)
MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFhasdsmdsmedpskvfnrkeveephpkrlkyl
Low Complexity Region (SEG)
MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITelpeslgllssleelyleRNNFERIPESIIRlsklssllvsYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRKEVEEPHPKRLKYL
Disordered region (IsUnstruct)
******LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHA******************************
Disordered Region (DISOPRED)
MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASD****************************
Disordered Region (DISEMBL)
MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRK*************
Disordered Region (DISPRO)
MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASD****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRKEVEEPHPKRLKYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	463	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.626	0.253	0.335	2e-28
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.377	0.134	0.356	4e-15
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.406	0.183	0.335	7e-15
Q9FL92	1372	Probable WRKY transcripti	no	no	0.866	0.292	0.261	2e-14
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.274	0.067	0.372	5e-14
Q7KRY7	1851	Protein lap4 OS=Drosophil	yes	no	0.423	0.105	0.306	2e-13
O82500	1095	Putative disease resistan	no	no	0.524	0.221	0.261	8e-13
F1MCA7	1536	Leucine-rich repeat-conta	yes	no	0.442	0.133	0.268	2e-12
B0W6M9	628	Leucine-rich repeat prote	N/A	no	0.373	0.275	0.325	7e-12
Q80TE7	1490	Leucine-rich repeat-conta	yes	no	0.431	0.134	0.274	7e-12

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 159/340 (46%), Gaps = 50/340 (14%)

Query: 29   HLNKLVILNLSGCSKLKSLPEISSAGNIE-KILLDGTAIEELPSSI-GCLSRLLELNLGD 86
            ++  L  L L  C  L+ LPEI      E +I + G+ I ELPSSI    + + +L L +
Sbjct: 686  NVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWN 745

Query: 87   CKNLKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECLSALCVLDLGDCKSLK------- 138
             KNL  LPSS+C+LKSL  + ++G S +E LP  I  L  L V D  D   L+       
Sbjct: 746  MKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIR 805

Query: 139  ----------------SLKLP--FDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYL 178
                              + P   +GL+SL YL L+ C + +  LPE +G LSSL++L L
Sbjct: 806  LNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDL 865

Query: 179  ERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSY 238
             RNNFE +P SI +L  L SL +  C+RL  LP+LP  L  L       L          
Sbjct: 866  SRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMAL---------- 915

Query: 239  KCVFFYLNENFKLDR-KLRGIVEDALQNIQLMATARWKEI---REKISYPALQGHVVLPG 294
            K + + + +  KL R KL     D + N  L A   ++ I   R  IS        V  G
Sbjct: 916  KFIHYLVTKRKKLHRVKLDDAHNDTMYN--LFAYTMFQNISSMRHDISASDSLSLTVFTG 973

Query: 295  N----EIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFC 330
                 +IP WF  QG  SS+++ +    +  +K  GF  C
Sbjct: 974  QPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 106/185 (57%), Gaps = 10/185 (5%)

Query: 29   HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK 88
            +L+ L  L+LSGCS L+S P IS +  I+ + L+ TAIEE+P  +   + L  L L +CK
Sbjct: 908  NLSSLETLDLSGCSSLRSFPLISES--IKWLYLENTAIEEIPD-LSKATNLKNLKLNNCK 964

Query: 89   NLKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL 147
            +L TLP+++  L+ L    +   + +E LP  +  LS+L +LDL  C SL++  L     
Sbjct: 965  SLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVN-LSSLMILDLSGCSSLRTFPLIS--- 1020

Query: 148  YSLTYLYLTDCAITELPESLGLLSSLEELYLER-NNFERIPESIIRLSKLSSLLVSYCER 206
             ++ +LYL + AI E+P ++G L  L +L ++     E +P   + LS L  L +S C  
Sbjct: 1021 TNIVWLYLENTAIEEIPSTIGNLHRLVKLEMKECTGLEVLPTD-VNLSSLMILDLSGCSS 1079

Query: 207  LQSLP 211
            L++ P
Sbjct: 1080 LRTFP 1084

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 9/197 (4%)

Query: 5   GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-EISSAGNIEKILLDG 63
           G++ ++ +    I    P+ S +  L KL + N    S L  LP +  + GN+  + L  
Sbjct: 360 GQVEELTLIGGRIHA-LPSASGMSSLQKLTVDN----SSLAKLPADFGALGNLAHVSLSN 414

Query: 64  TAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECL 123
           T + +LP+SIG L  L  L+L D   L +LP+S  +L  L+E+ L G+ I ELPS +   
Sbjct: 415 TKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNGNRIHELPS-MGGA 473

Query: 124 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERN-N 182
           S+L  L + D  +L  L   F  L +L +L L++  + ELP + G L +L+ L L+ N  
Sbjct: 474 SSLQTLTVDDT-ALAGLPADFGALRNLAHLSLSNTQLRELPANTGNLHALKTLSLQGNQQ 532

Query: 183 FERIPESIIRLSKLSSL 199
              +P S+  LS L  L
Sbjct: 533 LATLPSSLGYLSGLEEL 549

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 191/471 (40%), Gaps = 70/471 (14%)

Query: 7    LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAI 66
            L  + +  C      P    + HL    ++NLSGC+++KS PEI    NIE + L GT I
Sbjct: 617  LEVVDLQGCTRLQSFPATGQLLHLR---VVNLSGCTEIKSFPEIPP--NIETLNLQGTGI 671

Query: 67   EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECLSA 125
             ELP SI      ++ N  +  NL      L  + +LE+  L   +++ ++ +  +    
Sbjct: 672  IELPLSI------VKPNYRELLNLLAEIPGLSGVSNLEQSDLKPLTSLMKISTSYQNPGK 725

Query: 126  LCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFER 185
            L  L+L DC  L+SL      L  L  L L+ C  +EL    G   +L+ELYL       
Sbjct: 726  LSCLELNDCSRLRSLP-NMVNLELLKALDLSGC--SELETIQGFPRNLKELYL------- 775

Query: 186  IPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYL 245
                                 ++ +P+LP +L + +A  C +L+S+   F     V +  
Sbjct: 776  -----------------VGTAVRQVPQLPQSLEFFNAHGCVSLKSIRLDFKKLP-VHYTF 817

Query: 246  NENFKLDRKLRGIVEDALQNIQLMATARWKEI-REK----ISYPALQGHVVLPGNEI--P 298
            +  F L  +   +V D L  +Q MA    K I RE+     S   +Q        E+   
Sbjct: 818  SNCFDLSPQ---VVNDFL--VQAMANVIAKHIPRERHVTGFSQKTVQRSSRDSQQELNKT 872

Query: 299  MWFS---SQGMGSSITLKMQPGCFS--------NNKVFGFVFCAIVAFRDHHVRDWSFKF 347
            + FS         +  L +QPG  S         N + GF     VAF + +  D  F  
Sbjct: 873  LAFSFCAPSHANQNSKLDLQPGSSSMTRLDPSWRNTLVGFAMLVQVAFSEGYCDDTDFGI 932

Query: 348  YCEFKIKLKDCDPHVIQ-----RYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEA 402
             C  K K K+   H  +       LG+   VE DH  + +      D +   + +   + 
Sbjct: 933  SCVCKWKNKEGHSHRREINLHCWALGKA--VERDHTFVFFDVNMRPDTDEGNDPDIWADL 990

Query: 403  VQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRKEVE 453
            V F F  V        D C V +CG+ L  A +   S+E+ S V +   +E
Sbjct: 991  VVFEFFPVNKQRKPLNDSCTVTRCGVRLITAVNCNTSIENISPVLSLDPME 1041

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 26/153 (16%)

Query: 24   PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
            PS++  L  L +LNLSGCSKL + PEIS   N++++ + GT I+E+PSSI  L  L +L+
Sbjct: 1322 PSMVD-LESLEVLNLSGCSKLGNFPEISP--NVKELYMGGTMIQEIPSSIKNLVLLEKLD 1378

Query: 84   LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
            L + ++LK LP+S+ KLK LE + L+G                       C SL+     
Sbjct: 1379 LENSRHLKNLPTSIYKLKHLETLNLSG-----------------------CISLERFPDS 1415

Query: 144  FDGLYSLTYLYLTDCAITELPESLGLLSSLEEL 176
               +  L +L L+   I ELP S+  L++L+EL
Sbjct: 1416 SRRMKCLRFLDLSRTDIKELPSSISYLTALDEL 1448

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 106/209 (50%), Gaps = 13/209 (6%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
           P  I  L KL  L+L G ++++ LP  +     + ++ LD   ++ LP  +G L++L  L
Sbjct: 168 PETISQLTKLKRLDL-GDNEIEDLPPYLGYLPGLHELWLDHNQLQRLPPELGLLTKLTYL 226

Query: 83  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 142
           ++ + + L+ LP+ +  L SL ++ L  + +E LP  I  LS L +L L D   L+ L  
Sbjct: 227 DVSENR-LEELPNEISGLVSLTDLDLAQNLLEALPDGIAKLSRLTILKL-DQNRLQRLND 284

Query: 143 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 202
                 ++  L LT+  ++ELP S+G ++ L  L ++RN  E +P  I + + L  L + 
Sbjct: 285 TLGNCENMQELILTENFLSELPASIGQMTKLNNLNVDRNALEYLPLEIGQCANLGVLSL- 343

Query: 203 YCERLQSLPKLPCNLYWLDAQHCTTLESL 231
              R   L KLP  L      +CT L  L
Sbjct: 344 ---RDNKLKKLPPEL-----GNCTVLHVL 364

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 133/310 (42%), Gaps = 67/310 (21%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDG-TAIEELPSSIGCLSRLLELN 83
           S +Q L  L  +NL+    L+ LP +  A  + ++ L    ++ ELPSSI  L  L+ L 
Sbjct: 625 SGVQPLRNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLE 684

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
           +  CK L+ +P+++                  LPS       L VL    C  L++    
Sbjct: 685 MSCCKKLEIIPTNI-----------------NLPS-------LEVLHFRYCTRLQTFP-- 718

Query: 144 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFER------------------ 185
            +   ++  L L   AITE+P S+   S ++E+ +ER   +R                  
Sbjct: 719 -EISTNIRLLNLIGTAITEVPPSVKYWSKIDEICMERAKVKRLVHVPYVLEKLCLRENKE 777

Query: 186 ---IPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVF 242
              IP  +  L +L  + +SYC  + SLPKLP ++  L A +C +L+ L G F +     
Sbjct: 778 LETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVNCESLQILHGHFRNKSIHL 837

Query: 243 FYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFS 302
            ++N   KL ++ +  +  ++   Q    A                  VLPG  +P +FS
Sbjct: 838 NFIN-CLKLGQRAQEKIHRSVYIHQSSYIAD-----------------VLPGEHVPAYFS 879

Query: 303 SQGMGSSITL 312
            +  GSSI +
Sbjct: 880 YRSTGSSIMI 889

Arabidopsis thaliana (taxid: 3702)

>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7 PE=3 SV=3

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 117/227 (51%), Gaps = 22/227 (9%)

Query: 33  LVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL 90
           + +L+ S CS L+ +P+   +    +E++ LD   IEELP  +     L +L++ D  +L
Sbjct: 24  ISVLDYSHCS-LQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALKKLSIPD-NDL 81

Query: 91  KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL 150
             LP+++  L +L+E+ ++ + ++E P  I+C   L +++      +  L   F  L +L
Sbjct: 82  SNLPTTIASLVNLKELDISKNGVQEFPENIKCCKCLTIIE-ASVNPISKLPDGFTQLLNL 140

Query: 151 TYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL---------LV 201
           T LYL D  +  LP + G L+ L  L L  N+ + +P+S+ +L++L  L         L 
Sbjct: 141 TQLYLNDAFLEFLPANFGRLAKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFSELP 200

Query: 202 SYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNEN 248
              +++Q+L +L     W+D      L+ L G++     V+  +++N
Sbjct: 201 EVLDQIQNLREL-----WMD---NNALQVLPGVWKLKMLVYLDMSKN 239

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Bos taurus (taxid: 9913)

>sp|B0W6M9|SUR8_CULQU Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%)

Query: 51  SSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 110
           S A  + K+ +   A+  LP  IG  S+++ELN G   +L  LP  +  L++LE + L+ 
Sbjct: 423 SRAKGLTKLNMKENALTSLPLDIGTWSQMVELNFG-TNSLAKLPDDIHCLQNLEILILSN 481

Query: 111 SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLL 170
           + ++ +P+ I  L  L VLDL + + L+SL      L+ L  L L   A+  LP ++G L
Sbjct: 482 NMLKRIPNTIGNLKKLRVLDLEENR-LESLPSEIGLLHDLQKLILQSNALQSLPRTIGHL 540

Query: 171 SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP---KLPCNLYWLDAQHC 225
           ++L  L +  NN + +PE I  L  L SL ++    L  LP    L  NL  +  ++C
Sbjct: 541 TNLTYLSVGENNLQYLPEEIGTLENLESLYINDNASLVKLPYELALCQNLAIMSIENC 598

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Culex quinquefasciatus (taxid: 7176)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 22/222 (9%)

Query: 33  LVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL 90
           + +L+ S CS L+ +P+   +    +E++ LD   IEELP  +     L +L++ D  +L
Sbjct: 24  ISVLDYSHCS-LQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPD-NDL 81

Query: 91  KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL 150
            +LP+S+  L +L+E+ ++ + ++E P  I+C   L +++      +  L   F  L +L
Sbjct: 82  SSLPTSIASLVNLKELDISKNGVQEFPENIKCCKCLTIIE-ASVNPISKLPDGFTQLLNL 140

Query: 151 TYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL---------LV 201
           T LYL D  +  LP + G L  L  L L  N+ + +P+S+ +L++L  L         L 
Sbjct: 141 TQLYLNDAFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFSELP 200

Query: 202 SYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFF 243
              +++Q+L +L     W+D      L+ L G     K + +
Sbjct: 201 EVLDQIQNLREL-----WMD---NNALQVLPGSIGKLKMLVY 234

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
297794743	1184	predicted protein [Arabidopsis lyrata su	0.909	0.355	0.339	3e-49
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.898	0.282	0.333	1e-48
451798990	1335	TMV resistance protein N-like protein 7	0.874	0.303	0.341	2e-48
359493483	1274	PREDICTED: TMV resistance protein N-like	0.863	0.313	0.342	8e-48
451798988	1219	TMV resistance protein N-like protein 6	0.768	0.292	0.355	6e-46
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.896	0.265	0.322	1e-45
359493487	1162	PREDICTED: TMV resistance protein N-like	0.758	0.302	0.357	3e-45
255563202	1158	leucine-rich repeat containing protein,	0.889	0.355	0.328	6e-45
227438275	1226	disease resistance protein [Brassica rap	0.861	0.325	0.323	2e-44
240256011	1210	TIR-NBS-LRR class disease resistance pro	0.909	0.347	0.350	2e-43

>gi|297794743|ref|XP_002865256.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311091|gb|EFH41515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 161/474 (33%), Positives = 227/474 (47%), Gaps = 53/474 (11%)

Query: 30   LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN 89
            L  L  L LSGCSKL++ P IS   NIE + LDGTAI+ +P SI  L  L  LNL  C  
Sbjct: 595  LKSLKSLILSGCSKLRTFPTISE--NIESLYLDGTAIKRVPESIDSLRYLAVLNLKKCCK 652

Query: 90   LKTLPSSLCKLKSLEEICLTG------------------------SAIEELPSPIECLSA 125
            L+ LPS+LCK+KSL+E+ L+G                        +AI+++P  + C+S 
Sbjct: 653  LRHLPSNLCKMKSLQELILSGCSKLKCFPEIDEDMEHLEILLMDDTAIKQIPIKM-CMSN 711

Query: 126  LCVLDLGDCKSLKSLK---LPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 182
            L +   G  K   S     LPF G   L+ LYLTDC + +LP +   LSS+  L L RNN
Sbjct: 712  LKMFTFGGSKFQGSTGYELLPFSGCSHLSDLYLTDCNLHKLPNNFSCLSSVHSLCLSRNN 771

Query: 183  FERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSG-----LFSS 237
             E +PESI  L  L SL + +C +L SLP LP NL +LDA  C +LE+++      + + 
Sbjct: 772  LEYLPESIKILHHLKSLDLKHCRKLNSLPVLPSNLQYLDAHDCASLETVANPMTHLVLAE 831

Query: 238  YKCVFFYLNENFKLDRKLR-GIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNE 296
                 F   + FKL+R+ +  IV  A    Q++A A  K   + +    L   V  PG++
Sbjct: 832  RVQSTFLFTDCFKLNREAQENIVAHAQLKSQILANACLKRNHKGLVLEPL-ASVSFPGSD 890

Query: 297  IPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLK 356
            +P+WF +Q MG+SI   + P  + ++K  G   C +V+F+D+  +   F   C+ K K +
Sbjct: 891  LPLWFRNQRMGTSIDTHLPPH-WCDSKFRGLSLCVVVSFKDYEDQTSRFSVICKCKFKSE 949

Query: 357  DCDPHVIQRYLGRVN-----------YVEPDHLLLGY---YFFNHQDLNGCWEYNCVPEA 402
              D       LG  N            +  DH+ L Y   +       +G     C   A
Sbjct: 950  SGDCIRFICTLGGWNKLCGSSGHQSRKLGSDHVFLSYNNCFHVKKFREDGNDNNRCCNTA 1009

Query: 403  VQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRKEVEEPH 456
              F F  V       L    V KCG+ L +A D  D     +   N KEV   H
Sbjct: 1010 ASFKF-FVTDDSKRKLGSFEVVKCGMGLLYAPDESDYRLQETLENNLKEVTSIH 1062

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 163/489 (33%), Positives = 246/489 (50%), Gaps = 73/489 (14%)

Query: 24   PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
            PS I  L KL+ LNLSGCS +   P++S+  NI+++ LDGTAI E+PSSI CL  L+EL+
Sbjct: 801  PSSIGDLRKLIYLNLSGCSSITEFPKVSN--NIKELYLDGTAIREIPSSIDCLFELVELH 858

Query: 84   LGDCKNLKTLPSSLCKLKSLEEICLTG------------------------SAIEELPSP 119
            L +CK  + LPSS+C L+ LE + L+G                        + I +LPSP
Sbjct: 859  LRNCKQFEILPSSICTLRKLERLNLSGCLQFRDFPEVLEPMVCLRYLYLEETRITKLPSP 918

Query: 120  IECLSALCVLDLGDCKSLKSLKLPFD--------GLYSLTYLYLTDCAITELPESLGLLS 171
            I  L  L  L++G+CK L  ++   D         L  L  L L  C I+ +P+SLG LS
Sbjct: 919  IGNLKGLACLEVGNCKYLNDIECFVDLQLSERWVDLDYLRKLNLDGCHISVVPDSLGCLS 978

Query: 172  SLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL 231
            SLE L L  NNF  IP SI +LS+L  L +  C+RL+SLP+LP  L  LDA +C +L  L
Sbjct: 979  SLEVLDLSGNNFSTIPLSINKLSELQYLGLRNCKRLESLPELPPRLSKLDADNCESLNYL 1038

Query: 232  SGLFSSY--KCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQG- 288
                S+     +F ++  N     ++  I+  AL+  +L  T R  ++ +      L+G 
Sbjct: 1039 GSSSSTVVKGNIFEFIFTNCLSLCRINQILPYALKKFRLY-TKRLHQLTD-----VLEGA 1092

Query: 289  -HVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKF 347
                LPG   P W S Q  GS++T ++    ++N+K  GF  CA++AF   H    S + 
Sbjct: 1093 CSFFLPGGVSPQWLSHQSWGSTVTCQLSSH-WANSKFLGFSLCAVIAF---HSFGHSLQV 1148

Query: 348  YCEFKIKLKDCDPHVIQRYLG---RVNYVEPDHLLLGY---------YFFNHQDLNGCWE 395
             C +    +  D H +  YL        ++ +H+L+G+         Y F+        E
Sbjct: 1149 KCTYHFSNEHGDSHDLYCYLHGWYDEKRIDSEHILVGFDPCLVAKEDYMFS--------E 1200

Query: 396  YNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASD--SMDSMEDPSKVFNRKEVE 453
            Y+ V  +V+F  + + G+    LD C V KCG+ L +  +   +D   DP +   + +  
Sbjct: 1201 YSEV--SVEFQLEDINGN-LLPLDLCQVHKCGVRLLYEDEIHCIDYYHDPLEAMFQCKRA 1257

Query: 454  EPHPKRLKY 462
                KR ++
Sbjct: 1258 SLQGKRARF 1266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 162/475 (34%), Positives = 230/475 (48%), Gaps = 70/475 (14%)

Query: 24   PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL---LDGTAIEELPSSIGCLSRLL 80
            P  I  L  L  L LS C++LK LPEI    N+E ++   LDG+ I ELPSSIGCL+ L+
Sbjct: 788  PRSIFKLKSLKTLILSNCTRLKKLPEIQE--NMESLMELFLDGSGIIELPSSIGCLNGLV 845

Query: 81   ELNLGDCKNLKTLPSSLCKLKSLEEI-------------------CLT-----GSAIEEL 116
             LNL +CK L +LP S C+L SL  +                   CLT     GS ++E+
Sbjct: 846  FLNLKNCKKLASLPQSFCELTSLRTLTLCGCSELKDLPDNLGSLQCLTELNADGSGVQEV 905

Query: 117  PSPIECLSALCVLDLGDCKSLKS----------------LKLP-FDGLYSLTYLYLTDCA 159
            P  I  L+ L +L L  CK  +S                L+LP F GLYSL  L L  C 
Sbjct: 906  PPSITLLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEELRLPSFSGLYSLRVLILQRCN 965

Query: 160  ITE--LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNL 217
            ++E  LP  LG + SLE L L RN+F  IP S+  LS+L SL + YC+ LQSLP+LP ++
Sbjct: 966  LSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSV 1025

Query: 218  YWLDAQHCTTLESLSGLFSSYKC-----VFFYLNENFKL-DRKLRGIVEDALQNIQLMAT 271
              L+A  CT+LE+ +   S+Y       + F     F+L + +   IV   L+ IQLM++
Sbjct: 1026 ESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSS 1085

Query: 272  -ARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFC 330
              ++      I  P  + + ++PGN IP WF  Q +G S+ +++ P  + N K+ G  FC
Sbjct: 1086 IPKFLVPDRGIPTPHNEYNALVPGNRIPEWFRHQSVGCSVNIEL-PQHWYNTKLMGLAFC 1144

Query: 331  AIVAFR-----DHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFF 385
            A + F+     +      SF   C       +   H +        ++E DH L  Y   
Sbjct: 1145 AALNFKGAMDGNPGTEPSSFGLVCYLNDCFVETGLHSLYTPPEGSKFIESDHTLFEYISL 1204

Query: 386  NHQDL-NGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDS 439
               ++  G W        V  +   + GS+ E      VKKCGI L +  D  D 
Sbjct: 1205 ARLEICLGNWFRKLSDNVVASF--ALTGSDGE------VKKCGIRLVYEEDEKDG 1251

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 231/470 (49%), Gaps = 70/470 (14%)

Query: 29   HLNKLVILNLSGCSKLKSLPEISSAGNIE---KILLDGTAIEELPSSIGCLSRLLELNLG 85
            H+  L IL LSGCSKLK  PE+   GN+E    + L+GTAI+ LP SI  L+ L  LNL 
Sbjct: 722  HMESLQILTLSGCSKLKKFPEVQ--GNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLK 779

Query: 86   DCKNLKTLPSSLCKLKSLEEI-------------------CLT-----GSAIEELPSPIE 121
            +CK+L++LP S+ KLKSL+ +                   CLT     GS ++E+P  I 
Sbjct: 780  ECKSLESLPRSIFKLKSLKTLILSGCSELKDLPDNLGSLQCLTELNADGSGVQEVPPSIT 839

Query: 122  CLSALCVLDLGDCKSLKS----------------LKLP-FDGLYSLTYLYLTDCAITE-- 162
             L+ L +L L  CK  +S                L+LP F GLYSL  L L  C ++E  
Sbjct: 840  LLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEELRLPSFSGLYSLRVLILQRCNLSEGA 899

Query: 163  LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDA 222
            LP  LG + SLE L L RN+F  IP S+  LS+L SL + YC+ LQSLP+LP ++  L+A
Sbjct: 900  LPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNA 959

Query: 223  QHCTTLESLSGLFSSYKC-----VFFYLNENFKL-DRKLRGIVEDALQNIQLMAT-ARWK 275
              CT+LE+ +   S+Y       + F     F+L + +   IV   L+ IQLM++  ++ 
Sbjct: 960  HSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSSIPKFL 1019

Query: 276  EIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAF 335
                 I  P  + + ++PGN IP WF  Q +G S+ +++ P  + N K+ G  FCA + F
Sbjct: 1020 VPDRGIPTPHNEYNALVPGNRIPEWFRHQSVGCSVNIEL-PQHWYNTKLMGLAFCAALNF 1078

Query: 336  R-----DHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDL 390
            +     +      SF   C       +   H +        ++E DH L  Y      ++
Sbjct: 1079 KGAMDGNPGTEPSSFGLVCYLNDCFVETGLHSLYTPPEGSKFIESDHTLFEYISLARLEI 1138

Query: 391  -NGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDS 439
              G W        V  +   + GS+ E      VKKCGI L +  D  D 
Sbjct: 1139 CLGNWFRKLSDNVVASF--ALTGSDGE------VKKCGIRLVYEEDEKDG 1180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 206/416 (49%), Gaps = 60/416 (14%)

Query: 24   PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL---LDGTAIEELPSSIGCLSRLL 80
            P  I  L  L  L LS C++LK LPEI    N+E ++   LDG+ I ELPSSIGCL+ L+
Sbjct: 780  PRSIFKLKSLKTLILSNCTRLKKLPEIQE--NMESLMELFLDGSGIIELPSSIGCLNGLV 837

Query: 81   ELNLGDCKNLKTLPSSLCKLKSLEEICL------------------------TGSAIEEL 116
             LNL +CK L +LP S C+L SL  + L                         GS I+E+
Sbjct: 838  FLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEV 897

Query: 117  PSPIECLSALCVLDLGDCKSLKS----------------LKLP-FDGLYSLTYLYLTDCA 159
            P  I  L+ L  L L  CK   S                L+LP F GLYSL  L L  C 
Sbjct: 898  PPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELRLPSFSGLYSLRVLILQRCN 957

Query: 160  ITE--LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNL 217
            ++E  LP  LG + SLE L L RN+F  IP S+  LS+L SL + YC+ LQSLP+LP ++
Sbjct: 958  LSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSV 1017

Query: 218  YWLDAQHCTTLESL---SGLFSSYKC--VFFYLNENFKL-DRKLRGIVEDALQNIQLMAT 271
              L+A  CT+LE+    SG ++S K   + F     F+L + +   IV   L+ IQLM++
Sbjct: 1018 ESLNAHSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSS 1077

Query: 272  ARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCA 331
                 +   I  P  + + ++PG+ IP WF  Q +G S+ +++ P  + N K+ G  FCA
Sbjct: 1078 IPKFLVPWGIPTPHNEYNALVPGSRIPEWFRHQSVGCSVNIELPPHWY-NTKLMGLAFCA 1136

Query: 332  IVAFRDH-----HVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGY 382
             + F+            SF   C       +   H +   L    ++E DH L  Y
Sbjct: 1137 ALNFKGAMDGYPGTEPSSFGLVCYLNDCFVETGLHSLYTPLEGSKFIESDHTLFEY 1192

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 156/484 (32%), Positives = 239/484 (49%), Gaps = 69/484 (14%)

Query: 5    GKLNQII---MAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILL 61
            G L ++I   +  CN     P  S +  L  L  L+LSGCS +   P++S+   I+++ L
Sbjct: 805  GDLRELIYLDLGGCNRLKNLP--SAVSKLVCLEKLDLSGCSNITEFPKVSNT--IKELYL 860

Query: 62   DGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG----------- 110
            +GTAI E+PSSI CL  L EL+L +CK  + LPSS+CKL+ L+ + L+G           
Sbjct: 861  NGTAIREIPSSIECLFELAELHLRNCKQFEILPSSICKLRKLQRLNLSGCVQFRDFPEVL 920

Query: 111  -------------SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD-------GLYSL 150
                         + I +LPSPI  L  L  L++G+C+ L+ ++   D        L  L
Sbjct: 921  EPMVCLRYLYLEQTRITKLPSPIGNLKGLACLEVGNCQHLRDIECIVDLQLPERCKLDCL 980

Query: 151  TYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210
              L L  C I E+P+SLGL+SSLE L L  NNF  IP SI +L +L  L +  C  L+SL
Sbjct: 981  RKLNLDGCQIWEVPDSLGLVSSLEVLDLSGNNFRSIPISINKLFELQYLGLRNCRNLESL 1040

Query: 211  PKLPCNLYWLDAQHCTTLESLSGLFSSYKC-VFFYLNENFKLDRKLRGIVEDALQNIQLM 269
            P+LP  L  LDA +C +L ++S   ++ +  +F ++  N K  R++  I+E +L   QL 
Sbjct: 1041 PELPPRLSKLDADNCWSLRTVSCSSTAVEGNIFEFIFTNCKRLRRINQILEYSLLKFQLY 1100

Query: 270  ATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVF 329
                + ++ +    P       LPG+  P WFS Q  GS +T ++    +++ K  GF  
Sbjct: 1101 TKRLYHQLPD---VPEEACSFCLPGDMTPEWFSHQSWGSIVTFQLSSH-WAHTKFLGFSL 1156

Query: 330  CAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYL----GRVNY-----------VE 374
            CA++AF   H    S +  C +    +  D H +  YL    G   Y           + 
Sbjct: 1157 CAVIAF---HSFSHSLQVKCTYHFHNEHGDSHDLYCYLHVCYGNDLYCYLHDWYGEKRIN 1213

Query: 375  PDHLLLGY---YFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLF 431
              H+ +G          D+    +Y+ V  +V+F  + + G     LD C V +CG+ L 
Sbjct: 1214 SKHIFVGLDPCLVAKENDMFS--KYSEV--SVEFQLEDMNGY-LLPLDLCQVVECGVRLL 1268

Query: 432  HASD 435
            HA+D
Sbjct: 1269 HAND 1272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 207/411 (50%), Gaps = 60/411 (14%)

Query: 29   HLNKLVILNLSGCSKLKSLPEISSAGNIE---KILLDGTAIEELPSSIGCLSRLLELNLG 85
            H+  L IL LSGCSKLK  PE+   GN+E    + L+GTAI+ LP SI  L+ L  LNL 
Sbjct: 728  HMESLQILTLSGCSKLKKFPEVQ--GNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLK 785

Query: 86   DCKNLKTLPSSLCKLKSLEEICL------------------------TGSAIEELPSPIE 121
            +CK+L++LP S+ KLKSL+ + L                         GS I+E+P  I 
Sbjct: 786  ECKSLESLPRSIFKLKSLKTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEVPPSIT 845

Query: 122  CLSALCVLDLGDCKSLKS----------------LKLP-FDGLYSLTYLYLTDCAITE-- 162
             L+ L  L L  CK   S                L+LP F GLYSL  L L  C ++E  
Sbjct: 846  LLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELRLPSFSGLYSLRVLILQRCNLSEGA 905

Query: 163  LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDA 222
            LP  LG + SLE L L RN+F  IP S+  LS+L SL + YC+ LQSLP+LP ++  L+A
Sbjct: 906  LPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNA 965

Query: 223  QHCTTLESL---SGLFSSYKC--VFFYLNENFKL-DRKLRGIVEDALQNIQLMATARWKE 276
              CT+LE+    SG ++S K   + F     F+L + +   IV   L+ IQLM++     
Sbjct: 966  HSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSSIPKFL 1025

Query: 277  IREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFR 336
            +   I  P  + + ++PG+ IP WF  Q +G S+ +++ P  + N K+ G  FCA + F+
Sbjct: 1026 VPWGIPTPHNEYNALVPGSRIPEWFRHQSVGCSVNIELPPHWY-NTKLMGLAFCAALNFK 1084

Query: 337  DH-----HVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGY 382
                        SF   C       +   H +   L    ++E DH L  Y
Sbjct: 1085 GAMDGYPGTEPSSFGLVCYLNDCFVETGLHSLYTPLEGSKFIESDHTLFEY 1135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 158/481 (32%), Positives = 232/481 (48%), Gaps = 69/481 (14%)

Query: 24   PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
            P+ I  L  L  L+LSGCS LK  PE+S   NI  + L+ TAI+E+P SI  LS+L+ LN
Sbjct: 694  PTTID-LQSLETLDLSGCSNLKIFPEVSR--NIRYLYLNETAIQEVPLSIEHLSKLVVLN 750

Query: 84   LGDCKNLKTLPSSLCKLKSLEEICLTG------------------------SAIEELPSP 119
            + +C  L+ +PS++ KLKSL  + L+G                        +A+  LP  
Sbjct: 751  MKNCNELECIPSTIFKLKSLGVLILSGCKKLESFPEILETTNHLQHLSLDETAMVNLPDT 810

Query: 120  IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 179
               L AL +L+  DC  L  L      L SL  L    C ++ LP  L  LSS+ EL L 
Sbjct: 811  FCNLKALNMLNFSDCSKLGKLPKNMKNLKSLAELRAGGCNLSTLPADLKYLSSIVELNLS 870

Query: 180  RNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL----- 234
             +NF+ +P  I +LSKL  + V+ C+RLQSLP+LP  + +L+A+ C +L S+SGL     
Sbjct: 871  GSNFDTMPAGINQLSKLRWINVTGCKRLQSLPELPPRIRYLNARDCRSLVSISGLKQLFE 930

Query: 235  ---FSSYKCVFFYLNENFKLDR-KLRGIVEDALQNIQLMATARWKEIREKISYPALQGHV 290
                +S     F     FKLD+     I+  A   IQ  A  R    RE   Y       
Sbjct: 931  LGCSNSLDDETFVFTNCFKLDQDNWADILASAQLKIQHFAMGRKHYDRE--LYDETFICF 988

Query: 291  VLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCE 350
              PG EIP WF+ + +GSS+T++  P  + N++  GF  C +VAF D        +F CE
Sbjct: 989  TYPGTEIPEWFADKSIGSSVTIQHLPPDWLNHRFLGFSVCLVVAFDD--------RFLCE 1040

Query: 351  FKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKV 410
            +   +  C  +    Y G  N++     L  + +F   D + C   +C   AV       
Sbjct: 1041 YPRGVVACKCNFQNSYGGCNNHI---FTLNSWKYFPAMDQSMC---SCGMIAVGM----- 1089

Query: 411  LGSETETLDCCGVKKCGIHLFHASDSMDSMED--PSKVFNRK------EVEEPHPKRLKY 462
                 E  +   V+KCG+ L ++ D   +  +  P++V  ++      E EEPH K++K 
Sbjct: 1090 ----VENANFPEVEKCGVLLLYSKDEESNQMELVPAEVTKKRSGSSAEEKEEPHLKKMKE 1145

Query: 463  L 463
            L
Sbjct: 1146 L 1146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438275|gb|ACP30627.1| disease resistance protein [Brassica rapa subsp. pekinensis]

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 217/460 (47%), Gaps = 61/460 (13%)

Query: 30   LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN 89
            L  L  + LSGCSKLK  P IS   NIE + LDGTA++ +P SI  L +L  LNL  C  
Sbjct: 704  LKSLKFVILSGCSKLKKFPTISE--NIESLYLDGTAVKRVPESIENLQKLTVLNLKKCSR 761

Query: 90   LKTLPSSLC------------------------KLKSLEEICLTGSAIEELPSPIECLSA 125
            L  LP++LC                         ++SLE + +  +AI++ P  ++ +S 
Sbjct: 762  LMHLPTTLCKLKSLKELLLSGCSKLESFPDINEDMESLEILLMDDTAIKQTPRKMD-MSN 820

Query: 126  LCVLDLGDCK--SLKSLKL-PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 182
            L +   G  K   L  L+L PF G   L+ +YLTDC + +LP+S   LS L+ L L RNN
Sbjct: 821  LKLFSFGGSKVHDLTCLELLPFSGCSRLSDMYLTDCNLYKLPDSFSCLSLLQTLCLSRNN 880

Query: 183  FERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSG-----LFSS 237
             + +P SI +L  L SL + +C++L SLP LP NL +LDA  C +LE+++      + + 
Sbjct: 881  IKNLPGSIKKLHHLKSLYLKHCQQLVSLPVLPSNLQYLDAHGCISLETVAKPMTLLVVAE 940

Query: 238  YKCVFFYLNENFKLDRKLR-GIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNE 296
                 F   + FKL+R  +  IV       Q++     +   + +    L      PGN+
Sbjct: 941  RNQSTFVFTDCFKLNRDAQESIVAHTQLKSQILGNGSLQRNHKGLVSEPL-ASASFPGND 999

Query: 297  IPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLK 356
            +P+WF  Q MGSS+   + P  + ++K  G   C +V+F+D+  +   F   C+ K + +
Sbjct: 1000 LPLWFRHQRMGSSMETHLPPH-WCDDKFIGLSLCVVVSFKDYVDKTNRFSVICKCKFRNE 1058

Query: 357  DCDPHVIQRYLG---------RVNYVEP-----DHLLLGYYFFNH----QDLNGCWEYNC 398
            D D       LG              EP     DH+ + Y    H     DLN      C
Sbjct: 1059 DGDCISFTCNLGGWKEQCGSSSSREEEPRKLTSDHVFISYNNCFHAKKSHDLN-----RC 1113

Query: 399  VPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMD 438
                  F F    G     LDCC V KCG+ L +A D  D
Sbjct: 1114 CNTTASFKFFVTDGVSKRKLDCCEVVKCGMSLLYAPDEND 1153

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256011|ref|NP_193686.5| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|332658792|gb|AEE84192.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 171/488 (35%), Positives = 237/488 (48%), Gaps = 67/488 (13%)

Query: 6    KLNQII---MAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLD 62
            ++N++I   +  C      P    I+ L  L+   LSGC KLK    IS +  IE + L+
Sbjct: 678  QMNELIYLNLRDCTSLESLPKGFKIKSLKTLI---LSGCLKLKDFHIISES--IESLHLE 732

Query: 63   GTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELP---S 118
            GTAIE +   I  L  L+ LNL +C+ LK LP+ L KLKSL+E+ L+G SA+E LP    
Sbjct: 733  GTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLPPIKE 792

Query: 119  PIECLSAL--------------CVLDLGDCK--------SLKSLKLPFDGLYSLTYLYLT 156
             +ECL  L              C+ +L  C         S   + LPF G   L+ LYLT
Sbjct: 793  KMECLEILLMDGTSIKQTPEMSCLSNLKICSFCRPVIDDSTGLVVLPFSGNSFLSDLYLT 852

Query: 157  DCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCN 216
            +C I +LP+    L SL  L L RNN E +PESI +L  L  L + +C RL+SLP LP N
Sbjct: 853  NCNIDKLPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKSLPLLPSN 912

Query: 217  LYWLDAQHCTTLESLSG-----LFSSYKCVFFYLNENFKLDRKLR-GIVEDALQNIQLMA 270
            L +LDA  C +LE++S      L +      F   + FKL++  +  IV  A    QL+A
Sbjct: 913  LQYLDAHGCGSLENVSKPLTIPLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQLKSQLLA 972

Query: 271  -TARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVF 329
             T+R    +  +  P +   V  PG++IP WFS Q MGS I   + P  + N+K  G   
Sbjct: 973  RTSRHHNHKGLLLDPLVA--VCFPGHDIPSWFSHQKMGSLIETDLLPH-WCNSKFIGASL 1029

Query: 330  CAIVAFRD---HHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYV------EP----- 375
            C +V F+D   HH    S +  C+ K K ++         LG  N        EP     
Sbjct: 1030 CVVVTFKDHEGHHANRLSVR--CKSKFKSQNGQFISFSFCLGGWNESCGSSCHEPRKLGS 1087

Query: 376  DHLLLGYYFFNHQDLNGCWEYN----CVPEAVQFYFKKVLGSETE-TLDCCGVKKCGIHL 430
            DH+ + Y   N        E N    C P +  F F   L  ETE  L+CC + +CG++ 
Sbjct: 1088 DHVFISYNNCNVPVFKWSEETNEGNRCHPTSASFEF--YLTDETERKLECCEILRCGMNF 1145

Query: 431  FHASDSMD 438
             +A D  D
Sbjct: 1146 LYARDEND 1153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.909	0.333	0.289	4.3e-34
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.835	0.328	0.295	1.4e-28
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.671	0.257	0.315	3e-28
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.585	0.209	0.298	4.7e-25
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.911	0.346	0.273	4.5e-24
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.237	0.094	0.406	1.7e-22
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.883	0.336	0.268	9.6e-22
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.881	0.341	0.248	8.9e-20
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.889	0.334	0.244	1.6e-19
TAIR|locus:2146253	1210	AT5G18370 [Arabidopsis thalian	0.276	0.105	0.378	7.3e-19

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 4.3e-34, P = 4.3e-34
 Identities = 133/460 (28%), Positives = 217/460 (47%)

Query:     1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL 60
             +Q+   L  + +  C      P+ +L+  L  L+   LS CS+ K    I  A N+E++ 
Sbjct:   705 LQNMESLMFLNLRGCTSLESLPDITLVG-LRTLI---LSNCSRFKEFKLI--AKNLEELY 758

Query:    61 LDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPSP 119
             LDGTAI+ELPS+IG L +L+ L L DCKNL +LP S+  LK+++EI L+G S++E  P  
Sbjct:   759 LDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKAIQEIILSGCSSLESFPEV 818

Query:   120 IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLY-LT----DCAITXXXXXXXXXXXXX 174
              + L  L  L L D  ++K  K+P D L+ L+    LT    +C +              
Sbjct:   819 NQNLKHLKTLLL-DGTAIK--KIP-DILHHLSPDQGLTSSQSNCHLCEWPRGIYGLSSVR 874

Query:   175 XXXXXRNNFERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL 234
                   N F  +P SI            +C+ L S+P LP NL WLDA  C +LE++S L
Sbjct:   875 RLSLSSNEFRILPRSIGYLYHLNWLDLKHCKNLVSVPMLPPNLQWLDAHGCISLETISIL 934

Query:   235 FSSYKCVFFYLNENFKLDR--KLRGIVEDALQN-----IQLMATARWKEIREKISYPALQ 287
                      +L+  F      KL  + E+++++     IQLM+ A  +   + ++   L 
Sbjct:   935 SDPLLAETEHLHSTFIFTNCTKLYKVEENSIESYPRKKIQLMSNALAR-YEKGLALDVLI 993

Query:   288 GHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKF 347
             G +  PG ++P WF+ + +G  +   + P  ++   + G   CA+V+F+D+  ++     
Sbjct:   994 G-ICFPGWQVPGWFNHRTVGLELKQNL-PRHWNAGGLAGIALCAVVSFKDYISKNNRLLV 1051

Query:   348 YCEFKIKLKDCDPHVIQRYLG----RVNY----VEPDHLLLGYY-FFNHQDLNGCWEYNC 398
              C  + K +D         LG      +Y    ++ DH+ +GY  + N    +      C
Sbjct:  1052 TCSGEFKKEDKTLFQFSCILGGWTEHGSYEAREIKSDHVFIGYTSWLNFMKSDD--SIGC 1109

Query:   399 VPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMD 438
             V       F+   G  T  +  C V KCG  L ++  ++D
Sbjct:  1110 VATEASLRFQVTDG--TREVTNCTVVKCGFSLIYSHTNVD 1147

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.4e-28, P = 1.4e-28
 Identities = 127/430 (29%), Positives = 198/430 (46%)

Query:    12 MAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS 71
             M  C      P  +LI  L  L++ N   CS ++    IS   N+E + LDGTAI +LP+
Sbjct:   706 MRGCTSLRVLPRMNLIS-LKTLILTN---CSSIQKFQVISD--NLETLHLDGTAIGKLPT 759

Query:    72 SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECLSALCVLD 130
              +  L +L+ LNL DCK L  +P  L KLK+L+E+ L+G S ++    PIE +  L +L 
Sbjct:   760 DMVKLQKLIVLNLKDCKMLGAVPEFLGKLKALQELVLSGCSKLKTFSVPIETMKCLQILL 819

Query:   131 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAITXXXXXXXXXXXXXXXXXXRNNF-ERIPES 189
             L D  +LK  ++P   L       + D  +                   RNN    +   
Sbjct:   820 L-DGTALK--EMP--KLLRFNSSRVED--LPELRRGINGLSSLRRLCLSRNNMISNLQID 872

Query:   190 IIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHCTTLESLSG------LFSSYKCVFF 243
             I +          YC+ L S+P LP NL  LDA  C  L++++       L    +  F 
Sbjct:   873 INQLYHLKWLDLKYCKNLTSIPLLPPNLEILDAHGCEKLKTVASPMALLKLMEQVQSKFI 932

Query:   244 YLNENFKLDRKLRG-IVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFS 302
             + N N  L++  +  I   A +  QL A   +KE    +S  AL      PG+++P WF+
Sbjct:   933 FTNCN-NLEQVAKNSITSYAQRKSQLDARRCYKE--GGVS-EALF-IACFPGSDVPSWFN 987

Query:   303 SQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRD--HHVRDWSFKFYCEFKIKLKDCDP 360
              Q  GS++ LK+ P  + +N++     CA+V F D    +  +S +  CEFK +L  C  
Sbjct:   988 YQTFGSALRLKLPPH-WCDNRLSTIALCAVVTFPDTQDEINRFSIECTCEFKNELGTCIR 1046

Query:   361 HVIQRYLG----RVNYVEPDHLLLGYYFFNH--QDLNGCW---EYN-CVPEAVQFYFKKV 410
                   LG        ++ DH+ +GY   +H  + L G     E++ CVP      F+ +
Sbjct:  1047 FSCT--LGGSWIESRKIDSDHVFIGYTSSSHITKHLEGSLKLKEHDKCVPTEASIEFEVI 1104

Query:   411 LGSETETLDC 420
              G+  E ++C
Sbjct:  1105 DGAG-EIVNC 1113

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 3.0e-28, P = 3.0e-28
 Identities = 105/333 (31%), Positives = 159/333 (47%)

Query:    36 LNLSGCSKLKSLPEISSAGNIEKILLDGTA-IEELPSSIGCLSRLLELNLGDCKNLKTLP 94
             L+L G +  + +  I S  ++  + L     ++ LP+ +  L  L EL L  C  L++LP
Sbjct:   729 LHLEGTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLP 788

Query:    95 SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK-----SLKSLKLPFDGLYS 149
                 K++ LE + + G++I++ P  + CLS L +     C+     S   + LPF G   
Sbjct:   789 PIKEKMECLEILLMDGTSIKQTPE-MSCLSNLKICSF--CRPVIDDSTGLVVLPFSGNSF 845

Query:   150 LTYLYLTDCAITXXXXXXXXXXXXXXXXXXRNNFERIPESIIRXXXXXXXXXXYCERLQS 209
             L+ LYLT+C I                   RNN E +PESI +          +C RL+S
Sbjct:   846 LSDLYLTNCNIDKLPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKS 905

Query:   210 LPKLPCNLYWLDAQHCTTLESLSG-----LFSSYKCVFFYLNENFKLDR-KLRGIVEDAL 263
             LP LP NL +LDA  C +LE++S      L +      F   + FKL++ +   IV  A 
Sbjct:   906 LPLLPSNLQYLDAHGCGSLENVSKPLTIPLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQ 965

Query:   264 QNIQLMA-TARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNN 322
                QL+A T+R    +  +  P +   V  PG++IP WFS Q MGS I   + P  + N+
Sbjct:   966 LKSQLLARTSRHHNHKGLLLDPLVA--VCFPGHDIPSWFSHQKMGSLIETDLLPH-WCNS 1022

Query:   323 KVFGFVFCAIVAFRDH---HVRDWSFKFYCEFK 352
             K  G   C +V F+DH   H    S +   +FK
Sbjct:  1023 KFIGASLCVVVTFKDHEGHHANRLSVRCKSKFK 1055

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
 Identities = 90/302 (29%), Positives = 144/302 (47%)

Query:    24 PSLIQHLNKLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAI-EELPSSIGC--LSRL 79
             P+ I +L++L  L++S   +L SLP  IS   ++EK+ L G ++ E  P  I C  +S L
Sbjct:   824 PARICNLSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLESFPLEI-CQTMSCL 882

Query:    80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC----- 134
                +L D  ++K LP ++  L +LE +  + + I   P  I  L+ L VL +G+      
Sbjct:   883 RWFDL-DRTSIKELPENIGNLVALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFFTPE 941

Query:   135 KSLKSLKLPFDGLYSLTYLYLTDCAITXXXXXXXXXXXXXXXXXXRNNFERIPESIIRXX 194
               L SL  P      L  L L++  +T                   NNFE IP SI R  
Sbjct:   942 GLLHSLCPPLSRFDDLRALSLSNMNMTEIPNSIGNLWNLLELDLSGNNFEFIPASIKRLT 1001

Query:   195 XXXXXXXXYCERLQSLP-KLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNEN-FKLD 252
                      C+RLQ+LP +LP  L ++    CT+L S+SG F+ Y C+   +  N +KLD
Sbjct:  1002 RLNRLNLNNCQRLQALPDELPRGLLYIYIHSCTSLVSISGCFNQY-CLRKLVASNCYKLD 1060

Query:   253 RKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITL 312
             +  + ++    +N++L +              A   H   PG++IP  F+ Q MG S+ +
Sbjct:  1061 QAAQILIH---RNLKLES--------------AKPEHSYFPGSDIPTCFNHQVMGPSLNI 1103

Query:   313 KM 314
             ++
Sbjct:  1104 QL 1105

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 4.5e-24, P = 4.5e-24
 Identities = 126/460 (27%), Positives = 198/460 (43%)

Query:     7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTA 65
             L  +I++ C+   K P   LI   N  V+L L G + +KSLPE I +   +  + L    
Sbjct:   715 LQTLILSGCSSLKKFP---LISE-NVEVLL-LDG-TVIKSLPESIQTFRRLALLNLKNCK 768

Query:    66 -IEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLS 124
              ++ L S +  L  L EL L  C  L+  P     ++SLE + +  ++I E+P  +  LS
Sbjct:   769 KLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMPKMMH-LS 827

Query:   125 ALCVLDLGDCKSLKSLKL----PFDGLYSLTYLYLTDCAITXXXXXXXXXXXXXXXXXXR 180
              +    L    S  S+ +    P  G   LT LYL+ C++                    
Sbjct:   828 NIKTFSLCGTSSHVSVSMFFMPPTLGCSRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSG 887

Query:   181 NNFERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKC 240
             NN E +PES  +          +C+ L+SLP LP NL +LDA  C +LE+L+   +    
Sbjct:   888 NNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETLANPLTPLTV 947

Query:   241 -----VFFYLNENFKLDRKLRG-IVEDALQNIQLMATARWKEIREKISYPALQGHVVLPG 294
                    F  +  +KL++  +  +V  A    QLMA A  K          L G +  P 
Sbjct:   948 GERIHSMFIFSNCYKLNQDAQASLVGHARIKSQLMANASAKRYYRGFVPEPLVG-ICYPA 1006

Query:   295 NEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIK 354
              EIP WF  Q +G S+ + + P     N V G     +V+F+D+      F   C    +
Sbjct:  1007 TEIPSWFCHQRLGRSLEIPLPPHWCDINFV-GLALSVVVSFKDYEDSAKRFSVKCCGNFE 1065

Query:   355 LKDCD----PHVIQRY---LGRVNY----VEPDHLLLGYYF-FNHQDLNGCWEYN-CVPE 401
              KD         +  +    G +++    +  DH+ +GY   F  ++++G  E N C   
Sbjct:  1066 NKDSSFTRFDFTLAGWNEPCGSLSHESRKLTSDHVFMGYNSCFLVKNVHG--ESNSCCYT 1123

Query:   402 AVQFYFKKVLGSET-ETLDCCGVKKCGIHLFHASDSMDSM 440
                F F  V   ET + ++ C V KCG+ L +  +  D M
Sbjct:  1124 KASFEFY-VTDDETRKKIETCEVIKCGMSLMYVPEDDDCM 1162

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
 Identities = 48/118 (40%), Positives = 74/118 (62%)

Query:    30 LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN 89
             ++ L IL LS CSKL+    IS   N+E++ LDGTAI+ LP + G L+RL+ LN+  C  
Sbjct:   769 VSSLKILILSDCSKLEEFEVISE--NLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTE 826

Query:    90 LKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECLSALCVLDLGDCK-----SLKSLK 141
             L++LP  L K K+L+E+ L+G S +E +P+ ++ +  L +L L   +      +KSLK
Sbjct:   827 LESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIPKIKSLK 884

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 9.6e-22, P = 9.6e-22
 Identities = 121/451 (26%), Positives = 190/451 (42%)

Query:     6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDG-T 64
             KL ++ +  C      P+   ++ +  L  LNL GC+ L+SLPE++   +++ + L G +
Sbjct:   684 KLQRLNLEGCTTLKAFPHD--MKKMKMLAFLNLKGCTSLESLPEMNLI-SLKTLTLSGCS 740

Query:    65 AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECL 123
               +E P     +S  +E    D   +  LP ++ KL+ L  + +     +EE+P  +  L
Sbjct:   741 TFKEFP----LISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGEL 796

Query:   124 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITXXXXXXXXXXXXXXXXXXRN-N 182
              AL  L L DC +LK    P   +  L  L L   AI                   RN  
Sbjct:   797 KALQELILSDCLNLKIF--PEIDISFLNILLLDGTAIEVMPQLPSVQYLCLS----RNAK 850

Query:   183 FERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYK--- 239
                +P  I +          YC  L S+P+ P NL  LDA  C++L+++S   +      
Sbjct:   851 ISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTE 910

Query:   240 ---CVFFYLN-ENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGN 295
                  F + N EN +   K   I   A +  QL++ AR K     +   +L      PG 
Sbjct:   911 QNHSTFIFTNCENLEQAAK-EEITSYAQRKCQLLSYAR-KRYNGGLVSESLFS-TCFPGC 967

Query:   296 EIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKL 355
             E+P WF  + +GS + +K+ P  + + K+ G   CA+V+  D   +       C FK+K 
Sbjct:   968 EVPSWFCHETVGSELEVKLLPH-WHDKKLAGIALCAVVSCLDPQDQVSRLSVTCTFKVKD 1026

Query:   356 KD-------CDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYN----CVPEAVQ 404
             +D       C      R+ G  + +E DH+ +GY    H     C E      C P    
Sbjct:  1027 EDKSWVAYTCPVGSWTRHGGGKDKIELDHVFIGYTSCPHTIK--CHEEGNSDECNPTEAS 1084

Query:   405 FYFKKVLGSETETLDCCGVKKCGIHLFHASD 435
               F  V G  +E      V KCG+ L +A D
Sbjct:  1085 LKFT-VTGGTSEN-GKYKVLKCGLSLVYAKD 1113

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 8.9e-20, P = 8.9e-20
 Identities = 112/450 (24%), Positives = 189/450 (42%)

Query:     1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL 60
             MQ    L  + +  C      P   L + L  L+   LS C   +  P IS    +E + 
Sbjct:   724 MQEMESLIYLNLGGCTRLVSLPEFKL-KSLKTLI---LSHCKNFEQFPVISEC--LEALY 777

Query:    61 LDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPSP 119
             L GTAI+ +P+SI  L +L+ L+L DC+ L +LP  L  L+SL+E+ L+G S ++  P  
Sbjct:   778 LQGTAIKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELILSGCSKLKFFPEL 837

Query:   120 IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITXXXXXXXXXXXXXXXXXX 179
              E + ++ +L L D  ++K + +    + S  +  + +  +                   
Sbjct:   838 KETMKSIKILLL-DGTAIKQMPILLQCIQSQGHS-VANKTLPNSLSDYYLPSSLLSLCLS 895

Query:   180 RNNFERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHCTTLES----LSGLF 235
              N+ E +  +I +           C++L+S+  LP NL  LDA  C +LE     L+ L 
Sbjct:   896 GNDIESLHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKCLDAHGCDSLEEVGSPLAVLM 955

Query:   236 SSYK--CVFFYLNENFKLDRKLRG-IVEDALQNIQLMATARWKEIREKISYPALQGHVVL 292
              + K  C + + N N KLD+     I+    +  Q+M+ A            +L      
Sbjct:   956 VTGKIHCTYIFTNCN-KLDQVAESNIISFTWRKSQMMSDAL-NRYNGGFVLESLVS-TCF 1012

Query:   293 PGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRD--HHVRDWSFKFYCE 350
             PG E+P  F  Q  G+ +  K+ P  + ++++ G   CA++ F D  H    +  K  CE
Sbjct:  1013 PGCEVPASFDHQAYGALLQTKL-PRHWCDSRLTGIALCAVILFPDYQHQSNRFLVKCTCE 1071

Query:   351 FKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKV 410
             F  +   C        +G +N               H + +G     C+P      F+  
Sbjct:  1072 FGTEDGPCIS--FSSIVGDINK-------------RHVEKHG---NGCIPSKASLRFQVT 1113

Query:   411 LGSETETLDCCGVKKCGIHLFHASDSMDSM 440
              G+    +  C V KCG  L +  +  D +
Sbjct:  1114 DGASE--VGNCHVLKCGFTLVYTPNDSDDI 1141

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 109/446 (24%), Positives = 194/446 (43%)

Query:    24 PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
             P  ++ +  LV LNL GC+ L SLP+I++  +++ ++L G +  +   +   +S  LE  
Sbjct:   698 PDEMKDMTNLVFLNLRGCTSLLSLPKITT-NSLKTLILSGCSSFQ---TFEVISEHLESL 753

Query:    84 LGDCKNLKTLPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLKL 142
               +   +  LP ++  L  L  + L     +  LP  +  L +L  L L  C  LK    
Sbjct:   754 YLNGTEINGLPPAIGNLHRLIFLNLKDCKNLATLPDCLGELKSLQELKLSRCSKLKIFPD 813

Query:   143 PFDGLYSLTYLYLTDCAITXXXXXXXXXXXXXXXXXXRN-NFERIPESIIRXXXXXXXXX 201
                 + SL  L L   +I                   RN N   +   +           
Sbjct:   814 VTAKMESLLVLLLDGTSIAELPCSIFHLSSLRRLCLSRNDNIRTLRFDMGHMFHLKWLEL 873

Query:   202 XYCERLQSLPKLPCNLYWLDAQHCTTL------ESLSGLFSSYKCVFFYLNENFKLDRKL 255
              YC+ L SLP LP NL  L+A  CT+L      ++L          F + N + +L++  
Sbjct:   874 KYCKNLTSLPILPPNLQCLNAHGCTSLRTVASPQTLPTPTEQIHSTFIFTNCH-ELEQVS 932

Query:   256 RGIVEDALQN-IQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKM 314
             +  +   +Q   +LM+  R+        Y +L G    PG EIP WF+ Q +GS + L++
Sbjct:   933 KNAIISYVQKKSKLMSADRYSP---DFVYKSLIG-TCFPGCEIPAWFNHQALGSVLILEL 988

Query:   315 QPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYC--EF-KIKLKDCDPHVIQRYLGR-- 369
              P  ++++++ G   C +V+F+++  ++ S +  C  EF  + L   +  ++  +  +  
Sbjct:   989 -PQAWNSSRIIGIALCVVVSFKEYRDQNSSLQVQCTCEFTNVSLSQ-ESFMVGGWSEQGD 1046

Query:   370 -VNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGI 428
               + VE DH+ +GY      ++    ++    E +   F+   G  T  ++ C V KCG 
Sbjct:  1047 ETHTVESDHIFIGYTTL--LNIKNRQQFPLATE-ISLRFQVTNG--TSEVEKCKVIKCGF 1101

Query:   429 HLFHASDSMDSM---EDPSKVFNRKE 451
              L +  +  DS    E P    NR++
Sbjct:  1102 SLVYEPNEADSTSWKETPRMEDNRQD 1127

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2146253 AT5G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 7.3e-19, Sum P(3) = 7.3e-19
 Identities = 53/140 (37%), Positives = 83/140 (59%)

Query:     7 LNQIIMAACNIFTKTP----NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLD 62
             L ++ ++AC+   + P      S ++ L+KL+   L+G S+LK+ PEIS+  NI+++ L 
Sbjct:   759 LEELNLSACSNLVELPCALPGDSNMRSLSKLL---LNGSSRLKTFPEIST--NIQELNLS 813

Query:    63 GTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIEC 122
             GTAIEE+PSSI   SRL +L++  CKNLK  P     +  L    L+ + IE++P  +E 
Sbjct:   814 GTAIEEVPSSIRLWSRLDKLDMSRCKNLKMFPPVPDGISVLN---LSETEIEDIPPWVEN 870

Query:   123 LSALCVLDLGDCKSLKSLKL 142
             LS L    +  CK L ++ L
Sbjct:   871 LSQLRHFVMIRCKKLDNISL 890

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0008_340 annotation not avaliable (1184 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	463
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-20
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 94.6 bits (235), Expect = 2e-20
 Identities = 105/376 (27%), Positives = 169/376 (44%), Gaps = 48/376 (12%)

Query: 1    MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL 60
            +Q+  KL  + M+ C      P    ++ L +L   NLSGCS+LKS P+IS+  NI  + 
Sbjct: 677  IQYLNKLEDLDMSRCENLEILPTGINLKSLYRL---NLSGCSRLKSFPDIST--NISWLD 731

Query: 61   LDGTAIEELPSSIGCLSRLLELNLGDCKN-------------LKTLPSSLCKLKSLEEIC 107
            LD TAIEE PS++  L  L EL L + K+             +  L  SL +L  L +I 
Sbjct: 732  LDETAIEEFPSNLR-LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL-FLSDI- 788

Query: 108  LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK--LPFDGLYSLTYLYLTDCAITELPE 165
                ++ ELPS I+ L  L  L++ +C +L++L   +  + L SL    L+ C  + L  
Sbjct: 789  ---PSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLD---LSGC--SRLRT 840

Query: 166  SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQ----SLPKLPCNLYWLD 221
               + +++ +L L R   E +P  I + S LS L ++ C  LQ    ++ KL  +L  +D
Sbjct: 841  FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK-HLETVD 899

Query: 222  AQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKI 281
               C  L   S   S  +      N + KL   +     +   N+   A  + + I +++
Sbjct: 900  FSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCF-NLDQEALLQQQSIFKQL 958

Query: 282  SYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVR 341
                     +L G E+P +F+ +  G+S+T             F F  CA+V      + 
Sbjct: 959  ---------ILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFII 1009

Query: 342  DWSFKFY--CEFKIKL 355
              SF     C F  +L
Sbjct: 1010 SVSFDIQVCCRFIDRL 1025

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 66.1 bits (161), Expect = 9e-12
 Identities = 60/210 (28%), Positives = 88/210 (41%), Gaps = 27/210 (12%)

Query: 15  CNIFTKTPNPSLIQHLNKLVILNLSG--CSKLKSLPEISSAGNIEKILLDGTAIEELPSS 72
            N+     N S +  L  L  L+L     + +  L  +  + N++++ L    IE LPS 
Sbjct: 100 LNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKS-NLKELDLSDNKIESLPSP 158

Query: 73  IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLG 132
           +  L  L  L+L    +L  LP  L  L +L  + L+G+ I +LP  IE LSAL  LDL 
Sbjct: 159 LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217

Query: 133 ----------------------DCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLL 170
                                     L+ L      L +L  L L++  I+ +  SLG L
Sbjct: 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS-SLGSL 276

Query: 171 SSLEELYLERNNFERIPESIIRLSKLSSLL 200
           ++L EL L  N+       I  L  L  LL
Sbjct: 277 TNLRELDLSGNSLSNALPLIALLLLLLELL 306

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 24/190 (12%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
           PS +  L  L +L+ SG S L     + +   +  + L+   +    S +  L+ L  L+
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLD 122

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
           L +  N+  +P  +  LKS                       L  LDL D   ++SL  P
Sbjct: 123 LDN-NNITDIPPLIGLLKS----------------------NLKELDLSD-NKIESLPSP 158

Query: 144 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 203
              L +L  L L+   +++LP+ L  LS+L  L L  N    +P  I  LS L  L +S 
Sbjct: 159 LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218

Query: 204 CERLQSLPKL 213
              ++ L  L
Sbjct: 219 NSIIELLSSL 228

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 78  RLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL 137
           RLL     D   L+ +PS+  + ++L ++ + GS +E+L   +  L+ L  +DL   K+L
Sbjct: 592 RLLRW---DKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL 647

Query: 138 KSLKLPFDGLYSLTYLYLTDCA-ITELPESLGLLSSLEELYLER-NNFERIPESIIRLSK 195
           K +        +L  L L+DC+ + ELP S+  L+ LE+L + R  N E +P  I  L  
Sbjct: 648 KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705

Query: 196 LSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL 234
           L  L +S C RL+S P +  N+ WLD       E  S L
Sbjct: 706 LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 27/185 (14%)

Query: 33  LVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLK 91
           L  LNLS  +   S+P   S  N+E + L    +  E+P+ IG  S L  L+LG    + 
Sbjct: 120 LRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 92  TLPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLKLPFD----- 145
            +P+SL  L SLE + L  +  + ++P            +LG  KSLK + L ++     
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPR-----------ELGQMKSLKWIYLGYNNLSGE 227

Query: 146 ------GLYSLTYLYLTDCAIT-ELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLS 197
                 GL SL +L L    +T  +P SLG L +L+ L+L +N     IP SI  L KL 
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 198 SLLVS 202
           SL +S
Sbjct: 288 SLDLS 292

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 149 SLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYC 204
           +L  L L++  +T +P  +   L +L+ L L  NN   I PE+   L  L SL +S  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 128 VLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNF 183
            LDL + + L  +    F GL +L  L L+   +T + PE+   L SL  L L  NN 
Sbjct: 4   SLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 41.3 bits (96), Expect = 0.001
 Identities = 60/195 (30%), Positives = 82/195 (42%), Gaps = 33/195 (16%)

Query: 26  LIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL- 84
           L  H+  LVI +    + L SLP +     +  + + G  +  LP        LLEL++ 
Sbjct: 220 LPAHITTLVIPD----NNLTSLPALPP--ELRTLEVSGNQLTSLPV---LPPGLLELSIF 270

Query: 85  -GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL-KL 142
                +L  LPS LCKL       + G+ +  LP     L  L V D      L SL  L
Sbjct: 271 SNPLTHLPALPSGLCKL------WIFGNQLTSLPVLPPGLQELSVSD----NQLASLPAL 320

Query: 143 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 202
           P +    L  L+  +  +T LP    L S L+EL +  N    +P     L KL +    
Sbjct: 321 PSE----LCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLASLPTLPSELYKLWA---- 369

Query: 203 YCERLQSLPKLPCNL 217
           Y  RL SLP LP  L
Sbjct: 370 YNNRLTSLPALPSGL 384

Length = 788

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 149 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE 188
           +L  L L++  IT+LP  L  L +LE L L  N    +  
Sbjct: 2   NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 25/100 (25%)

Query: 93  LPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT 151
           +P+ + KL+ L+ I L+G++I   +P  +  +++L VLDL    S  S    F+G     
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL----SYNS----FNGS---- 481

Query: 152 YLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESI 190
                      +PESLG L+SL  L L  N+   R+P ++
Sbjct: 482 -----------IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	463
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.64
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.4
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.36
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.88
PRK15386	426	type III secretion protein GogB; Provisional	98.74
PRK15386	426	type III secretion protein GogB; Provisional	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.58
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.57
PLN03150	623	hypothetical protein; Provisional	98.53
KOG4341	483	consensus F-box protein containing LRR [General fu	98.49
PLN03150	623	hypothetical protein; Provisional	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.39
KOG4341	483	consensus F-box protein containing LRR [General fu	98.33
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.29
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.14
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.13
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.66
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.42
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.41
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.34
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.92
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.61
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.15
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.42
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.97
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.18
KOG4308	478	consensus LRR-containing protein [Function unknown	89.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.11
smart00370	26	LRR Leucine-rich repeats, outliers.	86.11
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.95
smart00370	26	LRR Leucine-rich repeats, outliers.	85.95
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.9
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.82

>PLN03210 Resistant to P

Probab=100.00  E-value=2.2e-39  Score=367.49  Aligned_cols=388  Identities=26%  Similarity=0.383  Sum_probs=232.1

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeecc-CCCccCccccCCCCcc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGT-AIEELPSSIGCLSRLL   80 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~   80 (463)
                      .+++|+.|+|++|+.++.+  | .++.+++|+.|+|++|..+..+|. ++.+++|+.|++++| .++.+|..+ ++++|+
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~i--p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEI--P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcC--C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            3445555555554444444  2 244455555555555555555554 455555555555543 344444433 445555


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCcc---------------------------------------------
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE---------------------------------------------  115 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~---------------------------------------------  115 (463)
                      .|++++|..+..+|..   ..+|+.|++++|.++.                                             
T Consensus       708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~  784 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF  784 (1153)
T ss_pred             EEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence            5555555444333321   1223333333333333                                             


Q ss_pred             ---------CCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC-CcccccCCcccccccccccccccc
Q 012450          116 ---------LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT-ELPESLGLLSSLEELYLERNNFER  185 (463)
Q Consensus       116 ---------lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~-~~p~~l~~l~~L~~L~Ls~n~l~~  185 (463)
                               +|..++++++|+.|++++|..++.+|... ++++|+.|++++|... .+|.   ..++|+.|+|++|.++.
T Consensus       785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~  860 (1153)
T PLN03210        785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEE  860 (1153)
T ss_pred             CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCcc
Confidence                     34444445555555555555555554432 4455555555555322 2332   23567788888888888


Q ss_pred             cchhhhCCCCccEeccccccccccCCCCC---CCccEeeccCcccccccccCCCCce---------------eEEEeecC
Q 012450          186 IPESIIRLSKLSSLLVSYCERLQSLPKLP---CNLYWLDAQHCTTLESLSGLFSSYK---------------CVFFYLNE  247 (463)
Q Consensus       186 lp~~l~~l~~L~~L~L~~c~~l~~l~~l~---~~L~~L~i~~c~~L~~l~~~~~~~~---------------~~~~~~~~  247 (463)
                      +|.++..+++|+.|++++|..++.+|...   ++|+.+++.+|.+|+.++.......               ....|.+ 
T Consensus       861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~n-  939 (1153)
T PLN03210        861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFIN-  939 (1153)
T ss_pred             ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccccc-
Confidence            99999999999999999999999988644   4677889999999987654221100               0113555 


Q ss_pred             ccchHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccccceEeecCCCCCccccccCCCceEE-EEcCCCCCCCCceee
Q 012450          248 NFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSIT-LKMQPGCFSNNKVFG  326 (463)
Q Consensus       248 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~g  326 (463)
                      |++|++.+.         ++               ....+..+++||.++|+||.||+.|++++ |.+|+. |....|.|
T Consensus       940 C~~L~~~a~---------l~---------------~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~-~~~~~~~~  994 (1153)
T PLN03210        940 CFNLDQEAL---------LQ---------------QQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHI-SPCQPFFR  994 (1153)
T ss_pred             ccCCCchhh---------hc---------------ccccceEEECCCccCchhccCCcccceeeeeccCCc-ccCCCccc
Confidence            888876442         00               01112338899999999999999999998 999999 99899999


Q ss_pred             eEeEEEEEecCCC--CCCceeEEEEEEEccCCCCCCce--eEEecCCccccCCCeEEEEEEeeec-CCcCCCcCCCCCCc
Q 012450          327 FVFCAIVAFRDHH--VRDWSFKFYCEFKIKLKDCDPHV--IQRYLGRVNYVEPDHLLLGYYFFNH-QDLNGCWEYNCVPE  401 (463)
Q Consensus       327 f~~c~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sdh~~l~~~~~~~-~~~~~~~~~~~~~~  401 (463)
                      |++|+|+++....  ...+.++|.|+|.+..|+++...  .+.+.   ....++|+++|...... ......+  .+.++
T Consensus       995 f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~ 1069 (1153)
T PLN03210        995 FRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFS---VTKKGSHLVIFDCCFPLNEDNAPLA--ELNYD 1069 (1153)
T ss_pred             eEEEEEEecCccccCCCceeEEEEEEEECCCCCccccCCCceeEe---eeccccceEEecccccccccccchh--ccCCc
Confidence            9999999876632  23567889999999888765410  01110   12346677666541000 0000011  24567


Q ss_pred             eEEEEEEEecCccccccCceeEEeeccEEEEecCCC
Q 012450          402 AVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSM  437 (463)
Q Consensus       402 ~~~~~f~~~~~~~~~~~~~~~vk~cGv~li~~~~~~  437 (463)
                      +++++|...+..     ..++||+|||+++|+.+..
T Consensus      1070 ~~~~~f~~~~~~-----~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210       1070 HVDIQFRLTNKN-----SQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred             eeeEEEEEecCC-----CCeEEEeeeEEEeccCCCc
Confidence            888888866543     1379999999999966544

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=9.4e-21  Score=214.05  Aligned_cols=202  Identities=26%  Similarity=0.324  Sum_probs=99.1

Q ss_pred             cccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCccEEeeecCCCCCccchhcCCCC
Q 012450           24 PSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK  101 (463)
Q Consensus        24 ~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~  101 (463)
                      |..++.+++|++|++++|.....+|. ++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..+++++
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence            34444455555555555444444444 444555555555555443 3444445555555555555444444454455555


Q ss_pred             CCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCcccccccccc
Q 012450          102 SLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLE  179 (463)
Q Consensus       102 ~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls  179 (463)
                      +|++|++++|.+. .+|..++.+++|+.|++++|.....+|..+.++++|+.|++++|.+.. +|..+..+++|+.|+++
T Consensus       237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            5555555555443 344445555555555555544333444444455555555555555443 44445555555555555


Q ss_pred             ccccc-ccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCc
Q 012450          180 RNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC  225 (463)
Q Consensus       180 ~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c  225 (463)
                      +|.++ .+|..+..+++|+.|++++|.....+|..   .++|+.|+++++
T Consensus       317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence            55543 34444555555555555555433333321   234555555444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=1e-20  Score=213.76  Aligned_cols=208  Identities=25%  Similarity=0.326  Sum_probs=174.3

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCc
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRL   79 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L   79 (463)
                      +.+++|++|+|++|.....+  |..+.++++|++|++++|.....+|. ++.+++|++|++++|.+. .+|..++.+++|
T Consensus       161 ~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  238 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL  238 (968)
T ss_pred             hcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence            46789999999987666667  78889999999999999887777887 889999999999999887 688889999999


Q ss_pred             cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450           80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~  158 (463)
                      ++|++++|.....+|..++++++|+.|++++|.+. .+|..+..+++|++|++++|.....+|..+.++++|+.|++++|
T Consensus       239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n  318 (968)
T PLN00113        239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN  318 (968)
T ss_pred             CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence            99999998777788888999999999999999886 57788888899999999988766677777788888888888888


Q ss_pred             CCCC-cccccCCccccccccccccccc-ccchhhhCCCCccEeccccccccccCC
Q 012450          159 AITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLP  211 (463)
Q Consensus       159 ~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~  211 (463)
                      .+.+ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.....+|
T Consensus       319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence            8775 7777888888888888888875 677778888888888888776444443

>PLN03210 Resistant to P

Probab=99.81  E-value=2.8e-19  Score=203.81  Aligned_cols=241  Identities=32%  Similarity=0.487  Sum_probs=176.3

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeecc-CCCccCccccCCCCccEE
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT-AIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L   82 (463)
                      ..+|++|+|.+ +.+..+  |..+..+++|+.|+|++|..++.+|.++.+++|+.|++++| .+..+|.+++++++|+.|
T Consensus       610 ~~~L~~L~L~~-s~l~~L--~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        610 PENLVKLQMQG-SKLEKL--WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             ccCCcEEECcC-cccccc--ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            46788888888 457777  77888899999999999888999998888999999999986 677889889999999999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCC-ccCCccCCCCCCccEEecCCCCCCCcCcccC-----------------
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAI-EELPSPIECLSALCVLDLGDCKSLKSLKLPF-----------------  144 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i-~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l-----------------  144 (463)
                      ++++|..++.+|..+ ++++|+.|++++|.. ..+|..   ..+|+.|+++++. ++.+|..+                 
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEK  761 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhh
Confidence            999999999998766 788999999998753 344432   4567777777665 44444321                 


Q ss_pred             -------------CCCCCccEEEeeCCCC-CCcccccCCcccccccccccc-cccccchhhhCCCCccEecccccccccc
Q 012450          145 -------------DGLYSLTYLYLTDCAI-TELPESLGLLSSLEELYLERN-NFERIPESIIRLSKLSSLLVSYCERLQS  209 (463)
Q Consensus       145 -------------~~l~~L~~L~L~~~~l-~~~p~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~c~~l~~  209 (463)
                                   ...++|+.|+|++|.. .++|..++++++|+.|++++| .++.+|..+ .+++|+.|++++|..++.
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence                         1134677788887753 448888888888888888887 467777655 678888888888877776


Q ss_pred             CCCCC-----------------------CCccEeeccCcccccccccCCCCceeE-EEeecCccchHH
Q 012450          210 LPKLP-----------------------CNLYWLDAQHCTTLESLSGLFSSYKCV-FFYLNENFKLDR  253 (463)
Q Consensus       210 l~~l~-----------------------~~L~~L~i~~c~~L~~l~~~~~~~~~~-~~~~~~c~~l~~  253 (463)
                      +|..+                       ++|+.|++.+|.+|+.++.....+..+ .+..++|.+|..
T Consensus       841 ~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        841 FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             ccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            66543                       345566666777777766554443332 123344777754

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=2.6e-21  Score=193.91  Aligned_cols=203  Identities=24%  Similarity=0.344  Sum_probs=135.7

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   81 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   81 (463)
                      +..|..|||++ +.++++  |..+...+++-+|+|++ +++..+|.  +-++..|-.|+|++|.+..+|+.+.++..|++
T Consensus       102 l~dLt~lDLSh-NqL~Ev--P~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  102 LKDLTILDLSH-NQLREV--PTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT  177 (1255)
T ss_pred             cccceeeecch-hhhhhc--chhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence            44455555555 445555  45555555555555555 34555554  44555555556666666566666666666666


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA  159 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~  159 (463)
                      |.|++|.....--..+-.+++|+.|.+++++-+  .+|.++..+.+|+.+|++.|. +..+|..+.++++|+.|+|++|.
T Consensus       178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc
Confidence            666655432211122333555666666666544  678888888999999998654 78888888889999999999999


Q ss_pred             CCCcccccCCcccccccccccccccccchhhhCCCCccEecccccc-ccccCC
Q 012450          160 ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE-RLQSLP  211 (463)
Q Consensus       160 l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~-~l~~l~  211 (463)
                      ++++....+...+|++|++|+|+++.+|..+.++++|+.|.+.+|+ ....||
T Consensus       257 iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP  309 (1255)
T KOG0444|consen  257 ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP  309 (1255)
T ss_pred             eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc
Confidence            9887767777888888888888888888888888888888887775 233444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=3.6e-20  Score=185.73  Aligned_cols=225  Identities=28%  Similarity=0.400  Sum_probs=173.8

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CC------------------------CCCCcc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-IS------------------------SAGNIE   57 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~------------------------~l~~L~   57 (463)
                      .+.++-.|+|++ +++..+| .+.+-++..|-.|||++ +.+..+|. +.                        .|++|+
T Consensus       124 ~AKn~iVLNLS~-N~IetIP-n~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~  200 (1255)
T KOG0444|consen  124 YAKNSIVLNLSY-NNIETIP-NSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS  200 (1255)
T ss_pred             hhcCcEEEEccc-CccccCC-chHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence            345566666666 4555553 23334555555555555 34444443 33                        355566


