Citrus Sinensis ID: 012480

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
MILAVYVFSFTVLACTMKKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEVRGLWSGHVNFSNKFIRKCRIAG
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHccccccccccccccccccccccEEEEEEEccccEEEEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccccHHHHHHHHHcccccccccEEEEEccEEEEcccHHHHcccccccEEEEEEccccccccccccccccccccccHHHHccccccccccccccHHHcHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHccccEEEccccccccccccccHHHHHHHccccEEEEccccccccccccccccHHccHHHcccccHHHHHccccc
cHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHccccccccccccccccEEEEEEEcHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHcccEEEEEcccEEEEEccHHHHcccccccEEEEEcccccccccccccHHccccccccHHHHHcccccHHHHHcccEEEEHHHHHHccHHHHHHHHHHHHHccccEEEEccccccHEEEEcccccccccccEEcccccccccccHHHHcccEEEEEccccccHHHcccccHHHHHHHHcccccHHHHHccccc
MILAVYVFSFTVLACTMKKLREELTRALIEAkdgsgngggriqGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLashgvpkslHCLCLKLAEEYAVNAMarsrlpspeyvshltdpsfhhVVLLTDNVLAASVVVSStvqnsarpeKLVFHIVtdkktytpmhsWFAINSFRSAVVEVKglhqydwsqEVNVGVKEMLEAHRLIWSHYYknlkhedfeyegenrrclevlspsCLSLMNHLRiyipelfpdlnkilfldddvVVQHDLSSLLELDLNGKVVGAVVgsscgdnccpgrkykdylnfsypiissnfdhdhcawlygmnvldleAWRRTNITATYHKWLKLNLKSglelwqpgalppallaldgnvhpidpswhvaeLGQRSLEAHEETLKSAAVLHfsgpakpwleiglpevrglwsghvnfSNKFIRKCRIAG
MILAVYVFSFTVLACTMKKLREELTRALIeakdgsgngggriQGTLDSFNELVKEVtskrqdikAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSstvqnsarpeklVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVgsscgdnccpGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEVRGlwsghvnfsnkfirkcriag
MILAVYVFSFTVLACTMKKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNvlaasvvvsstvqnsaRPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQpgalppallalDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEVRGLWSGHVNFSNKFIRKCRIAG
*ILAVYVFSFTVLACTMKKLREELTRALIE***********IQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKM**********ESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEVRGLWSGHVNFSNKFIRKCRI**
MILAVYVFSFTVL*CT**********************************ELVKEVTSKRQDIKAFAFKTKAMLLKME******RQRESIYWHLASHGVPKSLHCLCLKLAEEY**********************SFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEVRGLWSGHVNFSNKFIRKCRI**
MILAVYVFSFTVLACTMKKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKM*********RESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEVRGLWSGHVNFSNKFIRKCRIAG
MILAVYVFSFTVLACTMKKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLK***********RCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEVRGLWSGHVNFSNKFIRKCRIAG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MILAVYVFSFTVLACTMKKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEVRGLWSGHVNFSNKFIRKCRIAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query462 2.2.26 [Sep-21-2011]
Q8L4B0540 Probable galacturonosyltr yes no 0.963 0.824 0.689 0.0
Q8GWT1532 Probable galacturonosyltr no no 0.893 0.776 0.501 1e-114
Q0WV13533 Probable galacturonosyltr no no 0.893 0.774 0.501 1e-113
Q9FH36535 Probable galacturonosyltr no no 0.906 0.783 0.471 1e-112
Q93ZX7616 Probable galacturonosyltr no no 0.906 0.680 0.380 9e-84
Q9LE59673 Polygalacturonate 4-alpha no no 0.859 0.589 0.366 4e-80
Q0WQD2680 Probable galacturonosyltr no no 0.835 0.567 0.399 2e-78
Q9LSG3559 Galacturonosyltransferase no no 0.798 0.660 0.379 1e-76
Q949Q1537 Probable galacturonosyltr no no 0.926 0.797 0.353 8e-76
Q9SKT6536 Probable galacturonosyltr no no 0.863 0.744 0.389 1e-73
>sp|Q8L4B0|GAUTF_ARATH Probable galacturonosyltransferase 15 OS=Arabidopsis thaliana GN=GAUT15 PE=2 SV=1 Back     alignment and function desciption
 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/447 (68%), Positives = 365/447 (81%), Gaps = 2/447 (0%)

Query: 16  TMKKLREELTRALIEAKDGSGNGGGR-IQGTLDSFNELVKEVTSKRQDIKAFAFKTKAML 74
           T  K+ EELTRAL+E      +  GR  +G+L+SF++LVKE+T KR+DI+AFA  TK ML
Sbjct: 92  TSLKIGEELTRALVEETTDHQDVNGRGTKGSLESFDDLVKEMTLKRRDIRAFASVTKKML 151

