Citrus Sinensis ID: 012485
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 462 | ||||||
| 224097868 | 469 | predicted protein [Populus trichocarpa] | 0.941 | 0.927 | 0.781 | 0.0 | |
| 118488519 | 469 | unknown [Populus trichocarpa] | 0.945 | 0.931 | 0.762 | 0.0 | |
| 224113051 | 463 | predicted protein [Populus trichocarpa] | 0.945 | 0.943 | 0.762 | 0.0 | |
| 118488320 | 469 | unknown [Populus trichocarpa] | 0.954 | 0.940 | 0.754 | 0.0 | |
| 255587124 | 448 | ribophorin, putative [Ricinus communis] | 0.887 | 0.915 | 0.798 | 0.0 | |
| 225449032 | 466 | PREDICTED: dolichyl-diphosphooligosaccha | 0.971 | 0.963 | 0.729 | 0.0 | |
| 356535631 | 469 | PREDICTED: dolichyl-diphosphooligosaccha | 0.919 | 0.906 | 0.719 | 0.0 | |
| 356576227 | 463 | PREDICTED: dolichyl-diphosphooligosaccha | 0.922 | 0.920 | 0.711 | 0.0 | |
| 357443215 | 473 | Dolichyl-diphosphooligosaccharide-protei | 0.971 | 0.949 | 0.676 | 0.0 | |
| 297817778 | 464 | ribophorin I family protein [Arabidopsis | 0.943 | 0.939 | 0.704 | 0.0 |
| >gi|224097868|ref|XP_002311086.1| predicted protein [Populus trichocarpa] gi|222850906|gb|EEE88453.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/443 (78%), Positives = 386/443 (87%), Gaps = 8/443 (1%)
Query: 17 LIPIFLFISGASS-HQIRINNAERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQ 75
LI FL IS ASS +QI+I NAERRIDLS+HIVKVFLTLKVEN G T ASEI+LAF P Q
Sbjct: 17 LILTFLTISAASSTNQIQILNAERRIDLSSHIVKVFLTLKVENVGTTPASEIVLAFAPAQ 76
Query: 76 VDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIVLANPLNTGETATLEIL 135
DHLA ++A AA GKKKKK+YV L V PT+LPDAPN T Y++I L NPL++GETATLE+L
Sbjct: 77 ADHLALVKAQAAIGKKKKKSYVHLDVNPTELPDAPNGTKYFSISLLNPLSSGETATLEVL 136
Query: 136 YILTHSLEPFPVEISQSESQLVYYRDSALILSPYHIKQQTTFIKIPSNKVESFTRVEPTD 195
YILTHSLEPFP EISQSESQLVY+RDSALILSPYH+KQQTTF+K PS KVESFTRVEPT
Sbjct: 137 YILTHSLEPFPAEISQSESQLVYFRDSALILSPYHVKQQTTFLKTPSTKVESFTRVEPTK 196
Query: 196 RAGNELKYGPYEDRPPYSYSPLLVHFENNNPFSVVEELVREVEISHWGNLQITEQYKLAH 255
AG ELKYGPYED PPYS+SP++VH ENN+PF+VVEEL+REVEISHWGNLQITE YKL H
Sbjct: 197 LAGRELKYGPYEDHPPYSFSPVIVHLENNSPFAVVEELLREVEISHWGNLQITEHYKLVH 256
Query: 256 AGARHKGIFSRVDYQSKPTFSGVSSFKHLLARLPPRVHSVYYRDEIGNISTSHLRADSWK 315
AGARHKG+FSRV+YQS+P+FSG SSFKHLLA LPPRVHSVYYRD+IGNIS+SHLR+D+ K
Sbjct: 257 AGARHKGVFSRVEYQSRPSFSGTSSFKHLLASLPPRVHSVYYRDDIGNISSSHLRSDNRK 316
Query: 316 ISELEIEPRYPLFGGWRATFVIGYGLPLEDFLFESSDGRRYLNFTFGCPLVETVVDKLTI 375
SELEIEPRYPLFGGW+ATFVIGYGLPLEDFLFES DG+RYLNF+FGCPL ETVVDKLTI
Sbjct: 317 -SELEIEPRYPLFGGWKATFVIGYGLPLEDFLFESPDGKRYLNFSFGCPLAETVVDKLTI 375
Query: 376 KVVLPEGAKGPSAVVPFPVEQRLETKYSYLDVVGRTVVVLEKKNVVPVHNIPFQV--TFS 433
KVVLPEG+K PSAVVPFPVEQRLETKYSYLDVVGRTV+VLE KNVVP H PFQV TF