Q ss_pred             EEEeeccC--CCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCC
Q 012450           58 KILLDGTA--IEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK  135 (463)
Q Consensus        58 ~L~L~~~~--i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~  135 (463)
                      .|.+++++  +..+|.++..+.+|..++++. +++..+|+.+.++++|+.|+|++|.|+++.-..+.+.+|+.|+++.|+
T Consensus       201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch
Confidence            66666653  336788888889999999987 568889999999999999999999999998888889999999999876


Q ss_pred             CCCcCcccCCCCCCccEEEeeCCCCC--CcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC-
Q 012450          136 SLKSLKLPFDGLYSLTYLYLTDCAIT--ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-  212 (463)
Q Consensus       136 ~l~~l~~~l~~l~~L~~L~L~~~~l~--~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-  212 (463)
                       ++.+|..+.+++.|+.|.+.+|+++  ++|+.|+.+..|+.+..++|++.-+|+.+..|.+|+.|.|++|. |-.+|+ 
T Consensus       280 -Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPea  357 (1255)
T KOG0444|consen  280 -LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEA  357 (1255)
T ss_pred             -hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhh
Confidence             8889999999999999999999765  59999999999999999999999999999999999999999874 445664 


Q ss_pred             --CCCCccEeeccCccccccccc
Q 012450          213 --LPCNLYWLDAQHCTTLESLSG  233 (463)
Q Consensus       213 --l~~~L~~L~i~~c~~L~~l~~  233 (463)
                        +.+.|+.||++..++|.--|.
T Consensus       358 IHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  358 IHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             hhhcCCcceeeccCCcCccCCCC
Confidence              567889999999888875544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.70  E-value=1.6e-19  Score=173.19  Aligned_cols=247  Identities=29%  Similarity=0.386  Sum_probs=175.7

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   81 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   81 (463)
                      +++.|..|++.+ +.+.+.  |+.++.+.+++.|+.++ +++..+|. ++.+.+|.+|+++.|.++++|++++.+-.|..
T Consensus        66 nL~~l~vl~~~~-n~l~~l--p~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   66 NLACLTVLNVHD-NKLSQL--PAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED  141 (565)
T ss_pred             cccceeEEEecc-chhhhC--CHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence            455566666666 556666  66677777777777776 35556665 66777777777777777777777777777777


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT  161 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~  161 (463)
                      |+..+| ++.++|.++.++.+|..|++.+|.++.+|+..-.++.|++|+...|- ++.+|..++++.+|+.|++..|.+.
T Consensus       142 l~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  142 LDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             hhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcccc
Confidence            776663 45667777777777777777777777777666667778888776654 7778888888889999999999888


Q ss_pred             CcccccCCcccccccccccccccccchhhh-CCCCccEeccccccccccCCC---CCCCccEeeccCcccccccccCCCC
Q 012450          162 ELPESLGLLSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSGLFSS  237 (463)
Q Consensus       162 ~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~i~~c~~L~~l~~~~~~  237 (463)
                      .+| .+..|..|++|+++.|.++.+|+... ++++|..||+..| ++++.|.   +..+|++||+++ ..+.+++.....
T Consensus       220 ~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgn  296 (565)
T KOG0472|consen  220 FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGN  296 (565)
T ss_pred             cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCccccc
Confidence            888 68888889999999888888887665 7889999999987 5777775   346788888877 356666665555


Q ss_pred             ceeEEEeecCccchHHHHhHHH
Q 012450          238 YKCVFFYLNENFKLDRKLRGIV  259 (463)
Q Consensus       238 ~~~~~~~~~~c~~l~~~~~~~~  259 (463)
                      +...++... -.-+...-++++
T Consensus       297 lhL~~L~le-GNPlrTiRr~ii  317 (565)
T KOG0472|consen  297 LHLKFLALE-GNPLRTIRREII  317 (565)
T ss_pred             ceeeehhhc-CCchHHHHHHHH
Confidence            433332333 223444444554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=4.8e-19  Score=151.94  Aligned_cols=174  Identities=30%  Similarity=0.388  Sum_probs=103.3

Q ss_pred             CCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCc
Q 012450           47 LPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSAL  126 (463)
Q Consensus        47 lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L  126 (463)
                      +|.+..+.+++.|.|++|+++.+|+.|..+.+|+.|++.+ +.++.+|..++.+++|+.|++.-|++..+|..++.++.|
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            3334445555555666666666666666666666666655 345556655666666666666666666666666666666


Q ss_pred             cEEecCCCCC-CCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEecccccc
Q 012450          127 CVLDLGDCKS-LKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       127 ~~L~l~~c~~-l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~  205 (463)
                      +.||+.+|.. -..+|..+..++.|+.|+|++|.+.-+|..++.+++|+.|.+.+|.+-++|..++.++.|++|.+.+|.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            6666655442 223555566666666666666666666666666777777777776666666666666777777666652


Q ss_pred             ccccCCCCCCCccEeeccCc
Q 012450          206 RLQSLPKLPCNLYWLDAQHC  225 (463)
Q Consensus       206 ~l~~l~~l~~~L~~L~i~~c  225 (463)
                       ++   .+|+.+..|++.+-
T Consensus       185 -l~---vlppel~~l~l~~~  200 (264)
T KOG0617|consen  185 -LT---VLPPELANLDLVGN  200 (264)
T ss_pred             -ee---ecChhhhhhhhhhh
Confidence             22   33444444444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.66  E-value=2.4e-19  Score=171.89  Aligned_cols=206  Identities=29%  Similarity=0.374  Sum_probs=172.8

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   81 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   81 (463)
                      .+.+++.|+.++ +++.++  |..+..+.+|+.|+++++ .++++|+ ++.+-.|+.|+..+|++.++|..+.++.+|..
T Consensus        89 ~l~~l~~l~vs~-n~ls~l--p~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~  164 (565)
T KOG0472|consen   89 ELEALKSLNVSH-NKLSEL--PEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSK  164 (565)
T ss_pred             HHHHHHHhhccc-chHhhc--cHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHH
Confidence            345677888888 678888  788999999999999995 5566666 99999999999999999999999999999999


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT  161 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~  161 (463)
                      |++.++ .++.+|...-+++.|++|+...|-++.+|+.++.+.+|..|++..|+ +..+| .+.++..|++|+++.|.+.
T Consensus       165 l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  165 LDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             hhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHH
Confidence            999995 56667666656999999999999999999999999999999999876 77788 4888899999999999888


Q ss_pred             CcccccC-CcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccE
Q 012450          162 ELPESLG-LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYW  219 (463)
Q Consensus       162 ~~p~~l~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~  219 (463)
                      -+|.... ++++|..||+++|+++++|..+..+.+|++||+++|    +|..+|.+|-.
T Consensus       242 ~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN----~is~Lp~sLgn  296 (565)
T KOG0472|consen  242 MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN----DISSLPYSLGN  296 (565)
T ss_pred             hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC----ccccCCccccc
Confidence            8887665 888999999999999999998888999999999987    44444444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2e-18  Score=148.15  Aligned_cols=166  Identities=31%  Similarity=0.460  Sum_probs=150.1

Q ss_pred             ccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCC
Q 012450           25 SLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSL  103 (463)
Q Consensus        25 ~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L  103 (463)
                      .++-.+.+++.|.|+++ ++..+|. +..+.+|+.|++.+|+|+++|.++..+++|+.|++.- +.+..+|.+++.++.|
T Consensus        27 ~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPAL  104 (264)
T ss_pred             ccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchh
Confidence            45557888999999995 6666666 9999999999999999999999999999999999987 4678899999999999


Q ss_pred             cEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccc
Q 012450          104 EEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERN  181 (463)
Q Consensus       104 ~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n  181 (463)
                      +.|++.+|.+.  .+|..+..++.|+.|++++|. .+.+|...+++++|+.|.+.+|.+.++|..++.++.|++|++.+|
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence            99999999887  689999999999999999977 678888899999999999999999999999999999999999999


Q ss_pred             cccccchhhhCC
Q 012450          182 NFERIPESIIRL  193 (463)
Q Consensus       182 ~l~~lp~~l~~l  193 (463)
                      +++-+|..++++
T Consensus       184 rl~vlppel~~l  195 (264)
T KOG0617|consen  184 RLTVLPPELANL  195 (264)
T ss_pred             eeeecChhhhhh
Confidence            999999776543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.64  E-value=1e-16  Score=160.20  Aligned_cols=66  Identities=32%  Similarity=0.274  Sum_probs=35.2

Q ss_pred             CCCCCccEEEeeCCCCCCc-ccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCC
Q 012450          145 DGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLP  211 (463)
Q Consensus       145 ~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~  211 (463)
                      .++.++++|+|..|++..+ ..++.++++|+.|+|+.|.+..+. +.-..+++|+.|+|++| .++.++
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~  333 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLD  333 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCC
Confidence            3344445555555554442 235556666666666666665432 23344566666666665 344444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.63  E-value=5.4e-17  Score=162.24  Aligned_cols=200  Identities=23%  Similarity=0.291  Sum_probs=117.8

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCC
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSR   78 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~   78 (463)
                      +.++.|+.|||+. +.+.+++ ...+..-.++++|+|++| .++.+..  +..+.+|..|.|+.|+|+.+|.- +.+|++
T Consensus       146 ~~l~alrslDLSr-N~is~i~-~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~  222 (873)
T KOG4194|consen  146 SALPALRSLDLSR-NLISEIP-KPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK  222 (873)
T ss_pred             HhHhhhhhhhhhh-chhhccc-CCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence            3456777777777 5666664 344555567777777773 4555544  66666777777777777776654 444677


Q ss_pred             ccEEeeecCCCCCcc-c------------------------hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecC
Q 012450           79 LLELNLGDCKNLKTL-P------------------------SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLG  132 (463)
Q Consensus        79 L~~L~l~~c~~l~~l-p------------------------~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~  132 (463)
                      |+.|+|..|. ++.. .                        ..+..+.++++|+|..|+++.+.. ++.+++.|+.|+++
T Consensus       223 L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  223 LESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             hhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence            7777666542 2211 1                        123344555555555555555432 45666777777777


Q ss_pred             CCCCCCcCcccCCCCCCccEEEeeCCCCCCcc-cccCCcccccccccccccccccch-hhhCCCCccEecccccc
Q 012450          133 DCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       133 ~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~  205 (463)
                      +|..-+.-+..+.-.++|+.|+|++|++++++ ..+..+..|++|+|++|++..+.+ .+..+++|+.|||++|.
T Consensus       302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             hhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            76644444445666677777777777777754 344555566666666665554432 33445555555555553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.62  E-value=2.8e-15  Score=161.60  Aligned_cols=198  Identities=26%  Similarity=0.404  Sum_probs=92.0

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   84 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l   84 (463)
                      +...|++++ ..++.+  |..+.  ++|+.|+|++| .++.+|. +.  ++|+.|++++|.++.+|..+.  .+|+.|++
T Consensus       179 ~~~~L~L~~-~~LtsL--P~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKI-LGLTTI--PACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCC-CCcCcC--Ccccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence            345555555 345555  33332  35555666553 4445554 21  355555555555555554332  34555555


Q ss_pred             ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCC-------------------
Q 012450           85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD-------------------  145 (463)
Q Consensus        85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~-------------------  145 (463)
                      ++|. +..+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++|. ++.+|..+.                   
T Consensus       249 s~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~  322 (754)
T PRK15370        249 SINR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPET  322 (754)
T ss_pred             cCCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCcc
Confidence            5543 334554432  345555555555555554332  355555555543 334433221                   


Q ss_pred             CCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC-CCCCccEeeccC
Q 012450          146 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQH  224 (463)
Q Consensus       146 ~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~  224 (463)
                      ..++|+.|++++|.++.+|..+  +++|+.|++++|+++.+|..+.  ++|+.|+|++|. +..+|. ++.+|+.|++++
T Consensus       323 l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~  397 (754)
T PRK15370        323 LPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNA-LTNLPENLPAALQIMQASR  397 (754)
T ss_pred             ccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCc-CCCCCHhHHHHHHHHhhcc
Confidence            1134444444444444444332  2345555555555544444331  345555555542 333332 333444455444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.62  E-value=7.7e-16  Score=165.85  Aligned_cols=187  Identities=26%  Similarity=0.402  Sum_probs=128.6

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   83 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   83 (463)
                      ++|+.|+|++ +.++.+  |..+.  .+|+.|++++| .++.+|. +  .++|+.|+|++|.++.+|..+.  .+|+.|+
T Consensus       199 ~~L~~L~Ls~-N~LtsL--P~~l~--~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDN-NELKSL--PENLQ--GNIKTLYANSN-QLTSIPATL--PDTIQEMELSINRITELPERLP--SALQSLD  268 (754)
T ss_pred             cCCcEEEecC-CCCCcC--Chhhc--cCCCEEECCCC-ccccCChhh--hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence            3577888877 466677  44443  57888888775 4666665 3  2467777777777776666543  4667777


Q ss_pred             eecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCC-------------------CCCCccEEecCCCCCCCcCcccC
Q 012450           84 LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIE-------------------CLSALCVLDLGDCKSLKSLKLPF  144 (463)
Q Consensus        84 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~-------------------~l~~L~~L~l~~c~~l~~l~~~l  144 (463)
                      +++| .+..+|..+.  ++|+.|++++|.++.+|..+.                   ..++|+.|++++|. ++.+|..+
T Consensus       269 Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l  344 (754)
T PRK15370        269 LFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASL  344 (754)
T ss_pred             CcCC-ccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhh
Confidence            7653 4555665442  356666666666655543211                   12578888888775 56676544


Q ss_pred             CCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC
Q 012450          145 DGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK  212 (463)
Q Consensus       145 ~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~  212 (463)
                        .++|+.|++++|++..+|..+  .++|+.|+|++|+++.+|..+.  ..|+.|++++|. +..+|.
T Consensus       345 --~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~  405 (754)
T PRK15370        345 --PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPE  405 (754)
T ss_pred             --cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCch
Confidence              368999999999999888755  4799999999999999998765  379999999984 556664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.59  E-value=9.7e-15  Score=156.72  Aligned_cols=110  Identities=22%  Similarity=0.340  Sum_probs=60.5

Q ss_pred             cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeec
Q 012450            7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD   86 (463)
Q Consensus         7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~   86 (463)
                      -..|+|+++ .++.+  |..+.  ++|+.|++.+ +.++.+|.+  +++|++|++++|.++.+|..   .++|+.|++++
T Consensus       203 ~~~LdLs~~-~LtsL--P~~l~--~~L~~L~L~~-N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGES-GLTTL--PDCLP--AHITTLVIPD-NNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCC-CCCcC--Ccchh--cCCCEEEccC-CcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence            456677763 56666  44443  3667777776 356666653  46677777777777666642   34566666665


Q ss_pred             CCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCC
Q 012450           87 CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC  134 (463)
Q Consensus        87 c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c  134 (463)
                      |. +..+|..   .++|+.|++++|.++.+|..   +++|+.|++++|
T Consensus       272 N~-L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N  312 (788)
T PRK15387        272 NP-LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN  312 (788)
T ss_pred             Cc-hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC
Confidence            42 4444431   23445555555555555432   244555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=2.8e-14  Score=153.26  Aligned_cols=200  Identities=29%  Similarity=0.353  Sum_probs=161.7

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   84 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l   84 (463)
                      ++|+.|++.+ +.++.+  |.   ..++|++|++++| .++.+|..  .++|+.|++++|.++.+|..   ..+|+.|++
T Consensus       222 ~~L~~L~L~~-N~Lt~L--P~---lp~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~L  289 (788)
T PRK15387        222 AHITTLVIPD-NNLTSL--PA---LPPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSNPLTHLPAL---PSGLCKLWI  289 (788)
T ss_pred             cCCCEEEccC-CcCCCC--CC---CCCCCcEEEecCC-ccCcccCc--ccccceeeccCCchhhhhhc---hhhcCEEEC
Confidence            4789999998 678888  44   3589999999995 78888863  57999999999999988863   367889999


Q ss_pred             ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450           85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP  164 (463)
Q Consensus        85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p  164 (463)
                      ++| .++.+|.   .+++|+.|++++|.++.+|..   ..+|+.|++++|. ++.+|.   ...+|+.|+|++|+++.+|
T Consensus       290 s~N-~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N~Ls~LP  358 (788)
T PRK15387        290 FGN-QLTSLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDNQLASLP  358 (788)
T ss_pred             cCC-ccccccc---cccccceeECCCCccccCCCC---cccccccccccCc-cccccc---cccccceEecCCCccCCCC
Confidence            996 5677876   357899999999999998863   3467888999876 666764   2257999999999999988


Q ss_pred             cccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCcccccccccCC
Q 012450          165 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLF  235 (463)
Q Consensus       165 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~l~~~~  235 (463)
                      ..   .++|+.|++++|.++.+|..   ..+|+.|++++| .+..+|..+++|+.|+++++ .|+.+|...
T Consensus       359 ~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N-~LssIP~l~  421 (788)
T PRK15387        359 TL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPMLP  421 (788)
T ss_pred             CC---CcccceehhhccccccCccc---ccccceEEecCC-cccCCCCcccCCCEEEccCC-cCCCCCcch
Confidence            63   46788999999999988864   357999999998 57789988899999999986 477776543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.56  E-value=1.5e-16  Score=166.73  Aligned_cols=215  Identities=27%  Similarity=0.348  Sum_probs=151.2

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   83 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   83 (463)
                      .+|++++++. +.+..+  |+.+..+.+|+.|++.+| .+..+|. +..+.+|+.|.+..|.++.+|.....++.|++|+
T Consensus       241 ~nl~~~dis~-n~l~~l--p~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  241 LNLQYLDISH-NNLSNL--PEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             ccceeeecch-hhhhcc--hHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence            4567777776 566666  577777777777777773 4566666 6677777777777777777777666777777777


Q ss_pred             eecCCCCCccchhcC--------------------------CCCCCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCC
Q 012450           84 LGDCKNLKTLPSSLC--------------------------KLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKS  136 (463)
Q Consensus        84 l~~c~~l~~lp~~l~--------------------------~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~  136 (463)
                      +..| ++..+|..+.                          .++.|+.|.+.+|.++ ..-+.+.+..+|+.|+|++|. 
T Consensus       317 L~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-  394 (1081)
T KOG0618|consen  317 LQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-  394 (1081)
T ss_pred             ehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-
Confidence            7764 4454543221                          1123444455555554 223345677888888888875 


Q ss_pred             CCcCccc-CCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccc--cCC-C
Q 012450          137 LKSLKLP-FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQ--SLP-K  212 (463)
Q Consensus       137 l~~l~~~-l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~--~l~-~  212 (463)
                      +..+|.. +.++..|+.|+|+||.++.+|..+..++.|++|...+|++..+| .+.+++.|+.+|++.|. |+  .+| .
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~  472 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEA  472 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch-hhhhhhhhh
Confidence            6666653 66778888888888888888888888888888888888888888 78889999999999874 32  223 3


Q ss_pred             CC-CCccEeeccCccc
Q 012450          213 LP-CNLYWLDAQHCTT  227 (463)
Q Consensus       213 l~-~~L~~L~i~~c~~  227 (463)
                      .| ++|++||++|.+.
T Consensus       473 ~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCCcccceeeccCCcc
Confidence            56 8999999988653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.44  E-value=1.7e-14  Score=151.39  Aligned_cols=196  Identities=27%  Similarity=0.361  Sum_probs=135.6

Q ss_pred             cCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450           31 NKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG  110 (463)
Q Consensus        31 ~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  110 (463)
                      ++|+.|..++|... .+-.-....+|++++++.+.++.+|++++.+.+|+.|++.+| .+..+|..+....+|+.|.+..
T Consensus       219 ~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  219 PSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             cchheeeeccCcce-eeccccccccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhh
Confidence            34445555554333 111133456777777777777777777777777777777764 3466666666666666666666


Q ss_pred             CCCccCCccCCCCCCccEEecCCCCCCCcCc-------------------------------------------------
Q 012450          111 SAIEELPSPIECLSALCVLDLGDCKSLKSLK-------------------------------------------------  141 (463)
Q Consensus       111 ~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~-------------------------------------------------  141 (463)
                      |.++.+|...+.++.|++|++..|. +..+|                                                 
T Consensus       297 nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  297 NELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            6666666666666666666665543 22211                                                 


Q ss_pred             -ccCCCCCCccEEEeeCCCCCCcccc-cCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC--CCCc
Q 012450          142 -LPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNL  217 (463)
Q Consensus       142 -~~l~~l~~L~~L~L~~~~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L  217 (463)
                       +.+.+..+|+.|+|++|.+.++|.. +.++..|++|+||||+++.+|..+..+..|+.|....| .+..+|++  .+.|
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL  454 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQL  454 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcc
Confidence             1245678899999999999998864 56899999999999999999999999999999988776 46677764  4678


Q ss_pred             cEeeccCccccccc
Q 012450          218 YWLDAQHCTTLESL  231 (463)
Q Consensus       218 ~~L~i~~c~~L~~l  231 (463)
                      +.+|+ +|..|+.+
T Consensus       455 ~~lDl-S~N~L~~~  467 (1081)
T KOG0618|consen  455 KVLDL-SCNNLSEV  467 (1081)
T ss_pred             eEEec-ccchhhhh
Confidence            99998 44555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.40  E-value=2e-14  Score=141.68  Aligned_cols=202  Identities=24%  Similarity=0.213  Sum_probs=115.8

Q ss_pred             cccccCCcCccEEeeecCCCC----CCCCC-CCCCCCccEEEeeccCCCc-------cCccccCCCCccEEeeecCCCCC
Q 012450           24 PSLIQHLNKLVILNLSGCSKL----KSLPE-ISSAGNIEKILLDGTAIEE-------LPSSIGCLSRLLELNLGDCKNLK   91 (463)
Q Consensus        24 ~~~~~~l~~L~~L~L~~c~~l----~~lp~-l~~l~~L~~L~L~~~~i~~-------lp~~i~~l~~L~~L~l~~c~~l~   91 (463)
                      ...+..+.+|+.|++++|...    ..++. +...++|++|+++++.+..       ++..+..+++|+.|++++|....
T Consensus        16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   95 (319)
T cd00116          16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP   95 (319)
T ss_pred             HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence            344555666777777775421    12333 4556667777777665542       22345556677777777765544


Q ss_pred             ccchhcCCCC---CCcEEEEECCCCc-----cCCccCCCC-CCccEEecCCCCCCC----cCcccCCCCCCccEEEeeCC
Q 012450           92 TLPSSLCKLK---SLEEICLTGSAIE-----ELPSPIECL-SALCVLDLGDCKSLK----SLKLPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        92 ~lp~~l~~l~---~L~~L~l~~~~i~-----~lp~~i~~l-~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~L~~~  158 (463)
                      ..+..+..+.   +|++|++++|.+.     .+...+..+ ++|+.|++++|....    .+...+..+++|++|++++|
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN  175 (319)
T ss_pred             hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence            4444333333   3777777777665     122334455 677777777776321    22333455567777777777


Q ss_pred             CCCC-----cccccCCccccccccccccccc-----ccchhhhCCCCccEeccccccccc----c----CCCCCCCccEe
Q 012450          159 AITE-----LPESLGLLSSLEELYLERNNFE-----RIPESIIRLSKLSSLLVSYCERLQ----S----LPKLPCNLYWL  220 (463)
Q Consensus       159 ~l~~-----~p~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~c~~l~----~----l~~l~~~L~~L  220 (463)
                      .+.+     ++..+..+++|++|++++|.++     .+...+..+++|+.|++++|+.-.    .    ++...+.|+.|
T Consensus       176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L  255 (319)
T cd00116         176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL  255 (319)
T ss_pred             CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence            7663     3333445567777777777664     234455667777777777764211    1    11112567777


Q ss_pred             eccCc
Q 012450          221 DAQHC  225 (463)
Q Consensus       221 ~i~~c  225 (463)
                      ++.+|
T Consensus       256 ~l~~n  260 (319)
T cd00116         256 SLSCN  260 (319)
T ss_pred             EccCC
Confidence            77776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.36  E-value=1.1e-13  Score=136.35  Aligned_cols=220  Identities=22%  Similarity=0.187  Sum_probs=154.5

Q ss_pred             CCCCcceeecccccCc----CCCCCcccccCCcCccEEeeecCCCCC------CCCC-CCCCCCccEEEeeccCCC-ccC
Q 012450            3 HHGKLNQIIMAACNIF----TKTPNPSLIQHLNKLVILNLSGCSKLK------SLPE-ISSAGNIEKILLDGTAIE-ELP   70 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l----~~~~~~~~~~~l~~L~~L~L~~c~~l~------~lp~-l~~l~~L~~L~L~~~~i~-~lp   70 (463)
                      .+++|++|++++|...    ..+  +..+...++|+.|+++++..-+      .++. +..+++|++|++++|.+. ..+
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i--~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKAL--ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHH--HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            3567999999997642    223  4566778889999999864331      1122 566889999999999886 334


Q ss_pred             ccccCCC---CccEEeeecCCCCC----ccchhcCCC-CCCcEEEEECCCCc-----cCCccCCCCCCccEEecCCCCCC
Q 012450           71 SSIGCLS---RLLELNLGDCKNLK----TLPSSLCKL-KSLEEICLTGSAIE-----ELPSPIECLSALCVLDLGDCKSL  137 (463)
Q Consensus        71 ~~i~~l~---~L~~L~l~~c~~l~----~lp~~l~~l-~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l  137 (463)
                      ..+..+.   +|++|++++|....    .+...+..+ ++|+.|++++|.++     .++..+..+++|++|++++|..-
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            3344444   49999999986442    233456667 89999999999987     34455677789999999998733


Q ss_pred             C----cCcccCCCCCCccEEEeeCCCCCC-----cccccCCcccccccccccccccc--cchhhh----CCCCccEeccc
Q 012450          138 K----SLKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFER--IPESII----RLSKLSSLLVS  202 (463)
Q Consensus       138 ~----~l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~--lp~~l~----~l~~L~~L~L~  202 (463)
                      .    .++..+..+++|+.|++++|.+.+     +...+..+++|++|++++|.++.  +.....    ..+.|++|+++
T Consensus       179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~  258 (319)
T cd00116         179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS  258 (319)
T ss_pred             hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence            2    233334556799999999998874     44567788999999999998863  221112    24799999999


Q ss_pred             ccccc--------ccCCCCCCCccEeeccCc
Q 012450          203 YCERL--------QSLPKLPCNLYWLDAQHC  225 (463)
Q Consensus       203 ~c~~l--------~~l~~l~~~L~~L~i~~c  225 (463)
                      +|..-        +.++.. ++|++++++++
T Consensus       259 ~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N  288 (319)
T cd00116         259 CNDITDDGAKDLAEVLAEK-ESLLELDLRGN  288 (319)
T ss_pred             CCCCCcHHHHHHHHHHhcC-CCccEEECCCC
Confidence            99532        122333 57888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.29  E-value=7.4e-13  Score=145.10  Aligned_cols=228  Identities=28%  Similarity=0.370  Sum_probs=163.4

Q ss_pred             CCCCcceeecccccC-cCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450            3 HHGKLNQIIMAACNI-FTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLL   80 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~-l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~   80 (463)
                      .+++|++|-+.++.. +..++ ...+..++.|++|||++|..+..+|. ++.+-+|++|+++++.++.+|.++++|++|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence            467889999988653 56653 44588899999999999999999999 9999999999999999999999999999999


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCcc----EE
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT----YL  153 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~----~L  153 (463)
                      +|++..+..+..+|..+..+.+|++|.+......   ..-..+.++.+|+.+.......  .+-..+..+..|.    .+
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l  699 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSL  699 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhh
Confidence            9999998888888877778999999999876532   1223345666666666654332  1111122222222    33


Q ss_pred             EeeCCCCCCcccccCCcccccccccccccccccch-h-----hhC-CCCccEeccccccccccCC--CCCCCccEeeccC
Q 012450          154 YLTDCAITELPESLGLLSSLEELYLERNNFERIPE-S-----IIR-LSKLSSLLVSYCERLQSLP--KLPCNLYWLDAQH  224 (463)
Q Consensus       154 ~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~-----l~~-l~~L~~L~L~~c~~l~~l~--~l~~~L~~L~i~~  224 (463)
                      .+.++.....+..+..+.+|+.|.+.+|.+..... .     ... ++++..+.+.+|..++.+.  ..+++|+.|.+.+
T Consensus       700 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~  779 (889)
T KOG4658|consen  700 SIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVS  779 (889)
T ss_pred             hhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEec
Confidence            33444444556667788888888888887643221 1     111 4466677777777777665  3578888888888


Q ss_pred             ccccccccc
Q 012450          225 CTTLESLSG  233 (463)
Q Consensus       225 c~~L~~l~~  233 (463)
                      |..++.+..
T Consensus       780 ~~~~e~~i~  788 (889)
T KOG4658|consen  780 CRLLEDIIP  788 (889)
T ss_pred             ccccccCCC
Confidence            887776543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=1.1e-13  Score=138.75  Aligned_cols=209  Identities=26%  Similarity=0.414  Sum_probs=167.0

Q ss_pred             eecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCC
Q 012450           10 IIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK   88 (463)
Q Consensus        10 L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~   88 (463)
                      |.|++ ..+++.+....-..+.--...||+. +....+|. +..+..|+.+.|..|.+..+|..+.++..|.+|+++.| 
T Consensus        55 l~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-  131 (722)
T KOG0532|consen   55 LLLSG-RRLKEFPRGAASYDLTDTVFADLSR-NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-  131 (722)
T ss_pred             ccccc-chhhcCCCccccccccchhhhhccc-cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-
Confidence            45555 5566664333333455556677887 45677777 77788899999999999999999999999999999985 


Q ss_pred             CCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccC
Q 012450           89 NLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLG  168 (463)
Q Consensus        89 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~  168 (463)
                      .+..+|..++.++ |+.|-+++|+++.+|..++.+..|..|+.+.|. +..+|..+.++.+|+.|.+..|++..+|..+.
T Consensus       132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~  209 (722)
T KOG0532|consen  132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC  209 (722)
T ss_pred             hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence            5778888888775 899999999999999999989999999999876 67788889999999999999999999998888


Q ss_pred             CcccccccccccccccccchhhhCCCCccEeccccccccccCCC-C-----CCCccEeeccCc
Q 012450          169 LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-L-----PCNLYWLDAQHC  225 (463)
Q Consensus       169 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-l-----~~~L~~L~i~~c  225 (463)
                      .+ .|..||+++|++..||-.+.+|+.|++|.|.+|+ |++=|. +     ---.++|++.-|
T Consensus       210 ~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  210 SL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            44 5889999999999999999999999999999885 444332 1     112467777777

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.27  E-value=3e-13  Score=130.18  Aligned_cols=204  Identities=25%  Similarity=0.309  Sum_probs=145.4

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeec-cCCCccCcc-ccCCCCccE
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG-TAIEELPSS-IGCLSRLLE   81 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~-~~i~~lp~~-i~~l~~L~~   81 (463)
                      .-.+|+|.. +.++.+| +..|+.+++|+.|||++| .+..+..  +..+++|..|.+.+ |+|+.+|.. ++.|..|+.
T Consensus        68 ~tveirLdq-N~I~~iP-~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   68 ETVEIRLDQ-NQISSIP-PGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             cceEEEecc-CCcccCC-hhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            345677777 6788886 677888888888888884 5555543  77888888877777 788888876 677888888


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCc---------------------
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKS---------------------  139 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~---------------------  139 (463)
                      |.+.-|..--...+.+..+++|..|.+..|.+..++. .+..+.+++.+.+..+...-.                     
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            8877654333344567788888888888888887776 667777777776655441111                     


Q ss_pred             --------------------------C--------------c-ccCCCCCCccEEEeeCCCCCCc-ccccCCcccccccc
Q 012450          140 --------------------------L--------------K-LPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELY  177 (463)
Q Consensus       140 --------------------------l--------------~-~~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~  177 (463)
                                                +              | ..+.++++|++|+|++|+++.+ +.++.....+++|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence                                      0              0 0145678888888888888884 45677888888888


Q ss_pred             cccccccccc-hhhhCCCCccEeccccccccccCCC
Q 012450          178 LERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK  212 (463)
Q Consensus       178 Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~  212 (463)
                      |..|++..+. ..+.++..|+.|+|++|+.-.--|.
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            8888887655 3567788888888888754333333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.24  E-value=5.6e-12  Score=128.40  Aligned_cols=171  Identities=35%  Similarity=0.490  Sum_probs=78.1

Q ss_pred             CcCccEEeeecCCCCCCCCC-CCCCC-CccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEE
Q 012450           30 LNKLVILNLSGCSKLKSLPE-ISSAG-NIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC  107 (463)
Q Consensus        30 l~~L~~L~L~~c~~l~~lp~-l~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  107 (463)
                      ++.++.|++.+ ..+.+++. ...+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|+
T Consensus       115 ~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         115 LTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ccceeEEecCC-cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence            34444444444 33444444 33332 455555555555544444445555555555443 2344444333444555555


Q ss_pred             EECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccc
Q 012450          108 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP  187 (463)
Q Consensus       108 l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp  187 (463)
                      +++|.+..+|..+....+|.+|.++++... ..+..+.++..+..|.+.++++..++..++.+++|+.|++++|.++.++
T Consensus       193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         193 LSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             ccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence            555555555444444444555555444311 1222244444444444444444444444444444555555555544444


Q ss_pred             hhhhCCCCccEeccccc
Q 012450          188 ESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       188 ~~l~~l~~L~~L~L~~c  204 (463)
                      . +..+.+|+.|+++++
T Consensus       272 ~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         272 S-LGSLTNLRELDLSGN  287 (394)
T ss_pred             c-ccccCccCEEeccCc
Confidence            3 444444555555444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.13  E-value=1.3e-12  Score=125.97  Aligned_cols=202  Identities=23%  Similarity=0.329  Sum_probs=154.1

Q ss_pred             CCCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCC
Q 012450            1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLS   77 (463)
Q Consensus         1 l~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~   77 (463)
                      ++.+++|++|||++ +.++.+. |..|.+++.|..|-+.++++++++|.  ++.+..|+.|.+.-|++.-++.. +..++
T Consensus        87 F~~l~~LRrLdLS~-N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   87 FKTLHRLRRLDLSK-NNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP  164 (498)
T ss_pred             ccchhhhceecccc-cchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence            36789999999999 6777775 88999999999999999899999998  88888888888888888755443 67788


Q ss_pred             CccEEeeecCCCCCccch-hcCCCCCCcEEEEECCC--------------------------------------------
Q 012450           78 RLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSA--------------------------------------------  112 (463)
Q Consensus        78 ~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~--------------------------------------------  112 (463)
                      +|..|.+.++ ....++. .+..+.+++.+.+..|.                                            
T Consensus       165 ~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k  243 (498)
T KOG4237|consen  165 SLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARK  243 (498)
T ss_pred             hcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhh
Confidence            8888888774 3444544 45555555555544311                                            


Q ss_pred             ----CccCC---------c------cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc-cccCCccc
Q 012450          113 ----IEELP---------S------PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSS  172 (463)
Q Consensus       113 ----i~~lp---------~------~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~  172 (463)
                          .+.+|         .      -+..+++|+.|++++|..-..-+..+.++..++.|.|..|++..+. ..+.++..
T Consensus       244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~  323 (498)
T KOG4237|consen  244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG  323 (498)
T ss_pred             hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence                01111         1      2467899999999998855555667889999999999999988753 34678999


Q ss_pred             cccccccccccccc-chhhhCCCCccEecccccc
Q 012450          173 LEELYLERNNFERI-PESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       173 L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~  205 (463)
                      |+.|+|.+|+++.+ |..+..+.+|.+|.+-.|+
T Consensus       324 L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  324 LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             ceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            99999999999854 5677888899999887664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=2.4e-11  Score=123.77  Aligned_cols=183  Identities=31%  Similarity=0.417  Sum_probs=156.4

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCc-CccEEeeecCCCCCCCC-CCCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLN-KLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAIEELPSSIGCLSRLL   80 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~-~L~~L~L~~c~~l~~lp-~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~   80 (463)
                      ..++++.|++.+ +.++++  +.....+. +|+.|++++ +.+..+| .+..+++|+.|++++|.+..+|...+.+++|+
T Consensus       114 ~~~~l~~L~l~~-n~i~~i--~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         114 ELTNLTSLDLDN-NNITDI--PPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             cccceeEEecCC-cccccC--ccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence            346788999988 788888  66677774 999999999 5788886 49999999999999999999999877899999


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCC
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI  160 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l  160 (463)
                      .|+++++ .+..+|..+..+..|++|.+++|.+...+..+..+.++..|.+.++. +..++..+..+++|+.|++++|.+
T Consensus       190 ~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         190 NLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             heeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceeccccccc
Confidence            9999995 67888887767777999999999888888888999999999977765 555566688899999999999999


Q ss_pred             CCcccccCCcccccccccccccccccchhhhC
Q 012450          161 TELPESLGLLSSLEELYLERNNFERIPESIIR  192 (463)
Q Consensus       161 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~  192 (463)
                      ++++. ++.+.+|+.|+++++.+..++.....
T Consensus       268 ~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         268 SSISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ccccc-ccccCccCEEeccCccccccchhhhc
Confidence            99887 89999999999999998766544433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=9.4e-12  Score=116.08  Aligned_cols=125  Identities=25%  Similarity=0.224  Sum_probs=76.4

Q ss_pred             CCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEee
Q 012450           77 SRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT  156 (463)
Q Consensus        77 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~  156 (463)
                      +.|++|++++| .++.+.+++.-+|.++.|+++.|.+..+.. ++.+.+|+.||+++|. +..+...-.++.+.+.|.|+
T Consensus       284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence            45666666663 345555555566666667776666666644 5666666777776654 44444333455566667777


Q ss_pred             CCCCCCcccccCCcccccccccccccccccc--hhhhCCCCccEecccccc
Q 012450          157 DCAITELPESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       157 ~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~  205 (463)
                      +|.+.++ +.++.+-+|..||+++|++..+.  ..|+++|.|+.|.+.+|+
T Consensus       361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            6666554 24556666677777777665433  356667777777776664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=2.5e-12  Score=129.07  Aligned_cols=190  Identities=23%  Similarity=0.328  Sum_probs=165.5

Q ss_pred             ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeec
Q 012450            8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD   86 (463)
Q Consensus         8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~   86 (463)
                      ...||+. +.+.++  |..+..+-.|+.+.|.. +.+..+|. +..+..|+.|+|+.|.+..+|..+..|+ |+.|.+++
T Consensus        78 ~~aDlsr-NR~~el--p~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSR-NRFSEL--PEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhccc-cccccC--chHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            4567777 667888  78888899999999998 46777777 9999999999999999999999998887 99999998


Q ss_pred             CCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccc
Q 012450           87 CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES  166 (463)
Q Consensus        87 c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~  166 (463)
                       ++++.+|..++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|. +..+|..+..+ .|..||++.|++..+|-.
T Consensus       153 -Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNkis~iPv~  229 (722)
T KOG0532|consen  153 -NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNKISYLPVD  229 (722)
T ss_pred             -CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCceeecchh
Confidence             578999999999999999999999999999999999999999999876 66677767644 589999999999999999


Q ss_pred             cCCcccccccccccccccccchhhh---CCCCccEecccccc
Q 012450          167 LGLLSSLEELYLERNNFERIPESII---RLSKLSSLLVSYCE  205 (463)
Q Consensus       167 l~~l~~L~~L~Ls~n~l~~lp~~l~---~l~~L~~L~L~~c~  205 (463)
                      +.++..|++|-|.+|.+++-|..|.   +..-.++|++.-|+
T Consensus       230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            9999999999999999998886553   34456788888884

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=1.8e-11  Score=119.53  Aligned_cols=176  Identities=19%  Similarity=0.201  Sum_probs=86.8

Q ss_pred             CCcCccEEeeecCCCCCCCC---CCCCCCCccEEEeeccCCC---ccCccccCCCCccEEeeecCCCCCccchh-cCCCC
Q 012450           29 HLNKLVILNLSGCSKLKSLP---EISSAGNIEKILLDGTAIE---ELPSSIGCLSRLLELNLGDCKNLKTLPSS-LCKLK  101 (463)
Q Consensus        29 ~l~~L~~L~L~~c~~l~~lp---~l~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~lp~~-l~~l~  101 (463)
                      ++++|+.+.|.+| .+...+   ....+++++.|+|++|-+.   .+-..+..|++|+.|+++.|...--..+. -..++
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4555555555553 333333   1445566666666665433   22223445566666666654322111111 11345


Q ss_pred             CCcEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc--cccCCcccccccc
Q 012450          102 SLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELY  177 (463)
Q Consensus       102 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p--~~l~~l~~L~~L~  177 (463)
                      +|+.|.+++|+++  .+...+..+++|..|++.+|..+..-......+..|+.|+|++|++.+++  ...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            5666666666655  23333445566666666665422222222333455666666666665544  3455666666666


Q ss_pred             cccccccc--cchh-----hhCCCCccEecccccc
Q 012450          178 LERNNFER--IPES-----IIRLSKLSSLLVSYCE  205 (463)
Q Consensus       178 Ls~n~l~~--lp~~-----l~~l~~L~~L~L~~c~  205 (463)
                      ++.|.+.+  +|+.     ...+++|++|++..|+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            66665542  2222     2345666666666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=1.5e-10  Score=108.18  Aligned_cols=124  Identities=21%  Similarity=0.240  Sum_probs=93.2

Q ss_pred             CCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccc
Q 012450           98 CKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELY  177 (463)
Q Consensus        98 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~  177 (463)
                      -.++.|++|++++|.|+.+..++.-.+.++.|+++.|.. ..+.. +..+++|+.|+|++|.++++..|-..+.+++.|.
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-RTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccce-eeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            345678888999999988888888888899999988774 33333 7778888999999998888777777788888899


Q ss_pred             cccccccccchhhhCCCCccEecccccc-----ccccCCCCCCCccEeeccCc
Q 012450          178 LERNNFERIPESIIRLSKLSSLLVSYCE-----RLQSLPKLPCNLYWLDAQHC  225 (463)
Q Consensus       178 Ls~n~l~~lp~~l~~l~~L~~L~L~~c~-----~l~~l~~l~~~L~~L~i~~c  225 (463)
                      |++|.+.++. .+.++-+|..||+++|.     .++.|..+| .|+.+.+.+.
T Consensus       359 La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~N  409 (490)
T KOG1259|consen  359 LAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGN  409 (490)
T ss_pred             hhhhhHhhhh-hhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCC
Confidence            9998888776 67888888889888875     233444444 3455555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1e-10  Score=114.25  Aligned_cols=200  Identities=21%  Similarity=0.209  Sum_probs=146.0

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC----CCCCCCccEEEeeccCCCccCcc--ccCC
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE----ISSAGNIEKILLDGTAIEELPSS--IGCL   76 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~----l~~l~~L~~L~L~~~~i~~lp~~--i~~l   76 (463)
                      ++.+|+++.|.+| .+...+.......|++++.|||++| .+..+-.    ...+|+|+.|+|+.|.+....++  -..+
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            5678888999884 3444421246778999999999995 3333322    56799999999999988744333  2467


Q ss_pred             CCccEEeeecCCCCC-ccchhcCCCCCCcEEEEECCC-CccCCccCCCCCCccEEecCCCCCCCcCc--ccCCCCCCccE
Q 012450           77 SRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLK--LPFDGLYSLTY  152 (463)
Q Consensus        77 ~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~  152 (463)
                      +.|+.|.++.|.... .+...+..+|+|+.|.+.+|. +..-......+..|+.|+|++|..+. ++  ...+.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence            899999999996542 233445679999999999984 33323344567889999999988554 33  23678899999


Q ss_pred             EEeeCCCCCC--cccc-----cCCcccccccccccccccccc--hhhhCCCCccEecccccc
Q 012450          153 LYLTDCAITE--LPES-----LGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       153 L~L~~~~l~~--~p~~-----l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~  205 (463)
                      |+++.|.+.+  +|+.     ...+++|+.|++..|++..++  ..+..+++|+.|.+..+.
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            9999999987  4443     467899999999999997665  355667778888776653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=7.1e-10  Score=98.84  Aligned_cols=61  Identities=33%  Similarity=0.434  Sum_probs=15.0

Q ss_pred             CCCCCccEEEeeCCCCCCccccc-CCcccccccccccccccccc--hhhhCCCCccEecccccc
Q 012450          145 DGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       145 ~~l~~L~~L~L~~~~l~~~p~~l-~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~  205 (463)
                      ..++.|+.|++++|.++++...+ ..+++|++|++++|++..+.  ..+..+++|+.|++.+|+
T Consensus        61 ~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   61 PGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             ---TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             cChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            33444444444444444433222 13444444444444443221  233344444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.89  E-value=5.9e-10  Score=99.35  Aligned_cols=136  Identities=29%  Similarity=0.353  Sum_probs=52.6

Q ss_pred             ccCCCccCccccCCCCccEEeeecCCCCCccchhcC-CCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCc
Q 012450           63 GTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLC-KLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK  141 (463)
Q Consensus        63 ~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~  141 (463)
                      .+.|+..+. +.+..++++|+|++|. +..+ +.++ .+.+|+.|++++|.|+.+. .+..++.|+.|++++|. ++.+.
T Consensus         6 ~~~i~~~~~-~~n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~   80 (175)
T PF14580_consen    6 ANMIEQIAQ-YNNPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS   80 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred             ccccccccc-cccccccccccccccc-cccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence            344555554 4566789999999964 4444 3455 5889999999999999886 57889999999999987 55665


Q ss_pred             ccC-CCCCCccEEEeeCCCCCCcc--cccCCcccccccccccccccccc----hhhhCCCCccEecccc
Q 012450          142 LPF-DGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERIP----ESIIRLSKLSSLLVSY  203 (463)
Q Consensus       142 ~~l-~~l~~L~~L~L~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~~lp----~~l~~l~~L~~L~L~~  203 (463)
                      ..+ ..+++|+.|++++|++.++-  ..+..+++|+.|+|.+|.++..+    ..+..+|+|+.||-..
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            434 36899999999999988742  45678999999999999886443    3456677777776554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.88  E-value=1.7e-09  Score=118.96  Aligned_cols=129  Identities=27%  Similarity=0.332  Sum_probs=95.6

Q ss_pred             CcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccC--CCccCcc-ccCCCCccEEeeecCCCCCccchhcCCCCCCcEE
Q 012450           30 LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTA--IEELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEI  106 (463)
Q Consensus        30 l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~--i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  106 (463)
                      ....+.+.+.+ +.+..++.-...++|+.|-+.++.  +..++.. +..++.|+.||+++|..+..+|+.|+.+-+|+.|
T Consensus       522 ~~~~rr~s~~~-~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  522 WNSVRRMSLMN-NKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hhheeEEEEec-cchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            34556666655 445555554455578888887774  5555554 5678888888888888888888888888888888


Q ss_pred             EEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450          107 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA  159 (463)
Q Consensus       107 ~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~  159 (463)
                      +++++.+..+|..++++..|.+|++..+..+..++.....+++|++|.+....
T Consensus       601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            88888888888888888888888888877777776666668888888876654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.74  E-value=2.6e-08  Score=99.30  Aligned_cols=162  Identities=22%  Similarity=0.245  Sum_probs=104.3

Q ss_pred             ccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECC-CCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCcc
Q 012450           73 IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT  151 (463)
Q Consensus        73 i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~  151 (463)
                      +..+.++..|++++| .++.+|.   -..+|++|.++++ .++.+|..+  ..+|++|++++|..+..+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            445788999999998 7888883   2446999999874 556777654  36899999999987877764      577


Q ss_pred             EEEeeCCCCCCcccccCCcccccccccccccc---cccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCc--c
Q 012450          152 YLYLTDCAITELPESLGLLSSLEELYLERNNF---ERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC--T  226 (463)
Q Consensus       152 ~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l---~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c--~  226 (463)
                      .|++..+....++.   -.++|+.|.+.+++.   ..+|..  -.++|+.|++++|..+..-+.+|.+|+.|++..+  .
T Consensus       116 ~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~  190 (426)
T PRK15386        116 SLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKT  190 (426)
T ss_pred             eEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEecccccc
Confidence            78887665443221   123577777755432   122211  1258999999999866543458999999998653  4


Q ss_pred             cccccccCCCCceeEEEeecCccchHH
Q 012450          227 TLESLSGLFSSYKCVFFYLNENFKLDR  253 (463)
Q Consensus       227 ~L~~l~~~~~~~~~~~~~~~~c~~l~~  253 (463)
                      .++.....++..- .+.+.+ |.+++.
T Consensus       191 sLeI~~~sLP~nl-~L~f~n-~lkL~~  215 (426)
T PRK15386        191 TWNISFEGFPDGL-DIDLQN-SVLLSP  215 (426)
T ss_pred             cccCccccccccc-Eechhh-hcccCH
Confidence            4433333332211 233445 777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.69  E-value=5e-08  Score=97.34  Aligned_cols=54  Identities=24%  Similarity=0.265  Sum_probs=25.3

Q ss_pred             ccccccccccccccccchhhhCCCCccEecccccc--ccc-cCCCCCCCccEeeccCccc
Q 012450          171 SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE--RLQ-SLPKLPCNLYWLDAQHCTT  227 (463)
Q Consensus       171 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~--~l~-~l~~l~~~L~~L~i~~c~~  227 (463)
                      ++|++|++++|....+|..+.  .+|+.|.++.+.  .+. ....+|+++ .|++.+|-.
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk  212 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL  212 (426)
T ss_pred             CcccEEEecCCCcccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence            455666665555444343222  356666655432  111 112345555 666666533

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.61  E-value=5.5e-09  Score=107.07  Aligned_cols=192  Identities=29%  Similarity=0.363  Sum_probs=128.1

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      +..++.+.+.. +.++++  ...+..+.+|+.|++.+ +.+..+.. +..+++|++|++++|.|+.+.. +..++.|+.|
T Consensus        71 l~~l~~l~l~~-n~i~~~--~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQ-NLIAKI--LNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccch-hhhhhh--hcccccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccc-hhhccchhhh
Confidence            44556666665 445553  34577788888888887 56777777 7888888888888888887754 5677778888


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT  161 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~  161 (463)
                      ++.+|. +..+. .+..+++|+.+++++|.+..+... ...+.+|+.+.+.++.... +. .+..+..+..+++..+.++
T Consensus       146 ~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~-i~-~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  146 NLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE-IE-GLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc-cc-chHHHHHHHHhhcccccce
Confidence            888853 44443 355588888888888888877654 4677888888888776332 21 1333344445566666665


Q ss_pred             CcccccCCccc--ccccccccccccccchhhhCCCCccEecccccc
Q 012450          162 ELPESLGLLSS--LEELYLERNNFERIPESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       162 ~~p~~l~~l~~--L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~  205 (463)
                      .+- .+..+..  |+.+++++|.+..++..+..+..+..|++..++
T Consensus       222 ~~~-~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  222 KLE-GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             ecc-CcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence            532 1223333  777888888777665566667777777777653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.58  E-value=6e-09  Score=106.81  Aligned_cols=170  Identities=28%  Similarity=0.338  Sum_probs=100.1

Q ss_pred             CCcCccEEeeecCCCCCC-CCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEE
Q 012450           29 HLNKLVILNLSGCSKLKS-LPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC  107 (463)
Q Consensus        29 ~l~~L~~L~L~~c~~l~~-lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  107 (463)
                      .+..++.+++..+ .+.. ...+..+.+|+.|++.+|.|+.+...+..+++|++|++++| .++.+. .+..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhhe
Confidence            3455555555553 3333 22366677777777777777766655666777777777774 344442 355566677777


Q ss_pred             EECCCCccCCccCCCCCCccEEecCCCCCCCcCccc-CCCCCCccEEEeeCCCCCCcccccCCccccccccccccccccc
Q 012450          108 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI  186 (463)
Q Consensus       108 l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l  186 (463)
                      +++|.|+.+. .+..+..|+.+++++|.. ..+... ...+.+|+.+.+.+|.+..+. .+..+..+..+++..|.++.+
T Consensus       147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  147 LSGNLISDIS-GLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             eccCcchhcc-CCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec
Confidence            7777777664 344467777777777653 333321 356667777777777666542 234444555556666666543


Q ss_pred             chhhhCCCC--ccEecccccc
Q 012450          187 PESIIRLSK--LSSLLVSYCE  205 (463)
Q Consensus       187 p~~l~~l~~--L~~L~L~~c~  205 (463)
                      - .+..+..  |+.++++++.
T Consensus       224 ~-~l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  224 E-GLNELVMLHLRELYLSGNR  243 (414)
T ss_pred             c-CcccchhHHHHHHhcccCc
Confidence            2 1222232  6677777664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.57  E-value=9.7e-09  Score=98.13  Aligned_cols=180  Identities=18%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             CCCCcceeecccccCcCCCC--CcccccCCcCccEEeeecCCCCC----CCCC--------CCCCCCccEEEeeccCCC-
Q 012450            3 HHGKLNQIIMAACNIFTKTP--NPSLIQHLNKLVILNLSGCSKLK----SLPE--------ISSAGNIEKILLDGTAIE-   67 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~--~~~~~~~l~~L~~L~L~~c~~l~----~lp~--------l~~l~~L~~L~L~~~~i~-   67 (463)
                      .+..+++|+|+++..-++..  ....+.+.++|+..++++ -..+    .+|.        +-.+++|++|+|+.|.+. 
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            34567777777754333220  023344455666666554 1211    1221        223456666666666544 


Q ss_pred             -c---cCccccCCCCccEEeeecCCCCCcc-------------chhcCCCCCCcEEEEECCCCccCC-----ccCCCCCC
Q 012450           68 -E---LPSSIGCLSRLLELNLGDCKNLKTL-------------PSSLCKLKSLEEICLTGSAIEELP-----SPIECLSA  125 (463)
Q Consensus        68 -~---lp~~i~~l~~L~~L~l~~c~~l~~l-------------p~~l~~l~~L~~L~l~~~~i~~lp-----~~i~~l~~  125 (463)
                       .   +-.-+..+..|++|.|.+|..-..-             ..-+..-+.|+.+...+|++..-+     ..+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence             1   1122444566666666655322110             111233445555555555544221     12333444


Q ss_pred             ccEEecCCCCCCCc----CcccCCCCCCccEEEeeCCCCCC-----cccccCCcccccccccccccc
Q 012450          126 LCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       126 L~~L~l~~c~~l~~----l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l  183 (463)
                      |+.+.+..|.....    +...+..+++|+.|+|.+|-++.     +...+..+++|+.|++++|.+
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence            55555444432111    11123444555555555554432     233344444555555555544

>PLN03150 hypothetical protein; Provisional

Probab=98.53  E-value=1.3e-07  Score=101.54  Aligned_cols=109  Identities=24%  Similarity=0.333  Sum_probs=62.4

Q ss_pred             CcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCccccccccccc
Q 012450          103 LEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLER  180 (463)
Q Consensus       103 L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~  180 (463)
                      ++.|+|+++.+. .+|..+..+++|+.|++++|.....+|..+..+++|+.|+|++|++.. +|..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            455566666554 455556666666666666655444555556666666666666666654 555666666666666666


Q ss_pred             cccc-ccchhhhCC-CCccEeccccccccccCC
Q 012450          181 NNFE-RIPESIIRL-SKLSSLLVSYCERLQSLP  211 (463)
Q Consensus       181 n~l~-~lp~~l~~l-~~L~~L~L~~c~~l~~l~  211 (463)
                      |+++ .+|..+..+ .++..+++.+|..+...|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            6654 455555432 344555555555444433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.49  E-value=2.3e-09  Score=104.55  Aligned_cols=226  Identities=19%  Similarity=0.226  Sum_probs=132.5

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC---CCCCCCccEEEeecc-CCCc--cCccccCCCCc
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGT-AIEE--LPSSIGCLSRL   79 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~---l~~l~~L~~L~L~~~-~i~~--lp~~i~~l~~L   79 (463)
                      .|+.|.+.||.....-+.-....++++++.|.+.+|.++++-.-   -..+++|++|++..| .++.  +......+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46677777776666554345556677777777777766554332   234667777777663 4442  22223456677


Q ss_pred             cEEeeecCCCCCc--cchhcCCCCCCcEEEEECCC---------------------------Ccc--CCccCCCCCCccE
Q 012450           80 LELNLGDCKNLKT--LPSSLCKLKSLEEICLTGSA---------------------------IEE--LPSPIECLSALCV  128 (463)
Q Consensus        80 ~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~---------------------------i~~--lp~~i~~l~~L~~  128 (463)
                      ++|++++|..+..  +-....+++.++.+.+.||.                           ++.  +...-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            7777777665543  11122344445555444421                           110  0001124567777


Q ss_pred             EecCCCCCCCcCcc--cCCCCCCccEEEeeCCC-CCC--cccccCCccccccccccccccc---ccchhhhCCCCccEec
Q 012450          129 LDLGDCKSLKSLKL--PFDGLYSLTYLYLTDCA-ITE--LPESLGLLSSLEELYLERNNFE---RIPESIIRLSKLSSLL  200 (463)
Q Consensus       129 L~l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~-l~~--~p~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~  200 (463)
                      |+.++|..+++.+.  -..+..+|+.|.+++|+ +++  +...-.+++.|+.+++.++...   ++-..-.+++.|+.|.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            78777776655332  13456788899998885 333  3333457888999999888642   2444445688999999


Q ss_pred             cccccccccCC--------CCCCCccEeeccCccccccc
Q 012450          201 VSYCERLQSLP--------KLPCNLYWLDAQHCTTLESL  231 (463)
Q Consensus       201 L~~c~~l~~l~--------~l~~~L~~L~i~~c~~L~~l  231 (463)
                      +++|..+++..        .....++.+.+.+|+.++.-
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~  417 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA  417 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence            99998766541        12245666777777765543

>PLN03150 hypothetical protein; Provisional

Probab=98.43  E-value=4.4e-07  Score=97.61  Aligned_cols=107  Identities=23%  Similarity=0.308  Sum_probs=88.6

Q ss_pred             CccEEEeeccCCC-ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCccCCCCCCccEEecC
Q 012450           55 NIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLG  132 (463)
Q Consensus        55 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~  132 (463)
                      .++.|+|+++.++ .+|..++.+++|+.|+|++|.....+|..++.+++|+.|++++|.++ .+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3778899998887 77888899999999999998777788888999999999999999987 678889999999999999


Q ss_pred             CCCCCCcCcccCCCC-CCccEEEeeCCCCC
Q 012450          133 DCKSLKSLKLPFDGL-YSLTYLYLTDCAIT  161 (463)
Q Consensus       133 ~c~~l~~l~~~l~~l-~~L~~L~L~~~~l~  161 (463)
                      +|.....+|..+... .++..+++.+|...
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccc
Confidence            988777788766543 45677888887543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=2.2e-09  Score=100.43  Aligned_cols=172  Identities=21%  Similarity=0.221  Sum_probs=102.6

Q ss_pred             CccEEeeecCCCCCC--CCC-CCCCCCccEEEeeccCCC-ccCccccCCCCccEEeeecCCCCCccc--hhcCCCCCCcE
Q 012450           32 KLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEE  105 (463)
Q Consensus        32 ~L~~L~L~~c~~l~~--lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~  105 (463)
                      .|+.|||+. ..++.  +-. ++.+.+|+.|.|.|+.+. .+...|..-.+|+.|+++.|+.+++..  -.+.+++.|..
T Consensus       186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            467777765 23321  111 455667777777777665 344446666777777777777666543  23556777777


Q ss_pred             EEEECCCCcc--CCccCC-CCCCccEEecCCCCCCC---cCcccCCCCCCccEEEeeCCCC-CC-cccccCCcccccccc
Q 012450          106 ICLTGSAIEE--LPSPIE-CLSALCVLDLGDCKSLK---SLKLPFDGLYSLTYLYLTDCAI-TE-LPESLGLLSSLEELY  177 (463)
Q Consensus       106 L~l~~~~i~~--lp~~i~-~l~~L~~L~l~~c~~l~---~l~~~l~~l~~L~~L~L~~~~l-~~-~p~~l~~l~~L~~L~  177 (463)
                      |+++.|.+..  +...+. --++|+.|+++||...-   .+..-...+++|..|||++|.. +. .-..+..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            7777776541  111111 12467777777764311   1122234677888888888743 32 445567788888888


Q ss_pred             ccccccc--ccchhhhCCCCccEeccccc
Q 012450          178 LERNNFE--RIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       178 Ls~n~l~--~lp~~l~~l~~L~~L~L~~c  204 (463)
                      ++.|-.-  ..--.+...+.|.+|++.+|
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            8888421  11113566788999998887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.39  E-value=3e-08  Score=94.85  Aligned_cols=202  Identities=21%  Similarity=0.241  Sum_probs=143.9

Q ss_pred             CCCCCcceeecccccCcC----CCC-----CcccccCCcCccEEeeecCCCCCCCCC-----CCCCCCccEEEeeccCCC
Q 012450            2 QHHGKLNQIIMAACNIFT----KTP-----NPSLIQHLNKLVILNLSGCSKLKSLPE-----ISSAGNIEKILLDGTAIE   67 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~----~~~-----~~~~~~~l~~L~~L~L~~c~~l~~lp~-----l~~l~~L~~L~L~~~~i~   67 (463)
                      ...++|++.++++ -...    +++     ....+..+++|++|+||+|-.-...+.     +..+..|++|+|.+|.+.
T Consensus        55 ~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   55 ASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             hhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            3456778888775 1111    221     023455778999999999744333332     677999999999999876


Q ss_pred             cc--------------CccccCCCCccEEeeecCCCCCc-----cchhcCCCCCCcEEEEECCCCc-----cCCccCCCC
Q 012450           68 EL--------------PSSIGCLSRLLELNLGDCKNLKT-----LPSSLCKLKSLEEICLTGSAIE-----ELPSPIECL  123 (463)
Q Consensus        68 ~l--------------p~~i~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~~~i~-----~lp~~i~~l  123 (463)
                      ..              ..-+++-++|+.+...+|. +..     +...+...+.|+.+.++.|.|.     -+...+..+
T Consensus       134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~  212 (382)
T KOG1909|consen  134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC  212 (382)
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC
Confidence            22              1224567889999998854 443     3345677899999999999875     234457889


Q ss_pred             CCccEEecCCCCCCCc----CcccCCCCCCccEEEeeCCCCCC-----ccccc-CCccccccccccccccc-----ccch
Q 012450          124 SALCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITE-----LPESL-GLLSSLEELYLERNNFE-----RIPE  188 (463)
Q Consensus       124 ~~L~~L~l~~c~~l~~----l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l-~~l~~L~~L~Ls~n~l~-----~lp~  188 (463)
                      ++|+.||+.+|..-..    +...+..+++|+.|++++|.+..     +-..+ ...|+|+.|.+.+|.++     .+-.
T Consensus       213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~  292 (382)
T KOG1909|consen  213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA  292 (382)
T ss_pred             CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence            9999999999873322    33346678899999999998875     22222 35789999999999885     3445


Q ss_pred             hhhCCCCccEecccccc
Q 012450          189 SIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       189 ~l~~l~~L~~L~L~~c~  205 (463)
                      .+...+.|..|+|++|.
T Consensus       293 ~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  293 CMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHhcchhhHHhcCCccc
Confidence            67778999999999994

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.33  E-value=1.3e-08  Score=99.43  Aligned_cols=222  Identities=20%  Similarity=0.267  Sum_probs=143.3

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC---CCCCCCccEEEeecc-CCCc--cCccccC
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGT-AIEE--LPSSIGC   75 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~---l~~l~~L~~L~L~~~-~i~~--lp~~i~~   75 (463)
                      ++|||++.|.+.+|.++++...-..-..+++|+.|++..|..++...-   ...+++|++|+++++ .|+.  +..-...
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            468899999999998887763233444678888888888877775432   346778888888875 3432  2222233


Q ss_pred             CCCccEEeee--------------------------cCCCCCccc--hhcCCCCCCcEEEEECCCC-c--cCCccCCCCC
Q 012450           76 LSRLLELNLG--------------------------DCKNLKTLP--SSLCKLKSLEEICLTGSAI-E--ELPSPIECLS  124 (463)
Q Consensus        76 l~~L~~L~l~--------------------------~c~~l~~lp--~~l~~l~~L~~L~l~~~~i-~--~lp~~i~~l~  124 (463)
                      +++++.+.++                          .|..++...  ..-..+..|+.|+.+++.- +  .+.....+..
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~  320 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH  320 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence            3444444444                          443333221  1123467788888877543 2  2223456789


Q ss_pred             CccEEecCCCCCCCcCcc--cCCCCCCccEEEeeCCCCCC---cccccCCcccccccccccccc-cc-----cchhhhCC
Q 012450          125 ALCVLDLGDCKSLKSLKL--PFDGLYSLTYLYLTDCAITE---LPESLGLLSSLEELYLERNNF-ER-----IPESIIRL  193 (463)
Q Consensus       125 ~L~~L~l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~l~~---~p~~l~~l~~L~~L~Ls~n~l-~~-----lp~~l~~l  193 (463)
                      +|+.|.+.+|+.+++.-.  .-.+++.|+.+++..|....   +-..-.+++.|+.|.+++|.. +.     +...-..+
T Consensus       321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~  400 (483)
T KOG4341|consen  321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL  400 (483)
T ss_pred             ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence            999999999998776432  23567899999999996542   444556899999999999864 22     23344567


Q ss_pred             CCccEeccccccccccCCCCCCCccEeeccCcccccc
Q 012450          194 SKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLES  230 (463)
Q Consensus       194 ~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~  230 (463)
                      ..|+.+.+++|+.+++-     .|+  ++..|+.|+.
T Consensus       401 ~~l~~lEL~n~p~i~d~-----~Le--~l~~c~~Ler  430 (483)
T KOG4341|consen  401 EGLEVLELDNCPLITDA-----TLE--HLSICRNLER  430 (483)
T ss_pred             cccceeeecCCCCchHH-----HHH--HHhhCcccce
Confidence            88999999999766541     222  2345666665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.29  E-value=4.5e-07  Score=66.32  Aligned_cols=58  Identities=34%  Similarity=0.452  Sum_probs=42.9

Q ss_pred             CCccEEEeeCCCCCCcc-cccCCcccccccccccccccccch-hhhCCCCccEecccccc
Q 012450          148 YSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       148 ~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~  205 (463)
                      ++|+.|++++|++..+| ..+..+++|++|++++|+++.++. .+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45777778877777766 356678888888888888877663 66778888888888774

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.27  E-value=7.8e-07  Score=65.01  Aligned_cols=57  Identities=26%  Similarity=0.487  Sum_probs=27.1

Q ss_pred             CccEEEeeccCCCccCc-cccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCC
Q 012450           55 NIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSA  112 (463)
Q Consensus        55 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~  112 (463)
                      +|++|++++|.++.+|. .+..+++|++|++++|. +..++ ..+.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555543 24445555555555432 23332 334455555555555443

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=2e-08  Score=94.06  Aligned_cols=150  Identities=19%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             ccEEEeeccCCC--ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCC-Ccc--CCccCCCCCCccEEe
Q 012450           56 IEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSA-IEE--LPSPIECLSALCVLD  130 (463)
Q Consensus        56 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~-i~~--lp~~i~~l~~L~~L~  130 (463)
                      |++|+|++..|+  .+...+..|.+|+.|.+.+...-..+-..+..-.+|+.|+++++. +++  +.-.+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            555555555554  333334455555555555543322333334444555555555532 221  111234445555555


Q ss_pred             cCCCCCCCcCcc-c-CCCCCCccEEEeeCCCC----CCcccccCCcccccccccccccc-c-ccchhhhCCCCccEeccc
Q 012450          131 LGDCKSLKSLKL-P-FDGLYSLTYLYLTDCAI----TELPESLGLLSSLEELYLERNNF-E-RIPESIIRLSKLSSLLVS  202 (463)
Q Consensus       131 l~~c~~l~~l~~-~-l~~l~~L~~L~L~~~~l----~~~p~~l~~l~~L~~L~Ls~n~l-~-~lp~~l~~l~~L~~L~L~  202 (463)
                      ++.|...+..-. . -+--++|+.|+|+|+.-    ..+..-...+++|.+|||++|.. + ..-..+.+++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            555442221100 0 01113445555555421    11222234455555555555532 2 222344555555555555


Q ss_pred             ccc
Q 012450          203 YCE  205 (463)
Q Consensus       203 ~c~  205 (463)
                      .|.
T Consensus       347 RCY  349 (419)
T KOG2120|consen  347 RCY  349 (419)
T ss_pred             hhc
Confidence            554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.14  E-value=7.4e-08  Score=99.85  Aligned_cols=16  Identities=38%  Similarity=0.677  Sum_probs=8.6

Q ss_pred             cccCCcCccEEeeecC
Q 012450           26 LIQHLNKLVILNLSGC   41 (463)
Q Consensus        26 ~~~~l~~L~~L~L~~c   41 (463)
                      .+..+.+|++|.|.+|
T Consensus       104 ~ifpF~sLr~LElrg~  119 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGC  119 (1096)
T ss_pred             eeccccceeeEEecCc
Confidence            3444555555555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.13  E-value=7.4e-08  Score=99.85  Aligned_cols=175  Identities=23%  Similarity=0.227  Sum_probs=120.0

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCC-cCccEEeeecC---------CCCCCCCCCCCCCCccEEEeeccCCCccCc
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHL-NKLVILNLSGC---------SKLKSLPEISSAGNIEKILLDGTAIEELPS   71 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l-~~L~~L~L~~c---------~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~   71 (463)
                      ..+..|+.|.|.+|..-+ .   .++..+ ..|+.|...+.         ...+++..-..-..|...+.+.|.+..+..
T Consensus       106 fpF~sLr~LElrg~~L~~-~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~  181 (1096)
T KOG1859|consen  106 FPFRSLRVLELRGCDLST-A---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE  181 (1096)
T ss_pred             ccccceeeEEecCcchhh-h---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence            467889999999987544 2   122222 23444443321         001111111123356777788889999999


Q ss_pred             cccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCcc
Q 012450           72 SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT  151 (463)
Q Consensus        72 ~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~  151 (463)
                      ++.-++.|+.|+|+.|+. .... .+..++.|++|||++|.+..+|..-..--+|..|.+++|. ++.+.. +.++.+|+
T Consensus       182 SLqll~ale~LnLshNk~-~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g-ie~LksL~  257 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKF-TKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG-IENLKSLY  257 (1096)
T ss_pred             HHHHHHHhhhhccchhhh-hhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhhh-HHhhhhhh
Confidence            999999999999999754 3333 6888999999999999999888643322348999999876 565554 77888999


Q ss_pred             EEEeeCCCCCCcc--cccCCccccccccccccccc
Q 012450          152 YLYLTDCAITELP--ESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       152 ~L~L~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~  184 (463)
                      .||+++|-+.+..  ..+..+..|+.|.|.||.+-
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999999776621  23566788999999998763

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=1e-05  Score=76.24  Aligned_cols=199  Identities=22%  Similarity=0.264  Sum_probs=121.9

Q ss_pred             CcCccEEeeecCCCCCCCCC----CCCCCCccEEEeeccCCC---ccCccccCCCCccEEeeecCCCCCccchhc-CCCC
Q 012450           30 LNKLVILNLSGCSKLKSLPE----ISSAGNIEKILLDGTAIE---ELPSSIGCLSRLLELNLGDCKNLKTLPSSL-CKLK  101 (463)
Q Consensus        30 l~~L~~L~L~~c~~l~~lp~----l~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l-~~l~  101 (463)
                      ...++.|-+.+| .+....+    -...+.++.|+|.+|.|+   ++-..+.+++.|++|+++.|..-..+ ..+ ....
T Consensus        44 ~ra~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~  121 (418)
T KOG2982|consen   44 LRALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLK  121 (418)
T ss_pred             ccchhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCccccc
Confidence            334445555554 2222222    234677888888888887   44445678888888888865432221 112 2456


Q ss_pred             CCcEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcC--------------------cc----------cCCCCCC
Q 012450          102 SLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSL--------------------KL----------PFDGLYS  149 (463)
Q Consensus       102 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l--------------------~~----------~l~~l~~  149 (463)
                      +|+.|-+.|+.+.  .+.+.+..++.++.|+++.|+ ++.+                    |.          ....+++
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            7888888887764  556666777777777777663 1110                    00          0113466


Q ss_pred             ccEEEeeCCCCCCc--ccccCCcccccccccccccccccc--hhhhCCCCccEeccccccccccCCCCCCCccEeeccCc
Q 012450          150 LTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC  225 (463)
Q Consensus       150 L~~L~L~~~~l~~~--p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c  225 (463)
                      +..+-+..|++.+.  -.....++.+.-|+|+.+++.++.  +.+.+++.|..|.+++++....+..-  --+.|-|...
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~--err~llIaRL  278 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG--ERRFLLIARL  278 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC--cceEEEEeec
Confidence            77777777766652  234456777888899998887543  46778899999999988776666541  1233445555


Q ss_pred             cccccccc
Q 012450          226 TTLESLSG  233 (463)
Q Consensus       226 ~~L~~l~~  233 (463)
                      ++++.+.+
T Consensus       279 ~~v~vLNG  286 (418)
T KOG2982|consen  279 TKVQVLNG  286 (418)
T ss_pred             cceEEecC
Confidence            55555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1.1e-05  Score=54.62  Aligned_cols=39  Identities=38%  Similarity=0.505  Sum_probs=23.4

Q ss_pred             CccEEEeeCCCCCCcccccCCcccccccccccccccccc
Q 012450          149 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP  187 (463)
Q Consensus       149 ~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp  187 (463)
                      +|++|++++|+++++|..++++++|+.|++++|+++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            466666666666666655666666666666666665544

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=8.1e-06  Score=88.05  Aligned_cols=105  Identities=23%  Similarity=0.310  Sum_probs=51.6

Q ss_pred             CCcceeecccccCcCCCCCccccc-CCcCccEEeeecCCCCCC--CCC-CCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLL   80 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~-~l~~L~~L~L~~c~~l~~--lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~   80 (463)
                      .+|+.|+++|...+..- |+..++ .+|.|+.|.+.+ ..+..  +.. ..++++|..||+++++++.+ .++++|++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~-W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNG-WPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhcc-HHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence            35666666664433322 122222 356666666665 22211  111 34566666666666666655 4466666666


Q ss_pred             EEeeecCCCCC-ccchhcCCCCCCcEEEEECCC
Q 012450           81 ELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSA  112 (463)
Q Consensus        81 ~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~  112 (463)
                      .|.+.+-..-. ..-..+.+|++|+.||+|...
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            66665422111 111234556666666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=4.1e-06  Score=78.84  Aligned_cols=178  Identities=17%  Similarity=0.219  Sum_probs=96.5

Q ss_pred             CCCcceeecccccCcCCCC-CcccccCCcCccEEeeecCCCCCCCCCC-CCCCCccEEEeeccCCC--ccCccccCCCCc
Q 012450            4 HGKLNQIIMAACNIFTKTP-NPSLIQHLNKLVILNLSGCSKLKSLPEI-SSAGNIEKILLDGTAIE--ELPSSIGCLSRL   79 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~-~~~~~~~l~~L~~L~L~~c~~l~~lp~l-~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L   79 (463)
                      ++.+++|||.+ +.+.+.. ....+.++|.|++|+|+.|..-..+..+ ....+|+.|.|.|+.+.  ...+.+..++.+
T Consensus        70 ~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45666677776 3333320 0233456777777777764332222222 24557777777777554  455556667777


Q ss_pred             cEEeeecCCCCCcc---chhcCCC-CCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCc--ccCCCCCCc
Q 012450           80 LELNLGDCKNLKTL---PSSLCKL-KSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLK--LPFDGLYSL  150 (463)
Q Consensus        80 ~~L~l~~c~~l~~l---p~~l~~l-~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L  150 (463)
                      +.|.++.|+ ++.+   ...+... +.+++|+..+|...   .+-.....++++..+-+..|+ +++..  .....++.+
T Consensus       149 telHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  149 TELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcc
Confidence            777666642 1111   0111111 23444444444322   000111234566666666665 22221  234556777


Q ss_pred             cEEEeeCCCCCCc--ccccCCccccccccccccccc
Q 012450          151 TYLYLTDCAITEL--PESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       151 ~~L~L~~~~l~~~--p~~l~~l~~L~~L~Ls~n~l~  184 (463)
                      -.|+|+.+++.+.  -..+..++.|..|.++++.+.
T Consensus       227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            7899999988773  345778999999999998763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.72  E-value=9.3e-06  Score=87.61  Aligned_cols=129  Identities=19%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             CCccEEEeecc-CCC-ccCccc-cCCCCccEEeeecCCCC-CccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEE
Q 012450           54 GNIEKILLDGT-AIE-ELPSSI-GCLSRLLELNLGDCKNL-KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL  129 (463)
Q Consensus        54 ~~L~~L~L~~~-~i~-~lp~~i-~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L  129 (463)
                      .+|++|+++|. .+. ..|..+ .-||+|+.|.+.+-... ..+-....++++|..||+++++++.+ ..++.|++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            34555555553 111 222222 22455566655542111 11222334555666666666665555 455555666555


Q ss_pred             ecCCCCCCCc-CcccCCCCCCccEEEeeCCCCCCcc-------cccCCcccccccccccccc
Q 012450          130 DLGDCKSLKS-LKLPFDGLYSLTYLYLTDCAITELP-------ESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       130 ~l~~c~~l~~-l~~~l~~l~~L~~L~L~~~~l~~~p-------~~l~~l~~L~~L~Ls~n~l  183 (463)
                      .+.+-..... --..+.++++|+.||+|.......+       +.-..+|+|+.||.|++.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            5554221110 0001345556666666555433321       1112355666666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=2.3e-05  Score=53.03  Aligned_cols=42  Identities=29%  Similarity=0.448  Sum_probs=34.6

Q ss_pred             ccccccccccccccccchhhhCCCCccEeccccccccccCCCC
Q 012450          171 SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL  213 (463)
Q Consensus       171 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l  213 (463)
                      ++|++|++++|+++.+|..+.+|++|+.|++++| .+++++.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l   42 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL   42 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence            4799999999999999988999999999999999 45555543

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.66  E-value=4.2e-06  Score=87.07  Aligned_cols=108  Identities=30%  Similarity=0.405  Sum_probs=48.4

Q ss_pred             CcCccEEeeecCCCCCCCC--C-CCCCCCccEEEeecc--CCCc----cCccccCCCCccEEeeecCCCCCccc-hhc-C
Q 012450           30 LNKLVILNLSGCSKLKSLP--E-ISSAGNIEKILLDGT--AIEE----LPSSIGCLSRLLELNLGDCKNLKTLP-SSL-C   98 (463)
Q Consensus        30 l~~L~~L~L~~c~~l~~lp--~-l~~l~~L~~L~L~~~--~i~~----lp~~i~~l~~L~~L~l~~c~~l~~lp-~~l-~   98 (463)
                      ++.|+.|.+.+|..+....  . ...+++|+.|+++++  .+..    .......+++|+.|++++|..+.... ..+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4555555555554444421  1 444555555555541  1111    11122334556666666555333221 111 1