Query: 75  LKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLT 134
           L+ME +VQS++  E +YWHLASHG+PKSLHCL L+L EEY+VNAMAR RLP PE VS LT
Sbjct: 152 LQMERKVQSAKHHELVYWHLASHGIPKSLHCLSLRLTEEYSVNAMARMRLPPPESVSRLT 211

Query: 135 DPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSA 194
           DPSFHH+VLLTDNVLAASVV+SSTVQN+  PEK VFHIVTDKKTYTPMH+WFAINS  S 
Sbjct: 212 DPSFHHIVLLTDNVLAASVVISSTVQNAVNPEKFVFHIVTDKKTYTPMHAWFAINSASSP 271

Query: 195 VVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEY-EGENRRCLEVLSPS 253
           VVEVKGLHQYDW QEVN  V+EML+ HRLIW  +Y+NLK  DF + EG + + L+ L+PS
Sbjct: 272 VVEVKGLHQYDWPQEVNFKVREMLDIHRLIWRRHYQNLKDSDFSFVEGTHEQSLQALNPS 331

Query: 254 CLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNC 313
           CL+L+NHLRIYIP+LFPDLNKI+ LDDDVVVQ DLSSL E DLNGKVVGAVV S CGDNC
Sbjct: 332 CLALLNHLRIYIPKLFPDLNKIVLLDDDVVVQSDLSSLWETDLNGKVVGAVVDSWCGDNC 391

Query: 314 CPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSG 373
           CPGRKYKDY NFS+P+ISSN   + CAWL GMNV DL+AWR+TNIT  Y  WL+L+++SG
Sbjct: 392 CPGRKYKDYFNFSHPLISSNLVQEDCAWLSGMNVFDLKAWRQTNITEAYSTWLRLSVRSG 451

Query: 374 LELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWL 433
           L+LWQPGALPP LLA  G    ++PSWHVA LG RS+++ +E LKSA+VLHFSGPAKPWL
Sbjct: 452 LQLWQPGALPPTLLAFKGLTQSLEPSWHVAGLGSRSVKSPQEILKSASVLHFSGPAKPWL 511

Query: 434 EIGLPEVRGLWSGHVNFSNKFIRKCRI 460
           EI  PEVR LW  +VN S+ F+RKC+I
Sbjct: 512 EISNPEVRSLWYRYVNSSDIFVRKCKI 538
May be involved in pectin and/or xylans biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q8GWT1|GAUTE_ARATH Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1 Back     alignment and function description
>sp|Q0WV13|GAUTD_ARATH Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1 Back     alignment and function description
>sp|Q9FH36|GAUTC_ARATH Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1 Back     alignment and function description
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 Back     alignment and function description
>sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 Back     alignment and function description
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKT6|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
255558712535 Glycosyltransferase QUASIMODO1, putative 0.965 0.833 0.765 0.0
225446879528 PREDICTED: probable galacturonosyltransf 0.956 0.837 0.782 0.0
224131384531 glycosyltransferase [Populus trichocarpa 0.958 0.834 0.771 0.0
147794434528 hypothetical protein VITISV_043869 [Viti 0.913 0.799 0.776 0.0
356526995525 PREDICTED: probable galacturonosyltransf 0.945 0.832 0.712 0.0
356567408525 PREDICTED: probable galacturonosyltransf 0.945 0.832 0.703 0.0
22331857540 alpha-1,4-galacturonosyltransferase [Ara 0.963 0.824 0.689 0.0
297820714538 GAUT15 [Arabidopsis lyrata subsp. lyrata 0.961 0.825 0.688 0.0
7630074537 putative protein [Arabidopsis thaliana] 0.956 0.823 0.684 1e-180
356499376522 PREDICTED: probable galacturonosyltransf 0.945 0.837 0.698 1e-180
>gi|255558712|ref|XP_002520380.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi|223540427|gb|EEF41996.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/447 (76%), Positives = 391/447 (87%), Gaps = 1/447 (0%)

Query: 16  TMKKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLL 75
           T  KLREELTRAL+EAK+ SG    ++  +  SFNELVKE+TS RQDIKAFAF+TKAML 
Sbjct: 90  TSMKLREELTRALLEAKE-SGIDDEKMDDSTASFNELVKEMTSTRQDIKAFAFRTKAMLS 148

Query: 76  KMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTD 135
           KMEH+VQ +RQRESI+WHLASHG+PKSLHCLCLKL+EEYAVNA+ARSRLP PEYVS L D
Sbjct: 149 KMEHKVQLARQRESIFWHLASHGIPKSLHCLCLKLSEEYAVNAIARSRLPPPEYVSRLAD 208