Sbjct: 376 KVVLPEGSKDPSAVVPFPVEQRLETKYSYLDVVGRTVLVLENKNVVPEHITPFQVYYTFK 435
Query: 434 PVL----PLHFLSIDFIIFVSVL 452
P+ PL S+ F+ F++ L
Sbjct: 436 PIFMLAEPLMLASVFFLFFMACL 458
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118488519|gb|ABK96072.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224113051|ref|XP_002316373.1| predicted protein [Populus trichocarpa] gi|222865413|gb|EEF02544.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|118488320|gb|ABK95979.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255587124|ref|XP_002534147.1| ribophorin, putative [Ricinus communis] gi|223525793|gb|EEF28240.1| ribophorin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|225449032|ref|XP_002273327.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Vitis vinifera] gi|296086009|emb|CBI31450.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356535631|ref|XP_003536348.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356576227|ref|XP_003556235.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357443215|ref|XP_003591885.1| Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit [Medicago truncatula] gi|355480933|gb|AES62136.1| Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|297817778|ref|XP_002876772.1| ribophorin I family protein [Arabidopsis lyrata subsp. lyrata] gi|297322610|gb|EFH53031.1| ribophorin I family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 462 | ||||||
| TAIR|locus:2065378 | 464 | AT2G01720 "AT2G01720" [Arabido | 0.919 | 0.915 | 0.682 | 4.6e-160 | |
| TAIR|locus:2014579 | 614 | AT1G76400 "AT1G76400" [Arabido | 0.909 | 0.684 | 0.473 | 4.1e-104 | |
| UNIPROTKB|E1C0F1 | 601 | RPN1 "Dolichyl-diphosphooligos | 0.902 | 0.693 | 0.375 | 2.5e-72 | |
| MGI|MGI:98084 | 608 | Rpn1 "ribophorin I" [Mus muscu | 0.880 | 0.669 | 0.363 | 3.1e-67 | |
| UNIPROTKB|F1SPG2 | 608 | RPN1 "Dolichyl-diphosphooligos | 0.880 | 0.669 | 0.358 | 4e-67 | |
| UNIPROTKB|Q9GMB0 | 608 | RPN1 "Dolichyl-diphosphooligos | 0.880 | 0.669 | 0.358 | 4e-67 | |
| ZFIN|ZDB-GENE-030131-4286 | 598 | rpn1 "ribophorin I" [Danio rer | 0.889 | 0.687 | 0.331 | 5.1e-67 | |
| UNIPROTKB|P04843 | 607 | RPN1 "Dolichyl-diphosphooligos | 0.885 | 0.673 | 0.363 | 1.3e-66 | |
| UNIPROTKB|E2RQ08 | 607 | RPN1 "Uncharacterized protein" | 0.880 | 0.670 | 0.356 | 1.7e-66 | |
| UNIPROTKB|A3KN04 | 609 | RPN1 "Uncharacterized protein" | 0.880 | 0.668 | 0.361 | 1.2e-65 |
| TAIR|locus:2065378 AT2G01720 "AT2G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1559 (553.9 bits), Expect = 4.6e-160, P = 4.6e-160
Identities = 295/432 (68%), Positives = 351/432 (81%)
Query: 27 ASSHQIRINNAERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALA 86
+S+ ++I NAERRIDLS+HIVK FLTLKVEN GK A+E+LLAFPPTQ+ +LA ++ALA
Sbjct: 22 SSAQDLQIVNAERRIDLSSHIVKAFLTLKVENIGKDPAAEMLLAFPPTQIKNLAMVQALA 81
Query: 87 ATGXXXXXTYVSLAVKPTQLPDAPNETNYYTIVLANPLNTGETATLEILYILTHSLEPFP 146
TG TY+ L VKPT+ PDAPN+T YY + +PL GET +LE+LYILTHSLEPFP
Sbjct: 82 TTGKKKKKTYLPLDVKPTEQPDAPNDTGYYRVTFISPLGPGETVSLEVLYILTHSLEPFP 141
Query: 147 VEISQSESQLVYYRDSALILSPYHIKQQTTFIKIPSNKVESFTRVEPTDRAGNELKYGPY 206
VEI+QSESQLVYY DSA+ILSPYH+KQQTTFIK PS +VESFT +EP +RAG E+KYGPY
Sbjct: 142 VEITQSESQLVYYHDSAVILSPYHVKQQTTFIKTPSTRVESFTSIEPANRAGKEIKYGPY 201
Query: 207 EDRPPYSYSPLLVHFENNNPFSVVEELVREVEISHWGNLQITEQYKLAHAGARHKGIFSR 266
E+R YSY+P+++HFENN+PF+VVEELVRE+EISHWG+LQITE Y+L H GARHKG+FSR
Sbjct: 202 ENRASYSYTPVIIHFENNSPFAVVEELVREIEISHWGSLQITENYRLTHGGARHKGVFSR 261
Query: 267 VDYQSKPTFSGVSSFKHLLARLPPRVHSVYYRDEIGNISTSHLRADSWKISELEIEPRYP 326
VDYQSK + SG SSF LLA LPPRV+SVYYRDEIGNISTSHLR ++ SELE EPRYP
Sbjct: 262 VDYQSKRSVSGASSFNALLAVLPPRVNSVYYRDEIGNISTSHLRT-GFRKSELEFEPRYP 320
Query: 327 LFGGWRATFVIGYGLPLEDFLFESSDGRRYLNFTFGCPLVETVVDKLTIKVVLPEGAKGP 386
LFGGW ATF+IGY +PLED+LFE+SDGRRYLNFTFGCPLVET+V+KLTIKVVLPEG+K P
Sbjct: 321 LFGGWSATFIIGYRVPLEDYLFEASDGRRYLNFTFGCPLVETIVNKLTIKVVLPEGSKDP 380
Query: 387 SAVVPFPVEQRLETKYSYLDVVGRTXXXXXXXXXXXXHNIPFQV--TFSPVL----PLHF 440
SAV+PF V Q L+ KYSYLD+VGRT HN+PFQV TF P+ P
Sbjct: 381 SAVLPFTVNQELQVKYSYLDIVGRTVVVLQKDNVVPTHNVPFQVYYTFKPIYMLAEPFML 440
Query: 441 LSIDFIIFVSVL 452
+S F++FV+ L
Sbjct: 441 VSAFFLVFVASL 452
|
|
| TAIR|locus:2014579 AT1G76400 "AT1G76400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C0F1 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:98084 Rpn1 "ribophorin I" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SPG2 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9GMB0 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-4286 rpn1 "ribophorin I" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P04843 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RQ08 RPN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A3KN04 RPN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 462 | |||
| pfam04597 | 429 | pfam04597, Ribophorin_I, Ribophorin I | 1e-159 |
| >gnl|CDD|218165 pfam04597, Ribophorin_I, Ribophorin I | Back alignment and domain information |
|---|
Score = 457 bits (1177), Expect = e-159
Identities = 183/433 (42%), Positives = 244/433 (56%), Gaps = 19/433 (4%)
Query: 32 IRINNAERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKK 91
N ER IDL+ VK + + ++N G SE AFPP + D+LA L A K
Sbjct: 2 WENVNVERTIDLTKSYVKETIKITIKNIGDEPQSEYYFAFPPDEADNLAGLSA-KDKDAK 60
Query: 92 KKKTYVSLAVKPTQLPDAPNETNYYTIVLANPLNTGETATLEILYILTHSLEPFPVEISQ 151
+K + + V+ +T Y+ I L PL GE TL++ Y+LT+ L+P P EI+Q
Sbjct: 61 EKGKFEPIEVENGS------DTGYFKITLPKPLAPGEQVTLKVSYVLTNPLKPLPAEITQ 114
Query: 152 SESQLVYYRDSALILSPYHIKQQTTFIKIPSNKVESFTRVE--PTDRAGNELKYGPYEDR 209
SE QL+ Y +A SPY K+Q T IK PS + S+T+ P R GN L YGPYE+
Sbjct: 115 SEKQLLLYETNAYFYSPYPTKKQKTKIKGPSGNILSYTKTPNLPPTRQGNTLTYGPYENV 174
Query: 210 PPYSYSPLLVHFENNNPFSVVEELVREVEISHWGNLQITEQYKLAHAGARHKGIFSRVDY 269
P +S P+ VH+ENN P V L R++E+SHWGN+ + E Y+L + GA+ KG FSRVDY
Sbjct: 175 PAFSLEPITVHYENNKPLITVTNLERDIEVSHWGNIAVEEYYELTNNGAKLKGGFSRVDY 234
Query: 270 QSKPT-FSGVSSFKHLLARLPPRVHSVYYRDEIGNISTSHLRADSWKISELEIEPRYPLF 328
Q S+ K L LP VYY DEIGN+STS +R D ELE++PR+PLF
Sbjct: 235 QKGSYSTRNSSALKSLKTPLPAGATDVYYTDEIGNVSTSRVREDKDSA-ELELKPRFPLF 293
Query: 329 GGWRATFVIGYGLPLEDFLFESSDGRRYLNFTFGCPLVETVVDKLTIKVVLPEGAKGPSA 388
GGW+ F IG+ LPL DFL + D L F + V D +T+KV+LPEGA+
Sbjct: 294 GGWKYNFTIGWNLPLSDFLRKDGDNTYVLKVPFLNGPKDVVYDNVTLKVILPEGAEDIKV 353
Query: 389 VVPFPVEQR-LETKYSYLDVVGRTVVVLEKKNVVP-VHNIPFQVT--FSPVL----PLHF 440
PFP++ LE + SYLD GR VV LEKKN+V + VT +S PL
Sbjct: 354 ETPFPIDSVELELEKSYLDTKGRPVVTLEKKNLVDEHRDQDVLVTYKYSKSAILRKPLLI 413
Query: 441 LSIDFIIFVSVLL 453
FI+F++V+L
Sbjct: 414 AGGFFILFLAVIL 426
|
Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (EC:2.4.1.119). OST catalyzes the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are though to be responsible for OST catalytic activity. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function Most family members are predicted to have a transmembrane helix at the C terminus of this region. Length = 429 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 462 | |||
| KOG2291 | 602 | consensus Oligosaccharyltransferase, alpha subunit | 100.0 | |
| PF04597 | 432 | Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ri | 100.0 | |
| smart00609 | 130 | VIT Vault protein Inter-alpha-Trypsin domain. | 91.81 | |
| PF08487 | 118 | VIT: Vault protein inter-alpha-trypsin domain; Int | 91.42 | |
| PF09972 | 511 | DUF2207: Predicted membrane protein (DUF2207); Int | 90.38 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 80.79 |
| >KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-131 Score=1013.34 Aligned_cols=445 Identities=51% Similarity=0.815 Sum_probs=413.2
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCCCCeEEeeEEEEEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEE
Q 012485 6 RPRIMLSLTIILIPIFLFISGASSHQIRINNAERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEAL 85 (462)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~v~R~IdL~~~~vk~~~~i~ikN~g~~~~~~y~~~l~~~~~~~ls~~~a~ 85 (462)
+++||+..+++|..++..+++.+++.|+|.|++|||||++|++|++++++++|+|++|+++|.+++++....+||+++|.
T Consensus 5 ~~~~~~~l~l~l~aia~~~a~~a~~~w~n~nv~RTIDlsS~ivK~tt~l~i~N~g~ePatey~~a~~~~~~~~la~ls~~ 84 (602)
T KOG2291|consen 5 SASWALVLVLLLFAIASGAASSAEQDWVNVNVERTIDLSSQIVKVTTELSIENIGSEPATEYLLAFEKELGASLAFLSVA 84 (602)
T ss_pred hhHHHHHHHHHHHHHhhccccCCccccccccceEEEehhhhhhhheeEEEEEecCCCchheEEEeccCccccceeEEEEe
Confidence 66777666666665665557778899999999999999999999999999999999999999999999999999999998
Q ss_pred EcCCccccceeeeeeeeeecCCCCCCCceEEEEEeCCCCCCCCeEEEEEEEEEcccccccCcccCcCCceeEEEEeCcee
Q 012485 86 AATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIVLANPLNTGETATLEILYILTHSLEPFPVEISQSESQLVYYRDSALI 165 (462)
Q Consensus 86 ~~~~~~k~~~~~~l~v~~~~~~~~~~~~~~~~I~Lp~pl~p~~~~~l~v~~~~~~~~~P~P~~I~q~e~Q~l~~~~n~~~ 165 (462)
..+++++ +...+++.+.++.+ +++ .+|.|+||.|+.||++++|.|++++++.++|+|++|+|+|+|+|+|.+|+|+
T Consensus 85 ~~~g~~~--~~l~~s~~~~~~~~-~~~-~~y~v~lp~pl~pge~vTl~V~~~~t~vl~P~Pe~I~QsE~Q~vv~~tn~~~ 160 (602)
T KOG2291|consen 85 FTEGKKK--TLLKLSVNPPKKDG-ASE-RVYTVTLPNPLSPGEKVTLIVEAVLTHVLRPLPEEITQSEEQFVVYETNAYL 160 (602)
T ss_pred eccCccc--cccccccCCcccCC-Ccc-ceEEEeCCCCCCCCceEEEEEEeecccCcccChhhhCcCceeeEEEeccccc
Confidence 8776643 22445666655222 223 7999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeceEEEEEEeCCCccceeeccCCccccCCeEEeccCCCCCCCCcCCeEEEEEcccceeEEeeeEEEEEEecccce
Q 012485 166 LSPYHIKQQTTFIKIPSNKVESFTRVEPTDRAGNELKYGPYEDRPPYSYSPLLVHFENNNPFSVVEELVREVEISHWGNL 245 (462)
Q Consensus 166 ~SpY~t~~q~t~i~~~s~~i~s~t~~~~~~~~g~~i~yGP~~~v~p~s~~~~~Vhye~n~P~~~v~~L~R~IeVSHWGni 245 (462)
+|||.|++|+|.+++||+++++||+.++.+++|+.++||||+|+++|+++|+.||||||.||+++++|+|+|||||||||
T Consensus 161 ~SpY~Tk~Q~t~ikl~Ss~ies~T~~~~~k~~gn~l~yGPyeni~afs~~pl~VhYEnnaPf~~v~~L~R~IevSHWgnI 240 (602)
T KOG2291|consen 161 LSPYDTKSQSTTIKLPSSKIESYTTVEPSKRSGNELKYGPYENIPAFSQEPLVVHYENNAPFVTVENLEREIEVSHWGNI 240 (602)
T ss_pred cCcccccceeEEEEcccccceeccccCcccccCceeeecCccccccccCCceEEEEecCCCcceeeeEEEEEEeecceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEcCCCccCcccchhcccCCCCCCccceeeeeeecCCcccCeEEEeccceeeeeeeeecCCceEEEEEecCC
Q 012485 246 QITEQYKLAHAGARHKGIFSRVDYQSKPTFSGVSSFKHLLARLPPRVHSVYYRDEIGNISTSHLRADSWKISELEIEPRY 325 (462)
Q Consensus 246 ~veE~y~l~N~GA~Lkg~FSR~d~~~~~~~~~~~~~~~l~~~LP~~a~d~YY~D~IGNISTS~~r~~~~~~~~l~l~PRf 325 (462)
+|||+|+|+|+||+|||+|||+|||++...++.++++++.+.||++|+|+||||+||||||||+|.+.++ ++|+|+|||
T Consensus 241 qVeE~~~lth~gAkLkg~FSR~d~q~~~~~~g~sai~~l~~~LP~~A~dvYYrDeiGNISTShmr~~~~~-~eleirPRf 319 (602)
T KOG2291|consen 241 QVEENYELTHKGAKLKGPFSRLDYQKQRRTRGASAINSLKTVLPARAKDVYYRDEIGNISTSHMRIDPDK-TELEIRPRF 319 (602)
T ss_pred EEEEEEEEEecceeccCCcchHhhhhcCCcCcchHHHHHHhhCCCccCceeeecccCcEehhhhcccCcc-ceEEeccCC
Confidence 9999999999999999999999999886658899999999999999999999999999999999999999 999999999
Q ss_pred cccCCceeeEEEeecCCcccceeeccCCceE-EEEEecCCC-cceEEEEEEEEEEcCCCCcCCeeeCCccee-eeceeEE
Q 012485 326 PLFGGWRATFVIGYGLPLEDFLFESSDGRRY-LNFTFGCPL-VETVVDKLTIKVVLPEGAKGPSAVVPFPVE-QRLETKY 402 (462)
Q Consensus 326 PLfGGWk~~FtiGyn~pl~~~L~~~~~~~~y-L~vp~~~~~-~d~~vd~~~l~IiLPEGA~~i~v~~P~~v~-~~~~~~~ 402 (462)
||||||||+|++|||+|+++||+ .+|++| |+++|..++ +|++||+++++|+|||||+||++.+||+++ .+.++++
T Consensus 320 PlFGGWkt~ftiGy~lP~~eyl~--~~g~ry~L~~~~~~~~~d~~V~dkl~ikvvLPEGak~i~i~tP~~is~~p~e~~~ 397 (602)
T KOG2291|consen 320 PLFGGWKTNFTIGYNLPLEEYLF--SKGRRYALKIILIDHIFDDTVYDKLTIKVVLPEGAKDIEIDTPYEISRSPIELKY 397 (602)
T ss_pred ccccCceeeEEEecCCcHHHHhh--ccCceeEEccccccCCCccceeeeEEEEEEccCCCcccccccceeeccCchhhhh
Confidence 99999999999999999999998 478888 999998865 677999999999999999999999999986 6799999
Q ss_pred EecCCCCCeEEEEEeecCCcCCcceEEE--EeCCch----hHHHHHHHHHHHHHHHHHhhh
Q 012485 403 SYLDVVGRTVVVLEKKNVVPVHNIPFQV--TFSPVL----PLHFLSIDFIIFVSVLLGTFC 457 (462)
Q Consensus 403 tyLDt~GRpvv~l~~~Nlv~~h~~~~~V--~y~~~~----Pl~i~~~~f~~fl~~~~~~~~ 457 (462)
|||||.||||++++++|+|+.|+++|+| +|++.. ||+|+++||++|+++++|+|.
T Consensus 398 syLDt~GR~Vvv~ek~Nvv~~h~~~i~v~Y~f~~~sml~ePL~i~a~ffilf~~~i~y~~~ 458 (602)
T KOG2291|consen 398 SYLDTNGRPVVVLEKNNVVPDHNQDIVVHYTFSKSSMLQEPLLIIAAFFILFFAVIVYVRL 458 (602)
T ss_pred hhhhccCcEEEEEEccccCCCCCccEEEEEEechhHhhhccHHHHHHHHHHHHHHheeeec
Confidence 9999999999999999999999999999 777655 999999999999999999984
|
|
| >PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2 | Back alignment and domain information |
|---|
| >smart00609 VIT Vault protein Inter-alpha-Trypsin domain | Back alignment and domain information |
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| >PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains | Back alignment and domain information |
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| >PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function | Back alignment and domain information |
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| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 462 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 51/320 (15%), Positives = 98/320 (30%), Gaps = 76/320 (23%)
Query: 40 RIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKK-----KKK 94
+I L+T +V L T S + P +V L L+ L +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTT 325
Query: 95 TYVSLAVKPTQLPDAPNETNYYTIVLANPLNTGETATLEILYILTHSLEPFPVEISQSES 154
L++ + D + + V + L T ++L +L P E +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---------PAEYRK--- 373
Query: 155 QLVYYRDSALILSPYHIKQQTTFIKIPSNKVESF----TRVEPTDRAGNEL-KYGPYE-D 208
+ ++ P IP+ + + + N+L KY E
Sbjct: 374 ---MFDRLSVF--PPS-------AHIPTILLSLIWFDVIKSDVMVVV-NKLHKYSLVEKQ 420
Query: 209 RPPYSYSPLLVHFE----NNNPFSVVEELVREVEIS---HWGNL--QITEQYKLAHAGAR 259
+ S ++ E N +++ +V I +L +QY +H G
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-H 479
Query: 260 H-KGI--------FSRV--DY---QSK-----PTFSGVSSFKHLLARLPPRVHSVYYRDE 300
H K I F V D+ + K ++ S + L +L +Y+
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK------FYKPY 533
Query: 301 IGNISTSHLRADSWKISELE 320
I + ++ +
Sbjct: 534 I----CDNDPKYERLVNAIL 549
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00