Q ss_pred             CCCCCcEEEEECCC-Cc--cCCccCCCCCCccEEecCCCCCC
Q 012450           99 KLKSLEEICLTGSA-IE--ELPSPIECLSALCVLDLGDCKSL  137 (463)
Q Consensus        99 ~l~~L~~L~l~~~~-i~--~lp~~i~~l~~L~~L~l~~c~~l  137 (463)
                      .+++|+.|.+.++. ++  .+-.....+++|++|++++|..+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            25566666654444 22  22223344555666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.42  E-value=9.8e-06  Score=68.02  Aligned_cols=56  Identities=30%  Similarity=0.365  Sum_probs=29.1

Q ss_pred             CccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccc
Q 012450          149 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       149 ~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c  204 (463)
                      .++.|++++|.+.++|..+..++.|+.|+++.|.+...|.-+..+.+|-.|+..++
T Consensus        78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence            44555555555555555555555555555555555555544444445555544443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.41  E-value=2.1e-05  Score=81.91  Aligned_cols=171  Identities=23%  Similarity=0.253  Sum_probs=108.7

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeec-CCCCCCCCC-----CCCCCCccEEEeeccC-CCcc--Cccc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSG-CSKLKSLPE-----ISSAGNIEKILLDGTA-IEEL--PSSI   73 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~-c~~l~~lp~-----l~~l~~L~~L~L~~~~-i~~l--p~~i   73 (463)
                      .+++|+.|.+.+|..+++.........+++|+.|++++ |......+.     ...+.+|+.|+++.+. ++..  ....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            47899999999999988842146677899999999998 444444441     4557899999999976 6522  2222


Q ss_pred             cCCCCccEEeeecCCCCCc--cchhcCCCCCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCcccCCCCC
Q 012450           74 GCLSRLLELNLGDCKNLKT--LPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY  148 (463)
Q Consensus        74 ~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~  148 (463)
                      ..+++|+.|.+.+|..++.  +-.....+++|++|+++++...   .+.....++++|+.|.+..+..          +.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence            3488999999998886442  3334567889999999987653   1222233355555544333221          33


Q ss_pred             CccEEEeeCCCC----CCcccccCCcccccccccccccc
Q 012450          149 SLTYLYLTDCAI----TELPESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       149 ~L~~L~L~~~~l----~~~p~~l~~l~~L~~L~Ls~n~l  183 (463)
                      .++.+.+.++..    ......+..+++|+.+.+..+..
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence            444444444322    11223455677777777777663

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.39  E-value=0.00035  Score=62.58  Aligned_cols=102  Identities=24%  Similarity=0.224  Sum_probs=43.8

Q ss_pred             ccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc--cCCCCCCccEEecCC
Q 012450           56 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDLGD  133 (463)
Q Consensus        56 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~  133 (463)
                      ...++|++|.+..++. +..++.|.+|.+.+|.....-|.--..+++|..|.+.+|.|.++-+  .+..++.|++|.+-+
T Consensus        44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            3344444444443322 3344444555444432222222212234445555555555443321  234445555555555


Q ss_pred             CCCCCcC---cccCCCCCCccEEEeeCC
Q 012450          134 CKSLKSL---KLPFDGLYSLTYLYLTDC  158 (463)
Q Consensus       134 c~~l~~l---~~~l~~l~~L~~L~L~~~  158 (463)
                      |+.-..-   --.+..+++|+.||.++-
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhh
Confidence            4421110   002455677777776554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.34  E-value=1.1e-05  Score=67.66  Aligned_cols=85  Identities=21%  Similarity=0.323  Sum_probs=45.5

Q ss_pred             CCCCCCccEEEeeccCCCccCcccc-CCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccE
Q 012450           50 ISSAGNIEKILLDGTAIEELPSSIG-CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV  128 (463)
Q Consensus        50 l~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~  128 (463)
                      +.....|+..+|++|.++.+|..+. ..+.++.|++.+| .+..+|..+..++.|+.|+++.|.+...|.-+..+.+|..
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM  127 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence            3344455555555555555555432 2235555555553 3455555555556666666666655555555555555555


Q ss_pred             EecCCCC
Q 012450          129 LDLGDCK  135 (463)
Q Consensus       129 L~l~~c~  135 (463)
                      |+..++.
T Consensus       128 Lds~~na  134 (177)
T KOG4579|consen  128 LDSPENA  134 (177)
T ss_pred             hcCCCCc
Confidence            5555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.07  E-value=0.00084  Score=60.24  Aligned_cols=102  Identities=25%  Similarity=0.301  Sum_probs=56.6

Q ss_pred             CCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCC-CCCccEEecCCCCC--CCcCcccCCCCCCccE
Q 012450           76 LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIEC-LSALCVLDLGDCKS--LKSLKLPFDGLYSLTY  152 (463)
Q Consensus        76 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~-l~~L~~L~l~~c~~--l~~l~~~l~~l~~L~~  152 (463)
                      +.....+++++|. +..++ .+..++.|.+|.+++|.|+.+.+.+.. +++|..|.+.+|+.  +.++.. +..++.|++
T Consensus        41 ~d~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEY  117 (233)
T ss_pred             ccccceecccccc-hhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccce
Confidence            3456677777754 33333 356677788888888888877555433 34566666666542  222222 445556666


Q ss_pred             EEeeCCCCCCcc----cccCCccccccccccc
Q 012450          153 LYLTDCAITELP----ESLGLLSSLEELYLER  180 (463)
Q Consensus       153 L~L~~~~l~~~p----~~l~~l~~L~~L~Ls~  180 (463)
                      |.+-+|+++.-.    -.+..+|+|+.||..+
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            666665554421    1234445555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.92  E-value=0.00056  Score=64.00  Aligned_cols=58  Identities=12%  Similarity=0.078  Sum_probs=27.6

Q ss_pred             CCccEEEeeCCCCCCcccc-----cCCccccccccccccccc--cc----chhhhCCCCccEecccccc
Q 012450          148 YSLTYLYLTDCAITELPES-----LGLLSSLEELYLERNNFE--RI----PESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       148 ~~L~~L~L~~~~l~~~p~~-----l~~l~~L~~L~Ls~n~l~--~l----p~~l~~l~~L~~L~L~~c~  205 (463)
                      |.|+...+..|++...+..     +..-..|+.+.+..|.+.  .+    -..+..+.+|+.|||.+|.
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence            4456666655555443211     112235555555555542  11    1233445666666666653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=4.9e-05  Score=71.12  Aligned_cols=82  Identities=21%  Similarity=0.288  Sum_probs=45.1

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc--ccCCCCccEE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS--IGCLSRLLEL   82 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L   82 (463)
                      .+.+.|+.-|| .+.++   +....|+.|++|.|+- +.++.+..+..+++|++|+|..|.|..+.+-  +.++++|+.|
T Consensus        19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCC-CccHH---HHHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34455555554 34444   4455566666666665 3555555566666666666666655544432  4555666666


Q ss_pred             eeecCCCCC
Q 012450           83 NLGDCKNLK   91 (463)
Q Consensus        83 ~l~~c~~l~   91 (463)
                      .|..|.-..
T Consensus        94 WL~ENPCc~  102 (388)
T KOG2123|consen   94 WLDENPCCG  102 (388)
T ss_pred             hhccCCccc
Confidence            665544433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.00018  Score=67.39  Aligned_cols=83  Identities=24%  Similarity=0.316  Sum_probs=57.2

Q ss_pred             CCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccc--hhhhCCCCccEecc
Q 012450          124 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLV  201 (463)
Q Consensus       124 ~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L  201 (463)
                      .+.+.|++.||. +.++.. ...++.|+.|.|+-|.++.+ ..+..|++|++|+|..|.|.++-  .-+.++++|+.|+|
T Consensus        19 ~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            344455555554 444432 45677888888888888876 34678888888888888877654  35677888888888


Q ss_pred             cccccccc
Q 012450          202 SYCERLQS  209 (463)
Q Consensus       202 ~~c~~l~~  209 (463)
                      ..|+-...
T Consensus        96 ~ENPCc~~  103 (388)
T KOG2123|consen   96 DENPCCGE  103 (388)
T ss_pred             ccCCcccc
Confidence            88764443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.78  E-value=0.00034  Score=65.08  Aligned_cols=102  Identities=24%  Similarity=0.245  Sum_probs=59.9

Q ss_pred             CCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC--CCCC-cccccCCcccccccccccccccc---cchhhhCCCCc
Q 012450          123 LSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC--AITE-LPESLGLLSSLEELYLERNNFER---IPESIIRLSKL  196 (463)
Q Consensus       123 l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~--~l~~-~p~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L  196 (463)
                      +..|..|++.++. ++.+.. +..+++|++|.++.|  .+.. ++..+..+|+|++|++++|+++.   ++ .+..+.+|
T Consensus        42 ~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENL  118 (260)
T ss_pred             ccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcch
Confidence            3444444444443 222221 445667778888777  4443 54455566888888888887653   33 45667788


Q ss_pred             cEeccccccccc------cCCCCCCCccEeeccCccc
Q 012450          197 SSLLVSYCERLQ------SLPKLPCNLYWLDAQHCTT  227 (463)
Q Consensus       197 ~~L~L~~c~~l~------~l~~l~~~L~~L~i~~c~~  227 (463)
                      ..|++.+|.-.+      .+-.+.++|++|+-..+..
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence            888888885433      1112446666666655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.67  E-value=0.00051  Score=64.28  Aligned_cols=157  Identities=20%  Similarity=0.196  Sum_probs=96.3

Q ss_pred             ccCCcCccEEeeecCCCCCCCC----C-CCCCCCccEEEeeccC---CC-ccCc-------cccCCCCccEEeeecCCCC
Q 012450           27 IQHLNKLVILNLSGCSKLKSLP----E-ISSAGNIEKILLDGTA---IE-ELPS-------SIGCLSRLLELNLGDCKNL   90 (463)
Q Consensus        27 ~~~l~~L~~L~L~~c~~l~~lp----~-l~~l~~L~~L~L~~~~---i~-~lp~-------~i~~l~~L~~L~l~~c~~l   90 (463)
                      +..+..+..++|+||..-+.-.    . +.+-.+|+..+++.-.   .+ ++++       .+-.|++|+..+|++|...
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3457788888888865544322    1 5566777777777631   11 3332       3456788888888887665


Q ss_pred             Cccc----hhcCCCCCCcEEEEECCCCccCCc--------------cCCCCCCccEEecCCCCCCCcCccc-----CCCC
Q 012450           91 KTLP----SSLCKLKSLEEICLTGSAIEELPS--------------PIECLSALCVLDLGDCKSLKSLKLP-----FDGL  147 (463)
Q Consensus        91 ~~lp----~~l~~l~~L~~L~l~~~~i~~lp~--------------~i~~l~~L~~L~l~~c~~l~~l~~~-----l~~l  147 (463)
                      ...|    +.|+.-+.|++|.+++|++..+..              -...-+.|+......|. +...+..     +..-
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh  184 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESH  184 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhh
Confidence            5544    345677788888888887753321              12334567777666554 3332221     1122


Q ss_pred             CCccEEEeeCCCCCC------cccccCCccccccccccccccc
Q 012450          148 YSLTYLYLTDCAITE------LPESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       148 ~~L~~L~L~~~~l~~------~p~~l~~l~~L~~L~Ls~n~l~  184 (463)
                      ..|+.+.+..|.|..      +-..+..+.+|+.|+|.+|-|+
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            467888888887753      1223456778888888888775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.61  E-value=0.001  Score=62.04  Aligned_cols=107  Identities=22%  Similarity=0.245  Sum_probs=72.0

Q ss_pred             ccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeecc--CCC-ccCccccCCCCccEEeeecCCCC--CccchhcCCCC
Q 012450           27 IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT--AIE-ELPSSIGCLSRLLELNLGDCKNL--KTLPSSLCKLK  101 (463)
Q Consensus        27 ~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~--~i~-~lp~~i~~l~~L~~L~l~~c~~l--~~lp~~l~~l~  101 (463)
                      ...+..|+.|++.++ .++.+..+..+++|++|.++.|  ++. .++.....+++|++|++++|+.-  ..++ .+..++
T Consensus        39 ~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE  116 (260)
T ss_pred             cccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence            345667777777763 5555666777889999999988  554 55555667799999999986532  1222 245677


Q ss_pred             CCcEEEEECCCCccCCc----cCCCCCCccEEecCCCC
Q 012450          102 SLEEICLTGSAIEELPS----PIECLSALCVLDLGDCK  135 (463)
Q Consensus       102 ~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~c~  135 (463)
                      +|..|++.+|..+.+-.    .+.-+++|++|+-....
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            78888888887765432    23456778888766544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.15  E-value=0.06  Score=44.99  Aligned_cols=56  Identities=11%  Similarity=0.230  Sum_probs=20.0

Q ss_pred             ccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccEEeee
Q 012450           27 IQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLG   85 (463)
Q Consensus        27 ~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~   85 (463)
                      +.++.+|+.+.+..  .++.++.  +..+++|+.+.+.++ +..++.. +..+++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            44445555555542  2334433  444445555555442 4433332 3344445555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.14  E-value=0.064  Score=44.85  Aligned_cols=100  Identities=17%  Similarity=0.310  Sum_probs=59.0

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCC
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSR   78 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~   78 (463)
                      .++++|+.+.+..  .++.+. ...+.++++|+.+.+.+  .+..++.  +..+++|+.+.+.+ .+..++.. +..+++
T Consensus         9 ~~~~~l~~i~~~~--~~~~I~-~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    9 YNCSNLESITFPN--TIKKIG-ENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TT-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             hCCCCCCEEEECC--CeeEeC-hhhcccccccccccccc--cccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4678899999874  455554 45688898999999987  3777777  78888999999976 66655544 566899


Q ss_pred             ccEEeeecCCCCCccchh-cCCCCCCcEEEEEC
Q 012450           79 LLELNLGDCKNLKTLPSS-LCKLKSLEEICLTG  110 (463)
Q Consensus        79 L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~  110 (463)
                      |+.+.+..  .+..++.. +.+. +|+.+.+..
T Consensus        83 l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPS--NITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence            99999965  25555543 4555 777777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.71  E-value=0.011  Score=33.35  Aligned_cols=18  Identities=50%  Similarity=0.623  Sum_probs=9.1

Q ss_pred             ccccccccccccccchhh
Q 012450          173 LEELYLERNNFERIPESI  190 (463)
Q Consensus       173 L~~L~Ls~n~l~~lp~~l  190 (463)
                      |++|+|++|+++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.42  E-value=0.015  Score=32.81  Aligned_cols=18  Identities=33%  Similarity=0.613  Sum_probs=9.4

Q ss_pred             ccEEEeeccCCCccCccc
Q 012450           56 IEKILLDGTAIEELPSSI   73 (463)
Q Consensus        56 L~~L~L~~~~i~~lp~~i   73 (463)
                      |++|++++|.++.+|+++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.23  E-value=0.033  Score=29.23  Aligned_cols=10  Identities=30%  Similarity=0.282  Sum_probs=3.1

Q ss_pred             ccEEEeeCCC
Q 012450          150 LTYLYLTDCA  159 (463)
Q Consensus       150 L~~L~L~~~~  159 (463)
                      |+.|+|++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.97  E-value=0.011  Score=53.31  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=47.9

Q ss_pred             cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--C-CCCCCccEEEeecc-CCCcc-CccccCCCCccE
Q 012450            7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--I-SSAGNIEKILLDGT-AIEEL-PSSIGCLSRLLE   81 (463)
Q Consensus         7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l-~~l~~L~~L~L~~~-~i~~l-p~~i~~l~~L~~   81 (463)
                      ++.+|-+++....+-  -+.+..++.++.|.+.+|..+.+.--  + +-.++|+.|+|++| .|++- -..+..+++|+.
T Consensus       103 IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHH--HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            345555554433333  34556677777777777766654321  2 24677888888876 66632 233667778888


Q ss_pred             EeeecCC
Q 012450           82 LNLGDCK   88 (463)
Q Consensus        82 L~l~~c~   88 (463)
                      |.+.+-+
T Consensus       181 L~l~~l~  187 (221)
T KOG3864|consen  181 LHLYDLP  187 (221)
T ss_pred             HHhcCch
Confidence            8777643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.18  E-value=0.094  Score=27.50  Aligned_cols=13  Identities=8%  Similarity=0.253  Sum_probs=4.2

Q ss_pred             ccEEEeeccCCCc
Q 012450           56 IEKILLDGTAIEE   68 (463)
Q Consensus        56 L~~L~L~~~~i~~   68 (463)
                      |+.|++++|.+++
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444433

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.70  E-value=0.0035  Score=65.04  Aligned_cols=18  Identities=11%  Similarity=0.329  Sum_probs=9.5

Q ss_pred             CCCCCCccEEEeeccCCC
Q 012450           50 ISSAGNIEKILLDGTAIE   67 (463)
Q Consensus        50 l~~l~~L~~L~L~~~~i~   67 (463)
                      +...+.|+.|++++|.+.
T Consensus       111 l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             hcccccHhHhhcccCCCc
Confidence            334555555555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.87  E-value=0.062  Score=48.49  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=16.3

Q ss_pred             cccccccccccc-cccc-cchhhhCCCCccEeccccc
Q 012450          170 LSSLEELYLERN-NFER-IPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       170 l~~L~~L~Ls~n-~l~~-lp~~l~~l~~L~~L~L~~c  204 (463)
                      .++|+.|+|++| +|++ --..+.++++|+.|.|.+-
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence            344555555544 2331 1134555555555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.11  E-value=0.41  Score=27.90  Aligned_cols=19  Identities=32%  Similarity=0.559  Sum_probs=11.8

Q ss_pred             ccccccccccccccccchh
Q 012450          171 SSLEELYLERNNFERIPES  189 (463)
Q Consensus       171 ~~L~~L~Ls~n~l~~lp~~  189 (463)
                      ++|+.|+|++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666644

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.11  E-value=0.41  Score=27.90  Aligned_cols=19  Identities=32%  Similarity=0.559  Sum_probs=11.8

Q ss_pred             ccccccccccccccccchh
Q 012450          171 SSLEELYLERNNFERIPES  189 (463)
Q Consensus       171 ~~L~~L~Ls~n~l~~lp~~  189 (463)
                      ++|+.|+|++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666644

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.95  E-value=0.55  Score=27.33  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=13.8

Q ss_pred             CCCccEEEeeccCCCccCcc
Q 012450           53 AGNIEKILLDGTAIEELPSS   72 (463)
Q Consensus        53 l~~L~~L~L~~~~i~~lp~~   72 (463)
                      +++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.95  E-value=0.55  Score=27.33  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=13.8

Q ss_pred             CCCccEEEeeccCCCccCcc
Q 012450           53 AGNIEKILLDGTAIEELPSS   72 (463)
Q Consensus        53 l~~L~~L~L~~~~i~~lp~~   72 (463)
                      +++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.90  E-value=0.027  Score=51.88  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=41.9

Q ss_pred             CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEE
Q 012450           50 ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL  129 (463)
Q Consensus        50 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L  129 (463)
                      +......+.|+++.+.+..+-..+..++.|..|+++. +.+..+|..+..+..+..+++..|..+..|.+.+..+.++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            4444455555555554444444444455555555554 234445555555555555555555555555555555555555


Q ss_pred             ecCCC
Q 012450          130 DLGDC  134 (463)
Q Consensus       130 ~l~~c  134 (463)
                      ++.++
T Consensus       117 e~k~~  121 (326)
T KOG0473|consen  117 EQKKT  121 (326)
T ss_pred             hhccC
Confidence            44443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.78  E-value=0.67  Score=27.06  Aligned_cols=18  Identities=17%  Similarity=0.379  Sum_probs=12.2

Q ss_pred             CCCcceeecccccCcCCC
Q 012450            4 HGKLNQIIMAACNIFTKT   21 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~   21 (463)
                      |++|++|+|++|..+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            467777777777766653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.82  E-value=0.075  Score=49.03  Aligned_cols=83  Identities=23%  Similarity=0.188  Sum_probs=53.5

Q ss_pred             CCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEecc
Q 012450          122 CLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV  201 (463)
Q Consensus       122 ~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  201 (463)
                      .....+.||++.+. +..+...+..++.|..|+++.+.+.-+|.+++....+..+++..|+.+..|.+..+.++++++++
T Consensus        40 ~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            34444555555443 23333334455566677777776666777777777777777777777777777777777777777


Q ss_pred             cccc
Q 012450          202 SYCE  205 (463)
Q Consensus       202 ~~c~  205 (463)
                      .+++
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            7664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	463
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 41  CSKLKSLPEISSA-GNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL--------- 90
            + L  LP+       +E + L    +  LP+SI  L+RL EL++  C  L         
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 91  -----------------------KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALC 127
                                  ++LP+S+  L++L+ + +  S +  L   I  L  L 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
Query: 128 VLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 159
            LDL  C +L++    F G   L  L L DC+
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	463
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  155 bits (393), Expect = 2e-43
 Identities = 58/206 (28%), Positives = 86/206 (41%), Gaps = 14/206 (6%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
           P     L+ L  + +     L  LP  +     +E + L    +  LP+SI  L+RL EL
Sbjct: 97  PDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155

Query: 83  NLGDCKNLKTLPSSLCK---------LKSLEEICLTGSAIEELPSPIECLSALCVLDLGD 133
           ++  C  L  LP  L           L +L+ + L  + I  LP+ I  L  L  L + +
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN 215

Query: 134 CKSLKSLKLPFDGLYSLTYLYLTDC-AITELPESLGLLSSLEELYL-ERNNFERIPESII 191
              L +L      L  L  L L  C A+   P   G  + L+ L L + +N   +P  I 
Sbjct: 216 SP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 192 RLSKLSSLLVSYCERLQSLPKLPCNL 217
           RL++L  L +  C  L  LP L   L
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQL 300

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  148 bits (376), Expect = 4e-41
 Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 19/225 (8%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLP---EISSAGNIEKILLDGTAIEELPSSIGCLSRL 79
           +     + N   I   +    LK+     E ++      + L    + + P     LS L
Sbjct: 48  SAWRQANSNNPQIETRT-GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 80  LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKS 139
             + +     L  LP ++ +   LE + L  + +  LP+ I  L+ L  L +  C  L  
Sbjct: 107 QHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE 165

Query: 140 L---------KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI 190
           L              GL +L  L L    I  LP S+  L +L+ L +  +    +  +I
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI 225

Query: 191 IRLSKLSSLLVSYCERLQSLP----KLPCNLYWLDAQHCTTLESL 231
             L KL  L +  C  L++ P         L  L  + C+ L +L
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  131 bits (333), Expect = 5e-35
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 16/196 (8%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
           P+ I  LN+L  L++  C +L  LPE     + +                  L  L  L 
Sbjct: 143 PASIASLNRLRELSIRACPELTELPE--PLASTD-----------ASGEHQGLVNLQSLR 189

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
           L     +++LP+S+  L++L+ + +  S +  L   I  L  L  LDL  C +L++    
Sbjct: 190 LEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 144 FDGLYSLTYLYLTDC-AITELPESLGLLSSLEELYLERN-NFERIPESIIRLSKLSSLLV 201
           F G   L  L L DC  +  LP  +  L+ LE+L L    N  R+P  I +L     +LV
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 202 SYCERLQSLPKLPCNL 217
               + Q     P   
Sbjct: 309 PPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (299), Expect = 3e-30
 Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 30/209 (14%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
             H +    L   G + L+   +                       +    R    +   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHD----------------------VLSQWQRHYNADR-- 43

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLS--ALCVLDLGDCKSLKSLKLPF 144
             N            + +    TG A++     +E  +      L+L     L       
Sbjct: 44  --NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQA 100

Query: 145 DGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 204
             L  L ++ +    + ELP+++   + LE L L RN    +P SI  L++L  L +  C
Sbjct: 101 FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160

Query: 205 ERLQSLPKLPCNLYWLDA-QHCTTLESLS 232
             L  LP+   +       Q    L+SL 
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLR 189

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (301), Expect = 5e-29
 Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 25/221 (11%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
              IQ L KL I+  +            +    +         E    S   L  L ++ 
Sbjct: 441 SKAIQRLTKLQIIYFANS-PFTYDNI--AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTG----------SAIEELPSPIECLSALCVLDLGD 133
           L +C N+  LP  L  L  L+ + +            +    L    +    + +  +G 
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 134 CKSLKSLKLP--FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII 191
              L+          +  L  L      +  L    G    L +L L+ N  E IPE   
Sbjct: 558 NN-LEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 192 R-LSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL 231
               ++  L  S+  +L+ +P         +A+    + S+
Sbjct: 616 AFTDQVEGLGFSHN-KLKYIPN------IFNAKSVYVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (264), Expect = 2e-24
 Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 36/289 (12%)

Query: 8   NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGT 64
           N+ I AA      T          K+ I  +     L+  P    +     +  +     
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN 583

Query: 65  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCK-LKSLEEICLTGSAIEELPSPIEC- 122
            +  L  + G   +L +L L     ++ +P   C     +E +  + + ++ +P+     
Sbjct: 584 KVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641

Query: 123 -LSALCVLDLGDCKSLKSL------KLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLE 174
            +  +  +D    K + S        +      + + + L+   I + P E     S + 
Sbjct: 642 SVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700

Query: 175 ELYLERNNFERIPE--------SIIRLSKLSSLLVSYCERLQSLP------KLPCNLYWL 220
            + L  N    IPE        +      L+++ + +  +L SL        LP  L  +
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLP-YLSNM 758

Query: 221 DAQHCTTLESL-SGLFSSYKCVFFYLNENFKLDR-KLRGIVEDALQNIQ 267
           D  +     S  +   +S +   F +      +  ++       +    
Sbjct: 759 DVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  102 bits (255), Expect = 3e-23
 Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 30/228 (13%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGN---IEKILLDGTAIEELPSSIGC----- 75
                  +++  L  S   KLK +P I +A +   +  +      I     +I C     
Sbjct: 612 EDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 76  -LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--------PIECLSAL 126
                  + L   +  K           +  I L+ + +  +P           +    L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 127 CVLDLGDCKSLKSL--KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF- 183
             +DL   K L SL        L  L+ + ++    +  P      S L+   +      
Sbjct: 731 TTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDA 789

Query: 184 ------ERIPESIIRLSKLSSLLVSYCERLQSLP-KLPCNLYWLDAQH 224
                  + P  I     L  L +     ++ +  KL   LY LD   
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLTPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.9 bits (223), Expect = 3e-19
 Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 29/214 (13%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 75
           N   K P   L    + +  + LS    + S+PE               +++    +   
Sbjct: 683 NEIQKFP-TELFATGSPISTIILSNN-LMTSIPE--------------NSLKPKDGNYKN 726

Query: 76  LSRLLELNLGDCKNLKTLPSSL--CKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD 133
              L  ++L   K L +L        L  L  + ++ +     P+     S L    +  
Sbjct: 727 TYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785

Query: 134 CKSLKSLKL------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 187
            +  +  ++            SL  L +    I ++ E L     L  L +  N    I 
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISID 843

Query: 188 ESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLD 221
            + +     + + V   ++ Q +    C+   ++
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDI--RGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 33/251 (13%), Positives = 75/251 (29%), Gaps = 38/251 (15%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
           + +  ++  L+L+G                +  +         P +IG L+ L  L+ G 
Sbjct: 319 LDNNGRVTGLSLAGF-------------GAKGRV---------PDAIGQLTELKVLSFGT 356

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP-FD 145
             +           +   ++         +      L     L+L D       + P   
Sbjct: 357 H-SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415

Query: 146 GLYSLTYLYLTDC-------AITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSS 198
            +   + + L D         IT + +++  L+ L+ +Y   + F     ++      S 
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

Query: 199 LLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL-SGLFSSYKCVFFYLNENFKLDRKLRG 257
               Y     S   L  +L  ++  +C  +  L   L+   +     +  N     +   
Sbjct: 476 YAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN-----RGIS 529

Query: 258 IVEDALQNIQL 268
             +      +L
Sbjct: 530 AAQLKADWTRL 540

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (285), Expect = 4e-27
 Identities = 31/221 (14%), Positives = 68/221 (30%), Gaps = 23/221 (10%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
              +  L KL    +        + E        +        +        L  L ++ 
Sbjct: 199 SKAVMRLTKLRQFYMGNS---PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP---------IECLSALCVLDLGDC 134
           + +C NL  LP+ L  L  ++ I +  +                       + ++ +G  
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 135 KSLKSLKLP--FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII- 191
             LK+  +      +  L  L      +     + G    L  L L  N    IP +   
Sbjct: 316 N-LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG 374

Query: 192 RLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 232
              ++ +L  ++  +L+ +P         DA+  + + ++ 
Sbjct: 375 FTEQVENLSFAHN-KLKYIPN------IFDAKSVSVMSAID 408

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 2e-23
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 38/265 (14%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL-----------LDGT 64
           N  T+ P  +      ++  L+ +   KLK +P I  A ++  +            +DG 
Sbjct: 363 NQITEIP-ANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 65  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLC-KLKSLEEICLTGSAIEELPSP---- 119
             + L  +      +  +NL +   +   P  L      L  I L G+ + E+P      
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 120 ----IECLSALCVLDLGDCKSLKSL--KLPFDGLYSLTYLYLTDCAITELPESLGLLSSL 173
                +    L  +DL   K L  L        L  L  + L+  + ++ P      S+L
Sbjct: 480 ENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538

Query: 174 EELYLE------RNNFER-IPESIIRLSKLSSLLVSYCERLQSLPKLPC-NLYWLDAQHC 225
           +   +        N   R  PE I     L+ L +     ++ + +    N+  LD +  
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKITPNISVLDIKDN 597

Query: 226 --TTLESLSGLFSSYKCVFFYLNEN 248
              ++  LS +    +   + L  +
Sbjct: 598 PNISI-DLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 32/199 (16%)

Query: 49  EISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGD----CKNLKTLPSSLCKLKSL 103
            ++S G +  + L+G      +P +IG L+ L  L LG            P  +    S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 104 EEICL-----TGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 158
           E+          + ++  P   E  S L    +      KS+K         T +     
Sbjct: 136 EQKQKMRMHYQKTFVDYDPR--EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 159 AITELPESLGLLSSLEELYLERNNF--------------------ERIPESIIRLSKLSS 198
            IT + +++  L+ L + Y+  + F                    +        L  L+ 
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 199 LLVSYCERLQSLPKLPCNL 217
           + V  C  L  LP     L
Sbjct: 254 VEVYNCPNLTKLPTFLKAL 272

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 25/191 (13%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP---------EISSAGNIEKILLDGTAI 66
           N  +K P   L    + L  +NL G   L  +P            +   +  I L    +
Sbjct: 443 NQISKFP-KELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

Query: 67  EELPSSI--GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI-------EELP 117
            +L        L  L+ ++L    +    P+      +L+   +             E P
Sbjct: 501 TKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 118 SPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEEL 176
             I    +L  L +G    ++ +        +++ L + D     +    +         
Sbjct: 560 EGITLCPSLTQLQIGSND-IRKV--NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 177 YLERNNFERIP 187
            L  +  + I 
Sbjct: 617 MLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 81
           N S ++        +  G   L+  P  I+   ++ ++ +    I ++   I     +  
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISV 591

Query: 82  LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS 118
           L++ D  N+    S +C         L     +++  
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  102 bits (257), Expect = 7e-24
 Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 27/226 (11%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
            L      L  +      +L+ LPE+ +   +  I  D  ++++LP     L     +  
Sbjct: 167 KLPDLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE---SIVA 222

Query: 85  GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLD---------LGDCK 135
           G+   L+ LP  L  L  L  I    + ++ LP     L AL V D              
Sbjct: 223 GNNI-LEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLT 280

Query: 136 SLKSLKLPFDGL----YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII 191
            L   +  F GL     +L YL  +   I  L +   L  SLEEL +  N    +P    
Sbjct: 281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPALP- 336

Query: 192 RLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSS 237
              +L  L+ S+   L  +P+LP NL  L  ++   L     +  S
Sbjct: 337 --PRLERLIASFN-HLAEVPELPQNLKQLHVEYN-PLREFPDIPES 378

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (254), Expect = 2e-23
 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 19/213 (8%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
           +L      L  L +S   +L+ LPE+ ++  ++ I +D  ++++LP        L  +  
Sbjct: 125 ALSDLPPLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAA 180

Query: 85  GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF 144
           G+ + L+ LP  L  L  L  I    +++++LP   +   +L  +  G+   L+ L    
Sbjct: 181 GNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLP---DLPLSLESIVAGNNI-LEELP-EL 233

Query: 145 DGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 204
             L  LT +Y  +  +  LP+      SLE L +  N    +PE       L+ L VS  
Sbjct: 234 QNLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELP---QSLTFLDVSEN 287

Query: 205 ERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSS 237
                L +LP NLY+L+A     + SL  L  S
Sbjct: 288 -IFSGLSELPPNLYYLNASSN-EIRSLCDLPPS 318

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (250), Expect = 6e-23
 Identities = 46/214 (21%), Positives = 74/214 (34%), Gaps = 31/214 (14%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
            L      L  +       L+ LPE+ +   +  I  D   ++ LP     L  L   + 
Sbjct: 209 KLPDLPLSLESIVAGNN-ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 267

Query: 85  GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSA--------------LCVLD 130
                L  LP     L  L+      S + ELP  +  L+A              L  L+
Sbjct: 268 ----YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 323

Query: 131 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI 190
           + + K L  L         L  L  +   + E+PE      +L++L++E N     P+  
Sbjct: 324 VSNNK-LIEL---PALPPRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIP 376

Query: 191 IRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQH 224
             +  L          L  +P+LP NL  L  + 
Sbjct: 377 ESVEDLRMNS-----HLAEVPELPQNLKQLHVET 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (250), Expect = 6e-23
 Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 29/225 (12%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
           +Q+ + L I+++     LK LP+     ++E I      +EELP  +  L  L  +   +
Sbjct: 149 LQNSSFLKIIDVDNN-SLKKLPD--LPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADN 204

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 146
              LK LP     L+S+       + +EELP  ++ L  L  +   +   LK+L    D 
Sbjct: 205 NS-LKKLPDLPLSLESIV---AGNNILEELPE-LQNLPFLTTIYADNNL-LKTLP---DL 255

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRL------------- 193
             SL  L + D  +T+LPE    L+ L+      +    +P ++  L             
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 315

Query: 194 -SKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSS 237
              L  L VS   +L  LP LP  L  L A     L  +  L  +
Sbjct: 316 PPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQN 358

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 34/218 (15%)

Query: 48  PEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC 107
           P   S   +++ L   + + E+P     +    E      +  +  P    + + +    
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 108 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL 167
           L      +             L+L +   L SL    +    L  L  +  ++TELPE  
Sbjct: 65  LRDCLDRQAHE----------LELNNLG-LSSLP---ELPPHLESLVASCNSLTELPELP 110

Query: 168 G-----------------LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210
                             L   LE L +  N  E++PE +   S L  + V     L+ L
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNN-SLKKL 168

Query: 211 PKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNEN 248
           P LP +L ++ A +   LE L  L +       Y + N
Sbjct: 169 PDLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 28/191 (14%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
           P L Q L  L +      S L  LP      N+  +      I  L         L ELN
Sbjct: 273 PELPQSLTFLDVSENIF-SGLSELP-----PNLYYLNASSNEIRSLCDL---PPSLEELN 323

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLD---------LGDC 134
           + + K L  LP+   +L+ L     + + + E+P   + L  L V               
Sbjct: 324 VSNNK-LIELPALPPRLERLI---ASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESV 379

Query: 135 KSLK---SLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII 191
           + L+    L    +   +L  L++    + E P+      S+E+L +         E   
Sbjct: 380 EDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE---SVEDLRMNSERVVDPYEFAH 436

Query: 192 RLSKLSSLLVS 202
             +      V 
Sbjct: 437 ETTDKLEDDVF 447

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
           SL      L  LN+S   KL  LP  +    +E+++     + E+P     L    +L++
Sbjct: 311 SLCDLPPSLEELNVSNN-KLIELP--ALPPRLERLIASFNHLAEVPELPQNLK---QLHV 364

Query: 85  GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF 144
                L+  P     ++ L         + E+P   E    L  L +     L+      
Sbjct: 365 EYNP-LREFPDIPESVEDLRMNSH----LAEVP---ELPQNLKQLHVETNP-LREFP--- 412

Query: 145 DGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNN 182
           D   S+  L +    + +  E +      LE+   E ++
Sbjct: 413 DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 7/74 (9%), Positives = 19/74 (25%), Gaps = 5/74 (6%)

Query: 163 LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDA 222
           +       + L+E     +N   +P     +   +    ++ E  ++ P        +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 223 QH-----CTTLESL 231
                        L
Sbjct: 63  SRLRDCLDRQAHEL 76

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.8 bits (247), Expect = 4e-23
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 13/212 (6%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
              L + +   L     +  +       +I K+++ G  +  +   I  L+ L  LNL  
Sbjct: 18  DADLAEGIRAVLQKA-SVTDVVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNG 75

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 146
            + +  +   L  L  L  + +  + I ++   ++ L+ L  L L +   +  +  P   
Sbjct: 76  NQ-ITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDIS-PLAN 130

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC-- 204
           L  +  L L           L  ++ L  L +  +  + +   I  L+ L SL ++Y   
Sbjct: 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189

Query: 205 ERLQSLPKLPCNLYWLDAQHC--TTLESLSGL 234
           E +  L  L  +L++  A     T +  ++ +
Sbjct: 190 EDISPLASLT-SLHYFTAYVNQITDITPVANM 220

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.4 bits (233), Expect = 3e-21
 Identities = 39/202 (19%), Positives = 85/202 (42%), Gaps = 27/202 (13%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
           + S + ++  L  L ++   K+K +  I++  ++  + L+   IE++ S +  L+ L   
Sbjct: 147 DLSPLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYF 204

Query: 83  NLGD-----------CKNLKTL---------PSSLCKLKSLEEICLTGSAIEELPSPIEC 122
                             L +L          S L  L  L  + +  + I ++   ++ 
Sbjct: 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKD 263

Query: 123 LSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERN 181
           L+ L +L++G  + +  +    + L  L  L+L +  +     E +G L++L  L+L +N
Sbjct: 264 LTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 182 NFERIPESIIRLSKLSSLLVSY 203
           +   I   +  LSK+ S   + 
Sbjct: 322 HITDIRP-LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
           + ++ +L  L +    K+  L  +++   +  + +    I ++ + +  L++L  LN+G 
Sbjct: 217 VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGS 274

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFD 145
            + +  + S L  L  L  + L  + +       I  L+ L  L L     +  ++ P  
Sbjct: 275 NQ-ISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIR-PLA 330

Query: 146 GLYSLTYLYLTDCAITE 162
            L  +      +  I +
Sbjct: 331 SLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 15/94 (15%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLE 81
           + + ++ L KL +LN+    ++  +  +++   +  + L+   +       IG L+ L  
Sbjct: 257 DINAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 82  LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE 115
           L L    ++  +   L  L  ++        I++
Sbjct: 316 LFLSQN-HITDIR-PLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 16/111 (14%)

Query: 137 LKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 187
             +L           P   L       L   ++T++  +   L S+ +L +       I 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQ 60

Query: 188 ESIIRLSKLSSLLVSYCE--RLQSLPKLPCNLYWLDAQHC--TTLESLSGL 234
             I  L+ L  L ++  +   +  L  L   L  L       T + +L  L
Sbjct: 61  G-IEYLTNLEYLNLNGNQITDISPLSNLV-KLTNLYIGTNKITDISALQNL 109

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 99.3 bits (247), Expect = 2e-22
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 22/191 (11%)

Query: 30  LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN 89
           +N+   L L+    L SLP+ +    I  + +   A+  LP     L     L+  D + 
Sbjct: 58  INQFSELQLNRL-NLSSLPD-NLPPQITVLEITQNALISLPELPASLEY---LDACDNR- 111

Query: 90  LKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYS 149
           L TLP     LK L+   +  + +  LP   E  + L  ++  + + L    LP +   S
Sbjct: 112 LSTLPELPASLKHLD---VDNNQLTMLP---ELPALLEYINADNNQ-LTM--LP-ELPTS 161

Query: 150 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS-YCE--R 206
           L  L + +  +T LPE   L  SLE L +  N  E +P   +R        +   C   R
Sbjct: 162 LEVLSVRNNQLTFLPE---LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218

Query: 207 LQSLPKLPCNL 217
           +  +P+   +L
Sbjct: 219 ITHIPENILSL 229

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.1 bits (218), Expect = 8e-19
 Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 21/208 (10%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
           P L   L  L   +     +L +LPE     +++ + +D   +  LP     L     +N
Sbjct: 96  PELPASLEYLDACDN----RLSTLPE--LPASLKHLDVDNNQLTMLPELPALLE---YIN 146

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
             + + L  LP     L+ L    +  + +  LP   E   +L  LD+     L+SL   
Sbjct: 147 ADNNQ-LTMLPELPTSLEVLS---VRNNQLTFLP---ELPESLEALDVSTNL-LESLPAV 198

Query: 144 FDGLYSLT----YLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 199
               +       +    +  IT +PE++  L     + LE N         +        
Sbjct: 199 PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 200 LVSYCERLQSLPKLPCNLYWLDAQHCTT 227
                            L+   A   T 
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 10/147 (6%)

Query: 92  TLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG-LYSL 150
           ++   +    SL +     +                   L      +++ L  +  +   
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 151 TYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210
           + L L    ++ LP++L     +  L + +N    +PE     + L  L      RL +L
Sbjct: 62  SELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELP---ASLEYLDACDN-RLSTL 115

Query: 211 PKLPCNLYWLDAQHC--TTL-ESLSGL 234
           P+LP +L  LD  +   T L E  + L
Sbjct: 116 PELPASLKHLDVDNNQLTMLPELPALL 142

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.8 bits (147), Expect = 5e-10
 Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE-- 81
           P L   L  L   ++    +L  LPE     ++E + +    +E LP+         E  
Sbjct: 156 PELPTSLEVL---SVRNN-QLTFLPE--LPESLEALDVSTNLLESLPAVPVRNHHSEETE 209

Query: 82  --LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKS 139
                 + + +  +P ++  L     I L  + +                  G       
Sbjct: 210 IFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 140 LKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 199
                +      +  L D      PE     +   ++    + FE    +    + L  L
Sbjct: 269 SDGQQN----TLHRPLADAVTAWFPE-----NKQSDVSQIWHAFEHEEHANTFSAFLDRL 319

Query: 200 LVSY 203
             + 
Sbjct: 320 SDTV 323

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.8 bits (246), Expect = 3e-22
 Identities = 50/199 (25%), Positives = 77/199 (38%), Gaps = 24/199 (12%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
           P+L   L KL   N     +L SLP       ++++ +    +  LP+    L +L   N
Sbjct: 157 PALPSELCKLWAYNN----QLTSLPM--LPSGLQELSVSDNQLASLPTLPSELYKLWAYN 210

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
                 L +LP+    LK L    ++G+ +  LP      S L  L +   + L SL  P
Sbjct: 211 N----RLTSLPALPSGLKELI---VSGNRLTSLP---VLPSELKELMVSGNR-LTSL--P 257

Query: 144 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIR----LSKLSSL 199
                 L  L +    +T LPESL  LSS   + LE N         +R        S  
Sbjct: 258 -MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGP 316

Query: 200 LVSYCERLQSLPKLPCNLY 218
           ++ +     S P+    L+
Sbjct: 317 IIRFDMAGASAPRETRALH 335

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 1e-21
 Identities = 43/208 (20%), Positives = 67/208 (32%), Gaps = 46/208 (22%)

Query: 30  LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN 89
            N   +LN+     L +LP+     +I  +++    +  LP+       L  L +   + 
Sbjct: 39  NNGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNNLTSLPALPP---ELRTLEVSGNQ- 92

Query: 90  LKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYS 149
           L +LP     L  L       + +  LPS                               
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHLPALPS------------------------------G 122

Query: 150 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQS 209
           L  L++    +T LP        L+EL +  N    +P      S+L  L      +L S
Sbjct: 123 LCKLWIFGNQLTSLPVLPP---GLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTS 175

Query: 210 LPKLPCNLYWLDAQHC--TTL-ESLSGL 234
           LP LP  L  L        +L    S L
Sbjct: 176 LPMLPSGLQELSVSDNQLASLPTLPSEL 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.1 bits (187), Expect = 6e-15
 Identities = 33/140 (23%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 98  CKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD 157
           C       + +  S +  LP  +   + +  L + D  +L SL  P      L  L ++ 
Sbjct: 37  CLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDN-NLTSL--P-ALPPELRTLEVSG 90

Query: 158 CAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNL 217
             +T LP     L  L        +   +P        L  L +    +L SLP LP  L
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGN-QLTSLPVLPPGL 143

Query: 218 YWLDAQHCTTLESLSGLFSS 237
             L       L SL  L S 
Sbjct: 144 QELSVSDN-QLASLPALPSE 162

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 10/159 (6%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
           P+L   L +L++       +L SLP       ++++++ G  +  LP        LL L+
Sbjct: 217 PALPSGLKELIVSGN----RLTSLPV--LPSELKELMVSGNRLTSLPMLPS---GLLSLS 267

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
           +   + L  LP SL  L S   + L G+ + E                G           
Sbjct: 268 VYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 144 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 182
                   +L   D  +                  E N 
Sbjct: 327 APRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
           +   +++LN L  +N S   +L  +  + +   +  IL++   I ++   +  L+ L  L
Sbjct: 60  SIDGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117

Query: 83  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 142
            L + + +  +   L  L +L  + L+ + I ++   +  L++L  L  G+  +      
Sbjct: 118 TLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLK--- 171

Query: 143 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 202
           P   L +L  L ++   ++++   L  L++LE L    N    I   +  L+ L  L ++
Sbjct: 172 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLN 229

Query: 203 YC--ERLQSLPKLPCNLYWLDAQHC--TTLESLSGL 234
               + + +L  L  NL  LD  +   + L  LSGL
Sbjct: 230 GNQLKDIGTLASLT-NLTDLDLANNQISNLAPLSGL 264

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 39/234 (16%), Positives = 80/234 (34%), Gaps = 31/234 (13%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
           +   +  L  L  L+L+   ++ +L  +S    + ++ L    I  +   +  L+ L  L
Sbjct: 235 DIGTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNL 292

Query: 83  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL----------- 131
            L + + L+ +   +  LK+L  + L  + I ++ SP+  L+ L  L             
Sbjct: 293 ELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVSSL 349

Query: 132 GDCKSLKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 182
            +  ++  L           P   L  +T L L D A T  P +     S+         
Sbjct: 350 ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 183 FERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFS 236
               P +I      +   +++        ++             T+   +  FS
Sbjct: 410 ALIAPATISDGGSYTEPDITW-NLPSYTNEVSYTFSQP-----VTIGKGTTTFS 457

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 30/199 (15%)

Query: 59  ILLDGTAIEELPSSIGCLSRLLELNLG-----------DCKNLKTL---------PSSLC 98
            +   T I ++  +   L+  ++  LG           D   + TL            + 
Sbjct: 7   TITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVE 65

Query: 99  KLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 158
            L +L +I  + + + ++  P++ L+ L  + + + + +  +  P   L +LT L L + 
Sbjct: 66  YLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLFNN 122

Query: 159 AITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC-ERLQSLPKLPCNL 217
            IT++   L  L++L  L L  N    I  ++  L+ L  L        L+ L  L   L
Sbjct: 123 QITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLT-TL 179

Query: 218 YWLDAQHC--TTLESLSGL 234
             LD      + +  L+ L
Sbjct: 180 ERLDISSNKVSDISVLAKL 198

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 37/242 (15%), Positives = 73/242 (30%), Gaps = 36/242 (14%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
            + +    KL +LNLS    L    ++ S   +  + L+   ++EL         +  L+
Sbjct: 51  AADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLH 105

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDL----------- 131
             +  N+  +  S    +  + I L  + I  L      C S +  LDL           
Sbjct: 106 AANN-NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 132 ---GDCKSLKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 179
                  +L+ L L                L  L L+   +  +       + +  + L 
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 180 RNNFERIPESIIRLSKLSSLLVSY----CERLQSLPKLPCNLYWLDAQHCTTLESLSGLF 235
            N    I +++     L    +      C  L+        +  +  Q    L   +   
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 236 SS 237
            +
Sbjct: 283 CT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 19/209 (9%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLL 80
             + Q+ N+  I  ++    LK        SA N++++ L G  + ++  + +   ++L 
Sbjct: 3   HEIKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 81  ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL 140
            LNL     L      L  L +L  + L  + ++EL        ++  L   +   +   
Sbjct: 62  LLNLSSNV-LYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN-ISR- 113

Query: 141 KLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIP--ESIIRLSKLS 197
            +          +YL +  IT L +   G  S ++ L L+ N  + +   E       L 
Sbjct: 114 -VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 198 SLLVSYCERLQSLPKLPC--NLYWLDAQH 224
            L + Y   +  +        L  LD   
Sbjct: 173 HLNLQYN-FIYDVKGQVVFAKLKTLDLSS 200

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 9e-14
 Identities = 17/175 (9%), Positives = 53/175 (30%), Gaps = 8/175 (4%)

Query: 30  LNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELP--SSIGCLSRLLELNLG 85
                 + L+   K+  L ++       ++ + L    I+ +           L  LNL 
Sbjct: 119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 86  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD 145
               +  +   +     L+ + L+ + +  +    +  + +  + L + K L  ++    
Sbjct: 178 YNF-IYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR 234

Query: 146 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLL 200
              +L +  L                +     + +   +++         + +L 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 19/166 (11%)

Query: 65  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECL 123
           AI E+  +    +R     + D    + L S      +++E+ L+G+ + ++ +  +   
Sbjct: 1   AIHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 124 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 183
           + L +L+L     L       + L +L  L L +  + EL        S+E L+   NN 
Sbjct: 58  TKLELLNLSSNV-LYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNI 111

Query: 184 ERIPESIIRLSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQH 224
            R+  S        ++ ++   ++  L           + +LD + 
Sbjct: 112 SRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRS-RVQYLDLKL 153

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 19/235 (8%)

Query: 20  KTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLD--GTAIEELPSSIGC 75
            +          KL +L+      +  L +  +SS      + L+  G  I  +      
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 76  LSRLLELNLGDCKNLKTLPSSL--CKLKSLEEICLTGSAIEELPSPIE---CLSALCVLD 130
            +    LN G  +NL  +   L    ++SL          E++   +    C  ++  ++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 131 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI 190
           L            F     L  L LT   ++ELP  L  LS+L++L L  N FE + +  
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 191 IR-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHC--TTLESLSGLFSS 237
                 L+ L +    +   L       L  NL  LD  H    T +  +    +
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 49/250 (19%), Positives = 86/250 (34%), Gaps = 25/250 (10%)

Query: 6   KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG 63
            L ++ ++  +I T       +++L+ L  LNLS   +  SL          +E + L  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAF 409

Query: 64  TAIEEL--PSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG----SAIEEL 116
           T ++     S    L  L  LNL     L          L +L+ + L G        + 
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 117 PSPIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEE 175
            + ++ L  L +L L  C  L S+ +  F  L  + ++ L+   +T              
Sbjct: 469 TNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

Query: 176 LYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLPKLPCNLYWLDAQH---------- 224
           L L  N+   I  S++  LS+  ++ +     L         L W               
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQN-PLDCTCSNIYFLEWYKENMQKLEDTEDTL 586

Query: 225 CTTLESLSGL 234
           C     L G+
Sbjct: 587 CENPPLLRGV 596

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 44/263 (16%), Positives = 76/263 (28%), Gaps = 42/263 (15%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 75
           N+     N +    L  L  L+L+ C ++  +                        +   
Sbjct: 43  NVLPTIQNTTF-SRLINLTFLDLTRC-QIYWIH---------------------EDTFQS 79

Query: 76  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDC 134
             RL  L L     +    ++L   K+L+ +    + I  +   P+     L  L LG  
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 135 KSLKSLKLP-FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYL--ERNNFERIPESI 190
             + S+KLP       L  L   + AI  L  E +  L     L L    N+   I    
Sbjct: 140 H-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 191 IRLSKLSSLLVSYCERLQSLPKLPCN-----LYWLDAQHCTTLESLSGLFSSYKC---VF 242
              +   SL     + L  + K   N     L+    +     +    +F          
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 243 FYLNENFKLDRKLRGIVEDALQN 265
             L ++         I  +    
Sbjct: 259 INLQKH-----YFFNISSNTFHC 276

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 37/209 (17%), Positives = 65/209 (31%), Gaps = 29/209 (13%)

Query: 75  CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGD 133
                   N  +   L  +P +L    S E +  + + +  +  +    L  L  LDL  
Sbjct: 10  EKEVNKTYNCENL-GLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR 66

Query: 134 CKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIPESIIR 192
           C+     +  F   + L  L LT   +  +   +L    +L+ L+  +     I    + 
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 193 -LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHC-------TTLESLSGLFSSYK 239
               L SL +     + S+           L  LD Q+          + SL        
Sbjct: 127 NQKTLESLYLGSN-HISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQA----T 180

Query: 240 CVFFYLNENFKLDRKLRGIVEDALQNIQL 268
            +   LN N      + GI   A  +   
Sbjct: 181 NLSLNLNGND-----IAGIEPGAFDSAVF 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.2 bits (229), Expect = 3e-20
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 14/200 (7%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
            + +    KL +LNLS    L    ++ S   +  + L+   ++EL         +  L+
Sbjct: 51  AADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLH 105

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL 142
             +  N+  +  S    +  + I L  + I  L      C S +  LDL   + + ++  
Sbjct: 106 AANN-NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNF 161

Query: 143 P--FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLL 200
                   +L +L L    I ++   + + + L+ L L  N    +       + ++ + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220

Query: 201 VSYCERLQSLPKLPCNLYWL 220
           +    +L  + K       L
Sbjct: 221 LRNN-KLVLIEKALRFSQNL 239

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.7 bits (207), Expect = 2e-17
 Identities = 40/209 (19%), Positives = 77/209 (36%), Gaps = 19/209 (9%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLL 80
             + Q+ N+  I  ++  S LK        SA N++++ L G  + ++  + +   ++L 
Sbjct: 3   HEIKQNGNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 81  ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL 140
            LNL     L      L  L +L  + L  + ++EL        ++  L   +   +   
Sbjct: 62  LLNLSSNV-LYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN-ISR- 113

Query: 141 KLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIP--ESIIRLSKLS 197
            +          +YL +  IT L +   G  S ++ L L+ N  + +   E       L 
Sbjct: 114 -VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 198 SLLVSYCERLQSLPKLPC--NLYWLDAQH 224
            L + Y   +  +        L  LD   
Sbjct: 173 HLNLQYN-FIYDVKGQVVFAKLKTLDLSS 200

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 31/277 (11%), Positives = 81/277 (29%), Gaps = 13/277 (4%)

Query: 30  LNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSS--IGCLSRLLELNLG 85
                 + L+   K+  L ++       ++ + L    I+ +  +        L  LNL 
Sbjct: 119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 86  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD 145
               +  +   +     L+ + L+ + +  +    +  + +  + L + K L  ++    
Sbjct: 178 YNF-IYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR 234

Query: 146 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE 205
              +L +  L                +     + +   +++         + +L      
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 206 RLQSLPK-LPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDR---KLRGIVED 261
             + LP      L  L  +    L          +C         ++D    + R +++ 
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 262 ALQNIQLMATARWKEIR-EKISYPALQGHVVLPGNEI 297
                Q   T   K+   ++      + H  L G   
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 19/166 (11%)

Query: 65  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECL 123
           AI E+  +    +R     + D    + L S      +++E+ L+G+ + ++  + +   
Sbjct: 1   AIHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 124 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 183
           + L +L+L     L    L  + L +L  L L +  + EL        S+E L+   NN 
Sbjct: 58  TKLELLNLSSNV-LYET-LDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNI 111

Query: 184 ERIPESIIRLSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQH 224
            R+  S        ++ ++   ++  L           + +LD + 
Sbjct: 112 SRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRS-RVQYLDLKL 153

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.4 bits (212), Expect = 1e-19
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 29  HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK 88
            +N L  + L+    +  L  I  A NI+ + ++        + I  LS L  L +    
Sbjct: 42  QMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99

Query: 89  NLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFDGL 147
                  +L  L SL  + ++ SA ++   + I  L  +  +DL    ++  +  P   L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTL 158

Query: 148 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 182
             L  L +    + +    +     L +LY     
Sbjct: 159 PELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 32/196 (16%), Positives = 71/196 (36%), Gaps = 11/196 (5%)

Query: 5   GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT 64
           G   Q  + A       P+ +   +LN   +L  S  + +      +   ++  I L   
Sbjct: 1   GAAEQTGLKASQDNVNIPDSTFKAYLNG--LLGQSSTANI----TEAQMNSLTYITLANI 54

Query: 65  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI-EELPSPIECL 123
            + +L + I     + +L + +        + +  L +LE + + G  +  +    +  L
Sbjct: 55  NVTDL-TGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 124 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 183
           ++L +LD+       S+    + L  +  + L+          L  L  L+ L ++ +  
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171

Query: 184 ERIPESIIRLSKLSSL 199
                 I    KL+ L
Sbjct: 172 HDY-RGIEDFPKLNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 11/174 (6%)

Query: 55  NIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE 114
                LL  ++   +  +   ++ L  + L +  N+  L + +    +++++ +      
Sbjct: 24  AYLNGLLGQSSTANI--TEAQMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHAT 79

Query: 115 ELPSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITEL-PESLGLLSS 172
              +PI  LS L  L +     + S K+    GL SLT L ++  A  +     +  L  
Sbjct: 80  NY-NPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 173 LEELYLERNNFERIPESIIRLSKLSSLLVSYCE--RLQSLPKLPCNLYWLDAQH 224
           +  + L  N        +  L +L SL + +      + +   P  L  L A  
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 21/138 (15%), Positives = 54/138 (39%), Gaps = 4/138 (2%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAI-EELPSSIGCLSRLLELNLG 85
           I++ + +  L ++      +   IS   N+E++ + G  +  +   ++  L+ L  L++ 
Sbjct: 62  IEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 86  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD 145
              +  ++ + +  L  +  I L+ +       P++ L  L  L++     +   +   +
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR-GIE 178

Query: 146 GLYSLTYLYLTDCAITEL 163
               L  LY     I   
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 4e-19
 Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 28/247 (11%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG---TAIEELP 70
           N   +       + L  +  + LS   K   L     +   ++++++L       ++  P
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 71  SSIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPSPIECLSALCVL 129
           S    L  L  L+L +  N+  +    L  L+ LE + L  + +  L           + 
Sbjct: 474 SPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWK--HANPGGPIY 530

Query: 130 DLGDCKSLKSLKL-----------PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELY 177
            L     L  L L            F  L+ L  + L    +  LP S      SL+ L 
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 178 LERNNFERIPESIIR--LSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLF 235
           L++N    + + +       L+ L + +     +   +   + W++  H      +  L 
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN----IPELS 646

Query: 236 SSYKCVF 242
           S Y C  
Sbjct: 647 SHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.7 bits (218), Expect = 1e-18
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 5/172 (2%)

Query: 33  LVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLK 91
             + + S   KL  +P+     NI  + L    +  L  ++    S+L  L++G     K
Sbjct: 6   HEVADCSHL-KLTQVPDDLPT-NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 92  TLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSL 150
             P    KL  L+ + L  + + +L        + L  L L      K    PF    +L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 151 TYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 201
             L L+   ++     +   L +L+EL L  N  + +    + +   SSL  
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.4 bits (212), Expect = 7e-18
 Identities = 60/276 (21%), Positives = 109/276 (39%), Gaps = 31/276 (11%)

Query: 15  CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PS 71
            N  +K   P L Q L  L +LNL    +L  L +   +   N+ ++ L   +I+++  +
Sbjct: 58  FNTISKLE-PELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 72  SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP---IECLSALCV 128
                  L+ L+L       T   +  +L++L+E+ L+ + I+ L S    I   S+L  
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 129 LDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITE-LPESLGL---LSSLEELYLERNNF 183
           L+L   + +K      F  +  L  L+L +  +   L E L L    +S+  L L  +  
Sbjct: 176 LELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 184 ERIPESII---RLSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHC--TTLESLSG 233
                +     + + L+ L +SY   L  +       LP  L +   ++     L S S 
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHS- 291

Query: 234 LFSSYKCVFFYLNENFKL----DRKLRGIVEDALQN 265
           L   +   +  L  +F         L  I + + Q 
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 46/252 (18%), Positives = 82/252 (32%), Gaps = 52/252 (20%)

Query: 23  NPSLIQHLNKLVILNLSGC----------SKLKSLPEISSAGNIEKILLDGTAIEEL-PS 71
                  L +L    L               L ++  ++   +  K  +   ++ ++   
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 72  SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALC---- 127
           S   L  L  LN+ D        +    L +L+ + L+ S         E   +L     
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 128 -VLDLGDCK-------------SLKSLKL------------PFDGLYSLTYLYLTDCAIT 161
            +L+L   K              L+ L L             + GL ++  +YL+     
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 162 EL-PESLGLLSSLEELYLERNNFERI---PESIIRLSKLSSLLVSYCERLQSLP-----K 212
           +L   S  L+ SL+ L L R   + +   P     L  L+ L +S    + ++       
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEG 502

Query: 213 LPCNLYWLDAQH 224
           L   L  LD QH
Sbjct: 503 LE-KLEILDLQH 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 5e-13
 Identities = 42/213 (19%), Positives = 73/213 (34%), Gaps = 32/213 (15%)

Query: 6   KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTA 65
            L +++++   I         I   + L  L LS   ++K                    
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFS----------------- 187

Query: 66  IEELPSSIGCLSRLLELNLGDCKNLKTLPSSLC---KLKSLEEICLTGSAIEELPSPI-- 120
               P     + RL  L L + +   +L   LC      S+  + L+ S +    +    
Sbjct: 188 ----PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 121 -ECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELY 177
               + L +LDL     L  +    F  L  L Y +L    I  L   SL  L ++  L 
Sbjct: 244 GLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 178 LERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210
           L + +F +   S+  L K+      + + L+ L
Sbjct: 303 L-KRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 121 ECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLE 179
           +C  +  V D    K L  +  P D   ++T L LT   +  L   +    S L  L + 
Sbjct: 1   KCTVSHEVADCSHLK-LTQV--PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 180 RNNFERIPESIIR-LSKLSSLLVSYCERLQSLP 211
            N   ++   + + L  L  L + +   L  L 
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHN-ELSQLS 89

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.2 bits (219), Expect = 5e-19
 Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 17/207 (8%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
           +  L KL  LN     KL  L  +S    +  +      + E+   +   ++L EL+   
Sbjct: 102 VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHL 157

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 146
            K +  L   +     L  +  + + I EL   +     L  L+      +  L    + 
Sbjct: 158 NKKITKLD--VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKL--DLNQ 210

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER 206
              LT+L  +   +TE+   +  L+ L       N    +  S   LSKL++L     + 
Sbjct: 211 NIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVST--LSKLTTLHCIQTD- 265

Query: 207 LQSLPKLPC-NLYWLDAQHCTTLESLS 232
           L  +       L +  A+ C  ++ L 
Sbjct: 266 LLEIDLTHNTQLIYFQAEGCRKIKELD 292

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 42/236 (17%), Positives = 74/236 (31%), Gaps = 31/236 (13%)

Query: 7   LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAI 66
               + AA  +          + L  L  L+      +  +  I     + K++     I
Sbjct: 20  FASEVAAAFEMQATDTIS--EEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNNI 76

Query: 67  EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP----IEC 122
             L   +   + L  L     K L  L   +  L  L  +    + + +L       +  
Sbjct: 77  TTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131

Query: 123 LSA----LCVLDLGDCKSLKSL---------KLPFDGLYSLTYLYLTDCAITELPESLGL 169
           L+     L  +D+     L  L         KL       LT L  +   ITEL   +  
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQ 189

Query: 170 LSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC-NLYWLDAQH 224
              L  L  + NN  ++  +  +  +L+ L  S   +L  +   P   L + D   
Sbjct: 190 NKLLNRLNCDTNNITKLDLN--QNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSV 242

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 12/174 (6%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
           +  L +L   + S    L  L  +S+   +  +    T + E+  +    ++L+      
Sbjct: 229 VTPLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQTDLLEIDLTH--NTQLIYFQAEG 284

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 146
           C+ +K L   +     L  +    + I EL   +     L  L L + + L  L      
Sbjct: 285 CRKIKELD--VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTE-LTEL--DVSH 337

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLL 200
              L  L   +  I +    +G + +L   +        +P+  +  + L+  +
Sbjct: 338 NTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 55  NIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI 113
           N    +     ++   + S   L+ L  L+  +  ++  +   + KL  L ++  T + I
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMTG-IEKLTGLTKLICTSNNI 76

Query: 114 EELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSL 173
             L   +   + L  L     K L +L      L  LTYL      +T+L  S      L
Sbjct: 77  TTLD--LSQNTNLTYLACDSNK-LTNL--DVTPLTKLTYLNCDTNKLTKLDVS--QNPLL 129

Query: 174 EELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC-NLYWLDAQH 224
             L   RN    I  S    ++L+ L     +++  L   P   L  LD   
Sbjct: 130 TYLNCARNTLTEIDVS--HNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.8 bits (221), Expect = 6e-19
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 33/212 (15%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE-ELPS--SIGCLSRLL 80
            S +  L  L  L LS      S+     + ++  + L   ++   + +  S+G  S L 
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 81  ELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIE-ELPSPIEC---LSALCVLDLGDCK 135
            LN+           S   KL SLE + L+ ++I                L  L +   K
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 136 --------SLKSLK------------LP-FDGLYSLTYLYLTDCAIT-ELPESLGLLSSL 173
                      +L+            +P      +L +L ++   ++ +   ++   + L
Sbjct: 190 ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

Query: 174 EELYLERNNFE-RIPESIIRLSKLSSLLVSYC 204
           + L +  N F   IP     L  L  L ++  
Sbjct: 250 KLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.3 bits (212), Expect = 8e-18
 Identities = 52/271 (19%), Positives = 87/271 (32%), Gaps = 64/271 (23%)

Query: 22  PNPSLIQHLNKLVILNLSGC--SKLKSLPEISSAGNIEKILLDGTAIE-ELPSSI---GC 75
              + +   + L  LN+S         +       ++E + L   +I             
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 76  LSRLLELNL-----------GDCKNLKTL----------PSSLCKLKSLEEICLTGSAIE 114
              L  L +             C NL+ L             L    +L+ + ++G+ + 
Sbjct: 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236

Query: 115 -ELPSPIECLSALCVLDLGD-----------CKSLKSLKL---PFDG---------LYSL 150
            +    I   + L +L++              KSL+ L L    F G           +L
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 151 TYLYLTDCAIT-ELPESLGLLSSLEELYLERNNFE-RIPESII-RLSKLSSLLVSYCERL 207
           T L L+       +P   G  S LE L L  NNF   +P   + ++  L  L +S+    
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EF 355

Query: 208 Q-----SLPKLPCNLYWLDAQHCTTLESLSG 233
                 SL  L  +L  LD        + SG
Sbjct: 356 SGELPESLTNLSASLLTLDLSSN----NFSG 382

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.9 bits (177), Expect = 2e-13
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 43/217 (19%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE-ELPSSIG-CLSRL 79
           P      + L  L LS  +    LP   +     ++ + L       ELP S+    + L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370

Query: 80  LELNLGDCKNLK-TLPSSLCK--LKSLEEI-----CLTGSAIEELPSPIECLSALCVLDL 131
           L L+L    N    +  +LC+    +L+E+       TG    ++P  +   S L  L L
Sbjct: 371 LTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHL 425

Query: 132 -------------GDCKSLKSLKLP---FDG--------LYSLTYLYLTDCAIT-ELPES 166
                        G    L+ LKL     +G        + +L  L L    +T E+P  
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 167 LGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVS 202
           L   ++L  + L  N     IP+ I RL  L+ L +S
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 7e-12
 Identities = 41/221 (18%), Positives = 74/221 (33%), Gaps = 49/221 (22%)

Query: 68  ELPSSIGCLSRLLELNL------------GDCKNLKTL-------------PSSLCKLKS 102
            + SS+  L+ L  L L                +L +L              +SL     
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 103 LEEICLTGSAIE-ELPSPIEC-LSALCVLDLGDCK---SLKSLKLPFDGLYSLTYLYLTD 157
           L+ + ++ + ++          L++L VLDL       +     +  DG   L +L ++ 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 158 CAIT-ELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQ-----SL 210
             I+ ++   +    +LE L +  NNF   IP  +   S L  L +S   +L      ++
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN-KLSGDFSRAI 243

Query: 211 PKLPCNLYWLDAQHCTTLESLSGLFSSYKC---VFFYLNEN 248
                 L  L+           G           +  L EN
Sbjct: 244 STCT-ELKLLNISSN----QFVGPIPPLPLKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 27/195 (13%)

Query: 24  PSLIQHLNKLVILNLSGCS----------KLKSLPEISSAGNIEKILLDGTAIEELPSSI 73
           P  I  L  L IL LS  S            +SL  +    N    L +GT    +P+++
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN----LFNGT----IPAAM 558

Query: 74  GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLD 130
              S  +  N             +      +E    G+ +E        +  LS     +
Sbjct: 559 FKQSGKIAANFIA----GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 131 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT-ELPESLGLLSSLEELYLERNNFE-RIPE 188
           +            FD   S+ +L ++   ++  +P+ +G +  L  L L  N+    IP+
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674

Query: 189 SIIRLSKLSSLLVSY 203
            +  L  L+ L +S 
Sbjct: 675 EVGDLRGLNILDLSS 689

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 8e-11
 Identities = 30/205 (14%), Positives = 59/205 (28%), Gaps = 47/205 (22%)

Query: 24  PSLIQHLNKLVIL-----NLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSR 78
           P+ +     L+ L       +G     ++P  ++       +       +    I     
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNG-----TIP--AAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 79  LLELNLGDCKNLKT--LPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDL---- 131
             E +               L +L +     +T            +   ++  LD+    
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643

Query: 132 ---------GDCKSLKSLKL---PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 179
                    G    L  L L      G                +P+ +G L  L  L L 
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISG---------------SIPDEVGDLRGLNILDLS 688

Query: 180 RNNFE-RIPESIIRLSKLSSLLVSY 203
            N  + RIP+++  L+ L+ + +S 
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSN 713

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 7e-10
 Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 73  IGC-LSRLLELNLGDC---KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV 128
           + C   ++  ++L           + SSL  L  LE + L+ S I    S  +C ++L  
Sbjct: 45  VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 129 LDLGDCKSLKSLKLPFDG----LYSLTYLYLTDCAIT-ELPESLGL-LSSLEELYLERNN 182
           LDL    SL S  +           L +L ++   +      S GL L+SLE L L  N+
Sbjct: 105 LDLSRN-SL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 183 FE-RIPESIIRLSKLSSL 199
                    +       L
Sbjct: 163 ISGANVVGWVLSDGCGEL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 6e-19
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 12/185 (6%)

Query: 28  QHLNKLVILNLSGCS-KLKSLPEISSAG--NIEKILLDGTAIEELPSSIGCLSRLLELNL 84
             L  L  L+LS      K     S  G  +++ + L    +  + S+   L +L  L+ 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 85  GDCKNLKTLP--SSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLK 141
                LK +   S    L++L  + ++ +      + I   LS+L VL +      +   
Sbjct: 404 QHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENF 461

Query: 142 LP--FDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPESII-RLSKLS 197
           LP  F  L +LT+L L+ C + +L  +    LSSL+ L +  N  + +P+ I  RL+ L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521

Query: 198 SLLVS 202
            + + 
Sbjct: 522 KIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.5 bits (204), Expect = 6e-17
 Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 11/198 (5%)

Query: 6   KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-EISSAGNIEKILLDGT 64
            L  + ++   +  K            L  L+LS    + ++         +E +    +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS 406

Query: 65  AIEELP--SSIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPSP-- 119
            ++++   S    L  L+ L++    + +   +     L SLE + + G++ +E   P  
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 120 IECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELY 177
              L  L  LDL  C+ L+ L    F+ L SL  L +    +  +P+     L+SL++++
Sbjct: 466 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 178 LERNNFERIPESIIRLSK 195
           L  N ++     I  LS+
Sbjct: 525 LHTNPWDCSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 5e-15
 Identities = 46/214 (21%), Positives = 79/214 (36%), Gaps = 21/214 (9%)

Query: 41  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSS 96
           C       +P+ +    + + + L    +  L S S      L  L+L  C  ++T+   
Sbjct: 14  CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDG 70

Query: 97  LC-KLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYL 153
               L  L  + LTG+ I+ L       LS+L  L   +   L SL   P   L +L  L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKEL 129

Query: 154 YLTDCAITEL--PESLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVS---YCERL 207
            +    I     PE    L++LE L L  N  + I  + +R L ++  L +S       +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 208 QSLPKLP---CNLYWLDAQHCT-TLESLSGLFSS 237
             +         L+ L  ++   +L  +      
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 51/282 (18%), Positives = 97/282 (34%), Gaps = 54/282 (19%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 75
           N      + S      +L +L+LS C +++++                        +   
Sbjct: 38  NPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIE---------------------DGAYQS 74

Query: 76  LSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGD 133
           LS L  L L     +++L   +   L SL+++    + +  L + PI  L  L  L++  
Sbjct: 75  LSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 134 CKSLKSLKLP--FDGLYSLTYLYLTDCAITELP-ESLGLLSSLE----ELYLERNNFERI 186
              ++S KLP  F  L +L +L L+   I  +    L +L  +      L L  N    I
Sbjct: 134 NL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 187 PESIIRLSKLSSLLVSYCERLQSLPKLPC--------------------NLYWLDAQHCT 226
                +  +L  L +       ++ K                       NL   D     
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 227 TLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQL 268
            L +L+        + +YL++   L   L  +   +L ++ +
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 45/218 (20%), Positives = 74/218 (33%), Gaps = 20/218 (9%)

Query: 20  KTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSA----GNIEKILLDGTAIEELPSSIGC 75
           +  + S ++ L  L I           L +I        N+    L    IE +      
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 76  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK 135
                 L L +C      P+   KLKSL+ +  T +      S ++ L +L  LDL    
Sbjct: 304 FG-WQHLELVNC-KFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNG 358

Query: 136 --SLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII-- 191
                       G  SL YL L+   +  +  +   L  LE L  + +N +++ E  +  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 192 RLSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQH 224
            L  L  L +S+    +         L  +L  L    
Sbjct: 419 SLRNLIYLDISHT-HTRVAFNGIFNGLS-SLEVLKMAG 454

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 133 DCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESII 191
            C  L   K+P +  +S   L L+   +  L   S      L+ L L R   + I +   
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 192 R-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHC 225
           + LS LS+L+++    +QSL       L  +L  L A   
Sbjct: 73  QSLSHLSTLILTGN-PIQSLALGAFSGLS-SLQKLVAVET 110

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 20/229 (8%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEI--SSAGNIEKILLDGTAIEELPSSI-GCLSRL 79
              +   L+ L  L++S   K+  L +       N++ + +    +  +       L+ L
Sbjct: 96  PLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154

Query: 80  LELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSL 137
            +L L  C NL ++P+ +L  L  L  + L    I  +     + L  L VL++     L
Sbjct: 155 EQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 138 KSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LSK 195
            ++        +LT L +T C +T +P  ++  L  L  L L  N    I  S++  L +
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 196 LSSLLVSYCERLQSLPK-----LPCNLYWLDAQHC--TTLESLSGLFSS 237
           L  + +    +L  +       L   L  L+      TTLE    +F S
Sbjct: 274 LQEIQLVGG-QLAVVEPYAFRGLN-YLRVLNVSGNQLTTLE--ESVFHS 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 30/190 (15%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRL 79
           +      LN L  L L  C  L S+P   +S    +  + L    I  +       L RL
Sbjct: 144 SHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 80  LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLG------ 132
             L +     L T+  +     +L  + +T   +  +P   +  L  L  L+L       
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 133 -------DCKSLKSLKL-----------PFDGLYSLTYLYLTDCAITELPESL-GLLSSL 173
                  +   L+ ++L            F GL  L  L ++   +T L ES+   + +L
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 174 EELYLERNNF 183
           E L L+ N  
Sbjct: 323 ETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 75  CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGD 133
           C ++   +     K    +P  +        + L  + I+ L          L  L+L +
Sbjct: 9   CSAQDRAVLCHR-KRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 134 CKSLKSLKL-PFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIPESII 191
              + +++   F+ L++L  L L    +  +P      LS+L +L +  N    + + + 
Sbjct: 66  NI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 192 R-LSKLSSLLVSYCERLQSLP 211
           + L  L SL V     L  + 
Sbjct: 125 QDLYNLKSLEVGDN-DLVYIS 144

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 24  PSLIQHLNKLVILNLSGCS-KLKSLPEISSAG--NIEKILLDGTAIEELPSSIGCLSRLL 80
             +   L +L  L+LS      K     S  G  +++ + L    +  + S+   L +L 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104

Query: 81  ELNLGDCKNLKTLPSS--LCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSL 137
            L+     NLK +        L++L  + ++ +      + I   LS+L VL +      
Sbjct: 105 HLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 138 KSLK-LPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LS 194
           ++     F  L +LT+L L+ C + +L   +   LSSL+ L +  NNF  +     + L+
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 195 KLSSLLVSYCERLQSLPK-----LPCNLYWLDAQH 224
            L  L  S    + +  K      P +L +L+   
Sbjct: 224 SLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.1 bits (167), Expect = 8e-13
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 86  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKL 142
            C  K L ++P+ +    S   + L  + ++ LP  + + L+ L  L L     L     
Sbjct: 13  RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGC 69

Query: 143 P---FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII--RLSKLS 197
                 G  SL YL L+   +  +  +   L  LE L  + +N +++ E  +   L  L 
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 198 SLLVSYCERLQSLPK-----LPCNLYWLDAQHCTTLESL-SGLFSS 237
            L +S+    +         L  +L  L     +  E+    +F+ 
Sbjct: 130 YLDISHT-HTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTE 173

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 48/164 (29%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
              +   L+ L +L ++G S  ++                       P     L  L  L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFL---------------------PDIFTELRNLTFL 180

Query: 83  NLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK 141
           +L  C+ L+ L   +   L SL+ + ++ +    L +                       
Sbjct: 181 DLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----------------------- 216

Query: 142 LPFDGLYSLTYLYLTDCAITELPESL--GLLSSLEELYLERNNF 183
            P+  L SL  L  +   I    +       SSL  L L +N+F
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.7 bits (214), Expect = 2e-18
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 10/173 (5%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
           IQ+L  +  L L+G  KL  +  +++  N+  + LD   I++L SS+  L +L  L+L  
Sbjct: 61  IQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEH 118

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 146
              +  + + L  L  LE + L  + I ++ + +  L+ L  L L D + +  +  P  G
Sbjct: 119 N-GISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIV-PLAG 173

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 199
           L  L  LYL+   I++L  +L  L +L+ L L        P +    S L   
Sbjct: 174 LTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPIN--HQSNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.2 bits (205), Expect = 3e-17
 Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 34/243 (13%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
                + +  NL     +      +   +I++I+ + + I+ +              +  
Sbjct: 17  DDAFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNSDIKSVQ------------GIQY 63

Query: 87  CKNLKTLP---------SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL 137
             N+  L            L  LK+L  + L  + I++L S ++ L  L  L L     +
Sbjct: 64  LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNG-I 121

Query: 138 KSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLS 197
             +      L  L  LYL +  IT++   L  L+ L+ L LE N    I   +  L+KL 
Sbjct: 122 SDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQ 178

Query: 198 SLLVSYC--ERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKL 255
           +L +S      L++L  L  NL  L+               +++      N     D  L
Sbjct: 179 NLYLSKNHISDLRALAGLK-NLDVLELFSQE----CLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 256 RGI 258
              
Sbjct: 234 VTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 9e-11
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 103 LEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 162
           + E     + I+++  P +  +     +L   KS+       + L S+  +   +  I  
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKK-KSVTDAV-TQNELNSIDQIIANNSDIKS 57

Query: 163 LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC--ERLQSLPKLPCNLYWL 220
           + + +  L ++ +L+L  N    I + +  L  L  L +     + L SL  L   L  L
Sbjct: 58  V-QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLK-KLKSL 114

Query: 221 DAQHC--TTLESLSGL 234
             +H   + +  L  L
Sbjct: 115 SLEHNGISDINGLVHL 130

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.0 bits (208), Expect = 4e-18
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 10/187 (5%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
           +Q+LN L+ L L    ++  L  + +   I ++ L G  ++ + S+I  L  +  L+L  
Sbjct: 59  VQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTS 116

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 146
                T  + L  L +L+ + L  + I  + SP+  L+ L  L +G+ + +  L  P   
Sbjct: 117 --TQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQ-VSDLT-PLAN 171

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER 206
           L  LT L   D  I+++   L  L +L E++L+ N    +   +   S L  + ++    
Sbjct: 172 LSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQ-T 228

Query: 207 LQSLPKL 213
           + + P  
Sbjct: 229 ITNQPVF 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 12/214 (5%)

Query: 37  NLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSS 96
           +++  + +  +    +  N  KI    + + +   +   L  +  L+      + T+   
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGT-GVTTI-EG 58

Query: 97  LCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT 156
           +  L +L  + L  + I +L +P++ L+ +  L+L     LK++     GL S+  L LT
Sbjct: 59  VQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT 115

Query: 157 DCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC--ERLQSLPKLP 214
              IT++   L  LS+L+ LYL+ N    I   +  L+ L  L +       L  L  L 
Sbjct: 116 STQITDV-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLS 173

Query: 215 CNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNEN 248
             L  L A     +  +S L S    +  +L  N
Sbjct: 174 -KLTTLKADD-NKISDISPLASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.2 bits (167), Expect = 7e-13
 Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
           I  L  +  L+L+   ++  +  ++   N++ + LD   I  + S +  L+ L  L++G+
Sbjct: 103 IAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGN 160

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 146
            + +  L + L  L  L  +    + I ++ SP+  L  L  + L + + +  +  P   
Sbjct: 161 AQ-VSDL-TPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQ-ISDVS-PLAN 215

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI 190
             +L  + LT+  IT  P        +  +    +     P +I
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.0 bits (210), Expect = 8e-18
 Identities = 32/204 (15%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
               Q    L  L LS   +L  +  +S   ++    +    +  L         + EL+
Sbjct: 164 DDTFQATTSLQNLQLSSN-RLTHVD-LSLIPSLFHANVSYNLLSTLAI----PIAVEELD 217

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL-KL 142
                ++  +   +     L  + L  + + +    +     L  +DL   + L+ +   
Sbjct: 218 ASHN-SINVVRGPVNV--ELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE-LEKIMYH 272

Query: 143 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 202
           PF  +  L  LY+++  +  L      + +L+ L L  N+   +  +  +  +L +L + 
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332

Query: 203 YCERLQSLPK--LPCNLYWLDAQH 224
           +   + +L        L  L   H
Sbjct: 333 HN-SIVTLKLSTHH-TLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.6 bits (209), Expect = 1e-17
 Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 40/232 (17%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRLL 80
           P + Q++  L +L L     L SLP     +   +  + +    +E +        + L 
Sbjct: 116 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 81  ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL--------- 131
            L L     L  +  SL  + SL    ++ + +  L  PI    A+  LD          
Sbjct: 175 NLQLSSN-RLTHVDLSL--IPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVR 227

Query: 132 -GDCKSLKSLKL---------PFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLER 180
                 L  LKL                L  + L+   + ++       +  LE LY+  
Sbjct: 228 GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 181 NNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 232
           N    +      +  L  L +S+   L  + +        +      LE+L 
Sbjct: 288 NRLVALNLYGQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.7 bits (191), Expect = 2e-15
 Identities = 30/183 (16%), Positives = 69/183 (37%), Gaps = 9/183 (4%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
           S +     +  L+ S    +  +    +   +  + L    + +    +     L+E++L
Sbjct: 205 STLAIPIAVEELDASHN-SINVVRGPVNV-ELTILKLQHNNLTDTAW-LLNYPGLVEVDL 261

Query: 85  GDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
              + L+ +      K++ LE + ++ + +  L    + +  L VLDL     L  ++  
Sbjct: 262 SYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN 319

Query: 144 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 203
                 L  LYL   +I  L   L    +L+ L L  N+++      +    ++   V  
Sbjct: 320 QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDD 376

Query: 204 CER 206
            ++
Sbjct: 377 ADQ 379

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 4e-11
 Identities = 28/149 (18%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 68  ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSAL 126
            + S++       ++++               L + + +    S + +LP+ + +    +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 127 CVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCAITELPESLGL-LSSLEELYLERNNFE 184
            +L+L D + ++ +    F   +++  LY+   AI  LP  +   +  L  L LERN+  
Sbjct: 78  ELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 185 RIPESI-IRLSKLSSLLVSYCERLQSLPK 212
            +P  I     KL++L +S    L+ +  
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNN-NLERIED 164

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 32/204 (15%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
               Q    L  L LS   +L  +  +S   ++    +    +  L         + EL+
Sbjct: 158 DDTFQATTSLQNLQLSSN-RLTHVD-LSLIPSLFHANVSYNLLSTLAI----PIAVEELD 211

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL-KL 142
                ++  +   +     L  + L  + + +    +     L  +DL   + L+ +   
Sbjct: 212 ASHN-SINVVRGPV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE-LEKIMYH 266

Query: 143 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 202
           PF  +  L  LY+++  +  L      + +L+ L L  N+   +  +  +  +L +L + 
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

Query: 203 YCERLQSLPK--LPCNLYWLDAQH 224
           +   + +L        L  L   H
Sbjct: 327 HN-SIVTLKLSTHH-TLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 30/183 (16%), Positives = 69/183 (37%), Gaps = 9/183 (4%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
           S +     +  L+ S    +  +    +   +  + L    + +    +     L+E++L
Sbjct: 199 STLAIPIAVEELDASHN-SINVVRGPVNV-ELTILKLQHNNLTDTAW-LLNYPGLVEVDL 255

Query: 85  GDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
              + L+ +      K++ LE + ++ + +  L    + +  L VLDL     L  ++  
Sbjct: 256 SYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN 313

Query: 144 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 203
                 L  LYL   +I  L   L    +L+ L L  N+++      +    ++   V  
Sbjct: 314 QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDD 370

Query: 204 CER 206
            ++
Sbjct: 371 ADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 6/148 (4%)

Query: 69  LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALC 127
           + S++       ++++               L + + +    S + +LP+ + +    + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 128 VLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPESLGL-LSSLEELYLERNNFER 185
           +L+L D + ++ +    F   +++  LY+   AI  LP  +   +  L  L LERN+   
Sbjct: 73  LLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 186 IPESIIR-LSKLSSLLVSYCERLQSLPK 212
           +P  I     KL++L +S    L+ +  
Sbjct: 132 LPRGIFHNTPKLTTLSMSNN-NLERIED 158

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.3 bits (201), Expect = 3e-17
 Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 28/197 (14%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
           +      LN +  +  +    +KS+  I    N+ K+ L+G  + ++   +  L  L  L
Sbjct: 38  DAVTQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWL 95

Query: 83  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK------- 135
            L + K +K L SSL  LK L+ + L  + I ++ + +  L  L  L LG+ K       
Sbjct: 96  FLDENK-VKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVL 152

Query: 136 ----SLKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 182
                L +L L         P  GL  L  LYL+   I++L  +L  L +L+ L L    
Sbjct: 153 SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE 211

Query: 183 FERIPESIIRLSKLSSL 199
               P +    S L   
Sbjct: 212 CLNKPIN--HQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 9e-15
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 30/209 (14%)

Query: 29  HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK 88
              + +  NL   S +      +   +I++I+ + + I+ +              +    
Sbjct: 22  AFAETIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDIKSVQ------------GIQYLP 68

Query: 89  NLKTLP---------SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKS 139
           N+  L            L  LK+L  + L  + +++L S ++ L  L  L L     +  
Sbjct: 69  NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG-ISD 126

Query: 140 LKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 199
           +      L  L  LYL +  IT++   L  L+ L+ L LE N    I   +  L+KL +L
Sbjct: 127 IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNL 183

Query: 200 LVSYC--ERLQSLPKLPCNLYWLDAQHCT 226
            +S      L++L  L  NL  L+     
Sbjct: 184 YLSKNHISDLRALAGLK-NLDVLELFSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 6/162 (3%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
           ++ L KL  L+L     +  +  +     +E + L    I ++ + +  L++L  L+L D
Sbjct: 108 LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED 165

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 146
            + +  +   L  L  L+ + L+ + I +L   +  L  L VL+L   + L         
Sbjct: 166 NQ-ISDI-VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE 188
           L     +  TD ++   PE +      E+  ++ +  E   E
Sbjct: 223 LVVPNTVKNTDGSLVT-PEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 10/126 (7%)

Query: 113 IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSS 172
           I+++    +  +     +L   KS+       + L S+  +   +  I  + + +  L +
Sbjct: 14  IKQI-FSDDAFAETIKDNLKK-KSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPN 69

Query: 173 LEELYLERNNFERIPESIIRLSKLSSLLVSYC--ERLQSLPKLPCNLYWLDAQHC--TTL 228
           + +L+L  N    I + +  L  L  L +     + L SL  L   L  L  +H   + +
Sbjct: 70  VTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLK-KLKSLSLEHNGISDI 127

Query: 229 ESLSGL 234
             L  L
Sbjct: 128 NGLVHL 133

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 3e-17
 Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 19/218 (8%)

Query: 33  LVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKN 89
             +LNL    +++ +   S     ++E + L    I  +       L+ L  L L D   
Sbjct: 66  TRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-R 123

Query: 90  LKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKL-PFDG 146
           L T+P+ +   L  L+E+ L  + IE +PS     + +L  LDLG+ K L  +    F+G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCE 205
           L +L YL L  C + E+P +L  L  L+EL L  N+   I     + L  L  L +    
Sbjct: 184 LSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS- 241

Query: 206 RLQSLPK-----LPCNLYWLDAQHCTTLESLS-GLFSS 237
           ++Q + +     L  +L  ++  H   L  L   LF+ 
Sbjct: 242 QIQVIERNAFDNLQ-SLVEINLAHN-NLTLLPHDLFTP 277

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 27/163 (16%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
                 +  L  L+L    +L  +                        +   LS L  LN
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYIS---------------------EGAFEGLSNLRYLN 191

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSL-K 141
           L  C NL+ +P +L  L  L+E+ L+G+ +  +     + L  L  L +   + ++ + +
Sbjct: 192 LAMC-NLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIER 248

Query: 142 LPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNF 183
             FD L SL  + L    +T LP      L  LE ++L  N +
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 117 PSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEE 175
           PS   C +    +     K+L+ +  P     +   L L +  I  +   S   L  LE 
Sbjct: 36  PSVCSCSNQFSKVICVR-KNLREV--PDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 176 LYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLP 211
           L L RN+   I       L+ L++L +    RL ++P
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIP 128

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 3e-17
 Identities = 53/239 (22%), Positives = 84/239 (35%), Gaps = 23/239 (9%)

Query: 41  CS--KLKSLPEISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSL 97
           C    L  +PE+ +  ++  + L   +I EL   S   L  L  L +        + ++ 
Sbjct: 17  CINRGLHQVPELPA--HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 98  C-KLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKLP---FDGLYSLTY 152
              L SL  + L  +   +L +     L+ L VL L  C  L    L    F  L SL  
Sbjct: 75  FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEM 133

Query: 153 LYLTDCAITEL-PESL-GLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210
           L L D  I ++ P S    +     L L  N  + I E    L        +   RL S+
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED--LLNFQGKHFTLL-RLSSI 190

Query: 211 PKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLM 269
                N YWL  + C      + + +        L+ N      +     DA+   ++ 
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITT------LDLSGN-GFKESMAKRFFDAIAGTKIQ 242

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 6e-13
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 14/188 (7%)

Query: 8   NQIIMAACNIFTKTPNPSLIQHL---NKLVILNLSGCSKLKSLPEISSAG----NIEKIL 60
           N    +    F      + IQ L   N   + +  G +  K     +  G     ++   
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 61  LDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPS 118
           L  + I  L  S+    + L +L L     +  +   +   L  L ++ L+ + +  + S
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

Query: 119 PI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEE 175
            + E L  L VLDL     +++L    F GL +L  L L    +  +P+     L+SL++
Sbjct: 341 RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399

Query: 176 LYLERNNF 183
           ++L  N +
Sbjct: 400 IWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 86  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL 142
            C  + L  +P     +  ++   L+ ++I EL       L  L  L +        ++ 
Sbjct: 16  ICINRGLHQVPELPAHVNYVD---LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN 72

Query: 143 -PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFE--RIPESI-IRLSKLS 197
             F GL SL  L L      +L       L++LE L L + N +   +  +    L+ L 
Sbjct: 73  NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132

Query: 198 SLLVSYCERLQSLP 211
            L++     ++ + 
Sbjct: 133 MLVLRDN-NIKKIQ 145

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.9 bits (205), Expect = 4e-17
 Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 13/231 (5%)

Query: 3   HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLD 62
                N+++     I   +        LN L   N S    +  L ++ +   I ++ + 
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHIP 294

Query: 63  GTAIEELPSSIGC-LSRLLELNLGDCKNLKTLPSSLCK-LKSLEEICLTGSAIEEL---- 116
              +    S++   L ++  + + + K +  +P S  + LKSLE + L+ + + E     
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 117 PSPIECLSALCVLDLGDCK--SLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLE 174
            +      +L  L L      S++        L +LT L ++      +P+S      + 
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413

Query: 175 ELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC 225
            L L       +   I     L  L VS    L S       L  L     
Sbjct: 414 FLNLSSTGIRVVKTCI--PQTLEVLDVSNN-NLDSFSLFLPRLQELYISRN 461

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 42/247 (17%), Positives = 83/247 (33%), Gaps = 35/247 (14%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
              ++    L +L L    ++ ++                        +   L  L  L+
Sbjct: 43  HGDLRACANLQVLILKSS-RINTIE---------------------GDAFYSLGSLEHLD 80

Query: 84  LGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPSP--IECLSALCVLDLGDCKSLKSL 140
           L D  +L +L SS    L SL+ + L G+  + L        L+ L  L +G+ ++   +
Sbjct: 81  LSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 141 -KLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPESII-RLSKLS 197
            ++ F GL SL  L +   ++     +SL  +  +  L L  +    + E     LS + 
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 198 SLLVSYC------ERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKL 251
            L +              + ++   +  L  +     +               L+E    
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 252 DRKLRGI 258
           D  L G+
Sbjct: 260 DCTLNGL 266

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 14/167 (8%)

Query: 22  PNPSLIQHLNKLVILNLSGCSKLKSLPEISSA----GNIEKILLDGTAIEELPSSIGCLS 77
            N +       L  L LS    L+S+ +         N+  + +       +P S     
Sbjct: 352 KNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410

Query: 78  RLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL 137
           ++  LNL     ++ + +  C  ++LE + ++ + ++        L  L  L +   K L
Sbjct: 411 KMRFLNLSST-GIRVVKT--CIPQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNK-L 463

Query: 138 KSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNF 183
           K+L         L  + ++   +  +P+     L+SL++++L  N +
Sbjct: 464 KTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 36/279 (12%), Positives = 78/279 (27%), Gaps = 58/279 (20%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPS-S 72
           N +      SL  +L  L  L +        +  I  AG  ++ ++ +   ++    S S
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 73  IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDL 131
           +  +  +  L L   ++   L      L S+  + L  + +     SP+        +  
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 132 GDCK-------SLKSLKLPFDGLYSLTYLYLTDCAITEL--------------------- 163
              +       S   L      +  L+ +   DC +  L                     
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 164 ---------------PESLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCERL 207
                               LL  ++ + +E +    +P S  + L  L  L +S    +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-LM 346

Query: 208 QSLPKLPC-------NLYWLDAQHC--TTLESLSGLFSS 237
                          +L  L        +++    +  +
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 86  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKSL-K 141
           D   ++  ++PS L    +++ + L+ + I  +    +   + L VL L   + + ++  
Sbjct: 11  DGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEG 67

Query: 142 LPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPESII--RLSKLSS 198
             F  L SL +L L+D  ++ L  S  G LSSL+ L L  N ++ +  + +   L+ L +
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 199 LLVSYCERLQSLPK 212
           L +   E    + +
Sbjct: 128 LRIGNVETFSEIRR 141

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 5e-17
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 20/230 (8%)

Query: 33  LVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKN 89
              LNL   + ++ +   +     ++E + L   +I ++       L+ L  L L D   
Sbjct: 77  TRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-W 134

Query: 90  LKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDG 146
           L  +PS +   L  L E+ L  + IE +PS     + +L  LDLG+ K L+ + +  F+G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCE 205
           L++L YL L  C I ++P +L  L  LEEL +  N+F  I       LS L  L V    
Sbjct: 195 LFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS- 252

Query: 206 RLQSLPK-----LPCNLYWLDAQHCTTLESLS-GLFSSYKC-VFFYLNEN 248
           ++  + +     L  +L  L+  H   L SL   LF+  +  V  +L+ N
Sbjct: 253 QVSLIERNAFDGLA-SLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 27/163 (16%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83
                 +  L+ L+L    KL+ +                        +   L  L  LN
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYIS---------------------EGAFEGLFNLKYLN 202

Query: 84  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSL-K 141
           LG C N+K +P +L  L  LEE+ ++G+   E+       LS+L  L + + + +  + +
Sbjct: 203 LGMC-NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIER 259

Query: 142 LPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNF 183
             FDGL SL  L L    ++ LP      L  L EL+L  N +
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 117 PSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEE 175
           PS   C +    +     + L  +  P     +  YL L +  I  +   +   L  LE 
Sbjct: 47  PSVCSCSNQFSKVVCTR-RGLSEV--PQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEV 103

Query: 176 LYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLP 211
           L L RN+  +I       L+ L++L +     L  +P
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIP 139

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 5e-17
 Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 19/213 (8%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAG----NIEKILLDGTAIEELPSSIGCLSRLLEL 82
              L  L  L+LS    L      S +     ++  + L       + ++   L  L  L
Sbjct: 346 KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404

Query: 83  NLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKS 139
           +      LK +   S+   L+ L  + ++ +  +     I   L++L  L +      K 
Sbjct: 405 DFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKD 462

Query: 140 LKLP--FDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LSK 195
             L   F    +LT+L L+ C + ++       L  L+ L +  NN   +  S    L  
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 196 LSSLLVSYCERLQSLP----KLPCNLYWLDAQH 224
           LS+L  S+  R+++        P +L + +  +
Sbjct: 523 LSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 32/209 (15%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 75
           N      + S   + ++L  L+LS C +++++                        +   
Sbjct: 42  NPLKILKSYSF-SNFSELQWLDLSRC-EIETIE---------------------DKAWHG 78

Query: 76  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDC 134
           L  L  L L         P S   L SLE +    + +  L S PI  L  L  L++   
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 135 KSLKSLKLP--FDGLYSLTYLYLTDCAITELPESL-----GLLSSLEELYLERNNFERIP 187
             + S KLP  F  L +L ++ L+   I  +  +              L +  N  + I 
Sbjct: 139 F-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197

Query: 188 ESIIRLSKLSSLLVSYCERLQSLPKLPCN 216
           +   +  KL  L +       ++ K    
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 10/168 (5%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL---LDGTAIEELPSSI-GCLSRL 79
            +    L +L  L+    S LK + E S+  ++EK+L   +  T  +     I   L+ L
Sbjct: 392 SANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 80  LELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSL 137
             L +          S+      +L  + L+   +E++     + L  L +L++     L
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-L 509

Query: 138 KSL-KLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNF 183
             L    ++ LYSL+ L  +   I            SL    L  N+ 
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 43/254 (16%), Positives = 87/254 (34%), Gaps = 42/254 (16%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
           +      L  +  ++L+G   +K L ++      + + +    +++ P+    L  L  L
Sbjct: 277 DIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSL 333

Query: 83  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 142
            L    N  ++      L SL  + L+ +A+                    C S   L  
Sbjct: 334 TLTM--NKGSISFKKVALPSLSYLDLSRNALSFSG----------------CCSYSDLGT 375

Query: 143 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII--RLSKLSSLL 200
                 SL +L L+      +  +   L  L+ L  + +  +R+ E      L KL  L 
Sbjct: 376 N-----SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 201 VSYCERLQSLP-----KLPCNLYWLDAQHCTTLESL-SGLFSSYKCVFF-YLNENFKLDR 253
           +SY    +         L  +L  L     +  ++  S +F++   + F  L++      
Sbjct: 431 ISYT-NTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC----- 483

Query: 254 KLRGIVEDALQNIQ 267
           +L  I       + 
Sbjct: 484 QLEQISWGVFDTLH 497

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 21/223 (9%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAG------NIEKILLDGTAIEEL 69
           N       P+   +L  LV ++LS    ++++                 + +    I+ +
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

Query: 70  PSSIGCLSRLLELNLGDCKNLKTLPSSLCK-LKSLEEICLTGSAIEELPS----PIECLS 124
                   +L EL L    N   +  +  + L  L    L     ++  +        + 
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 125 ALC-----VLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 179
            LC        L          + F  L +++ + L   +I  L   +      + L + 
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSII 315

Query: 180 RNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC-NLYWLD 221
           R   ++ P     L  L SL ++  +   S  K+   +L +LD
Sbjct: 316 RCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 133 DCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPESII 191
            C   K  K+P D   S   + L+   +  L   S    S L+ L L R   E I +   
Sbjct: 17  QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76

Query: 192 R-LSKLSSLLVSYCERLQSLP 211
             L  LS+L+++    +QS  
Sbjct: 77  HGLHHLSNLILTGN-PIQSFS 96

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 38/216 (17%), Positives = 84/216 (38%), Gaps = 25/216 (11%)

Query: 3   HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK-SLP-EISSAGNIEKIL 60
              ++N + ++  N+    P PS + +L  L  L + G + L   +P  I+    +  + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 61  LDGTAIE-ELPSSIGCLSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICL-----TGSAI 113
           +  T +   +P  +  +  L+ L+      L  TLP S+  L +L  I       +G+  
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGA-- 164

Query: 114 EELPSPIECLSALC-VLDLGDCKSLKSL--KLPFD-GLYSLTYLYLTDCAIT-ELPESLG 168
             +P      S L   + +        L  K+P      +L ++ L+   +  +     G
Sbjct: 165 --IPDSYGSFSKLFTSMTISRN----RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 169 LLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSY 203
              + ++++L +N+    +   +     L+ L +  
Sbjct: 219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN 253

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 30/150 (20%)

Query: 69  LPSSIGCLSRLLELNLGDCKNL---KTLPSSLCKLKSLEEICL------TGSAIEELPSP 119
           L  +     R+  L+L    NL     +PSSL  L  L  + +       G     +P  
Sbjct: 42  LCDTDTQTYRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPA 96

Query: 120 IECLSALCVLDLGDCK-------SLKSLKLPFDGLYSLTYLYLTDCAIT-ELPESLGLLS 171
           I  L+ L  L +            L  +K       +L  L  +  A++  LP S+  L 
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIK-------TLVTLDFSYNALSGTLPPSISSLP 149

Query: 172 SLEELYLERNNFE-RIPESIIRLSKLSSLL 200
           +L  +  + N     IP+S    SKL + +
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 55  NIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI 113
           + + + L    +  L   S      L  L+L  C+       +   L  L  + LTG+ I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 114 EELPSP-IECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCAIT--ELPESLGL 169
           + L       LS+L  L   +  +L SL+  P   L +L  L +    I   +LPE    
Sbjct: 89  QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 170 LSSLEELYLERNNFERI-PESIIRLSKLSSLLVS 202
           L++LE L L  N  + I    +  L ++  L +S
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 11/197 (5%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL--PSSI 73
            +  K            L  L+LS    +           +E +    + ++++   S  
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 74  GCLSRLLELNLGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLD 130
             L  L+ L++    + +         L SLE + + G++ +E  LP     L  L  LD
Sbjct: 418 LSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 131 LGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPE 188
           L  C+ L+ L    F+ L SL  L ++      L       L+SL+ L    N+     +
Sbjct: 477 LSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 189 SIIR--LSKLSSLLVSY 203
             ++   S L+ L ++ 
Sbjct: 536 QELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 32/209 (15%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 75
           N      + S      +L +L+LS C              I+ I            +   
Sbjct: 38  NPLRHLGSYSF-FSFPELQVLDLSRC-------------EIQTIE---------DGAYQS 74

Query: 76  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDC 134
           LS L  L L           +   L SL+++    + +  L   PI  L  L  L++   
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 135 KSLKSLKLP--FDGLYSLTYLYLTDCAITEL-PESLGLLSSLE----ELYLERNNFERIP 187
             ++S KLP  F  L +L +L L+   I  +    L +L  +      L L  N    I 
Sbjct: 135 L-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 188 ESIIRLSKLSSLLVSYCERLQSLPKLPCN 216
               +  +L  L +       ++ K    
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 20/221 (9%)

Query: 20  KTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSA----GNIEKILLDGTAIEELPSSIGC 75
           K  N      L  L  L+LS  + L      S +     +++ + L    +  + S+   
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 76  LSRLLELNLGDCKNLKTL--PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLG 132
           L +L  L+     NLK +   S    L++L  + ++ +            LS+L VL + 
Sbjct: 395 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 133 DCKSLKSLKLP--FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPES 189
              S +   LP  F  L +LT+L L+ C + +L P +   LSSL+ L +  NNF  +   
Sbjct: 454 GN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 190 IIR-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQH 224
             + L+ L  L  S    + +         P +L +L+   
Sbjct: 513 PYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 43/218 (19%), Positives = 66/218 (30%), Gaps = 20/218 (9%)

Query: 20  KTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSA----GNIEKILLDGTAIEELPSSIGC 75
           +  + S ++ L  L I           L +I        N+    L    IE +      
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY- 302

Query: 76  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK 135
                 L L +CK  +     L  LK L      G            L +L  LDL    
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG----NAFSEVDLPSLEFLDLSRNG 358

Query: 136 SLKSLKLP--FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFER-IPESIIR 192
                       G  SL YL L+   +  +  +   L  LE L  + +N ++    S+  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 193 -LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQH 224
            L  L  L +S+    +         L  +L  L    
Sbjct: 419 SLRNLIYLDISHT-HTRVAFNGIFNGLS-SLEVLKMAG 454

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 26/172 (15%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 75
           +   +    S+   L  L+ L++S     +                              
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF---------------------NGIFNG 443

Query: 76  LSRLLELNLGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGD 133
           LS L  L +      +   P    +L++L  + L+   +E+L P+    LS+L VL++  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 134 CKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL--GLLSSLEELYLERNNF 183
                    P+  L SL  L  +   I    +       SSL  L L +N+F
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 21/228 (9%)

Query: 24  PSLIQHLNKLVILNLSGC--SKLKSLPEISSAGNIEKILLDGTAIEEL-PSSIGCLSRL- 79
              I HL  L  LN++       K     S+  N+E + L    I+ +  + +  L ++ 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 80  ---LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI--EELPSPIECLSALCVLDLGDC 134
              L L+L     +  +     K   L ++ L  +      + + I+ L+ L V  L   
Sbjct: 177 LLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 135 KSLKSLKLP------FDGLYSLTYLYLT----DCAITELPESLGLLSSLEELYLERNNFE 184
           +      L        +GL +LT         D  + ++ +    L+++    L     E
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 185 RIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 232
           R+            L +  C+  Q       +L  L         + S
Sbjct: 296 RVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 19/212 (8%)

Query: 41  CSKLKSLPEISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPS-SLC 98
           C  ++ +P +    + + + L  T +  +PS +   L  +  + +     L+ L S S  
Sbjct: 20  CKDIQRIPSLPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 99  KLKSLEEICLTGS-AIEELPSPI-ECLSALCVLDLGDCKSLKSL--KLPFDGLYSLTYLY 154
            L  +  I +  +  +  +     + L  L  L + +   LK                L 
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILE 136

Query: 155 LTD-CAITELPESL--GLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP 211
           +TD   +T +P +   GL +    L L  N F  +       +KL ++ ++  + L  + 
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 212 -----KLPCNLYWLDAQHCTTLESL-SGLFSS 237
                 +      LD    T++ +L S     
Sbjct: 197 KDAFGGVYSGPSLLDVSQ-TSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 28  QHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP--SSIGCLSRLLELN 83
            +L+K+  + +     L  +    +     ++ + +  T ++  P  + +        L 
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136

Query: 84  LGDCKNLKTLPS-SLCKLKS-LEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL- 140
           + D   + ++P  +   L +    + L  +    +       + L  + L   K L  + 
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 141 KLPFDGLYS-LTYLYLTDCAITELPESLGLLSSLEELYLERNNF 183
           K  F G+YS  + L ++  ++T LP     L  L+EL   RN +
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIA-RNTW 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.2 bits (188), Expect = 8e-16
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 10/173 (5%)

Query: 27  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86
              L   V  NL     +  L        ++    D + I+ L + +   + L EL+L  
Sbjct: 15  DPGLANAVKQNLGKQ-SVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSH 72

Query: 87  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 146
            + +  L S L  L  LEE+ +  + ++ L + I     L  L L + + L+        
Sbjct: 73  NQ-ISDL-SPLKDLTKLEELSVNRNRLKNL-NGIPSAC-LSRLFLDNNE-LRDTD-SLIH 126

Query: 147 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 199
           L +L  L + +  +  +   LG LS LE L L  N        + RL K++ +
Sbjct: 127 LKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWI 177

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 113 IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSS 172
           I ++  P   L+     +LG    +  L      L  +      +  I  L   +   ++
Sbjct: 9   INQV-FPDPGLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNIQSL-AGMQFFTN 64

Query: 173 LEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLP-CNLYWLDAQHC--TTLE 229
           L+EL+L  N    +   +  L+KL  L V+   RL++L  +P   L  L   +      +
Sbjct: 65  LKELHLSHNQISDL-SPLKDLTKLEELSVNRN-RLKNLNGIPSACLSRLFLDNNELRDTD 122

Query: 230 SLSGL 234
           SL  L
Sbjct: 123 SLIHL 127

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 55/233 (23%), Positives = 83/233 (35%), Gaps = 34/233 (14%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSSI-GCLSRL 79
                  L+ L +LNLS    L  L   +  G   +  I L    I  +       L +L
Sbjct: 306 ADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 80  LELNLGDCK--------NLKTLPSSLCKLKSLEEICLTGS-------AIEELP--SPIEC 122
             L+L D          ++  +  S  KL +L +I LT +        +E L     +  
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 123 LSALCVLDLGDCKSLKSLKLP--FDGLYSLTYLYLTDCAITELPES------LGLLSSLE 174
           +  L +L L   +   S           SL  L+L +  +    E+         LS L+
Sbjct: 425 VPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 175 ELYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLPK--LPCNLYWLDAQH 224
            LYL  N    +P  +   L+ L  L ++   RL  L    LP NL  LD   
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 42/263 (15%), Positives = 79/263 (30%), Gaps = 36/263 (13%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS----SAGNIEKILLDGTAIEELPS 71
           N             LN L  ++ S   ++  + E          +    L   ++    S
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 72  S--IGCLSRLLELNL---------------GDCKNL--KTLPSSLCKLKSLEEICLTGSA 112
                C++    + L               G+  N   K+   SL     +         
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 113 IEELPSPI---ECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLG 168
           I++           S++  LDL            F+ L  L  L L    I ++ + +  
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311

Query: 169 LLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLP----KLPCNLYWLDAQ 223
            L +L+ L L  N    +  S    L K++ + +     +  +     K    L  LD +
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLR 370

Query: 224 HCTTLESLSGLFSSYKCVFFYLN 246
               L ++  +  S   +F   N
Sbjct: 371 DN-ALTTIHFI-PSIPDIFLSGN 391

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 42/255 (16%), Positives = 72/255 (28%), Gaps = 36/255 (14%)

Query: 6   KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGC--SKLKSLPEISSAGNIEKILLDG 63
            L ++ +  C +          ++L  L  L+LS      L   P      +++ I    
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 64  TAIEELPSSI---GCLSRLLELNLGDCKNLKTLPSSLCKL------KSLEEICLTGSAIE 114
             I  +            L   +L        +     K         LE + ++G+   
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 115 ELPSPI--ECLSALCVLDLGDCKSLKSLKL-----------PFDGL--YSLTYLYLTDCA 159
              +      +S      L     +                 F GL   S+ +L L+   
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277

Query: 160 ITEL-PESLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLPKLPCNL 217
           +  L       L  L+ L L  N   +I +     L  L  L +SY   L  L     N 
Sbjct: 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELY--SSNF 334

Query: 218 YWLDAQHCTTLESLS 232
           Y L       +  + 
Sbjct: 335 YGL-----PKVAYID 344

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 43/225 (19%), Positives = 77/225 (34%), Gaps = 37/225 (16%)

Query: 35  ILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTL 93
           I     C+ L  +P++ +    E++LL    I  + +S    L +L  L LG      T+
Sbjct: 8   IAFYRFCN-LTQVPQVLN--TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 94  PSSLCK-LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY 152
                + L +L  + L  S I  L                           F GL+ L  
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDA-----------------------FQGLFHLFE 101

Query: 153 LYLTDCAITEL---PESLGLLSSLEELYLERNNFERIPE--SIIRLSKLSSLLVSYCERL 207
           L L  C +++          L +L  L L +N    +    S  +L+ L S+  S   ++
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QI 160

Query: 208 QSLPKLPCNLYWLDAQHCTTLE-SLSGLFSSYKCVFFYLNENFKL 251
             +      L  L  +  +    + + L+S     +      F+ 
Sbjct: 161 FLVC--EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 33/216 (15%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL---P 70
                T +    ++L  L IL+L    K+  L         ++ ++ L    + +     
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 71  SSIGCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIEELP----SPIECLS 124
                L  L  L+L     +++L    S  KL SL+ I  + + I  +      P++  +
Sbjct: 117 GYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 125 ALCVLDLGDCKSLKSLKLPFDGLY------SLTYLYLTDCAITELPE------------- 165
            L    L        + + +           L  L ++    T                 
Sbjct: 176 -LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 166 SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 201
           SL L   +       +N +   ++       SS+  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 39/234 (16%), Positives = 61/234 (26%), Gaps = 72/234 (30%)

Query: 9   QIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE 68
           QI++   N F+             L  L L                     L      E 
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENM-----------------LQLAWETEL 471

Query: 69  LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV 128
                  LS L  L L     L +LP  +                               
Sbjct: 472 CWDVFEGLSHLQVLYLNHN-YLNSLPPGV------------------------------- 499

Query: 129 LDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE 188
                          F  L +L  L L    +T L  +  L ++LE L + RN       
Sbjct: 500 ---------------FSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNP 543

Query: 189 SIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVF 242
            +     LS L +++ + +       C L         T  +++G  +   CV+
Sbjct: 544 DV--FVSLSVLDITHNKFICE-----CELSTFINWLNHTNVTIAGPPADIYCVY 590

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.9 bits (179), Expect = 3e-14
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 10/195 (5%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSSI 73
           N   +     +  +L KL  + +   + L  +   +     N++ +L+  T I+ LP   
Sbjct: 64  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 74  GC-LSRLLELNLGDCKNLKTLPS-SLCKLKS-LEEICLTGSAIEELPSPIECLSALCVLD 130
                + + L++ D  N+ T+   S   L      + L  + I+E+ +     + L  L+
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 131 LGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPE 188
           L D  +L+ L    F G      L ++   I  LP   L  L  L        N +++P 
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP- 240

Query: 189 SIIRLSKLSSLLVSY 203
           ++ +L  L    ++Y
Sbjct: 241 TLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 9e-13
 Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 12/181 (6%)

Query: 41  CS--KLKSLPEISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSS- 96
           C   K+  +P      N  ++    T +  +          L ++ +     L+ + +  
Sbjct: 16  CQESKVTEIPSDLPR-NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 97  LCKLKSLEEICLTGS-AIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYL 153
              L  L EI +  +  +  +     + L  L  L + +   +K L  +          L
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLL 133

Query: 154 YLTD-CAITELPESL--GLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210
            + D   I  +  +   GL      L+L +N  + I  S    ++L  L +S    L+ L
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 211 P 211
           P
Sbjct: 194 P 194

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 20/147 (13%)

Query: 133 DCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNF-ERIPESI 190
            C+  K  ++P D   +   L      +  + + +      LE++ + +N+  E I   +
Sbjct: 15  LCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 191 IR-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFY 244
              L KL  + +     L  +       LP NL +L   + T ++ L  +         +
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLISN-TGIKHLPDV------HKIH 126

Query: 245 LNENFKLD----RKLRGIVEDALQNIQ 267
             +   LD      +  I  ++   + 
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLS 153

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)

Query: 41  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPS- 95
           C    L+++P  I +    ++I L G  I  +P++       L  L L     L  + + 
Sbjct: 18  CPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAA 74

Query: 96  SLCKLKSLEEICLTG-SAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTY 152
           +   L  LE++ L+  + +  +       L  L  L L  C  L+ L    F GL +L Y
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQY 133

Query: 153 LYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSL 210
           LYL D A+  LP+ +   L +L  L+L  N    +PE   R L  L  LL+    R+  +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHV 192

Query: 211 PK 212
             
Sbjct: 193 HP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 43/203 (21%)

Query: 28  QHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNL 84
             L  L  L+LS  ++L+S+        G +  + LD   ++EL   +   L+ L  L L
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 85  GDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
            D   L+ LP  +   L +L  + L G+ I  +P                          
Sbjct: 137 QDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERA----------------------- 172

Query: 144 FDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLV 201
           F GL+SL  L L    +  +   +   L  L  LYL  NN   +P   +  L  L  L +
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 202 S----YCERLQSLPKLPCNLYWL 220
           +     C+         C    L
Sbjct: 233 NDNPWVCD---------CRARPL 246

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 133 DCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESII 191
            C       +P     +   ++L    I+ +P  S     +L  L+L  N   RI  +  
Sbjct: 17  SCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 192 R-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHCTTLESL-SGLFS 236
             L+ L  L +S   +L+S+       L   L+ L    C  L+ L  GLF 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRC-GLQELGPGLFR 126

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 18/192 (9%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEK----ILLDGTAIEELPSSI-GCLSR 78
            S  + L+ L  LNL G    K+L E S   ++ K     + +     ++       L+ 
Sbjct: 117 SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175

Query: 79  LLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGD--C 134
           L EL +    +L++    SL  ++++  + L       L     +  S++  L+L D   
Sbjct: 176 LEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 135 KSLKSLKLP------FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE 188
            +    +L           ++   + +TD ++ ++ + L  +S L EL   RN  + +P+
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294

Query: 189 SII-RLSKLSSL 199
            I  RL+ L  +
Sbjct: 295 GIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 25/237 (10%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRLL 80
            S +Q    L  L L+    + ++ E   SS G++E + L    +  L SS    LS L 
Sbjct: 69  NSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127

Query: 81  ELNLGDCKNLKTLP--SSLCKLKSLEEI-CLTGSAIEELPSPI-ECLSALCVLDLGDCKS 136
            LNL      KTL   S    L  L+ +         ++       L+ L  L++     
Sbjct: 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD- 185

Query: 137 LKSL-KLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESII--- 191
           L+S        + ++++L L       L E  + + SS+E L L   + +    S +   
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 192 ---RLSKLSSL--LVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS-GLFSSYK 239
               L K  +   +    E L  + KL      L  L+      L+S+  G+F    
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLT 301

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 16/182 (8%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-S 72
           N +      SL  HL KL IL +        +     +    +E++ +D + ++     S
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 73  IGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICL-----TGSAIEELPS----PIEC 122
           +  +  +  L L        L    +    S+E + L           EL +     +  
Sbjct: 194 LKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 123 LSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERN 181
                 + + D  SL  +    + +  L  L  +   +  +P+     L+SL++++L  N
Sbjct: 253 KFTFRNVKITDE-SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

Query: 182 NF 183
            +
Sbjct: 312 PW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 86  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-K 141
                +L ++PS L   ++++ + L+ + I  + +   +    L  L L     + ++ +
Sbjct: 37  KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEE 93

Query: 142 LPFDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIPESII--RLSKLSS 198
             F  L SL +L L+   ++ L  S    LSSL  L L  N ++ + E+ +   L+KL  
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 199 LLVSYCERLQSLP 211
           L V   +    + 
Sbjct: 154 LRVGNMDTFTKIQ 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 15/168 (8%)

Query: 2   QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKI 59
            H  KL  + +   + FTK         L  L  L +     L+S     + S  N+  +
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHL 203

Query: 60  LLDGTAIEELPSSI-GCLSRLLELNLGD----CKNLKTLPS----SLCKLKSLEEICLTG 110
           +L       L        S +  L L D      +   L +    SL K  +   + +T 
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 111 SAIEELPSPIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTD 157
            ++ ++   +  +S L  L+    + LKS+    FD L SL  ++L  
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHT 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 11/180 (6%)

Query: 30  LNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSSIGCLS--RLLELNLG 85
            + LV L +    +++ +P+   +G  N+  I + G  +E      G     +L  L + 
Sbjct: 122 PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 86  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLP 143
           +   L  +P  L   ++L E+ L  + I+ +        S L  L LG  + ++ +    
Sbjct: 181 EA-KLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGS 236

Query: 144 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 203
              L +L  L+L +  ++ +P  L  L  L+ +YL  NN  ++  +             Y
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 18/190 (9%)

Query: 24  PSLIQHLNKLVILNLSG-CSKLKSLPEISSAG-NIEKILLDGTAIEELPSSIGCLSRLLE 81
             +   L  +  + + G   +       +  G  +  + +    +  +P        L E
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNE 197

Query: 82  LNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKS 139
           L+L   K ++ +    L +   L  + L  + I  + +     L  L  L L + K L  
Sbjct: 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSR 255

Query: 140 LKLPFDGLYSLTYLYLTDCAITELPES-------LGLLSSLEELYLERNN--FERIPESI 190
           +      L  L  +YL    IT++  +           +    + L  N   +  +  + 
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 191 IR-LSKLSSL 199
            R ++   ++
Sbjct: 316 FRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 74  GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLG 132
           GC   L  +   D   LK +P  +        + L  + I EL     + L  L  L L 
Sbjct: 30  GCHCHLRVVQCSD-LGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLV 86

Query: 133 DCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII 191
           + K +  + +  F  L  L  LY++   + E+P    L SSL EL +  N   ++P+ + 
Sbjct: 87  NNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVPKGV- 142

Query: 192 RLSKLSSLLV 201
             S L ++  
Sbjct: 143 -FSGLRNMNC 151

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 37/158 (23%)

Query: 32  KLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNL 90
           KL  L +S   KL  +P+      + ++ LD   I+ +    +   S+L  L LG  + +
Sbjct: 173 KLNYLRISEA-KLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-I 229

Query: 91  KTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD---------------- 133
           + + + SL  L +L E+ L  + +  +P+ +  L  L V+ L                  
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289

Query: 134 ---CKSLKSLKLP-------------FDGLYSLTYLYL 155
                    + L              F  +     +  
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 23/216 (10%)

Query: 41  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGC--LSRLLELNLGDCKNLKTLPS 95
           CS  +L ++P+ + S      + L    +  L +      L+ L  L L     L  + S
Sbjct: 25  CSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISS 81

Query: 96  -SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTY 152
            +   + +L  + L+ + +  L   +   L AL VL L +   +  + +  F+ +  L  
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQK 140

Query: 153 LYLTDCAITELPE----SLGLLSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERL 207
           LYL+   I+  P         L  L  L L  N  +++P + + +L       +     L
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL----YL 196

Query: 208 QSLP-KLPCNLYWLDAQ-HCTTLESLSGLFSSYKCV 241
            + P +  C LY L +      L S+        C+
Sbjct: 197 HNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCM 232

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 11/171 (6%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 75
           N+       + +    +L  LNL    +L  L    +   +  + L    ++ LP     
Sbjct: 41  NLLYTFS-LATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT 98

Query: 76  LSRLLELNLGDCKNLKTLPSSL-CKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGD 133
           L  L  L++   + L +LP      L  L+E+ L G+ ++ LP  +      L  L L +
Sbjct: 99  LPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 134 CKSLKSLKLP---FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERN 181
              L  L  P    +GL +L  L L + ++  +P+       L   +L  N
Sbjct: 158 NN-LTEL--PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 14/154 (9%)

Query: 75  CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGD 133
            ++  LE+N    +NL  LP  L   K    + L+ + +           + L  L+L  
Sbjct: 8   KVASHLEVNCDK-RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 134 CKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII-R 192
            + L  L+     L  L  L L+   +  LP     L +L  L +  N    +P   +  
Sbjct: 65  AE-LTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 193 LSKLSSLLVSYCERLQSLP-----KLPCNLYWLD 221
           L +L  L +     L++LP       P  L  L 
Sbjct: 123 LGELQELYLKGN-ELKTLPPGLLTPTP-KLEKLS 154

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 22/184 (11%)

Query: 41  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSS 96
           CS  KL ++P  I +  + +K+ L    +  LPS     L++L  L L D   L+TLP+ 
Sbjct: 23  CSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAG 79

Query: 97  LC-KLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKLP---FDGLYSLT 151
           +  +LK+LE + +T + ++ LP  + + L  L  L L   + LKSL  P   FD L  LT
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSL--PPRVFDSLTKLT 136

Query: 152 YLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERL 207
           YL L    +  LP+  G+   L+SL+EL L  N  +R+PE    +L++L +L +    +L
Sbjct: 137 YLSLGYNELQSLPK--GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQL 193

Query: 208 QSLP 211
           + +P
Sbjct: 194 KRVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 23/192 (11%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSI-G 74
           NI   T    L    NKL  L      +L  L           + L+   ++ LP+ I  
Sbjct: 34  NIPADTKKLDL--QSNKLSSLPSKAFHRLTKL---------RLLYLNDNKLQTLPAGIFK 82

Query: 75  CLSRLLELNLGDCKNLKTLPSSL-CKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLG 132
            L  L  L + D K L+ LP  +  +L +L E+ L  + ++ LP  + + L+ L  L LG
Sbjct: 83  ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141

Query: 133 DCKSLKSLKLP---FDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIPE 188
             + L+SL  P   FD L SL  L L +  +  +PE     L+ L+ L L+ N  +R+PE
Sbjct: 142 YNE-LQSL--PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198

Query: 189 SII-RLSKLSSL 199
                L KL  L
Sbjct: 199 GAFDSLEKLKML 210

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.6 bits (172), Expect = 4e-13
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 8/176 (4%)

Query: 25  SLIQHLNKLVILNLS--GCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
           ++I  +  L  L           +L  +          L    + E        + +  L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 83  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 142
           +L    +L  L   L +L  +  + L+ + +  LP  +  L  L VL   D   L+++  
Sbjct: 447 HLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD- 502

Query: 143 PFDGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPESIIRLSKL 196
               L  L  L L +  + +      L     L  L L+ N+  +      RL+++
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 7e-10
 Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 29/226 (12%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 75
           +   +     +    +      L          + ++   + +  L       L S +  
Sbjct: 311 DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELES 370

Query: 76  LSRLLELNLGDCKNLKTL---PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALC---- 127
              L EL   +   L T+     +L  L   +E     S ++ + P     L  L     
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 430

Query: 128 ---VLDLGDCKSLKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEE 175
               +   +   ++ L L           + L  +T+L L+   +  LP +L  L  LE 
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490

Query: 176 LYLERNNFERIPESIIRLSKLSSLLVSY--------CERLQSLPKL 213
           L    N  E +   +  L +L  LL+           + L S P+L
Sbjct: 491 LQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 30/198 (15%)

Query: 20  KTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRL 79
             P   + +  + + I N +  S  + +                            +S  
Sbjct: 289 GFPQSYIYEIFSNMNIKNFT-VSGTRMVHM---------------------LCPSKISPF 326

Query: 80  LELNLGDCKNLKTLPSSLC-KLKSLEEICLTGSAIEELPSPIEC---LSALCVLDLGDCK 135
           L L+  +   L       C  L  LE + L  + ++EL    E    + +L  LD+    
Sbjct: 327 LHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 136 SLKSL-KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLS 194
                 K       SL  L ++   +T+      L   ++ L L  N  + IP+ +++L 
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKSIPKQVVKLE 444

Query: 195 KLSSLLVSYCERLQSLPK 212
            L  L V+   +L+S+P 
Sbjct: 445 ALQELNVASN-QLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 12/170 (7%)

Query: 35  ILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKT 92
           +++ S    L  +P+ +S       + +    I EL +S I  LS+L  L +   + ++ 
Sbjct: 4   LVDRSKNG-LIHVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQY 59

Query: 93  LPSSLC-KLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP--FDGLYS 149
           L  S+    + LE + L+ + + ++         L  LDL       +L +   F  +  
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNA-FDALPICKEFGNMSQ 116

Query: 150 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 199
           L +L L+   + +         ++ ++ L         E    L   ++ 
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 7/201 (3%)

Query: 17  IFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCL 76
           +F        I  ++   + NL   S +K + E +       IL       +L +     
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 77  SRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIEC-LSALCVLDLGDCK 135
                 +      L    +++    S+  + L G             L AL +  +    
Sbjct: 230 IETTWNSFIRILQLV-WHTTVWYF-SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 136 SLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESII-RL 193
                   ++   ++     T      +       +S    L    N            L
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347

Query: 194 SKLSSLLVSYCERLQSLPKLP 214
           ++L +L++    +L+ L K+ 
Sbjct: 348 TELETLILQMN-QLKELSKIA 367

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 19/222 (8%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLL 80
             S I  L+KL IL +S   +++ L          +E + L    + ++         L 
Sbjct: 37  WTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLK 93

Query: 81  ELNLGDCKNLKTLPSS--LCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSL 137
            L+L        LP       +  L+ + L+ + +E+    PI  L+   VL +     L
Sbjct: 94  HLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV-----L 147

Query: 138 KSLKLPFDGLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERNNFERIPESIIRL 193
                  +    L         I          +  +S      LE +N + + E     
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 194 SKLSSLL-VSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL 234
             LS L  +    +L +L        W        L   + +
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 33/204 (16%)

Query: 28  QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGD 86
             L KL  L LS  ++LK LPE      ++++ +    I ++  S+   L++++ + LG 
Sbjct: 97  APLVKLERLYLSK-NQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 87  CKNLKTL---PSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD---------- 133
              LK+      +   +K L  I +  + I  +P       +L  L L            
Sbjct: 155 NP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAAS 211

Query: 134 ---CKSLKSLKL-----------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 179
                +L  L L                  L  L+L +  + ++P  L     ++ +YL 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271

Query: 180 RNNFERIPESIIRLSKLSSLLVSY 203
            NN   I  +       ++   SY
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASY 295

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 14/165 (8%)

Query: 28  QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGD 86
           Q + KL  + ++    + ++P+     ++ ++ LDG  I ++ + S+  L+ L +L L  
Sbjct: 168 QGMKKLSYIRIADT-NITTIPQGLPP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 87  CKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD------CKSLKS 139
              +  + + SL     L E+ L  + + ++P  +     + V+ L +        +   
Sbjct: 226 NS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 140 LKLPFDGLYSLTYLYLTDCAITEL---PESLGLLSSLEELYLERN 181
                    S + + L    +      P +   +     + L   
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 11/120 (9%)

Query: 86  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKSLKL 142
            C    L+ +P  L        + L  + I E+     + L  L  L L + K +  +  
Sbjct: 37  QCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISP 93

Query: 143 P-FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 201
             F  L  L  LYL+   + ELPE   +  +L+EL +  N   ++ +S+   + L+ ++V
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSV--FNGLNQMIV 149

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 119 PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELY 177
           P  C    C L +  C  L   K+P D       L L +  ITE+ +     L +L  L 
Sbjct: 26  PFRCQ---CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82

Query: 178 LERNNFERIPESIIR-LSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQH 224
           L  N   +I       L KL  L +S   +L+ LP+ +P  L  L    
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHE 130

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.0 bits (153), Expect = 9e-11
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 16/194 (8%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEI--SSAGNIEKILLDGTAIEELPSSI 73
            +F  +   +L     ++ I  LS  S    +  +   S  +   +        +     
Sbjct: 315 QVFLFSK-EALYSVFAEMNIKMLSI-SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 74  -GCLSRLLELNLGDCKNLKTLPS---SLCKLKSLEEICLTGSAIEELPSPIEC--LSALC 127
              L RL  L L     LK           + SLE + ++ +++        C    ++ 
Sbjct: 373 CSTLKRLQTLIL-QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 128 VLDLGDCKSLKSLKLPFDGL-YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI 186
           VL+L       S    F  L   +  L L +  I  +P+ +  L +L+EL +  N  + +
Sbjct: 432 VLNLSSNMLTGS---VFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488

Query: 187 PESII-RLSKLSSL 199
           P+ +  RL+ L  +
Sbjct: 489 PDGVFDRLTSLQYI 502

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 14/163 (8%)

Query: 30  LNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDC 87
            +    LN +             S+   ++ ++L    ++           +  L   D 
Sbjct: 352 PSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 88  KNLKTLPS----SLCKL-KSLEEICLTGSAIEELPSPIECLSA-LCVLDLGDCKSLKSLK 141
             L +L S      C   +S+  + L+ + +    S   CL   + VLDL + + + S+ 
Sbjct: 411 S-LNSLNSHAYDRTCAWAESILVLNLSSNMLTG--SVFRCLPPKVKVLDLHNNR-IMSIP 466

Query: 142 LPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNF 183
                L +L  L +    +  +P+     L+SL+ ++L  N +
Sbjct: 467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 21/217 (9%)

Query: 61  LDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLPSSLC-KLKSLEEICLTGSAIEELPS 118
           L   +I EL    I  LS L  L L   + +++L   +    + LE + ++ + ++ +  
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISC 117

Query: 119 PIECLSALCVLDLGDCKSLKSLKLP--FDGLYSLTYLYLTDCAITELP-------ESLGL 169
               +++L  LDL        L +   F  L  LT+L L+     +L            +
Sbjct: 118 --CPMASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI 174

Query: 170 LSSLEELYLERNNFERIPES-----IIRLSKLSSLLVSYCERLQSLPKLP-CNLYWLDAQ 223
           L  L   +++    E +         +     S   V     + +L  L   N+   D  
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 224 HCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVE 260
               +  LS L      +   L       +    + +
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 16  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL-LDGTAIEELPSSI- 73
           N+FT +        L +L  L L   + LK+  +++        L     ++  L S   
Sbjct: 363 NVFTDSV-FQGCSTLKRLQTLILQR-NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 74  ----GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 129
                    +L LNL       ++   L     ++ + L  + I  +P  +  L AL  L
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSIPKDVTHLQALQEL 478

Query: 130 DLGDCKSLKSL-KLPFDGLYSLTYLYLT----DCA 159
           ++     LKS+    FD L SL Y++L     DC 
Sbjct: 479 NVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 35/179 (19%)

Query: 41  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSS 96
           C       +P+ +    + + + L    +  L S        L  L+L  C+ ++T+   
Sbjct: 14  CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG 70

Query: 97  LC-KLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL 155
               L  L  + LTG+ I+ L                           F GL SL  L  
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGA-----------------------FSGLSSLQKLVA 107

Query: 156 TDCAITELPESL-GLLSSLEELYLERNNFERIPESII--RLSKLSSLLVSYCERLQSLP 211
            +  +  L     G L +L+EL +  N  +          L+ L  L +S   ++QS+ 
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 38/193 (19%)

Query: 24  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRLL 80
                   +L +L+LS C +++++ +    S  ++  ++L G  I+ L       LS L 
Sbjct: 45  SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 81  ELNLGDCKNLKTLPSSL-CKLKSLEEICLTGSAIEELPSP--IECLSALCVLDLGDCK-- 135
           +L   +   L +L +     LK+L+E+ +  + I+    P     L+ L  LDL   K  
Sbjct: 104 KLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 136 --------SLKSLKLP------------------FDGLYSLTYLYLTDCAITELPE-SLG 168
                    L  + L                   F  +  L  L L    +  +P+    
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFD 221

Query: 169 LLSSLEELYLERN 181
            L+SL++++L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 8   NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTA 65
           N I   A   F+   +         L  L       L SL          ++++ +    
Sbjct: 86  NPIQSLALGAFSGLSS---------LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL 135

Query: 66  IEELPSSIGC--LSRLLELNLGDCKNLKTLP----SSLCKLKSLE-EICLTGSAIEELPS 118
           I+          L+ L  L+L   K ++++       L ++  L   + L+ + +  +  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 119 PIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTD 157
                  L  L L   + LKS+    FD L SL  ++L  
Sbjct: 195 GAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 28/207 (13%)

Query: 35  ILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP 94
            L + G S L+ L        +E + + GTA   L         L  LNL +  +  T  
Sbjct: 88  ALRVLGISGLQEL-------TLENLEVTGTAPPPLLE--ATGPDLNILNLRNV-SWATRD 137

Query: 95  SSL-----CKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLP----F 144
           + L          L+ + +  +         +    AL  LDL D   L    L      
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 145 DGLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERNNFERIPESII--RLSKLSS 198
               +L  L L +  +                L+ L L  N+      +      S+L+S
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 199 LLVSYCERLQSLPK-LPCNLYWLDAQH 224
           L +S+   L+ +PK LP  L  LD  +
Sbjct: 258 LNLSFT-GLKQVPKGLPAKLSVLDLSY 283

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 40/205 (19%), Positives = 63/205 (30%), Gaps = 37/205 (18%)

Query: 15  CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGN-----IEKILLDGTAIEEL 69
             +    P P L      L ILNL   S       ++         ++ + +        
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 70  P-SSIGCLSRLLELNLGDCKNL--KTLPSSLC--KLKSLEEICLTGSAIEELPSPIECLS 124
               +     L  L+L D   L  + L S+LC  K  +L+ + L  + +E        L+
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 125 A----LCVLDL-----------GDCKSLKSLK-----------LPFDGLYSLTYLYLTDC 158
           A    L  LDL             C     L            +P      L+ L L+  
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYN 284

Query: 159 AITELPESLGLLSSLEELYLERNNF 183
            +   P    L   +  L L+ N F
Sbjct: 285 RLDRNPSPDEL-PQVGNLSLKGNPF 308

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 51/181 (28%), Positives = 94/181 (51%), Gaps = 17/181 (9%)

Query: 28  QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDC 87
             LN +  +  +  S +KS+  I    N+  + L G  + ++ + +  L+ L  L L   
Sbjct: 38  NELNSIDQIIANN-SDIKSVQGIQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTG- 94

Query: 88  KNLKTLPSSL-CKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKLP-- 143
             L++LP+ +  KL +L+E+ L  + ++ LP  + + L+ L  L+L   + L+SL  P  
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSL--PKG 151

Query: 144 -FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLSKLSS 198
            FD L +LT L L+   +  LPE  G+   L+ L++L L +N  + +P+ +  RL+ L  
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209

Query: 199 L 199
           +
Sbjct: 210 I 210

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 41  CS--KLKSLP-EISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPS-- 95
            S    +  P +  +     K  L   ++ +  +    L+ + ++   +  ++K++    
Sbjct: 5   VSTPIKQIFPDDAFAET--IKANLKKKSVTDAVTQNE-LNSIDQIIA-NNSDIKSVQGIQ 60

Query: 96  SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP---FDGLYSLTY 152
            L  ++ L    L G+ + ++ + ++ L+ L  L L     L+SL  P   FD L +L  
Sbjct: 61  YLPNVRYLA---LGGNKLHDISA-LKELTNLTYLILTG-NQLQSL--PNGVFDKLTNLKE 113

Query: 153 LYLTDCAITELPESL-GLLSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERLQSL 210
           L L +  +  LP+ +   L++L  L L  N  + +P+ +  +L+ L+ L +    +LQSL
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSL 172

Query: 211 PK 212
           P+
Sbjct: 173 PE 174

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 47/192 (24%)

Query: 41  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSIG--CLSRLLELNLGDCKNLKTLPS 95
           CS  KL  +PE I       ++ L+      L ++     L +L ++N  + K +  +  
Sbjct: 18  CSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE 74

Query: 96  -SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLY 154
            +      + EI LT + +E +   +                       F GL SL  L 
Sbjct: 75  GAFEGASGVNEILLTSNRLENVQHKM-----------------------FKGLESLKTLM 111

Query: 155 LTDCAITELPE-SLGLLSSLEELYLERNNFERIPESI-IRLSKLSSL-LVS---YCERLQ 208
           L    IT +   S   LSS+  L L  N    +       L  LS+L L++    C    
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN--- 168

Query: 209 SLPKLPCNLYWL 220
                 C L WL
Sbjct: 169 ------CYLAWL 174

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 74/422 (17%), Positives = 133/422 (31%), Gaps = 121/422 (28%)

Query: 17  IFTKTPNP------SLIQHLNKL-----VILN-LSGCSKLKSLPEISSAGNIEKILLDGT 64
           +F K           L Q L +L     V+++ + G  K   +     A ++    L   
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWV-----ALDV---CLSYK 175

Query: 65  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKL--KSLEEICLTGSAIEELPSPIEC 122
              ++   I        LNL +C + +T+   L KL  +              +   I  
Sbjct: 176 VQCKMDFKI------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 123 LS--------------ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT-DCAITE-LPES 166
           +                L VL   + ++ K+    F+   S   L  T    +T+ L  +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLL--NVQNAKAWN-AFNL--SCKILLTTRFKQVTDFLSAA 284

Query: 167 LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE-RLQSLPKLPCNLYWLDAQHC 225
                SL+             E         SLL+ Y + R Q LP+             
Sbjct: 285 TTTHISLDH---HSMTLTP-DEVK-------SLLLKYLDCRPQDLPREVLTTNPR---RL 330

Query: 226 TTL-ESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYP 284
           + + ES+    +++     + + N     KL  I+E +L  ++        E R+   + 
Sbjct: 331 SIIAESIRDGLATWD---NWKHVNCD---KLTTIIESSLNVLEP------AEYRK--MFD 376

Query: 285 ALQGHVVLPGN-EIPM------WFSSQGMGSSITLKMQPGCFS------NNKVFGFVFCA 331
            L    V P +  IP       WF    +  S  + +              K        
Sbjct: 377 RL---SVFPPSAHIPTILLSLIWF---DVIKSDVMVVVNKLHKYSLVEKQPKES------ 424

Query: 332 IVAFRDHHVRDWSFKFYCEFKIKLKD-CDPH--VIQRYLGRVNYVEPDHLLLGY---YFF 385
                   +       Y E K+KL++    H  ++  Y     + + D L+  Y   YF+
Sbjct: 425 --TISIPSI-------YLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFY 474

Query: 386 NH 387
           +H
Sbjct: 475 SH 476

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 65/454 (14%), Positives = 141/454 (31%), Gaps = 138/454 (30%)

Query: 86  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD 145
           DCK+++ +P S+   + ++ I ++  A+         L +         K  + ++   +
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS---------KQEEMVQKFVE 84

Query: 146 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLE-RNNFERIPESI-------------I 191
            +  + Y +L     TE  +     S +  +Y+E R+      +               +
Sbjct: 85  EVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 192 R--LSKL----------------SSLLVSYCERLQSLPKLPCNLYWLDAQHCTT----LE 229
           R  L +L                + + +  C   +   K+   ++WL+ ++C +    LE
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 230 SLSGLFSSYKCVFFYLNENFK--------LDRKLRGIVEDA--------LQNI------- 266
            L  L       +   +++          +  +LR +++          L N+       
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 267 ------QLMATARWKEIREKISYPALQGHVVLPGNEIPMWFS---SQGMGSSITLKMQPG 317
                 +++ T R+K++ + +S  A   H+ L  +   M  +    + +     L  +P 
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLS-AATTTHISL--DHHSMTLTPDEVKSLLLKY-LDCRPQ 316

Query: 318 CFSN--NKVFGFVFCAIVAF-RDHHVRDWSFKFYCEFKIKLKDCDP--HVIQRYLGRVNY 372
                           I    RD     W    +     K  +CD    +I+  L   N 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLAT-W--DNW-----KHVNCDKLTTIIESSL---NV 365

Query: 373 VEPDHLLLGYYF----FNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGI 428
           +EP       +     F     +       +P         +L                 
Sbjct: 366 LEPA-EYRKMFDRLSVFP-PSAH-------IPT-------ILLSL--------------- 394

Query: 429 HLFHASDSMDSMEDPSKVFNRKEVEEPHPKRLKY 462
            ++      D M   +K+     VE+  PK    
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTI 426

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 44/298 (14%), Positives = 89/298 (29%), Gaps = 47/298 (15%)

Query: 15  CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIG 74
           C I   T    +   L+     ++S      +L        + K L      ++LP  + 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREV- 322

Query: 75  CLSRLLELNL-G----------------DCKNL-KTLPSSLCKLKSLE-EICLTGSAI-- 113
             +    L++                  +C  L   + SSL  L+  E        ++  
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 114 EELPSPIECLSAL--------CVLDLGDCKSLKSL--KLPFDGLYSLTYLYLTDCAITEL 163
                P   LS +         ++ +       SL  K P +   S+  +YL      +L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKV--KL 439

Query: 164 PESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY-------CERLQSLPKLPCN 216
                L  S+ + Y     F+        L +     + +        ER+     +  +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 217 LYWLDA---QHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMAT 271
             +L+       T   +   + ++ + + FY       D K   +V   L  +  +  
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 28/247 (11%)

Query: 15  CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP--EISSAGNIEKILLDGTAIEE--LP 70
            ++  K  +P +   L    ++           P  E  S   ++ + L  + IE   L 
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 111

Query: 71  SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEE--LPSPIECLSALC 127
             +   S+L  L+L   +    + ++L K  +L  + L+G S   E  L + +   S L 
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171

Query: 128 VLDLGDCKSLKS---LKLPFDGLYSLTYLYLTDC-------AITELPESLGLLSSLEELY 177
            L+L  C                 ++T L L+          ++ L        +L  L 
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR---CPNLVHLD 228

Query: 178 LERNNF--ERIPESIIRLSKLSSLLVSYCER-----LQSLPKLPCNLYWLDAQHCTTLES 230
           L  +        +   +L+ L  L +S C       L  L ++P  L  L         +
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGIVPDGT 287

Query: 231 LSGLFSS 237
           L  L  +
Sbjct: 288 LQLLKEA 294

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 29/176 (16%)

Query: 6   KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKL--KSLPEISSAG--NIEKILL 61
            L ++ ++ C+ F++    +L+   ++L  LNLS C     K +    +     I ++ L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202

Query: 62  DG-------TAIEELPSSIGCLSRLLELNLGDCKNL--KTLPSSLCKLKSLEEICLTG-- 110
            G       + +  L   +     L+ L+L D   L          +L  L+ + L+   
Sbjct: 203 SGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCY 258

Query: 111 ----SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY--LYLTDCAI 160
                 + EL      +  L  L +       +L+L  + L  L     + T  A 
Sbjct: 259 DIIPETLLELGE----IPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIAR 310

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 14/135 (10%)

Query: 86  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKL 142
           DC  K L  +P++L   +++ EI L  + I+ +P         L  +DL + + +  L  
Sbjct: 17  DCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISEL-- 71

Query: 143 P---FDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIPESII-RLSKLS 197
               F GL SL  L L    ITELP+SL   L SL+ L L  N    +       L  L+
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 198 SLLVSYCERLQSLPK 212
            L +    +LQ++ K
Sbjct: 132 LLSLYD-NKLQTIAK 145

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 11/144 (7%)

Query: 76  LSRLLELNLGDCKN-LKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC 134
            + + EL L +CK+    +     +  +LE + L    +  + S +  L  L  L+L + 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN 81

Query: 135 KSLKSLKLPFDGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPE---- 188
           +    L +  + L +LT+L L+   + ++     L  L  L+ L L       + +    
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141

Query: 189 SIIRLSKLSSL---LVSYCERLQS 209
               L +L+ L        E   S
Sbjct: 142 VFKLLPQLTYLDGYDREDQEAPDS 165

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 31/158 (19%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
            P+ ++ L     L+    +  K     +   N+E + L    +  + S++  L +L +L
Sbjct: 22  TPAAVRELV----LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKL 76

Query: 83  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 142
            L + +    L     KL +L  + L+G+ ++               D+   + LK L+ 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK---------------DISTLEPLKKLE- 120

Query: 143 PFDGLYSLTYLYLTDCAITELPE----SLGLLSSLEEL 176
                  L  L L +C +T L +       LL  L  L
Sbjct: 121 ------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 76  LSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC 134
            S + EL L + ++ +  L     + + LE +      +  + + +  L+ L  L+L D 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN 74

Query: 135 KSLKSLKLPFDGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPE 188
           +    L++  +   +LT+L L+   I +L     L  L +L+ L L       + +
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 113 IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSS 172
               PS ++ L    VLD       K   L  D    L +L   +  +T +  +L  L+ 
Sbjct: 12  RNRTPSDVKEL----VLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNK 65

Query: 173 LEELYLERNNFERIPESIIR-LSKLSSLLVSYC--------ERLQSLPKL 213
           L++L L  N      E +      L+ L +S          E L+ L  L
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 24/138 (17%)

Query: 28  QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDC 87
             + +LV L+ S  ++ K          +E +      +  + +++  L++L +L L D 
Sbjct: 17  SDVKELV-LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN 74

Query: 88  KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL 147
           +    L     K  +L  + L+G+ I+               DL   + LK L+      
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIK---------------DLSTIEPLKKLE------ 113

Query: 148 YSLTYLYLTDCAITELPE 165
            +L  L L +C +T L +
Sbjct: 114 -NLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 19  TKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIG-CLS 77
            +     L     +L  L+      L S+  +     ++K+ L    +      +     
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88

Query: 78  RLLELNLGDCK--NLKTLPSSLCKLKSLEEICLTGSAIEELP----SPIECLSALCVLD 130
            L  LNL   K  +L T+   L KL++L+ + L    +  L     +  + L  L  LD
Sbjct: 89  NLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 107 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITEL-P 164
           C    A++ L   +     L  L + + + L+ L+L    GL  L  L +    +  + P
Sbjct: 15  CTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 165 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP-KLPCNLYWL 220
           ++      L  L L  N  E +    ++   L  L       L   P    C L WL
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL------VLSGNPLHCSCALRWL 124

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 24/117 (20%)

Query: 68  ELPSSIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSAL 126
           +    +     L EL + + ++L+ L    L  L  L  + +  S +  +          
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--------- 72

Query: 127 CVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 183
                            F     L+ L L+  A+  L        SL+EL L  N  
Sbjct: 73  --------------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 95  SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLY 154
           +         E+ L G  I  + +    L     +D  D + ++ L   F  L  L  L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLL 70

Query: 155 LTDCAITELPESLG-LLSSLEELYLERNNFERIPESIIRLSKLSSL 199
           + +  I  + E L   L  L EL L  N+   +   +  L+ L SL
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 76  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK 135
             R  EL+L   K +  + +    L   + I  + + I +L      L  L  L + + +
Sbjct: 18  AVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75

Query: 136 SLKSLKLPFDGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPE 188
             +  +     L  LT L LT+ ++ EL +   L  L SL  L + RN       
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 35  ILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP 94
           ++ L+    ++   + ++A    ++ L G  I  + +    L +   ++  D + ++ L 
Sbjct: 1   MVKLT-AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL- 57

Query: 95  SSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCK--SLKSLKLPFDGLYSLT 151
                L+ L+ + +  + I  +   + + L  L  L L +     L  L  P   L SLT
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD-PLASLKSLT 116

Query: 152 YLYLTDCAITELPE 165
           YL +    +T    
Sbjct: 117 YLCILRNPVTNKKH 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 98  CKLKSLEEICLTGS--AIEELPSPIECLSALCVLDLGDCK--SLKSLKLPFDGLYSLTYL 153
                 E++ L G    IE++ + +  L A   L L       + SL     G+ +L  L
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL----SGMENLRIL 75

Query: 154 YLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC--------E 205
            L    I ++     +  +LEEL++  N    +   I +L  L  L +S          +
Sbjct: 76  SLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 206 RLQSLPKL 213
           +L +L KL
Sbjct: 135 KLAALDKL 142

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 21/172 (12%)

Query: 41  CS--KLKSLP-EISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSS 96
           C    L S+P  I +  + EK+ L  T +  L  +    L++L  LNL     L+TL + 
Sbjct: 21  CQGKSLDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAG 77

Query: 97  L-CKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKLP---FDGLYSLT 151
           +   L  L  + L  + +  LP  + + L+ L  L LG  + LKSL  P   FD L  L 
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSL--PSGVFDRLTKLK 134

Query: 152 YLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLSKLSSL 199
            L L    +  +P   G    L++L+ L L  N  + +P     RL KL ++
Sbjct: 135 ELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 129 LDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIP 187
           LDL            F GL  LT+L L    +  L   +   L+ L  L L  N    +P
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 188 ESI-IRLSKLSSLLVSYCERLQSLP 211
             +   L++L  L +    +L+SLP
Sbjct: 100 LGVFDHLTQLDKLYLGG-NQLKSLP 123

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 36/231 (15%), Positives = 77/231 (33%), Gaps = 25/231 (10%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKI-LLDGTAIEELPSSIGCLSRLLELN 83
           ++ ++   LV + +     L+ +    +A N+E+           +P     L    +L 
Sbjct: 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 84  LGDCKNL--KTLPSSLCKLKSLEEICLTGSAI--EELPSPIECLSALCVLDLGDCKSLKS 139
                 +    +P        + ++ L  + +  E+  + I+    L VL+  +    + 
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333

Query: 140 LKLPFDGLYSLTYLYLTDCA-ITELPESLGLLS------------SLEELYLERNN---- 182
           L++       L  L +   A    + +  GL+S             LE + +  ++    
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393

Query: 183 -FERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 232
             E I   +  L     +L+   ER+  LP    N        C  L   +
Sbjct: 394 SLESIGTYLKNLCDFRLVLLDREERITDLPL--DNGVRSLLIGCKKLRRFA 442

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 40/223 (17%), Positives = 70/223 (31%), Gaps = 27/223 (12%)

Query: 28  QHLNKLVILNLSGCSKL--KSLPEISSA-GNIEKILLDGT--------AIEELPSSIGCL 76
              + L  L L  CS      L  I +    I+ +L++ +         + EL      L
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194

Query: 77  SRLLELNLGDCKNL--KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSA---LCVLDL 131
             +L   + +   +  K L +     +SL  + +    I EL    +  +     C   L
Sbjct: 195 -EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSL 253

Query: 132 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF--ERIPES 189
            +   +    +       L  L L+     E+P      + + +L L       E     
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 190 IIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 232
           I +   L  L        + L  L        AQ+C  L+ L 
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVL--------AQYCKQLKRLR 348

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 41/221 (18%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPE----ISSAG---------NIEKILLDGT-----AI 66
            L Q+  +L  L +   +  + + +    +S  G          +E + +  +     ++
Sbjct: 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395

Query: 67  EELPSSIGCLSRLLELNLGDCKNLKTLP------SSLCKLKSLEEICL-------TGSAI 113
           E + + +  L     + L   + +  LP      S L   K L            T   +
Sbjct: 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455

Query: 114 EELPSPIECLSALCVLDLGDCK-SLKSLKLPFDGLYSLTYLYLTDCAITE--LPESLGLL 170
             +         +  + LG    S + L     G  +L  L +  C  +E  +  ++  L
Sbjct: 456 SYIGQ---YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512

Query: 171 SSLEELYLERNNFERIPESIIRLS----KLSSLLVSYCERL 207
            SL  L+++        + +++++     +  +       +
Sbjct: 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 30/239 (12%)

Query: 25  SLIQHLNKLVILNLSGCSKL-KSLPEISSAG--NIEKILLDG------TAIEELPSSIGC 75
            +  +L +L  ++          L  ++ A   ++E + LD         +  +     C
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI--VTHC 163

Query: 76  LSRLLELNLGDCKN-------LKTLPSSLCKLKSLEEICLTGSAI--EELPSPIECLSAL 126
             ++  L + +          L  L      L+ L       + I  ++L +      +L
Sbjct: 164 -RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222

Query: 127 CVLDLGDCK--SLKSLKLPFDGLYSLTYLYLTDC-AITELPESLGLLSSLEELYLERNNF 183
             + +GD +   L         L       L +   + E   +L     L  L L     
Sbjct: 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 184 ERIPESIIRLSKLSSLLVSYCER-----LQSLPKLPCNLYWLDAQHCTTLESLSGLFSS 237
             +P      +++  L + Y           + K P NL  L+ ++      L  L   
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP-NLEVLETRNVIGDRGLEVLAQY 340

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 43/236 (18%)

Query: 6   KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTA 65
              ++     +       P L     ++  L+L                           
Sbjct: 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE--------------------- 306

Query: 66  IEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECLS 124
            E+  + I     L  L   +    + L       K L+ + +   +  + +      +S
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 125 ALCVLDLGD-CKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 183
              ++ L   C+ L+ +        ++    +T+ ++  +   L  L     + L+R   
Sbjct: 367 QRGLIALAQGCQELEYM--------AVYVSDITNESLESIGTYLKNLCDFRLVLLDREE- 417

Query: 184 ERIPESIIRLSKLSSLLVSYCERLQSLPKLPCN-------LYWLDAQHCTTLESLS 232
                + + L      L+  C++L+               L ++  Q+   +  + 
Sbjct: 418 ---RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWML 469

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 29/229 (12%)

Query: 25  SLIQHLNKLVILNLSGCSKL--KSLPEISSAG-NIEKILLDGTAIEE-----LPSSIGCL 76
            + +      +L LS C       L  I++   N++++ L  + +++     L       
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183

Query: 77  SRLLELNLGDCKNLKT---LPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLG 132
           + L+ LN+    +  +   L   + +  +L+ + L  +  +E+L + ++    L  L  G
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243

Query: 133 DCKS------LKSLKLPFDGLYSLTYL-YLTDCAITELPESLGLLSSLEELYLERNNF-- 183
              +         L +   G   L  L    D     LP    + S L  L L       
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 184 ERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 232
             + + + +  KL  L V        L  L        A  C  L  L 
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVL--------ASTCKDLRELR 344

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 39/228 (17%), Positives = 66/228 (28%), Gaps = 28/228 (12%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
             ++I+   K+  + L G              N+      G     + +     + L E+
Sbjct: 58  PATVIRRFPKVRSVELKGKPHFADF-------NLVPDGWGGYVYPWIEAMSSSYTWLEEI 110

Query: 83  NLGDCK----NLKTLPSSLCKLKSLE---EICLTGSAIEELPSPIECLSALCVLDLGDCK 135
            L         L+ +  S    K L        +   +  +         L  LDL +  
Sbjct: 111 RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESD 167

Query: 136 ----SLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLS----SLEELYLERN-NFERI 186
               S   L    D   SL  L ++  A      +L  L     +L+ L L R    E++
Sbjct: 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227

Query: 187 PESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL 234
              + R  +L  L                +   +    C  L  LSG 
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVY--SGLSVALSGCKELRCLSGF 273

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 45/225 (20%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
           ++      L  + L                      +    +E +            L L
Sbjct: 99  AMSSSYTWLEEIRLKRMV------------------VTDDCLELIAK---SFKNFKVLVL 137

Query: 85  GDCKNL--KTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALC----VLDLGDCKSL 137
             C+      L +     ++L+E+ L  S ++++    +            L++    S 
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197

Query: 138 ---KSLKLPFDGLYSLTYLYLTDCA-ITELPESLGLLSSLEELYLERNNFERIPESIIRL 193
               +L+       +L  L L     + +L   L     LEEL       E  P+     
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY--- 254

Query: 194 SKLSSLLVSYCERLQSLPKLPCNLYWLD------AQHCTTLESLS 232
               S L       + L  L      +          C+ L +L+
Sbjct: 255 ----SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 29/209 (13%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAG-NIEKILLDGTAIEELPS----------SI 73
            L+    KL  L +    +   L  ++S   ++ ++ +  +    +            S+
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367

Query: 74  GCLSRLLELNLGDCKN-----LKTLPSSLCKLKSLEEICLTGSAIEELPSPI-------- 120
                 LE  L  C+      L T+  +   +       +   A + L            
Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427

Query: 121 -ECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELY 177
            E    L  L L    + K  +        +  L +     ++  +   L    SL +L 
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487

Query: 178 LERNNF--ERIPESIIRLSKLSSLLVSYC 204
           +    F  + +  +  +L  + SL +S C
Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 23/228 (10%)

Query: 15  CNIFTKTPNPSLIQHLNKLVILNLSGCSK----LKSLPEISSAGNIEKI-LLDGTAIEEL 69
                    P++    ++L  LNLS  +     L  L  +     ++++ +LD      L
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL--LCQCPKLQRLWVLDYIEDAGL 330

Query: 70  PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 129
                    L EL +   +     P+     + L  + +    +E +      ++   ++
Sbjct: 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI 390

Query: 130 DLGD-CKSLKSLKLPFDGLYSLTYLY--LTDCAITELPESLGLLSSLEELYLERNNFERI 186
            +     ++   +L      +  YL     D     + E       L  L L     +++
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH---CKDLRRLSLSGLLTDKV 447

Query: 187 PESIIRLSK-LSSLLVSYCE-RLQSLPKLPCNLYWLDAQHCTTLESLS 232
            E I   +K +  L V++       +  +           C +L  L 
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHV--------LSGCDSLRKLE 487

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 40/180 (22%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
            L+  L +  ++ L  C        ++ A             +++ S++     L ELNL
Sbjct: 22  ELLPLLQQCQVVRLDDCG-------LTEAR-----------CKDISSALRVNPALAELNL 63

Query: 85  GD-----------CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD 133
                         + L+T    + KL SL+  CLTG+    L S +  L  L  L L D
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKL-SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 134 CK-SLKSLKLPFDGL----YSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNF 183
                  L+L  +GL      L  L L  C+++      L   L      +EL +  N+ 
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 50/219 (22%), Positives = 78/219 (35%), Gaps = 41/219 (18%)

Query: 25  SLIQHLNKLVILNLSGCS-KLKSLPEISSAG-----NIEKILLDGTAI-----EELPSSI 73
           S ++ L  L  L+LS        L  +          +EK+ L+  ++     E L S +
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 74  GCLSRLLELNLGDC-------KNL-KTLPSSLCKLKSL--EEICLTGSAIEELPSPIECL 123
                  EL + +        + L + L  S C+L++L  E   +T     +L   +   
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226

Query: 124 SALCVLDLGDCK----SLKSL-KLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSL 173
           ++L  L LG  K     +  L          L  L++ +C IT      L   L    SL
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 174 EELYLERNNFERIPESIIRLS--------KLSSLLVSYC 204
           +EL L  N      E    L         +L SL V  C
Sbjct: 287 KELSLAGNELG--DEGARLLCETLLEPGCQLESLWVKSC 323

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 44/183 (24%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
            L+   ++L  L +  C        I++ G             +L   +     L EL+L
Sbjct: 250 GLLHPSSRLRTLWIWECG-------ITAKG-----------CGDLCRVLRAKESLKELSL 291

Query: 85  GD-------CKNL-KTLPSSLCKLKSL--EEICLTGSAIEELPSPIECLSALCVLDLGD- 133
                     + L +TL    C+L+SL  +    T +      S +     L  L + + 
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 134 ------CKSL-KSLKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERN 181
                  + L + L  P      L  L+L DC +++     L  +L    SL EL L  N
Sbjct: 352 RLEDAGVRELCQGLGQP---GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

Query: 182 NFE 184
              
Sbjct: 409 CLG 411

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 128 VLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERI 186
            LDL            FD L SLT LYL    +  LP  +   L+SL  L L  N  + +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 187 PESII-RLSKLSSLLVSYCERLQSLPK 212
           P  +  +L++L  L +    +LQSLP 
Sbjct: 92  PNGVFDKLTQLKELAL-NTNQLQSLPD 117

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 15/138 (10%)

Query: 70  PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCV 128
           P+ I   +  L+L     K+L        +L SL ++ L G+ ++ LP+ +   L++L  
Sbjct: 23  PTGIPAQTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80

Query: 129 LDLGDCKSLKSLKLP---FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNN 182
           L+L   + L+SL  P   FD L  L  L L    +  LP+  G+   L+ L++L L +N 
Sbjct: 81  LNLSTNQ-LQSL--PNGVFDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQ 135

Query: 183 FERIPESII-RLSKLSSL 199
            + +P+ +  RL+ L  +
Sbjct: 136 LKSVPDGVFDRLTSLQYI 153

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 81  ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKS 139
            L L D +  K  P     L +L+E+ L  + +  LP  + + L+ L VLDLG  + L  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTV 102

Query: 140 LKLP---FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII-RLSK 195
           L  P   FD L  L  L++    +TELP  +  L+ L  L L++N  + IP     RLS 
Sbjct: 103 L--PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 196 LSSL 199
           L+  
Sbjct: 161 LTHA 164

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 29/148 (19%)

Query: 86  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 143
            C  K LK LP  +   + + E+ L G+    +P  +     L ++DL + + + +L   
Sbjct: 16  RCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTL--S 70

Query: 144 ---FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLSKL 196
              F  +  L  L L+   +  +P        L SL  L L  N+   +PE     LS L
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPP--RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128

Query: 197 SSLLVS----YCERLQSLPKLPCNLYWL 220
           S L +     YC+         CN+ WL
Sbjct: 129 SHLAIGANPLYCD---------CNMQWL 147

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 86  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSP--IECLSALCVLDLGDCKSLKSLK 141
           DC  + LK +P  +       E+ L  + +  + S      L  L  L+L   + L  + 
Sbjct: 14  DCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGI- 69

Query: 142 LP---FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLS 194
                F+G   +  L L +  I E+     +   L  L+ L L  N    +       L+
Sbjct: 70  -EPNAFEGASHIQELQLGENKIKEISN--KMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 195 KLSSL 199
            L+SL
Sbjct: 127 SLTSL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 141 KLP---FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RL 193
            LP   FD L  LT L L+   I  LP+  G+   L+ L  LYL  N  + +P  +  +L
Sbjct: 42  SLPHGVFDKLTQLTKLSLSQNQIQSLPD--GVFDKLTKLTILYLHENKLQSLPNGVFDKL 99

Query: 194 SKLSSLLVSYCERLQSLPK 212
           ++L  L +    +L+S+P 
Sbjct: 100 TQLKELALDT-NQLKSVPD 117

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 34/214 (15%), Positives = 57/214 (26%), Gaps = 68/214 (31%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
             I     L I   S              G ++  + +   +  L  ++    +L  + L
Sbjct: 54  ENIASKKDLEIAEFSDIF----------TGRVKDEIPEA--LRLLLQALLKCPKLHTVRL 101

Query: 85  GDC----KNLKTLPSSLCKLKSLEEICLT------------GSAIEELP--SPIECLSAL 126
            D        + L   L K   LE + L               A++EL      +    L
Sbjct: 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161

Query: 127 CVLDLGD-----------------CKSLKSLKLPFDGLY----------------SLTYL 153
             +  G                   + L ++K+  +G+                  L  L
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 154 YLTDCAITE-----LPESLGLLSSLEELYLERNN 182
            L D   T      L  +L    +L EL L    
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 35/225 (15%), Positives = 62/225 (27%), Gaps = 68/225 (30%)

Query: 25  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84
           +++   + +  + LSG +       I +                L  +I     L     
Sbjct: 26  AVLLEDDSVKEIVLSGNT-------IGTEA-----------ARWLSENIASKKDLEIAEF 67

Query: 85  GDC----------KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC 134
            D           + L+ L  +L K   L  + L+ +A             L    L   
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-----TAQEPLIDF-LSKH 121

Query: 135 KSLKSLKLPFDGL------------------------YSLTYLYLTDCAITE-----LPE 165
             L+ L L  +GL                          L  +      +         +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 166 SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210
           +      L  + + +N     PE I  L  L   L +YC+ L+ L
Sbjct: 182 TFQSHRLLHTVKMVQNGIR--PEGIEHL--LLEGL-AYCQELKVL 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	463
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.39
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.36
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.25
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.82
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.81
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.19
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.97
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.93
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.92
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.84
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.87
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.07

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.7e-25  Score=220.66  Aligned_cols=206  Identities=27%  Similarity=0.408  Sum_probs=184.1

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .++++.|+|++ +.++.+  |..+.++++|++|+|++|. +..+|. ++.+++|++|++++|.++.+|..++.+++|++|
T Consensus        80 ~~~l~~L~L~~-n~l~~l--p~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRS-VPLPQF--PDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEES-SCCSSC--CSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccC-CCchhc--ChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence            47899999999 567788  7788899999999999964 558887 899999999999999999999999999999999


Q ss_pred             eeecCCCCCccchhcCC---------CCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEE
Q 012450           83 NLGDCKNLKTLPSSLCK---------LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYL  153 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~---------l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L  153 (463)
                      ++++|..++.+|..+..         +++|++|++++|.++.+|..++.+++|++|++++|. ++.+|..+..+++|+.|
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEE
Confidence            99999999999887654         999999999999999999999999999999999987 55677778999999999


Q ss_pred             EeeCCCCCC-cccccCCcccccccccccccc-cccchhhhCCCCccEeccccccccccCCCCC
Q 012450          154 YLTDCAITE-LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSYCERLQSLPKLP  214 (463)
Q Consensus       154 ~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~  214 (463)
                      ++++|.+.+ +|..++.+++|+.|+|++|++ ..+|..+.++++|+.|+|++|..++.+|...
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            999998776 888899999999999999876 5788889999999999999999988888643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=2.2e-24  Score=211.20  Aligned_cols=219  Identities=17%  Similarity=0.245  Sum_probs=158.8

Q ss_pred             CCcceeecccccCcC--CCCCcccccCCcCccEEeeec-CCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCc
Q 012450            5 GKLNQIIMAACNIFT--KTPNPSLIQHLNKLVILNLSG-CSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRL   79 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~--~~~~~~~~~~l~~L~~L~L~~-c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L   79 (463)
                      .+++.|+|+++..-.  .+  +..+.++++|++|++++ +.....+|. ++.+++|++|++++|.++ .+|..+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCccc--ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            578888888855444  56  67788888888888885 444456776 788888888888888887 677778888888


Q ss_pred             cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCccCCCCC-CccEEecCCCCCCCcCcccCCCCCCccEEEeeC
Q 012450           80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLS-ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD  157 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~  157 (463)
                      ++|++++|.....+|..+..+++|++|++++|.++ .+|..+..+. +|++|++++|.....+|..+..++ |+.|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            88888887665577878888888888888888887 7787787777 888888888765445666666665 77777777


Q ss_pred             CCCCC-cccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcc
Q 012450          158 CAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCT  226 (463)
Q Consensus       158 ~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~  226 (463)
                      |.+.+ .|..+..+++|+.|++++|.++..+..+..+++|+.|++++|.....+|..   .++|+.|+++++.
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            77664 556667777777777777777654445666777777777777544455532   2466677776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=5.8e-23  Score=202.51  Aligned_cols=198  Identities=27%  Similarity=0.419  Sum_probs=178.3

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeecc-CCCccCccccC----
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGT-AIEELPSSIGC----   75 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~-~i~~lp~~i~~----   75 (463)
                      .++++|++|+|++| .++.+  |..++.+++|++|+|++| .+..+|. ++.+++|++|++++| .+..+|..+..    
T Consensus       101 ~~l~~L~~L~L~~n-~l~~l--p~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A          101 FRLSHLQHMTIDAA-GLMEL--PDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             GGGTTCSEEEEESS-CCCCC--CSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             hhCCCCCEEECCCC-Cccch--hHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            45789999999995 56677  788999999999999996 5668887 999999999999996 45578877654    


Q ss_pred             -----CCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCc
Q 012450           76 -----LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL  150 (463)
Q Consensus        76 -----l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L  150 (463)
                           +++|++|++++| .++.+|..+.++++|++|++++|.++.+|..+..+++|++|++++|.....+|..+.++++|
T Consensus       177 ~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             CCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             hhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence                 999999999997 45689999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeeCCCCCC-cccccCCcccccccccccccc-cccchhhhCCCCccEeccccc
Q 012450          151 TYLYLTDCAITE-LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       151 ~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~c  204 (463)
                      +.|+|++|.+.+ +|..+..+++|++|+|++|++ ..+|..+.++++|+.+++..+
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            999999998776 898999999999999999886 589999999999999998865

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.7e-23  Score=203.46  Aligned_cols=226  Identities=18%  Similarity=0.245  Sum_probs=180.2

Q ss_pred             CCCCCcceeecccccCcC-CCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCC
Q 012450            2 QHHGKLNQIIMAACNIFT-KTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSR   78 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~-~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~   78 (463)
                      +++++|++|+|++++.+. .+  |..+.++++|++|++++|...+.+|. +..+++|++|++++|.++ .+|..+..+++
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             hCCCCCCeeeCCCCCcccccC--ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            467889999998644444 55  77888899999999998765557777 888899999999998888 67888888999


Q ss_pred             ccEEeeecCCCCCccchhcCCCC-CCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEee
Q 012450           79 LLELNLGDCKNLKTLPSSLCKLK-SLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT  156 (463)
Q Consensus        79 L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~  156 (463)
                      |++|++++|.....+|..+..++ +|+.|++++|.++ .+|..+..+. |++|++++|......|..+..+++|+.|+++
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            99999998765557888888887 8999999999887 6777787777 9999999887555677778888899999999


Q ss_pred             CCCCCCcccccCCccccccccccccccc-ccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccCcccccc
Q 012450          157 DCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCTTLES  230 (463)
Q Consensus       157 ~~~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~c~~L~~  230 (463)
                      +|.++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.....+|..  .++|+.+++.+.+.+..
T Consensus       230 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             CCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence            9988875555788889999999999887 78888888999999999998766677764  24566666666654443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=2.1e-22  Score=202.89  Aligned_cols=221  Identities=14%  Similarity=0.163  Sum_probs=160.0

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCcc-ccCCCCc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSS-IGCLSRL   79 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L   79 (463)
                      .+++|++|+|++| .++.++ +..+..+++|++|++++|. ++.++ . ++.+++|++|++++|.++.+|.. +..+++|
T Consensus        67 ~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           67 SFRQVELLNLNDL-QIEEID-TYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             HCCCCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccCcEEECCCC-cccccC-hhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence            4677888888874 355552 4567778888888888764 44444 3 67788888888888888877776 3778888


Q ss_pred             cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCC-----------------------------------
Q 012450           80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLS-----------------------------------  124 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~-----------------------------------  124 (463)
                      ++|++++|......|..+..+++|+.|++++|.++.++  +..++                                   
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~  221 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  221 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence            88888886544444556777888888888887776543  11222                                   


Q ss_pred             -----CccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccccchhhhCCCCccE
Q 012450          125 -----ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSS  198 (463)
Q Consensus       125 -----~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~  198 (463)
                           +|+.|++++|. ++..+ .+..+++|+.|++++|.+.+ .|..+..+++|++|++++|+++.+|..+..+++|+.
T Consensus       222 ~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~  299 (390)
T 3o6n_A          222 GPVNVELTILKLQHNN-LTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV  299 (390)
T ss_dssp             CCCCSSCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCE
T ss_pred             ccccccccEEECCCCC-CcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCE
Confidence                 34444444443 22232 36678899999999999988 477889999999999999999999888888999999


Q ss_pred             eccccccccccCCCC---CCCccEeeccCcccccccc
Q 012450          199 LLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       199 L~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~  232 (463)
                      |++++| .++.+|..   .++|+.|+++++. ++.++
T Consensus       300 L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~  334 (390)
T 3o6n_A          300 LDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK  334 (390)
T ss_dssp             EECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred             EECCCC-cceecCccccccCcCCEEECCCCc-cceeC
Confidence            999999 45566542   3689999998875 55554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=1.4e-22  Score=221.96  Aligned_cols=222  Identities=20%  Similarity=0.262  Sum_probs=123.8

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCcc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLL   80 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~   80 (463)
                      ++++|++|+|++|.....+  |..+..+++|+.|++++|...+.+|. +..+++|++|++++|.++ .+|..+..+++|+
T Consensus       416 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          416 NCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             GCTTCCEEECCSSEEESCC--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             cCCCCCEEECcCCcccCcc--cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            3445555555554333333  44555555555555555544444554 555556666666666555 4455555666666


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcc-----------------
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKL-----------------  142 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~-----------------  142 (463)
                      +|++++|.....+|..++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.....+|.                 
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~  573 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK  573 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence            6666665554455655666666666666666655 4555566666666666665543222221                 


Q ss_pred             -----------------------------------------------------cCCCCCCccEEEeeCCCCCC-cccccC
Q 012450          143 -----------------------------------------------------PFDGLYSLTYLYLTDCAITE-LPESLG  168 (463)
Q Consensus       143 -----------------------------------------------------~l~~l~~L~~L~L~~~~l~~-~p~~l~  168 (463)
                                                                           .+..+++|+.|+|++|++++ +|..++
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  653 (768)
T 3rgz_A          574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG  653 (768)
T ss_dssp             EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence                                                                 12234456666666666654 566666


Q ss_pred             Cccccccccccccccc-ccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcc
Q 012450          169 LLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCT  226 (463)
Q Consensus       169 ~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~  226 (463)
                      .+++|+.|+|++|+++ .+|..++++++|+.|+|++|...+.+|..   .++|+.|+++++.
T Consensus       654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            6666666666666665 56666666666666666666555555542   2345566665554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=3.3e-22  Score=212.88  Aligned_cols=221  Identities=14%  Similarity=0.157  Sum_probs=164.9

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRL   79 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L   79 (463)
                      ++++|++|+|++|. ++.++ +..+..+++|++|+|++|. +..+|.  ++.+++|++|+|++|.++.+|.. ++.+++|
T Consensus        73 ~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           73 SFRQVELLNLNDLQ-IEEID-TYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             HCCCCSEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCcEEECCCCC-CCCCC-hHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            46788888888854 55553 4578888888888888865 555554  68888888888888888888776 4788888


Q ss_pred             cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCC-----------------------------------
Q 012450           80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLS-----------------------------------  124 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~-----------------------------------  124 (463)
                      ++|++++|......|..+..+++|+.|++++|.++.++.  +.++                                   
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~  227 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  227 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence            888888876555556678888888888888888776541  2222                                   


Q ss_pred             -----CccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccccchhhhCCCCccE
Q 012450          125 -----ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSS  198 (463)
Q Consensus       125 -----~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~  198 (463)
                           +|+.|++++|. ++.. ..+..+++|+.|+|++|.+.+ .|..++.+++|+.|+|++|.++.+|..+..+++|+.
T Consensus       228 ~~~~~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~  305 (597)
T 3oja_B          228 GPVNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV  305 (597)
T ss_dssp             CSCCSCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCE
T ss_pred             cccCCCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcE
Confidence                 23444444433 2222 236778899999999999988 477889999999999999999999988888999999


Q ss_pred             eccccccccccCCCC---CCCccEeeccCcccccccc
Q 012450          199 LLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       199 L~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~  232 (463)
                      |+|++|. +..+|..   .++|+.|++++|. +..++
T Consensus       306 L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~  340 (597)
T 3oja_B          306 LDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK  340 (597)
T ss_dssp             EECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred             EECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC
Confidence            9999984 4466542   3689999998875 44443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=2.3e-22  Score=220.16  Aligned_cols=225  Identities=20%  Similarity=0.243  Sum_probs=196.3

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCc
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRL   79 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L   79 (463)
                      .++++|++|+|++|...+.+  |..+..+++|++|++++|...+.+|. +..+++|++|++++|.++ .+|..++.+++|
T Consensus       439 ~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          439 GSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            46789999999998766677  78899999999999999877778887 899999999999999998 789999999999


Q ss_pred             cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCc----------------------------------------
Q 012450           80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPS----------------------------------------  118 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~----------------------------------------  118 (463)
                      ++|++++|.....+|..++++++|+.|++++|.++ .+|.                                        
T Consensus       517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF  596 (768)
T ss_dssp             CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred             CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence            99999999877789999999999999999998775 4443                                        


Q ss_pred             ------------------------------cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-ccccc
Q 012450          119 ------------------------------PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESL  167 (463)
Q Consensus       119 ------------------------------~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l  167 (463)
                                                    .+..+++|+.|++++|.....+|..++++++|+.|+|++|.+++ +|..+
T Consensus       597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l  676 (768)
T 3rgz_A          597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV  676 (768)
T ss_dssp             TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence                                          34456789999999999777899999999999999999999995 99999


Q ss_pred             CCccccccccccccccc-ccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccCcccc
Q 012450          168 GLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCTTL  228 (463)
Q Consensus       168 ~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~c~~L  228 (463)
                      +.+++|+.|+|++|+++ .+|..+..+++|+.|++++|+..+.+|..  +.++......+++.|
T Consensus       677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L  740 (768)
T 3rgz_A          677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL  740 (768)
T ss_dssp             GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence            99999999999999997 79999999999999999999888888864  334444445555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=1.8e-21  Score=192.63  Aligned_cols=217  Identities=20%  Similarity=0.331  Sum_probs=168.8

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   81 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   81 (463)
                      +.+++|++|++++| .++++  +. +..+++|++|++++| .++.++.+..+++|++|++++|.++.++. +..+++|++
T Consensus        63 ~~~~~L~~L~l~~n-~i~~~--~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~  136 (347)
T 4fmz_A           63 EYLTNLEYLNLNGN-QITDI--SP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYS  136 (347)
T ss_dssp             GGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             hhcCCccEEEccCC-ccccc--hh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence            45778888888875 56666  33 778888888888886 56667778888888888888888887766 778888888


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT  161 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~  161 (463)
                      |++++|.....++. +..+++|+.|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus       137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             EECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             EECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCC
Confidence            88888876666554 7788888888888888887765 7788888899888876 555555 777888888888888888


Q ss_pred             CcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC--CCCCccEeeccCcccccccc
Q 012450          162 ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK--LPCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       162 ~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~--l~~~L~~L~i~~c~~L~~l~  232 (463)
                      +++. +..+++|++|++++|.++.++. +..+++|+.|++++| .++.++.  ..++|+.|++++| .++.++
T Consensus       213 ~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~  281 (347)
T 4fmz_A          213 DITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS  281 (347)
T ss_dssp             CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG
T ss_pred             CCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh
Confidence            8655 7788899999999999888876 888999999999988 4455543  2468899999887 455543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=1.1e-22  Score=218.14  Aligned_cols=206  Identities=17%  Similarity=0.215  Sum_probs=157.3

Q ss_pred             cccccCCcCccEEeeecCCCCCC------------------CCC-CC--CCCCccEEEeeccCCC-ccCccccCCCCccE
Q 012450           24 PSLIQHLNKLVILNLSGCSKLKS------------------LPE-IS--SAGNIEKILLDGTAIE-ELPSSIGCLSRLLE   81 (463)
Q Consensus        24 ~~~~~~l~~L~~L~L~~c~~l~~------------------lp~-l~--~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~   81 (463)
                      |..++++++|++|+|++|. +..                  +|. ++  .+++|++|++++|.+. .+|..++++++|++
T Consensus       199 p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            5678888888888888875 554                  777 77  8888888888888765 67888888888888


Q ss_pred             EeeecCCCCC--ccchhcCCC------CCCcEEEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCcccCCCCCCcc
Q 012450           82 LNLGDCKNLK--TLPSSLCKL------KSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT  151 (463)
Q Consensus        82 L~l~~c~~l~--~lp~~l~~l------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~  151 (463)
                      |++++|..+.  .+|..++.+      ++|++|++++|.++.+|.  .++.+++|++|++++|.....+| .+..+++|+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            8888876344  578777765      888888888888888888  78888888888888877444777 677888888


Q ss_pred             EEEeeCCCCCCcccccCCccc-ccccccccccccccchhhhCCC--CccEeccccccccccCCCCC----------CCcc
Q 012450          152 YLYLTDCAITELPESLGLLSS-LEELYLERNNFERIPESIIRLS--KLSSLLVSYCERLQSLPKLP----------CNLY  218 (463)
Q Consensus       152 ~L~L~~~~l~~~p~~l~~l~~-L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~c~~l~~l~~l~----------~~L~  218 (463)
                      .|++++|.+..+|..+..+++ |++|++++|.++.+|..+..++  +|+.|++++|.....+|...          ++|+
T Consensus       357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             EEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            888888888888888888888 8888888888888887666544  78888888876555444321          3677


Q ss_pred             EeeccCcccccccc
Q 012450          219 WLDAQHCTTLESLS  232 (463)
Q Consensus       219 ~L~i~~c~~L~~l~  232 (463)
                      .|+++++ .++.++
T Consensus       437 ~L~Ls~N-~l~~lp  449 (636)
T 4eco_A          437 SINLSNN-QISKFP  449 (636)
T ss_dssp             EEECCSS-CCCSCC
T ss_pred             EEECcCC-ccCcCC
Confidence            7777665 334444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=3.7e-21  Score=185.36  Aligned_cols=211  Identities=24%  Similarity=0.334  Sum_probs=167.4

Q ss_pred             ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCCccEEee
Q 012450            8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNL   84 (463)
Q Consensus         8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l   84 (463)
                      +.++.++ ..++.+  |..+  .++|+.|++++| .++.++.  +..+++|++|++++|.++.+ |..+..+++|++|++
T Consensus        14 ~~~~c~~-~~l~~i--p~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAV--PVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCS-SCCSSC--CTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCc-CCcccC--CcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            4677776 667777  4433  578999999985 5666664  88899999999999999877 667889999999999


Q ss_pred             ecCCCCCcc-chhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450           85 GDCKNLKTL-PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  162 (463)
Q Consensus        85 ~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~  162 (463)
                      ++|..++.+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|......+..+..+++|+.|++++|.+++
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            998756666 67788999999999999999877 5567889999999999987443333447889999999999999998


Q ss_pred             ccc-ccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC----CCCCccEeeccCc
Q 012450          163 LPE-SLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHC  225 (463)
Q Consensus       163 ~p~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c  225 (463)
                      +|. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++.    -.++|+.|+++++
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCC
Confidence            765 488899999999999999865 7788899999999999984 444442    2345666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=8.1e-22  Score=191.92  Aligned_cols=172  Identities=25%  Similarity=0.298  Sum_probs=78.8

Q ss_pred             cCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc---CccccCCCCccEEeeecCCCCCccchhcCCCCCCcE
Q 012450           31 NKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE  105 (463)
Q Consensus        31 ~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  105 (463)
                      ++|++|++++| .++.+|.  +..+++|++|++++|.++.+   +..+..+++|++|++++|. +..+|..+..+++|++
T Consensus        28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred             CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence            34555555543 2334443  34455555555555544432   2333344455555554432 2334444444555555


Q ss_pred             EEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC--cccccCCcccccccccccc
Q 012450          106 ICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERN  181 (463)
Q Consensus       106 L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~--~p~~l~~l~~L~~L~Ls~n  181 (463)
                      |++++|.++.++.  .+..+++|++|++++|......+..+.++++|+.|++++|.+.+  +|..+..+++|++|++++|
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            5555554444432  34444555555555444333333334444455555555554443  3444444455555555555


Q ss_pred             ccccc-chhhhCCCCccEeccccc
Q 012450          182 NFERI-PESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       182 ~l~~l-p~~l~~l~~L~~L~L~~c  204 (463)
                      .++.+ |..+..+++|+.|++++|
T Consensus       186 ~l~~~~~~~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          186 QLEQLSPTAFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CcCCcCHHHhcCCCCCCEEECCCC
Confidence            44433 334444445555555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=7.7e-21  Score=187.06  Aligned_cols=220  Identities=18%  Similarity=0.202  Sum_probs=171.6

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .++|++|+|++| .++.++ +..+.++++|++|++++|......|. ++.+++|++|++++|.++++|..+.  ++|++|
T Consensus        51 ~~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L  126 (330)
T 1xku_A           51 PPDTALLDLQNN-KITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQEL  126 (330)
T ss_dssp             CTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred             CCCCeEEECCCC-cCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEE
Confidence            368999999995 566663 45788999999999999754433365 8899999999999999999987764  789999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA  159 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~  159 (463)
                      ++++|......+..+.++++|+.|++++|.++   ..+..+..+++|++|++++|. ++.+|..+.  ++|+.|++++|.
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~  203 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNK  203 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSC
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCc
Confidence            99987655444566888999999999999886   345677888999999999876 556665443  788999999998


Q ss_pred             CCCc-ccccCCcccccccccccccccccch-hhhCCCCccEeccccccccccCCCC---CCCccEeeccCcccccccc
Q 012450          160 ITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       160 l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~  232 (463)
                      +.++ |..+..+++|+.|++++|.++.++. .+..+++|+.|++++| .++.+|..   .++|+.|+++++ .++.++
T Consensus       204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~  279 (330)
T 1xku_A          204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIG  279 (330)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccC
Confidence            8874 6778888899999999998876654 6788889999999988 45566642   367888888876 355544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=4.2e-21  Score=196.70  Aligned_cols=214  Identities=21%  Similarity=0.323  Sum_probs=175.9

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCc-cccCCCCccE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLE   81 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~   81 (463)
                      ++++.|+|++| .++.++ +..+.++++|++|+|++| .+..++.  +..+++|++|+|++|.++.++. .+..+++|++
T Consensus        64 ~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHEN-QIQIIK-VNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSC-CCCEEC-TTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred             CCCcEEEccCC-cCCeeC-HHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence            57999999995 566653 578899999999999996 4666653  8899999999999999998887 4889999999


Q ss_pred             EeeecCCCCCccc-hhcCCCCCCcEEEEEC-CCCccCCc-cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450           82 LNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        82 L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~  158 (463)
                      |++++|. +..++ ..+.++++|+.|++++ +.+..++. .+..+++|++|++++|. ++.+|. +..+++|+.|+|++|
T Consensus       141 L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGN  217 (440)
T ss_dssp             EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTS
T ss_pred             eeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCC
Confidence            9999975 45554 4688999999999998 56666665 58899999999999986 677775 889999999999999


Q ss_pred             CCCCc-ccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCCC-C---CCCccEeeccCc
Q 012450          159 AITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLYWLDAQHC  225 (463)
Q Consensus       159 ~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~-l---~~~L~~L~i~~c  225 (463)
                      .++++ |..+..+++|+.|+|++|+++.++ ..+.++++|+.|+|++| .++.++. .   .++|+.|+++++
T Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence            99985 778899999999999999998664 56888999999999998 4555543 1   245666666553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=5.8e-21  Score=188.19  Aligned_cols=210  Identities=20%  Similarity=0.277  Sum_probs=123.6

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      ++|++|+|++|. ++.++ +..+.++++|++|++++|. ++.+ |. ++.+++|++|++++|.++.+|..+.  ++|++|
T Consensus        54 ~~l~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQNND-ISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL  128 (332)
T ss_dssp             TTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred             CCCeEEECCCCc-CCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence            567888888743 55552 4567778888888888764 4444 44 7778888888888888777776654  678888


Q ss_pred             eeecCCCCCccc-hhcCCCCCCcEEEEECCCCcc---CCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450           83 NLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEE---LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        83 ~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~  158 (463)
                      ++++|.. ..+| ..+.++++|+.|++++|.++.   .+..+..+ +|++|++++|. ++.+|..+.  ++|+.|++++|
T Consensus       129 ~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n  203 (332)
T 2ft3_A          129 RIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHN  203 (332)
T ss_dssp             ECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSS
T ss_pred             ECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCC
Confidence            8877643 3443 446777778888877777752   34444444 66666666554 334443222  45555555555


Q ss_pred             CCCCcc-cccCCcccccccccccccccccch-hhhCCCCccEeccccccccccCCCC---CCCccEeeccCc
Q 012450          159 AITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC  225 (463)
Q Consensus       159 ~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c  225 (463)
                      .+.+++ ..+..+++|+.|++++|+++.++. .+..+++|+.|++++| .++.+|..   .++|+.|+++++
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence            555532 344555555555555555544432 4455555555555555 23344331   234555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=5.1e-21  Score=196.41  Aligned_cols=92  Identities=25%  Similarity=0.185  Sum_probs=73.5

Q ss_pred             cccCCCCCCccEEEeeCCCCCCc-ccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC---CCC
Q 012450          141 KLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK---LPC  215 (463)
Q Consensus       141 ~~~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~---l~~  215 (463)
                      |..+..+++|+.|++++|.+.++ |..+..+++|++|++++|.++.+ |..+..+++|+.|++++|..-...|.   -.+
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            44467789999999999999985 66888999999999999999876 56788999999999999964333343   236


Q ss_pred             CccEeeccCccccccccc
Q 012450          216 NLYWLDAQHCTTLESLSG  233 (463)
Q Consensus       216 ~L~~L~i~~c~~L~~l~~  233 (463)
                      +|++|+++++ .++.++.
T Consensus       372 ~L~~L~L~~N-~l~~~~~  388 (455)
T 3v47_A          372 NLKELALDTN-QLKSVPD  388 (455)
T ss_dssp             TCCEEECCSS-CCSCCCT
T ss_pred             cccEEECCCC-ccccCCH
Confidence            8999999886 4666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=1.5e-20  Score=185.01  Aligned_cols=218  Identities=23%  Similarity=0.372  Sum_probs=175.8

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCCccEE
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL   82 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L   82 (463)
                      +++.+++++ ..++.+  |..+.  ++|+.|++++| .++.++.  ++.+++|++|++++|.++.+ |..+..+++|++|
T Consensus        32 ~l~~l~~~~-~~l~~l--p~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSD-LGLEKV--PKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTT-SCCCSC--CCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecC-CCcccc--CccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            788999988 467777  55443  78999999996 5666664  88999999999999999977 7778999999999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCC--cCcccCCCCCCccEEEeeCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLK--SLKLPFDGLYSLTYLYLTDCA  159 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~--~l~~~l~~l~~L~~L~L~~~~  159 (463)
                      ++++|. ++.+|..+.  ++|++|++++|.++.++. .+..+++|+.|++++|....  ..+..+.++++|+.|++++|.
T Consensus       106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            999864 667877654  799999999999998765 47889999999999987532  445567889999999999999


Q ss_pred             CCCcccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC----CCCCccEeeccCcccccccccC
Q 012450          160 ITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCTTLESLSGL  234 (463)
Q Consensus       160 l~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c~~L~~l~~~  234 (463)
                      +..+|..+.  ++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++.    -.++|+.|+++++ .++.++..
T Consensus       183 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~  258 (330)
T 1xku_A          183 ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGG  258 (330)
T ss_dssp             CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTT
T ss_pred             cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCChh
Confidence            999887654  8999999999999866 5788899999999999985 333332    2368999999887 56677665


Q ss_pred             CC
Q 012450          235 FS  236 (463)
Q Consensus       235 ~~  236 (463)
                      +.
T Consensus       259 l~  260 (330)
T 1xku_A          259 LA  260 (330)
T ss_dssp             TT
T ss_pred             hc
Confidence            44

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=1.2e-20  Score=194.36  Aligned_cols=167  Identities=19%  Similarity=0.214  Sum_probs=103.2

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .+++|++|++++| .++.+  +  ++++++|++|++++| .++.+| ++.+++|++|++++|.++.++  ++.+++|++|
T Consensus        83 ~l~~L~~L~Ls~N-~l~~~--~--~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L  153 (457)
T 3bz5_A           83 QNTNLTYLACDSN-KLTNL--D--VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTEL  153 (457)
T ss_dssp             TCTTCSEEECCSS-CCSCC--C--CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEE
T ss_pred             cCCCCCEEECcCC-CCcee--e--cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEE
Confidence            3444444444442 23333  1  444555555555553 333333 455555555555555555543  4556666666


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  162 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~  162 (463)
                      ++++|..++.+  .+..+++|+.|++++|.++.+|  +..+++|+.|++++|. ++.++  +..+++|+.|++++|++++
T Consensus       154 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          154 DCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             ECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred             ECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCCcccc
Confidence            66665555544  3566777888888888777776  6777778888887765 44443  6677788888888888777


Q ss_pred             cccccCCcccccccccccccccccc
Q 012450          163 LPESLGLLSSLEELYLERNNFERIP  187 (463)
Q Consensus       163 ~p~~l~~l~~L~~L~Ls~n~l~~lp  187 (463)
                      +|  +..+++|+.|++++|+++.+|
T Consensus       227 ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          227 ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             cC--ccccCCCCEEEeeCCcCCCcC
Confidence            76  677777888888877776554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=1.7e-20  Score=194.02  Aligned_cols=227  Identities=22%  Similarity=0.250  Sum_probs=141.0

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCC
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSR   78 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~   78 (463)
                      .++++|++|+|++| .++.+. +..+.++++|++|+|++| .++.+|.  +..+++|++|++++|.++.+ +..+..+++
T Consensus        53 ~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           53 ASFPHLEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCCEEECCCC-ccCEeC-hhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            56778888888875 344442 566777788888888775 4566664  66777777777777777654 334666666


Q ss_pred             ccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-------------------------cCCCCCCccEEecCC
Q 012450           79 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-------------------------PIECLSALCVLDLGD  133 (463)
Q Consensus        79 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-------------------------~i~~l~~L~~L~l~~  133 (463)
                      |++|++++|......+..+.++++|+.|++++|.++.++.                         .+..+++|+.|++++
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence            7777776654333334455556666666666665554443                         344455555555555


Q ss_pred             CCCCCcCcccCCCCCCccEEEeeCCCCCCcc-cccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCC
Q 012450          134 CKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLP  211 (463)
Q Consensus       134 c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~  211 (463)
                      |..+..++.......+|+.|++++|.++++| ..+..+++|+.|+|++|.++.++ ..+..+++|+.|++++|..-...|
T Consensus       210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred             CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence            5555555544444456777777777777665 35667777777777777776555 346677777777777774322222


Q ss_pred             C---CCCCccEeeccCcccccccc
Q 012450          212 K---LPCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       212 ~---l~~~L~~L~i~~c~~L~~l~  232 (463)
                      .   -.++|+.|+++++ .++.++
T Consensus       290 ~~~~~l~~L~~L~L~~N-~l~~~~  312 (477)
T 2id5_A          290 YAFRGLNYLRVLNVSGN-QLTTLE  312 (477)
T ss_dssp             TTBTTCTTCCEEECCSS-CCSCCC
T ss_pred             HHhcCcccCCEEECCCC-cCceeC
Confidence            2   1256788888776 444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=6e-21  Score=196.22  Aligned_cols=214  Identities=23%  Similarity=0.323  Sum_probs=177.8

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE   81 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~   81 (463)
                      ++|++|+|++| .++.+. +..+.++++|+.|+|++| .+..++ . +..+++|++|+|++|.++.+|.. +..+++|++
T Consensus        75 ~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMEN-NIQMIQ-ADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcCC-cCceEC-HHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            57999999995 455553 678999999999999996 555555 3 88999999999999999988876 788999999


Q ss_pred             EeeecCCCCCccc-hhcCCCCCCcEEEEEC-CCCccCCc-cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450           82 LNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        82 L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~  158 (463)
                      |++++|. +..+| ..+.++++|+.|++++ +.+..++. .+..+++|++|++++|. ++.+|. +..+++|+.|+|++|
T Consensus       152 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGN  228 (452)
T ss_dssp             EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-CTTCTTCCEEECTTS
T ss_pred             EECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-ccccccccEEECcCC
Confidence            9999975 45555 4688999999999998 56777765 58899999999999986 666765 889999999999999


Q ss_pred             CCCCc-ccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC-C---CCCccEeeccCc
Q 012450          159 AITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLYWLDAQHC  225 (463)
Q Consensus       159 ~l~~~-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~-l---~~~L~~L~i~~c  225 (463)
                      .+.++ |..+..+++|+.|++++|+++.+ +..+..+++|+.|+|++| .++.++. .   .++|+.|++.++
T Consensus       229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence            99984 77899999999999999999866 567889999999999999 4555553 1   245666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=1.3e-20  Score=193.81  Aligned_cols=218  Identities=28%  Similarity=0.420  Sum_probs=180.6

Q ss_pred             cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccC-ccccCCCCccEEe
Q 012450            7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLELN   83 (463)
Q Consensus         7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~   83 (463)
                      ...++.++ ..++.+  |..+.  ++|+.|+|++| .++.+ |. +..+++|++|+|++|.++.++ ..+..+++|++|+
T Consensus        56 ~~~v~c~~-~~l~~i--P~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           56 FSKVVCTR-RGLSEV--PQGIP--SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SCEEECCS-SCCSSC--CSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CcEEEECC-CCcCcc--CCCCC--CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence            45677666 678888  55553  79999999996 45555 44 899999999999999999776 5688999999999


Q ss_pred             eecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCC
Q 012450           84 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAI  160 (463)
Q Consensus        84 l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l  160 (463)
                      +++|. +..+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|..++.++. .+.++++|+.|++++|.+
T Consensus       130 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          130 LFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            99975 55555 458889999999999999998876 678999999999999988888776 478899999999999999


Q ss_pred             CCcccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC---CCCCccEeeccCccccccccc
Q 012450          161 TELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSG  233 (463)
Q Consensus       161 ~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~i~~c~~L~~l~~  233 (463)
                      .++| .+..+++|+.|+|++|.++.+ |..+.++++|+.|++++|..-...+.   -.++|+.|+++++ .++.++.
T Consensus       209 ~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  283 (452)
T 3zyi_A          209 KDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH  283 (452)
T ss_dssp             SSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             cccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh
Confidence            9987 478999999999999999876 67899999999999999864332232   2368999999887 5666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=1.2e-21  Score=215.32  Aligned_cols=205  Identities=21%  Similarity=0.276  Sum_probs=168.9

Q ss_pred             cccccCCcCccEEeeecCCCCCC------------------CCC-CC--CCCCccEEEeeccCCC-ccCccccCCCCccE
Q 012450           24 PSLIQHLNKLVILNLSGCSKLKS------------------LPE-IS--SAGNIEKILLDGTAIE-ELPSSIGCLSRLLE   81 (463)
Q Consensus        24 ~~~~~~l~~L~~L~L~~c~~l~~------------------lp~-l~--~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~   81 (463)
                      |..++++++|+.|+|++|. +..                  +|. ++  .+++|++|+|++|.+. .+|..++++++|+.
T Consensus       441 P~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            6778899999999999975 444                  887 77  8999999999998755 78888999999999


Q ss_pred             EeeecCCCCC--ccchhcCCC-------CCCcEEEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCcccCCCCCCc
Q 012450           82 LNLGDCKNLK--TLPSSLCKL-------KSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFDGLYSL  150 (463)
Q Consensus        82 L~l~~c~~l~--~lp~~l~~l-------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L  150 (463)
                      |++++|..+.  .+|..++++       ++|+.|++++|.++.+|.  .++.+++|+.|++++|. ++.+| .+..+++|
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L  597 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKL  597 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcc
Confidence            9999986344  478766555       499999999999999998  89999999999999987 44888 68899999


Q ss_pred             cEEEeeCCCCCCcccccCCccc-ccccccccccccccchhhhCCCC--ccEeccccccccccCCCCC--------CCccE
Q 012450          151 TYLYLTDCAITELPESLGLLSS-LEELYLERNNFERIPESIIRLSK--LSSLLVSYCERLQSLPKLP--------CNLYW  219 (463)
Q Consensus       151 ~~L~L~~~~l~~~p~~l~~l~~-L~~L~Ls~n~l~~lp~~l~~l~~--L~~L~L~~c~~l~~l~~l~--------~~L~~  219 (463)
                      +.|+|++|.+..+|..+..+++ |+.|+|++|.++.+|..+..++.  |+.|++++|.....+|.++        ++|+.
T Consensus       598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            9999999999999988999998 99999999999988877766654  9999999987655555544        36788


Q ss_pred             eeccCcccccccc
Q 012450          220 LDAQHCTTLESLS  232 (463)
Q Consensus       220 L~i~~c~~L~~l~  232 (463)
                      |++++|. +..++
T Consensus       678 L~Ls~N~-L~~lp  689 (876)
T 4ecn_A          678 VTLSYNE-IQKFP  689 (876)
T ss_dssp             EECCSSC-CCSCC
T ss_pred             EEccCCc-CCccC
Confidence            8887763 44444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=2.3e-20  Score=179.80  Aligned_cols=199  Identities=24%  Similarity=0.346  Sum_probs=155.9

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccC-CCcc-CccccCCCCc
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTA-IEEL-PSSIGCLSRL   79 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~-i~~l-p~~i~~l~~L   79 (463)
                      .++|++|+|+++ .++.++ +..+..+++|++|++++| .++.+ |. +..+++|++|++++|. ++.+ +..+..+++|
T Consensus        31 ~~~l~~L~l~~n-~i~~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  107 (285)
T 1ozn_A           31 PAASQRIFLHGN-RISHVP-AASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (285)
T ss_dssp             CTTCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCC-cCCccC-HHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence            467888999884 456553 456788889999999886 44544 44 7888889999998886 7777 5567888889


Q ss_pred             cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeC
Q 012450           80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTD  157 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~  157 (463)
                      ++|++++|......|..+.++++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+.++++|+.|++++
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence            9999988765555567788888899999999888877654 7788889999998876 455554 477888899999999


Q ss_pred             CCCCCc-ccccCCcccccccccccccccccch-hhhCCCCccEeccccccc
Q 012450          158 CAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCER  206 (463)
Q Consensus       158 ~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~  206 (463)
                      |.+.++ |..+..+++|+.|++++|+++.++. .+..+++|+.|++++|+.
T Consensus       187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            888874 7778888889999999998887764 578888899999888853

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=2.2e-21  Score=208.00  Aligned_cols=226  Identities=18%  Similarity=0.185  Sum_probs=131.1

Q ss_pred             CCCcceeecccccCcCCCCCcc--cccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCC---
Q 012450            4 HGKLNQIIMAACNIFTKTPNPS--LIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSR---   78 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~--~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~---   78 (463)
                      +++|++|+|++| .++.+  |.  .++++++|+.|++++|...+.+|.++.+++|++|++++|.++.+|..+..+++   
T Consensus       304 l~~L~~L~L~~n-~l~~i--p~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~  380 (636)
T 4eco_A          304 GEKIQIIYIGYN-NLKTF--PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE  380 (636)
T ss_dssp             GGTCCEEECCSS-CCSSC--CCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCC
T ss_pred             CCCCCEEECCCC-cCCcc--CchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCc
Confidence            466666666664 34455  44  56666666666666654332555444444444455444444444444444444   


Q ss_pred             -----------------------ccEEeeecCCCCCccchhcC-------CCCCCcEEEEECCCCccCCccC-CCCCCcc
Q 012450           79 -----------------------LLELNLGDCKNLKTLPSSLC-------KLKSLEEICLTGSAIEELPSPI-ECLSALC  127 (463)
Q Consensus        79 -----------------------L~~L~l~~c~~l~~lp~~l~-------~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~  127 (463)
                                             |++|++++|......|..+.       .+++|+.|++++|.++.+|..+ ..+++|+
T Consensus       381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence                                   44444444444333444444       4455666666666666555543 2356666


Q ss_pred             EEecCCCCCCCcCcccCCC--------CCCccEEEeeCCCCCCcccccC--CcccccccccccccccccchhhhCCCCcc
Q 012450          128 VLDLGDCKSLKSLKLPFDG--------LYSLTYLYLTDCAITELPESLG--LLSSLEELYLERNNFERIPESIIRLSKLS  197 (463)
Q Consensus       128 ~L~l~~c~~l~~l~~~l~~--------l~~L~~L~L~~~~l~~~p~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~  197 (463)
                      +|++++|. ++.+|.....        +++|+.|+|++|.++.+|..+.  .+++|+.|+|++|+++.+|..+..+++|+
T Consensus       461 ~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~  539 (636)
T 4eco_A          461 SINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLK  539 (636)
T ss_dssp             EEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCC
T ss_pred             EEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCC
Confidence            66666655 3345443221        2277777777777777777766  77777777777777777777777777777


Q ss_pred             Eecccc------ccccccCCCC---CCCccEeeccCcccccccccC
Q 012450          198 SLLVSY------CERLQSLPKL---PCNLYWLDAQHCTTLESLSGL  234 (463)
Q Consensus       198 ~L~L~~------c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~  234 (463)
                      .|++++      |...+.+|..   .++|+.|++++|. ++.++..
T Consensus       540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~  584 (636)
T 4eco_A          540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK  584 (636)
T ss_dssp             EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC
T ss_pred             EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh
Confidence            777744      3334455532   3567777777764 3666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=2.3e-20  Score=192.92  Aligned_cols=217  Identities=18%  Similarity=0.203  Sum_probs=163.9

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccCcc-ccCCCCcc
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLL   80 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~   80 (463)
                      .++|+.|+|++| .++.++ +..+.++++|++|+|++| .+..+ |. +..+++|++|+|++|.++.+|.. +..+++|+
T Consensus        31 ~~~l~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  107 (477)
T 2id5_A           31 PTETRLLDLGKN-RIKTLN-QDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT  107 (477)
T ss_dssp             CTTCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred             CCCCcEEECCCC-ccceEC-HhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence            358999999995 566653 578999999999999997 45554 55 89999999999999999999875 68999999


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCC
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~  158 (463)
                      +|++++|......|..+..+++|+.|++++|.++.+ +..+..+++|++|++++|. ++.++ ..+..+++|+.|++++|
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESC
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCC
Confidence            999999876666677899999999999999999876 4578899999999999986 44444 33566667777777776


Q ss_pred             CCCCcc-cccCCcc------------------------cccccccccccccccc-hhhhCCCCccEeccccccccccCCC
Q 012450          159 AITELP-ESLGLLS------------------------SLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK  212 (463)
Q Consensus       159 ~l~~~p-~~l~~l~------------------------~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~  212 (463)
                      .+..++ ..+..++                        +|++|++++|+++.+| ..+..+++|+.|++++|. ++.++.
T Consensus       187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~  265 (477)
T 2id5_A          187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG  265 (477)
T ss_dssp             CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT
T ss_pred             cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh
Confidence            665532 2333343                        5566666666666666 356778888888888875 333332


Q ss_pred             ----CCCCccEeeccCc
Q 012450          213 ----LPCNLYWLDAQHC  225 (463)
Q Consensus       213 ----l~~~L~~L~i~~c  225 (463)
                          -.++|+.|++.++
T Consensus       266 ~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          266 SMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             TSCTTCTTCCEEECCSS
T ss_pred             hhccccccCCEEECCCC
Confidence                1356777777765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=1.2e-20  Score=207.27  Aligned_cols=226  Identities=19%  Similarity=0.234  Sum_probs=146.3

Q ss_pred             CCCCcceeecccccCcCCCCCcc--cccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCC-c
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPS--LIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSR-L   79 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~--~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L   79 (463)
                      .+++|++|+|++| .++.+  |.  .++++++|+.|+|++|. +..+|.++.+++|+.|++++|.++.+|..+..+++ |
T Consensus       546 ~l~~L~~L~Ls~N-~L~~i--p~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L  621 (876)
T 4ecn_A          546 TGPKIQIFYMGYN-NLEEF--PASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV  621 (876)
T ss_dssp             TTTTCCEEECCSS-CCCBC--CCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTC
T ss_pred             ccCCccEEEeeCC-cCCcc--CChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccC
Confidence            4567777777774 34466  55  67777777777777754 44667677777777777777777777776777776 7


Q ss_pred             cEEeeecCCCCCccchhcCCCC-------------------------------CCcEEEEECCCCccCCccCC-CCCCcc
Q 012450           80 LELNLGDCKNLKTLPSSLCKLK-------------------------------SLEEICLTGSAIEELPSPIE-CLSALC  127 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp~~l~~l~-------------------------------~L~~L~l~~~~i~~lp~~i~-~l~~L~  127 (463)
                      +.|++++|. +..+|..+..++                               +|+.|++++|.++.+|..+. .+++|+
T Consensus       622 ~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~  700 (876)
T 4ecn_A          622 EGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS  700 (876)
T ss_dssp             CEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred             CEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence            777777654 335554443332                               44455555555555554432 566677


Q ss_pred             EEecCCCCCCCcCcccCCC--------CCCccEEEeeCCCCCCcccccC--CcccccccccccccccccchhhhCCCCcc
Q 012450          128 VLDLGDCKSLKSLKLPFDG--------LYSLTYLYLTDCAITELPESLG--LLSSLEELYLERNNFERIPESIIRLSKLS  197 (463)
Q Consensus       128 ~L~l~~c~~l~~l~~~l~~--------l~~L~~L~L~~~~l~~~p~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~  197 (463)
                      .|++++|. +..+|..+..        +++|+.|+|++|+++.+|..+.  .+++|+.|+|++|+++.+|..+..+++|+
T Consensus       701 ~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~  779 (876)
T 4ecn_A          701 TIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLK  779 (876)
T ss_dssp             EEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCC
T ss_pred             EEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCC
Confidence            77777664 4455543322        2277888888887777777776  77888888888888877777777888888


Q ss_pred             Eecccc------ccccccCCCC---CCCccEeeccCcccccccccCC
Q 012450          198 SLLVSY------CERLQSLPKL---PCNLYWLDAQHCTTLESLSGLF  235 (463)
Q Consensus       198 ~L~L~~------c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~~  235 (463)
                      .|+|++      |.....+|..   .++|+.|++++|. +..+|..+
T Consensus       780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l  825 (876)
T 4ecn_A          780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL  825 (876)
T ss_dssp             EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC
T ss_pred             EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhh
Confidence            888766      3334455532   3567788887764 36666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=6.2e-21  Score=189.61  Aligned_cols=171  Identities=22%  Similarity=0.302  Sum_probs=79.0

Q ss_pred             CccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccC-ccccCCCCccEEeeecCCCCCccchh-cCCCCCCcEEE
Q 012450           32 KLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEIC  107 (463)
Q Consensus        32 ~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~  107 (463)
                      +|++|++++| .++.+|.  +..+++|++|++++|.++.++ ..+..+++|++|++++|. ++.+|.. +.++++|++|+
T Consensus        53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEE
T ss_pred             cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEE
Confidence            4555555543 2333333  444555555555555554442 234445555555555432 2333322 44455555555


Q ss_pred             EECCCCccCCc--cCCCCCCccEEecCCCCCCCcC-cccCCCCCCccEEEeeCCCCCC-cccccCCcccccccccccccc
Q 012450          108 LTGSAIEELPS--PIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       108 l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l  183 (463)
                      +++|.++.+|.  .+..+++|++|++++|..++.+ +..+.++++|+.|++++|.+.+ .|..+..+++|++|++++|.+
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            55555554443  3444555555555554333333 2234444555555555555444 244444555555555555554


Q ss_pred             cccchhh-hCCCCccEeccccc
Q 012450          184 ERIPESI-IRLSKLSSLLVSYC  204 (463)
Q Consensus       184 ~~lp~~l-~~l~~L~~L~L~~c  204 (463)
                      +.+|..+ ..+++|+.|++++|
T Consensus       211 ~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          211 ILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             TTHHHHHHHHTTTEEEEEEESC
T ss_pred             ccchhhhhhhcccccEEECCCC
Confidence            4444322 22445555555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=2.2e-20  Score=184.84  Aligned_cols=218  Identities=20%  Similarity=0.292  Sum_probs=174.2

Q ss_pred             CCCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450            1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLL   80 (463)
Q Consensus         1 l~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~   80 (463)
                      +.++++|++|++++| .++.+  +. +..+++|+.|++++|..+..++.+..+++|++|++++|.+..++. +..+++|+
T Consensus       106 ~~~l~~L~~L~l~~n-~i~~~--~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~  180 (347)
T 4fmz_A          106 LQNLTNLRELYLNED-NISDI--SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLY  180 (347)
T ss_dssp             GTTCTTCSEEECTTS-CCCCC--GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCS
T ss_pred             HcCCCcCCEEECcCC-cccCc--hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCC
Confidence            357899999999995 56666  33 889999999999999888888889999999999999999887776 78899999


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCC
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI  160 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l  160 (463)
                      .|++++|. +..++. +..+++|+.|++++|.++.++. +..+++|++|++++|. ++.++. +..+++|+.|++++|.+
T Consensus       181 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          181 SLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEEccCCc-cccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCcc
Confidence            99999874 555554 7788889999999988887765 7788889999998876 555555 77888889999988888


Q ss_pred             CCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC---CCCCccEeeccCccccccc
Q 012450          161 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHCTTLESL  231 (463)
Q Consensus       161 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~i~~c~~L~~l  231 (463)
                      .+++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|......+.   -.++|+.|++++|. ++.+
T Consensus       256 ~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~  326 (347)
T 4fmz_A          256 SDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI  326 (347)
T ss_dssp             CCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred             CCCh-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence            8874 5778888888888888888775 577888888888888854332222   23678888888875 4444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=1e-20  Score=194.10  Aligned_cols=131  Identities=19%  Similarity=0.230  Sum_probs=99.2

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCCccE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLE   81 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~   81 (463)
                      ++|++|+|++|. ++.+. +..+.++++|++|++++|.....++.  +..+++|++|++++|.++.+ |..++.+++|++
T Consensus        30 ~~l~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSC-CCEEC-TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CccCEEEecCCc-cCcCC-hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            578889998854 44442 56788888899999888766556544  78888888888888888865 666888888888


Q ss_pred             EeeecCCCCCccchh--cCCCCCCcEEEEECCCCccC-Ccc-CCCCCCccEEecCCCCCC
Q 012450           82 LNLGDCKNLKTLPSS--LCKLKSLEEICLTGSAIEEL-PSP-IECLSALCVLDLGDCKSL  137 (463)
Q Consensus        82 L~l~~c~~l~~lp~~--l~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~L~l~~c~~l  137 (463)
                      |++++|......|..  +..+++|++|++++|.++.+ |.. +..+++|++|++++|...
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            888887654444544  77888888888888888876 443 678888888888887643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=1.3e-20  Score=182.44  Aligned_cols=193  Identities=23%  Similarity=0.270  Sum_probs=87.8

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSSIGCLSRLL   80 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~   80 (463)
                      ++++++++++++ +.++.+  |..+.  ++|+.|++++|. ++.++ . +..+++|++|++++|.++.++.. +.+++|+
T Consensus         8 ~l~~l~~l~~~~-~~l~~i--p~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            8 KVASHLEVNCDK-RNLTAL--PPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG   80 (290)
T ss_dssp             CSTTCCEEECTT-SCCSSC--CSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred             ccCCccEEECCC-CCCCcC--CCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence            344555555554 344444  33322  345555555532 23222 1 44455555555555555544432 4445555


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCC-ccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCC
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~  158 (463)
                      +|++++| .+..+|..+..+++|+.|++++|.++.+| ..+..+++|++|++++|. ++.++ ..+..+++|+.|+|++|
T Consensus        81 ~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC
Confidence            5555543 23344444444555555555555555443 234444555555555443 22222 22344444555555555


Q ss_pred             CCCCcccc-cCCcccccccccccccccccchhhhCCCCccEeccccc
Q 012450          159 AITELPES-LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       159 ~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c  204 (463)
                      +++.+|.. +..+++|+.|+|++|+++.+|..+..+.+|+.|++++|
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence            54444432 23444555555555555444444444444444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.7e-21  Score=192.20  Aligned_cols=217  Identities=21%  Similarity=0.180  Sum_probs=165.6

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE   81 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~   81 (463)
                      ++|++|++++| .++.++ +..+.++++|+.|++++| .++.++ . ++.+++|++|++++|.++.++.. ++.+++|++
T Consensus        52 ~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYIS-NSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             ccCcEEECCCC-cCcccC-HHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            57889999884 466663 346888899999999886 455553 3 88888999999999988888876 788889999


Q ss_pred             EeeecCCCCCccch--hcCCCCCCcEEEEECC-CCccC-CccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeC
Q 012450           82 LNLGDCKNLKTLPS--SLCKLKSLEEICLTGS-AIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD  157 (463)
Q Consensus        82 L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~  157 (463)
                      |++++| .++.+|.  .+..+++|+.|++++| .++.+ +..+..+++|++|++++|......|..+..+++|+.|++++
T Consensus       129 L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          129 LNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             EECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            999886 4556665  6778889999999888 46666 45678888899999988875555567788888888888888


Q ss_pred             CCCCCccccc-CCcccccccccccccccc--------------------------------cchhhhCCCCccEeccccc
Q 012450          158 CAITELPESL-GLLSSLEELYLERNNFER--------------------------------IPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       158 ~~l~~~p~~l-~~l~~L~~L~Ls~n~l~~--------------------------------lp~~l~~l~~L~~L~L~~c  204 (463)
                      |.+..+|..+ ..+++|+.|++++|+++.                                +|..+..+++|+.|++++|
T Consensus       208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence            8887766543 347788888888887653                                5667889999999999998


Q ss_pred             cccccCCCC----CCCccEeeccCcc
Q 012450          205 ERLQSLPKL----PCNLYWLDAQHCT  226 (463)
Q Consensus       205 ~~l~~l~~l----~~~L~~L~i~~c~  226 (463)
                       .++.+|..    .++|+.|++++++
T Consensus       288 -~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          288 -QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -CCCccCHHHHhcCCCCCEEEeeCCC
Confidence             45566642    3567777777663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=2.5e-20  Score=174.84  Aligned_cols=206  Identities=24%  Similarity=0.313  Sum_probs=169.4

Q ss_pred             ccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccC-CCccCc-cccCCCCccEEeeecCCCC
Q 012450           15 CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA-IEELPS-SIGCLSRLLELNLGDCKNL   90 (463)
Q Consensus        15 c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~l~~c~~l   90 (463)
                      |..++++  |. +  .++|+.|++++| .++.+|.  +..+++|++|++++|. ++.++. .+..+++|++|++++|+.+
T Consensus        20 c~~l~~i--p~-~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l   93 (239)
T 2xwt_C           20 CKDIQRI--PS-L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL   93 (239)
T ss_dssp             ECSCSSC--CC-C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred             ccCcccc--CC-C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence            5668888  55 3  348999999995 5677765  8899999999999996 998876 5889999999999985667


Q ss_pred             Cccc-hhcCCCCCCcEEEEECCCCccCCccCCCCCCcc---EEecCCCCCCCcCcc-cCCCCCCcc-EEEeeCCCCCCcc
Q 012450           91 KTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALC---VLDLGDCKSLKSLKL-PFDGLYSLT-YLYLTDCAITELP  164 (463)
Q Consensus        91 ~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~l~~c~~l~~l~~-~l~~l~~L~-~L~L~~~~l~~~p  164 (463)
                      +.++ ..+.++++|+.|++++|.++.+|. +..+++|+   +|++++|..++.++. .+.++++|+ .|++++|.++.+|
T Consensus        94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~  172 (239)
T 2xwt_C           94 TYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ  172 (239)
T ss_dssp             CEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred             eEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence            7776 467899999999999999999987 88888888   999999955777665 478899999 9999999999988


Q ss_pred             cccCCccccccccccccc-ccccc-hhhhCC-CCccEeccccccccccCCC-CCCCccEeeccCcccc
Q 012450          165 ESLGLLSSLEELYLERNN-FERIP-ESIIRL-SKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTL  228 (463)
Q Consensus       165 ~~l~~l~~L~~L~Ls~n~-l~~lp-~~l~~l-~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~c~~L  228 (463)
                      ......++|++|++++|+ ++.+| ..+..+ ++|+.|++++| .++.+|. ..++++.|++.++..|
T Consensus       173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWTL  239 (239)
T ss_dssp             TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC---
T ss_pred             HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccCC
Confidence            766556899999999995 98886 457788 99999999997 4566665 4678888888877543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=2e-20  Score=195.51  Aligned_cols=97  Identities=20%  Similarity=0.218  Sum_probs=72.0

Q ss_pred             CCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccc---cchhhhCCCCccEeccccccccccCCC----CCCC
Q 012450          145 DGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFER---IPESIIRLSKLSSLLVSYCERLQSLPK----LPCN  216 (463)
Q Consensus       145 ~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~  216 (463)
                      ..+++|+.|++++|.+.+ +|..+..+++|++|++++|+++.   +|..+..+++|+.|++++|.....+|.    ..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            567889999999998887 77888899999999999998874   456788899999999999865443553    2467


Q ss_pred             ccEeeccCcccccccccCC-CCceeE
Q 012450          217 LYWLDAQHCTTLESLSGLF-SSYKCV  241 (463)
Q Consensus       217 L~~L~i~~c~~L~~l~~~~-~~~~~~  241 (463)
                      |+.|++++|.--..++... ..+..+
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~~~L~~L  426 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLPPRIKVL  426 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCCTTCCEE
T ss_pred             CCEEECcCCCCCcchhhhhcccCCEE
Confidence            8888888875434444333 244444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=8.6e-21  Score=201.88  Aligned_cols=223  Identities=20%  Similarity=0.179  Sum_probs=134.5

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCcc---CccccCCCCcc
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL---PSSIGCLSRLL   80 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~   80 (463)
                      +++|++|++++|.. +.+  | .+ .+++|+.|++++|..+..+ .+..+++|++|++++|.++.+   +..+..+++|+
T Consensus       306 ~~~L~~L~l~~n~l-~~l--p-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~  379 (606)
T 3vq2_A          306 HFKWQSLSIIRCQL-KQF--P-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR  379 (606)
T ss_dssp             TCCCSEEEEESCCC-SSC--C-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred             cccCCEEEcccccC-ccc--c-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence            34455555555333 444  2 22 4555555555554333322 244556666666666655543   55566666677


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~  158 (463)
                      +|++++|. +..+|..+..+++|+.|++++|.+..++.  .+..+++|++|++++|......|..+.++++|+.|++++|
T Consensus       380 ~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          380 HLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             EEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             EeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            77776654 44556666667777777777776665533  5666777777777777655555666667777777777777


Q ss_pred             CCCC--cccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcccccccc
Q 012450          159 AITE--LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       159 ~l~~--~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~  232 (463)
                      .+.+  +|..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|......|..   .++|+.|++++|. ++.++
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p  537 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSK  537 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEE
T ss_pred             cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccC
Confidence            7665  566677777777777777777644 455677777777777777433332321   2467777777763 55555


Q ss_pred             cC
Q 012450          233 GL  234 (463)
Q Consensus       233 ~~  234 (463)
                      ..
T Consensus       538 ~~  539 (606)
T 3vq2_A          538 GI  539 (606)
T ss_dssp             SC
T ss_pred             Hh
Confidence            43

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=4e-20  Score=189.41  Aligned_cols=217  Identities=28%  Similarity=0.426  Sum_probs=181.1

Q ss_pred             cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccC-ccccCCCCccEEe
Q 012450            7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLELN   83 (463)
Q Consensus         7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~   83 (463)
                      ...++.++ ..++.+  |..+.  ++++.|+|++| .++.++.  +..+++|++|+|++|.++.++ ..+..+++|++|+
T Consensus        45 ~~~v~c~~-~~l~~i--P~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           45 FSKVICVR-KNLREV--PDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             SCEEECCS-CCCSSC--CSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred             CCEEEeCC-CCcCcC--CCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence            45677776 678888  56554  78999999996 5666553  899999999999999999877 4588999999999


Q ss_pred             eecCCCCCccch-hcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCC
Q 012450           84 LGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAI  160 (463)
Q Consensus        84 l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l  160 (463)
                      +++|. ++.+|. .+..+++|++|++++|.++.++. .+..+++|++|++++|..+..++. .+.++++|+.|++++|.+
T Consensus       119 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          119 LFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             CCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            99974 556654 68899999999999999998876 688999999999999888888776 578899999999999999


Q ss_pred             CCcccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCC-C---CCCCccEeeccCccccccccc
Q 012450          161 TELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLP-K---LPCNLYWLDAQHCTTLESLSG  233 (463)
Q Consensus       161 ~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~-~---l~~~L~~L~i~~c~~L~~l~~  233 (463)
                      +++|. +..+++|+.|+|++|+++.+ |..+..+++|+.|++++|. ++.++ .   -.++|+.|+++++ .++.++.
T Consensus       198 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  272 (440)
T 3zyj_A          198 REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPH  272 (440)
T ss_dssp             SSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred             ccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccCh
Confidence            99984 78999999999999999876 6788999999999999985 33332 2   2468999999886 5665553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=3.7e-20  Score=182.38  Aligned_cols=217  Identities=21%  Similarity=0.333  Sum_probs=174.0

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCCccEE
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL   82 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L   82 (463)
                      +++.+++++ ..++.+  |..+  .++|+.|++++|. ++.++.  +..+++|++|++++|.++.+ |..++.+++|++|
T Consensus        34 ~l~~l~~~~-~~l~~i--p~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSD-LGLKAV--PKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCS-SCCSSC--CSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCC-CCcccc--CCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            689999998 467777  5554  3789999999964 555543  88999999999999999977 5678999999999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCC--CcCcccCCCCCCccEEEeeCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSL--KSLKLPFDGLYSLTYLYLTDCA  159 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l--~~l~~~l~~l~~L~~L~L~~~~  159 (463)
                      ++++| .+..+|..+.  ++|++|++++|.++.++.. +..+++|++|++++|..-  ...+..+..+ +|+.|++++|.
T Consensus       108 ~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          108 YISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             ECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             ECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            99986 4667887665  8999999999999988764 788999999999998742  2445556666 89999999999


Q ss_pred             CCCcccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCCC----CCCCccEeeccCcccccccccC
Q 012450          160 ITELPESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCTTLESLSGL  234 (463)
Q Consensus       160 l~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c~~L~~l~~~  234 (463)
                      ++++|..+.  ++|++|++++|.++.++ ..+..+++|+.|++++|. ++.++.    ..++|+.|+++++ .++.++..
T Consensus       184 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~  259 (332)
T 2ft3_A          184 LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPAG  259 (332)
T ss_dssp             CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred             CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeecChh
Confidence            999887654  79999999999998766 678899999999999984 444432    2468999999887 56677654


Q ss_pred             CC
Q 012450          235 FS  236 (463)
Q Consensus       235 ~~  236 (463)
                      +.
T Consensus       260 l~  261 (332)
T 2ft3_A          260 LP  261 (332)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=6.4e-21  Score=186.39  Aligned_cols=192  Identities=19%  Similarity=0.191  Sum_probs=104.3

Q ss_pred             CCcCccEEeeecCCCCCCCCC-C--CCCCCccEEEeeccCCCccCccccCC-----CCccEEeeecCCCCCccchhcCCC
Q 012450           29 HLNKLVILNLSGCSKLKSLPE-I--SSAGNIEKILLDGTAIEELPSSIGCL-----SRLLELNLGDCKNLKTLPSSLCKL  100 (463)
Q Consensus        29 ~l~~L~~L~L~~c~~l~~lp~-l--~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~l~~c~~l~~lp~~l~~l  100 (463)
                      ++++|++|++++|.....+|. +  ..+++|++|++++|.++.+|..++.+     ++|++|++++|......|..++++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            456666666666544445554 3  56666666666666666555555444     666666666654433333556666


Q ss_pred             CCCcEEEEECCCCcc---CCccC--CCCCCccEEecCCCCCCCcCc----ccCCCCCCccEEEeeCCCCCCcc--cccCC
Q 012450          101 KSLEEICLTGSAIEE---LPSPI--ECLSALCVLDLGDCKSLKSLK----LPFDGLYSLTYLYLTDCAITELP--ESLGL  169 (463)
Q Consensus       101 ~~L~~L~l~~~~i~~---lp~~i--~~l~~L~~L~l~~c~~l~~l~----~~l~~l~~L~~L~L~~~~l~~~p--~~l~~  169 (463)
                      ++|++|++++|.+..   ++..+  ..+++|++|++++|. ++.++    ..+.++++|+.|++++|.+.+.+  ..+..
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            666666666665432   23333  556666666666654 33221    11234556666666666666532  23444


Q ss_pred             cccccccccccccccccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccC
Q 012450          170 LSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQH  224 (463)
Q Consensus       170 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~  224 (463)
                      +++|++|++++|+++.+|..+.  ++|+.|++++| .++.+|.+  .++|+.|++++
T Consensus       252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKG  305 (312)
T ss_dssp             CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTT
T ss_pred             cCCCCEEECCCCccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccC
Confidence            5666666666666666665444  56666666665 33433331  13444555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3.1e-20  Score=181.28  Aligned_cols=187  Identities=21%  Similarity=0.322  Sum_probs=83.9

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   84 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l   84 (463)
                      ++|++|++++| .++++  + .+..+++|++|++++| .+..++.+..+++|++|++++|.++.++ .+..+++|++|++
T Consensus        41 ~~L~~L~l~~~-~i~~l--~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGT-GVTTI--E-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTS-CCCCC--T-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCC-CccCc--h-hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence            34444454442 23333  1 3444444555555443 3333333444444555555544444443 2444444555555


Q ss_pred             ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450           85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP  164 (463)
Q Consensus        85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p  164 (463)
                      ++|. +..++. +..+++|+.|++++|.++.++. +..+++|++|++++|. ++.++. +..+++|+.|++++|.+.+++
T Consensus       115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCcCh
Confidence            4432 233332 4444445555554444444433 4444444444444443 333333 444444444444444444443


Q ss_pred             cccCCcccccccccccccccccchhhhCCCCccEeccccc
Q 012450          165 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       165 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c  204 (463)
                      . +..+++|++|++++|+++.++ .+..+++|+.|++++|
T Consensus       190 ~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          190 P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEE
T ss_pred             h-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCC
Confidence            2 344444444444444444444 2444444444444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=2.9e-20  Score=180.85  Aligned_cols=219  Identities=22%  Similarity=0.273  Sum_probs=181.4

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC---CC-CCCCCCccEEEeeccCCCccCccccCCCCc
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL---PE-ISSAGNIEKILLDGTAIEELPSSIGCLSRL   79 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l---p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L   79 (463)
                      .++|++|+|++| .+++++ +..+.++++|++|++++| .++.+   +. +..+++|++|++++|.++.+|..+..+++|
T Consensus        27 ~~~l~~L~L~~n-~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L  103 (306)
T 2z66_A           27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL  103 (306)
T ss_dssp             CTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred             CCCCCEEECCCC-ccCccC-HhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence            358999999995 577773 345789999999999996 45444   33 567899999999999999999999999999


Q ss_pred             cEEeeecCCCCCccc--hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCC-cCcccCCCCCCccEEEe
Q 012450           80 LELNLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLK-SLKLPFDGLYSLTYLYL  155 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~L  155 (463)
                      ++|++++|. +..++  ..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.... .+|..+..+++|+.|++
T Consensus       104 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          104 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             CEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence            999999975 44444  4688999999999999999855 5568899999999999987444 46777899999999999


Q ss_pred             eCCCCCCc-ccccCCcccccccccccccccccch-hhhCCCCccEeccccccccccCC----CCCCCccEeeccCcc
Q 012450          156 TDCAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLP----KLPCNLYWLDAQHCT  226 (463)
Q Consensus       156 ~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~----~l~~~L~~L~i~~c~  226 (463)
                      ++|.+.++ |..+..+++|++|++++|.++.++. .+..+++|+.|++++|......+    .+|++|++|++++++
T Consensus       183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            99999985 7788999999999999999987764 67889999999999996544333    345678888887753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=4.8e-20  Score=185.65  Aligned_cols=222  Identities=21%  Similarity=0.285  Sum_probs=174.8

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCc-cccCCCCcc
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLL   80 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~   80 (463)
                      +++++.|++++ +.++.++ +..+..+++|++|++++|. +..++.  +..+++|++|++++|.++.++. .++.+++|+
T Consensus        44 l~~l~~l~l~~-~~l~~l~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKN-STMRKLP-AALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GCCCSEEEEES-CEESEEC-THHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCceEEEecC-CchhhCC-hhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            58899999998 4678884 3457889999999999974 566554  8999999999999999998765 479999999


Q ss_pred             EEeeecCCCCCccchh-cCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cC-------------
Q 012450           81 ELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PF-------------  144 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l-------------  144 (463)
                      +|++++| .+..+|.. +.++++|++|++++|.++.++. .+..+++|++|++++|.. +.++. .+             
T Consensus       121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCC
T ss_pred             EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccccccccccceeecccccc
Confidence            9999997 46677765 5899999999999999998754 588999999999999863 32221 01             


Q ss_pred             ------------------------CCCCCccEEEeeCCCCCCcccccCCccccccccccccccccc-chhhhCCCCccEe
Q 012450          145 ------------------------DGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSL  199 (463)
Q Consensus       145 ------------------------~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L  199 (463)
                                              ...++|+.|++++|.+++. ..+..+++|++|++++|.++.+ |..+..+++|+.|
T Consensus       199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence                                    0123466666666666665 3578899999999999999865 6789999999999


Q ss_pred             ccccccccccCCC---CCCCccEeeccCccccccccc
Q 012450          200 LVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSG  233 (463)
Q Consensus       200 ~L~~c~~l~~l~~---l~~~L~~L~i~~c~~L~~l~~  233 (463)
                      ++++|. ++.+|.   -.++|+.|++++| .++.++.
T Consensus       278 ~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  312 (390)
T 3o6n_A          278 YISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER  312 (390)
T ss_dssp             ECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred             ECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCc
Confidence            999984 455554   2478999999987 4555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=6.9e-20  Score=194.89  Aligned_cols=196  Identities=24%  Similarity=0.345  Sum_probs=92.0

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCcc-CccccCCCCccEEe
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELN   83 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~   83 (463)
                      +|++|++++| .++.++ +..++.+++|++|++++| .++.+|. +..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus       255 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKH-YFFNIS-SNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS  331 (606)
T ss_dssp             EEEEEECTTC-CCSSCC-TTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred             ceeEEEeecC-ccCccC-HHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence            4555555553 333332 333555555555555553 3445554 55555555555555555543 23345555555555


Q ss_pred             eecCCCCCccchh-cCCCCCCcEEEEECCCCccC---CccCCCCCCccEEecCCCCCCCcCccc----------------
Q 012450           84 LGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEEL---PSPIECLSALCVLDLGDCKSLKSLKLP----------------  143 (463)
Q Consensus        84 l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~l~~~----------------  143 (463)
                      +++|.....+|.. +..+++|++|++++|.++.+   +..+..+++|++|++++|......+..                
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            5554433333322 44455555555555544433   333444444444444444322222333                


Q ss_pred             ---------CCCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccc--cc--hhhhCCCCccEeccccc
Q 012450          144 ---------FDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFER--IP--ESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       144 ---------l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~--lp--~~l~~l~~L~~L~L~~c  204 (463)
                               +..+++|+.|++++|.+.. .|..+..+++|++|++++|.++.  ++  ..+..+++|+.|++++|
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC  486 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence                     3444455555555554444 23344445555555555554432  11  23444555555555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.6e-19  Score=172.72  Aligned_cols=191  Identities=30%  Similarity=0.434  Sum_probs=105.9

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccEE
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLEL   82 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L   82 (463)
                      +++.+++++ +.++.+  |..+.  ++|+.|++++| .++.++.  +..+++|++|++++|.++.++.. +..+++|++|
T Consensus        17 ~~~~l~~~~-~~l~~i--p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           17 NKNSVDCSS-KKLTAI--PSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTEEECTT-SCCSSC--CSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCEEEccC-CCCCcc--CCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            345666665 445555  33332  45666666664 3444443  56666666666666666666554 3556666666


Q ss_pred             eeecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCC
Q 012450           83 NLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA  159 (463)
Q Consensus        83 ~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~  159 (463)
                      ++++|. +..+| ..+..+++|++|++++|.++.++. .+..+++|++|++++|. ++.++. .+..+++|+.|++++|.
T Consensus        91 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           91 WVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             ECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCc
Confidence            666653 33333 334556666666666666665543 24556666666666654 333332 24556666666666666


Q ss_pred             CCCccc-ccCCcccccccccccccccccch-hhhCCCCccEeccccc
Q 012450          160 ITELPE-SLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYC  204 (463)
Q Consensus       160 l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c  204 (463)
                      +..++. .+..+++|++|++++|+++.+|. .+..+++|+.|++++|
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            665443 34555666666666666655543 2445555555555555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=6.5e-20  Score=195.08  Aligned_cols=200  Identities=23%  Similarity=0.220  Sum_probs=147.6

Q ss_pred             cccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc---CccccCCCCccEEeeecCCCCCccchhcCCC
Q 012450           26 LIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKL  100 (463)
Q Consensus        26 ~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l  100 (463)
                      .+..+++|+.|++++|.....+|.  +..+++|++|++++|.++.+   +..+..+++|++|++++|......|..+..+
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  399 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC  399 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence            344444555555554433334443  66677777777777777654   4557778888888888776545556677888


Q ss_pred             CCCcEEEEECCCCccC-C-ccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC--c--ccccCCccccc
Q 012450          101 KSLEEICLTGSAIEEL-P-SPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE--L--PESLGLLSSLE  174 (463)
Q Consensus       101 ~~L~~L~l~~~~i~~l-p-~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~--~--p~~l~~l~~L~  174 (463)
                      ++|+.|++++|.++.. + ..+..+++|++|++++|......+..+.++++|+.|++++|.+.+  +  +..+..+++|+
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~  479 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE  479 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence            8888888888888754 2 347888999999999988666667778899999999999999876  2  25688999999


Q ss_pred             cccccccccccc-chhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcc
Q 012450          175 ELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCT  226 (463)
Q Consensus       175 ~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~  226 (463)
                      .|++++|+++.+ |..+..+++|+.|++++|......|..   .+.| .|+++++.
T Consensus       480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence            999999999866 578899999999999999654444432   2456 78888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=2.6e-20  Score=195.69  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=46.6

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCC-CCCC-CCCCCCccEEEeeccC-CCccC-ccccCCC
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK-SLPE-ISSAGNIEKILLDGTA-IEELP-SSIGCLS   77 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~-~lp~-l~~l~~L~~L~L~~~~-i~~lp-~~i~~l~   77 (463)
                      .++++|++|+|++| .++.++ +..++++++|++|++++|.... ..|. ++.+++|++|++++|. +..+| ..+..++
T Consensus        71 ~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           71 YSLGSLEHLDLSDN-HLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTCTTCCEEECTTS-CCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             cccccCCEEECCCC-ccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            45666666666663 344442 3346666666666666643221 2233 5566666666666654 44444 2355555


Q ss_pred             CccEEeeecCCC
Q 012450           78 RLLELNLGDCKN   89 (463)
Q Consensus        78 ~L~~L~l~~c~~   89 (463)
                      +|++|++++|..
T Consensus       149 ~L~~L~L~~n~l  160 (549)
T 2z81_A          149 SLNELEIKALSL  160 (549)
T ss_dssp             EEEEEEEEETTC
T ss_pred             ccCeeeccCCcc
Confidence            566666655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=3.1e-20  Score=178.07  Aligned_cols=204  Identities=22%  Similarity=0.210  Sum_probs=148.0

Q ss_pred             cCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCc-cccCCCCccEEeeecCCCCCc
Q 012450           16 NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKT   92 (463)
Q Consensus        16 ~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~   92 (463)
                      ..++++  |..+.  ++|++|++++| .++.++.  +..+++|++|++++|.++.++. .+..+++|++|++++|.....
T Consensus        17 ~~l~~i--p~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           17 LNFYKI--PDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             SCCSSC--CSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCcccc--CCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            345556  44443  57888888885 4555553  7788888888888888887765 578888888888888754444


Q ss_pred             cchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCC-cCcccCCCCCCccEEEeeCCCCCCcc-cccCC
Q 012450           93 LPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLK-SLKLPFDGLYSLTYLYLTDCAITELP-ESLGL  169 (463)
Q Consensus        93 lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~  169 (463)
                      .+..+.++++|++|++++|.++.++. .++.+++|++|++++|.... .+|..+.++++|+.|++++|.+++++ ..+..
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  171 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence            44668888888888888888887765 57888888888888877433 25677888888888888888888753 45566


Q ss_pred             ccccc----ccccccccccccchhhhCCCCccEeccccccccccCCC-C---CCCccEeeccCc
Q 012450          170 LSSLE----ELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLYWLDAQHC  225 (463)
Q Consensus       170 l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-l---~~~L~~L~i~~c  225 (463)
                      +++|+    .|++++|.++.++.......+|+.|++++|. ++.+|. .   .++|+.|++++.
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred             hhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence            66666    7888888888877666666688888888885 555543 1   245555655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=1.2e-19  Score=186.79  Aligned_cols=203  Identities=21%  Similarity=0.196  Sum_probs=150.8

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      ++++|++|++++| .++.+  + .+..+++|++|++++| .++.+| ++.+++|++|++++|.++.++  ++.+++|++|
T Consensus        40 ~l~~L~~L~Ls~n-~l~~~--~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           40 QLATLTSLDCHNS-SITDM--T-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             HHTTCCEEECCSS-CCCCC--T-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             HcCCCCEEEccCC-CcccC--h-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence            4688999999995 67777  4 6889999999999996 566676 888999999999999999886  7899999999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  162 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~  162 (463)
                      ++++|. +..+|  ++.+++|+.|++++|.++.++  ++.+++|++|++++|..++.++  +..+++|+.|++++|.+++
T Consensus       112 ~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          112 NCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             ECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce
Confidence            999974 55565  788999999999999998874  7788888888888887666663  5667777777777777777


Q ss_pred             cccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC-CCCCccEeeccCc
Q 012450          163 LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHC  225 (463)
Q Consensus       163 ~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~c  225 (463)
                      +|  +..+++|+.|++++|+++.++  +..+++|+.|++++|. ++.+|- -.++|+.|+++++
T Consensus       185 l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          185 LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSS
T ss_pred             ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCC
Confidence            65  556666666666666666553  5556666666666653 333431 1234555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=5.8e-20  Score=195.50  Aligned_cols=222  Identities=22%  Similarity=0.297  Sum_probs=173.7

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCcc
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLL   80 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~   80 (463)
                      +++++.|++++ +.++.++ +..+..+++|++|+|++|. +..++.  ++.+++|++|+|++|.++.++.. ++.+++|+
T Consensus        50 l~~l~~l~l~~-~~l~~lp-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           50 LNNQKIVTFKN-STMRKLP-AALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GCCCSEEEESS-CEESEEC-THHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeC-CCCCCcC-HHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            47889999998 4677774 4567889999999999975 555553  89999999999999999988765 69999999


Q ss_pred             EEeeecCCCCCccchh-cCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCC------------
Q 012450           81 ELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFD------------  145 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~------------  145 (463)
                      +|++++|. +..+|.. ++++++|+.|++++|.++.+++ .++.+++|++|++++|. ++.++. .+.            
T Consensus       127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCC
T ss_pred             EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCcc
Confidence            99999974 5667655 5899999999999999997755 68999999999999986 333321 010            


Q ss_pred             -------------------------CCCCccEEEeeCCCCCCcccccCCccccccccccccccccc-chhhhCCCCccEe
Q 012450          146 -------------------------GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSL  199 (463)
Q Consensus       146 -------------------------~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L  199 (463)
                                               ..++|+.|+|++|.+++. ..+..+++|+.|+|++|.++.+ |..+..+++|+.|
T Consensus       205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence                                     112455566666666553 4678899999999999999865 6789999999999


Q ss_pred             ccccccccccCCCC---CCCccEeeccCccccccccc
Q 012450          200 LVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSG  233 (463)
Q Consensus       200 ~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~  233 (463)
                      +|++|. +..+|..   .++|+.|++++| .+..++.
T Consensus       284 ~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~  318 (597)
T 3oja_B          284 YISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER  318 (597)
T ss_dssp             ECTTSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred             ECCCCC-CCCCCcccccCCCCcEEECCCC-CCCccCc
Confidence            999984 4555542   468999999987 3555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=1e-19  Score=192.21  Aligned_cols=82  Identities=21%  Similarity=0.185  Sum_probs=56.4

Q ss_pred             CCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccccc---hhhhCCCCccEeccccccccccCCC----CCCC
Q 012450          145 DGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIP---ESIIRLSKLSSLLVSYCERLQSLPK----LPCN  216 (463)
Q Consensus       145 ~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~  216 (463)
                      ..+++|+.|++++|.+.+ +|..+..+++|+.|++++|+++.++   ..+.++++|+.|++++|..-..+|.    ..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            556777888888887777 6677777888888888888776543   4567777888888887754433443    2356


Q ss_pred             ccEeeccCcc
Q 012450          217 LYWLDAQHCT  226 (463)
Q Consensus       217 L~~L~i~~c~  226 (463)
                      |+.|+++++.
T Consensus       430 L~~L~l~~n~  439 (562)
T 3a79_B          430 ILVLNLSSNM  439 (562)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCC
Confidence            6677776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=1.1e-20  Score=185.10  Aligned_cols=211  Identities=16%  Similarity=0.156  Sum_probs=163.2

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .+++|++|+|++| .++.++ +..+..+++|++|+|++|. +...+.+..+++|++|++++|.++.++.    .++|++|
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCC-HHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             cCCCCCEEECcCC-ccCcCC-HHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCccccccC----CCCcCEE
Confidence            4678999999995 555553 5678899999999999864 4445558889999999999998887663    4889999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcccC-CCCCCccEEEeeCCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPF-DGLYSLTYLYLTDCAI  160 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~L~~L~L~~~~l  160 (463)
                      ++++|. +..++.  ..+++|+.|++++|.++.++. .+..+++|++|++++|......+..+ ..+++|+.|++++|.+
T Consensus       105 ~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          105 HAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             ECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            999875 444443  347889999999999987754 67788999999999987444334434 4688999999999999


Q ss_pred             CCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCc
Q 012450          161 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC  225 (463)
Q Consensus       161 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c  225 (463)
                      ++++.. ..+++|++|++++|+++.+|..+..+++|+.|++++| .++.+|..   .++|+.|+++++
T Consensus       182 ~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          182 YDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred             cccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence            887644 3588999999999999988888889999999999998 45556542   245666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=2.2e-20  Score=198.81  Aligned_cols=218  Identities=17%  Similarity=0.156  Sum_probs=184.7

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC---CC-CCCCCCccEEEeeccCCCccCccccCCCC
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL---PE-ISSAGNIEKILLDGTAIEELPSSIGCLSR   78 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l---p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~   78 (463)
                      .+++|++|++++|..+...    .+..+++|+.|++++|. +..+   |. +..+++|++|++++|.++.+|..+..+++
T Consensus       326 ~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~  400 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE  400 (606)
T ss_dssp             CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTT
T ss_pred             CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCC
Confidence            5789999999998666554    46689999999999974 4433   44 78899999999999999999988999999


Q ss_pred             ccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCcc-CCccCCCCCCccEEecCCCCCCC-cCcccCCCCCCccEEEe
Q 012450           79 LLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLDLGDCKSLK-SLKLPFDGLYSLTYLYL  155 (463)
Q Consensus        79 L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~L  155 (463)
                      |+.|++++|......| ..+..+++|+.|++++|.++. .|..+..+++|++|++++|.... .+|..+..+++|+.|++
T Consensus       401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  480 (606)
T 3vq2_A          401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL  480 (606)
T ss_dssp             CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence            9999999987665555 578899999999999999986 56778999999999999987554 36777899999999999


Q ss_pred             eCCCCCC-cccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC----CCCCccEeeccCcc
Q 012450          156 TDCAITE-LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCT  226 (463)
Q Consensus       156 ~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c~  226 (463)
                      ++|.+++ .|..+..+++|++|++++|+++.+ |..+..+++|+.|++++|. ++.+|.    +|.+|+.|++++++
T Consensus       481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred             CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence            9999998 467789999999999999999865 7889999999999999995 666664    44568888887764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=1e-19  Score=170.74  Aligned_cols=195  Identities=16%  Similarity=0.197  Sum_probs=165.6

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeec-cCCCccCc-cccCCCCcc
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG-TAIEELPS-SIGCLSRLL   80 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~   80 (463)
                      ++|++|++++ +.++.++ +..+.++++|++|++++|..++.++.  +..+++|++|++++ |.++.++. .+..+++|+
T Consensus        31 ~~l~~L~l~~-n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIE-THLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEES-CCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CcccEEEEeC-CcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            4799999999 5577774 45788999999999999866888875  78999999999999 99998875 578999999


Q ss_pred             EEeeecCCCCCccchhcCCCCCCc---EEEEECC-CCccCCcc-CCCCCCcc-EEecCCCCCCCcCcccCCCCCCccEEE
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLE---EICLTGS-AIEELPSP-IECLSALC-VLDLGDCKSLKSLKLPFDGLYSLTYLY  154 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~L~l~~c~~l~~l~~~l~~l~~L~~L~  154 (463)
                      +|++++|. ++.+|. +..+++|+   .|++++| .++.+|.. +..+++|+ .|++++|. ++.+|......++|+.|+
T Consensus       109 ~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~  185 (239)
T 2xwt_C          109 FLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVY  185 (239)
T ss_dssp             EEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEE
T ss_pred             EEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEE
Confidence            99999975 566887 88888888   9999999 99988764 88999999 99999987 557776544458999999


Q ss_pred             eeCCC-CCCcc-cccCCc-ccccccccccccccccchhhhCCCCccEeccccccc
Q 012450          155 LTDCA-ITELP-ESLGLL-SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER  206 (463)
Q Consensus       155 L~~~~-l~~~p-~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~  206 (463)
                      +++|. ++.+| ..+..+ ++|+.|++++|+++.+|..  .+++|+.|+++++..
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence            99995 98875 457788 9999999999999999865  789999999998754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=1e-20  Score=184.90  Aligned_cols=221  Identities=20%  Similarity=0.250  Sum_probs=136.8

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCC-CCCCCC-CC-------CCCCccEEEeeccCCC-ccCccc
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSK-LKSLPE-IS-------SAGNIEKILLDGTAIE-ELPSSI   73 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~-l~~lp~-l~-------~l~~L~~L~L~~~~i~-~lp~~i   73 (463)
                      .++|++|+++++..  .+  |..+...  |+.|++++|.. -..+|. +.       .+++|++|++++|.++ .+|..+
T Consensus        42 ~~~L~~l~l~~n~l--~~--p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--AD--LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEECTTHHHHCCTT--CC--CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             CCCceeEeeccccc--cc--HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            34567777777443  44  4444433  66677766432 112333 22       4677777777777776 566654


Q ss_pred             --cCCCCccEEeeecCCCCCccchhcCCC-----CCCcEEEEECCCCccCC-ccCCCCCCccEEecCCCCCCCc--Cccc
Q 012450           74 --GCLSRLLELNLGDCKNLKTLPSSLCKL-----KSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKS--LKLP  143 (463)
Q Consensus        74 --~~l~~L~~L~l~~c~~l~~lp~~l~~l-----~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~--l~~~  143 (463)
                        ..+++|++|++++|. +..+|..+..+     ++|++|++++|.++.++ ..++.+++|++|++++|.....  ++..
T Consensus       116 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              677777777777754 33336555554     77777777777777665 5677777777777777764332  2222


Q ss_pred             C--CCCCCccEEEeeCCCCCCcc----cccCCcccccccccccccccccc--hhhhCCCCccEeccccccccccCCC-CC
Q 012450          144 F--DGLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCERLQSLPK-LP  214 (463)
Q Consensus       144 l--~~l~~L~~L~L~~~~l~~~p----~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~l~~-l~  214 (463)
                      +  ..+++|+.|++++|.+..++    ..+..+++|++|++++|+++..+  ..+..+++|+.|++++|. ++.+|. ++
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc
Confidence            2  66777777777777777432    22345677777777777776533  344556777777777774 445654 34


Q ss_pred             CCccEeeccCccccccccc
Q 012450          215 CNLYWLDAQHCTTLESLSG  233 (463)
Q Consensus       215 ~~L~~L~i~~c~~L~~l~~  233 (463)
                      ++|+.|+++++ .++.++.
T Consensus       274 ~~L~~L~Ls~N-~l~~~p~  291 (312)
T 1wwl_A          274 AKLSVLDLSYN-RLDRNPS  291 (312)
T ss_dssp             SEEEEEECCSS-CCCSCCC
T ss_pred             CCceEEECCCC-CCCCChh
Confidence            56777777665 4555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=3.3e-20  Score=177.71  Aligned_cols=203  Identities=23%  Similarity=0.287  Sum_probs=144.3

Q ss_pred             ccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCc
Q 012450           25 SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE  104 (463)
Q Consensus        25 ~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  104 (463)
                      .....+++|+.|++++| .++.++.+..+++|++|++++|.++.++ .+..+++|++|++++|......+..+.++++|+
T Consensus        35 ~~~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           35 VTQNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             ECHHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccccceeeeeeCCC-CcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            34556788888888875 5667777778888888888888887764 577888888888888754333344467788888


Q ss_pred             EEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCCCcccc-cCCcccccccccccc
Q 012450          105 EICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERN  181 (463)
Q Consensus       105 ~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~~-l~~l~~L~~L~Ls~n  181 (463)
                      +|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|++++|.+++++.. +..+++|+.|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            888888888877654 5778888888888875 444443 357788888888888888875543 577888888888888


Q ss_pred             cccccch-hhhCCCCccEeccccccccccCCCCCCCccEeeccCcccccccccC
Q 012450          182 NFERIPE-SIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL  234 (463)
Q Consensus       182 ~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~l~~~  234 (463)
                      +++.++. .+..+++|+.|++++|+....    ++.+++|++..+.--..++..
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBBCT
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCcccCc
Confidence            8876664 357788888888888854433    234566665554433344433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=1.8e-19  Score=172.62  Aligned_cols=204  Identities=22%  Similarity=0.276  Sum_probs=168.6

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE   81 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~   81 (463)
                      .+++|+.|++++| .++.+   ..+..+++|++|++++| .+..++.+..+++|++|++++|.++.++.. +..+++|++
T Consensus        39 ~l~~L~~L~l~~~-~i~~~---~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNS-DIKSV---QGIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTS-CCCCC---TTGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCC-Ccccc---cccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            4578999999995 46665   46889999999999996 467777799999999999999999988765 689999999


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI  160 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l  160 (463)
                      |++++|......+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|......+..+..+++|+.|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            99999865444445578999999999999999988765 58999999999999974433344468899999999999999


Q ss_pred             CCccc-ccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCc
Q 012450          161 TELPE-SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNL  217 (463)
Q Consensus       161 ~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L  217 (463)
                      .+++. .+..+++|+.|++++|.+.      ..+++|+.|+++.|.....+|....++
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence            99654 4789999999999999875      346789999999987777777644333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1e-19  Score=177.63  Aligned_cols=191  Identities=23%  Similarity=0.368  Sum_probs=165.2

Q ss_pred             cccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcE
Q 012450           26 LIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE  105 (463)
Q Consensus        26 ~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  105 (463)
                      ....+++|+.|++++| .+..+|.+..+++|++|++++|.++.++. +..+++|++|++++|. +..++ .+..+++|+.
T Consensus        36 ~~~~l~~L~~L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~  111 (308)
T 1h6u_A           36 TQADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT  111 (308)
T ss_dssp             CHHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred             cHHHcCCcCEEEeeCC-CccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCE
Confidence            4557899999999996 67888889999999999999999999888 8999999999999975 66666 5889999999


Q ss_pred             EEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccc
Q 012450          106 ICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFER  185 (463)
Q Consensus       106 L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~  185 (463)
                      |++++|.++.++. +..+++|++|++++|. ++.++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|+++.
T Consensus       112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence            9999999999875 8999999999999986 566665 8899999999999999999876 8999999999999999998


Q ss_pred             cchhhhCCCCccEeccccccccccCCCC--CCCccEeeccCcc
Q 012450          186 IPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCT  226 (463)
Q Consensus       186 lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~c~  226 (463)
                      ++. +..+++|+.|++++|. ++.++.+  .++|+.|++++++
T Consensus       188 ~~~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          188 ISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred             Chh-hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCe
Confidence            885 8899999999999984 4444432  3567777776653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=3.4e-20  Score=192.45  Aligned_cols=212  Identities=16%  Similarity=0.136  Sum_probs=168.5

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .+++|++|+|++| .++.++ +..+..+++|++|+|++|. +...+.++.+++|++|+|++|.++.+|.    .++|++|
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCC-GGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             cCCCccEEEeeCC-cCCCCC-HHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence            4568999999995 556553 6789999999999999964 5444458899999999999999887764    3889999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCcccCC-CCCCccEEEeeCCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFD-GLYSLTYLYLTDCAI  160 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~l~-~l~~L~~L~L~~~~l  160 (463)
                      ++++|.. ..++.  ..+++|+.|++++|.++.+ |..++.+++|+.|++++|......|..+. .+++|+.|+|++|.+
T Consensus       105 ~L~~N~l-~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCC-CCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcC-CCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999754 44443  3578899999999999876 55778899999999999875554555554 789999999999999


Q ss_pred             CCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcc
Q 012450          161 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCT  226 (463)
Q Consensus       161 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~  226 (463)
                      +++|. ...+++|+.|+|++|.++.+|..+..+++|+.|++++|. +..+|..   .++|+.|++.+++
T Consensus       182 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          182 YDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             ccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence            98765 346899999999999999998889999999999999984 4455542   2466677776653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.81  E-value=3.9e-19  Score=183.39  Aligned_cols=190  Identities=19%  Similarity=0.299  Sum_probs=103.9

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .+++|++|+|++| .++.+  +. +.++++|++|++++| .+..++.++.+++|++|++++|.++.++. +..+++|++|
T Consensus        66 ~l~~L~~L~Ls~n-~l~~~--~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A           66 YLNNLTQINFSNN-QLTDI--TP-LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             GCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             hhcCCCEEECCCC-ccCCc--hh-hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence            4667777777764 45555  33 666666666666664 34444446666666666666666665544 5555666666


Q ss_pred             eeecCCCCCccc--------------------hhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcc
Q 012450           83 NLGDCKNLKTLP--------------------SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL  142 (463)
Q Consensus        83 ~l~~c~~l~~lp--------------------~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~  142 (463)
                      ++++|. +..++                    ..+.++++|+.|++++|.++.++ .+..+++|++|++++|.. ..++.
T Consensus       140 ~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~  216 (466)
T 1o6v_A          140 ELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI-SDITP  216 (466)
T ss_dssp             EEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG
T ss_pred             ECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc-ccccc
Confidence            655543 11111                    12556667777777777766654 356666677777766653 22222


Q ss_pred             cCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccc
Q 012450          143 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       143 ~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c  204 (463)
                       +..+++|+.|++++|.+.+++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus       217 -~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n  275 (466)
T 1o6v_A          217 -LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN  275 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred             -ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC
Confidence             444555555555555555442 24444555555555554444432 444444444444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.81  E-value=1.8e-19  Score=185.35  Aligned_cols=192  Identities=26%  Similarity=0.367  Sum_probs=118.7

Q ss_pred             cCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450           31 NKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG  110 (463)
Q Consensus        31 ~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  110 (463)
                      ++|+.|++++| .++.+|..  +++|++|++++|.++.++..   .++|++|++++|. ++.+| .++++++|++|++++
T Consensus        91 ~~L~~L~l~~n-~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           91 PHLESLVASCN-SLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDN  162 (454)
T ss_dssp             TTCSEEECCSS-CCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEEccCC-cCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCC
Confidence            34555555543 33334431  24555555555555544431   1567777777653 44566 467777777777777


Q ss_pred             CCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhh
Q 012450          111 SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI  190 (463)
Q Consensus       111 ~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l  190 (463)
                      |.++.+|..+   .+|++|++++|. ++.+| .+.++++|+.|++++|.+.++|...   ++|++|++++|.++.+| .+
T Consensus       163 N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~  233 (454)
T 1jl5_A          163 NSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-EL  233 (454)
T ss_dssp             SCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CC
T ss_pred             CcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-cc
Confidence            7777766543   467777777764 44566 3677777777777777777765432   47777777777777777 37


Q ss_pred             hCCCCccEeccccccccccCCCCCCCccEeeccCcccccccccCCCCceeE
Q 012450          191 IRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCV  241 (463)
Q Consensus       191 ~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~l~~~~~~~~~~  241 (463)
                      ..+++|+.|++++| .++.+|..+++|+.|+++++. ++.++.....+..+
T Consensus       234 ~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L  282 (454)
T 1jl5_A          234 QNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNY-LTDLPELPQSLTFL  282 (454)
T ss_dssp             TTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEE
T ss_pred             CCCCCCCEEECCCC-cCCcccccccccCEEECCCCc-ccccCcccCcCCEE
Confidence            77778888888776 455667667777777777653 44454443334333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=2.1e-18  Score=183.47  Aligned_cols=203  Identities=29%  Similarity=0.371  Sum_probs=116.1

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   84 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l   84 (463)
                      ++|++|+|++| .++.+  +.   .+++|++|+|++| .++.+|.  .+++|++|++++|.++.+|.   .+++|+.|++
T Consensus        61 ~~L~~L~L~~N-~l~~l--p~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSL--PA---LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSC-CCSCC--CC---CCTTCCEEEECSC-CCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCC-CCCCC--CC---cCCCCCEEEcCCC-cCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence            35555555553 34444  22   3455666666654 3445554  45566666666666665554   3455666666


Q ss_pred             ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCC-----------------CCccEEecCCCCCCCcCcccCCCC
Q 012450           85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECL-----------------SALCVLDLGDCKSLKSLKLPFDGL  147 (463)
Q Consensus        85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l-----------------~~L~~L~l~~c~~l~~l~~~l~~l  147 (463)
                      ++| .+..+|..   +++|++|++++|.++.+|..+..+                 ++|+.|++++|. ++.+|.   .+
T Consensus       129 ~~N-~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~~---~~  200 (622)
T 3g06_A          129 FGN-QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLPT---LP  200 (622)
T ss_dssp             CSS-CCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCC---CC
T ss_pred             CCC-CCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCCC---cc
Confidence            654 34445542   356666666666666555432211                 333444444333 222322   12


Q ss_pred             CCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCccc
Q 012450          148 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTT  227 (463)
Q Consensus       148 ~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~  227 (463)
                      ++|+.|++++|.++.+|.   .+++|+.|++++|.++.+|   ..+++|+.|++++| .++.+|..+++|+.|++++| .
T Consensus       201 ~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~  272 (622)
T 3g06_A          201 SELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-Q  272 (622)
T ss_dssp             TTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-C
T ss_pred             chhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-C
Confidence            344445555554444443   2367788888888887777   45678888888887 56778877788888888886 5


Q ss_pred             ccccccCC
Q 012450          228 LESLSGLF  235 (463)
Q Consensus       228 L~~l~~~~  235 (463)
                      ++.++..+
T Consensus       273 L~~lp~~l  280 (622)
T 3g06_A          273 LTRLPESL  280 (622)
T ss_dssp             CCSCCGGG
T ss_pred             CCcCCHHH
Confidence            66666544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.81  E-value=6.5e-19  Score=181.72  Aligned_cols=210  Identities=25%  Similarity=0.404  Sum_probs=149.5

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   81 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   81 (463)
                      ..+++|++|++++  .+...   ..+.++++|+.|++++| .+..++.+..+++|++|++++|.++.++. ++.+++|+.
T Consensus       153 ~~l~~L~~L~l~~--~~~~~---~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  225 (466)
T 1o6v_A          153 SGLTSLQQLSFGN--QVTDL---KPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDE  225 (466)
T ss_dssp             TTCTTCSEEEEEE--SCCCC---GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred             ccCCcccEeecCC--cccCc---hhhccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCE
Confidence            4677888888853  34444   33777888888888875 46666667778888888888887776655 667788888


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT  161 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~  161 (463)
                      |++++|. +..++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|. +..++. +..+++|+.|++++|.+.
T Consensus       226 L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~  300 (466)
T 1o6v_A          226 LSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLE  300 (466)
T ss_dssp             EECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCS
T ss_pred             EECCCCC-cccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCccc
Confidence            8888764 44444 46677888888888888777665 6777888888888775 444554 677778888888888777


Q ss_pred             CcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccCcc
Q 012450          162 ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCT  226 (463)
Q Consensus       162 ~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~c~  226 (463)
                      +++. +..+++|+.|++++|+++.++. +..+++|+.|++++| .+..++.+  .++|+.|++++|.
T Consensus       301 ~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          301 DISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             CCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred             Cchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence            7654 6677888888888887776654 677788888888877 34444432  3567777777764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=6.6e-19  Score=194.71  Aligned_cols=111  Identities=17%  Similarity=0.161  Sum_probs=56.6

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCc-cCcc--ccCCC
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEE-LPSS--IGCLS   77 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~-lp~~--i~~l~   77 (463)
                      .++++|++|+|++|.....++ +..+.++++|++|+|++|......|. ++.+++|++|+|++|.++. +|..  ++.++
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             cccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            345555555555554444432 34455555555555555433222233 5555555555555555553 3332  55555


Q ss_pred             CccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCC
Q 012450           78 RLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAI  113 (463)
Q Consensus        78 ~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i  113 (463)
                      +|++|++++|......+ ..++++++|++|++++|.+
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            66666665554332222 3455566666666665544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=8.4e-20  Score=178.23  Aligned_cols=192  Identities=15%  Similarity=0.069  Sum_probs=127.4

Q ss_pred             CcCccEEeeecCCCCCCCCC-C--CCCCCccEEEeeccCCCcc-C----ccccCCCCccEEeeecCCCCCccchhcCCCC
Q 012450           30 LNKLVILNLSGCSKLKSLPE-I--SSAGNIEKILLDGTAIEEL-P----SSIGCLSRLLELNLGDCKNLKTLPSSLCKLK  101 (463)
Q Consensus        30 l~~L~~L~L~~c~~l~~lp~-l--~~l~~L~~L~L~~~~i~~l-p----~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~  101 (463)
                      +++|++|++++|...+..|. +  ..+++|++|++++|.++.. +    ..+..+++|++|++++|......+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            45688888887765555655 4  7777888888888777642 2    2234577788888887765444556677778


Q ss_pred             CCcEEEEECCCCcc---CC--ccCCCCCCccEEecCCCCCCCcCccc----CCCCCCccEEEeeCCCCCCc-ccccCCc-
Q 012450          102 SLEEICLTGSAIEE---LP--SPIECLSALCVLDLGDCKSLKSLKLP----FDGLYSLTYLYLTDCAITEL-PESLGLL-  170 (463)
Q Consensus       102 ~L~~L~l~~~~i~~---lp--~~i~~l~~L~~L~l~~c~~l~~l~~~----l~~l~~L~~L~L~~~~l~~~-p~~l~~l-  170 (463)
                      +|++|++++|.+..   ++  ..+..+++|++|++++|. ++.++..    +..+++|++|+|++|.+.+. |..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            88888888877642   32  233567778888888775 4444431    35667788888888887774 6666555 


Q ss_pred             --ccccccccccccccccchhhhCCCCccEeccccccccccCC--CCCCCccEeeccCc
Q 012450          171 --SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP--KLPCNLYWLDAQHC  225 (463)
Q Consensus       171 --~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~--~l~~~L~~L~i~~c  225 (463)
                        ++|++|+|++|+++.+|..+.  ++|+.|++++|. ++.+|  ...++|+.|++++.
T Consensus       249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSST
T ss_pred             CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCchhhhCCCccEEECcCC
Confidence              578888888888877776553  678888888774 33333  23356666666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=1e-18  Score=188.41  Aligned_cols=226  Identities=23%  Similarity=0.250  Sum_probs=152.7

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCC-CCCCCC--CC--CCCCccEEEeeccCCCcc-CccccCCC
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSK-LKSLPE--IS--SAGNIEKILLDGTAIEEL-PSSIGCLS   77 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~-l~~lp~--l~--~l~~L~~L~L~~~~i~~l-p~~i~~l~   77 (463)
                      +++|++|++++|. ++.++ +..+.++++|++|++++|.. +..++.  +.  ..++|+.|++++|.++.+ |..+..++
T Consensus       328 l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          328 LKCLEHLNMEDND-IPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             CTTCCEEECCSCC-BCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCCCEEECCCCc-cCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence            4455555555432 22221 33455555555555555421 222221  11  124566666666666655 45678889


Q ss_pred             CccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCC--CCcCcccCCCCCCccEE
Q 012450           78 RLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKS--LKSLKLPFDGLYSLTYL  153 (463)
Q Consensus        78 ~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~--l~~l~~~l~~l~~L~~L  153 (463)
                      +|+.|++++|.....+| ..+.++++|+.|++++|.+..+ +..+..+++|+.|++++|..  +..+|..+..+++|+.|
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            99999999976555565 5688899999999999988765 44677888999999988763  24567778888889999


Q ss_pred             EeeCCCCCCccc-ccCCcccccccccccccccccch---------hhhCCCCccEeccccccccccCCC----CCCCccE
Q 012450          154 YLTDCAITELPE-SLGLLSSLEELYLERNNFERIPE---------SIIRLSKLSSLLVSYCERLQSLPK----LPCNLYW  219 (463)
Q Consensus       154 ~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~---------~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~  219 (463)
                      ++++|.++.++. .+..+++|++|++++|+++.++.         .+..+++|+.|++++| .++.+|.    -.++|+.
T Consensus       486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcce
Confidence            999998888654 47788889999999988876532         2677888999999887 4556664    1357888


Q ss_pred             eeccCccccccccc
Q 012450          220 LDAQHCTTLESLSG  233 (463)
Q Consensus       220 L~i~~c~~L~~l~~  233 (463)
                      |+++++ .++.++.
T Consensus       565 L~Ls~N-~l~~l~~  577 (680)
T 1ziw_A          565 IDLGLN-NLNTLPA  577 (680)
T ss_dssp             EECCSS-CCCCCCT
T ss_pred             eECCCC-CCCcCCH
Confidence            888664 5666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=6.2e-19  Score=168.95  Aligned_cols=198  Identities=20%  Similarity=0.245  Sum_probs=139.3

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccC-ccccCCCCccE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLE   81 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~   81 (463)
                      ++|++|++++| .++.++ +..+.++++|++|++++| .+..++.  +..+++|++|++++|.++.++ ..+..+++|++
T Consensus        28 ~~l~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTC-CCCEEC-TTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCC-cccccC-HhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence            35788888874 455552 346777888888888886 4555554  777888888888888887665 45777888888


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCcc--CCccCCCCCCccEEecCCCCCCCcCcccCCCCCCcc----EEEe
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT----YLYL  155 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~----~L~L  155 (463)
                      |++++|......+..+..+++|++|++++|.++.  +|..+..+++|++|++++|......+..+..+++|+    .|++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            8888765433333357778888888888888875  577778888888888887763332333344444444    7888


Q ss_pred             eCCCCCCcccccCCcccccccccccccccccchh-hhCCCCccEecccccc
Q 012450          156 TDCAITELPESLGLLSSLEELYLERNNFERIPES-IIRLSKLSSLLVSYCE  205 (463)
Q Consensus       156 ~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~c~  205 (463)
                      ++|.+..++.......+|+.|++++|+++.+|.. +..+++|+.|++++|+
T Consensus       185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            8888877766666666788888888888777654 4678888888888774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=6.2e-19  Score=190.19  Aligned_cols=228  Identities=25%  Similarity=0.266  Sum_probs=145.8

Q ss_pred             CCCCCcceeecccccC-cCCCCCcccccC--CcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccC-ccccC
Q 012450            2 QHHGKLNQIIMAACNI-FTKTPNPSLIQH--LNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELP-SSIGC   75 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~-l~~~~~~~~~~~--l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp-~~i~~   75 (463)
                      .++++|++|++++|.. +..++ ...+..  .++|+.|++++|......|. +..+++|+.|++++|.+. .+| ..+..
T Consensus       350 ~~l~~L~~L~Ls~n~~~~~~l~-~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  428 (680)
T 1ziw_A          350 TGLINLKYLSLSNSFTSLRTLT-NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG  428 (680)
T ss_dssp             TTCTTCCEEECTTCBSCCCEEC-TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred             ccccCCcEEECCCCchhhhhcc-hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence            5678899999988642 22221 112222  25778888887654444444 777778888888887776 354 45677


Q ss_pred             CCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccE
Q 012450           76 LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY  152 (463)
Q Consensus        76 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~  152 (463)
                      +++|++|++++|......+..+..+++|+.|++++|.++   .+|..+..+++|+.|++++|......+..+.++++|+.
T Consensus       429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  508 (680)
T 1ziw_A          429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI  508 (680)
T ss_dssp             CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence            777888888777644444556667777777777777664   45666777777777777776633333334667777777


Q ss_pred             EEeeCCCCCCccc---------ccCCcccccccccccccccccch-hhhCCCCccEeccccccccccCCCC----CCCcc
Q 012450          153 LYLTDCAITELPE---------SLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPKL----PCNLY  218 (463)
Q Consensus       153 L~L~~~~l~~~p~---------~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~l----~~~L~  218 (463)
                      |++++|.++.++.         .+..+++|+.|++++|+++.+|. .+..+++|+.|++++| .++.+|..    .++|+
T Consensus       509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~  587 (680)
T 1ziw_A          509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLK  587 (680)
T ss_dssp             EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCC
Confidence            7777777765321         25667777777777777777764 4667777777777766 34455531    25677


Q ss_pred             EeeccCcccccccc
Q 012450          219 WLDAQHCTTLESLS  232 (463)
Q Consensus       219 ~L~i~~c~~L~~l~  232 (463)
                      .|+++++ .++.++
T Consensus       588 ~L~L~~N-~l~~~~  600 (680)
T 1ziw_A          588 SLNLQKN-LITSVE  600 (680)
T ss_dssp             EEECTTS-CCCBCC
T ss_pred             EEECCCC-cCCccC
Confidence            7777665 344443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=1.7e-18  Score=182.68  Aligned_cols=125  Identities=14%  Similarity=0.155  Sum_probs=86.7

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      ++|++|+|++| .++.++ +..+.++++|++|+|++| .++.+ |. ++.+++|++|++++|.++++|..  .+++|++|
T Consensus        52 ~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQN-SISELR-MPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSS-CCCCCC-GGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEE
T ss_pred             CCcCEEECCCC-CccccC-hhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEE
Confidence            57888888884 455553 467788888888888886 44444 44 77888888888888888888776  78888888


Q ss_pred             eeecCCCCC-ccchhcCCCCCCcEEEEECCCCccCCccCCCCCCc--cEEecCCCCC
Q 012450           83 NLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEELPSPIECLSAL--CVLDLGDCKS  136 (463)
Q Consensus        83 ~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L--~~L~l~~c~~  136 (463)
                      ++++|.... .+|..++++++|++|++++|.++..  .+..+++|  +.|++++|..
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence            888865333 2346778888888888888777642  23334444  6666666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=9.2e-19  Score=182.82  Aligned_cols=213  Identities=19%  Similarity=0.193  Sum_probs=167.6

Q ss_pred             CCcceeecccccCcCCCCCcccc-----cCCcCccEEeeecCCCCCCCCC--CCCC---CCccEEEeeccCCCccCcccc
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLI-----QHLNKLVILNLSGCSKLKSLPE--ISSA---GNIEKILLDGTAIEELPSSIG   74 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~-----~~l~~L~~L~L~~c~~l~~lp~--l~~l---~~L~~L~L~~~~i~~lp~~i~   74 (463)
                      ++|++|++++|...+.+  |..+     ..+++|+.+++++|..  .+|.  +..+   .+|+.|++++|.+..++. ..
T Consensus       247 ~~L~~L~l~~n~l~~~~--p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~  321 (520)
T 2z7x_B          247 TTVWYFSISNVKLQGQL--DFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS  321 (520)
T ss_dssp             SSCSEEEEEEEEEESCC--CCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred             CcccEEEeecccccCcc--ccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence            46777777776544466  5556     7788888888888654  6663  3322   578888888888775542 26


Q ss_pred             CCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCcc---CCccCCCCCCccEEecCCCCCCCcCccc-CCCCCCc
Q 012450           75 CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE---LPSPIECLSALCVLDLGDCKSLKSLKLP-FDGLYSL  150 (463)
Q Consensus        75 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L  150 (463)
                      .+++|++|++++|.....+|..+..+++|+.|++++|.++.   +|..+..+++|++|++++|.....+|.. +..+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            88999999999987777788889999999999999999985   4567899999999999999855547754 7788999


Q ss_pred             cEEEeeCCCCCC-cccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC----CCCccEeeccCc
Q 012450          151 TYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL----PCNLYWLDAQHC  225 (463)
Q Consensus       151 ~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l----~~~L~~L~i~~c  225 (463)
                      +.|++++|.+++ +|..+.  ++|+.|++++|+++.+|..+..+++|+.|++++| .++.+|..    .++|+.|+++++
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence            999999999976 555443  7999999999999999998889999999999998 46667652    245666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.79  E-value=4.9e-18  Score=174.60  Aligned_cols=197  Identities=28%  Similarity=0.384  Sum_probs=135.9

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   84 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l   84 (463)
                      ++|++|++++ +.++.+  |..   +++|+.|++++| .+..+|.+.  ++|++|++++|.++.+| .++.+++|++|++
T Consensus        91 ~~L~~L~l~~-n~l~~l--p~~---~~~L~~L~l~~n-~l~~l~~~~--~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           91 PHLESLVASC-NSLTEL--PEL---PQSLKSLLVDNN-NLKALSDLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             TTCSEEECCS-SCCSSC--CCC---CTTCCEEECCSS-CCSCCCSCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred             CCCCEEEccC-CcCCcc--ccc---cCCCcEEECCCC-ccCcccCCC--CCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence            4677777776 445555  332   367888888875 555555432  67888888888888777 4778888888888


Q ss_pred             ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450           85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP  164 (463)
Q Consensus        85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p  164 (463)
                      ++|. ++.+|..   ..+|++|++++|.++.+| .++.+++|++|++++|. ++.+|..   .++|+.|++++|.+..+|
T Consensus       161 ~~N~-l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~l~~lp  231 (454)
T 1jl5_A          161 DNNS-LKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNILEELP  231 (454)
T ss_dssp             CSSC-CSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSSCC
T ss_pred             CCCc-CcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCcCCccc
Confidence            8763 5556653   347888888888887776 57778888888887775 4445432   246777777777777776


Q ss_pred             cccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCc
Q 012450          165 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC  225 (463)
Q Consensus       165 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c  225 (463)
                      . ++.+++|++|++++|+++.+|..   +++|+.|++++|. ++.+|..+++|+.|+++++
T Consensus       232 ~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          232 E-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             C-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             c-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence            3 67777777777777777766642   3667777777763 5556666667777777665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=3.9e-18  Score=162.96  Aligned_cols=176  Identities=25%  Similarity=0.374  Sum_probs=150.0

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE   81 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~   81 (463)
                      ++|++|+|++| .++.++ +..+.++++|++|++++| .++.+|.  +..+++|++|++++|.++.++.. +..+++|++
T Consensus        37 ~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSN-KLSSLP-SKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSS-CCSCCC-TTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred             CCCCEEECcCC-CCCeeC-HHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence            57999999995 567773 457899999999999996 5677776  68899999999999999988765 688999999


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCA  159 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~~  159 (463)
                      |++++|......+..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.++ ..+.++++|+.|++++|.
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCc
Confidence            99999765444456688999999999999999998875 7899999999999987 44454 457889999999999999


Q ss_pred             CCCccc-ccCCccccccccccccccc
Q 012450          160 ITELPE-SLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       160 l~~~p~-~l~~l~~L~~L~Ls~n~l~  184 (463)
                      ++.+|. .+..+++|+.|++++|.+.
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          193 LKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcCCHHHhccccCCCEEEecCCCee
Confidence            999775 4778999999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=4.2e-18  Score=188.28  Aligned_cols=235  Identities=21%  Similarity=0.227  Sum_probs=153.4

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCcc-CccccCCCCccEE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL   82 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L   82 (463)
                      ++|+.|+|++|......  +..+..+++|+.|+|++|......|. +..+++|++|++++|.++.+ |..+..+++|+.|
T Consensus       266 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLN--SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCCEEC--SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred             CCccEEECCCCcccccC--hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence            67888888875433333  56677788888888887643333343 77788888888888887765 5567778888888


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-------------------c----------------------CC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-------------------P----------------------IE  121 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-------------------~----------------------i~  121 (463)
                      ++++|......+..+..+++|+.|++++|.++.++.                   .                      +.
T Consensus       344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~  423 (844)
T 3j0a_A          344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL  423 (844)
T ss_dssp             ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred             ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence            888764333333456677777777777777665432                   1                      12


Q ss_pred             CCCCccEEecCCCCCCCcCcc--cCCCCCCccEEEeeCCCCCC------cccccCCcccccccccccccccccch-hhhC
Q 012450          122 CLSALCVLDLGDCKSLKSLKL--PFDGLYSLTYLYLTDCAITE------LPESLGLLSSLEELYLERNNFERIPE-SIIR  192 (463)
Q Consensus       122 ~l~~L~~L~l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~l~~------~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~  192 (463)
                      .+++|+.|++++|.. +.++.  .+..+++|+.|++++|.+..      .+..+..+++|+.|+|++|+++.+|. .+..
T Consensus       424 ~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  502 (844)
T 3j0a_A          424 RVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH  502 (844)
T ss_dssp             TCTTCCEEEEESCCC-CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred             cCCccceeeCCCCcc-cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence            445555555555542 22111  13345666666666666653      23446788899999999999987664 4688


Q ss_pred             CCCccEeccccccccccCCC--CCCCccEeeccCcccccccccCCCCceeEEE
Q 012450          193 LSKLSSLLVSYCERLQSLPK--LPCNLYWLDAQHCTTLESLSGLFSSYKCVFF  243 (463)
Q Consensus       193 l~~L~~L~L~~c~~l~~l~~--l~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~  243 (463)
                      +++|+.|+|++| .++.+|.  ++++|+.|+++++.--...+..+..+..+.+
T Consensus       503 l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l  554 (844)
T 3j0a_A          503 LTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDI  554 (844)
T ss_dssp             CCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEE
T ss_pred             hhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEe
Confidence            999999999998 4666654  4578999999887543334444445554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=1.2e-19  Score=177.86  Aligned_cols=217  Identities=14%  Similarity=0.074  Sum_probs=172.5

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   81 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   81 (463)
                      +++++|++|+|++| .++..  ++ +..+++|++|++++| .++.++   ..++|++|++++|.++.++..  .+++|++
T Consensus        55 ~~l~~L~~L~Ls~n-~l~~~--~~-~~~l~~L~~L~Ls~n-~l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~  124 (317)
T 3o53_A           55 APFTKLELLNLSSN-VLYET--LD-LESLSTLRTLDLNNN-YVQELL---VGPSIETLHAANNNISRVSCS--RGQGKKN  124 (317)
T ss_dssp             TTCTTCCEEECTTS-CCEEE--EE-ETTCTTCCEEECCSS-EEEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEE
T ss_pred             hCCCcCCEEECCCC-cCCcc--hh-hhhcCCCCEEECcCC-cccccc---CCCCcCEEECCCCccCCcCcc--ccCCCCE
Confidence            57899999999995 45555  33 889999999999996 455444   458999999999999987754  4789999


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCC-ccC-CCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPI-ECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA  159 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i-~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~  159 (463)
                      |++++|......+..+..+++|+.|++++|.++.++ ..+ ..+++|++|++++|. ++.++. ...+++|+.|++++|.
T Consensus       125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK  202 (317)
T ss_dssp             EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC
T ss_pred             EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCc
Confidence            999997655544557888999999999999998764 334 478999999999987 556654 4468999999999999


Q ss_pred             CCCcccccCCcccccccccccccccccchhhhCCCCccEecccccccc-ccCCCC---CCCccEeeccCcccccc
Q 012450          160 ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERL-QSLPKL---PCNLYWLDAQHCTTLES  230 (463)
Q Consensus       160 l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l-~~l~~l---~~~L~~L~i~~c~~L~~  230 (463)
                      ++++|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|+.. ..++..   .+.|+.|++.++..++.
T Consensus       203 l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            999888899999999999999999999999999999999999998654 233321   23456666665555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.79  E-value=7.9e-19  Score=185.05  Aligned_cols=217  Identities=19%  Similarity=0.176  Sum_probs=132.8

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   81 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   81 (463)
                      +.+++|++|++++| .++++  +..+..+ +|+.|++++|. +..+|. ..+++|+.|++++|.+...... ..+++|++
T Consensus       279 ~~l~~L~~L~l~~~-~l~~l--~~~~~~~-~L~~L~l~~n~-~~~l~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~  351 (570)
T 2z63_A          279 NCLTNVSSFSLVSV-TIERV--KDFSYNF-GWQHLELVNCK-FGQFPT-LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEF  351 (570)
T ss_dssp             GGGTTCSEEEEESC-EECSC--CBCCSCC-CCSEEEEESCB-CSSCCB-CBCSSCCEEEEESCBSCCBCCC-CBCTTCCE
T ss_pred             cCcCcccEEEecCc-cchhh--hhhhccC-CccEEeeccCc-ccccCc-ccccccCEEeCcCCcccccccc-ccCCCCCE
Confidence            35688999999885 46667  6777777 88888888864 446665 4566677777777665533222 55666777


Q ss_pred             EeeecCCCCCc--cchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCC
Q 012450           82 LNLGDCKNLKT--LPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        82 L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~  158 (463)
                      |++++|.....  .|..+..+++|+.|++++|.++.++..+..+++|++|++++|......+ ..+..+++|+.|++++|
T Consensus       352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  431 (570)
T 2z63_A          352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  431 (570)
T ss_dssp             EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred             EeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence            77766542221  1455566666666666666666665556666666666666655333222 23556666666666666


Q ss_pred             CCCC-cccccCCccccccccccccccc--ccchhhhCCCCccEeccccccccccCCC---CCCCccEeeccCc
Q 012450          159 AITE-LPESLGLLSSLEELYLERNNFE--RIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHC  225 (463)
Q Consensus       159 ~l~~-~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~i~~c  225 (463)
                      .+.+ .|..+..+++|++|++++|.++  .+|..+..+++|+.|++++|......|.   -.++|+.|++++|
T Consensus       432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            6655 4455566666666666666664  4566666666666666666643322232   1245666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=2.3e-19  Score=186.23  Aligned_cols=195  Identities=14%  Similarity=0.059  Sum_probs=164.8

Q ss_pred             CCCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450            1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLL   80 (463)
Q Consensus         1 l~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~   80 (463)
                      +..+++|++|+|++|. ++..  ++ +..+++|++|+|++| .++.+|.   .++|++|++++|.++.++..  .+++|+
T Consensus        54 ~~~l~~L~~L~Ls~N~-l~~~--~~-l~~l~~L~~L~Ls~N-~l~~l~~---~~~L~~L~L~~N~l~~~~~~--~l~~L~  123 (487)
T 3oja_A           54 LAPFTKLELLNLSSNV-LYET--LD-LESLSTLRTLDLNNN-YVQELLV---GPSIETLHAANNNISRVSCS--RGQGKK  123 (487)
T ss_dssp             GTTCTTCCEEECTTSC-CEEE--EE-CTTCTTCCEEECCSS-EEEEEEE---CTTCCEEECCSSCCCCEEEC--CCSSCE
T ss_pred             HhCCCCCCEEEeeCCC-CCCC--cc-cccCCCCCEEEecCC-cCCCCCC---CCCcCEEECcCCcCCCCCcc--ccCCCC
Confidence            3578999999999954 5555  23 889999999999996 4555543   48999999999999987753  578999


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCC-CCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIE-CLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~-~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~  158 (463)
                      .|++++|......|..++.+++|+.|++++|.++.+ |..+. .+++|+.|++++|. ++.++. ...+++|+.|+|++|
T Consensus       124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN  201 (487)
T ss_dssp             EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS
T ss_pred             EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCC
Confidence            999999876666677788999999999999999864 55554 78999999999987 555554 456899999999999


Q ss_pred             CCCCcccccCCcccccccccccccccccchhhhCCCCccEecccccccc
Q 012450          159 AITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERL  207 (463)
Q Consensus       159 ~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l  207 (463)
                      .++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus       202 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            9999888899999999999999999999999999999999999998654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=2.3e-18  Score=180.79  Aligned_cols=195  Identities=21%  Similarity=0.252  Sum_probs=125.9

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccC-ccccCCCCccE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLE   81 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~   81 (463)
                      +.....+.++ +.++++  |..+.  ++|++|++++|. ++.+ |. +..+++|++|++++|.++.++ ..+..+++|++
T Consensus         5 ~~~~~c~~~~-~~l~~i--p~~~~--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   78 (549)
T 2z81_A            5 DASGVCDGRS-RSFTSI--PSGLT--AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH   78 (549)
T ss_dssp             CTTSEEECTT-SCCSSC--CSCCC--TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCceEECCC-Cccccc--cccCC--CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence            3444455554 456666  44442  677777777754 4443 33 677777777777777777554 44677777777


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCcc--CCccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~  158 (463)
                      |++++|......|..++++++|++|++++|.++.  +|..++.+++|++|++++|..++.++ ..+.++++|+.|++++|
T Consensus        79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            7777765443334447777777777777777763  35566777777777777776555554 34666777777777777


Q ss_pred             CCCC-cccccCCcccccccccccccccccchhh-hCCCCccEecccccc
Q 012450          159 AITE-LPESLGLLSSLEELYLERNNFERIPESI-IRLSKLSSLLVSYCE  205 (463)
Q Consensus       159 ~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~c~  205 (463)
                      .+.+ .|..++.+++|++|++++|.+..+|..+ ..+++|+.|++++|.
T Consensus       159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred             cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence            7766 5666777777777777777766666543 456777777777764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=4.4e-18  Score=164.57  Aligned_cols=176  Identities=21%  Similarity=0.262  Sum_probs=153.7

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   83 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   83 (463)
                      .++|+.|+|++|. ++.+. +..+..+++|+.|+|++| .++.++..+.+++|++|++++|.++.+|..+..+++|++|+
T Consensus        30 ~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEE
Confidence            3689999999954 55553 577999999999999995 57777777899999999999999999999999999999999


Q ss_pred             eecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCC
Q 012450           84 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAI  160 (463)
Q Consensus        84 l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l  160 (463)
                      +++|. ++.+| ..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|. ++.+|. .+..+++|+.|+|++|.+
T Consensus       107 l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          107 VSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             CCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC
Confidence            99975 45554 6789999999999999999988765 5789999999999987 566665 457899999999999999


Q ss_pred             CCcccccCCccccccccccccccc
Q 012450          161 TELPESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       161 ~~~p~~l~~l~~L~~L~Ls~n~l~  184 (463)
                      +.+|..+...++|+.|+|++|.+.
T Consensus       185 ~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          185 YTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccChhhcccccCCeEEeCCCCcc
Confidence            999999999999999999999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=1.9e-18  Score=182.21  Aligned_cols=132  Identities=24%  Similarity=0.347  Sum_probs=104.9

Q ss_pred             CCCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCc-cccCCC
Q 012450            1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPS-SIGCLS   77 (463)
Q Consensus         1 l~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~-~i~~l~   77 (463)
                      +.++++|++|+|++| .++.++ +..+.++++|++|++++|. ++.++ . ++.+++|++|++++|.++.++. .++.++
T Consensus        48 ~~~l~~L~~L~Ls~n-~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  124 (570)
T 2z63_A           48 FFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  124 (570)
T ss_dssp             TTTCSSCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred             hhCCCCceEEECCCC-cCCccC-cccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCccccccc
Confidence            367899999999996 466653 5678899999999999964 55555 3 8899999999999999998876 588999


Q ss_pred             CccEEeeecCCCCC-ccchhcCCCCCCcEEEEECCCCccCC-ccCCCCCCc----cEEecCCCC
Q 012450           78 RLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSAL----CVLDLGDCK  135 (463)
Q Consensus        78 ~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L----~~L~l~~c~  135 (463)
                      +|++|++++|.... .+|..++++++|++|++++|.++.++ ..++.+++|    +.|++++|.
T Consensus       125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence            99999999976544 47888999999999999999888664 345555555    566666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.4e-18  Score=168.18  Aligned_cols=172  Identities=27%  Similarity=0.375  Sum_probs=149.1

Q ss_pred             ccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCc
Q 012450           25 SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE  104 (463)
Q Consensus        25 ~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  104 (463)
                      .....+++|+.|++++| .+..++.+..+++|++|++++|.++.++. +..+++|++|++++|. +..+|. +..+++|+
T Consensus        40 ~~~~~l~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~  115 (291)
T 1h6t_A           40 VTQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLK  115 (291)
T ss_dssp             ECHHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCC
T ss_pred             cchhhcCcccEEEccCC-CcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCC
Confidence            34567899999999986 67788888889999999999999998877 8899999999999974 566654 88999999


Q ss_pred             EEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCccccccccccccccc
Q 012450          105 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       105 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~  184 (463)
                      .|++++|.++.++ .+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+.+++. +..+++|+.|++++|.++
T Consensus       116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence            9999999999874 67889999999999886 55554 48889999999999999999776 889999999999999999


Q ss_pred             ccchhhhCCCCccEecccccc
Q 012450          185 RIPESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       185 ~lp~~l~~l~~L~~L~L~~c~  205 (463)
                      .++. +..+++|+.|++++|+
T Consensus       192 ~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          192 DLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             BCGG-GTTCTTCSEEEEEEEE
T ss_pred             CChh-hccCCCCCEEECcCCc
Confidence            8874 8899999999999985

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=1e-17  Score=178.25  Aligned_cols=81  Identities=30%  Similarity=0.329  Sum_probs=63.8

Q ss_pred             CCCCCccEEEeeCCCCCC--cccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCCC----CCCc
Q 012450          145 DGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPKL----PCNL  217 (463)
Q Consensus       145 ~~l~~L~~L~L~~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~l----~~~L  217 (463)
                      ..+++|+.|++++|.+..  .|..+..+++|+.|+|++|+++.+ |..+.++++|+.|+|++| .++.++..    .++|
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCC
Confidence            345678999999987554  677788999999999999999876 567888999999999998 45555432    3678


Q ss_pred             cEeeccCcc
Q 012450          218 YWLDAQHCT  226 (463)
Q Consensus       218 ~~L~i~~c~  226 (463)
                      +.|+++++.
T Consensus       545 ~~L~Ls~N~  553 (635)
T 4g8a_A          545 QVLDYSLNH  553 (635)
T ss_dssp             CEEECTTSC
T ss_pred             CEEECCCCc
Confidence            999998863

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=2.2e-17  Score=175.58  Aligned_cols=196  Identities=25%  Similarity=0.278  Sum_probs=144.3

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .+++|++|+|++| .++.+  +.   .+++|++|++++| .++.+|.  .+++|+.|++++|.++.+|..   +++|++|
T Consensus        79 ~l~~L~~L~Ls~N-~l~~l--p~---~l~~L~~L~Ls~N-~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L  146 (622)
T 3g06_A           79 LPPELRTLEVSGN-QLTSL--PV---LPPGLLELSIFSN-PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQEL  146 (622)
T ss_dssp             CCTTCCEEEECSC-CCSCC--CC---CCTTCCEEEECSC-CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEE
T ss_pred             cCCCCCEEEcCCC-cCCcC--CC---CCCCCCEEECcCC-cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEE
Confidence            3678999999985 57777  44   6789999999985 6677776  567888888888888888864   4778888


Q ss_pred             eeecCCCCCccchhcCC-----------------CCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCC
Q 012450           83 NLGDCKNLKTLPSSLCK-----------------LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD  145 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~-----------------l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~  145 (463)
                      ++++|. +..+|..+.+                 +++|+.|++++|.++.+|..   +++|+.|++++|. ++.+|.   
T Consensus       147 ~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~~---  218 (622)
T 3g06_A          147 SVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPA---  218 (622)
T ss_dssp             ECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC---
T ss_pred             ECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCc-ccccCC---
Confidence            888763 4444432222                 27788888888888887754   4788899998876 566664   


Q ss_pred             CCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC---CCCccEeec
Q 012450          146 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDA  222 (463)
Q Consensus       146 ~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i  222 (463)
                      .+++|+.|++++|.++.+|   ..+++|+.|++++|+++.+|.   .+++|+.|++++| .++.+|..   .++|+.|++
T Consensus       219 ~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          219 LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL  291 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEEC
T ss_pred             CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEe
Confidence            3478899999999888887   466889999999999888886   6788999999988 45555531   134444554


Q ss_pred             cCc
Q 012450          223 QHC  225 (463)
Q Consensus       223 ~~c  225 (463)
                      +++
T Consensus       292 ~~N  294 (622)
T 3g06_A          292 EGN  294 (622)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=1.6e-17  Score=156.89  Aligned_cols=168  Identities=27%  Similarity=0.372  Sum_probs=81.5

Q ss_pred             ccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCc-cccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450           33 LVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG  110 (463)
Q Consensus        33 L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  110 (463)
                      .+.+++++ ..++.+|. +.  ++|+.|++++|.++.++. .+..+++|++|++++|......+..+..+++|+.|++++
T Consensus        16 ~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            34444444 23444443 22  345555555555544332 244455555555555433222233344555555555555


Q ss_pred             CCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCCCccc-ccCCcccccccccccccccccc
Q 012450          111 SAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIP  187 (463)
Q Consensus       111 ~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp  187 (463)
                      |.++.++. .+..+++|++|++++|. ++.++. .+..+++|+.|+|++|.+..+|. .+..+++|+.|+|++|+++.++
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            55554442 23455555555555543 233332 23455555555555555555443 3455555666666665555444


Q ss_pred             h-hhhCCCCccEeccccc
Q 012450          188 E-SIIRLSKLSSLLVSYC  204 (463)
Q Consensus       188 ~-~l~~l~~L~~L~L~~c  204 (463)
                      . .+..+++|+.|++++|
T Consensus       172 ~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             TTTTTTCTTCCEEECCSC
T ss_pred             HHHHhCCCCCCEEEeeCC
Confidence            3 4455555555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1.1e-17  Score=175.95  Aligned_cols=181  Identities=19%  Similarity=0.281  Sum_probs=154.1

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   84 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l   84 (463)
                      .+|+.|+|++| .++.+  |..+  +++|+.|+|++| .++.+|  ..+++|++|++++|.|+.+|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n-~L~~l--p~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRL-NLSSL--PDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSS-CCSCC--CSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCC-CCCcc--CHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence            38999999995 57777  5555  389999999996 677888  678999999999999999998 655  9999999


Q ss_pred             ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450           85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP  164 (463)
Q Consensus        85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p  164 (463)
                      ++|. ++.+|.   .+++|+.|++++|.++.+|.   .+++|++|++++|. ++.+|. +.  ++|+.|+|++|.++.+|
T Consensus       128 s~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          128 DNNQ-LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             CSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSCC
T ss_pred             CCCc-CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCchh
Confidence            9974 566887   68999999999999999987   67899999999987 666887 55  89999999999999998


Q ss_pred             cccCCcccc-------cccccccccccccchhhhCCCCccEeccccccccccC
Q 012450          165 ESLGLLSSL-------EELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL  210 (463)
Q Consensus       165 ~~l~~l~~L-------~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l  210 (463)
                      . +..  +|       +.|+|++|+++.+|..+..+++|+.|+|++|+.-..+
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            8 554  77       9999999999999999999999999999999754433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=3.8e-17  Score=154.33  Aligned_cols=174  Identities=22%  Similarity=0.314  Sum_probs=146.4

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE   81 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~   81 (463)
                      .+.+++++++ ..++.+  |..+.  ++|+.|+|++|. +..++.  +..+++|++|++++|.++.++.. +..+++|++
T Consensus        14 ~~~~~l~~~~-~~l~~~--p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           14 EGKKEVDCQG-KSLDSV--PSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             GGGTEEECTT-CCCSSC--CSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCeEEecCC-CCcccc--CCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence            4568899998 678888  56554  699999999965 455543  89999999999999999977654 789999999


Q ss_pred             EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCC
Q 012450           82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA  159 (463)
Q Consensus        82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~  159 (463)
                      |++++|......+..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.++. .+..+++|+.|+|++|.
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence            99999765444446678999999999999999998875 5889999999999986 556655 58899999999999999


Q ss_pred             CCCccc-ccCCcccccccccccccccc
Q 012450          160 ITELPE-SLGLLSSLEELYLERNNFER  185 (463)
Q Consensus       160 l~~~p~-~l~~l~~L~~L~Ls~n~l~~  185 (463)
                      +..++. .+..+++|+.|++++|.+..
T Consensus       167 l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          167 LQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            999665 67899999999999998853

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.75  E-value=3.3e-18  Score=166.88  Aligned_cols=177  Identities=21%  Similarity=0.221  Sum_probs=112.4

Q ss_pred             CCCccEEEeeccCCC-ccCccc--cCCCCccEEeeecCCCCCccc----hhcCCCCCCcEEEEECCCCccCC-ccCCCCC
Q 012450           53 AGNIEKILLDGTAIE-ELPSSI--GCLSRLLELNLGDCKNLKTLP----SSLCKLKSLEEICLTGSAIEELP-SPIECLS  124 (463)
Q Consensus        53 l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~  124 (463)
                      +++|++|++++|.++ ..|..+  ..+++|++|++++|......+    ..+..+++|++|++++|.++.++ ..++.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            455777777777776 344445  677777777777765443332    23456777777777777777654 4566777


Q ss_pred             CccEEecCCCCCCCc--Cc--ccCCCCCCccEEEeeCCCCCCcccc----cCCccccccccccccccccc-chhhhCC--
Q 012450          125 ALCVLDLGDCKSLKS--LK--LPFDGLYSLTYLYLTDCAITELPES----LGLLSSLEELYLERNNFERI-PESIIRL--  193 (463)
Q Consensus       125 ~L~~L~l~~c~~l~~--l~--~~l~~l~~L~~L~L~~~~l~~~p~~----l~~l~~L~~L~Ls~n~l~~l-p~~l~~l--  193 (463)
                      +|++|++++|.....  ++  ..+..+++|++|++++|.++.++..    ++.+++|++|+|++|+++.+ |..+..+  
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            777777777764321  21  1235667777777777777665432    35667777777777777654 5555555  


Q ss_pred             -CCccEeccccccccccCCC-CCCCccEeeccCccccccc
Q 012450          194 -SKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESL  231 (463)
Q Consensus       194 -~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~c~~L~~l  231 (463)
                       ++|+.|++++|. ++.+|. ++++|+.|+++++ .++.+
T Consensus       250 ~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~  287 (310)
T 4glp_A          250 SSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRA  287 (310)
T ss_dssp             CTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSC
T ss_pred             cCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCC
Confidence             577777777764 445554 4567777777665 34443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=2.9e-17  Score=163.08  Aligned_cols=219  Identities=25%  Similarity=0.332  Sum_probs=179.1

Q ss_pred             ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCC-ccCcc-ccCCCCccEEe
Q 012450            8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE-ELPSS-IGCLSRLLELN   83 (463)
Q Consensus         8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~   83 (463)
                      +.++.++ +.++++  |..+  .+++++|+|++| .++.+|.  +..+++|++|+|++|.+. .+|.. +.++++|.++.
T Consensus        12 ~~v~C~~-~~Lt~i--P~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQE-SKVTEI--PSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEES-TTCCSC--CTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             CEEEecC-CCCCcc--CcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            4566665 678888  6655  468999999995 7888886  899999999999999875 56654 67899988776


Q ss_pred             eecCCCCCcc-chhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCccc-CCCC-CCccEEEeeCCC
Q 012450           84 LGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLP-FDGL-YSLTYLYLTDCA  159 (463)
Q Consensus        84 l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~-l~~l-~~L~~L~L~~~~  159 (463)
                      +.+++.+..+ |..+..+++|+.|++++|.++.+|.. +....++..|++.++..+..++.. +..+ ..++.|++++|+
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            6666677777 46688999999999999999988753 456677889999888778877653 4444 468999999999


Q ss_pred             CCCcccccCCccccccccccc-ccccccch-hhhCCCCccEeccccccccccCCC-CCCCccEeeccCccccccccc
Q 012450          160 ITELPESLGLLSSLEELYLER-NNFERIPE-SIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLSG  233 (463)
Q Consensus       160 l~~~p~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~c~~L~~l~~  233 (463)
                      ++++|..+...++|++|++++ |.++.+|. .+..+++|+.|++++| .++.+|. ...+|+.|.+.++..|+.+|.
T Consensus       166 i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred             ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC
Confidence            999988888889999999985 67889985 5688999999999998 5888875 577899999999999998884

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.5e-17  Score=160.93  Aligned_cols=173  Identities=26%  Similarity=0.369  Sum_probs=151.4

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .+++|++|++++| .++.+   +.+..+++|+.|++++| .++.++.+..+++|++|++++|.++.++. +..+++|++|
T Consensus        44 ~l~~L~~L~l~~~-~i~~~---~~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             hcCcccEEEccCC-CcccC---hhHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence            3578999999995 56776   35889999999999996 56777779999999999999999998776 8999999999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  162 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~  162 (463)
                      ++++|. +..++ .+..+++|+.|++++|.++.+ ..+..+++|++|++++|. ++.++. +..+++|+.|++++|.+++
T Consensus       118 ~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          118 SLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             ECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred             ECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCCC
Confidence            999975 55564 588999999999999999988 578899999999999986 566665 8899999999999999999


Q ss_pred             cccccCCcccccccccccccccccc
Q 012450          163 LPESLGLLSSLEELYLERNNFERIP  187 (463)
Q Consensus       163 ~p~~l~~l~~L~~L~Ls~n~l~~lp  187 (463)
                      ++. +..+++|+.|++++|+++..|
T Consensus       193 l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          193 LRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             Chh-hccCCCCCEEECcCCcccCCc
Confidence            875 899999999999999987655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=1.5e-19  Score=177.84  Aligned_cols=213  Identities=19%  Similarity=0.225  Sum_probs=131.4

Q ss_pred             cceeecccccCcCCCCCcccccCC--cCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCc--cCccccCCCCccEE
Q 012450            7 LNQIIMAACNIFTKTPNPSLIQHL--NKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE--LPSSIGCLSRLLEL   82 (463)
Q Consensus         7 L~~L~L~~c~~l~~~~~~~~~~~l--~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L   82 (463)
                      ++.|+++++. +.    +..+..+  ++++.|+++++......+.+..+++|++|++++|.++.  ++..+..+++|++|
T Consensus        49 ~~~l~l~~~~-~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKN-LH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCB-CC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeecccccc-CC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            5667776632 22    2334444  66777777765443344445667777777777776652  56666677777777


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECC-CCc--cCCccCCCCCCccEEecCCCCCCCc--CcccCCCCC-CccEEEee
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIE--ELPSPIECLSALCVLDLGDCKSLKS--LKLPFDGLY-SLTYLYLT  156 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~l~~c~~l~~--l~~~l~~l~-~L~~L~L~  156 (463)
                      ++++|......+..+..+++|++|++++| .++  .++..+..+++|++|++++|..++.  ++..+..++ +|+.|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            77776544455666667777777777777 455  2555566677777777777744443  344455666 77777777


Q ss_pred             CC--CCCC--cccccCCccccccccccccc-cc-ccchhhhCCCCccEecccccccccc-----CCCCCCCccEeeccCc
Q 012450          157 DC--AITE--LPESLGLLSSLEELYLERNN-FE-RIPESIIRLSKLSSLLVSYCERLQS-----LPKLPCNLYWLDAQHC  225 (463)
Q Consensus       157 ~~--~l~~--~p~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~c~~l~~-----l~~l~~~L~~L~i~~c  225 (463)
                      +|  .+++  +|..+..+++|++|++++|. ++ ..+..+.++++|+.|++++|..+..     +.. .++|+.|++.+|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc
Confidence            77  3432  55566667777777777776 43 4455666777777777777753321     111 356777777766

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=4.8e-17  Score=161.42  Aligned_cols=213  Identities=15%  Similarity=0.138  Sum_probs=168.2

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccE-EEeeccCCCccCc-cccCCCCcc
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEK-ILLDGTAIEELPS-SIGCLSRLL   80 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~-L~L~~~~i~~lp~-~i~~l~~L~   80 (463)
                      +++++|+|++ +.++.++ +..+.++++|++|+|++|..++.+|.  +..+++|++ +.+.+|.++.++. .+..+++|+
T Consensus        30 ~~l~~L~Ls~-N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVL-TKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEES-CCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccC-CcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            5799999999 6788884 35689999999999999877777776  788888876 5566689998854 578999999


Q ss_pred             EEeeecCCCCCccc-hhcCCCCCCcEEEEEC-CCCccCCcc-CCCC-CCccEEecCCCCCCCcCcccCCCCCCccEEEee
Q 012450           81 ELNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPSP-IECL-SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT  156 (463)
Q Consensus        81 ~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~~-i~~l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~  156 (463)
                      +|++++|. +..+| ..+....++..|++.+ +.+..++.. +..+ ..++.|++++|. ++.++.......+|+.|++.
T Consensus       108 ~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          108 YLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLS  185 (350)
T ss_dssp             EEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECT
T ss_pred             cccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhc
Confidence            99999975 45554 3455667788899976 578877653 4444 468999999876 67787777777899999998


Q ss_pred             C-CCCCCccc-ccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCC--CCccEeecc
Q 012450          157 D-CAITELPE-SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLP--CNLYWLDAQ  223 (463)
Q Consensus       157 ~-~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~--~~L~~L~i~  223 (463)
                      + +.+..+|. .+..+++|+.|+|++|+++.+|..  .+.+|+.|.+.++..++.+|.+.  ++|+.+++.
T Consensus       186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT  254 (350)
T ss_dssp             TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred             cCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence            5 56777886 468999999999999999999853  46788888888888888888643  566666664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=5.9e-19  Score=173.67  Aligned_cols=194  Identities=18%  Similarity=0.245  Sum_probs=120.8

Q ss_pred             CccEEeeecCCCCCCCCC-CCCC--CCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCc-cchhcCCCCCCcEEE
Q 012450           32 KLVILNLSGCSKLKSLPE-ISSA--GNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKT-LPSSLCKLKSLEEIC  107 (463)
Q Consensus        32 ~L~~L~L~~c~~l~~lp~-l~~l--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~  107 (463)
                      .++.++++++. +.  +. +..+  ++++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~-~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKN-LH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCB-CC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeecccccc-CC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            36667776642 22  22 3344  667777777776665555566677777777777653322 566666777777777


Q ss_pred             EECCCCc-cCCccCCCCCCccEEecCCCCCCCc--CcccCCCCCCccEEEeeCC-CCCC--cccccCCcc-ccccccccc
Q 012450          108 LTGSAIE-ELPSPIECLSALCVLDLGDCKSLKS--LKLPFDGLYSLTYLYLTDC-AITE--LPESLGLLS-SLEELYLER  180 (463)
Q Consensus       108 l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~L~~~-~l~~--~p~~l~~l~-~L~~L~Ls~  180 (463)
                      +++|.++ ..+..++.+++|++|++++|..++.  ++..+.++++|+.|++++| .+++  ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            7777665 3455566677777777777754542  4444566677777777777 6664  555666677 777777777


Q ss_pred             cc--c--cccchhhhCCCCccEecccccccccc--CCC--CCCCccEeeccCcccc
Q 012450          181 NN--F--ERIPESIIRLSKLSSLLVSYCERLQS--LPK--LPCNLYWLDAQHCTTL  228 (463)
Q Consensus       181 n~--l--~~lp~~l~~l~~L~~L~L~~c~~l~~--l~~--l~~~L~~L~i~~c~~L  228 (463)
                      |.  +  ..+|..+..+++|+.|++++|..++.  ++.  -.++|+.|++++|..+
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  260 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  260 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence            73  3  34566666677777777777764331  111  1256777777777533

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=8.1e-18  Score=178.59  Aligned_cols=170  Identities=27%  Similarity=0.384  Sum_probs=112.6

Q ss_pred             ccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEE
Q 012450           27 IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEI  106 (463)
Q Consensus        27 ~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  106 (463)
                      +..+++|+.|++++| .+..++.+..+++|+.|+|++|.++.++. +..+++|+.|+|++|. +..+| .+..+++|+.|
T Consensus        39 ~~~L~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           39 QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHHHTTCCCCBCTTC-CCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEE
T ss_pred             hhcCCCCCEEECcCC-CCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEE
Confidence            445666777777664 45666666667777777777777766655 6667777777777653 44444 46667777777


Q ss_pred             EEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCccccccccccccccccc
Q 012450          107 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI  186 (463)
Q Consensus       107 ~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l  186 (463)
                      +|++|.+..++ .+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+.+++. +..+++|+.|+|++|.++.+
T Consensus       115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          115 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred             EecCCCCCCCc-cccCCCccCEEECCCCc-cCCch-hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC
Confidence            77777776653 46667777777777665 44443 36667777777777777766544 66777777777777777666


Q ss_pred             chhhhCCCCccEecccccc
Q 012450          187 PESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       187 p~~l~~l~~L~~L~L~~c~  205 (463)
                      | .+..+++|+.|+|++|+
T Consensus       191 ~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          191 R-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             G-GGTTCTTCSEEECCSEE
T ss_pred             h-HHccCCCCCEEEccCCc
Confidence            5 46667777777777764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=1.7e-19  Score=181.47  Aligned_cols=222  Identities=18%  Similarity=0.197  Sum_probs=152.7

Q ss_pred             CCCCcceeecccccCcCCCC--CcccccCCcCccEEeeecCC--CCC-CCCC--------CCCCCCccEEEeeccCCCc-
Q 012450            3 HHGKLNQIIMAACNIFTKTP--NPSLIQHLNKLVILNLSGCS--KLK-SLPE--------ISSAGNIEKILLDGTAIEE-   68 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~--~~~~~~~l~~L~~L~L~~c~--~l~-~lp~--------l~~l~~L~~L~L~~~~i~~-   68 (463)
                      .+++|++|+|++|..-...+  ....+..+++|++|+|++|.  .+. .+|.        +..+++|++|+|++|.++. 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            46788888888864333210  02346678888899888862  221 2232        2678888889988888875 


Q ss_pred             ----cCccccCCCCccEEeeecCCCCC----ccchhcCCC---------CCCcEEEEECCCCc--cCC---ccCCCCCCc
Q 012450           69 ----LPSSIGCLSRLLELNLGDCKNLK----TLPSSLCKL---------KSLEEICLTGSAIE--ELP---SPIECLSAL  126 (463)
Q Consensus        69 ----lp~~i~~l~~L~~L~l~~c~~l~----~lp~~l~~l---------~~L~~L~l~~~~i~--~lp---~~i~~l~~L  126 (463)
                          ++..+..+++|++|++++|....    .++..+..+         ++|++|++++|.++  .++   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence                66677888888899888875422    223333344         88888888888886  344   355677888


Q ss_pred             cEEecCCCCCCC------cCcccCCCCCCccEEEeeCCCCC-----CcccccCCcccccccccccccccc-----cchhh
Q 012450          127 CVLDLGDCKSLK------SLKLPFDGLYSLTYLYLTDCAIT-----ELPESLGLLSSLEELYLERNNFER-----IPESI  190 (463)
Q Consensus       127 ~~L~l~~c~~l~------~l~~~l~~l~~L~~L~L~~~~l~-----~~p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l  190 (463)
                      ++|++++|. ++      ..+..+..+++|+.|+|++|.++     .+|..+..+++|++|+|++|.++.     ++..+
T Consensus       190 ~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          190 HTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             CEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             CEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence            888888886 43      23335677888888888888884     377778888888888888888763     46666


Q ss_pred             hC--CCCccEeccccccccc----cCCCC----CCCccEeeccCc
Q 012450          191 IR--LSKLSSLLVSYCERLQ----SLPKL----PCNLYWLDAQHC  225 (463)
Q Consensus       191 ~~--l~~L~~L~L~~c~~l~----~l~~l----~~~L~~L~i~~c  225 (463)
                      ..  +++|+.|+|++|..-.    .+|..    .++|+.|++++|
T Consensus       269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            44  8888888888885332    24431    356777777665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=3.6e-17  Score=148.72  Aligned_cols=150  Identities=17%  Similarity=0.262  Sum_probs=120.3

Q ss_pred             CCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCcc-CCccCCCCCCccEE
Q 012450           51 SSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVL  129 (463)
Q Consensus        51 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L  129 (463)
                      +.+++|+.|++++|.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .+..++.+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            55678888888888888877 5788888888888887 445444 67788888888888888875 57778888888888


Q ss_pred             ecCCCCCCCcCcccCCCCCCccEEEeeCCC-CCCcccccCCcccccccccccccccccchhhhCCCCccEecccccc
Q 012450          130 DLGDCKSLKSLKLPFDGLYSLTYLYLTDCA-ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       130 ~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~-l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~  205 (463)
                      ++++|......+..+..+++|+.|++++|. +.++| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            888887554456667888888999998887 77776 5788888999999998888877 67888888888888874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=2.5e-17  Score=149.79  Aligned_cols=153  Identities=20%  Similarity=0.264  Sum_probs=130.7

Q ss_pred             cCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEE
Q 012450           28 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC  107 (463)
Q Consensus        28 ~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  107 (463)
                      ..+++|+.|++++| .+..+|.+..+++|++|++++|.++.++ .+..+++|++|++++|......+..+..+++|+.|+
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            56789999999985 6778888888999999999999887665 588899999999999765555677889999999999


Q ss_pred             EECCCCcc-CCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCccccccccccccccc
Q 012450          108 LTGSAIEE-LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       108 l~~~~i~~-lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~  184 (463)
                      +++|.++. .|..+..+++|++|++++|..++.++ .+..+++|+.|++++|.+.+++ .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            99999985 56778899999999999998677787 4889999999999999999987 7889999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=1.1e-18  Score=175.56  Aligned_cols=204  Identities=18%  Similarity=0.200  Sum_probs=161.7

Q ss_pred             CCCCCCcceeecccc--cCcC-CCCCcccc-------cCCcCccEEeeecCCCCC----CCCC-CCCCCCccEEEeeccC
Q 012450            1 MQHHGKLNQIIMAAC--NIFT-KTPNPSLI-------QHLNKLVILNLSGCSKLK----SLPE-ISSAGNIEKILLDGTA   65 (463)
Q Consensus         1 l~~~~~L~~L~L~~c--~~l~-~~~~~~~~-------~~l~~L~~L~L~~c~~l~----~lp~-l~~l~~L~~L~L~~~~   65 (463)
                      +.++++|++|+|++|  +.++ .+  |..+       ..+++|++|+|++|....    .+|. +..+++|++|+|++|.
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~--~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEI--PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGS--HHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHhCCCccEEeCcccccCccccch--hHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            457899999999996  2332 22  3333       689999999999975433    1454 7789999999999999


Q ss_pred             CCc-----cCccccCC---------CCccEEeeecCCCC-Cccc---hhcCCCCCCcEEEEECCCCc------cCCccCC
Q 012450           66 IEE-----LPSSIGCL---------SRLLELNLGDCKNL-KTLP---SSLCKLKSLEEICLTGSAIE------ELPSPIE  121 (463)
Q Consensus        66 i~~-----lp~~i~~l---------~~L~~L~l~~c~~l-~~lp---~~l~~l~~L~~L~l~~~~i~------~lp~~i~  121 (463)
                      ++.     ++..+..+         ++|++|++++|... ..++   ..+..+++|++|++++|.++      -++..+.
T Consensus       134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~  213 (386)
T 2ca6_A          134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  213 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence            872     33344445         89999999998654 3444   46778999999999999998      2444788


Q ss_pred             CCCCccEEecCCCCCC----CcCcccCCCCCCccEEEeeCCCCCC-----ccccc--CCcccccccccccccccc-----
Q 012450          122 CLSALCVLDLGDCKSL----KSLKLPFDGLYSLTYLYLTDCAITE-----LPESL--GLLSSLEELYLERNNFER-----  185 (463)
Q Consensus       122 ~l~~L~~L~l~~c~~l----~~l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l--~~l~~L~~L~Ls~n~l~~-----  185 (463)
                      .+++|++|++++|..-    ..++..+..+++|+.|+|++|.+.+     ++..+  +.+++|+.|+|++|.++.     
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~  293 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  293 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence            9999999999998842    4567778889999999999999986     46666  449999999999999986     


Q ss_pred             cchhh-hCCCCccEeccccccc
Q 012450          186 IPESI-IRLSKLSSLLVSYCER  206 (463)
Q Consensus       186 lp~~l-~~l~~L~~L~L~~c~~  206 (463)
                      +|..+ .++++|+.|++++|+.
T Consensus       294 l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          294 LKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHhcCCCceEEEccCCcC
Confidence            88887 6689999999999953

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.3e-17  Score=157.23  Aligned_cols=167  Identities=23%  Similarity=0.296  Sum_probs=118.2

Q ss_pred             CCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEE
Q 012450           29 HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL  108 (463)
Q Consensus        29 ~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  108 (463)
                      .+.++..+++++ ..++.++.+..+++|++|++++|.++.++ .+..+++|+.|++++| .+..++. +..+++|+.|++
T Consensus        17 ~l~~l~~l~l~~-~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGK-QSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTC-SCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcC-CCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence            345556666665 34555555666777777777777777766 4667777777777775 3455555 777777777777


Q ss_pred             ECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccch
Q 012450          109 TGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE  188 (463)
Q Consensus       109 ~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~  188 (463)
                      ++|.++.+|....  ++|++|++++|. ++.++. +..+++|+.|++++|.+++++ .+..+++|+.|++++|+++.+ .
T Consensus        93 ~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~  166 (263)
T 1xeu_A           93 NRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G  166 (263)
T ss_dssp             CSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred             CCCccCCcCcccc--CcccEEEccCCc-cCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H
Confidence            7777777765433  777888887775 555553 777788888888888887775 577788888888888888776 4


Q ss_pred             hhhCCCCccEecccccc
Q 012450          189 SIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       189 ~l~~l~~L~~L~L~~c~  205 (463)
                      .+..+++|+.|++++|+
T Consensus       167 ~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TSTTCCCCCEEEEEEEE
T ss_pred             HhccCCCCCEEeCCCCc
Confidence            67778888888888774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=1.9e-16  Score=168.07  Aligned_cols=173  Identities=27%  Similarity=0.374  Sum_probs=151.3

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .+++|+.|++++| .+..+   +.+..+++|+.|+|++| .+..++.+..+++|+.|+|++|.++.++ .+..+++|+.|
T Consensus        41 ~L~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTC-CCCCC---TTGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred             cCCCCCEEECcCC-CCCCC---hHHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence            4678999999985 56776   36889999999999996 5677777999999999999999999887 58999999999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  162 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~  162 (463)
                      +|++|. +..++ .+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|. +..++. +..+++|+.|+|++|.+.+
T Consensus       115 ~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          115 SLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             ECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred             EecCCC-CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCCCC
Confidence            999975 55554 588999999999999999988 678899999999999987 555555 8899999999999999999


Q ss_pred             cccccCCcccccccccccccccccc
Q 012450          163 LPESLGLLSSLEELYLERNNFERIP  187 (463)
Q Consensus       163 ~p~~l~~l~~L~~L~Ls~n~l~~lp  187 (463)
                      ++ .+..+++|+.|+|++|++...|
T Consensus       190 l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          190 LR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             Ch-HHccCCCCCEEEccCCcCcCCc
Confidence            85 5889999999999999987665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4e-17  Score=155.50  Aligned_cols=170  Identities=21%  Similarity=0.229  Sum_probs=147.0

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   84 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l   84 (463)
                      .++..+++++ +.++++  + .+..+++|+.|++++| .++.++.+..+++|++|++++|.++.++. +..+++|++|++
T Consensus        19 ~~l~~l~l~~-~~i~~~--~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGK-QSVTDL--V-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTC-SCTTSE--E-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHhcC-CCcccc--c-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence            4566677777 556666  3 6788999999999996 78888888999999999999999999888 899999999999


Q ss_pred             ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450           85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP  164 (463)
Q Consensus        85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p  164 (463)
                      ++| .++.+|... . ++|+.|++++|.++.++ .+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+.++ 
T Consensus        93 ~~N-~l~~l~~~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           93 NRN-RLKNLNGIP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             CSS-CCSCCTTCC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCC-ccCCcCccc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-
Confidence            997 466676533 3 99999999999999986 58899999999999987 66676 488999999999999999998 


Q ss_pred             cccCCcccccccccccccccccc
Q 012450          165 ESLGLLSSLEELYLERNNFERIP  187 (463)
Q Consensus       165 ~~l~~l~~L~~L~Ls~n~l~~lp  187 (463)
                      ..+..+++|+.|++++|.++..|
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             HHhccCCCCCEEeCCCCcccCCc
Confidence            67889999999999999987665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=1.5e-15  Score=138.97  Aligned_cols=173  Identities=27%  Similarity=0.355  Sum_probs=109.1

Q ss_pred             ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccEEee
Q 012450            8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNL   84 (463)
Q Consensus         8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l   84 (463)
                      +.++.++ ..++++  |..+  .++|++|++++| .++.++.  +..+++|++|++++|.++.++.. +..+++|++|++
T Consensus        10 ~~v~c~~-~~l~~~--p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A           10 TTVECYS-QGRTSV--PTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TEEECCS-SCCSSC--CSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEecC-CCccCC--CCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            4455555 445555  3333  457777777775 4455554  56777777777777777766654 466777777777


Q ss_pred             ecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCC
Q 012450           85 GDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAIT  161 (463)
Q Consensus        85 ~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~  161 (463)
                      ++|. +..+| ..+..+++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|++++|.+.
T Consensus        84 s~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           84 STNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence            7764 33444 3356777777777777777766554 5667777777777765 333333 3566677777777776443


Q ss_pred             CcccccCCccccccccccccccc-ccchhhhCCC
Q 012450          162 ELPESLGLLSSLEELYLERNNFE-RIPESIIRLS  194 (463)
Q Consensus       162 ~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~  194 (463)
                            +.+++|+.|+++.|+++ .+|..++.++
T Consensus       162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence                  34556777777777665 5665555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=1.1e-15  Score=160.86  Aligned_cols=171  Identities=25%  Similarity=0.269  Sum_probs=139.0

Q ss_pred             CccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450           32 KLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG  110 (463)
Q Consensus        32 ~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  110 (463)
                      +|+.|++++| .++.+|. +  .++|++|++++|.|+.+|   ..+++|++|++++| .++.+|. +.+  +|+.|++++
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            8999999996 5777887 5  388999999999999999   46899999999997 4566887 655  999999999


Q ss_pred             CCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhh
Q 012450          111 SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI  190 (463)
Q Consensus       111 ~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l  190 (463)
                      |.++.+|.   .+++|+.|++++|. ++.+|.   .+++|+.|+|++|.++.+|. +.  ++|+.|+|++|+++.+|. +
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~  198 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V  198 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C
T ss_pred             CcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H
Confidence            99999987   68999999999987 566775   67899999999999999888 55  899999999999999987 5


Q ss_pred             hCCCCc-------cEeccccccccccCCCC---CCCccEeeccCcc
Q 012450          191 IRLSKL-------SSLLVSYCERLQSLPKL---PCNLYWLDAQHCT  226 (463)
Q Consensus       191 ~~l~~L-------~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~  226 (463)
                      ..  +|       +.|++++| .++.+|..   .++|+.|++++++
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             C----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             HH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence            44  67       99999998 45566641   2456666666653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=2e-15  Score=138.15  Aligned_cols=170  Identities=24%  Similarity=0.340  Sum_probs=130.5

Q ss_pred             cEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc-ccCCCCccEEeeecCCCCCccch-hcCCCCCCcEEEEECC
Q 012450           34 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGS  111 (463)
Q Consensus        34 ~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~  111 (463)
                      +.++.++ ..++.+|. ...++|++|++++|.++.++.. +..+++|++|++++|. ++.+|. .+..+++|++|++++|
T Consensus        10 ~~v~c~~-~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYS-QGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCS-SCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecC-CCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC
Confidence            4566665 45666765 2356899999999999887765 6788999999999864 455554 4678999999999999


Q ss_pred             CCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCCCcccc-cCCcccccccccccccccccch
Q 012450          112 AIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPE  188 (463)
Q Consensus       112 ~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~  188 (463)
                      .++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|++++|.+++++.. +..+++|+.|++++|.+.    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence            99888765 5788999999999886 444444 467888999999999988886654 678889999999998664    


Q ss_pred             hhhCCCCccEeccccccccccCCCC
Q 012450          189 SIIRLSKLSSLLVSYCERLQSLPKL  213 (463)
Q Consensus       189 ~l~~l~~L~~L~L~~c~~l~~l~~l  213 (463)
                        ..+++|+.|+++.|..-..+|..
T Consensus       162 --~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 --CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             --CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             --cCCCCHHHHHHHHHhCCceeecc
Confidence              34567888888888766666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=1.3e-15  Score=141.99  Aligned_cols=144  Identities=29%  Similarity=0.394  Sum_probs=74.1

Q ss_pred             EEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCC
Q 012450           58 KILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKS  136 (463)
Q Consensus        58 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~  136 (463)
                      .++.+++.++.+|..+.  ++|++|++++|......|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|. 
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-   99 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-   99 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-
Confidence            34444444444444332  4455555555433333344445555555555555555554432 3455555555555543 


Q ss_pred             CCcCcc-cCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccch-hhhCCCCccEeccccc
Q 012450          137 LKSLKL-PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYC  204 (463)
Q Consensus       137 l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c  204 (463)
                      ++.++. .+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            333322 2445556666666666666666555666666666666666655542 3455566666666555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=5e-19  Score=186.66  Aligned_cols=186  Identities=19%  Similarity=0.202  Sum_probs=95.4

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeec-cCCCccCccccCCCCccE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDG-TAIEELPSSIGCLSRLLE   81 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~-~~i~~lp~~i~~l~~L~~   81 (463)
                      .+++|+.|+|++ +.++.+  |..++++++|+.|++++|..+..+|.+          +.. +.....|..++.+++|+.
T Consensus       347 ~~~~L~~L~Ls~-n~L~~L--p~~i~~l~~L~~L~l~~n~~l~~l~~l----------l~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          347 TDEQLFRCELSV-EKSTVL--QSELESCKELQELEPENKWCLLTIILL----------MRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             TTTTSSSCCCCH-HHHHHH--HHHHHHHHHHHHHCTTCHHHHHHHHHH----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred             cCccceeccCCh-hhHHhh--HHHHHHHHHHHHhccccchhhhhHHHH----------HHhcccccCCHHHHHHHHhccc
Confidence            456777777777 456666  677777777777777554211110000          000 011122333444444444


Q ss_pred             Ee-eecCCCCCccch------hcCC--CCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccE
Q 012450           82 LN-LGDCKNLKTLPS------SLCK--LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY  152 (463)
Q Consensus        82 L~-l~~c~~l~~lp~------~l~~--l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~  152 (463)
                      |+ ++.+ .+..++.      .+..  ...|+.|++++|.++.+|. ++.+++|+.|++++|. ++.+|..+.++++|+.
T Consensus       414 L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~  490 (567)
T 1dce_A          414 VDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEV  490 (567)
T ss_dssp             HCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCE
T ss_pred             Ccchhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCE
Confidence            44 2221 1111110      0000  1135556666666665554 5556666666666554 3455555566666666


Q ss_pred             EEeeCCCCCCcccccCCccccccccccccccccc--chhhhCCCCccEecccccc
Q 012450          153 LYLTDCAITELPESLGLLSSLEELYLERNNFERI--PESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       153 L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~c~  205 (463)
                      |+|++|.++++| .++.+++|+.|+|++|+++.+  |..+..+++|+.|++++|+
T Consensus       491 L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          491 LQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             EECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             EECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            666666666655 555666666666666666555  5556666666666666653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.64  E-value=1.3e-15  Score=151.69  Aligned_cols=168  Identities=23%  Similarity=0.295  Sum_probs=108.6

Q ss_pred             cEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc-cc-CCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEEC
Q 012450           34 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IG-CLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG  110 (463)
Q Consensus        34 ~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~  110 (463)
                      +.+++++ +.++.+|. .-.+.++.|+|++|.|+.++.. +. .+++|+.|++++|. +..++ ..+.++++|+.|++++
T Consensus        21 ~~l~c~~-~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCS-SCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCC-CCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence            4667666 45666765 1134577777777777766654 33 67777777777754 34443 4577777777777777


Q ss_pred             CCCccCCc-cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCccccc----CCcccccccccccccccc
Q 012450          111 SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL----GLLSSLEELYLERNNFER  185 (463)
Q Consensus       111 ~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l----~~l~~L~~L~Ls~n~l~~  185 (463)
                      |.++.++. .+..+++|++|++++|......+..+.++++|+.|+|++|.+..+|..+    ..+++|+.|+|++|+++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            77776654 4667777777777776644334555677777777777777777766554    457777777777777776


Q ss_pred             cc-hhhhCCCC--ccEeccccc
Q 012450          186 IP-ESIIRLSK--LSSLLVSYC  204 (463)
Q Consensus       186 lp-~~l~~l~~--L~~L~L~~c  204 (463)
                      +| ..+..++.  |+.|++++|
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSS
T ss_pred             cCHHHhhhccHhhcceEEecCC
Confidence            66 34445554  255555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=2.8e-17  Score=163.88  Aligned_cols=198  Identities=17%  Similarity=0.151  Sum_probs=110.9

Q ss_pred             CCcceeecccccCcCCCCCc----ccccCCc-CccEEeeecCCCCCCC-CC-CCCC-----CCccEEEeeccCCCccCcc
Q 012450            5 GKLNQIIMAACNIFTKTPNP----SLIQHLN-KLVILNLSGCSKLKSL-PE-ISSA-----GNIEKILLDGTAIEELPSS   72 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~----~~~~~l~-~L~~L~L~~c~~l~~l-p~-l~~l-----~~L~~L~L~~~~i~~lp~~   72 (463)
                      ++|++|+|++|. +++.. +    ..+..++ +|++|+|++| .++.. +. +..+     ++|++|++++|.++..+..
T Consensus        22 ~~L~~L~Ls~n~-l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           22 HGVTSLDLSLNN-LYSIS-TVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TTCCEEECTTSC-GGGSC-HHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCceEEEccCCC-CChHH-HHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            447777777744 44442 2    4555666 6777777775 33333 22 3322     6777777777776644322


Q ss_pred             -----ccCC-CCccEEeeecCCCCCccchh----cCC-CCCCcEEEEECCCCc-----cCCccCCCCC-CccEEecCCCC
Q 012450           73 -----IGCL-SRLLELNLGDCKNLKTLPSS----LCK-LKSLEEICLTGSAIE-----ELPSPIECLS-ALCVLDLGDCK  135 (463)
Q Consensus        73 -----i~~l-~~L~~L~l~~c~~l~~lp~~----l~~-l~~L~~L~l~~~~i~-----~lp~~i~~l~-~L~~L~l~~c~  135 (463)
                           +..+ ++|++|++++|......+..    +.. .++|++|++++|.++     .++..+..++ +|++|++++|.
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence                 3344 67777777776532222222    333 247777777777666     2333334444 67777777765


Q ss_pred             CCCcCcc----cCCCC-CCccEEEeeCCCCCC-----cccccCC-cccccccccccccccccc-----hhhhCCCCccEe
Q 012450          136 SLKSLKL----PFDGL-YSLTYLYLTDCAITE-----LPESLGL-LSSLEELYLERNNFERIP-----ESIIRLSKLSSL  199 (463)
Q Consensus       136 ~l~~l~~----~l~~l-~~L~~L~L~~~~l~~-----~p~~l~~-l~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L  199 (463)
                      .-...+.    .+... ++|+.|+|++|.+.+     ++..+.. .++|++|+|++|.++..+     ..+..+++|+.|
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence            2222211    22333 467777777777665     4444444 346777777777765432     234556677777


Q ss_pred             cccccc
Q 012450          200 LVSYCE  205 (463)
Q Consensus       200 ~L~~c~  205 (463)
                      ++++|.
T Consensus       259 ~L~~n~  264 (362)
T 3goz_A          259 YLDYDI  264 (362)
T ss_dssp             EEEHHH
T ss_pred             EeccCC
Confidence            777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=4.5e-15  Score=137.38  Aligned_cols=148  Identities=25%  Similarity=0.378  Sum_probs=98.4

Q ss_pred             cEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCc-cccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECC
Q 012450           34 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS  111 (463)
Q Consensus        34 ~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  111 (463)
                      +.+++++ ..++.+|. +.  ++|+.|++++|.|+.++. .+..+++|+.|++++|......|..+.++++|+.|++++|
T Consensus        14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTT-SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCC-CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            4566665 45666665 33  577777777777776665 4677777777777776544444666777777777777777


Q ss_pred             CCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCccc-ccCCccccccccccccccc
Q 012450          112 AIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       112 ~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~  184 (463)
                      .++.+|.. +..+++|++|++++|......+..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            77777654 4567777777777766433334556667777777777777776543 3566677777777776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=4.4e-15  Score=137.46  Aligned_cols=145  Identities=26%  Similarity=0.407  Sum_probs=121.8

Q ss_pred             cEEEeeccCCCccCccccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCC
Q 012450           57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDC  134 (463)
Q Consensus        57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c  134 (463)
                      +.++++++.++++|..+.  ++|+.|++++|. +..++ ..+..+++|+.|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            578889999999998764  789999999975 45554 4688999999999999999977 678899999999999998


Q ss_pred             CCCCcCccc-CCCCCCccEEEeeCCCCCCc-ccccCCcccccccccccccccccch-hhhCCCCccEecccccc
Q 012450          135 KSLKSLKLP-FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       135 ~~l~~l~~~-l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~  205 (463)
                      . ++.+|.. +.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|+
T Consensus        91 ~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           91 K-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             c-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            7 5556554 67899999999999999985 5678889999999999999988775 47788889999988874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=4.9e-15  Score=137.13  Aligned_cols=146  Identities=26%  Similarity=0.335  Sum_probs=87.5

Q ss_pred             cEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCc--cccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEE
Q 012450           34 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS--SIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLT  109 (463)
Q Consensus        34 ~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~  109 (463)
                      +.+++++ +.++.+|. +  ...+++|++++|.++.++.  .+..+++|++|++++|. ++.++ ..+.++++|++|+++
T Consensus        14 ~~l~~s~-n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSN-QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCC-CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECC
Confidence            4666666 35566665 3  3345677777777776532  25666777777776654 33333 356666777777777


Q ss_pred             CCCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCc-ccccCCcccccccccccccc
Q 012450          110 GSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       110 ~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l  183 (463)
                      +|.++.++.. +..+++|++|++++|......|..+.++++|+.|+|++|.++.+ |..+..+++|+.|++++|.+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            7766665543 55666666666666653333344555666666666666666654 45555666666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=1e-14  Score=135.03  Aligned_cols=146  Identities=24%  Similarity=0.259  Sum_probs=97.6

Q ss_pred             cEEEeeccCCCccCccccCCCCccEEeeecCCCCCcc-c-hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCC
Q 012450           57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTL-P-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGD  133 (463)
Q Consensus        57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l-p-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~  133 (463)
                      +.++++++.++++|..+.  ..+++|++++|. +..+ + ..+..+++|+.|++++|.++.++. .+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            467777777777776543  345677777754 3444 2 235677777777777777776654 567777777777777


Q ss_pred             CCCCCcCcccCCCCCCccEEEeeCCCCCCc-ccccCCccccccccccccccccc-chhhhCCCCccEecccccc
Q 012450          134 CKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       134 c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~  205 (463)
                      |......+..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|++++|+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            664333344466777777777777777764 55666777777777777777665 5566777777777777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.59  E-value=3.2e-15  Score=158.92  Aligned_cols=220  Identities=20%  Similarity=0.203  Sum_probs=175.0

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCC--CCCC-CCCCCCccEEEeeccCCCccCccccCCCCc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK--SLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRL   79 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~--~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L   79 (463)
                      .++.|+.+++.++. ....   .....+++|+.|+++++....  ..+. ...+.+|+.|++..+.+..++..+..+++|
T Consensus       347 ~l~~L~~l~l~~n~-~~~~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L  422 (635)
T 4g8a_A          347 KLKSLKRLTFTSNK-GGNA---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQL  422 (635)
T ss_dssp             BCTTCCEEEEESCC-SCCB---CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTC
T ss_pred             cchhhhhccccccc-CCCC---cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccc
Confidence            46778888888743 3333   345578999999999864322  2232 557889999999999888888888899999


Q ss_pred             cEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCc-CcccCCCCCCccEEEee
Q 012450           80 LELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKS-LKLPFDGLYSLTYLYLT  156 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~-l~~~l~~l~~L~~L~L~  156 (463)
                      +.+++.++......+ ..+..+++++.++++.|.+..+ +..+..+++|+.|++++|..... .|..+..+++|+.|+|+
T Consensus       423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls  502 (635)
T 4g8a_A          423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  502 (635)
T ss_dssp             CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence            999999876655444 4567899999999999999865 45678899999999999975554 56678899999999999


Q ss_pred             CCCCCCc-ccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCCC----CCCCccEeeccCcc
Q 012450          157 DCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCT  226 (463)
Q Consensus       157 ~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c~  226 (463)
                      +|+++++ |..+..+++|++|+|++|+++.++ ..+..+++|+.|++++|......|.    ++++|+.|++++.+
T Consensus       503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            9999985 677899999999999999998875 5688999999999999964443333    45778888887753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=2.6e-14  Score=133.07  Aligned_cols=148  Identities=28%  Similarity=0.350  Sum_probs=106.4

Q ss_pred             ccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCcc-CccccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEEC
Q 012450           33 LVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG  110 (463)
Q Consensus        33 L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~  110 (463)
                      -+.++.++ ..++.+|. +..++|++|++++|.++.+ |..+..+++|++|++++|. +..+| ..+..+++|+.|++++
T Consensus        21 ~~~v~c~~-~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRS-KRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTT-SCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccC-CCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence            45566665 45667766 1137777888888777766 4456777788888887764 45554 3456778888888888


Q ss_pred             CCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCccc-ccCCccccccccccccccc
Q 012450          111 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       111 ~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~  184 (463)
                      |.++.++.. +..+++|++|++++|. ++.+|..+..+++|+.|+|++|.+..++. .+..+++|+.|++++|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            888777654 4677888888888766 55777777788888888888888887653 4677888888888888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.58  E-value=8.9e-15  Score=145.68  Aligned_cols=169  Identities=23%  Similarity=0.312  Sum_probs=138.6

Q ss_pred             ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CC-CCCCccEEEeeccCCCccCc-cccCCCCccEEe
Q 012450            8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--IS-SAGNIEKILLDGTAIEELPS-SIGCLSRLLELN   83 (463)
Q Consensus         8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~-~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~   83 (463)
                      +.+++++ +.++.+  |..+.  +.++.|+|++| .++.++.  +. .+++|++|+|++|.|+.++. .+..+++|++|+
T Consensus        21 ~~l~c~~-~~l~~i--P~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSK-QQLPNV--PQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCS-SCCSSC--CSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCC-CCcCcc--CccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            5788887 678888  55543  56999999996 5666665  55 89999999999999998875 589999999999


Q ss_pred             eecCCCCCccc-hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCcccC----CCCCCccEEEeeC
Q 012450           84 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPF----DGLYSLTYLYLTD  157 (463)
Q Consensus        84 l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~l----~~l~~L~~L~L~~  157 (463)
                      +++|. +..++ ..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. ++.+|...    ..+++|+.|+|++
T Consensus        95 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           95 LSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             CCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS
T ss_pred             CCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC
Confidence            99975 55554 4688999999999999999987 5678999999999999987 66676643    5789999999999


Q ss_pred             CCCCCcc-cccCCccc--cccccccccccc
Q 012450          158 CAITELP-ESLGLLSS--LEELYLERNNFE  184 (463)
Q Consensus       158 ~~l~~~p-~~l~~l~~--L~~L~Ls~n~l~  184 (463)
                      |.+..+| ..+..++.  |+.|+|++|.+.
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            9999976 35666776  489999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=4.3e-15  Score=131.20  Aligned_cols=126  Identities=22%  Similarity=0.231  Sum_probs=61.1

Q ss_pred             CCccEEEeeccCCC--ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEec
Q 012450           54 GNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL  131 (463)
Q Consensus        54 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  131 (463)
                      ++|++|++++|.++  .+|..+..+++|++|++++|. +..+ ..+..+++|+.|++++|.++.                
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~----------------   85 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFG----------------   85 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCS----------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCch----------------
Confidence            44455555555444  444444445555555555543 2333 334444455555555544443                


Q ss_pred             CCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc--cccCCcccccccccccccccccch----hhhCCCCccEeccccc
Q 012450          132 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLVSYC  204 (463)
Q Consensus       132 ~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~c  204 (463)
                             .+|..+..+++|+.|++++|.++++|  ..+..+++|+.|++++|.++.+|.    .+..+++|+.|++++|
T Consensus        86 -------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           86 -------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             -------CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             -------HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence                   23332333444555555555554433  344555555555555555554443    4555555555555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=3.1e-17  Score=168.33  Aligned_cols=218  Identities=17%  Similarity=0.225  Sum_probs=118.5

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCC-----CCCC-CCCCCCccEEEeeccCCCcc-C-ccccCC
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK-----SLPE-ISSAGNIEKILLDGTAIEEL-P-SSIGCL   76 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~-----~lp~-l~~l~~L~~L~L~~~~i~~l-p-~~i~~l   76 (463)
                      ++|++|+|+++ .+++......+..+++|++|++++|. +.     .++. +..+++|++|++++|.++.. + .....+
T Consensus         3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            56677777663 34433212235566777777777764 33     2233 55567777777777766531 1 112233


Q ss_pred             C----CccEEeeecCCCCC----ccchhcCCCCCCcEEEEECCCCccC-----Ccc-CCCCCCccEEecCCCCCCCc---
Q 012450           77 S----RLLELNLGDCKNLK----TLPSSLCKLKSLEEICLTGSAIEEL-----PSP-IECLSALCVLDLGDCKSLKS---  139 (463)
Q Consensus        77 ~----~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~l-----p~~-i~~l~~L~~L~l~~c~~l~~---  139 (463)
                      +    +|++|++++|....    .++..+..+++|++|++++|.++..     ... ....++|++|++++|..-..   
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            3    57777777764331    3466666777777777777766521     111 22345677777776652221   


Q ss_pred             -CcccCCCCCCccEEEeeCCCCCCc-ccccC-----Ccccccccccccccccc-----cchhhhCCCCccEecccccccc
Q 012450          140 -LKLPFDGLYSLTYLYLTDCAITEL-PESLG-----LLSSLEELYLERNNFER-----IPESIIRLSKLSSLLVSYCERL  207 (463)
Q Consensus       140 -l~~~l~~l~~L~~L~L~~~~l~~~-p~~l~-----~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c~~l  207 (463)
                       ++..+..+++|+.|++++|.+.+. +..+.     ..++|++|++++|.++.     ++..+..+++|+.|++++|. +
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l  239 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-L  239 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-C
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-C
Confidence             233344556677777777666541 11111     24466677777666653     45556666667777776663 2


Q ss_pred             cc-----C----CCCCCCccEeeccCc
Q 012450          208 QS-----L----PKLPCNLYWLDAQHC  225 (463)
Q Consensus       208 ~~-----l----~~l~~~L~~L~i~~c  225 (463)
                      +.     +    ..-.++|+.|++++|
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            21     1    112345666666665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=1.2e-15  Score=165.46  Aligned_cols=189  Identities=17%  Similarity=0.158  Sum_probs=93.0

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeec----CCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCc
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSG----CSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRL   79 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~----c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L   79 (463)
                      +.++.|+|.+ +.+...  +..+....+|..+.+..    ++.+...+. +..+++|+.|+|++|.+..+|..+..+++|
T Consensus       173 ~~~~~l~L~~-n~~~~~--~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFA-NGKDEA--NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL  249 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred             CccceEEeeC-CCCCcc--hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence            3456666665 333333  33333333444443332    122333333 666777777777777777777777777777


Q ss_pred             cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450           80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA  159 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~  159 (463)
                      ++|+|++|. +..+|..++++++|+.|+|++|.++.+|..++.+++|++|+|++|. ++.+|..+..+++|+.|+|++|.
T Consensus       250 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence            777777753 4477777777777777777777777777777777777777777764 56677667777777777777777


Q ss_pred             CCC-cccccCCcc-ccccccccccccc-ccchhhhCCCCccEeccccc
Q 012450          160 ITE-LPESLGLLS-SLEELYLERNNFE-RIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       160 l~~-~p~~l~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c  204 (463)
                      ++. +|..+..+. .+..|+|++|.++ .+|      ..|+.|+++++
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence            775 444443332 2234567777664 233      24555666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.2e-14  Score=128.26  Aligned_cols=130  Identities=24%  Similarity=0.243  Sum_probs=104.4

Q ss_pred             CCCCCcEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCcccccc
Q 012450           99 KLKSLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEE  175 (463)
Q Consensus        99 ~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~  175 (463)
                      ..++|+.|++++|.++  .+|..+..+++|++|++++|. ++.+ ..+..+++|+.|++++|.+.+ +|..+..+++|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3467778888888777  777777778888888888776 5555 558889999999999999998 7877778999999


Q ss_pred             cccccccccccc--hhhhCCCCccEeccccccccccCCC-------CCCCccEeeccCcccccccc
Q 012450          176 LYLERNNFERIP--ESIIRLSKLSSLLVSYCERLQSLPK-------LPCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       176 L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~l~~-------l~~~L~~L~i~~c~~L~~l~  232 (463)
                      |++++|.++.+|  ..+..+++|+.|++++|+ +..++.       ..++|+.|++.+|. ++.++
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~  163 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP  163 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence            999999999876  688999999999999995 445544       24689999998875 33343

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=1.2e-16  Score=163.94  Aligned_cols=220  Identities=20%  Similarity=0.252  Sum_probs=157.9

Q ss_pred             CCCcceeecccccCcCCCC---CcccccCCcCccEEeeecCCCCCCCCC--CC-----CCCCccEEEeeccCCCc-----
Q 012450            4 HGKLNQIIMAACNIFTKTP---NPSLIQHLNKLVILNLSGCSKLKSLPE--IS-----SAGNIEKILLDGTAIEE-----   68 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~---~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~-----~l~~L~~L~L~~~~i~~-----   68 (463)
                      .++|++|+|++|. ++...   .+..+..+++|+.|++++|. ++....  +.     ..++|++|++++|.++.     
T Consensus       141 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  218 (461)
T 1z7x_W          141 QCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  218 (461)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             CCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence            5689999999974 43321   03456678999999999975 433211  21     36699999999998885     


Q ss_pred             cCccccCCCCccEEeeecCCCCCcc------chhcCCCCCCcEEEEECCCCcc-----CCccCCCCCCccEEecCCCCCC
Q 012450           69 LPSSIGCLSRLLELNLGDCKNLKTL------PSSLCKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSL  137 (463)
Q Consensus        69 lp~~i~~l~~L~~L~l~~c~~l~~l------p~~l~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l  137 (463)
                      ++..+..+++|++|++++|. +...      +.....+++|++|++++|.++.     ++..+..+++|++|++++|..-
T Consensus       219 l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            57778889999999999974 3322      2223468999999999999886     6777778999999999998632


Q ss_pred             Cc----Cccc-CCCCCCccEEEeeCCCCCC-----cccccCCccccccccccccccccc-c----hhhhC-CCCccEecc
Q 012450          138 KS----LKLP-FDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFERI-P----ESIIR-LSKLSSLLV  201 (463)
Q Consensus       138 ~~----l~~~-l~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~l-p----~~l~~-l~~L~~L~L  201 (463)
                      ..    +... ....++|+.|++++|.+++     ++..+..+++|++|++++|.++.. +    ..+.. .++|+.|++
T Consensus       298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence            11    1111 1234689999999999876     466677889999999999988642 2    22322 679999999


Q ss_pred             ccccccc----cCCCC---CCCccEeeccCcc
Q 012450          202 SYCERLQ----SLPKL---PCNLYWLDAQHCT  226 (463)
Q Consensus       202 ~~c~~l~----~l~~l---~~~L~~L~i~~c~  226 (463)
                      ++|..-.    .++..   .++|++|+++++.
T Consensus       378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            9984221    34432   4689999998874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=1.1e-16  Score=168.64  Aligned_cols=172  Identities=22%  Similarity=0.210  Sum_probs=141.7

Q ss_pred             CCCCCccEEEeeccCCCccCccccCCCCccEEeeecCC-------------CCCccchhcCCCCCCcEEE-EECCC----
Q 012450           51 SSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK-------------NLKTLPSSLCKLKSLEEIC-LTGSA----  112 (463)
Q Consensus        51 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~-------------~l~~lp~~l~~l~~L~~L~-l~~~~----  112 (463)
                      ...++|+.|+|++|.++.+|..++++++|+.|++++|.             .....|..++.+++|+.|+ ++.+.    
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            56889999999999999999999999999999987653             3445667778888888888 45443    


Q ss_pred             ---------CccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccc
Q 012450          113 ---------IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       113 ---------i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l  183 (463)
                               ++.++.     ..|+.|++++|. ++.+|. +..+++|+.|+|++|.++.+|..++.+++|+.|+|++|++
T Consensus       426 ~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          426 RSKFLLENSVLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL  498 (567)
T ss_dssp             HHHHHHHHHHHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             hhhhhhcccccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC
Confidence                     333332     258999999986 677887 9999999999999999999999999999999999999999


Q ss_pred             cccchhhhCCCCccEeccccccccccC--CC---CCCCccEeeccCcccccccc
Q 012450          184 ERIPESIIRLSKLSSLLVSYCERLQSL--PK---LPCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       184 ~~lp~~l~~l~~L~~L~L~~c~~l~~l--~~---l~~~L~~L~i~~c~~L~~l~  232 (463)
                      +.+| .+..+++|+.|+|++|. ++.+  |.   -.++|+.|+++++. ++.++
T Consensus       499 ~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          499 ENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             CCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             CCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence            9999 89999999999999984 4554  43   24689999998864 55444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.54  E-value=9.6e-16  Score=152.72  Aligned_cols=214  Identities=13%  Similarity=0.056  Sum_probs=154.6

Q ss_pred             eeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-----C-CCCCC-CccEEEeeccCCCcc-CccccCC----
Q 012450            9 QIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-----E-ISSAG-NIEKILLDGTAIEEL-PSSIGCL----   76 (463)
Q Consensus         9 ~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-----~-l~~l~-~L~~L~L~~~~i~~l-p~~i~~l----   76 (463)
                      .++++++..-..+  +..+...++|++|+|++|. ++..+     . +..++ +|++|++++|.++.. +..+..+    
T Consensus         2 ~~~ls~n~~~~~~--~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            2 NYKLTLHPGSNPV--EEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EEECCCCTTCCHH--HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             ccccccccchHHH--HHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            3566764433344  5566666779999999975 66554     3 66777 999999999999855 3334443    


Q ss_pred             -CCccEEeeecCCCCCccchh----cCCC-CCCcEEEEECCCCccCCc-----cCCC-CCCccEEecCCCCCCC----cC
Q 012450           77 -SRLLELNLGDCKNLKTLPSS----LCKL-KSLEEICLTGSAIEELPS-----PIEC-LSALCVLDLGDCKSLK----SL  140 (463)
Q Consensus        77 -~~L~~L~l~~c~~l~~lp~~----l~~l-~~L~~L~l~~~~i~~lp~-----~i~~-l~~L~~L~l~~c~~l~----~l  140 (463)
                       ++|++|++++|......+..    +..+ ++|++|++++|.++..+.     .+.. .++|++|++++|..-.    .+
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             99999999998754444443    4445 899999999999987654     2344 3699999999987332    23


Q ss_pred             cccCCCCC-CccEEEeeCCCCCCcc-----cccCCc-ccccccccccccccc-----cchhhhC-CCCccEecccccccc
Q 012450          141 KLPFDGLY-SLTYLYLTDCAITELP-----ESLGLL-SSLEELYLERNNFER-----IPESIIR-LSKLSSLLVSYCERL  207 (463)
Q Consensus       141 ~~~l~~l~-~L~~L~L~~~~l~~~p-----~~l~~l-~~L~~L~Ls~n~l~~-----lp~~l~~-l~~L~~L~L~~c~~l  207 (463)
                      +..+..++ +|+.|+|++|.+++..     ..+..+ ++|++|+|++|.++.     ++..+.. .++|+.|++++|. +
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l  237 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-L  237 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-C
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-C
Confidence            33344555 9999999999998632     234455 599999999999976     7777776 4599999999985 3


Q ss_pred             ccCC--------CCCCCccEeeccCcc
Q 012450          208 QSLP--------KLPCNLYWLDAQHCT  226 (463)
Q Consensus       208 ~~l~--------~l~~~L~~L~i~~c~  226 (463)
                      +..+        .-.++|+.|++++|.
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            3322        234679999998885

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.9e-14  Score=124.44  Aligned_cols=126  Identities=22%  Similarity=0.218  Sum_probs=86.6

Q ss_pred             CCccEEeeecCCCC-CccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEe
Q 012450           77 SRLLELNLGDCKNL-KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL  155 (463)
Q Consensus        77 ~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L  155 (463)
                      ++|+.|++++|... ..+|..+..+++|+.|++++|.++.+ ..++.+++|++|++++|.....+|..+..+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            55666666665432 25555556666666666666666665 55666777777777776644336655556778888888


Q ss_pred             eCCCCCCcc--cccCCcccccccccccccccccch----hhhCCCCccEecccc
Q 012450          156 TDCAITELP--ESLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLVSY  203 (463)
Q Consensus       156 ~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~  203 (463)
                      ++|.+++++  ..+..+++|++|++++|.++.+|.    .+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888887754  677888888888888888877664    577788888888763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.50  E-value=7.5e-16  Score=163.07  Aligned_cols=173  Identities=17%  Similarity=0.071  Sum_probs=93.7

Q ss_pred             CCCCccEEEeeccCCCc-----cCccccCCCCccEEeeecCCCC----CccchhcCCCCCCcEEEEECCCCccCCccCCC
Q 012450           52 SAGNIEKILLDGTAIEE-----LPSSIGCLSRLLELNLGDCKNL----KTLPSSLCKLKSLEEICLTGSAIEELPSPIEC  122 (463)
Q Consensus        52 ~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~  122 (463)
                      .+++|++|+|++|.++.     ++.....+++|+.|++++|...    ..++..+.++++|+.|++++|.+..+|..+..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            34555555555554331     1222334455555555554322    12333344556666666666666555555555


Q ss_pred             CCCccEEecCCCCCC---CcCcccCCCCCCccEEEeeCCCCCCcccccCCccccccccccccccc--ccchhhhCCCCcc
Q 012450          123 LSALCVLDLGDCKSL---KSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE--RIPESIIRLSKLS  197 (463)
Q Consensus       123 l~~L~~L~l~~c~~l---~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~  197 (463)
                      +++|++|+++.+...   ...+..+..+++|+.|+++++....+|..+..+++|++|++++|.++  .++..+..+++|+
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            666666666543221   12223355566677777766655556666777777778887777754  2334456777777


Q ss_pred             EeccccccccccCC---CCCCCccEeeccC
Q 012450          198 SLLVSYCERLQSLP---KLPCNLYWLDAQH  224 (463)
Q Consensus       198 ~L~L~~c~~l~~l~---~l~~~L~~L~i~~  224 (463)
                      .|+++++..-..++   ...++|+.|++.+
T Consensus       322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          322 VLETRNVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             EEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             EEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence            77777442222222   1235577777774

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1.3e-13  Score=122.83  Aligned_cols=102  Identities=23%  Similarity=0.273  Sum_probs=59.7

Q ss_pred             CCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccC-CCCCCccEEEeeCCCCCCccc--ccCCccccccccc
Q 012450          102 SLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF-DGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYL  178 (463)
Q Consensus       102 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~L~~L~L~~~~l~~~p~--~l~~l~~L~~L~L  178 (463)
                      +|+.|++++|.++.+ ..+..+++|++|++++|. ++.+|..+ ..+++|+.|++++|.+.++|.  .+..+++|+.|++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence            455555555554444 344455555555555544 33333322 556666666666666666655  5666677777777


Q ss_pred             ccccccccchh----hhCCCCccEecccccc
Q 012450          179 ERNNFERIPES----IIRLSKLSSLLVSYCE  205 (463)
Q Consensus       179 s~n~l~~lp~~----l~~l~~L~~L~L~~c~  205 (463)
                      ++|.++.+|..    +..+++|+.|++++|.
T Consensus       121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            77777666653    6667777777776663

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=3.1e-14  Score=154.51  Aligned_cols=190  Identities=21%  Similarity=0.232  Sum_probs=116.0

Q ss_pred             CcCccEEeeecCCCCCCCCC-CCCCCCccEEE-----eeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCC
Q 012450           30 LNKLVILNLSGCSKLKSLPE-ISSAGNIEKIL-----LDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSL  103 (463)
Q Consensus        30 l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~-----L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L  103 (463)
                      .+.++.|+|.++ .+...+. +-....|+.+.     +..+.+...+..+..+++|+.|+|++|. +..+|..+..+++|
T Consensus       172 ~~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L  249 (727)
T 4b8c_D          172 TPLTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSC
T ss_pred             CCccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCC
Confidence            356788888774 4444443 32333333333     3334455556678899999999999975 56888888899999


Q ss_pred             cEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccc
Q 012450          104 EEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       104 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l  183 (463)
                      +.|+|++|.++.+|..++.+++|++|+|++|. ++.+|..+.++++|+.|+|++|.+..+|..++.+++|+.|+|++|.+
T Consensus       250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            99999999999999999999999999999988 66889889999999999999999999999999999999999999999


Q ss_pred             cc-cchhhhCCC-CccEeccccccccccCCCCCCCccEeeccCc
Q 012450          184 ER-IPESIIRLS-KLSSLLVSYCERLQSLPKLPCNLYWLDAQHC  225 (463)
Q Consensus       184 ~~-lp~~l~~l~-~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c  225 (463)
                      +. +|..+..+. .+..|++++|..-..   +|..++.|++.+.
T Consensus       329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~---~p~~l~~l~l~~n  369 (727)
T 4b8c_D          329 EKQFLKILTEKSVTGLIFYLRDNRPEIP---LPHERRFIEINTD  369 (727)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCC---------
T ss_pred             CCCChHHHhhcchhhhHHhhccCcccCc---CccccceeEeecc
Confidence            74 555554432 223467888755433   4557777777655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=5.1e-14  Score=121.66  Aligned_cols=122  Identities=25%  Similarity=0.333  Sum_probs=61.2

Q ss_pred             CccEEEeeccCCC--ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCcc-CCccCCCCCCccEEec
Q 012450           55 NIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLDL  131 (463)
Q Consensus        55 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l  131 (463)
                      +|+.|++++|.++  .+|..+..+++|++|++++|. +..+ ..+..+++|+.|++++|.++. +|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3344444444443  344434444444444444432 2222 334444444444554444444 3333334555555555


Q ss_pred             CCCCCCCcCc--ccCCCCCCccEEEeeCCCCCCccc----ccCCcccccccccc
Q 012450          132 GDCKSLKSLK--LPFDGLYSLTYLYLTDCAITELPE----SLGLLSSLEELYLE  179 (463)
Q Consensus       132 ~~c~~l~~l~--~~l~~l~~L~~L~L~~~~l~~~p~----~l~~l~~L~~L~Ls  179 (463)
                      ++|. ++.++  ..+..+++|+.|++++|.++++|.    .+..+++|+.|+++
T Consensus        96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5544 33322  345666667777777776666554    56667777777765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.44  E-value=6.1e-15  Score=156.06  Aligned_cols=195  Identities=18%  Similarity=0.147  Sum_probs=119.7

Q ss_pred             cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCC----CCC-CCCCCCccEEEeeccCCC-----ccCccccCC
Q 012450            7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS----LPE-ISSAGNIEKILLDGTAIE-----ELPSSIGCL   76 (463)
Q Consensus         7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~----lp~-l~~l~~L~~L~L~~~~i~-----~lp~~i~~l   76 (463)
                      |++|+|++|..++....+....++++|++|+|++|.....    ++. ...+++|++|++++|.++     .++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            8888888876443221123344778888888888743221    122 345778888888887765     334445667


Q ss_pred             CCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc----cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccE
Q 012450           77 SRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE----ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY  152 (463)
Q Consensus        77 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~----~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~  152 (463)
                      ++|+.|++++|. +..+|..+.++++|+.|++++....    ..+..+..+++|+.|+++++. ...+|..+..+++|++
T Consensus       220 ~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          220 RSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRK  297 (592)
T ss_dssp             TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCE
T ss_pred             CCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcE
Confidence            888888888764 4456667777778888887643221    334455666777777776642 3445555666677777


Q ss_pred             EEeeCCCCCC--cccccCCcccccccccccccc-cccchhhhCCCCccEecccc
Q 012450          153 LYLTDCAITE--LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSY  203 (463)
Q Consensus       153 L~L~~~~l~~--~p~~l~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~  203 (463)
                      |++++|.+.+  ++..+..+++|++|+++++.. ..++.....+++|++|++++
T Consensus       298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence            7777777554  333456677777777763221 13444445566677777763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=9.6e-14  Score=123.61  Aligned_cols=129  Identities=19%  Similarity=0.290  Sum_probs=78.5

Q ss_pred             CCCccEEEeeccCCCccCccccCC-CCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccC-CCCCCccEEe
Q 012450           53 AGNIEKILLDGTAIEELPSSIGCL-SRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLD  130 (463)
Q Consensus        53 l~~L~~L~L~~~~i~~lp~~i~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~  130 (463)
                      +.+|+.|++++|.++.++. +..+ ++|++|++++|. +..+ ..+..+++|+.|++++|.++.+|+.+ ..+++|++|+
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            3444444444444444433 2222 255555555542 3333 34555566666666666666555443 5566666666


Q ss_pred             cCCCCCCCcCcc--cCCCCCCccEEEeeCCCCCCcccc----cCCcccccccccccccccc
Q 012450          131 LGDCKSLKSLKL--PFDGLYSLTYLYLTDCAITELPES----LGLLSSLEELYLERNNFER  185 (463)
Q Consensus       131 l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~l~~~p~~----l~~l~~L~~L~Ls~n~l~~  185 (463)
                      +++|. ++.+|.  .+..+++|+.|++++|.+..+|..    +..+++|+.|++++|....
T Consensus        95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            66654 355554  566778888888888888877764    7888999999999887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=7.5e-13  Score=119.63  Aligned_cols=124  Identities=24%  Similarity=0.332  Sum_probs=59.2

Q ss_pred             cEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCcc--ccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450           34 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS--IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG  110 (463)
Q Consensus        34 ~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  110 (463)
                      +.+++++ +.++.+|. +.  .+|++|++++|.++.++..  ++.+++|++|++++|......|..+.++++|+.|++++
T Consensus        11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            4555555 24455554 22  2555555555555555432  45555555555555443333344555555555555555


Q ss_pred             CCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCC
Q 012450          111 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI  160 (463)
Q Consensus       111 ~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l  160 (463)
                      |.++.++.. +..+++|++|++++|......|..+..+++|+.|++++|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            555544332 34444444444444432222233344444444444444433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=9e-13  Score=119.09  Aligned_cols=125  Identities=30%  Similarity=0.377  Sum_probs=99.1

Q ss_pred             cEEEeeccCCCccCccccCCCCccEEeeecCCCCCccch--hcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCC
Q 012450           57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPS--SLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGD  133 (463)
Q Consensus        57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~  133 (463)
                      +.++++++.++++|..+..  +|++|++++|. +..++.  .+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            6889999999999886643  89999999874 555553  378889999999999998877 66788888899999988


Q ss_pred             CCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCccccccccccccccc
Q 012450          134 CKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       134 c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~  184 (463)
                      |......+..+.++++|+.|+|++|.++. .|..+..+++|++|++++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            87444444457788888888888888887 4667788888888888888775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.41  E-value=7.1e-15  Score=155.53  Aligned_cols=198  Identities=20%  Similarity=0.251  Sum_probs=117.6

Q ss_pred             CCCCcceeecccccCcCCCCCccccc-CCcCccEEeeecCCCCCC--CCC-CCCCCCccEEEeeccCCCc-----cCccc
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIEE-----LPSSI   73 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~-~l~~L~~L~L~~c~~l~~--lp~-l~~l~~L~~L~L~~~~i~~-----lp~~i   73 (463)
                      .+++|++|+|++|. +++.. ...+. .+++|++|++++|..++.  ++. +..+++|++|++++|.++.     ++...
T Consensus       103 ~~~~L~~L~L~~~~-~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRMV-VTDDC-LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESCB-CCHHH-HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             hCCCCCeEEeeCcE-EcHHH-HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            46788888888865 33221 23333 578888888888765544  334 3467788888888776542     23333


Q ss_pred             cCCCCccEEeeecCC-CCC--ccchhcCCCCCCcEEEEECC-CCccCCccCCCCCCccEEecCCC---------------
Q 012450           74 GCLSRLLELNLGDCK-NLK--TLPSSLCKLKSLEEICLTGS-AIEELPSPIECLSALCVLDLGDC---------------  134 (463)
Q Consensus        74 ~~l~~L~~L~l~~c~-~l~--~lp~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~c---------------  134 (463)
                      ..+++|+.|++++|. .+.  .++..+.++++|+.|++++| .+..++..+..+++|++|+++.+               
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            466778888887765 111  12222345677888888776 34445555556666666664433               


Q ss_pred             ----CCCCc-----------CcccCCCCCCccEEEeeCCCCCC--cccccCCccccccccccccccc--ccchhhhCCCC
Q 012450          135 ----KSLKS-----------LKLPFDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFE--RIPESIIRLSK  195 (463)
Q Consensus       135 ----~~l~~-----------l~~~l~~l~~L~~L~L~~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~  195 (463)
                          +.++.           ++..+..+++|+.|++++|.+.+  +...+..+++|++|++++| ++  .++.....+++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence                22221           22222345778888888877654  4444567778888888777 32  23333445777


Q ss_pred             ccEecccc
Q 012450          196 LSSLLVSY  203 (463)
Q Consensus       196 L~~L~L~~  203 (463)
                      |+.|++.+
T Consensus       340 L~~L~L~~  347 (594)
T 2p1m_B          340 LRELRVFP  347 (594)
T ss_dssp             CCEEEEEC
T ss_pred             CCEEEEec
Confidence            77777733

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.40  E-value=2.2e-15  Score=159.38  Aligned_cols=221  Identities=18%  Similarity=0.112  Sum_probs=151.4

Q ss_pred             CCCCcceeecccccCcCCCCCc-------------ccccCCcCccEEeeecCCCCCCCCC-CC-CCCCccEEEeecc-CC
Q 012450            3 HHGKLNQIIMAACNIFTKTPNP-------------SLIQHLNKLVILNLSGCSKLKSLPE-IS-SAGNIEKILLDGT-AI   66 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~-------------~~~~~l~~L~~L~L~~c~~l~~lp~-l~-~l~~L~~L~L~~~-~i   66 (463)
                      .+++|++|++++|..+.+....             .....+++|+.|+|++|......+. +. .+++|++|++++| .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            5789999999999877654211             1234789999999999852222222 33 5899999999998 66


Q ss_pred             Cc--cCccccCCCCccEEeeecCCCCC----ccchhcCCCCCCcEEEEECCC--Cc--cCCccCCCCCCccEEecCCCCC
Q 012450           67 EE--LPSSIGCLSRLLELNLGDCKNLK----TLPSSLCKLKSLEEICLTGSA--IE--ELPSPIECLSALCVLDLGDCKS  136 (463)
Q Consensus        67 ~~--lp~~i~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~l~~c~~  136 (463)
                      +.  ++..+..+++|++|++++|....    .++.....+++|+.|++++|.  +.  .++..+..+++|++|++++|..
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            53  55556689999999999986322    233334578899999999986  22  2223345579999999999976


Q ss_pred             CCcCcccCCCCCCccEEEeeCCCC-------------------------------CCcccccCCcccccccccccccccc
Q 012450          137 LKSLKLPFDGLYSLTYLYLTDCAI-------------------------------TELPESLGLLSSLEELYLERNNFER  185 (463)
Q Consensus       137 l~~l~~~l~~l~~L~~L~L~~~~l-------------------------------~~~p~~l~~l~~L~~L~Ls~n~l~~  185 (463)
                      ++.++..+..+++|+.|+++.+..                               ..++..+..+++|++|++++|.++.
T Consensus       224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred             HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence            666666667778888887655421                               1133334467888888888888652


Q ss_pred             --cchhhhCCCCccEeccccccccccCC---CCCCCccEeecc
Q 012450          186 --IPESIIRLSKLSSLLVSYCERLQSLP---KLPCNLYWLDAQ  223 (463)
Q Consensus       186 --lp~~l~~l~~L~~L~L~~c~~l~~l~---~l~~~L~~L~i~  223 (463)
                        ++..+..+++|+.|++++|..-..++   ...++|+.|++.
T Consensus       304 ~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence              44456788889999988873211121   224567778773

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.39  E-value=1.8e-12  Score=117.22  Aligned_cols=123  Identities=27%  Similarity=0.333  Sum_probs=58.3

Q ss_pred             EEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCC
Q 012450           58 KILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKS  136 (463)
Q Consensus        58 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~  136 (463)
                      .++++++.++++|..+.  ++|++|++++| .+..+|..+.++++|+.|++++|.++.++. .+..+++|++|++++|..
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            34444444444444322  34444444443 233444444445555555555555544432 244444444444444442


Q ss_pred             CCcCcccCCCCCCccEEEeeCCCCCCccc-ccCCcccccccccccccc
Q 012450          137 LKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNF  183 (463)
Q Consensus       137 l~~l~~~l~~l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l  183 (463)
                      ....+..+.++++|+.|+|++|.++.+|. .+..+++|+.|++++|.+
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            22222234555555566666555555443 244555666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.36  E-value=6.9e-12  Score=111.48  Aligned_cols=124  Identities=30%  Similarity=0.484  Sum_probs=62.0

Q ss_pred             cEEEeeccCCCccCccccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCC
Q 012450           57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDC  134 (463)
Q Consensus        57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c  134 (463)
                      +.+++++++++.+|..+  .++|+.|++++|. +..+| ..+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            34445555555554332  2455555555543 22332 2344555555555555555555433 345555555555554


Q ss_pred             CCCCcCcc-cCCCCCCccEEEeeCCCCCCcccc-cCCccccccccccccccc
Q 012450          135 KSLKSLKL-PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFE  184 (463)
Q Consensus       135 ~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~~-l~~l~~L~~L~Ls~n~l~  184 (463)
                      . ++.++. .+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus        87 ~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 K-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             C-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            4 222222 244555666666666666555443 345566666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=6.4e-12  Score=113.64  Aligned_cols=124  Identities=19%  Similarity=0.338  Sum_probs=99.8

Q ss_pred             cEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCC
Q 012450           34 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSA  112 (463)
Q Consensus        34 ~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  112 (463)
                      +.+++++ +.++.+|. +  .++|++|++++|.++.+|..+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus        13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTT-SCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCC-CCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            5677777 46777776 3  368899999999999888888899999999999875444444668889999999999999


Q ss_pred             CccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCC
Q 012450          113 IEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAIT  161 (463)
Q Consensus       113 i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~  161 (463)
                      ++.++. .+..+++|++|++++|. ++.++. .+..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence            988865 58889999999999887 555554 4778899999999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=2.2e-14  Score=130.34  Aligned_cols=116  Identities=24%  Similarity=0.339  Sum_probs=59.9

Q ss_pred             CCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccC
Q 012450           65 AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF  144 (463)
Q Consensus        65 ~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l  144 (463)
                      .++++|..+..+++|++|++++|. +..+| .+..+++|+.|++++|.++.+|..+..+++|++|++++|. ++.+| .+
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~  111 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GI  111 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence            344444455555566666665542 33344 4555556666666665555555444444445555555443 33333 24


Q ss_pred             CCCCCccEEEeeCCCCCCccc--ccCCccccccccccccccc
Q 012450          145 DGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       145 ~~l~~L~~L~L~~~~l~~~p~--~l~~l~~L~~L~Ls~n~l~  184 (463)
                      ..+++|+.|++++|.+.+++.  .+..+++|++|++++|.++
T Consensus       112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            445555555555555555432  4555555555555555553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=7.9e-12  Score=122.58  Aligned_cols=77  Identities=13%  Similarity=0.167  Sum_probs=53.9

Q ss_pred             CCCcceeecccccCcC--------------------CCCCcccccC--------CcCccEEeeecCCCCCCCCC--CCCC
Q 012450            4 HGKLNQIIMAACNIFT--------------------KTPNPSLIQH--------LNKLVILNLSGCSKLKSLPE--ISSA   53 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~--------------------~~~~~~~~~~--------l~~L~~L~L~~c~~l~~lp~--l~~l   53 (463)
                      +++|+.|||+++. +.                    .++ ...+.+        +++|+.|+|.+  .++.++.  +..+
T Consensus        48 l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~-~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVP-AYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEEC-TTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTC
T ss_pred             hccCeEEecCcce-eEEecCccccccccccccccccccC-HHHhcccccccccccCCCcEEECCc--cccchhHHHhhcC
Confidence            6889999999955 33                    222 234556        88888888887  6777776  7888


Q ss_pred             CCccEEEeeccCCCccCcc-ccCCCCccEEee
Q 012450           54 GNIEKILLDGTAIEELPSS-IGCLSRLLELNL   84 (463)
Q Consensus        54 ~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l   84 (463)
                      ++|+.|+++++.+..++.. +..+.++..+.+
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPL  155 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecC
Confidence            8899999988887766554 555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.25  E-value=8.6e-11  Score=104.31  Aligned_cols=125  Identities=25%  Similarity=0.386  Sum_probs=84.1

Q ss_pred             cEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc-ccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECC
Q 012450           34 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGS  111 (463)
Q Consensus        34 ~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~  111 (463)
                      +.+++++ ..++.+|. ...++|++|++++|.++.++.. +..+++|++|++++|. +..+| ..+..+++|+.|++++|
T Consensus        10 ~~l~~~~-~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNS-KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCS-SCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecC-CCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC
Confidence            4566655 34555654 2235677777777777766654 4667777777777754 44444 33567778888888888


Q ss_pred             CCccCCcc-CCCCCCccEEecCCCCCCCcCccc-CCCCCCccEEEeeCCCCCC
Q 012450          112 AIEELPSP-IECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITE  162 (463)
Q Consensus       112 ~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~L~~~~l~~  162 (463)
                      .++.+|.. +..+++|++|++++|. ++.+|.. +..+++|+.|++++|.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence            77777654 5677888888888775 4455543 4678888888888887765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=4.2e-14  Score=128.42  Aligned_cols=128  Identities=23%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEE
Q 012450           50 ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL  129 (463)
Q Consensus        50 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L  129 (463)
                      +..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..+++|+.|++++|.++.+| .+..+++|++|
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred             HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence            444555555555555555554 45555555555555542 3344444444455555555555555544 34455555555


Q ss_pred             ecCCCCCCCcCcc--cCCCCCCccEEEeeCCCCCCc-cc----------ccCCcccccccccccccc
Q 012450          130 DLGDCKSLKSLKL--PFDGLYSLTYLYLTDCAITEL-PE----------SLGLLSSLEELYLERNNF  183 (463)
Q Consensus       130 ~l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~l~~~-p~----------~l~~l~~L~~L~Ls~n~l  183 (463)
                      ++++|. ++.++.  .+..+++|+.|++++|.+.+. |.          .+..+++|+.|+  ++.+
T Consensus       121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             ECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            555554 333322  355666677777777766542 21          256677777776  4444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=1.8e-10  Score=102.31  Aligned_cols=102  Identities=26%  Similarity=0.404  Sum_probs=53.5

Q ss_pred             cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCccc-CCCCCCccEEEeeC
Q 012450           80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTD  157 (463)
Q Consensus        80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~L~~  157 (463)
                      +.++++++ .++.+|..+.  ++|+.|++++|.++.+ |..+..+++|++|++++|. ++.+|.. +.++++|+.|+|++
T Consensus        15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence            45555553 3455555442  5566666666666555 3345555555555555553 3334332 34555555555555


Q ss_pred             CCCCCcccc-cCCcccccccccccccccc
Q 012450          158 CAITELPES-LGLLSSLEELYLERNNFER  185 (463)
Q Consensus       158 ~~l~~~p~~-l~~l~~L~~L~Ls~n~l~~  185 (463)
                      |.+..+|.. +..+++|+.|+|++|.+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            555554433 4455555555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=2.2e-10  Score=101.70  Aligned_cols=106  Identities=25%  Similarity=0.329  Sum_probs=70.5

Q ss_pred             cEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCC
Q 012450           57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCK  135 (463)
Q Consensus        57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~  135 (463)
                      +.++++++.++++|..+.  ++|++|++++|......|..+.++++|+.|++++|.++.+|.. +..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            456666666666666543  6677777776543333355666777777777777777777655 3677777777777765


Q ss_pred             CCCcCccc-CCCCCCccEEEeeCCCCCCccc
Q 012450          136 SLKSLKLP-FDGLYSLTYLYLTDCAITELPE  165 (463)
Q Consensus       136 ~l~~l~~~-l~~l~~L~~L~L~~~~l~~~p~  165 (463)
                       ++.+|.. +..+++|+.|+|++|.+...+.
T Consensus        93 -l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           93 -LKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             -CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             -cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence             4455543 6777888888888887765543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.11  E-value=3.1e-11  Score=118.34  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=52.4

Q ss_pred             CCCccEEEeeCCCCCCccc-ccCCcccccccccccccccccc-hhhhCCCCcc-EeccccccccccCCCC----CCCccE
Q 012450          147 LYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIP-ESIIRLSKLS-SLLVSYCERLQSLPKL----PCNLYW  219 (463)
Q Consensus       147 l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~-~L~L~~c~~l~~l~~l----~~~L~~  219 (463)
                      +++|+.|+|++|+++.+|. .+.++++|++|++.+| ++.++ ..+.++++|+ .+++.+  .++.|+.-    ..+|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence            6788888888888888664 4678888888888887 76666 4567788888 888876  46665531    234555


Q ss_pred             eec
Q 012450          220 LDA  222 (463)
Q Consensus       220 L~i  222 (463)
                      +++
T Consensus       302 l~l  304 (329)
T 3sb4_A          302 VLA  304 (329)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=1.9e-10  Score=101.60  Aligned_cols=102  Identities=26%  Similarity=0.421  Sum_probs=58.0

Q ss_pred             ccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEee
Q 012450           79 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLT  156 (463)
Q Consensus        79 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~  156 (463)
                      .+.++++++ .++.+|..+  .++|+.|++++|.++.+ |..+..+++|++|++++|. ++.++. .+.++++|+.|+|+
T Consensus        11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence            456666663 455566544  25666666666666655 3345566666666666654 333333 24556666666666


Q ss_pred             CCCCCCccc-ccCCccccccccccccccc
Q 012450          157 DCAITELPE-SLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       157 ~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~  184 (463)
                      +|.++.+|. .+..+++|+.|+|++|.++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            666665544 3555666666666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.09  E-value=6.7e-10  Score=98.06  Aligned_cols=105  Identities=27%  Similarity=0.339  Sum_probs=68.7

Q ss_pred             ccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCC
Q 012450           56 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDC  134 (463)
Q Consensus        56 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c  134 (463)
                      .+.++++++.++++|..+.  ++|++|++++|......|..+.++++|+.|++++|.++.+|.. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3566666666666666542  6677777776543333355566777777777777777766654 367777777777776


Q ss_pred             CCCCcCcc-cCCCCCCccEEEeeCCCCCCc
Q 012450          135 KSLKSLKL-PFDGLYSLTYLYLTDCAITEL  163 (463)
Q Consensus       135 ~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~  163 (463)
                      . ++.++. .+..+++|+.|+|++|.+...
T Consensus        89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             c-cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            5 444443 467778888888888876643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.93  E-value=1.9e-08  Score=101.19  Aligned_cols=206  Identities=13%  Similarity=0.123  Sum_probs=132.0

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   83 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   83 (463)
                      +|+.+.|..  .++.+. ...+.++ +|+.+.+..  .++.++.  +..+++|+.+++.+|.++.++.....+.+|+.+.
T Consensus       136 ~L~~i~l~~--~i~~I~-~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNE--GLKSIG-DMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL  209 (401)
T ss_dssp             CCSEEECCT--TCCEEC-TTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred             CccEEEeCC--CccEEC-HHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence            566666654  255553 2344443 577777764  5666665  7777888888888888887777655567788888


Q ss_pred             eecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCCCCC
Q 012450           84 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCAIT  161 (463)
Q Consensus        84 l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~~l~  161 (463)
                      +.+  .++.++ ..+.++++|+.+.+..+ ++.++.....-.+|+.+.+.+  .++.++ ..+.++++|+.+.+.++.+.
T Consensus       210 lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          210 LPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             CCT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             eCC--chheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcccc
Confidence            764  355554 34667788888888763 555554433336788887743  244443 34777888888888877654


Q ss_pred             -----Cc-ccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCCCC---CCCccEeeccCc
Q 012450          162 -----EL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC  225 (463)
Q Consensus       162 -----~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c  225 (463)
                           .+ +..+..|++|+.+.+.+ .++.++ ..+.+|++|+.+.|..+  ++.|+.-   -.+|+.+++.+.
T Consensus       285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n  355 (401)
T 4fdw_A          285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGT  355 (401)
T ss_dssp             CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCS
T ss_pred             CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCC
Confidence                 23 34567788888888874 466665 35667788888888553  5554431   125666666553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=1e-08  Score=100.83  Aligned_cols=82  Identities=18%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             eeecCCCCCCCCCCCCCCCccEEEeec-cCCCccCc-cccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc
Q 012450           37 NLSGCSKLKSLPEISSAGNIEKILLDG-TAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE  114 (463)
Q Consensus        37 ~L~~c~~l~~lp~l~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~  114 (463)
                      ++++++.++.+|.+..+++|++|+|++ |.|+.++. .+..+++|+.|+|++|......|..|.++++|+.|+|++|.++
T Consensus        14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence            444422444444444444455555543 45544442 2444555555555544322222233444555555555555444


Q ss_pred             cCCc
Q 012450          115 ELPS  118 (463)
Q Consensus       115 ~lp~  118 (463)
                      .+|.
T Consensus        94 ~~~~   97 (347)
T 2ifg_A           94 SLSW   97 (347)
T ss_dssp             CCCS
T ss_pred             eeCH
Confidence            4443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=6.9e-09  Score=102.10  Aligned_cols=102  Identities=21%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             EEEeecc-CCCccCccccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCC
Q 012450           58 KILLDGT-AIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDC  134 (463)
Q Consensus        58 ~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c  134 (463)
                      .++++++ .++.+|. +..+++|+.|+|++++.+..+| ..+.++++|+.|+|++|.++.+++ .+..+++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4566665 6777777 7777777777776533455554 456667777777777776665543 3455666666666655


Q ss_pred             CCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450          135 KSLKSLKLPFDGLYSLTYLYLTDCAIT  161 (463)
Q Consensus       135 ~~l~~l~~~l~~l~~L~~L~L~~~~l~  161 (463)
                      . ++.+|........|+.|+|.+|.+.
T Consensus        91 ~-l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 A-LESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             C-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             c-cceeCHHHcccCCceEEEeeCCCcc
Confidence            4 3444432222222555555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.82  E-value=7.3e-08  Score=96.95  Aligned_cols=188  Identities=16%  Similarity=0.203  Sum_probs=142.4

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCcc-ccCCCCccEEe
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELN   83 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~   83 (463)
                      +|+.+.|..  .++.+. ...+.+|++|+.+++.+ +.++.++. .....+|+.+.+..+ ++.++.. +..+++|+.+.
T Consensus       158 ~L~~i~lp~--~l~~I~-~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLK-EDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT--TCCEEC-SSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCC--CccEeh-HHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence            688888875  566664 46788999999999987 46788887 333689999999854 7777654 78899999999


Q ss_pred             eecCCCCCccchhcCCCCCCcEEEEECCCCccCC-ccCCCCCCccEEecCCCCCC----CcC-cccCCCCCCccEEEeeC
Q 012450           84 LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSL----KSL-KLPFDGLYSLTYLYLTD  157 (463)
Q Consensus        84 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l----~~l-~~~l~~l~~L~~L~L~~  157 (463)
                      +.+  +++.++.....-.+|+.+.+. +.++.++ ..+..+++|+.+.+.++...    ..+ +..+.++++|+.+.+.+
T Consensus       233 l~~--~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          233 IPE--NVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             CCT--TCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             cCC--CccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            986  366776543333789999995 4566664 46788999999999876432    122 34588999999999984


Q ss_pred             CCCCCcc-cccCCcccccccccccccccccc-hhhhCCCCccEeccccc
Q 012450          158 CAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       158 ~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c  204 (463)
                       .+..++ ..+.+|++|+.+.|..+ ++.+. ..+.++ +|+.+.+.++
T Consensus       310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred             -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence             466654 45778999999999654 66665 467778 9999999987

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.81  E-value=2e-10  Score=114.64  Aligned_cols=152  Identities=18%  Similarity=0.203  Sum_probs=90.8

Q ss_pred             CCCccEEEeeccCCCcc-----Ccccc-CCCCccEEeeecCCCCCccchh-cCCCCCCcEEEEECCCCccC-----CccC
Q 012450           53 AGNIEKILLDGTAIEEL-----PSSIG-CLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEEL-----PSPI  120 (463)
Q Consensus        53 l~~L~~L~L~~~~i~~l-----p~~i~-~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~l-----p~~i  120 (463)
                      +++|+.|++++|.++..     ...+. ..++|+.|++++|.....-... ...+++|+.|++++|.++..     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            45677777777776632     22222 2357777777776432211111 22345677777777776522     1112


Q ss_pred             -CCCCCccEEecCCCCCCCc-----CcccCCCCCCccEEEeeCCCCCC-----cccccCCccccccccccccccc-----
Q 012450          121 -ECLSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----  184 (463)
Q Consensus       121 -~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~-----  184 (463)
                       ...++|++|++++|. ++.     ++..+...++|++|+|++|.+.+     ++..+...++|++|+|++|.++     
T Consensus       151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             245677777777775 322     33334566778888888887765     3455666677888888888775     


Q ss_pred             ccchhhhCCCCccEecccccc
Q 012450          185 RIPESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       185 ~lp~~l~~l~~L~~L~L~~c~  205 (463)
                      .+...+...++|+.|+|++|.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHhCCCCCEEeccCCC
Confidence            244555667778888888774

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.80  E-value=9.1e-11  Score=117.09  Aligned_cols=154  Identities=18%  Similarity=0.173  Sum_probs=111.1

Q ss_pred             CcCccEEeeecCCCCCCCC-----C-CC-CCCCccEEEeeccCCCc--cCccccCCCCccEEeeecCCCCCcc----chh
Q 012450           30 LNKLVILNLSGCSKLKSLP-----E-IS-SAGNIEKILLDGTAIEE--LPSSIGCLSRLLELNLGDCKNLKTL----PSS   96 (463)
Q Consensus        30 l~~L~~L~L~~c~~l~~lp-----~-l~-~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~l----p~~   96 (463)
                      +++|+.|+|++|. ++...     . +. ..++|++|+|++|.++.  +......+++|+.|++++|.....-    ...
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4678999999875 43321     1 22 34799999999998873  2222344678999999998543222    222


Q ss_pred             c-CCCCCCcEEEEECCCCcc-----CCccCCCCCCccEEecCCCCCCCc-----CcccCCCCCCccEEEeeCCCCCC---
Q 012450           97 L-CKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE---  162 (463)
Q Consensus        97 l-~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~L~~~~l~~---  162 (463)
                      + ...++|++|++++|.++.     ++..+..+++|++|++++|. ++.     +...+...++|+.|+|++|.+++   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence            3 357889999999999863     45556778899999999987 433     23345677899999999999986   


Q ss_pred             --cccccCCcccccccccccccccc
Q 012450          163 --LPESLGLLSSLEELYLERNNFER  185 (463)
Q Consensus       163 --~p~~l~~l~~L~~L~Ls~n~l~~  185 (463)
                        +...+...++|++|+|++|.++.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCH
Confidence              44556677899999999999863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=6e-09  Score=103.30  Aligned_cols=59  Identities=15%  Similarity=0.295  Sum_probs=35.8

Q ss_pred             CCCCccEEEeeCCCCCC-ccccc---CCcccccccccccccccc-----cchhhhCCCCccEeccccc
Q 012450          146 GLYSLTYLYLTDCAITE-LPESL---GLLSSLEELYLERNNFER-----IPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       146 ~l~~L~~L~L~~~~l~~-~p~~l---~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c  204 (463)
                      .+++|+.|+|.+|.+.+ .+..+   ..+++|++|+|+.|.++.     ++..+..+++|+.|++++|
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            45677777777776653 11111   346677777777776642     3344455677777777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=2.4e-08  Score=98.99  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=18.5

Q ss_pred             CCCccEEEeeCCCCCC-----cccccCCcccccccccccccc
Q 012450          147 LYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       147 l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l  183 (463)
                      +++|+.|+|+.|.+.+     ++..+..+++|+.|+|++|.+
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            4555555555555543     222333445555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.19  E-value=1e-05  Score=80.77  Aligned_cols=102  Identities=23%  Similarity=0.158  Sum_probs=52.8

Q ss_pred             cCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc-cccCCcccccc
Q 012450           97 LCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEE  175 (463)
Q Consensus        97 l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~  175 (463)
                      +..+.+|+.+.+..+...--...+..+..|+.+......   .....+..+.+|+.+.+..+ +..+. ..+.++.+|+.
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            344555555555443322222334444555555443321   11123556667777777543 44432 34566777777


Q ss_pred             cccccccccccc-hhhhCCCCccEecccc
Q 012450          176 LYLERNNFERIP-ESIIRLSKLSSLLVSY  203 (463)
Q Consensus       176 L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~  203 (463)
                      ++|..+ ++.+. ..+.+|.+|+.+.+..
T Consensus       325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          325 IDLPYL-VEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             ECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred             EEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence            777543 55554 3556677777776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.12  E-value=5e-07  Score=80.66  Aligned_cols=59  Identities=20%  Similarity=0.176  Sum_probs=34.9

Q ss_pred             CCCCccEEEeeCCCCCC-----cccccCCccccccccc--cccccc-----ccchhhhCCCCccEeccccc
Q 012450          146 GLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYL--ERNNFE-----RIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       146 ~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~L--s~n~l~-----~lp~~l~~l~~L~~L~L~~c  204 (463)
                      ..++|++|+|++|.+.+     +...+...++|++|+|  ++|.++     .+...+...+.|++|++++|
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            34556666666666654     3445555666777777  566654     23445555566666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.06  E-value=1.2e-06  Score=77.20  Aligned_cols=81  Identities=20%  Similarity=0.307  Sum_probs=44.6

Q ss_pred             cCccEEeeecCCCCCCCC--CCCCCCCccEEEeecc-CCCc-cCccccCC----CCccEEeeecCCCCCccc-hhcCCCC
Q 012450           31 NKLVILNLSGCSKLKSLP--EISSAGNIEKILLDGT-AIEE-LPSSIGCL----SRLLELNLGDCKNLKTLP-SSLCKLK  101 (463)
Q Consensus        31 ~~L~~L~L~~c~~l~~lp--~l~~l~~L~~L~L~~~-~i~~-lp~~i~~l----~~L~~L~l~~c~~l~~lp-~~l~~l~  101 (463)
                      .+|+.||+++|. ++...  .+..+++|++|+|++| .|+. --..+..+    ++|++|++++|..++.-. ..+.+++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            356666666664 43322  2556666666666666 3541 11113332    357777777776655421 2345667


Q ss_pred             CCcEEEEECCC
Q 012450          102 SLEEICLTGSA  112 (463)
Q Consensus       102 ~L~~L~l~~~~  112 (463)
                      +|+.|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            77777777763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.02  E-value=9.8e-07  Score=78.72  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=64.2

Q ss_pred             ccCCCCccEEeeecCCCCC-----ccchhcCCCCCCcEEEEECCCCcc-----CCccCCCCCCccEEecCCCCCCCc---
Q 012450           73 IGCLSRLLELNLGDCKNLK-----TLPSSLCKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSLKS---  139 (463)
Q Consensus        73 i~~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l~~---  139 (463)
                      +...++|++|++++|..+.     .+...+...++|++|+|++|.+..     +...+...++|++|++++|. ++.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence            3445556666665552222     133444555566666666665541     22333444566666666665 222   


Q ss_pred             --CcccCCCCCCccEEEe--eCCCCCC-----cccccCCccccccccccccccc
Q 012450          140 --LKLPFDGLYSLTYLYL--TDCAITE-----LPESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       140 --l~~~l~~l~~L~~L~L--~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~  184 (463)
                        +...+...++|+.|+|  ++|.+.+     +...+...++|++|+|++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              2334555667888888  7777765     4445566678888888888764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.97  E-value=5.4e-06  Score=72.88  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=17.0

Q ss_pred             ccccccccccc-cc--ccchhhhCCCCccEeccccccccc
Q 012450          172 SLEELYLERNN-FE--RIPESIIRLSKLSSLLVSYCERLQ  208 (463)
Q Consensus       172 ~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~L~~c~~l~  208 (463)
                      +|++|+|++|. ++  .+ ..+.++++|++|+|++|+.++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCC
T ss_pred             CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCC
Confidence            45555555542 33  12 133445555555555555444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.93  E-value=9.3e-05  Score=73.82  Aligned_cols=56  Identities=21%  Similarity=0.292  Sum_probs=34.4

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEee
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLD   62 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~   62 (463)
                      .+|.+|+++.|..  .++.+. ...+.++.+|+.+++..  .++.++.  +..+.+|+.+.+.
T Consensus        68 ~~c~~L~~i~lp~--~i~~I~-~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           68 QGCRKVTEIKIPS--TVREIG-EFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             TTCTTEEEEECCT--TCCEEC-TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             hCCCCceEEEeCC--CccCcc-hhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhccc
Confidence            4577777777763  355553 34577778888888764  2555544  5556666555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.92  E-value=0.00026  Score=70.57  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=43.0

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecC--CCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCcc
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGC--SKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLL   80 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c--~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~   80 (463)
                      .|+.+.+-.  .++.+. ...+.++.+|+.+.+..+  ..++.++.  +..+.+|+.+.+..+ ++.++.. +..+.+|+
T Consensus        65 ~L~sI~iP~--svt~Ig-~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~  140 (394)
T 4gt6_A           65 VLTSVQIPD--TVTEIG-SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD  140 (394)
T ss_dssp             CCCEEEECT--TCCEEC-TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred             cCEEEEECC--CeeEEh-HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence            477777764  355554 456777888888887653  23555544  555666665554432 3333322 44555566


Q ss_pred             EEeee
Q 012450           81 ELNLG   85 (463)
Q Consensus        81 ~L~l~   85 (463)
                      .+.+.
T Consensus       141 ~i~lp  145 (394)
T 4gt6_A          141 TVTIP  145 (394)
T ss_dssp             EEECC
T ss_pred             ccccc
Confidence            55554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.84  E-value=0.00034  Score=69.69  Aligned_cols=86  Identities=17%  Similarity=0.269  Sum_probs=51.7

Q ss_pred             CCCCCCccEEecCCCCCCCcC-cccCCCCCCccEEEeeCCCCCCcc-cccCCcccccccccccccccccc-hhhhCCCCc
Q 012450          120 IECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKL  196 (463)
Q Consensus       120 i~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L  196 (463)
                      +..+.+|+.+.+.+..  ..+ ...+.++++|+.+.+. ..+..++ ..+.+|.+|+.+.|..+ ++.+. ..+.+|.+|
T Consensus       261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            3455666666664321  122 2235677888888875 3455544 34667888888888654 55554 356778888


Q ss_pred             cEeccccccccccCC
Q 012450          197 SSLLVSYCERLQSLP  211 (463)
Q Consensus       197 ~~L~L~~c~~l~~l~  211 (463)
                      +.+.|...  ++.|+
T Consensus       337 ~~i~ip~s--v~~I~  349 (394)
T 4gt6_A          337 ERIAIPSS--VTKIP  349 (394)
T ss_dssp             CEEEECTT--CCBCC
T ss_pred             CEEEECcc--cCEEh
Confidence            88877532  44444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.39  E-value=0.0082  Score=59.04  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=28.8

Q ss_pred             CCCCCccEEEeeCCCCCCcc-cccCCcccccccccccccccccc-hhhhCCCCccEeccc
Q 012450          145 DGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVS  202 (463)
Q Consensus       145 ~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~  202 (463)
                      .++.+|+.+.+... +..++ ..+..+++|+.+.+.++.++.++ ..+.+|.+|+.+.|.
T Consensus       260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            34445555555332 22222 23455666666666666555554 344556666666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.37  E-value=0.00011  Score=69.15  Aligned_cols=58  Identities=19%  Similarity=0.204  Sum_probs=24.0

Q ss_pred             CCCccEEEeeCCCCCCcc---cccCCcccccccccccccccccchhhhCCC--CccEecccccc
Q 012450          147 LYSLTYLYLTDCAITELP---ESLGLLSSLEELYLERNNFERIPESIIRLS--KLSSLLVSYCE  205 (463)
Q Consensus       147 l~~L~~L~L~~~~l~~~p---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~c~  205 (463)
                      +++|+.|+|++|.+..++   ..+..+++|+.|+|++|+++.+. .+..+.  +|+.|+|++|+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence            344444444444444321   22334444444444444444331 122222  44445554444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.36  E-value=7e-05  Score=70.54  Aligned_cols=78  Identities=27%  Similarity=0.284  Sum_probs=47.7

Q ss_pred             CCCCccEEEeeccCCCccC---ccccCCCCccEEeeecCCCCCccchhcCCCC--CCcEEEEECCCCcc-CCc-------
Q 012450           52 SAGNIEKILLDGTAIEELP---SSIGCLSRLLELNLGDCKNLKTLPSSLCKLK--SLEEICLTGSAIEE-LPS-------  118 (463)
Q Consensus        52 ~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~--~L~~L~l~~~~i~~-lp~-------  118 (463)
                      .+++|+.|+|++|.|+.++   ..+..+++|+.|+|++|. +..+. .+..+.  +|++|++++|.+.. +|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4667777777777766443   445567777777777754 33332 233333  77788888877763 331       


Q ss_pred             cCCCCCCccEEec
Q 012450          119 PIECLSALCVLDL  131 (463)
Q Consensus       119 ~i~~l~~L~~L~l  131 (463)
                      .+..+++|+.||-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            2456777777763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.63  E-value=0.025  Score=55.46  Aligned_cols=173  Identities=16%  Similarity=0.162  Sum_probs=111.4

Q ss_pred             cccccCCcCccEEeeecCCCCCCC------------CC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCC
Q 012450           24 PSLIQHLNKLVILNLSGCSKLKSL------------PE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL   90 (463)
Q Consensus        24 ~~~~~~l~~L~~L~L~~c~~l~~l------------p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l   90 (463)
                      ...+..+.+|+.+.+.........            .. +.....+..+.+...........+..+.+|+.+.+..  .+
T Consensus       151 ~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~--~~  228 (379)
T 4h09_A          151 DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITS--GV  228 (379)
T ss_dssp             SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCT--TC
T ss_pred             cchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccceeeecc--ce
Confidence            346777888888887754322110            11 3344555555555432222233456677888888865  24


Q ss_pred             Cccc-hhcCCCCCCcEEEEECCCCccCC-ccCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCCCcc-cc
Q 012450           91 KTLP-SSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELP-ES  166 (463)
Q Consensus        91 ~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p-~~  166 (463)
                      ..++ ..+.++.+|+.+.+..+ ++.+. ..+..+.+|+.+.+...  ++.++. .+.++++|+.+.+.++.++.++ ..
T Consensus       229 ~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a  305 (379)
T 4h09_A          229 TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV  305 (379)
T ss_dssp             CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred             eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhh
Confidence            4443 34667888999888765 55553 34667888888888642  444443 4778899999999888888754 45


Q ss_pred             cCCcccccccccccccccccc-hhhhCCCCccEeccc
Q 012450          167 LGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVS  202 (463)
Q Consensus       167 l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~  202 (463)
                      +.+|.+|+.+.|..+ ++.+. ..+.+|.+|+.+.+.
T Consensus       306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            778999999998654 55554 356677777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.87  E-value=0.0023  Score=57.06  Aligned_cols=15  Identities=7%  Similarity=0.058  Sum_probs=6.7

Q ss_pred             hhhCCCCccEecccc
Q 012450          189 SIIRLSKLSSLLVSY  203 (463)
Q Consensus       189 ~l~~l~~L~~L~L~~  203 (463)
                      .+..-+.|+.|+|++
T Consensus       121 aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          121 STLVTQSIVEFKADN  135 (197)
T ss_dssp             HTTTTCCCSEEECCC
T ss_pred             HHhhCCceeEEECCC
Confidence            333344455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.37  E-value=0.0064  Score=54.20  Aligned_cols=84  Identities=15%  Similarity=0.095  Sum_probs=49.5

Q ss_pred             cCCCCCCcEEEEECC-CCc-----cCCccCCCCCCccEEecCCCCCCCc-----CcccCCCCCCccEEEeeCCCCCC---
Q 012450           97 LCKLKSLEEICLTGS-AIE-----ELPSPIECLSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE---  162 (463)
Q Consensus        97 l~~l~~L~~L~l~~~-~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~L~~~~l~~---  162 (463)
                      +.+-+.|++|+|+++ .|.     .+-..+..-+.|+.|+|++|. +.+     +...+..-++|+.|+|++|.+.+   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            445567777777764 554     233344455677777777765 222     22223344667777777777764   


Q ss_pred             --cccccCCcccccccccccc
Q 012450          163 --LPESLGLLSSLEELYLERN  181 (463)
Q Consensus       163 --~p~~l~~l~~L~~L~Ls~n  181 (463)
                        +-..+..-+.|++|+|++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence              3344555566777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.06  E-value=0.02  Score=47.36  Aligned_cols=51  Identities=22%  Similarity=0.258  Sum_probs=23.1

Q ss_pred             EEEeeCCCCC--CcccccCCcccccccccccccccccch-hhhCCCCccEeccccc
Q 012450          152 YLYLTDCAIT--ELPESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYC  204 (463)
Q Consensus       152 ~L~L~~~~l~--~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c  204 (463)
                      .++.++.+++  .+|..+  .++|+.|+|++|+++.+|. .+..+++|+.|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            3444444444  444321  2245555555555554443 2344455555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.07  E-value=0.13  Score=42.38  Aligned_cols=32  Identities=34%  Similarity=0.564  Sum_probs=12.5

Q ss_pred             CcEEEEECCCCccCCcc-CCCCCCccEEecCCC
Q 012450          103 LEEICLTGSAIEELPSP-IECLSALCVLDLGDC  134 (463)
Q Consensus       103 L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c  134 (463)
                      |+.|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            33344444444433322 233344444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	463
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 28  QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDC 87
             L  L  L+L+G  +LK +  ++S  N+  + L    I  L   +  L++L EL LG  
Sbjct: 216 GILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 273

Query: 88  KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL 147
           +     P +     +  E+        E  SPI  L  L  L L     +  +  P   L
Sbjct: 274 QISNISPLAGLTALTNLELNEN---QLEDISPISNLKNLTYLTLYFNN-ISDI-SPVSSL 328

Query: 148 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 203
             L  L+  +  ++++  SL  L+++  L    N    +   +  L++++ L ++ 
Sbjct: 329 TKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 7e-09
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 23  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82
           +   +  L  L  L+L+   ++ +L  +S    + ++ L    I  +    G  +     
Sbjct: 233 DIGTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 83  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 142
                +N     S +  LK+L  + L  + I ++  P+  L+ L  L   + K +  +  
Sbjct: 292 L---NENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-VSDVS- 345

Query: 143 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERN 181
               L ++ +L      I++L   L  L+ + +L L   
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 32/186 (17%), Positives = 77/186 (41%), Gaps = 11/186 (5%)

Query: 41  CSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKL 100
            +++  +  +    N++++ L+G  ++++ + +  L+ L +L+L + +     P  L  L
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP--LSGL 262

Query: 101 KSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI 160
             L E+ L  + I  +       +   +      ++      P   L +LTYL L    I
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNL---ELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 161 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC--NLY 218
           +++   +  L+ L+ L+   N    +  S+  L+ ++ L   +  ++  L  L     + 
Sbjct: 320 SDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRIT 376

Query: 219 WLDAQH 224
            L    
Sbjct: 377 QLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 142 LPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 201
           +    L  +T L      I  + + +  L++L ++    N    I   +  L+KL  +L+
Sbjct: 38  VSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 95

Query: 202 SYCERLQSLPKLPCNLYWLDAQHC 225
           +  +     P              
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFN 119

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 5/180 (2%)

Query: 43  KLKSLPEISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK 101
            L+ +P+     +   + L    I E+       L  L  L L + K  K  P +   L 
Sbjct: 21  GLEKVPKDLPP-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 102 SLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 161
            LE + L+ + ++ELP  +        +   +   ++           +  L       +
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 162 -ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWL 220
                +   +  L  + +   N   IP+ +     L+ L +   +  +        L  L
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 9e-05
 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 3/122 (2%)

Query: 127 CVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFER 185
           C L +  C  L   K+P D       L L +  ITE+ +     L +L  L L  N   +
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 186 I-PESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFY 244
           I P +   L KL  L +S   +L+ LP+           H   +  +     +       
Sbjct: 70  ISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 245 LN 246
           + 
Sbjct: 129 VE 130

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 32/209 (15%), Positives = 69/209 (33%), Gaps = 21/209 (10%)

Query: 1   MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL 60
             H  ++ ++  +  N   +     L  +  K   +       +K L  I  A       
Sbjct: 106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----- 160

Query: 61  LDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI 120
                I  +P  +     L EL+L   K  K   +SL  L +L ++ L+ ++I  + +  
Sbjct: 161 ----NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

Query: 121 ECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES-------LGLLSSL 173
              +        +   L  +         +  +YL +  I+ +  +           +S 
Sbjct: 215 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274

Query: 174 EELYLERN--NFERIPESIIR-LSKLSSL 199
             + L  N   +  I  S  R +   +++
Sbjct: 275 SGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 144 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 203
            D   SL  L +++  + ELP        LE L    N+   +PE       L  L V Y
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL---PQNLKQLHVEY 333

Query: 204 CERLQSLPKLPCNLYWL 220
              L+  P +P ++  L
Sbjct: 334 N-PLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 170 LSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLE 229
             SLEEL +  N    +P       +L  L+ S+   L  +P+LP NL  L  ++   L 
Sbjct: 283 PPSLEELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPELPQNLKQLHVEYN-PLR 337

Query: 230 SLSGLFSS 237
               +  S
Sbjct: 338 EFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 34/256 (13%), Positives = 75/256 (29%), Gaps = 7/256 (2%)

Query: 149 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQ 208
               L L +  ++ LPE       LE L    N+   +PE    L      L+     L+
Sbjct: 39  QAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSL----KSLLVDNNNLK 91

Query: 209 SLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQL 268
           +L  LP  L +L   +    +      SS+  +    N + K    L   +E        
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 269 MATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFV 328
           +      +    ++      + +    ++P+   S   G++I  ++            + 
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 329 FCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQ 388
              ++                +  +      P  +       N       L    ++ + 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 389 DLNGCWEYNCVPEAVQ 404
             N       +P +++
Sbjct: 272 SSNEIRSLCDLPPSLE 287

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 30/99 (30%)

Query: 98  CKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD 157
               SLEE+ ++ + + ELP+                               L  L  + 
Sbjct: 281 DLPPSLEELNVSNNKLIELPA---------------------------LPPRLERLIASF 313

Query: 158 CAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKL 196
             + E+PE   L  +L++L++E N     P+    +  L
Sbjct: 314 NHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 8e-06
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 82  LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK 141
           L+L       T+   L +L  +  + L+ + +  LP  +  L  L VL   D        
Sbjct: 3   LHLAH--KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--V 58

Query: 142 LPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 199
                L  L  L L +  + +    + L     L  L L+ N+  +      RL+++   
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 200 LVS 202
           + S
Sbjct: 119 VSS 121

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 34/276 (12%), Positives = 64/276 (23%), Gaps = 10/276 (3%)

Query: 149 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNF-----ERIPESIIRLSKLSSLLVSY 203
           SL    +T      +   L    S++E+ L  N         + E+I     L     S 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 204 CERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDAL 263
               +   ++P  L  L  Q       L     + +          +            L
Sbjct: 69  IFTGRVKDEIPEALRLL-LQALLKCPKL----HTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 264 QNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNK 323
           +++ L       +   KI+    +  V       P   S     + +            +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 324 VFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYY 383
               +    +                      +     +       +        L  + 
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 384 FFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLD 419
                 LN C        AV   F K+     +TL 
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 279

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 12/55 (21%), Positives = 17/55 (30%)

Query: 161 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC 215
             LP+ L  L  L  L +  NN          L +      +  + L   P   C
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 8/153 (5%)

Query: 61  LDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI 120
           L    +E+L   +       +  L D K L++ P  L        +    S    L    
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQAL-DLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIE 61

Query: 121 ECLSALCVLDLGDCK--SLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELY 177
           E +  L  L+L + +   L  +        +L  L L+   +    E        LEEL+
Sbjct: 62  ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 178 LERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210
           L+ N+           S   S +     +L  L
Sbjct: 122 LDGNSLSDTFRD---QSTYISAIRERFPKLLRL 151

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 44  LKSLPEISS--AGNIEKILLDGT--AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCK 99
           ++   E  S  A   EK+ L G    IE++ +++  L     L L    N++ +  SL  
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSG 68

Query: 100 LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 159
           +++L  + L  + I+++ +       L  L +   +      +       + Y+      
Sbjct: 69  MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128

Query: 160 ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210
                + L  L  LE+L L  N      +     S+    +V     L+ L
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 9/85 (10%), Positives = 16/85 (18%), Gaps = 4/85 (4%)

Query: 144 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 203
           +        L L    I  +      L   + +    N   ++         L  L    
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD----GFPLLRRLKTLL 69

Query: 204 CERLQSLPKLPCNLYWLDAQHCTTL 228
               +           L       L
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELIL 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	463
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.41

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=1.5e-21  Score=188.39  Aligned_cols=224  Identities=20%  Similarity=0.276  Sum_probs=178.4

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCC-CCCCC-CCCCCCccEEEeeccCCCcc-CccccCCCCccEE
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKL-KSLPE-ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL   82 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l-~~lp~-l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L   82 (463)
                      +++.|+|+++..-...+.|..++++++|++|+|++|+.+ +.+|. ++++++|++|+|++|++..+ +..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            689999999654443223789999999999999986555 48887 99999999999999999865 4457889999999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCccCCCCCCc-cEEecCCCCC-----------------------C
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSAL-CVLDLGDCKS-----------------------L  137 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L-~~L~l~~c~~-----------------------l  137 (463)
                      ++++|.....+|..+.++++|+.+++++|.+. .+|..+..+..+ +.+++++|..                       .
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99998888888999999999999999999887 677777777665 6666665532                       1


Q ss_pred             CcCcccCCCCCCccEEEeeCCCCCCcccccCCccccccccccccccc-ccchhhhCCCCccEeccccccccccCCCCC--
Q 012450          138 KSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKLP--  214 (463)
Q Consensus       138 ~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~--  214 (463)
                      ..+|..+..+++|+.|+++++.+...+..++.+++|+.|+|++|+++ .+|..+.++++|++|+|++|..-..+|...  
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L  290 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL  290 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccC
Confidence            12344556778899999999988876667888999999999999998 799999999999999999997655777642  


Q ss_pred             CCccEeeccCccccc
Q 012450          215 CNLYWLDAQHCTTLE  229 (463)
Q Consensus       215 ~~L~~L~i~~c~~L~  229 (463)
                      .+|+.+++.+.+.|.
T Consensus       291 ~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         291 QRFDVSAYANNKCLC  305 (313)
T ss_dssp             GGSCGGGTCSSSEEE
T ss_pred             CCCCHHHhCCCcccc
Confidence            456666666655444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=8.2e-19  Score=168.26  Aligned_cols=215  Identities=19%  Similarity=0.220  Sum_probs=160.4

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   83 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   83 (463)
                      ++|++|+|++ +.+++++ +..+.++++|++|++++|......|. +..+++|++|++++|+++.+|...  ...|..|.
T Consensus        31 ~~l~~L~Ls~-N~i~~l~-~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~  106 (305)
T d1xkua_          31 PDTALLDLQN-NKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELR  106 (305)
T ss_dssp             TTCCEEECCS-SCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEE
T ss_pred             CCCCEEECcC-CcCCCcC-hhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhh
Confidence            6789999998 4688883 34688899999999999765544455 888999999999999998888653  34666666


Q ss_pred             eecCCCCC--------------------------ccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCC
Q 012450           84 LGDCKNLK--------------------------TLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL  137 (463)
Q Consensus        84 l~~c~~l~--------------------------~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l  137 (463)
                      +.++....                          ..+..+..+++|+.+++++|.+..+|..+  +++|+.|++++|...
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKIT  184 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCC
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCC
Confidence            65543211                          11223455677888888888888777543  678888888888766


Q ss_pred             CcCcccCCCCCCccEEEeeCCCCCCc-ccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC----
Q 012450          138 KSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK----  212 (463)
Q Consensus       138 ~~l~~~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~----  212 (463)
                      ...+..+.+++.++.|++++|.+.++ +..+..+++|++|+|++|+++.+|..+..+++|+.|++++|+ ++.++.    
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~  263 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFC  263 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSS
T ss_pred             CCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCc-cCccChhhcc
Confidence            66666778888888888888888874 556778888999999998888888888888899999998874 666542    


Q ss_pred             ------CCCCccEeeccCcc
Q 012450          213 ------LPCNLYWLDAQHCT  226 (463)
Q Consensus       213 ------l~~~L~~L~i~~c~  226 (463)
                            ...+|+.|++.+.+
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSS
T ss_pred             CcchhcccCCCCEEECCCCc
Confidence                  23567777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3e-19  Score=168.22  Aligned_cols=190  Identities=22%  Similarity=0.216  Sum_probs=98.1

Q ss_pred             cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450            7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   84 (463)
Q Consensus         7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l   84 (463)
                      +.+++.++ +.++.+  |..+.  ++|++|+|++| .++.+|.  +..+++|++|+|++|.|+.++. ++.+++|++|++
T Consensus        12 ~~~v~C~~-~~L~~i--P~~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~L   84 (266)
T d1p9ag_          12 HLEVNCDK-RNLTAL--PPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDL   84 (266)
T ss_dssp             CCEEECTT-SCCSSC--CSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEEC
T ss_pred             CeEEEccC-CCCCee--CcCcC--cCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc-cccccccccccc
Confidence            34444444 345555  33332  35556666553 3444443  5555566666666655555543 345555666666


Q ss_pred             ecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCc
Q 012450           85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL  163 (463)
Q Consensus        85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~  163 (463)
                      ++| .+...+..+..+++|+.|+++++.+..++. .+..+.++++|++++|......+..+..+++|+.|++++|+++.+
T Consensus        85 s~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ccc-cccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            554 334444455555556666665555554432 234455555555555542222222334455555555555555554


Q ss_pred             c-cccCCcccccccccccccccccchhhhCCCCccEeccccc
Q 012450          164 P-ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       164 p-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c  204 (463)
                      + ..+..+++|++|+|++|+++.+|..+..+++|+.|+|++|
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             CccccccccccceeecccCCCcccChhHCCCCCCCEEEecCC
Confidence            3 2344555555555555555555555555555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-18  Score=163.55  Aligned_cols=177  Identities=19%  Similarity=0.200  Sum_probs=154.7

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   84 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l   84 (463)
                      ++|++|+|++ +.++.++ +..+.++++|++|+|++| .++.+|.++.+++|++|++++|.++.++..+..+++|+.|++
T Consensus        31 ~~l~~L~Ls~-N~i~~l~-~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSE-NLLYTFS-LATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTT-SCCSEEE-GGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcC-CcCCCcC-HHHhhccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            4799999999 5677773 467899999999999996 688888888999999999999999999988999999999999


Q ss_pred             ecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCc
Q 012450           85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL  163 (463)
Q Consensus        85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~  163 (463)
                      +++......+..+..+.+++.|++++|.++.+|.. +..+++|+.|++++|..-...+..+..+++|++|+|++|+++.+
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l  187 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI  187 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCccc
Confidence            99876655566678899999999999999988765 56789999999999874433445578899999999999999999


Q ss_pred             ccccCCccccccccccccccc
Q 012450          164 PESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       164 p~~l~~l~~L~~L~Ls~n~l~  184 (463)
                      |..+..+++|+.|+|++|.+.
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBC
T ss_pred             ChhHCCCCCCCEEEecCCCCC
Confidence            999999999999999999764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=3.5e-19  Score=171.59  Aligned_cols=195  Identities=17%  Similarity=0.230  Sum_probs=148.0

Q ss_pred             cCccEEeeecCCCCC--CCCC-CCCCCCccEEEeec-cCCC-ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcE
Q 012450           31 NKLVILNLSGCSKLK--SLPE-ISSAGNIEKILLDG-TAIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE  105 (463)
Q Consensus        31 ~~L~~L~L~~c~~l~--~lp~-l~~l~~L~~L~L~~-~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  105 (463)
                      .+++.|+|+++..-+  .+|. ++.+++|++|+|++ |.+. .+|..++++++|++|++++|......+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            469999999975444  4677 99999999999997 6777 89999999999999999998766666777889999999


Q ss_pred             EEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCc-cEEEeeCCCCCC---------------------
Q 012450          106 ICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL-TYLYLTDCAITE---------------------  162 (463)
Q Consensus       106 L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L-~~L~L~~~~l~~---------------------  162 (463)
                      +++++|.+. .+|..+..++.|+.+++++|.....+|..+..+..+ +.+++++|+++.                     
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999876 678899999999999999998766777777776665 677777776543                     


Q ss_pred             ---cccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCc
Q 012450          163 ---LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC  225 (463)
Q Consensus       163 ---~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c  225 (463)
                         +|..+..+++|+.|++++|.+...+..+..+++|+.|++++|+....+|..   .++|++|+++++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence               233445556666677776666554555666677777777776554455542   245666666664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-17  Score=158.12  Aligned_cols=189  Identities=23%  Similarity=0.342  Sum_probs=137.8

Q ss_pred             eecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccEEeeec
Q 012450           10 IIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGD   86 (463)
Q Consensus        10 L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~   86 (463)
                      ++.++ ..++.+  |..+.  +++++|+|++| .++.+|.  +..+++|++|+++++.+..++.. ...+..+..+....
T Consensus        16 v~c~~-~~L~~i--P~~ip--~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          16 TSCPQ-QGLQAV--PVGIP--AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EECCS-SCCSSC--CTTCC--TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEcCC-CCCCcc--CCCCC--CCCCEEECcCC-cCCCCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            44444 347777  44443  56788888885 5677775  77888888888888888866554 45677788887776


Q ss_pred             CCCCCcc-chhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCCCCCCc
Q 012450           87 CKNLKTL-PSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCAITEL  163 (463)
Q Consensus        87 c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~~l~~~  163 (463)
                      +..+..+ +..+.++++|++|++++|.+..++. .+....+|+.+++++|. ++.++ ..+..+++|+.|++++|++..+
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCccccc
Confidence            6666666 4557788888888888888876644 45667888888888776 44553 4566778888888888888775


Q ss_pred             -ccccCCccccccccccccccccc-chhhhCCCCccEecccccc
Q 012450          164 -PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       164 -p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~  205 (463)
                       +..+..+++|+.+++++|+++.+ |..+..+++|+.|++++|.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence             34567788888888888888754 5677888888888888875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2e-17  Score=162.70  Aligned_cols=216  Identities=25%  Similarity=0.409  Sum_probs=148.6

Q ss_pred             CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCc-------------
Q 012450            2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE-------------   68 (463)
Q Consensus         2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~-------------   68 (463)
                      +.+++|++|+|++| .++++  + .++++++|++|++++| .+..++.++.+++|+.|+++++.++.             
T Consensus        63 ~~L~nL~~L~Ls~N-~l~~l--~-~l~~L~~L~~L~L~~n-~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~  137 (384)
T d2omza2          63 EYLNNLTQINFSNN-QLTDI--T-PLKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL  137 (384)
T ss_dssp             GGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccCCCCCEEeCcCC-cCCCC--c-cccCCccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            45777888888874 56666  3 4777788888888775 45556656666677766665543321             


Q ss_pred             --------------------------------------------------------------------------cCcccc
Q 012450           69 --------------------------------------------------------------------------LPSSIG   74 (463)
Q Consensus        69 --------------------------------------------------------------------------lp~~i~   74 (463)
                                                                                                ++. ..
T Consensus       138 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~  216 (384)
T d2omza2         138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LG  216 (384)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GG
T ss_pred             ccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-cc
Confidence                                                                                      110 22


Q ss_pred             CCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEE
Q 012450           75 CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLY  154 (463)
Q Consensus        75 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~  154 (463)
                      ..++|+.|++++| .++.++ .+..+++|+.|++++|.++.++. ++.+++|+.|+++++. +..++. +..++.++.+.
T Consensus       217 ~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~l~~l~  291 (384)
T d2omza2         217 ILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLE  291 (384)
T ss_dssp             GCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEE
T ss_pred             ccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcc-cCCCCc-ccccccccccc
Confidence            2456667777765 344554 57789999999999999998864 7788999999999876 455543 66777788888


Q ss_pred             eeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccCcccccccc
Q 012450          155 LTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       155 L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~c~~L~~l~  232 (463)
                      +..|.+.+++ .+..+++++.|++++|+++.++ .+..+++|++|++++| .++.++.+  .++|++|+++++ +++.++
T Consensus       292 ~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         292 LNENQLEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             CCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCBCG
T ss_pred             cccccccccc-ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCC-cCCCCh
Confidence            8888777654 3667777888888888877765 3677788888888877 45555433  257777887665 455554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.8e-17  Score=151.93  Aligned_cols=188  Identities=22%  Similarity=0.360  Sum_probs=122.3

Q ss_pred             cccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcE
Q 012450           26 LIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE  105 (463)
Q Consensus        26 ~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  105 (463)
                      ....+.+|+.|++.+| .+++++.+..+++|++|++++|.++.++. +..+++|+++++++|. .+.++ .+..+++|+.
T Consensus        36 ~~~~l~~L~~L~l~~~-~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          36 TQADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             CHHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred             CHHHcCCcCEEECCCC-CCCcchhHhcCCCCcEeecCCceeecccc-cccccccccccccccc-ccccc-cccccccccc
Confidence            3455677777777775 46666667777777777777777776654 6677777777777653 34444 3667777777


Q ss_pred             EEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccc
Q 012450          106 ICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFER  185 (463)
Q Consensus       106 L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~  185 (463)
                      +.++++....++. +.....+..+.++++... .... +.++++|+.|++++|.+.+.+. ++++++|++|++++|+++.
T Consensus       112 l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~-~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccch-hccccchhhhhchhhhhc-hhhh-hccccccccccccccccccchh-hcccccceecccCCCccCC
Confidence            7777766655432 445667777777665532 2222 5566777777777777766543 6677777777777777777


Q ss_pred             cchhhhCCCCccEeccccccccccCCCC--CCCccEeecc
Q 012450          186 IPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQ  223 (463)
Q Consensus       186 lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~  223 (463)
                      ++. +.++++|++|++++| .++.++.+  .++|+.|+++
T Consensus       188 l~~-l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 ISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             Chh-hcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            653 667777777777777 46666532  2455555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.7e-17  Score=149.09  Aligned_cols=167  Identities=26%  Similarity=0.396  Sum_probs=131.3

Q ss_pred             cCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEE
Q 012450           28 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC  107 (463)
Q Consensus        28 ~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  107 (463)
                      ..+.+|+.|++++| .++.++.+..+++|++|++++|.++.++. ++.+++|++|++++| .++.+| .+..+++|+.|+
T Consensus        43 ~~L~~L~~L~l~~~-~i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          43 NELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred             HHhcCccEEECcCC-CCCCchhHhhCCCCCEEeCCCccccCccc-cccCccccccccccc-cccccc-cccccccccccc
Confidence            35678888888885 66777778888888999998888888764 678888888988886 466666 477888888888


Q ss_pred             EECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccc
Q 012450          108 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP  187 (463)
Q Consensus       108 l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp  187 (463)
                      ++++.+..++ .+..+++|+.+++++|. ++..+. +..+++|+.+++++|.+.+++. +.++++|++|++++|+++.++
T Consensus       119 l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~~-~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         119 LEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             cccccccccc-ccccccccccccccccc-cccccc-cccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh
Confidence            8888887765 46778888888888776 444443 6677888888888888888754 778888888888888888887


Q ss_pred             hhhhCCCCccEecccc
Q 012450          188 ESIIRLSKLSSLLVSY  203 (463)
Q Consensus       188 ~~l~~l~~L~~L~L~~  203 (463)
                       .+.++++|+.|+|++
T Consensus       195 -~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 -ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCSEEEEEE
T ss_pred             -hhcCCCCCCEEEccC
Confidence             578888888888864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.5e-17  Score=151.06  Aligned_cols=188  Identities=21%  Similarity=0.326  Sum_probs=153.9

Q ss_pred             CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450            3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   82 (463)
Q Consensus         3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   82 (463)
                      .+.+|+.|++.+| .++++   ++++++++|++|++++| .+..++.+..+++|+++++++|.++.++. +..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~-~i~~l---~~l~~l~~L~~L~ls~n-~i~~~~~l~~l~~l~~l~~~~n~~~~i~~-l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGT-GVTTI---EGVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEE
T ss_pred             HcCCcCEEECCCC-CCCcc---hhHhcCCCCcEeecCCc-eeecccccccccccccccccccccccccc-cccccccccc
Confidence            3568999999985 56776   46889999999999996 56777778999999999999998887764 7889999999


Q ss_pred             eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450           83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  162 (463)
Q Consensus        83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~  162 (463)
                      ++++|.... + ..+...+.++.+.++++.+.... .+..+++|++|++++|. +...+. +.++++|+.|++++|.+++
T Consensus       113 ~l~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         113 DLTSTQITD-V-TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             ECTTSCCCC-C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc-c-chhccccchhhhhchhhhhchhh-hhccccccccccccccc-cccchh-hcccccceecccCCCccCC
Confidence            998875433 3 23667889999999988887654 35678899999999876 444443 7889999999999999988


Q ss_pred             cccccCCcccccccccccccccccchhhhCCCCccEecccc
Q 012450          163 LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY  203 (463)
Q Consensus       163 ~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  203 (463)
                      ++. ++.+++|++|+|++|+++.++ .+.++++|+.|++++
T Consensus       188 l~~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             Chh-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            764 788999999999999999887 488999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1e-16  Score=143.95  Aligned_cols=163  Identities=22%  Similarity=0.426  Sum_probs=107.6

Q ss_pred             cCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEE
Q 012450           28 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC  107 (463)
Q Consensus        28 ~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  107 (463)
                      ..+++|+.|++++| .+++++.+..+++|++|++++|.++.++. ++.+++|++|++++|. ...++ .+.++++|+.|+
T Consensus        37 ~~l~~l~~L~l~~~-~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          37 TDLDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred             HHhcCCCEEECCCC-CCCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccc-ccccc-cccccccccccc
Confidence            34667777777774 46666666777777777777777776654 6677777777777653 34444 366777777777


Q ss_pred             EECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccc
Q 012450          108 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP  187 (463)
Q Consensus       108 l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp  187 (463)
                      ++++.+..++ .+..+++|+.|++++|. +..++. +..+++|+.|++.+|.+++++ .++++++|++|++++|+++.++
T Consensus       113 l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         113 LFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccccc-ccchhhhhHHhhhhhhh-hccccc-ccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc
Confidence            7777666543 35566777777777665 444443 566677777777777776664 3666777777777777776665


Q ss_pred             hhhhCCCCccEe
Q 012450          188 ESIIRLSKLSSL  199 (463)
Q Consensus       188 ~~l~~l~~L~~L  199 (463)
                       .+.++++|+.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             45666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.2e-16  Score=143.49  Aligned_cols=161  Identities=19%  Similarity=0.334  Sum_probs=138.6

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   83 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   83 (463)
                      +++|++|++++| .++++   ++++.+++|++|++++| .++.++.++.+++|++|++++|.+..++. +..+++|+.|+
T Consensus        39 l~~l~~L~l~~~-~i~~l---~~l~~l~nL~~L~Ls~N-~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSI---DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             hcCCCEEECCCC-CCCCc---cccccCCCcCcCccccc-cccCcccccCCcccccccccccccccccc-ccccccccccc
Confidence            578999999995 56776   56889999999999996 67888889999999999999999988875 88999999999


Q ss_pred             eecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCc
Q 012450           84 LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL  163 (463)
Q Consensus        84 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~  163 (463)
                      +++|.... + ..+..+++|+.|++++|.+..++ .+..+++|+.|++.+|. ++.++. +.++++|+.|++++|+++++
T Consensus       113 l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~-l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         113 LFNNQITD-I-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKP-LANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             CCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccc-c-cccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCcc-ccCCCCCCEEECCCCCCCCC
Confidence            99876543 3 34788999999999999998875 57889999999999986 666765 88999999999999999998


Q ss_pred             ccccCCccccccc
Q 012450          164 PESLGLLSSLEEL  176 (463)
Q Consensus       164 p~~l~~l~~L~~L  176 (463)
                      + .++.+++|++|
T Consensus       188 ~-~l~~L~~L~~L  199 (199)
T d2omxa2         188 S-VLAKLTNLESL  199 (199)
T ss_dssp             G-GGGGCTTCSEE
T ss_pred             c-cccCCCCCCcC
Confidence            6 47788888875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=2.4e-16  Score=150.71  Aligned_cols=198  Identities=21%  Similarity=0.290  Sum_probs=156.6

Q ss_pred             CCCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccC----------
Q 012450            1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELP----------   70 (463)
Q Consensus         1 l~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp----------   70 (463)
                      ++++++|++|++++|...+-.  +..+.++++|+.|++++| .++.+|. .....++.|.+.++.+..++          
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~--~~~f~~l~~L~~L~l~~n-~l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~  126 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKN-QLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQM  126 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSS-CCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             hhccccccccccccccccccc--hhhhhCCCccCEecccCC-ccCcCcc-chhhhhhhhhccccchhhhhhhhhhccccc
Confidence            367899999999996655433  677999999999999996 5777775 22346666666665554332          


Q ss_pred             -----------------ccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecC
Q 012450           71 -----------------SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLG  132 (463)
Q Consensus        71 -----------------~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~  132 (463)
                                       ..+..+++|+.+++++|. +..+|..+  +++|+.|++++|.+... +..+..++.++.|+++
T Consensus       127 ~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s  203 (305)
T d1xkua_         127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS  203 (305)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred             cccccccccccccCCCccccccccccCccccccCC-ccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccc
Confidence                             234567889999999864 55666543  68999999999988744 5678899999999999


Q ss_pred             CCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchh-------hhCCCCccEecccccc
Q 012450          133 DCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPES-------IIRLSKLSSLLVSYCE  205 (463)
Q Consensus       133 ~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-------l~~l~~L~~L~L~~c~  205 (463)
                      +|......+..+.++++|++|+|++|+++.+|.++..+++|+.|+|++|+++.++..       ...+.+|+.|+|++|+
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            987544445667889999999999999999999999999999999999999887642       3457889999999986

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.9e-16  Score=155.68  Aligned_cols=191  Identities=21%  Similarity=0.391  Sum_probs=128.9

Q ss_pred             cccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCC
Q 012450           24 PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSL  103 (463)
Q Consensus        24 ~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L  103 (463)
                      ......+++++.+++++| .+..++....+++|++|++++|.++.++ .+..+++|+.|++++|. +..++. +..+++|
T Consensus       190 ~~~~~~l~~~~~l~l~~n-~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L  265 (384)
T d2omza2         190 ISVLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKL  265 (384)
T ss_dssp             CGGGGGCTTCSEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTC
T ss_pred             ccccccccccceeeccCC-ccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCc-cCCCCc-ccccccC
Confidence            345666777777777774 4555555666777778888777777665 36677778888877764 444443 6677778


Q ss_pred             cEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccc
Q 012450          104 EEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       104 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l  183 (463)
                      +.|+++++.++.+++ +..+..++.+++..|. +..++. +..+++++.|++++|++++++. +..+++|++|++++|++
T Consensus       266 ~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~-l~~~~~-~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         266 TELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             SEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred             CEeeccCcccCCCCc-cccccccccccccccc-cccccc-cchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCC
Confidence            888887777776653 5567777777777665 344433 5667777778888777777653 66777788888887777


Q ss_pred             cccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccC
Q 012450          184 ERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQH  224 (463)
Q Consensus       184 ~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~  224 (463)
                      +.++ .+.++++|++|++++| .++.++.+  .++|+.|++++
T Consensus       342 ~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         342 SDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             CCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCC
T ss_pred             CCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCC
Confidence            7766 4677777888888776 34454432  24566666544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.8e-16  Score=147.24  Aligned_cols=197  Identities=25%  Similarity=0.363  Sum_probs=157.0

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeec-cCCCcc-CccccCCCCcc
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG-TAIEEL-PSSIGCLSRLL   80 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~-~~i~~l-p~~i~~l~~L~   80 (463)
                      +++++|+|++ +.++.++ +..+.++++|++|+++++ .++.++.  +..+..++.+.... +.++.+ +..+..+++|+
T Consensus        32 ~~~~~L~Ls~-N~i~~i~-~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIFLHG-NRISHVP-AASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEECTT-SCCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEECcC-CcCCCCC-HHHhhccccccccccccc-cccccccccccccccccccccccccccccccchhhcccccCC
Confidence            3678999998 5677874 456889999999999985 5665555  66788888887764 577776 44578899999


Q ss_pred             EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcC-cccCCCCCCccEEEeeCC
Q 012450           81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDC  158 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~L~~~  158 (463)
                      +|++++|......+..+...++|+.+++++|.++.+|. .+..+++|+.|++++|. ++.+ +..+.++++|+.+++++|
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhhhccccccchhhhhhc
Confidence            99999876544445567778899999999999998864 56788899999999886 4544 456788999999999999


Q ss_pred             CCCC-cccccCCcccccccccccccccccc-hhhhCCCCccEecccccc
Q 012450          159 AITE-LPESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       159 ~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~  205 (463)
                      .+++ .|..+..+++|++|++++|++..++ ..+..+++|+.|++++|+
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            9888 4778889999999999999998766 567889999999998874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.4e-16  Score=144.40  Aligned_cols=165  Identities=27%  Similarity=0.367  Sum_probs=142.3

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   83 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   83 (463)
                      +.+|++|++++| .++.+   .++..+++|++|++++| .++.++.++.+++|++|++++|.++.++. +..+++|+.|+
T Consensus        45 L~~L~~L~l~~~-~i~~l---~~l~~l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             hcCccEEECcCC-CCCCc---hhHhhCCCCCEEeCCCc-cccCccccccCcccccccccccccccccc-ccccccccccc
Confidence            467899999985 56666   46889999999999996 67888889999999999999999999874 88999999999


Q ss_pred             eecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCc
Q 012450           84 LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL  163 (463)
Q Consensus        84 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~  163 (463)
                      +++|.. ..++ .+..+++|+.+++++|.++..+ .+..+++|+.+++++|. ++.++. +.++++|+.|++++|.++++
T Consensus       119 l~~~~~-~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~-l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         119 LEHNGI-SDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             CTTSCC-CCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred             cccccc-cccc-cccccccccccccccccccccc-ccccccccccccccccc-cccccc-ccCCCCCCEEECCCCCCCCC
Confidence            999754 4444 5788999999999999998764 46789999999999986 566664 88999999999999999998


Q ss_pred             ccccCCccccccccccc
Q 012450          164 PESLGLLSSLEELYLER  180 (463)
Q Consensus       164 p~~l~~l~~L~~L~Ls~  180 (463)
                      + .+..+++|++|+|++
T Consensus       194 ~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCSEEEEEE
T ss_pred             h-hhcCCCCCCEEEccC
Confidence            7 589999999999975

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=4.4e-15  Score=143.61  Aligned_cols=216  Identities=24%  Similarity=0.344  Sum_probs=127.2

Q ss_pred             CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeee
Q 012450            6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLG   85 (463)
Q Consensus         6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~   85 (463)
                      ++++|+|+++ .++.+  |+.   .++|++|++++ +.++.+|..  +.+|+.|++++|.++.++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~-~L~~l--p~~---~~~L~~L~Ls~-N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNL-GLSSL--PEL---PPHLESLVASC-NSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTS-CCSCC--CSC---CTTCSEEECCS-SCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCC-CCCCC--CCC---CCCCCEEECCC-CCCcccccc--hhhhhhhhhhhcccchhhhh---cccccccccc
Confidence            5777888773 56677  432   45777788876 466777752  34666666666666655431   1346666666


Q ss_pred             cCCCCCccchhcCCCCCCcEEEEECCCCccCCc-------------------cCCCCCCccEEecCCCCCCCc-------
Q 012450           86 DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-------------------PIECLSALCVLDLGDCKSLKS-------  139 (463)
Q Consensus        86 ~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-------------------~i~~l~~L~~L~l~~c~~l~~-------  139 (463)
                      +| .+..+|. ++.+++|+.|+++++.+...+.                   .+..++.++.|++.++.....       
T Consensus       107 ~n-~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~  184 (353)
T d1jl5a_         107 NN-QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL  184 (353)
T ss_dssp             SS-CCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             cc-ccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccc
Confidence            64 3455553 4556666666666654432221                   122334444444443321110       


Q ss_pred             ------------CcccCCCCCCccEEEeeCCCCCCcc-------------------------------------------
Q 012450          140 ------------LKLPFDGLYSLTYLYLTDCAITELP-------------------------------------------  164 (463)
Q Consensus       140 ------------l~~~l~~l~~L~~L~L~~~~l~~~p-------------------------------------------  164 (463)
                                  ++ ....++.|+.+++++|....++                                           
T Consensus       185 ~~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~  263 (353)
T d1jl5a_         185 ESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP  263 (353)
T ss_dssp             CEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                        11 1223344444444443221111                                           


Q ss_pred             --------------cccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCcccccc
Q 012450          165 --------------ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLES  230 (463)
Q Consensus       165 --------------~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~  230 (463)
                                    .....+++|++|+|++|+++.+|..   +++|+.|++++| .++++|+.+.+|+.|++++|+ |+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-L~~  338 (353)
T d1jl5a_         264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LRE  338 (353)
T ss_dssp             TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSS
T ss_pred             chhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCC-cCCccccccCCCCEEECcCCc-CCC
Confidence                          0112346899999999999888853   578889999888 578888888899999999886 888


Q ss_pred             cccCCCCceeE
Q 012450          231 LSGLFSSYKCV  241 (463)
Q Consensus       231 l~~~~~~~~~~  241 (463)
                      +|.....+..+
T Consensus       339 lp~~~~~L~~L  349 (353)
T d1jl5a_         339 FPDIPESVEDL  349 (353)
T ss_dssp             CCCCCTTCCEE
T ss_pred             CCccccccCee
Confidence            87655544443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=3.6e-15  Score=144.20  Aligned_cols=203  Identities=24%  Similarity=0.291  Sum_probs=144.3

Q ss_pred             CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450            4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   83 (463)
Q Consensus         4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   83 (463)
                      .++|++|+|++ +.++++  |..   +.+|+.|++++| .++.++.+  .+.|++|++++|.++.+|. ++.+++|++|+
T Consensus        57 ~~~L~~L~Ls~-N~l~~l--p~~---~~~L~~L~l~~n-~l~~l~~l--p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_          57 PPHLESLVASC-NSLTEL--PEL---PQSLKSLLVDNN-NLKALSDL--PPLLEYLGVSNNQLEKLPE-LQNSSFLKIID  126 (353)
T ss_dssp             CTTCSEEECCS-SCCSSC--CCC---CTTCCEEECCSS-CCSCCCSC--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEE
T ss_pred             CCCCCEEECCC-CCCccc--ccc---hhhhhhhhhhhc-ccchhhhh--ccccccccccccccccccc-hhhhccceeec
Confidence            47899999997 678888  554   457888888885 56666653  2468999999998888885 57888899998


Q ss_pred             eecCCCCCc------------------cchhcCCCCCCcEEEEECCCCccCC-------------------ccCCCCCCc
Q 012450           84 LGDCKNLKT------------------LPSSLCKLKSLEEICLTGSAIEELP-------------------SPIECLSAL  126 (463)
Q Consensus        84 l~~c~~l~~------------------lp~~l~~l~~L~~L~l~~~~i~~lp-------------------~~i~~l~~L  126 (463)
                      ++++.....                  ....+..++.++.|.+.++....++                   .....++.|
T Consensus       127 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L  206 (353)
T d1jl5a_         127 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL  206 (353)
T ss_dssp             CCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred             cccccccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccccccc
Confidence            887643211                  0122344566677777665443221                   123456677


Q ss_pred             cEEecCCCCCCCc------------------------------------------Cc--------------ccCCCCCCc
Q 012450          127 CVLDLGDCKSLKS------------------------------------------LK--------------LPFDGLYSL  150 (463)
Q Consensus       127 ~~L~l~~c~~l~~------------------------------------------l~--------------~~l~~l~~L  150 (463)
                      +.+++++|.....                                          ++              .....+++|
T Consensus       207 ~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L  286 (353)
T d1jl5a_         207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL  286 (353)
T ss_dssp             CEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCC
Confidence            7777665432110                                          00              001224689


Q ss_pred             cEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccEeecc
Q 012450          151 TYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQ  223 (463)
Q Consensus       151 ~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~  223 (463)
                      ++|+|++|+++.+|.   .+++|+.|+|++|+++.+|..   +++|++|++++|+ ++.+|.+|.+|+.|.+.
T Consensus       287 ~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         287 EELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNP-LREFPDIPESVEDLRMN  352 (353)
T ss_dssp             CEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred             CEEECCCCccCcccc---ccCCCCEEECCCCcCCccccc---cCCCCEEECcCCc-CCCCCccccccCeeECc
Confidence            999999999999985   467899999999999999853   5689999999996 99999999999998774

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.5e-15  Score=136.76  Aligned_cols=217  Identities=23%  Similarity=0.326  Sum_probs=161.2

Q ss_pred             ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCc-cCc-cccCCCCccEEe
Q 012450            8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEE-LPS-SIGCLSRLLELN   83 (463)
Q Consensus         8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~-lp~-~i~~l~~L~~L~   83 (463)
                      +.++.++ ..++++  |..+.  +++++|++++| .++.+|.  +..+++|++|++++|.+.. ++. .+..+++++++.
T Consensus        11 ~~i~c~~-~~l~~i--P~~l~--~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQE-SKVTEI--PSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEES-CSCSSC--CSCSC--SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeC-CCCCCc--CCCCC--CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            5666766 568888  55543  58999999995 6788876  7899999999999998874 443 478899999999


Q ss_pred             eecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCc-ccCCCC-CCccEEEeeCC
Q 012450           84 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLK-LPFDGL-YSLTYLYLTDC  158 (463)
Q Consensus        84 l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l-~~L~~L~L~~~  158 (463)
                      +..++.+...+ ..+.++++|++|+++++.+...+.  .+..+..+..+...++. +..++ ..+.++ ..++.|++++|
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSS
T ss_pred             ccccccccccccccccccccccccccchhhhcccccccccccccccccccccccc-cccccccccccccccceeeecccc
Confidence            98877776655 557899999999999999987654  23344555555555443 45443 234444 37889999999


Q ss_pred             CCCCcccccCCccccccc-ccccccccccch-hhhCCCCccEeccccccccccCCC-CCCCccEeeccCcccccccc
Q 012450          159 AITELPESLGLLSSLEEL-YLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLS  232 (463)
Q Consensus       159 ~l~~~p~~l~~l~~L~~L-~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~c~~L~~l~  232 (463)
                      +++.++..+...++++++ .+++|.++.+|. .+.++++|+.|++++|+ ++.+|. .+.++..|..-++.+|+.+|
T Consensus       164 ~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         164 GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESSSCSC
T ss_pred             cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCCCcCC
Confidence            999987776677776666 567788999985 46889999999999985 677765 45666666666666666555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-13  Score=126.20  Aligned_cols=201  Identities=15%  Similarity=0.159  Sum_probs=147.4

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeec-cCCCccC-ccccCCCCcc
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG-TAIEELP-SSIGCLSRLL   80 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~   80 (463)
                      +++++|+|++ +.++.++ +..+.++++|++|++++|.....++.  +..+++++++.+.. +.+..++ ..+..+++|+
T Consensus        29 ~~l~~L~Ls~-n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVL-TKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEES-CCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCEEECcC-CcCCccC-hhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            4899999999 5678874 44688999999999999877666655  77899999999876 5777555 4478999999


Q ss_pred             EEeeecCCCCCccch--hcCCCCCCcEEEEECCCCccCCc-cCCCC-CCccEEecCCCCCCCcCcccCCCCCCccEEE-e
Q 012450           81 ELNLGDCKNLKTLPS--SLCKLKSLEEICLTGSAIEELPS-PIECL-SALCVLDLGDCKSLKSLKLPFDGLYSLTYLY-L  155 (463)
Q Consensus        81 ~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~~~i~~lp~-~i~~l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~-L  155 (463)
                      .|+++++. +...+.  .+..+..+..+...++.+..++. .+..+ ..++.|+++++. ++.++......++++.+. +
T Consensus       107 ~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~~~~~~~l~~~~~l  184 (242)
T d1xwdc1         107 YLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNCAFNGTQLDELNLS  184 (242)
T ss_dssp             EEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTTTTTCCEEEEECT
T ss_pred             ccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccccc-ccccccccccchhhhccccc
Confidence            99999974 444442  23345555566667777777754 34444 478899998765 566666555666666664 5


Q ss_pred             eCCCCCCcccc-cCCcccccccccccccccccch-hhhCCCCccEeccccccccccCCC
Q 012450          156 TDCAITELPES-LGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPK  212 (463)
Q Consensus       156 ~~~~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~  212 (463)
                      ++|+++++|.. +.++++|+.|+|++|+++.+|. .+.++++|+.|++.+   ++.+|.
T Consensus       185 ~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~---l~~lp~  240 (242)
T d1xwdc1         185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT  240 (242)
T ss_dssp             TCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES---SSCSCC
T ss_pred             cccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC---CCcCCC
Confidence            77789998765 6889999999999999999875 356666666666554   445543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.5e-15  Score=139.99  Aligned_cols=175  Identities=21%  Similarity=0.229  Sum_probs=120.9

Q ss_pred             CCCCCCccEEEeeccCCC--ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECC-CCcc--CCccCCCCC
Q 012450           50 ISSAGNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIEE--LPSPIECLS  124 (463)
Q Consensus        50 l~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~--lp~~i~~l~  124 (463)
                      .....+|++|+++++.++  .+...+..+++|++|++++|......+..+..+++|++|+++++ .++.  +......++
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            445668888998888776  34555778888999999888654455667788888999999885 4542  233345678


Q ss_pred             CccEEecCCCCCCCcC--cccC-CCCCCccEEEeeCCC--CCC--cccccCCccccccccccccc-cc-ccchhhhCCCC
Q 012450          125 ALCVLDLGDCKSLKSL--KLPF-DGLYSLTYLYLTDCA--ITE--LPESLGLLSSLEELYLERNN-FE-RIPESIIRLSK  195 (463)
Q Consensus       125 ~L~~L~l~~c~~l~~l--~~~l-~~l~~L~~L~L~~~~--l~~--~p~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~  195 (463)
                      +|++|++++|..+++-  ...+ ...++|+.|++++|.  +++  +...+.++++|++|++++|. ++ .....+.++++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            8999999888766542  1112 234678899988763  443  44445678889999998875 54 34456778889


Q ss_pred             ccEecccccccccc-----CCCCCCCccEeeccCc
Q 012450          196 LSSLLVSYCERLQS-----LPKLPCNLYWLDAQHC  225 (463)
Q Consensus       196 L~~L~L~~c~~l~~-----l~~l~~~L~~L~i~~c  225 (463)
                      |++|++++|..+++     +... ++|+.|++.+|
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~-~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTS
T ss_pred             CCEEECCCCCCCChHHHHHHhcC-CCCCEEeeeCC
Confidence            99999998876542     2222 46777777666

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-15  Score=143.01  Aligned_cols=204  Identities=19%  Similarity=0.234  Sum_probs=135.9

Q ss_pred             ccCCcCccEEeeecCCCCCC-CCC-CCCCCCccEEEeeccCCC-ccCccccCCCCccEEeeecCCCCCc--cchhcCCCC
Q 012450           27 IQHLNKLVILNLSGCSKLKS-LPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKT--LPSSLCKLK  101 (463)
Q Consensus        27 ~~~l~~L~~L~L~~c~~l~~-lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~--lp~~l~~l~  101 (463)
                      .....+|++|++++|..... ++. +..+++|++|+++++.++ ..+..+..+++|++|++++|..++.  +...+.+++
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            33567899999988743322 233 677889999999998877 4556677889999999999887764  233345688


Q ss_pred             CCcEEEEECCC-Cc--cCCccCC-CCCCccEEecCCCC-CCCc--CcccCCCCCCccEEEeeCCC-CCC-cccccCCccc
Q 012450          102 SLEEICLTGSA-IE--ELPSPIE-CLSALCVLDLGDCK-SLKS--LKLPFDGLYSLTYLYLTDCA-ITE-LPESLGLLSS  172 (463)
Q Consensus       102 ~L~~L~l~~~~-i~--~lp~~i~-~l~~L~~L~l~~c~-~l~~--l~~~l~~l~~L~~L~L~~~~-l~~-~p~~l~~l~~  172 (463)
                      +|++|++++|. ++  .+...+. ..++|+.|++++|. .++.  +.....++++|++|++++|. +++ .+..+..+++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            99999998863 33  1222222 34689999998874 2332  33334567889999999875 554 5566778899


Q ss_pred             cccccccccc-cc-ccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCccccccc
Q 012450          173 LEELYLERNN-FE-RIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL  231 (463)
Q Consensus       173 L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~l  231 (463)
                      |++|++++|. ++ .....+.++++|+.|++++|-.-..+..+...+..|.+ +|..++.+
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i-~~~~ls~~  261 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTI  261 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEE-SCCCSCCT
T ss_pred             CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccccc-cCccCCCC
Confidence            9999999974 54 23345778899999999988332233322223333444 45555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=3e-13  Score=120.09  Aligned_cols=125  Identities=23%  Similarity=0.319  Sum_probs=75.6

Q ss_pred             cEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCc-cC-ccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450           34 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEE-LP-SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG  110 (463)
Q Consensus        34 ~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~-lp-~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  110 (463)
                      +.++.++ +.++.+|. +  .+++++|+|++|.|+. ++ ..+..+++|+.|++++|......+..+..+++|+.|++++
T Consensus        11 ~~v~Cs~-~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTG-RGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTT-SCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeC-CCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3555555 45666665 3  2567777777777753 32 2356677777777776655545555666677777777777


Q ss_pred             CCCccCCc-cCCCCCCccEEecCCCCCCCcC-cccCCCCCCccEEEeeCCCCCC
Q 012450          111 SAIEELPS-PIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITE  162 (463)
Q Consensus       111 ~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~L~~~~l~~  162 (463)
                      |.++.+|+ .+.++++|++|+|++|. ++.+ +..+..+++|++|+|++|.+..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccccc
Confidence            77776654 35566666666666655 3333 3335566666666666665544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=117.78  Aligned_cols=123  Identities=23%  Similarity=0.247  Sum_probs=58.8

Q ss_pred             CCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCccc-CCCCCCccEEE
Q 012450           76 LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLY  154 (463)
Q Consensus        76 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~  154 (463)
                      +.+|++|++++| .++.++..+..+++|+.|++++|.++.++ .+..+++|++|++++|. ++.++.. +..+++|+.|+
T Consensus        17 ~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCC-CCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccccce
Confidence            334444444443 23333333333444444444444444442 24444444444444444 2333222 23455566666


Q ss_pred             eeCCCCCCccc--ccCCcccccccccccccccccch----hhhCCCCccEecc
Q 012450          155 LTDCAITELPE--SLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLV  201 (463)
Q Consensus       155 L~~~~l~~~p~--~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L  201 (463)
                      +++|.+.+++.  .+..+++|++|++++|.++..|.    .+..+++|+.||-
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            66665555432  34556666666666666655442    3455666666553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=6.1e-13  Score=118.06  Aligned_cols=127  Identities=27%  Similarity=0.300  Sum_probs=103.6

Q ss_pred             ccEEEeeccCCCccCccccCCCCccEEeeecCCCCCcc-chhcCCCCCCcEEEEECCCCccCC-ccCCCCCCccEEecCC
Q 012450           56 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGD  133 (463)
Q Consensus        56 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~  133 (463)
                      .+.++.++++++++|..+.  +++++|+|++|.....+ +..+.++++|+.|++++|.+..++ ..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4578888999999998764  78999999997654444 455788999999999999998764 4677899999999999


Q ss_pred             CCCCCcCc-ccCCCCCCccEEEeeCCCCCCcc-cccCCcccccccccccccccc
Q 012450          134 CKSLKSLK-LPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFER  185 (463)
Q Consensus       134 c~~l~~l~-~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~  185 (463)
                      |. ++.++ ..+.++++|+.|+|++|+++.+| ..+..+++|++|+|++|.+..
T Consensus        88 N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cc-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            86 55554 45788999999999999999865 457789999999999998764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=7.5e-13  Score=108.89  Aligned_cols=101  Identities=23%  Similarity=0.265  Sum_probs=52.3

Q ss_pred             cEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCC
Q 012450           57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKS  136 (463)
Q Consensus        57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~  136 (463)
                      |.|++++|.++.++. ++.+++|++|++++| .++.+|..++.+++|+.|++++|.++.+|                   
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-------------------   59 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-------------------   59 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-------------------
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccC-------------------
Confidence            345555555555543 455555555555553 33445544555555555555555444443                   


Q ss_pred             CCcCcccCCCCCCccEEEeeCCCCCCcc--cccCCccccccccccccccc
Q 012450          137 LKSLKLPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFE  184 (463)
Q Consensus       137 l~~l~~~l~~l~~L~~L~L~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~  184 (463)
                           . +..+++|+.|++++|.+.+++  ..+..+++|+.|++++|+++
T Consensus        60 -----~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          60 -----G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             -----G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             -----c-cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence                 2 344455555555555555443  23455566666666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.5e-13  Score=114.24  Aligned_cols=124  Identities=19%  Similarity=0.215  Sum_probs=66.7

Q ss_pred             ccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchh-cCCCCCCc
Q 012450           27 IQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLE  104 (463)
Q Consensus        27 ~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~  104 (463)
                      +.++.+|++|+|++| .++.++. +..+++|+.|++++|.|++++ .+..+++|++|++++|. +..++.. +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCC-CCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            334555666666653 4555555 344556666666666666553 25556666666666643 3444332 33456666


Q ss_pred             EEEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCcc----cCCCCCCccEEE
Q 012450          105 EICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKL----PFDGLYSLTYLY  154 (463)
Q Consensus       105 ~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~~----~l~~l~~L~~L~  154 (463)
                      +|++++|.++.++.  .+..+++|++|++++|+ +...+.    .+..+++|+.|+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            66666666655542  34555666666666654 333332    244556666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1e-12  Score=108.08  Aligned_cols=99  Identities=20%  Similarity=0.327  Sum_probs=83.1

Q ss_pred             cEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCC
Q 012450           34 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI  113 (463)
Q Consensus        34 ~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i  113 (463)
                      |+|+|++ +.++.++.++.+++|++|++++|.|+++|..++.+++|+.|++++| .++.+| .+..+++|++|++++|.+
T Consensus         1 R~L~Ls~-n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAH-KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTT-SCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCC-CCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCCcc
Confidence            5799999 4788898899999999999999999999999999999999999996 567776 488999999999999999


Q ss_pred             ccCCc--cCCCCCCccEEecCCCC
Q 012450          114 EELPS--PIECLSALCVLDLGDCK  135 (463)
Q Consensus       114 ~~lp~--~i~~l~~L~~L~l~~c~  135 (463)
                      +.++.  .+..+++|+.|++++|+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCc
Confidence            87763  34555566666665554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=2.8e-14  Score=127.69  Aligned_cols=110  Identities=23%  Similarity=0.350  Sum_probs=54.6

Q ss_pred             cchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCccc
Q 012450           93 LPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSS  172 (463)
Q Consensus        93 lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~  172 (463)
                      ++..+..+++|++|++++|.|+.++ .+..+++|+.|++++|. ++.++.....+++|+.|++++|.++.++ .+..+++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~  116 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN  116 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-cccccccccccccccccccccccccccc-ccccccc
Confidence            3334444444444444444444443 23444444444444443 3333332223345556666666555543 2455566


Q ss_pred             ccccccccccccccc--hhhhCCCCccEecccccc
Q 012450          173 LEELYLERNNFERIP--ESIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       173 L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~  205 (463)
                      |+.|++++|+++.++  ..+..+++|+.|++++|+
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCc
Confidence            666666666665554  245556666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=5.5e-13  Score=119.04  Aligned_cols=129  Identities=24%  Similarity=0.329  Sum_probs=108.0

Q ss_pred             CCccEEEeecc--CCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEec
Q 012450           54 GNIEKILLDGT--AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL  131 (463)
Q Consensus        54 ~~L~~L~L~~~--~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  131 (463)
                      ..++.+.+.+.  .++.++.++..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.+|.....+++|+.|++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcc-cccCCccccChhhccccccccccccccccccccccc
Confidence            34566777764  677888899999999999999964 66775 588899999999999999999876666778999999


Q ss_pred             CCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc--cccCCccccccccccccccccc
Q 012450          132 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERI  186 (463)
Q Consensus       132 ~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~~l  186 (463)
                      ++|. ++.++. +..+++|+.|++++|.+++++  ..+..+++|+.|++++|.+...
T Consensus       101 ~~N~-i~~l~~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         101 SYNQ-IASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEE-CCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccc-cccccc-ccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            9985 666654 778899999999999999876  4688999999999999987543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.03  E-value=1e-11  Score=120.11  Aligned_cols=84  Identities=20%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             CCCCcEEEEECCCCc-----cCCccCCCCCCccEEecCCCCCCCc-----CcccCCCCCCccEEEeeCCCCCC-----cc
Q 012450          100 LKSLEEICLTGSAIE-----ELPSPIECLSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE-----LP  164 (463)
Q Consensus       100 l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~L~~~~l~~-----~p  164 (463)
                      .+.|+.|.++++.++     .+...+...++|+.|++++|..-..     +...+...++|+.|++++|.+..     +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            445555555555443     1222233444555555555442110     11123344555555555555432     22


Q ss_pred             cccCCcccccccccccccc
Q 012450          165 ESLGLLSSLEELYLERNNF  183 (463)
Q Consensus       165 ~~l~~l~~L~~L~Ls~n~l  183 (463)
                      ..+..+++|++|+|++|.+
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCC
T ss_pred             ccccccccchhhhhhcCcc
Confidence            3344455555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.5e-10  Score=96.39  Aligned_cols=103  Identities=18%  Similarity=0.208  Sum_probs=62.3

Q ss_pred             CCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCCCc-ccccCCcccccccccc
Q 012450          102 SLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLE  179 (463)
Q Consensus       102 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls  179 (463)
                      ..+.++.+++.+.++|..+..+++|++|++.+++.++.++. .+.++++|+.|+|++|+++.+ +..+..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34445555555555565566666666666665555555543 356666666666666666665 3445666666777777


Q ss_pred             cccccccchhhhCCCCccEeccccc
Q 012450          180 RNNFERIPESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       180 ~n~l~~lp~~l~~l~~L~~L~L~~c  204 (463)
                      +|+++.+|..+....+|+.|+|++|
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CCCCcccChhhhccccccccccCCC
Confidence            7666666655444445666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=9.5e-10  Score=93.64  Aligned_cols=104  Identities=18%  Similarity=0.153  Sum_probs=55.0

Q ss_pred             ccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCC
Q 012450           56 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGD  133 (463)
Q Consensus        56 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~  133 (463)
                      .+.++..++.+.++|..+..+++|++|++.+++.++.++ ..|.++++|+.|++++|.++.+++ .+..+++|++|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            344555555555555555566666666665555555554 335566666666666666665532 344455555555554


Q ss_pred             CCCCCcCcccCCCCCCccEEEeeCCCC
Q 012450          134 CKSLKSLKLPFDGLYSLTYLYLTDCAI  160 (463)
Q Consensus       134 c~~l~~l~~~l~~l~~L~~L~L~~~~l  160 (463)
                      |. ++.+|.......+|+.|+|++|.+
T Consensus        90 N~-l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NA-LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CC-CcccChhhhccccccccccCCCcc
Confidence            44 334443333333455555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.93  E-value=9.7e-11  Score=113.06  Aligned_cols=129  Identities=19%  Similarity=0.238  Sum_probs=89.3

Q ss_pred             CCCccEEeeecCCCCC----ccchhcCCCCCCcEEEEECCCCcc------CCccCCCCCCccEEecCCCCCCCc-----C
Q 012450           76 LSRLLELNLGDCKNLK----TLPSSLCKLKSLEEICLTGSAIEE------LPSPIECLSALCVLDLGDCKSLKS-----L  140 (463)
Q Consensus        76 l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~------lp~~i~~l~~L~~L~l~~c~~l~~-----l  140 (463)
                      .+.|+.|.++++....    .+...+...++|+.|++++|.+..      +...+..+++|+.|++++|. ++.     +
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L  235 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL  235 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-ccccccccc
Confidence            3445555555432211    223345567899999999999863      33456788999999999986 322     3


Q ss_pred             cccCCCCCCccEEEeeCCCCCC-----cccccC--Cccccccccccccccc-----ccchhhh-CCCCccEecccccc
Q 012450          141 KLPFDGLYSLTYLYLTDCAITE-----LPESLG--LLSSLEELYLERNNFE-----RIPESII-RLSKLSSLLVSYCE  205 (463)
Q Consensus       141 ~~~l~~l~~L~~L~L~~~~l~~-----~p~~l~--~l~~L~~L~Ls~n~l~-----~lp~~l~-~l~~L~~L~L~~c~  205 (463)
                      ...+..+++|++|+|++|.+.+     +-..+.  ..+.|++|++++|+++     .+...+. +++.|+.|+|++|.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            3446778999999999999876     222333  3467999999999875     2445553 57889999998874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.4e-11  Score=118.79  Aligned_cols=77  Identities=23%  Similarity=0.313  Sum_probs=51.5

Q ss_pred             CCccEEEeeCCCCCC-----cccccCCccccccccccccccc-----ccchhhh-CCCCccEecccccccccc-----CC
Q 012450          148 YSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----RIPESII-RLSKLSSLLVSYCERLQS-----LP  211 (463)
Q Consensus       148 ~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~-~l~~L~~L~L~~c~~l~~-----l~  211 (463)
                      ..|+.+++++|.+..     +...+...++|++|+|++|.++     .++..+. ..+.|+.|+|++|. ++.     +.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~  390 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA  390 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHH
Confidence            456777777776654     1223345568999999999885     3444554 46789999999994 432     22


Q ss_pred             C---CCCCccEeeccCc
Q 012450          212 K---LPCNLYWLDAQHC  225 (463)
Q Consensus       212 ~---l~~~L~~L~i~~c  225 (463)
                      .   -.++|++|++++.
T Consensus       391 ~~l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNN  407 (460)
T ss_dssp             HHHHHCCCCCEEECCSS
T ss_pred             HHHhcCCCCCEEECCCC
Confidence            1   1267999999876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.3e-08  Score=97.45  Aligned_cols=107  Identities=16%  Similarity=0.334  Sum_probs=79.5

Q ss_pred             CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCC-----CCC-CCCCCCccEEEeeccCCCc-----cCccc
Q 012450            5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS-----LPE-ISSAGNIEKILLDGTAIEE-----LPSSI   73 (463)
Q Consensus         5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----lp~-l~~l~~L~~L~L~~~~i~~-----lp~~i   73 (463)
                      ++|++||+++ +.+++..+...+..+++|++|+|++|. ++.     ++. +..+++|++|+|++|.|+.     +...+
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            5799999976 677664334556778999999999984 442     222 5678999999999998862     22233


Q ss_pred             c-CCCCccEEeeecCCCCCc-----cchhcCCCCCCcEEEEECCCCc
Q 012450           74 G-CLSRLLELNLGDCKNLKT-----LPSSLCKLKSLEEICLTGSAIE  114 (463)
Q Consensus        74 ~-~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~~~i~  114 (463)
                      . ...+|++|++++|. ++.     ++..+..+++|++|++++|.+.
T Consensus        80 ~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence            2 23579999999985 432     4567788999999999998764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=9.7e-07  Score=74.88  Aligned_cols=29  Identities=17%  Similarity=0.151  Sum_probs=14.9

Q ss_pred             CccEEEeeCCCCCCcc--------cccCCcccccccc
Q 012450          149 SLTYLYLTDCAITELP--------ESLGLLSSLEELY  177 (463)
Q Consensus       149 ~L~~L~L~~~~l~~~p--------~~l~~l~~L~~L~  177 (463)
                      .|+.|++++|++....        ..+..+|+|+.||
T Consensus       116 ~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         116 KLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            4555555555554311        2245566666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=3.6e-05  Score=64.76  Aligned_cols=60  Identities=22%  Similarity=0.191  Sum_probs=31.4

Q ss_pred             CCCCccEEEeeCCCCCCc---ccccCCcccccccccccccccccch-hhhCCCCccEecccccc
Q 012450          146 GLYSLTYLYLTDCAITEL---PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE  205 (463)
Q Consensus       146 ~l~~L~~L~L~~~~l~~~---p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~  205 (463)
                      .+++|+.|+|++|.++.+   +..+..+++|+.|+|++|+++++++ ...+..+|+.|++++|+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            345555555565555543   2233455666666666666655543 11223356666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.25  E-value=5.1e-05  Score=64.16  Aligned_cols=36  Identities=22%  Similarity=0.131  Sum_probs=18.1

Q ss_pred             CCCccEEEeeCCCCCC-----cccccCCccccccccccccc
Q 012450          147 LYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNN  182 (463)
Q Consensus       147 l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~  182 (463)
                      .++|+.|+|++|.+.+     +-..+...++|++|++++|.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            3455555555555543     22334444555555555553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.90  E-value=0.00019  Score=60.47  Aligned_cols=83  Identities=18%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             CCCCccEEecCCCCCCCc-----CcccCCCCCCccEEEeeCCCCCC-----cccccCCccccccccccccccc-----cc
Q 012450          122 CLSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----RI  186 (463)
Q Consensus       122 ~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~-----~l  186 (463)
                      +.++|++|+++++..++.     +-..+...++|+.|+|++|.+.+     +...+...+.|++|+|++|.++     .+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            345677777766543432     22235566788899999988764     3344566788999999999885     24


Q ss_pred             chhhhCCCCccEeccccc
Q 012450          187 PESIIRLSKLSSLLVSYC  204 (463)
Q Consensus       187 p~~l~~l~~L~~L~L~~c  204 (463)
                      -..+...+.|++|++++|
T Consensus        93 ~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCC
Confidence            456777888999999887

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.52  E-value=0.00029  Score=59.07  Aligned_cols=57  Identities=21%  Similarity=0.204  Sum_probs=26.6

Q ss_pred             CCCccEEEeeCCCCCC-----cccccCCccccccccc--cccccc-----ccchhhhCCCCccEecccc
Q 012450          147 LYSLTYLYLTDCAITE-----LPESLGLLSSLEELYL--ERNNFE-----RIPESIIRLSKLSSLLVSY  203 (463)
Q Consensus       147 l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~L--s~n~l~-----~lp~~l~~l~~L~~L~L~~  203 (463)
                      .++++.+++++|.+.+     +...+...++|+.++|  ++|.+.     .+...+...+.|+.|+++.
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            3455555555555443     2234445555554333  333442     2334444555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.41  E-value=0.00034  Score=58.66  Aligned_cols=108  Identities=16%  Similarity=0.128  Sum_probs=53.9

Q ss_pred             CCCCccEEeeecCCCCC-----ccchhcCCCCCCcEEEEECCCCc-----cCCccCCCCCCccEEecCCCCCCCc----C
Q 012450           75 CLSRLLELNLGDCKNLK-----TLPSSLCKLKSLEEICLTGSAIE-----ELPSPIECLSALCVLDLGDCKSLKS----L  140 (463)
Q Consensus        75 ~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~----l  140 (463)
                      +.++|++|+++++..++     .+-..+...++|++|++++|.++     .+-..+...++++.+++++|..-..    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            34555555555433332     12233445555666666655543     1222233455666666665542111    2


Q ss_pred             cccCCCCCCccEEEee--CCCCCC-----cccccCCccccccccccccc
Q 012450          141 KLPFDGLYSLTYLYLT--DCAITE-----LPESLGLLSSLEELYLERNN  182 (463)
Q Consensus       141 ~~~l~~l~~L~~L~L~--~~~l~~-----~p~~l~~l~~L~~L~Ls~n~  182 (463)
                      ...+...++|+.++|+  ++.+.+     +...+...++|++|++..+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            2234555667665554  334433     34445567777888776654