Query: 136 PSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAV 195
           PSFHHVVL+TDNVLAASVV+SSTVQNS  PEKLVFHI+TDKKTYTPMH+WFAIN+ +SA 
Sbjct: 209 PSFHHVVLITDNVLAASVVISSTVQNSLSPEKLVFHIITDKKTYTPMHAWFAINTIKSAA 268

Query: 196 VEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCL 255
           VE+KGLHQYDWS+EVN+GVKEMLE HRLIWSHYY N+K EDF +EGE++R LE LSPSCL
Sbjct: 269 VEIKGLHQYDWSEEVNIGVKEMLETHRLIWSHYYTNMKEEDFLHEGEHKRSLEALSPSCL 328

Query: 256 SLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCP 315
           SL+NHLRIY+PELFPDLNKI+FLDDDVVVQHD+SSL E+DLN KVVGAVV S CG+NCCP
Sbjct: 329 SLLNHLRIYLPELFPDLNKIVFLDDDVVVQHDISSLWEMDLNEKVVGAVVDSWCGENCCP 388

Query: 316 GRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLE 375
            R+YKDYLNFS+ IISSN D + CAWLYGMNV DL+ WRR NIT  YHKWLK + KSGL+
Sbjct: 389 ARRYKDYLNFSHSIISSNLDPERCAWLYGMNVFDLDTWRRANITRNYHKWLKHSRKSGLD 448

Query: 376 LWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEI 435
           LWQPG LPPALLA +G+VHPIDPSWH+A LG++  E   E L++AA+LHF+GPAKPWLEI
Sbjct: 449 LWQPGVLPPALLAFEGHVHPIDPSWHLAGLGRKPPEVRREILETAAILHFNGPAKPWLEI 508

Query: 436 GLPEVRGLWSGHVNFSNKFIRKCRIAG 462
           G PEV+ LW  HVNFSN+FIRKCRIAG
Sbjct: 509 GFPEVQSLWIKHVNFSNEFIRKCRIAG 535

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446879|ref|XP_002279893.1| PREDICTED: probable galacturonosyltransferase 15 [Vitis vinifera] gi|296086324|emb|CBI31765.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131384|ref|XP_002321071.1| glycosyltransferase [Populus trichocarpa] gi|222861844|gb|EEE99386.1| glycosyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147794434|emb|CAN67083.1| hypothetical protein VITISV_043869 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356526995|ref|XP_003532100.1| PREDICTED: probable galacturonosyltransferase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356567408|ref|XP_003551912.1| PREDICTED: probable galacturonosyltransferase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|22331857|ref|NP_191438.2| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75153682|sp|Q8L4B0.1|GAUTF_ARATH RecName: Full=Probable galacturonosyltransferase 15 gi|20466464|gb|AAM20549.1| putative protein [Arabidopsis thaliana] gi|22136432|gb|AAM91294.1| putative protein [Arabidopsis thaliana] gi|332646311|gb|AEE79832.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820714|ref|XP_002878240.1| GAUT15 [Arabidopsis lyrata subsp. lyrata] gi|297324078|gb|EFH54499.1| GAUT15 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7630074|emb|CAB88296.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356499376|ref|XP_003518517.1| PREDICTED: probable galacturonosyltransferase 15-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
TAIR|locus:2099049540 GAUT15 "galacturonosyltransfer 0.963 0.824 0.639 6.3e-156
TAIR|locus:2180947532 GAUT14 "galacturonosyltransfer 0.893 0.776 0.455 4.2e-102
TAIR|locus:2102082533 GAUT13 "galacturonosyltransfer 0.891 0.772 0.454 1.1e-101
TAIR|locus:2157543535 GAUT12 "galacturonosyltransfer 0.906 0.783 0.434 6.1e-94
TAIR|locus:2160957616 GAUT4 "galacturonosyltransfera 0.911 0.683 0.351 7.7e-71
TAIR|locus:2051426536 GAUT10 "galacturonosyltransfer 0.863 0.744 0.353 9.2e-68
TAIR|locus:2098836673 GAUT1 "galacturonosyltransfera 0.859 0.589 0.327 8.2e-67
TAIR|locus:2121753680 GAUT3 "galacturonosyltransfera 0.835 0.567 0.359 6.7e-65
TAIR|locus:2027453537 GAUT11 "galacturonosyltransfer 0.854 0.735 0.331 1.6e-63
TAIR|locus:2090210559 QUA1 "QUASIMODO 1" [Arabidopsi 0.813 0.672 0.348 8.8e-63
TAIR|locus:2099049 GAUT15 "galacturonosyltransferase 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1520 (540.1 bits), Expect = 6.3e-156, P = 6.3e-156
 Identities = 286/447 (63%), Positives = 341/447 (76%)

Query:    16 TMKKLREELTRALIEAKDGSGNGGGR-IQGTLDSFNELVKEVTSKRQDIKAFAFKTKAML 74
             T  K+ EELTRAL+E      +  GR  +G+L+SF++LVKE+T KR+DI+AFA  TK ML
Sbjct:    92 TSLKIGEELTRALVEETTDHQDVNGRGTKGSLESFDDLVKEMTLKRRDIRAFASVTKKML 151

Query:    75 LKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLT 134
             L+ME +VQS++  E +YWHLASHG+PKSLHCL L+L EEY+VNAMAR RLP PE VS LT
Sbjct:   152 LQMERKVQSAKHHELVYWHLASHGIPKSLHCLSLRLTEEYSVNAMARMRLPPPESVSRLT 211

Query:   135 DPSFHHVVLLTDNXXXXXXXXXXXXXXXXRPEKLVFHIVTDKKTYTPMHSWFAINSFRSA 194
             DPSFHH+VLLTDN                 PEK VFHIVTDKKTYTPMH+WFAINS  S 
Sbjct:   212 DPSFHHIVLLTDNVLAASVVISSTVQNAVNPEKFVFHIVTDKKTYTPMHAWFAINSASSP 271

Query:   195 VVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEY-EGENRRCLEVLSPS 253
             VVEVKGLHQYDW QEVN  V+EML+ HRLIW  +Y+NLK  DF + EG + + L+ L+PS
Sbjct:   272 VVEVKGLHQYDWPQEVNFKVREMLDIHRLIWRRHYQNLKDSDFSFVEGTHEQSLQALNPS 331

Query:   254 CLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNC 313
             CL+L+NHLRIYIP+LFPDLNKI+ LDDDVVVQ DLSSL E DLNGKVVGAVV S CGDNC
Sbjct:   332 CLALLNHLRIYIPKLFPDLNKIVLLDDDVVVQSDLSSLWETDLNGKVVGAVVDSWCGDNC 391

Query:   314 CPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSG 373
             CPGRKYKDY NFS+P+ISSN   + CAWL GMNV DL+AWR+TNIT  Y  WL+L+++SG
Sbjct:   392 CPGRKYKDYFNFSHPLISSNLVQEDCAWLSGMNVFDLKAWRQTNITEAYSTWLRLSVRSG 451

Query:   374 LELWQXXXXXXXXXXXDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWL 433
             L+LWQ            G    ++PSWHVA LG RS+++ +E LKSA+VLHFSGPAKPWL
Sbjct:   452 LQLWQPGALPPTLLAFKGLTQSLEPSWHVAGLGSRSVKSPQEILKSASVLHFSGPAKPWL 511

Query:   434 EIGLPEVRGLWSGHVNFSNKFIRKCRI 460
             EI  PEVR LW  +VN S+ F+RKC+I
Sbjct:   512 EISNPEVRSLWYRYVNSSDIFVRKCKI 538
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS
TAIR|locus:2180947 GAUT14 "galacturonosyltransferase 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157543 GAUT12 "galacturonosyltransferase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L4B0GAUTF_ARATH2, ., 4, ., 1, ., -0.68900.96320.8240yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 0.0
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 1e-173
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 1e-151
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 1e-118
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 1e-114
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 1e-100
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 1e-100
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 1e-91
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 4e-91
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 8e-81
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 1e-56
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 1e-25
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 2e-14
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 2e-12
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information 
 Score =  851 bits (2200), Expect = 0.0
 Identities = 367/444 (82%), Positives = 399/444 (89%), Gaps = 1/444 (0%)

Query: 19  KLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKME 78
           KLREELTRAL+EAK+   +GG   +G+ +SFN+LVKE+TS RQDIKAFAF+TKAMLLKME
Sbjct: 93  KLREELTRALVEAKEQ-DDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKME 151

Query: 79  HEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSF 138
            +VQS+RQRESIYWHLASHG+PKSLHCLCLKLAEEYAVNAMARSRLP PE VS LTDPSF
Sbjct: 152 RKVQSARQRESIYWHLASHGIPKSLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSF 211

Query: 139 HHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEV 198
           HHVVLLTDNVLAASVV+SSTVQN+A PEKLVFHIVTDKKTYTPMH+WFAINS +SAVVEV
Sbjct: 212 HHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYTPMHAWFAINSIKSAVVEV 271

Query: 199 KGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLM 258
           KGLHQYDWSQEVNVGVKEMLE HRLIWSHYY+NLK  DF++EG ++R LE LSPSCLSL+
Sbjct: 272 KGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLL 331

Query: 259 NHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRK 318
           NHLRIYIPELFPDLNKI+FLDDDVVVQHDLSSL ELDLNGKVVGAVV S CGDNCCPGRK
Sbjct: 332 NHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRK 391

Query: 319 YKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQ 378
           YKDYLNFS+P+ISSN D + CAWLYGMNV DL+AWRRTNIT  YHKWLKL+L SGL+LWQ
Sbjct: 392 YKDYLNFSHPLISSNLDQERCAWLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQ 451

Query: 379 PGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLP 438
           PGALPPALLA  G+VHPIDPSWHVA LG R  E   E L+SAAVLHFSGPAKPWLEIG P
Sbjct: 452 PGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPREILESAAVLHFSGPAKPWLEIGFP 511

Query: 439 EVRGLWSGHVNFSNKFIRKCRIAG 462
           EVR LW  HVNFS+KFIRKCRI G
Sbjct: 512 EVRSLWYRHVNFSDKFIRKCRIMG 535

Length = 535
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 462
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 100.0
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.93
PLN00176333 galactinol synthase 99.92
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.77
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 99.25
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 97.81
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 96.27
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 85.41
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 81.15
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=9.9e-121  Score=944.25  Aligned_cols=439  Identities=51%  Similarity=0.874  Sum_probs=412.6

Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCCccCccchHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccC
Q 012480           19 KLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHG   98 (462)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~   98 (462)
                      ++++|++++|.|++.||++.|++   +|+|+++++++|++.+|||+++++|||+|++++|||++++|+|++|++||||+|
T Consensus        90 ~~~~~~~~~l~~~~~~~~~~d~~---lp~s~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~laa~t  166 (533)
T PLN02870         90 RLVRDFYKILNEVNTEEIPDGLK---LPDSFSQLVSDMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKHFAASS  166 (533)
T ss_pred             hhHHHHHHHHHHhcccccccccc---CChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            79999999999999999999999   999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccchhhHhhHHHHhChhhhccCCCccccCCCCCCCcceEEEEecCccccchhhhHhhhccCCCCceEEEEEeCCCC
Q 012480           99 VPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKT  178 (462)
Q Consensus        99 ~pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~~~d~~~ihIv~~sDn~la~sV~I~Sil~ns~~p~~i~FhIltd~~s  178 (462)
                      +|||+|||+||||+|||+++.+++++|++|..|+++||+++|+|++|||+||+||||+|++.|+++|+++|||||||++|
T Consensus       167 ~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHvvTD~~n  246 (533)
T PLN02870        167 IPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHVITDKKT  246 (533)
T ss_pred             cCCCccccchhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEEEEecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhccccccceeeeeeecccccccchhhhHHHHHHHhHhHHHhhccCCccccc---ccchhhhhhhccCCCCcc
Q 012480          179 YTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDF---EYEGENRRCLEVLSPSCL  255 (462)
Q Consensus       179 ~~~~~~wf~~n~~~~a~v~v~~i~~F~~l~~~~~p~l~~l~~~~~i~~~y~~~~~~~~~---~~p~~~~~~l~~~~~~~~  255 (462)
                      +.+|++||.+||+++|+|||+++++|+|++.+++|+++|+|+.+.++.+|+.+......   ..|.++.++++.++|+|+
T Consensus       247 ~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~yl  326 (533)
T PLN02870        247 YAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYI  326 (533)
T ss_pred             cHHHHHHHhhCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhcccccCCcccc
Confidence            99999999999999999999999999999999999999999999999999765432211   135556778999999999


Q ss_pred             cHhHHHHHhhccccCCCCeEEEEecCeeeccCcHHHhccCCCCceEEEEecCCCCCCCCCCcccccccccCCccccCCCC
Q 012480          256 SLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFD  335 (462)
Q Consensus       256 S~~~y~Rl~ipellp~~~KVLYLD~DvVV~~DLs~Lw~~dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~  335 (462)
                      |+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||...+.++..++++.|+||++|.+..+|+
T Consensus       327 S~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd  406 (533)
T PLN02870        327 SLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLD  406 (533)
T ss_pred             CHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccC
Confidence            99999999999999999999999999999999999999999999999999996543233346778899999999999999


Q ss_pred             CCCcccccceeeeecHHHHHhhHHHHHHHHHHHhccCCCCCCCCCCCcHHHhhcCCCeEecCCcccccccCCCchhhhHh
Q 012480          336 HDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEE  415 (462)
Q Consensus       336 ~~~~yfNsGV~linL~~wR~~~it~~~~~~l~~~~~~~~~~~dQd~L~~~n~~f~~~i~~L~~~wN~~~lgy~~~~~~~~  415 (462)
                      ++.||||||||||||++||++++++++++|++++..+++++||||+||++|++|+|++++||.+||++++||+... ..+
T Consensus       407 ~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy~~~~-~~~  485 (533)
T PLN02870        407 PEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGYQSKT-NIE  485 (533)
T ss_pred             cccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCCCcccc-ccc
Confidence            9999999999999999999999999999999987655689999999999999999999999999999999997654 457


Q ss_pred             hcCCCEEEeccCCCCCCCCCCCCccHHHHHHHHccCchhhhhcccC
Q 012480          416 TLKSAAVLHFSGPAKPWLEIGLPEVRGLWSGHVNFSNKFIRKCRIA  461 (462)
Q Consensus       416 ~~~~~~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~~~~~~c~~~  461 (462)
                      .+++|+||||+|++|||++.++++|+.+|.+|++++++|||+|||+
T Consensus       486 ~i~~aaIIHY~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~  531 (533)
T PLN02870        486 SVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL  531 (533)
T ss_pred             ccCCcEEEEECCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence            7899999999999999999999999999999999999999999996

>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
1ss9_A311 Crystal Structural Analysis Of Active Site Mutant Q 4e-04
1g9r_A311 Crystal Structure Of Galactosyltransferase Lgtc In 6e-04
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311 Back     alignment and structure 
Iteration: 1

 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 255 LSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCC 314
           +S+  + R+ + E   D +K+L+LD DV+V+  L+ L + DL    +GA          C
Sbjct: 79  ISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA----------C 128
Query: 315 PGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLK-----LN 369
                +    +   I  ++ ++   A   G+ +++L+ WRR +I     +W++     + 
Sbjct: 129 IDLFVERQEGYKQKIGMADGEYYFNA---GVLLINLKKWRRHDIFKMSCEWVEQYKDVMQ 185
Query: 370 LKSGLELWQXXXXXXXXXXXDGNVHPIDPSWHVAELGQRSLEA----HEETLKSAAVLHF 425
            +    L               N  P + ++       R  +        T+   AV H+
Sbjct: 186 YQDEDILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHY 245
Query: 426 SGPAKPW 432
            GPAKPW
Sbjct: 246 CGPAKPW 252
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 3e-47
3tzt_A276 Glycosyl transferase family 8; structural genomics 7e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-04
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  164 bits (416), Expect = 3e-47
 Identities = 51/321 (15%), Positives = 102/321 (31%), Gaps = 74/321 (23%)

Query: 140 HVVLLTDN--VLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVE 197
            +V   D+       V   S         ++ FH++                        
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDA---------------------- 38

Query: 198 VKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSL 257
                    S+      +  + A+        + +     ++ G        L+   +S+
Sbjct: 39  -------GISEAN----RAAVAANLRGGGGNIRFIDVNPEDFAGFP------LNIRHISI 81

Query: 258 MNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGR 317
             + R+ + E   D +K+L+LD DV+V+  L+ L + DL    +GA +     D     +
Sbjct: 82  TTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASI-----DLFVERQ 136

Query: 318 K-YKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLEL 376
           + YK  +  +              +  G+ +++L+ WRR +I     +W++   K  ++ 
Sbjct: 137 EGYKQKIGMA---------DGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQY-KDVMQY 186

Query: 377 WQPGALPPALLALDGNVHPIDPSWHVAELG-------------QRSLEAHEETLKSAAVL 423
                L        G V   +  ++                           T+   AV 
Sbjct: 187 QDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVS 243

Query: 424 HFSGPAKPWLEIGLPEVRGLW 444
           H+ GPAKPW           +
Sbjct: 244 HYCGPAKPWHRDCTAWGAERF 264
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 99.94
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.92
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=100.00  E-value=1.4e-46  Score=372.13  Aligned_cols=259  Identities=17%  Similarity=0.225  Sum_probs=180.6

Q ss_pred             cceEEEEecCcc--ccchhhhHhhhccCCCCceEEEEEeCCCCccchhhhhhccccccceeeeeeecccccccchhhhHH
Q 012480          138 FHHVVLLTDNVL--AASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK  215 (462)
Q Consensus       138 ~ihIv~~sDn~l--a~sV~I~Sil~ns~~p~~i~FhIltd~~s~~~~~~wf~~n~~~~a~v~v~~i~~F~~l~~~~~p~l  215 (462)
                      .||||+++|+.+  +++|+|+|+++|+++ ++++|||++++++.+..+..-.                            
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~----------------------------   55 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGE----------------------------   55 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHH----------------------------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHH----------------------------
Confidence            599999999866  599999999999986 6799999999998654321110                            


Q ss_pred             HHHHHhHhHHHhhccCCcccccccchhhhhhhccCCCCcccHhHHHHHhhccccC-CCCeEEEEecCeeeccCcHHHhcc
Q 012480          216 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFP-DLNKILFLDDDVVVQHDLSSLLEL  294 (462)
Q Consensus       216 ~~l~~~~~i~~~y~~~~~~~~~~~p~~~~~~l~~~~~~~~S~~~y~Rl~ipellp-~~~KVLYLD~DvVV~~DLs~Lw~~  294 (462)
                              +...+..+...+.+. ++.+. .+  ...+++|..+|+||++|+++| +++||||||+|+||++||++||++
T Consensus        56 --------~~~~~~~~i~~~~~~-~~~~~-~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~  123 (276)
T 3tzt_A           56 --------DLKKFSYTLYPIRAT-DDLFS-FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRT  123 (276)
T ss_dssp             --------HHHTTTCEEEEEECC-----------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTC
T ss_pred             --------HHHHcCCEEEEEEeC-HHHHh-cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhc
Confidence                    001111111111110 11111 11  123467999999999999999 699999999999999999999999


Q ss_pred             CCCCceEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeecHHHHHhhHHHHHHHHHHHhccCCC
Q 012480          295 DLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGL  374 (462)
Q Consensus       295 dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGV~linL~~wR~~~it~~~~~~l~~~~~~~~  374 (462)
                      |++|+++|||+||+...       ..+..+      ..+++...||||||||||||++||+.+++++++++++++. ..+
T Consensus       124 dl~~~~~aav~d~~~~~-------~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~-~~~  189 (276)
T 3tzt_A          124 DISDYILAAASHTGKTD-------MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNH-MNL  189 (276)
T ss_dssp             CCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-----
T ss_pred             CCCCCeEEEEEecccch-------HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcc-ccc
Confidence            99999999999997531       111111      1124444699999999999999999999999999998864 356


Q ss_pred             CCCCCCCCcHHHhhcCCCeEecCC-cccccccCCCch-------h-hhHhhcCCCEEEeccCCCCCCCCCCCCccHHHHH
Q 012480          375 ELWQPGALPPALLALDGNVHPIDP-SWHVAELGQRSL-------E-AHEETLKSAAVLHFSGPAKPWLEIGLPEVRGLWS  445 (462)
Q Consensus       375 ~~~dQd~L~~~n~~f~~~i~~L~~-~wN~~~lgy~~~-------~-~~~~~~~~~~IIHy~G~~KPW~~~~~~~y~~~W~  445 (462)
                      .++|||+|   |.+|.+++++||+ +||+++ |+...       . ...+..++|+||||+|+.|||...+.++|+++||
T Consensus       190 ~~~DQd~L---N~~f~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~  265 (276)
T 3tzt_A          190 LLPDQDIL---NAMYGDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYK  265 (276)
T ss_dssp             ----CHHH---HHHHGGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHH
T ss_pred             cCCChhHH---HHHHhCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHH
Confidence            78999998   6799999999999 999986 33210       0 0123467899999999999999998899999999


Q ss_pred             HHHccCchhh
Q 012480          446 GHVNFSNKFI  455 (462)
Q Consensus       446 ~Y~~~~~~~~  455 (462)
                      +|++..+++|
T Consensus       266 ~Y~~~~~~~~  275 (276)
T 3tzt_A          266 HYMSLTKRYL  275 (276)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999998886
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 462
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 1e-22
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 8e-05
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score = 95.0 bits (235), Expect = 1e-22
 Identities = 49/320 (15%), Positives = 98/320 (30%), Gaps = 72/320 (22%)

Query: 140 HVVLLTDN--VLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVE 197
            +V   D+       V   S         ++ FH++    +     +  A        + 
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDAGISEANRAAVAANLRGGGGNIR 60

Query: 198 VKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSL 257
                  +                   ++ +  N++H                    +S+
Sbjct: 61  F---IDVNPED----------------FAGFPLNIRH--------------------ISI 81

Query: 258 MNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGR 317
             + R+ + E   D +K+L+LD DV+V+  L+ L + DL    +GA +            
Sbjct: 82  TTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQE---- 137

Query: 318 KYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELW 377
            YK  +  +              +  G+ +++L+ WRR +I     +W++   K  ++  
Sbjct: 138 GYKQKIGMADG---------EYYFNAGVLLINLKKWRRHDIFKMSSEWVE-QYKDVMQYQ 187

Query: 378 QPGALPPALLALDGNVHPIDPSWHVAELG-------------QRSLEAHEETLKSAAVLH 424
               L        G V   +  ++                           T+   AV H
Sbjct: 188 DQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSH 244

Query: 425 FSGPAKPWLEIGLPEVRGLW 444
           + GPAKPW           +
Sbjct: 245 YCGPAKPWHRDCTAWGAERF 264
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.92
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 89.24
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=5.4e-43  Score=343.12  Aligned_cols=255  Identities=19%  Similarity=0.271  Sum_probs=191.2

Q ss_pred             ceEEEEecCcc--ccchhhhHhhhccCCCCceEEEEEeCCCCccchhhhhhccccccceeeeeeecccccccchhhhHHH
Q 012480          139 HHVVLLTDNVL--AASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKE  216 (462)
Q Consensus       139 ihIv~~sDn~l--a~sV~I~Sil~ns~~p~~i~FhIltd~~s~~~~~~wf~~n~~~~a~v~v~~i~~F~~l~~~~~p~l~  216 (462)
                      ||||+++|+.+  +++|+|+|+++|+++ ..++|||++++++.+..+.....                            
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~----------------------------   51 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAAN----------------------------   51 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHT----------------------------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHH----------------------------
Confidence            69999999865  588999999998876 57999999999987553321110                            


Q ss_pred             HHHHhHhHHHhhccCCcccccccchhhhhhhccCCCCcccHhHHHHHhhccccCCCCeEEEEecCeeeccCcHHHhccCC
Q 012480          217 MLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDL  296 (462)
Q Consensus       217 ~l~~~~~i~~~y~~~~~~~~~~~p~~~~~~l~~~~~~~~S~~~y~Rl~ipellp~~~KVLYLD~DvVV~~DLs~Lw~~dl  296 (462)
                              ...+..+...+.+. +..+. .. ....+++|.++|+||++|++||+++||||||+||||.+||++||++|+
T Consensus        52 --------~~~~~~~i~~~~~~-~~~~~-~~-~~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~  120 (282)
T d1ga8a_          52 --------LRGGGGNIRFIDVN-PEDFA-GF-PLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL  120 (282)
T ss_dssp             --------SGGGTTTEEEEECC-GGGGT-TS-CCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC
T ss_pred             --------HHHcCCeEEEEECC-chHhc-cc-cccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhccc
Confidence                    00111111111111 11110 01 113457899999999999999999999999999999999999999999


Q ss_pred             CCceEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeecHHHHHhhHHHHHHHHHHHhccCCCCC
Q 012480          297 NGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLEL  376 (462)
Q Consensus       297 ~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGV~linL~~wR~~~it~~~~~~l~~~~~~~~~~  376 (462)
                      +++.+|||.|+....    ...+...+         ++.+..+||||||||+|+++||+.++++++.++++++. ....+
T Consensus       121 ~~~~~aa~~d~~~~~----~~~~~~~~---------~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~-~~~~~  186 (282)
T d1ga8a_         121 GDNWLGASIDLFVER----QEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYK-DVMQY  186 (282)
T ss_dssp             TTCSEEEEECHHHHT----STTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHT-TTCSS
T ss_pred             ccceeeeehhhhhhh----hhhhHHHh---------CCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcc-cCccc
Confidence            999999999975321    11122222         34456899999999999999999999999999999875 35778


Q ss_pred             CCCCCCcHHHhhcCCCeEecCCcccccccCCC--c--------hh---hhHhhcCCCEEEeccCCCCCCCCCCCCccHHH
Q 012480          377 WQPGALPPALLALDGNVHPIDPSWHVAELGQR--S--------LE---AHEETLKSAAVLHFSGPAKPWLEIGLPEVRGL  443 (462)
Q Consensus       377 ~dQd~L~~~n~~f~~~i~~L~~~wN~~~lgy~--~--------~~---~~~~~~~~~~IIHy~G~~KPW~~~~~~~y~~~  443 (462)
                      +|||+|   |.+|.|++..||.+||+++.+|.  .        ..   ...+...+++||||+|+.|||...+.+++++.
T Consensus       187 ~DQd~L---N~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~  263 (282)
T d1ga8a_         187 QDQDIL---NGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAER  263 (282)
T ss_dssp             THHHHH---HHHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHH
T ss_pred             CchhHH---HHHhcCCEEeCCHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHH
Confidence            999998   67899999999999998753221  0        00   02345678999999999999998888888999


Q ss_pred             HHHHHcc
Q 012480          444 WSGHVNF  450 (462)
Q Consensus       444 W~~Y~~~  450 (462)
                      |++|...
T Consensus       264 ~~~~~~~  270 (282)
T d1ga8a_         264 FTELAGS  270 (282)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998653
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure