Citrus Sinensis ID: 012457

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEACGSHCLLCQPVHA
ccHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHcccEEccEEEEEcccEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEccccccEEEEEEEEEccccccccccccEEEEEcccc
ccHHHHHHHHHHccccccHHHHccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcccccccHcHHHHHHHHHHccccccHHHHHHHHHcccccccHHHccccccccccccccccccccEEEEcccccccEEEccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHEHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHccccccccEEEcccEEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEEcccHEEEEEEEEEEccccccccccccEEEEccccc
MASRKLVRDLFlsrqrprflqltplqgsstRLRLVsangyssnrqfSVFKEFSKKIkgeaesnpefKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVkgtfrtgstdtsakhdddvrdgfkassgeekqkqtvssDTAETFYGKlkssisspKFTLAFQKLKEAKVVDLAKKGYDivkdelsgspskrkhleytpspswtgekstrtdlvvtpskKSMWSKLKEKmqgypvfkritgisepvvtkgQEIAEDVRERwetsdnpivhKIQDMNETIFQETDAAASIKEirrrdpsfslpdfVSEVQEAIRPVLSAYMKGDVEtlkkycspeviERCKAEHTAYqshgiffdnrilhvSEVEVRetkmmgssPIIIVAFQTQQiycvrdkhgtiteggkvnntallfpecghlplneacgshcllcqpvha
masrklvrdlflsrqrprflqltplqgsstrlRLVSangyssnrqfsvFKEFSKKikgeaesnpefkhsvkELKKKAEeikgvkeelkertkqtteqlykqvdgvWMEAESTVKKVSASMKEKISaateevkgtfrtgstdtsakhdddvrdgfkassgeekqkqtvssdtaETFYGklkssisspKFTLAFQKLKEAKVVDLAKKGYDIVkdelsgspskrkhleytpspswtgekstrtdlvvtpskksmwskLKEKMQGYPVfkritgisepvvtkgqeIAEDVrerwetsdnpivHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYqshgiffdnriLHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEACGSHCLLCQPVHA
MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEACGSHCLLCQPVHA
**********F*******FL********************************************************************************QVDGVWM*******************************************************************************KFTLAFQKLKEAKVVDLAKKGYDIV************************************************MQGYPVFKRITGISEPVVTKGQEIAEDVRERWET*DNPIVHKIQDMNETIFQ******************SLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEACGSHCLLCQ****
******V*DLFLSRQRP********************************KEFSK*********************************************************************ISAATEEVKGTFRTG*******************************************************************************************************************************************************RWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEACGSHCLLCQPV**
MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGF****************TAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEACGSHCLLCQPVHA
*****LVRDLFLSRQRPRFL************R********SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDT**KH*DD*RDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVV***************************************TDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEACGSHCLLCQPV**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
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MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSxxxxxxxxxxxxxxxxxxxxxxxxxxxxLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEACGSHCLLCQPVHA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
Q5XF06469 Mitochondrial import inne yes no 0.911 0.899 0.639 1e-160
Q1PF33474 Mitochondrial import inne no no 0.917 0.896 0.601 1e-149
O43615452 Mitochondrial import inne yes no 0.311 0.318 0.276 4e-14
Q01852431 Mitochondrial import inne yes no 0.308 0.331 0.306 6e-14
O35094453 Mitochondrial import inne yes no 0.311 0.317 0.263 1e-13
O35857452 Mitochondrial import inne yes no 0.339 0.347 0.257 2e-13
O60084427 Mitochondrial import inne yes no 0.295 0.320 0.292 3e-13
O02161425 Probable mitochondrial im yes no 0.319 0.348 0.253 2e-08
>sp|Q5XF06|TI442_ARATH Mitochondrial import inner membrane translocase subunit TIM44-2 OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  563 bits (1452), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 278/435 (63%), Positives = 351/435 (80%), Gaps = 13/435 (2%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
           MASRKLVRDL +++Q P   QL   +    RL L+  NG++S+R+FSVF EFSKKI+GEA
Sbjct: 1   MASRKLVRDLLITKQ-PLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEA 59

Query: 61  ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
           +SNPEF+ +VKE K++AEE++GVKE+LK RTKQTTE+LYKQ  GVW EAES  KKVS+S+
Sbjct: 60  DSNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119

Query: 121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
           K+K SAATEEVK +F+ G  +++         G   + GE++Q+Q+ S++  +TF+GK K
Sbjct: 120 KDKFSAATEEVKESFKLGKEESAESA---SSSGTGTTEGEKQQQQSGSTEEQDTFFGKFK 176

Query: 181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
           SSISSPK + AF K      +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+STR
Sbjct: 177 SSISSPKLSEAFHK-----PLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTR 231

Query: 241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
           T++V+ P+K+S W K    L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSDN
Sbjct: 232 TEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDN 291

Query: 297 PIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVET 356
           PIVHKIQDMNE IF+ET +A++ KEIRRRDPSFSLPDFVSE+QEAIRPVL+AY KGD +T
Sbjct: 292 PIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAKT 351

Query: 357 LKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQI 416
           LKKYCS E+IERC AEH A+ S G FFD+++LHVSEV+++ETKMMG++P+IIV FQTQ+I
Sbjct: 352 LKKYCSKELIERCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEI 411

Query: 417 YCVRDKHGTITEGGK 431
           +CVRD+ G I EGG+
Sbjct: 412 FCVRDQDGKIKEGGQ 426
Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. Recruits mitochondrial HSP70 to drive protein translocation into the matrix using ATP as an energy source.
Arabidopsis thaliana (taxid: 3702)
>sp|Q1PF33|TI441_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1 OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1 Back     alignment and function description
>sp|O43615|TIM44_HUMAN Mitochondrial import inner membrane translocase subunit TIM44 OS=Homo sapiens GN=TIMM44 PE=1 SV=2 Back     alignment and function description
>sp|Q01852|TIM44_YEAST Mitochondrial import inner membrane translocase subunit TIM44 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM44 PE=1 SV=1 Back     alignment and function description
>sp|O35094|TIM44_RAT Mitochondrial import inner membrane translocase subunit TIM44 OS=Rattus norvegicus GN=Timm44 PE=2 SV=1 Back     alignment and function description
>sp|O35857|TIM44_MOUSE Mitochondrial import inner membrane translocase subunit TIM44 OS=Mus musculus GN=Timm44 PE=2 SV=2 Back     alignment and function description
>sp|O60084|TIM44_SCHPO Mitochondrial import inner membrane translocase subunit tim44 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim44 PE=3 SV=1 Back     alignment and function description
>sp|O02161|TIM44_CAEEL Probable mitochondrial import inner membrane translocase subunit tim-44 OS=Caenorhabditis elegans GN=tim-44 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
225438141485 PREDICTED: mitochondrial import inner me 0.928 0.886 0.708 1e-174
224062145484 predicted protein [Populus trichocarpa] 0.928 0.888 0.690 1e-173
255567254486 mitochondrial import inner membrane tran 0.928 0.884 0.711 1e-172
297744147484 unnamed protein product [Vitis vinifera] 0.928 0.888 0.699 1e-170
224085633485 predicted protein [Populus trichocarpa] 0.928 0.886 0.677 1e-164
449526090484 PREDICTED: uncharacterized protein LOC10 0.928 0.888 0.662 1e-158
42569661469 translocase inner membrane subunit 44-2 0.911 0.899 0.639 1e-158
297827085469 attim44-2 [Arabidopsis lyrata subsp. lyr 0.911 0.899 0.639 1e-153
297836804477 mitochondrial import inner membrane tran 0.920 0.893 0.628 1e-152
18399377472 translocase inner membrane subunit 44-1 0.917 0.900 0.604 1e-148
>gi|225438141|ref|XP_002278528.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim44-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 314/443 (70%), Positives = 362/443 (81%), Gaps = 13/443 (2%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
           M SRKLVRDL+LS+Q      L+  Q SS RLRL+S NG S  R FSVF EFS KIKGE 
Sbjct: 1   MGSRKLVRDLYLSKQPLLLHLLSSQQASSARLRLISPNGCSGYRGFSVFNEFSNKIKGEV 60

Query: 61  ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
             N EF+ +VKELK+KAEE+KGVKEELK RTKQTTEQLYK VDGVW EAE+T KKVSA++
Sbjct: 61  NRNSEFQQTVKELKEKAEELKGVKEELKVRTKQTTEQLYKHVDGVWTEAEATAKKVSANV 120

Query: 121 KEKISAATEEVKGTFRTG------STDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAET 174
           KEKISAATE+VK TF  G      S  TSAK + DV  G  +SSGEEK  ++  SDTAET
Sbjct: 121 KEKISAATEDVKETFGKGKQEFSESAGTSAKSEADVNKG-SSSSGEEKHHKSGPSDTAET 179

Query: 175 FYGKLKSSIS--SPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPS 232
            +GK KSS+S  SPK +LAF+KLKEAKV+DLAKKGY IVKDELS +PSKRK ++   S +
Sbjct: 180 LFGKFKSSVSTVSPKVSLAFEKLKEAKVLDLAKKGYGIVKDELSSNPSKRKQMQRAASSA 239

Query: 233 WTGEKSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVR 288
             GE+ST+TD+V+ PSK+S WSK    LK+KMQG+PVFKRI+G+SEPVVTKGQE+AEDVR
Sbjct: 240 SPGERSTKTDIVIVPSKQSRWSKKWEALKDKMQGHPVFKRISGLSEPVVTKGQELAEDVR 299

Query: 289 ERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSA 348
           ERWETSDNP+VHKIQD+NE++F ET AA S KEIRRRDPSFSLPDFVSEVQE IRPVL+A
Sbjct: 300 ERWETSDNPVVHKIQDLNESVFGETAAAMSFKEIRRRDPSFSLPDFVSEVQEVIRPVLNA 359

Query: 349 YMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIII 408
           Y+KGD ETLKKYCSPEVIERCKAEH AYQ+ GI FDN+ILH+S+VEVRETKMMG+SPIII
Sbjct: 360 YIKGDAETLKKYCSPEVIERCKAEHGAYQTMGIIFDNKILHISDVEVRETKMMGTSPIII 419

Query: 409 VAFQTQQIYCVRDKHGTITEGGK 431
           VAFQTQQ+YCVR   G+I EGGK
Sbjct: 420 VAFQTQQVYCVRSADGSIKEGGK 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224062145|ref|XP_002300777.1| predicted protein [Populus trichocarpa] gi|222842503|gb|EEE80050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255567254|ref|XP_002524608.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis] gi|223536161|gb|EEF37816.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297744147|emb|CBI37117.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224085633|ref|XP_002307643.1| predicted protein [Populus trichocarpa] gi|222857092|gb|EEE94639.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449526090|ref|XP_004170047.1| PREDICTED: uncharacterized protein LOC101231997 [Cucumis sativus] Back     alignment and taxonomy information
>gi|42569661|ref|NP_181151.3| translocase inner membrane subunit 44-2 [Arabidopsis thaliana] gi|75110963|sp|Q5XF06.1|TI442_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44-2; Flags: Precursor gi|53828527|gb|AAU94373.1| At2g36070 [Arabidopsis thaliana] gi|330254108|gb|AEC09202.1| translocase inner membrane subunit 44-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827085|ref|XP_002881425.1| attim44-2 [Arabidopsis lyrata subsp. lyrata] gi|297327264|gb|EFH57684.1| attim44-2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297836804|ref|XP_002886284.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata] gi|297332124|gb|EFH62543.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18399377|ref|NP_565473.1| translocase inner membrane subunit 44-1 [Arabidopsis thaliana] gi|20198086|gb|AAD25651.2| putative mitochondrial inner membrane translocating protein [Arabidopsis thaliana] gi|330251926|gb|AEC07020.1| translocase inner membrane subunit 44-1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2039195469 TIM44-2 "AT2G36070" [Arabidops 0.911 0.899 0.639 2.8e-146
TAIR|locus:2054759474 TIM44-1 "translocase inner mem 0.917 0.896 0.606 9.5e-137
FB|FBgn0038683459 CG11779 [Drosophila melanogast 0.704 0.710 0.243 1.8e-18
UNIPROTKB|F1NU71447 TIMM44 "Uncharacterized protei 0.734 0.760 0.241 2.5e-16
SGD|S000001284431 TIM44 "Essential component of 0.358 0.385 0.293 1.7e-15
UNIPROTKB|F1PSC7454 TIMM44 "Uncharacterized protei 0.723 0.737 0.237 4.6e-15
UNIPROTKB|O43615452 TIMM44 "Mitochondrial import i 0.725 0.743 0.237 1.3e-14
UNIPROTKB|E1B844454 TIMM44 "Uncharacterized protei 0.723 0.737 0.231 2.2e-14
MGI|MGI:1343262452 Timm44 "translocase of inner m 0.751 0.769 0.246 4.7e-14
UNIPROTKB|F1SA66454 TIMM44 "Uncharacterized protei 0.723 0.737 0.226 8.1e-14
TAIR|locus:2039195 TIM44-2 "AT2G36070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
 Identities = 278/435 (63%), Positives = 351/435 (80%)

Query:     1 MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
             MASRKLVRDL +++Q P   QL   +    RL L+  NG++S+R+FSVF EFSKKI+GEA
Sbjct:     1 MASRKLVRDLLITKQ-PLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEA 59

Query:    61 ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
             +SNPEF+ +VKE K++AEE++GVKE+LK RTKQTTE+LYKQ  GVW EAES  KKVS+S+
Sbjct:    60 DSNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119

Query:   121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
             K+K SAATEEVK +F+ G  +++         G   + GE++Q+Q+ S++  +TF+GK K
Sbjct:   120 KDKFSAATEEVKESFKLGKEESAESASSS---GTGTTEGEKQQQQSGSTEEQDTFFGKFK 176

Query:   181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
             SSISSPK + AF K      +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+STR
Sbjct:   177 SSISSPKLSEAFHK-----PLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTR 231

Query:   241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
             T++V+ P+K+S W K    L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSDN
Sbjct:   232 TEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDN 291

Query:   297 PIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVET 356
             PIVHKIQDMNE IF+ET +A++ KEIRRRDPSFSLPDFVSE+QEAIRPVL+AY KGD +T
Sbjct:   292 PIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAKT 351

Query:   357 LKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQI 416
             LKKYCS E+IERC AEH A+ S G FFD+++LHVSEV+++ETKMMG++P+IIV FQTQ+I
Sbjct:   352 LKKYCSKELIERCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEI 411

Query:   417 YCVRDKHGTITEGGK 431
             +CVRD+ G I EGG+
Sbjct:   412 FCVRDQDGKIKEGGQ 426
GO:0005622 "intracellular" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA
GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS
GO:0006626 "protein targeting to mitochondrion" evidence=RCA;TAS
GO:0015462 "protein-transmembrane transporting ATPase activity" evidence=TAS
GO:0005743 "mitochondrial inner membrane" evidence=IDA
TAIR|locus:2054759 TIM44-1 "translocase inner membrane subunit 44-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0038683 CG11779 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NU71 TIMM44 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000001284 TIM44 "Essential component of the TIM23 complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSC7 TIMM44 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O43615 TIMM44 "Mitochondrial import inner membrane translocase subunit TIM44" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B844 TIMM44 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1343262 Timm44 "translocase of inner mitochondrial membrane 44" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SA66 TIMM44 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XF06TI442_ARATHNo assigned EC number0.63900.91140.8997yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
pfam04280146 pfam04280, Tim44, Tim44-like domain 8e-37
smart00978147 smart00978, Tim44, Tim44 is an essential component 8e-30
TIGR00984378 TIGR00984, 3a0801s03tim44, mitochondrial import in 6e-21
COG4395281 COG4395, COG4395, Uncharacterized protein conserve 7e-11
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-04
>gnl|CDD|202957 pfam04280, Tim44, Tim44-like domain Back     alignment and domain information 
 Score =  131 bits (333), Expect = 8e-37
 Identities = 37/114 (32%), Positives = 63/114 (55%)

Query: 316 AASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTA 375
           AA+++ I+  DPSF + +F+   +EA   +  A+ +GD+ETL++  +PEV E   A    
Sbjct: 1   AAALRAIKAADPSFDVEEFLEGAREAYEMIQEAWARGDLETLRELLTPEVYEEFAAAIAE 60

Query: 376 YQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEG 429
            ++ G+  D+ I+ + + E+ E KM G   ++ V F  Q I    D  G + EG
Sbjct: 61  REAQGLTNDSTIVGIRDAELLEAKMEGDEAVVTVRFVAQLISVTDDASGEVVEG 114

Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane. Length = 146
>gnl|CDD|214950 smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane Back     alignment and domain information
>gnl|CDD|130057 TIGR00984, 3a0801s03tim44, mitochondrial import inner membrane, translocase subunit Back     alignment and domain information
>gnl|CDD|226830 COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
KOG2580459 consensus Mitochondrial import inner membrane tran 100.0
TIGR00984378 3a0801s03tim44 mitochondrial import inner membrane 100.0
PF04280147 Tim44: Tim44-like domain; InterPro: IPR007379 Tim4 99.95
COG4395281 Uncharacterized protein conserved in bacteria [Fun 99.8
KOG2580459 consensus Mitochondrial import inner membrane tran 98.17
PF07961235 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 97.52
TIGR00984378 3a0801s03tim44 mitochondrial import inner membrane 96.86
PF13355117 DUF4101: Protein of unknown function (DUF4101) 90.91
PF07464155 ApoLp-III: Apolipophorin-III precursor (apoLp-III) 89.8
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-85  Score=664.16  Aligned_cols=386  Identities=29%  Similarity=0.498  Sum_probs=329.8

Q ss_pred             cCCccccccccccCCC-CCCCccchHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhh
Q 012457           26 QGSSTRLRLVSANGYS-SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDG  104 (463)
Q Consensus        26 ~~~~~~~~~~~~~~~s-~~r~~~ff~~f~~~iK~E~~KnkElkeniK~~~eea~kl~~~~e~lk~r~~~~a~~~~k~v~~  104 (463)
                      +++..|+++.+.++|| ++||+|||++|+||||+||+||||||+|||+|++++++|++| ++||     .||++|..+  
T Consensus        41 ~~~~ar~~~~q~~~yss~~~r~s~ls~f~dn~r~E~~knkElqe~iK~lkd~a~~L~es-da~k-----kaR~k~~~~--  112 (459)
T KOG2580|consen   41 TRLGARLPFSQTRGYSSPGRRRSFLSEFSDNVRAELDKNKELQESIKKLKDRAGELEES-DALK-----KARTKYETA--  112 (459)
T ss_pred             hcccccccccccccccCCCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhccc-hHHH-----HHHHHHHHH--
Confidence            4688899999999999 489999999999999999999999999999999999999998 5676     599999999  


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCcccccccccCcchhhhhhcccCCcchhhhccccccCC
Q 012457          105 VWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSIS  184 (463)
Q Consensus       105 ~~~esE~~~~k~s~~~k~k~~~~~e~vk~t~~~~k~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~a~~~~~~f~~~~~  184 (463)
                           |++++++|..++.+++++.|.|+...    +++++|+...   +.+++.+|..++|++++++-+++|++|.++..
T Consensus       113 -----e~~t~~~s~~~kk~~~e~~e~~k~~~----~ea~eS~~~k---~t~~~~~e~~kqA~~sae~vd~~~~kv~~T~~  180 (459)
T KOG2580|consen  113 -----ESETQASSEVLKKKLGELKETVKLGA----EEAWESALGK---KTKEAVEEAQKQASGSAEEVDTFFEKVGQTAA  180 (459)
T ss_pred             -----HhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHhhhhhc---cchhhHHHHHHHhhcchhhhhHhhhhhhhhhh
Confidence                 88899999999999999988888776    4777765333   88888899999998888766666665555555


Q ss_pred             CccchHHHHHhHHHHHHHHHhhhhhhhcccccCCCCcccccCCCCCCCCCCCCCc-ccceEEecccchhHHH-HHHhhcC
Q 012457          185 SPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKST-RTDLVVTPSKKSMWSK-LKEKMQG  262 (463)
Q Consensus       185 ~~~~s~~~~kl~~~~~~~~~~~g~~~vk~el~~~~~~rkr~~~~~~~~~~~e~~~-~t~~v~~~~k~s~w~~-~k~~~~~  262 (463)
                      +|.||+.+..+++  -++.++.|..+||+++...+++.+.....+++++++|+++ +++||  +|++|+||+ |++|+++
T Consensus       181 yk~vSe~~~~vkk--~~d~s~~g~~i~k~~~r~lr~r~~~~~~~~~~~~~~E~n~~a~~vv--~h~~skw~~kwe~fkek  256 (459)
T KOG2580|consen  181 YKAVSEVMETVKK--EIDSSRYGLDIVKERPRKLRKRTEFLGDTFPSEKVGEPNEEAEGVV--LHKDSKWYQKWEDFKEK  256 (459)
T ss_pred             HHHHHHHHHhhcc--cchhhhhhhhchhhhhhhchhhhhhhccCCCcccccCCCcceeeEE--eccchHHHHHHHHHHhc
Confidence            5555555555553  3355555555555555543333334445556777776655 55544  699999999 9999999


Q ss_pred             CccccccccccCccccccccchHHhhhhhcccccchhh-------hhhcccccccccChHHHHHHHHHHcCCCCChhHHH
Q 012457          263 YPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFV  335 (463)
Q Consensus       263 ~p~~~~~~g~~~pv~~k~~e~~~d~r~~~eeSenP~V~-------ki~di~d~lf~ete~a~vl~eIkk~DPsFd~~~FL  335 (463)
                      |.++++|.               +|+..||+||||+|.       ++.++.+++|.+|+.++++++|+++||+||.++||
T Consensus       257 ~~~~~k~~---------------~lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF~~~~Fl  321 (459)
T KOG2580|consen  257 NVVVRKFQ---------------ELKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSFDKEDFL  321 (459)
T ss_pred             ccchHHHH---------------HHHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCCCcHHHH
Confidence            99999999               999999999999994       55556668999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHcCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCcccceEEeeccceEEEeEecCCccEEEEEEEEE
Q 012457          336 SEVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQ  414 (463)
Q Consensus       336 ~~areai~p-ILeAf~~GDle~LK~~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~~VeI~~ak~~e~~pvItVrF~aQ  414 (463)
                      +.|+++|+| ||+||.+||+++||+||++++|+++++++++++++|+.+|++||||++|||++++||+++|||||+|++|
T Consensus       322 r~~ee~IiPnVLeAyvkGD~evLK~wcsea~~~~~aa~~keykk~gv~~d~kILdI~~Vdia~~KmM~d~PVlIitFqaQ  401 (459)
T KOG2580|consen  322 RECEEYIIPNVLEAYVKGDLEVLKKWCSEAPFSQLAAPIKEYKKHGVYFDSKILDIRGVDIASGKMMEDGPVLIITFQAQ  401 (459)
T ss_pred             HHHHHhhhHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHHHHHhcCeeecceeeeeccchhHHhhhhccCCEEEEEEeeE
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCcccCCCCcceEEEecccccCCcccc
Q 012457          415 QIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEA  450 (463)
Q Consensus       415 qI~~vRDk~GeVVEGd~d~I~~v~Y~~~~~~~~~e~  450 (463)
                      +|||+||.+|+|||||||+|++|+|.|+.-++-+|.
T Consensus       402 eI~~vRd~~GevveGd~d~i~~v~y~wvl~rd~~El  437 (459)
T KOG2580|consen  402 EIMCVRDAKGEVVEGDPDKILRVYYAWVLCRDQDEL  437 (459)
T ss_pred             EEEEEEcCCCceecCCCCceeeEEeeeeeeccHhhc
Confidence            999999999999999999999999998866554443

>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit Back     alignment and domain information
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [] Back     alignment and domain information
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ] Back     alignment and domain information
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit Back     alignment and domain information
>PF13355 DUF4101: Protein of unknown function (DUF4101) Back     alignment and domain information
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
3qk9_A222 Yeast Tim44 C-Terminal Domain Complexed With Cymal- 1e-14
2fxt_A192 Crystal Structure Of Yeast Tim44 Length = 192 2e-14
2cw9_A194 Crystal Structure Of Human Tim44 C-Terminal Domain 1e-12
>pdb|3QK9|A Chain A, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3 Length = 222 Back     alignment and structure 
Iteration: 1

 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 291 WETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VL 346
           W+ S+NP++    KI +     F ET+++    + +  DP+FS   F   ++E I P +L
Sbjct: 34  WDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEIL 93
Query: 347 SAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSS-- 404
            AY+KGDV+ LKK+ S        A+   ++   ++ D RIL +  VE+   K++     
Sbjct: 94  EAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDI 153
Query: 405 PIIIVAFQTQQIYCVRDKH-GTITEGGKVN 433
           P+++V  + Q+I   R K  G I  G + N
Sbjct: 154 PVLVVGCRAQEINLYRKKKTGEIAAGDEAN 183
>pdb|2FXT|A Chain A, Crystal Structure Of Yeast Tim44 Length = 192 Back     alignment and structure
>pdb|2CW9|A Chain A, Crystal Structure Of Human Tim44 C-Terminal Domain Length = 194 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
3qk9_A222 Mitochondrial import inner membrane translocase S 3e-42
2cw9_A194 Translocase of inner mitochondrial membrane; struc 3e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 9e-04
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A Length = 222 Back     alignment and structure
 Score =  148 bits (375), Expect = 3e-42
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 7/158 (4%)

Query: 280 GQEIAEDVRERWETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVS 336
           G+ I     + W+ S+NP++    KI +     F ET+++    + +  DP+FS   F  
Sbjct: 23  GRSIQSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTR 82

Query: 337 EVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEV 395
            ++E I P +L AY+KGDV+ LKK+ S        A+   ++   ++ D RIL +  VE+
Sbjct: 83  HLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEI 142

Query: 396 RETKMMG--SSPIIIVAFQTQQIYCVRD-KHGTITEGG 430
              K++     P+++V  + Q+I   R  K G I  G 
Sbjct: 143 VSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGD 180
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Length = 194 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
3qk9_A222 Mitochondrial import inner membrane translocase S 100.0
2cw9_A194 Translocase of inner mitochondrial membrane; struc 100.0
4hyz_A114 Uncharacterized protein; PF13026 family protein, D 87.36
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A Back     alignment and structure
Probab=100.00  E-value=1.5e-51  Score=396.37  Aligned_cols=185  Identities=25%  Similarity=0.487  Sum_probs=149.0

Q ss_pred             hhHHH-HHHhhcCCccccccccccCccccccccchHHhhhh-hcccccchhhhhhccccc---ccccChHHHHHHHHHHc
Q 012457          251 SMWSK-LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRER-WETSDNPIVHKIQDMNET---IFQETDAAASIKEIRRR  325 (463)
Q Consensus       251 s~w~~-~k~~~~~~p~~~~~~g~~~pv~~k~~e~~~d~r~~-~eeSenP~V~ki~di~d~---lf~ete~a~vl~eIkk~  325 (463)
                      .+|++ |++|+++||++++|+               |||++ |||||||+|+++|+|+|+   ||++|+++++|++|+++
T Consensus         7 ~~~~~~w~~fk~~~~~~~~~~---------------~~k~~~~~es~np~i~~~r~itd~v~~~f~~te~a~~l~~Ik~~   71 (222)
T 3qk9_A            7 ESFGKKVEDFKEKTVVGRSIQ---------------SLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLM   71 (222)
T ss_dssp             --------------------C---------------HHHHHHHHHCCCHHHHHHHHHCC---------CCHHHHTTCC--
T ss_pred             hHHHHHHHHHhhcCHHHHHHH---------------HHHhhhcccccCHHHHHHHHHHHhcccccCCCHHHHHHHHHHHh
Confidence            38999 999999999999999               99999 999999999999999985   89999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHHH-HHHHHHcCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCcccceEEeeccceEEEeEecC--
Q 012457          326 DPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMG--  402 (463)
Q Consensus       326 DPsFd~~~FL~~areai~p-ILeAf~~GDle~LK~~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~~VeI~~ak~~e--  402 (463)
                      ||+|++++|+++|+++|+| ||+||++||+++||+||++++|+.|+++|++|+++|++++++||+|++++|++|++++  
T Consensus        72 DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d~~il~I~~vdI~~a~~~~~~  151 (222)
T 3qk9_A           72 DPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQ  151 (222)
T ss_dssp             ---CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEECCEEEEEEEEEEEEEEECSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEeeeeEeeecceEEEEEEEecCC
Confidence            9999999999999999887 9999999999999999999999999999999999999999999999999999999995  


Q ss_pred             CccEEEEEEEEEEEEEEEc-CCCCcccCCCCcceEEEecccccCCcccc
Q 012457          403 SSPIIIVAFQTQQIYCVRD-KHGTITEGGKVNNTALLFPECGHLPLNEA  450 (463)
Q Consensus       403 ~~pvItVrF~aQqI~~vRD-k~GeVVEGd~d~I~~v~Y~~~~~~~~~e~  450 (463)
                      +.|+|||+|++|||+|+|| ++|+||+|+|++|.++.|.|++-++.++.
T Consensus       152 ~~p~itV~f~aq~i~~~rd~k~GeVVeGd~d~i~~~~~~WtF~R~~~~~  200 (222)
T 3qk9_A          152 DIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQI  200 (222)
T ss_dssp             CCEEEEEEEEEEEECCEEESTTCCCSSSCTTCCEEEEEEEEEEECCC--
T ss_pred             CceEEEEEEEEEEEEEEEeCCCCccccCCCCCceEEEEEEEEEEcCccC
Confidence            7999999999999999999 99999999999999999999987776543
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Back     alignment and structure
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 463
d2fxta1192 d.17.4.13 (A:234-425) Translocase of inner mitocho 1e-40
d2cw9a1182 d.17.4.13 (A:270-451) Translocase of inner mitocho 5e-33
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  141 bits (358), Expect = 1e-40
 Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 8/155 (5%)

Query: 285 EDVRER-WETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQE 340
           + ++ + W+ S+NP++    KI +     F ET+++    + +  DP+FS   F   ++E
Sbjct: 3   QSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLRE 62

Query: 341 AIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETK 399
            I P +L AY+KGDV+ LKK+ S        A+   ++   ++ D RIL +  VE+   K
Sbjct: 63  YIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAK 122

Query: 400 MMG--SSPIIIVAFQTQQIYCVRD-KHGTITEGGK 431
           ++     P+++V  + Q+I   R  K G I  G +
Sbjct: 123 LLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDE 157
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 182 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d2fxta1192 Translocase of inner mitochondrial membrane TIMM44 100.0
d2cw9a1182 Translocase of inner mitochondrial membrane TIMM44 100.0
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-43  Score=325.77  Aligned_cols=165  Identities=27%  Similarity=0.528  Sum_probs=156.1

Q ss_pred             HHhhhh-hcccccchhhhhhcccc---cccccChHHHHHHHHHHcCCCCChhHHHHHHHHHHHH-HHHHHHcCCHHHHhh
Q 012457          285 EDVRER-WETSDNPIVHKIQDMNE---TIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKK  359 (463)
Q Consensus       285 ~d~r~~-~eeSenP~V~ki~di~d---~lf~ete~a~vl~eIkk~DPsFd~~~FL~~areai~p-ILeAf~~GDle~LK~  359 (463)
                      ++||++ |||||||+|...++|+|   ++|++|+++++|++||++||+||..+|+.+|+.+|+| ||+||++||+++|++
T Consensus         3 ~~~~~~~~~~sdnp~v~~~r~i~d~~~~~f~ete~~~~l~~ik~~Dp~F~~~~Fl~gak~~~~p~Il~Af~~GD~~~Lk~   82 (192)
T d2fxta1           3 QSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKK   82 (192)
T ss_dssp             HHHHHHHHTCCSSHHHHHHHHHHTTTTCCBCCCCSHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHTTCHHHHHH
T ss_pred             hHhcccccccCCCcceeeeeeeccccccccccCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            389998 99999999977777766   6899999999999999999999999999999999996 999999999999999


Q ss_pred             hcCHHHHHHHHHHHHHHHHCCCcccceEEeeccceEEEeEec--CCccEEEEEEEEEEEEEEEc-CCCCcccCCCCcceE
Q 012457          360 YCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMM--GSSPIIIVAFQTQQIYCVRD-KHGTITEGGKVNNTA  436 (463)
Q Consensus       360 ~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~~VeI~~ak~~--e~~pvItVrF~aQqI~~vRD-k~GeVVEGd~d~I~~  436 (463)
                      ||++++|+.|+++|++|+++|+++++++|+|++++|++|+++  ++.|+|+|+|+||||+|+|| ++|+||+|++++|..
T Consensus        83 lls~~vy~~f~~~I~~r~~~g~~~~~~ii~I~~~~I~~a~~~~~~~~~~itV~F~t~qi~~~~d~k~G~IieGd~d~i~~  162 (192)
T d2fxta1          83 WFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILM  162 (192)
T ss_dssp             HBCHHHHHHHHHHHHHHHHTTEECCEEECCCEEEEEEEEEEETTTTEEEEEEEEEECEEECCEETTTBTTSSCSCCCCCC
T ss_pred             HhhHHHHHHHHHHHHHHHHcCCeeeEEEeccceeEEEEEEEecCCCeEEEEEEEEEEEEEEEEecCCCcEecCCCCccEE
Confidence            999999999999999999999999999999999999999997  45899999999999999998 689999999999999


Q ss_pred             EEecccccCCccc
Q 012457          437 LLFPECGHLPLNE  449 (463)
Q Consensus       437 v~Y~~~~~~~~~e  449 (463)
                      +.|.|++-+++++
T Consensus       163 v~d~WtF~R~~~~  175 (192)
T d2fxta1         163 SSYAMVFTRDPEQ  175 (192)
T ss_dssp             EEEEEEEECCSSS
T ss_pred             EEEEEEEEEcCcc
Confidence            9999998877754
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure