Citrus Sinensis ID: 012494

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
Protein Sequence
MSEKKEDSVSKSQNDDVDGAIVVEDSSEPGGGGDGGGGGGGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTEDGSLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFTAVPKQHSTFPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFSLYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGNAASERMTQGTSSDPRMEISEQSVKRDMRFEEGRNKLTGMMTDVLPAQVPRQSFAMRAQVEGLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccHHHEEEEEcccccccccccccccccccccccccccccHccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHccccccccccccccccccccccccHcccccccccccccHHHHccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHcccccHHHHHcccccccEEEcccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccc
Coil and Loop (DISEMBL)
msekkedsvsksqnddvdgaivvedssepggggdggggggggssssrvkgpwspeeDAVLSRLVSQFGarnwgmiargipgrsgkscrlrwcnqldpclkrkpftdeeDQIIISAHAVHGNKWAVIARLlpgrtdnaiknHWNSTLRRRYTDlgrfkpalgdmtedgsldrtkgsseetlsvgdvnplkplegrdvtmddrpnrledmaqtnggeftavpkqhstfpcpvgdinscklpegrdvtmndtpkmhEDRAERMEvefaagpkphptlprpvarVSAFSlynspsgltpcsgipravptqgplvqaprldlgICKFLedvcsepiipsqcgygccaspaghhshssllgpefvdyeeppafsshELISIATDLNNIAWIKsglensnvgvpgnaasermtqgtssdprmeisEQSVKRDMRFEEGRNKLTgmmtdvlpaqvprqsFAMRAQVEGLS
Flexible Loop (DISEMBL)
msekkedsvsksqnddvdgaIVVEDSSEPGGGGDGGGGGGGGSSSSRVKGPWSPEEDAVLSRLVSQfgarnwgmiargipgrsgkscrLRWCNQLDPCLKRKPFTDEEDQIIIsahavhgnkWAVIARLLpgrtdnaiknhwnstlrrrYTDLGrfkpalgdmtedgsldrtkgsseetlsvgdvnplkplegrdvtmddrPNRLEDMAQTNGGEFTAVPKQHSTFPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFaagpkphptlpRPVARVSAFSLYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGNAASermtqgtssdprmeiseqsvkrdmRFEEGRNKLTGmmtdvlpaqvprqSFAMRAQVEGLS
Low Complexity Region (SEG)
MSEKKEDSVSKSQNDDVDGAIVVEDSSEPggggdggggggggssssRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTEDGSLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFTAVPKQHSTFPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFSLYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGNAASERMTQGTSSDPRMEISEQSVKRDMRFEEGRNKLTGMMTDVLPAQVPRQSFAMRAQVEGLS
Disordered region (IsUnstruct)
**********************************************************VLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRF******************************************************************************************************************************AFSLY*****LTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGL*************************************************************************
Disordered Region (DISOPRED)
***************************************************WSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTL********************************************************************************************************************************************************************************************************************VDYEEPP**********************************************************************TGMMTDVLPAQVPRQSFAMRAQVE***
Disordered Region (DISEMBL)
***************DVDGAIVVEDSSEPG************************EEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTE**************LSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFTAVPKQHSTFPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFSLYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGN********************QSVKRDMRFEEGRNKLTGMMTDVLPAQVPRQSFAMRAQVEGLS
Disordered Region (DISPRO)
************QND***********************GGGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPA********************************************************************************************************************R*VARVSAFSLY*SPSG*TPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGNAAS*********************RD*R*****NKLTGMMTDVLPAQVPRQSFAMRA******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEKKEDSVSKSQNDDVDGAIVVEDSSEPGGGGDGGGGGGGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTEDGSLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFTAVPKQHSTFPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFSLYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGNAASERMTQGTSSDPRMEISEQSVKRDMRFEEGRNKLTGMMTDVLPAQVPRQSFAMRAQVEGLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	462	2.2.26 [Sep-21-2011]
Q9FDW1	305	Transcription factor MYB4	no	no	0.222	0.337	0.689	2e-39
Q03237	686	Myb-related protein B OS=	yes	no	0.233	0.157	0.559	3e-32
P52551	743	Myb-related protein B OS=	N/A	no	0.220	0.137	0.568	3e-32
P10242	640	Transcriptional activator	no	no	0.238	0.171	0.536	1e-31
P04197	657	Myb protein OS=Drosophila	yes	no	0.222	0.156	0.563	1e-31
P46200	640	Transcriptional activator	no	no	0.238	0.171	0.536	1e-31
P06876	636	Transcriptional activator	no	no	0.238	0.172	0.536	1e-31
P48972	704	Myb-related protein B OS=	no	no	0.233	0.153	0.550	2e-31
Q05935	728	Myb-related protein A OS=	N/A	no	0.246	0.156	0.517	2e-31
P10243	752	Myb-related protein A OS=	no	no	0.238	0.146	0.527	2e-31

>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 85/103 (82%)

Query: 47  RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
           R+KGPWSPEED  L RLV ++G RNW +I++ IPGRSGKSCRLRWCNQL P ++ +PF+ 
Sbjct: 4   RIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSA 63

Query: 107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           EED+ I  AHA  GNKWA IARLL GRTDNA+KNHWNSTL+R+
Sbjct: 64  EEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1

 Score =  140 bits (352), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 81/109 (74%), Gaps = 1/109 (0%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           VKGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 82  VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 141

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRF 156
           ED+II  AH V GN+WA IA+LLPGRTDNA+KNHWNST++R+  D G F
Sbjct: 142 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK-VDTGGF 189

Represses v-myb- and c-myb-mediated activation of the mim-1 gene, probably by competing with other myb proteins for binding sites. It is an inhibitory member of the myb family.

Gallus gallus (taxid: 9031)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 79/102 (77%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           VKGPW+ EED  +  LV ++G ++W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 82  VKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEE 141

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           ED+II  AH V GN+WA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 142 EDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

Xenopus laevis (taxid: 8355)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 79/110 (71%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFK 157
           ED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+    G  +
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQ 200

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P04197|MYB_DROME Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 78/103 (75%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGPW+ +ED ++ +LV  FG + W +IAR + GR GK CR RW N L+P +K+  +T++
Sbjct: 135 IKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLNGRIGKQCRERWHNHLNPNIKKTAWTEK 194

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRY 150
           ED+II  AH   GN+WA IA+ LPGRTDNAIKNHWNST+RR+Y
Sbjct: 195 EDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKY 237

DNA-binding protein that specifically recognizes the sequence 5'-YAAC[GT]G-3'. Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In follicle cells, the complex plays a central role in the site-specific DNA replication at the chorion loci. During development, the complex represses transcription of developmentally controlled E2F target genes.

Drosophila melanogaster (taxid: 7227)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 79/110 (71%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFK 157
           ED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+    G  +
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQ 200

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 79/110 (71%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFK 157
           ED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+    G  +
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQ 200

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|P48972|MYBB_MOUSE Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 81/109 (74%), Gaps = 1/109 (0%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           VKGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 82  VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEE 141

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRF 156
           ED+II  AH V GN+WA IA++LPGRTDNA+KNHWNST++R+  D G F
Sbjct: 142 EDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK-VDTGGF 189

Transcription factor involved in the regulation of cell survival, proliferation, and differentiation. Transactivates the expression of the CLU gene.

Mus musculus (taxid: 10090)

>sp|Q05935|MYBA_XENLA Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 81/114 (71%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           VKGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 85  VKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVKKSSWTEE 144

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALG 161
           ED+II SAH   GN+WA IA+LLPGRTDN+IKNHWNST++R+    G  +  + 
Sbjct: 145 EDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQEGYLQDLMN 198

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Xenopus laevis (taxid: 8355)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 79/110 (71%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 86  IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEE 145

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFK 157
           ED+II  AH   GN+WA IA+LLPGRTDN+IKNHWNST+RR+    G  +
Sbjct: 146 EDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEGYLQ 195

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
116734642	412	Myb transcription factor [Malus x domest	0.829	0.929	0.559	1e-128
225440558	410	PREDICTED: uncharacterized protein LOC10	0.792	0.892	0.553	1e-118
225449244	378	PREDICTED: transcription factor MYB104 [	0.805	0.984	0.524	1e-116
356553804	393	PREDICTED: uncharacterized protein LOC10	0.770	0.905	0.523	1e-115
356499141	483	PREDICTED: uncharacterized protein LOC10	0.863	0.826	0.486	1e-114
302398943	389	MYB domain class transcription factor [M	0.785	0.933	0.508	1e-107
71041078	391	MYB2 [Malus x domestica]	0.751	0.887	0.510	1e-103
255573943	390	r2r3-myb transcription factor, putative	0.746	0.884	0.507	1e-103
224101083	309	predicted protein [Populus trichocarpa]	0.638	0.954	0.56	2e-99
356496114	350	PREDICTED: uncharacterized protein LOC10	0.675	0.891	0.517	2e-98

>gi|116734642|gb|ABK20308.1| Myb transcription factor [Malus x domestica] gi|302398917|gb|ADL36753.1| MYB domain class transcription factor [Malus x domestica]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/427 (55%), Positives = 288/427 (67%), Gaps = 44/427 (10%)

Query: 41  GGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLK 100
           G   + +V+GPWSPEEDAVLSRLVS FGARNW +IARGIPGRSGKSCRLRWCNQLDPC+K
Sbjct: 25  GAVPNGKVRGPWSPEEDAVLSRLVSNFGARNWSLIARGIPGRSGKSCRLRWCNQLDPCVK 84

Query: 101 RKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPAL 160
           RKPF++EED+II+SAHA+HGNKWAVIA+LLPGRTDN IKNHWNSTLRR+  D GRF    
Sbjct: 85  RKPFSEEEDRIIVSAHAIHGNKWAVIAKLLPGRTDNGIKNHWNSTLRRKCFDKGRFNTGP 144

Query: 161 GDMTEDGSLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFTAVP 220
           G+M ED + DR   SSEETLSVG+++  K  EGR+V M++RPN+ +  +    G   A  
Sbjct: 145 GEMMEDDTFDRKNASSEETLSVGNISSFKTHEGREVLMENRPNQFDVRSHAKEGSGAAES 204

Query: 221 KQHSTFPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPR---- 276
           K +ST                                        A P+ HPTL      
Sbjct: 205 KHNST--------------------------------------LIAEPRDHPTLQSTICC 226

Query: 277 PVARVSAFSLYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQC 336
           PVARVSAFS+YN PS     S + R VP+ GPLV   +LD G   FLE  C+EP +P +C
Sbjct: 227 PVARVSAFSVYNRPSVPANASSLSRTVPSHGPLVPITKLDFGFDNFLEGACNEPTVPQRC 286

Query: 337 GYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGV 396
           G+GCC    G HS SSLLGPEFV+Y+EP  FSSHELISIATDLN IAWIK GLE++ + +
Sbjct: 287 GHGCCDRIEG-HSQSSLLGPEFVEYDEPLPFSSHELISIATDLNKIAWIKGGLESNGIRM 345

Query: 397 PGNAASERMTQGTSSDPRMEISEQSVKRD-MRFEEGRNKLTGMMTDVLPAQVPRQSFAMR 455
           P + AS+R+ Q  ++  +M +   +   D MRFEEGRNKL GMMTDVL  QVPRQ+FAM 
Sbjct: 346 PEHVASQRVFQAAATTLQMGLPANTPMNDHMRFEEGRNKLMGMMTDVLSTQVPRQTFAMP 405

Query: 456 AQVEGLS 462
            +VEGLS
Sbjct: 406 TEVEGLS 412

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440558|ref|XP_002276375.1| PREDICTED: uncharacterized protein LOC100256309 [Vitis vinifera] gi|297740274|emb|CBI30456.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/417 (55%), Positives = 283/417 (67%), Gaps = 51/417 (12%)

Query: 47  RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
           RVKGPWSPEEDA+LSRLVS+FGARNW +IARGI GRSGKSCRLRWCNQLDP +KRKPFTD
Sbjct: 44  RVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTD 103

Query: 107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTED 166
           EED+II++AHA+HGNKWA IARLL GRTDNAIKNHWNSTLRRR  ++ R K   G++ ED
Sbjct: 104 EEDRIIVAAHAIHGNKWASIARLLQGRTDNAIKNHWNSTLRRRCMEIDRAKLESGNIVED 163

Query: 167 GSLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFTAVPKQHSTF 226
            SLD+TK SSEET+S GD N  K LEG+DV   D      +MA  N              
Sbjct: 164 VSLDKTKASSEETMSCGDANSSKSLEGKDVNSSD------NMADQN-------------- 203

Query: 227 PCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFSL 286
                                      E+RA+ +E +F+   +  PTL RPVARVSAF++
Sbjct: 204 ---------------------------EERAQ-IEGQFSHEAQDPPTLFRPVARVSAFNV 235

Query: 287 YNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAG 346
           Y+S  G       PR VP QGPL+QA   D GICK ++    E ++P +CG+GCC SP G
Sbjct: 236 YSSLDGPEHAFPFPRPVPMQGPLIQASTPDAGICKLIQGDSGEQLVPQRCGHGCCESPRG 295

Query: 347 HHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGNAASERMT 406
            +  +SLLGPEFV++ EPP FSS EL +IATD++NIAW+KSGLENS V V G+AA   M+
Sbjct: 296 GNLGNSLLGPEFVEFSEPPPFSSFELAAIATDISNIAWLKSGLENSTVRVMGDAAGRTMS 355

Query: 407 QGTSSDPRMEISEQSVKRD-MRFEEGRNKLTGMMTDVLPAQVPRQSFAMRAQVEGLS 462
           +G  S  +M   E+S K D +RFEEG+NKL GMMTDV   Q+ +QSF++ A+V GLS
Sbjct: 356 RG--SQVQMARFEESRKNDHLRFEEGKNKLMGMMTDVRSTQIGKQSFSVPAKVGGLS 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449244|ref|XP_002276341.1| PREDICTED: transcription factor MYB104 [Vitis vinifera] gi|296086112|emb|CBI31553.3| unnamed protein product [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/437 (52%), Positives = 272/437 (62%), Gaps = 65/437 (14%)

Query: 13  QNDDVDGAIVVEDSSEPGGGGDGGGGGGGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNW 72
           Q D    A+V E+           G    G SSSRV+GPWSPEEDA+LS+LVS+FG RNW
Sbjct: 5   QVDSAAAALVDEEDVVTANDARRDGDTRAGGSSSRVRGPWSPEEDAILSQLVSKFGPRNW 64

Query: 73  GMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPG 132
            +IARGI GRSGKSCRLRWCNQLDPC+KRKPFT+EED+III+AH+ HGNKWA IARLLPG
Sbjct: 65  SLIARGISGRSGKSCRLRWCNQLDPCVKRKPFTEEEDRIIIAAHSHHGNKWASIARLLPG 124

Query: 133 RTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTEDGSLDRTKGSSEETLSVGDVNPLKPLE 192
           RTDNAIKNHWNSTL+R+   L  FKP  G M EDGS DRTK SSEET+S GD++  KP E
Sbjct: 125 RTDNAIKNHWNSTLKRQCKKLDMFKPISGSMLEDGSPDRTKASSEETMSPGDIDSRKPPE 184

Query: 193 GRDVT-MDDRPNRLEDMAQTNGGEFTAVPKQHSTFPCPVGDINSCKLPEGRDVTMNDTPK 251
           GRD + MDD P + E+  QT         + HS+   P                      
Sbjct: 185 GRDASLMDDGPYQCENKVQTT--------EDHSSISRP---------------------- 214

Query: 252 MHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFSLYNSPSGLTPCSGIPRAVPTQGPLVQ 311
                                     +ARVSAFS+YN PSGL   S   RA P +GPLVQ
Sbjct: 215 --------------------------MARVSAFSVYNPPSGLRVGSAFSRAAPMKGPLVQ 248

Query: 312 APRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHE 371
             +  L +CKFLE V SEP IP QCG+GCC +P G  S  SLLGPEF++Y EPP FSSHE
Sbjct: 249 TSKPHLEVCKFLEGVYSEPTIPLQCGHGCCEAPTGGQSQGSLLGPEFIEYMEPPPFSSHE 308

Query: 372 LISIATDLNNIAWIKSGLENSNVGVPGNAASERMTQGTSSDPRMEISEQSVKRDMRFEEG 431
           L SIA +LN+IAWIKSGL NS+  +    A +R+  G ++  + E         +R EEG
Sbjct: 309 LASIAAELNSIAWIKSGLVNSSSSMQDETAGQRLCMGAAAQLKNE--------HLRLEEG 360

Query: 432 RNKLTGMMTDVLPAQVP 448
           RNKL GMM +VLP Q+P
Sbjct: 361 RNKLMGMMPEVLPTQMP 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553804|ref|XP_003545242.1| PREDICTED: uncharacterized protein LOC100781228 [Glycine max]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/422 (52%), Positives = 272/422 (64%), Gaps = 66/422 (15%)

Query: 43  SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRK 102
           +++ RVKGPWSPEEDA+LSRLV+QFGARNW MIARG+PGRSGKSCRLRWCNQLDPC+KRK
Sbjct: 32  TAAGRVKGPWSPEEDALLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRK 91

Query: 103 PFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGD 162
           PFT+EED II+SAHA+HGNKWA IARLLPGRTDNAIKNHWNSTL+RR  ++GR+ PA  D
Sbjct: 92  PFTEEEDSIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMEMGRYVPAHAD 151

Query: 163 MTED--GSLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFTAVP 220
           + ED  GS D+TK SSEET+S+GD+N   P E R+V MD                     
Sbjct: 152 VMEDGTGSFDKTKASSEETMSIGDINSKNPAEVRNVMMD--------------------- 190

Query: 221 KQHSTFPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVAR 280
                        N  K P   D  + + P +H                      RPVAR
Sbjct: 191 -------------NENKPPTKDDAKVEEHPTLH----------------------RPVAR 215

Query: 281 VSAFSLYNSP--SGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGY 338
           VSAFS+YN+P  S +  CS   +  P Q PL+Q+P+ D+G CK  +D+  EP++PSQCG+
Sbjct: 216 VSAFSVYNTPGRSTMGSCS---KMFPRQSPLIQSPKPDVGSCKLFDDIDCEPMVPSQCGH 272

Query: 339 GCCASPAGH-HSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVP 397
           GCC   +   HSH SLLGPEFVDY E P+ SSH  ISIATDLNNIAWIKSGLEN + GV 
Sbjct: 273 GCCTGDSRESHSHGSLLGPEFVDYLESPS-SSHAFISIATDLNNIAWIKSGLENCSTGVT 331

Query: 398 GNAASERMTQGTSSDPRMEISEQSVKRDM-RFEEGRNKLTGMMTDVLPAQVPRQSFAMRA 456
            N A+   ++G +S  +     Q +K    +FEEG     G M +VL  ++ RQ +AM A
Sbjct: 332 ENTANLTASRGVASALQTNFLGQDLKNGYGQFEEGHGMFLGAMQEVLSTKMARQHYAMPA 391

Query: 457 QV 458
           +V
Sbjct: 392 EV 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499141|ref|XP_003518401.1| PREDICTED: uncharacterized protein LOC100817109 [Glycine max]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/465 (48%), Positives = 286/465 (61%), Gaps = 66/465 (14%)

Query: 42  GSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKR 101
           G  +  VKGPWSPEEDA+LSRLV+QFGARNWGMIARG+PGRS KSCRLRWCNQLDPCLKR
Sbjct: 37  GLVAGSVKGPWSPEEDALLSRLVAQFGARNWGMIARGVPGRSSKSCRLRWCNQLDPCLKR 96

Query: 102 KPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALG 161
           KPFT+EED II+SAHA+HGNKWA+IA+LLPGRTDNAIKNHWNSTL R+  ++GR+ PA  
Sbjct: 97  KPFTEEEDNIIVSAHAIHGNKWAIIAKLLPGRTDNAIKNHWNSTLTRKRMEMGRYVPAHA 156

Query: 162 DMTEDGS--LDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPN-------RLEDMAQ-- 210
           D+ EDG+   ++TK SSEET+S+GD+N L P E R+V M+D          ++E+ A   
Sbjct: 157 DVIEDGTGNFEKTKASSEETMSIGDINSLNPAEVRNVMMNDETKPPTKDDAKVEEHATLH 216

Query: 211 ------------------TNGGEFTAVPKQHSTFPCPVGDINSCKLPEGRD----VTMND 248
                             T G      P+Q      P  D+  CKL +  D    V+  D
Sbjct: 217 RPVARVSAFSFYNSPGRPTMGSCSKMFPRQSPLIQSPKPDVGPCKLFDNIDCEPMVSSKD 276

Query: 249 TPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFSLYNSPSGLTPCSGIPRAVPTQGP 308
             K+ E                H TL RPVARVSAFS YNSP G        +  P Q P
Sbjct: 277 DAKVEE----------------HATLHRPVARVSAFSFYNSP-GRPTMGSCSKMFPRQSP 319

Query: 309 LVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGH-HSHSSLLGPEFVDYEEPPAF 367
           L+Q+P+ D+G CK  +++  EP++PSQCG+GCC+  +   H H SLLGPEFVDY E P F
Sbjct: 320 LIQSPKPDVGSCKLFDNIDCEPMVPSQCGHGCCSGDSRESHLHGSLLGPEFVDYLESP-F 378

Query: 368 SSHELISIATDL-------------NNIAWIKSGLENSNVGVPGNAASERMTQGTSSDPR 414
           SSH  +SIATDL             NNIAWIKSGLEN + GV  N A+   +QG ++  +
Sbjct: 379 SSHAFLSIATDLNCCPNYVDQFINMNNIAWIKSGLENCSTGVTANTANLTASQGVATASQ 438

Query: 415 MEISEQSVKRDM-RFEEGRNKLTGMMTDVLPAQVPRQSFAMRAQV 458
                + +K    +FEEG     G + +VL  ++ RQ +A+ A+V
Sbjct: 439 ANFLREDLKNGYGQFEEGHGMFLGAIQEVLSTKMARQHYAVPAEV 483

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398943|gb|ADL36766.1| MYB domain class transcription factor [Malus x domestica]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/419 (50%), Positives = 262/419 (62%), Gaps = 56/419 (13%)

Query: 31  GGGDGG----GGGGGGSSSSR--VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSG 84
           GG D G     GGG    S R  VKGPWSPEEDAVL+ LVS FGARNW +IARGI GRSG
Sbjct: 19  GGVDSGEEAVAGGGSRRKSGRDNVKGPWSPEEDAVLTWLVSNFGARNWSLIARGIDGRSG 78

Query: 85  KSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNS 144
           KSCRLRWCNQLDP +KRKPFT EED++I++AHA+HGNKWA IARLLPGRTDNAIKNHWNS
Sbjct: 79  KSCRLRWCNQLDPAVKRKPFTHEEDRMIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNS 138

Query: 145 TLRRRYTDLGRFKPALGDMTEDGSLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNR 204
           TL+RR  D  + K   G+M ED S D+TKGSSEET S GDVN  K +EGR+V+  +    
Sbjct: 139 TLKRRCMDTDKIKLESGNMVEDVSFDKTKGSSEET-SYGDVNSSKSMEGREVSSLE---H 194

Query: 205 LEDMAQTNGGEFTAVPKQHSTFPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEF 264
           ++D  + NG                                               EV+F
Sbjct: 195 MDDQDEYNGSS---------------------------------------------EVQF 209

Query: 265 AAGPKPHPTLPRPVARVSAFSLYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLE 324
           +      PTL RP+AR+SAFS+YN  +   P S  PR +P QGPLVQA +LD+GI KFLE
Sbjct: 210 SHEATEQPTLFRPMARISAFSVYNQSNSQEPASSFPRPIPVQGPLVQASKLDVGINKFLE 269

Query: 325 DVCSEPIIPSQCGYGCCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAW 384
            V  E  +P +CG+GCC + +G +  +SLLGPEFV++ EPP F S EL +IATD++N+AW
Sbjct: 270 GVYGEQSVPDRCGHGCCRAESGMNFQNSLLGPEFVEFSEPPLFPSFELAAIATDISNLAW 329

Query: 385 IKSGLENSNVGVPGNAASERMTQGTSSDPRMEISEQSVKRDMRFEEGRNKLTGMMTDVL 443
           +KSGLEN+ V   G  A  R+T   S D      E  +      EE +++L GM T+VL
Sbjct: 330 LKSGLENNIVRAVGETAG-RITTHGSQDQTGRFEESRMNHLFPTEERKDRLMGMKTNVL 387

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71041078|gb|AAZ20427.1| MYB2 [Malus x domestica]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/396 (51%), Positives = 248/396 (62%), Gaps = 49/396 (12%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           VKGPWSPEEDAVLSRLVS FGARNW +IARGI GRSGKSCRLRWCNQLDP +KRKPFTD 
Sbjct: 43  VKGPWSPEEDAVLSRLVSNFGARNWSLIARGIDGRSGKSCRLRWCNQLDPAVKRKPFTDA 102

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTEDG 167
           ED++I++AHAVHGNKWA IARLLPGRTDNAIKNHWNSTL+RR  D  + K   G+M ED 
Sbjct: 103 EDRMIVAAHAVHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMDPEKIKLESGNMVEDV 162

Query: 168 SLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFTAVPKQHSTFP 227
           SLD+TKGSSEET S GDVN  K +EGR+V+       ++D  + NG              
Sbjct: 163 SLDKTKGSSEETFSYGDVNSSKSMEGREVS---SFQHMDDQDEYNGSS------------ 207

Query: 228 CPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFSLY 287
                                            EV+F+      P L RPVAR+SAFS+Y
Sbjct: 208 ---------------------------------EVQFSHEATEQPNLFRPVARISAFSVY 234

Query: 288 NSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAGH 347
           N  +   P S  PR +P  GPLV+  +LD+GI KFL+ V  E  +P QC +GCC +  G 
Sbjct: 235 NQSNSQEPESSFPRPIPAPGPLVRESKLDVGISKFLKGVYGELSVPDQCAHGCCCAQNGM 294

Query: 348 HSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGNAASERMTQ 407
           +  +SLLGPEFV++ EPP+F S EL +IATD++N+AW+KSGLEN+ V   G+AA  R+T 
Sbjct: 295 NFQNSLLGPEFVEFSEPPSFPSFELAAIATDISNLAWLKSGLENNRVRGMGDAAG-RITT 353

Query: 408 GTSSDPRMEISEQSVKRDMRFEEGRNKLTGMMTDVL 443
             S        +         EE  ++  GM T+VL
Sbjct: 354 HESQGQMGRFEDSRTNHLFPVEERNDRRMGMKTNVL 389

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573943|ref|XP_002527890.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223532741|gb|EEF34521.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/400 (50%), Positives = 251/400 (62%), Gaps = 55/400 (13%)

Query: 44  SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKP 103
           S  RVKGPWSPEEDA+LSRLVS+FGARNW +IARGI GRSGKSCRLRWCNQLDP +KRKP
Sbjct: 44  SKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKP 103

Query: 104 FTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDM 163
           FTDEED+II +AHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR+ T   R + A G+M
Sbjct: 104 FTDEEDRIIAAAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRKSTVCQRTRLASGNM 163

Query: 164 TEDGSLDRTKGSSEETLSVGDVNPLKPLEGRDV-TMDDRPNRLEDMAQTNGGEFTAVPKQ 222
            +D  LD+ K SSEET+S GD N  K LEG+DV ++D+  ++ E+           VP Q
Sbjct: 164 DQDAYLDKAKASSEETISCGDANSFKSLEGKDVSSLDNMDDQCEE----------KVPSQ 213

Query: 223 HSTFPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVS 282
                                      P  +E              K  PT+ RP AR S
Sbjct: 214 --------------------------IPSTNE-------------AKELPTVFRPRARFS 234

Query: 283 AFSLYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCA 342
           AF++YN   G    S   R+VP  GP+VQ    D GICK L+    E ++P  CG+GCC 
Sbjct: 235 AFNVYNPVDGPEAASPCLRSVPVHGPIVQTSTADDGICKLLDGAYCEQMVPHHCGHGCCE 294

Query: 343 SPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGNAAS 402
           +  G+   +SLLGPEFVD  EPP+F S EL +IA D++N+AW+KSGLEN+NV V G  AS
Sbjct: 295 AQNGNSKQNSLLGPEFVDSLEPPSFPSFELAAIARDISNLAWLKSGLENNNVRVMGETAS 354

Query: 403 ERMTQGTSSDPRMEISEQSVKRDMRFEEGRNKLTGMMTDV 442
                G+       + +  +     F+EG+NKL G++T+V
Sbjct: 355 RITPHGSG-----HLEDSRISGKFHFDEGKNKLRGVITNV 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101083|ref|XP_002312135.1| predicted protein [Populus trichocarpa] gi|222851955|gb|EEE89502.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/350 (56%), Positives = 233/350 (66%), Gaps = 55/350 (15%)

Query: 106 DEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTE 165
           +EED+III+AHA HGNKWA IARLLPGRTDN+IKNHWNSTLRRR+ DL R KP   D+ E
Sbjct: 7   EEEDRIIIAAHAKHGNKWAAIARLLPGRTDNSIKNHWNSTLRRRWADLIRLKPGTSDVME 66

Query: 166 DGSLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFTAVPKQHST 225
           DGS++ T+ SSEETLSV                                           
Sbjct: 67  DGSIEITRASSEETLSV------------------------------------------- 83

Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAER------MEVEFAAGPKPHPTLPRPVA 279
             C   DI+S + PE RDVT++D P  HED+A+        EV  A  P  +PTLPRP A
Sbjct: 84  --C---DISSSQPPEVRDVTIDDQPSQHEDKAQTDTIPQTNEVTVATEPHGNPTLPRPEA 138

Query: 280 RVSAFSLYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYG 339
           RVSAF +YN PSGL   SG+ R +PT GP VQ P+ DLG CKFLEDV  EPIIPS+CGYG
Sbjct: 139 RVSAFKVYNPPSGLKMSSGLTRTLPTHGPSVQTPKPDLGSCKFLEDVHCEPIIPSRCGYG 198

Query: 340 CCASPAGHHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGN 399
           CCA+P+G H  SSLLGPEFV+YEEPP FSS ELISIATDLNNIAW+KSGLENS+ G+P N
Sbjct: 199 CCATPSGGHPPSSLLGPEFVEYEEPPPFSSQELISIATDLNNIAWMKSGLENSSTGIPSN 258

Query: 400 AASERMTQGTSSDPRMEISEQSVKR-DMRFEEGRNKLTGMMTDVLPAQVP 448
           AAS RM+QGT  D +M +SEQ+++   M FEEGR++L G M   +  Q+P
Sbjct: 259 AASYRMSQGTPVDSQMGMSEQNLRNGHMHFEEGRSRLMGTMAGTISTQMP 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496114|ref|XP_003516915.1| PREDICTED: uncharacterized protein LOC100811740 [Glycine max]

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/363 (51%), Positives = 240/363 (66%), Gaps = 51/363 (14%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           VKGPWSPEEDA+LSRLV +FGARNW +IARGI GRSGKSCRLRWCNQLDP +KRKPFTDE
Sbjct: 32  VKGPWSPEEDAILSRLVGKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDE 91

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTEDG 167
           ED++I++AHA+HGNKWA IARLLPGRTDNAIKNHWNSTLRRR       K       ED 
Sbjct: 92  EDRMIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVGHDTIKLESVSFMEDV 151

Query: 168 SLDRTKGSSEETLSVGDVNPLKPLEGRDV-TMDDRPNRLEDMAQTNGGEFTAVPKQHSTF 226
           SL++ K SSE+TLS GDV+ LK  EGRDV +M+   ++ +D AQT G             
Sbjct: 152 SLEKAKASSEDTLSCGDVS-LKSSEGRDVSSMEIMDDKSDDKAQTEG------------- 197

Query: 227 PCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFSL 286
                                   ++H +             K  PTL RPVARVSAF++
Sbjct: 198 ------------------------QIHHE------------VKDLPTLFRPVARVSAFNV 221

Query: 287 YNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGICKFLEDVCSEPIIPSQCGYGCCASPAG 346
           Y+S  G  P + I R VP QG ++Q+ + D+  C+ LE +C +  +P QCG+GCCA+P G
Sbjct: 222 YHSFDGTQPSTSIKRPVPMQGAVLQSSKPDMEFCRMLEGICGDQSVPHQCGHGCCAAPDG 281

Query: 347 HHSHSSLLGPEFVDYEEPPAFSSHELISIATDLNNIAWIKSGLENSNVGVPGNAASERMT 406
             S SSLLGPEFV++ EPP+F + EL +IATD++N+AW+KSGLE+S+  + GN +   ++
Sbjct: 282 RKSESSLLGPEFVEFSEPPSFPNFELAAIATDISNLAWLKSGLESSSAKMMGNTSGRVVS 341

Query: 407 QGT 409
            G+
Sbjct: 342 NGS 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
TAIR|locus:2061242	367	MYB25 "myb domain protein 25"	0.255	0.321	0.689	3.7e-68
TAIR|locus:2078961	399	MYB109 "myb domain protein 109	0.406	0.471	0.552	1e-52
TAIR|locus:2083489	393	MYB1 "myb domain protein 1" [A	0.5	0.587	0.486	4.6e-50
TAIR|locus:2158212	305	MYBR1 "AT5G67300" [Arabidopsis	0.222	0.337	0.689	1.7e-40
TAIR|locus:2058613	309	MYB70 "myb domain protein 70"	0.222	0.333	0.699	5.8e-40
TAIR|locus:2115060	320	MYB73 "myb domain protein 73"	0.322	0.465	0.544	9.9e-39
TAIR|locus:2083113	301	MYB77 "myb domain protein 77"	0.222	0.342	0.669	4.9e-37
TAIR|locus:2083599	510	MYB3R-3 "myb domain protein 3r	0.274	0.249	0.488	8.3e-35
MGI|MGI:101785	704	Mybl2 "myeloblastosis oncogene	0.238	0.156	0.553	5.9e-34
TAIR|locus:2030903	249	MYB52 "myb domain protein 52"	0.261	0.485	0.52	1.5e-33

TAIR|locus:2061242 MYB25 "myb domain protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
 Identities = 82/119 (68%), Positives = 96/119 (80%)

Query:    47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
             +VKGPW PE+D  L+RLV   G RNW +I+RGIPGRSGKSCRLRWCNQLDP LKRKPF+D
Sbjct:    48 KVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSD 107

Query:   107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTE 165
             EE+ +I+SA AV GNKW+VIA+LLPGRTDNAIKNHWNS LRR+  +  +  P L   TE
Sbjct:   108 EEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAEQWKI-PLLMSNTE 165

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2078961 MYB109 "myb domain protein 109" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 111/201 (55%), Positives = 142/201 (70%)

Query:    47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
             +VKGPWS EEDAVL++LV + G RNW +IARGIPGRSGKSCRLRWCNQLDPCLKRKPF+D
Sbjct:    54 KVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRKPFSD 113

Query:   107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDL---GRF--KPALG 161
             EED++IISAHAVHGNKWAVIA+LL GRTDNAIKNHWNSTLRR+Y DL   G++       
Sbjct:   114 EEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNNGQWMANSVTT 173

Query:   162 DMTEDGSLDRTKG--SSEETLSVGDVN--PLKPLEGRDVTMDD---RPNRLEDMAQTNGG 214
                ++ ++D T    SS++ L  GD+N  P KP +  DV M++    P   ++  +    
Sbjct:   174 ASVKNENVDETTNPPSSKQQLPQGDINSSPPKPPQVSDVVMEEAANEPQEPQEQQEQAPP 233

Query:   215 EFTAVPKQHSTFPCPVGDINS 235
               + VP +++ F  PV  + +
Sbjct:   234 VVSNVPTENNVFR-PVARVGA 253

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0000303 "response to superoxide" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2083489 MYB1 "myb domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 122/251 (48%), Positives = 146/251 (58%)

Query:     3 EKKEDSVSKSQNDDVDGAIVVEDSSEPXXXXXXXXXXXXXXXXXRVKGPWSPEEDAVLSR 62
             E +E S+ +   D  DG  V ED++                   RVKGPWS EED VLS 
Sbjct:    17 EVEESSIGRGDCDG-DGGDVGEDAA-------GFVGTSGRGRRDRVKGPWSKEEDDVLSE 68

Query:    63 LVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNK 122
             LV + GARNW  IAR IPGRSGKSCRLRWCNQL+P L R  FT+ EDQ II+AHA+HGNK
Sbjct:    69 LVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFTEVEDQAIIAAHAIHGNK 128

Query:   123 WAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKP-ALGDMT-EDGSLDRTK--GSSEE 178
             WAVIA+LLPGRTDNAIKNHWNS LRRR+ D  + K    G +  +D   DRT    SSEE
Sbjct:   129 WAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKAKNIGTGSLVVDDSGFDRTTTVASSEE 188

Query:   179 TLSVGD----VNPLKPLEGRDVTMDDRPNRLEDMAQTNG-GEFTAVPKQHSTF--PCP-V 230
             TLS G       P+   EG++ T     +  + + +TNG G      K   T   P P +
Sbjct:   189 TLSSGGGCHVTTPIVSPEGKEATTSMEMSEEQCVEKTNGEGISRQDDKDPPTLFRPVPRL 248

Query:   231 GDINSCKLPEG 241
                N+C   EG
Sbjct:   249 SSFNACNHMEG 259

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2158212 MYBR1 "AT5G67300" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 71/103 (68%), Positives = 85/103 (82%)

Query:    47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
             R+KGPWSPEED  L RLV ++G RNW +I++ IPGRSGKSCRLRWCNQL P ++ +PF+ 
Sbjct:     4 RIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSA 63

Query:   107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
             EED+ I  AHA  GNKWA IARLL GRTDNA+KNHWNSTL+R+
Sbjct:    64 EEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2058613 MYB70 "myb domain protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 72/103 (69%), Positives = 83/103 (80%)

Query:    47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
             R+KGPWSPEED +L  LV + G RNW +I++ IPGRSGKSCRLRWCNQL P ++ + FT 
Sbjct:    11 RIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRGFTA 70

Query:   107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
             EED  II AHA  GNKWA IARLL GRTDNAIKNHWNSTL+R+
Sbjct:    71 EEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2115060 MYB73 "myb domain protein 73" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 86/158 (54%), Positives = 108/158 (68%)

Query:    47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
             R+KGPWSPEED +L RLV + G RNW +I++ IPGRSGKSCRLRWCNQL P ++ + F+ 
Sbjct:    11 RIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRAFSQ 70

Query:   107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYT------DLGRFKPAL 160
             EED+ II AHA  GNKWA I+RLL GRTDNAIKNHWNSTL+R+ +      D G      
Sbjct:    71 EEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGGNGGYD 130

Query:   161 GDMTEDGSLDRTKGSSEETLSVG-DVNPLKPLEGRDVT 197
             G++ E+  L RT  S    +S G  ++P  P  G DV+
Sbjct:   131 GNLGEEQPLKRT-ASGGGGVSTGLYMSPGSP-SGSDVS 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2083113 MYB77 "myb domain protein 77" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 69/103 (66%), Positives = 84/103 (81%)

Query:    47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
             RVKGPWS EED  L R+V ++G RNW  I++ IPGRSGKSCRLRWCNQL P ++ +PF+ 
Sbjct:     4 RVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFSP 63

Query:   107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
             EED+ I++A A  GNKWA IARLL GRTDNA+KNHWNSTL+R+
Sbjct:    64 EEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0048527 "lateral root development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2083599 MYB3R-3 "myb domain protein 3r-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 8.3e-35, Sum P(2) = 8.3e-35
 Identities = 65/133 (48%), Positives = 88/133 (66%)

Query:    48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
             +KGPW+ EED  +  LV ++G   W +IA+ +PGR GK CR RW N L+P + +  +T E
Sbjct:   134 IKGPWTHEEDEKIVELVEKYGPAKWSIIAQSLPGRIGKQCRERWHNHLNPDINKDAWTTE 193

Query:   108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR---YTDLGRFKPALGDMT 164
             E+  +++AH  HGNKWA IA++LPGRTDNAIKNHWNS+L+++   Y   GR  P     T
Sbjct:   194 EEVALMNAHRSHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKSEFYLLTGRLPPPT--TT 251

Query:   165 EDGSLDR-TKGSS 176
              +G  D  TK SS
Sbjct:   252 RNGVPDSVTKRSS 264

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

MGI|MGI:101785 Mybl2 "myeloblastosis oncogene-like 2" [Mus musculus (taxid:10090)]

 Score = 341 (125.1 bits), Expect = 5.9e-34, Sum P(3) = 5.9e-34
 Identities = 62/112 (55%), Positives = 83/112 (74%)

Query:    48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
             VKGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct:    82 VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEE 141

Query:   108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPA 159
             ED+II  AH V GN+WA IA++LPGRTDNA+KNHWNST++R+  D G F PA
Sbjct:   142 EDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK-VDTGGF-PA 191

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0031523 "Myb complex" evidence=IDA

GO:0090307 "spindle assembly involved in mitosis" evidence=IDA

TAIR|locus:2030903 MYB52 "myb domain protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/125 (52%), Positives = 87/125 (69%)

Query:    49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
             +G W P ED  L  LV QFG  NW  IA+ + GRSGKSCRLRW NQLDP + R PFT+EE
Sbjct:     5 RGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTEEE 64

Query:   109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKP-ALGDMTEDG 167
             ++ ++++H +HGN+W+VIAR  PGRTDNA+KNHW+  + RR  +  + +P  LG    DG
Sbjct:    65 EERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLG---HDG 121

Query:   168 SLDRT 172
             ++  T
Sbjct:   122 TVAAT 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	462
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	5e-27
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	7e-24
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	9e-21
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-16
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-16
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-14
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	7e-14
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	8e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-09
cd11655	57	cd11655, rap1_myb-like, DNA-binding modules of yea	0.002
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.002

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  112 bits (281), Expect = 5e-27
 Identities = 63/140 (45%), Positives = 80/140 (57%), Gaps = 7/140 (5%)

Query: 49  KGPWSPEEDAVLSRLVSQFGARNWGMIAR--GIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
           KG WSPEED  L R ++++G   W  + +  G+  R GKSCRLRW N L P LKR  F+ 
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ-RCGKSCRLRWINYLRPDLKRGTFSQ 72

Query: 107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNS----TLRRRYTDLGRFKPALGD 162
           +E+ +II  HAV GN+W+ IA  LPGRTDN IKN WNS     LR+R  D    KP    
Sbjct: 73  QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEV 132

Query: 163 MTEDGSLDRTKGSSEETLSV 182
              +     T   S++  SV
Sbjct: 133 ENGEDKNPPTDDKSDKASSV 152

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 99.8 bits (248), Expect = 7e-24
 Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 14/148 (9%)

Query: 49  KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSG-----KSCRLRWCNQLDPCLKRKP 103
           +GPW+ EED +L   + + G   W    R +P R+G     KSCRLRW N L P +KR  
Sbjct: 25  RGPWTVEEDEILVSFIKKEGEGRW----RSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGG 80

Query: 104 FTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDM 163
            T +E+ +I+  H + GN+W++IA  +PGRTDN IKN+WN+ LR++    G   P     
Sbjct: 81  ITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG-IDPQTHKP 139

Query: 164 TEDGSLDRTKGSSEETLSVGDVNPLKPL 191
            +  ++ +     EE +S G   P++P+
Sbjct: 140 LDANNIHK----PEEEVSGGQKYPIEPI 163

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 94.5 bits (235), Expect = 9e-21
 Identities = 34/103 (33%), Positives = 49/103 (47%)

Query: 47  RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
           R  G W   ED  L  LV + G  NW  +A  +   +GK    RW N L+P LK+K +++
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSE 77

Query: 107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           EED+ +I      G +W+ IA     RT       + +TL   
Sbjct: 78  EEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDL 120

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 72.9 bits (180), Expect = 1e-16
 Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 101 RKPFTDEEDQIIISAHAVHGNK-WAVIARLLPGRTDNAIKNHWNSTL 146
           R P+T EED+++I A   HGN  W+ IA+ LPGRTDN  KN WN+ L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 71.4 bits (176), Expect = 4e-16
 Identities = 22/47 (46%), Positives = 30/47 (63%)

Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL 95
          +GPW+PEED +L   V + G  NW  IA+ +PGR+   C+ RW N L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          KG W+ EED +L  LV ++G  NW  IA+ +PGR+ + CR RW N L P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 52  WSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQI 111
           W+ EED  L +LV ++G  +W  IA  + GR+  +CR RW  +L P   R P+T EEDQ 
Sbjct: 1   WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 112 I 112
           +
Sbjct: 59  L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 65.3 bits (160), Expect = 7e-14
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 101 RKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRR 148
           +  +T+EED+++I     +G N W  IA+ LPGRT    +  W + L+ 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 51 PWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCN 93
          PW+ EED +L   V ++G  NW  IA+ +PGR+ K CR RW N
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 62.2 bits (152), Expect = 8e-13
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 103 PFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTL 146
           P+T+EED++++ A   +G N W  IA+ LPGRT    +  W + L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 104 FTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           +T+EED+ ++     +GN W  IA  L GRT +A ++ W   LR +
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPK 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212554 cd11655, rap1_myb-like, DNA-binding modules of yeast Rap1 and related proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 101 RKPFTDEEDQIIISAHAVH--------GNK-WAVIARLLPGRTDNAIKNHWNSTLRR 148
           R  FT E+D I+    A +        GN  +  +A   P  T  + ++ +   L +
Sbjct: 1   RTKFTAEDDYILCKYVAKYGRRGRGRLGNSFYKELAEEHPRHTWQSWRDRYRKFLSK 57

Yeast Rap1 DNA-binding activity is mediated by a pair of DNA-binding modules comprised of 2 3-helix bundles with an N-terminal arm, closely matching the structure of homeodomain and myb-type proteins. Human Rap1 has a single myb-like module, and may not bind DNA directly. Rap1, identified in budding yeast as repressor-activator protein 1, is a conserved telomere binding protein, also identified in fission yeast and mammals. In Saccharomyces cerevisiae, Rap1 directly binds DNA and is involved in transcriptional activation, gene silencing, as well as binding at numerous binding sites at each telomere, where it functions in telomere length regulation, telomeric position effect gene silencing and telomere end protection. Human Rap1 apparently does not bind telomeric DNA directly, but binds telomere repeat binding factor 2 (TRF2) via the Rap C-terminal domain (RCT). Rap1 may act by suppressing non-homologous end-joining. Yeast Rap1 has 2 myb-type DNA binding modules, a BRCT domain, and a RCT domain that recruits Sir3 and Sir4 proteins for gene silencing and Rif1 and Rif2 for telomere length maintenance. Human Rap1 has a similar domain architecture but has a single myb-like domain. Length = 57

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 51 PWSPEEDAVLSRLVSQFGARNWGMI---ARGIPGRSGKSCRLRWCN 93
           W+ EED  L   V ++G  NW  I      +  R+    + +W N
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	462
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.98
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
PLN03091	459	hypothetical protein; Provisional	99.96
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.75
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.68
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.61
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.6
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.57
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.35
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.35
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.28
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.13
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.11
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.05
PLN03212	249	Transcription repressor MYB5; Provisional	99.04
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.0
PLN03091	459	hypothetical protein; Provisional	98.91
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.89
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.86
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.83
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.22
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.11
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.52
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.43
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.42
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.39
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.28
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.28
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.94
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.63
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.56
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.5
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.45
PRK13923	170	putative spore coat protein regulator protein YlbO	96.44
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.43
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.7
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.54
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.47
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.28
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.14
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.81
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.72
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.49
PRK13923	170	putative spore coat protein regulator protein YlbO	93.26
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.37
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.71
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.49
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.45
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	90.95
KOG4282	345	consensus Transcription factor GT-2 and related pr	89.51
KOG1194	534	consensus Predicted DNA-binding protein, contains	89.51
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.0
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	85.07
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	84.43
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	82.15

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.98  E-value=1e-32  Score=266.80  Aligned_cols=108  Identities=50%  Similarity=0.919  Sum_probs=105.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC-CCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHH
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP-GRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAV  125 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp-gRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWsk  125 (462)
                      ..||+||+|||++|+++|.+||.++|..|++.++ +|++|+||+||.|||+|.++++.||+|||++|++||..+||+|+.
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            4579999999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHHHhhhhhcC
Q 012494          126 IARLLPGRTDNAIKNHWNSTLRRRYTDLG  154 (462)
Q Consensus       126 IAk~LPGRT~~QcKnRWnslLkkkl~~~~  154 (462)
                      ||++|||||++.|||+|++.||+|+...+
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999998877

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=3.9e-31  Score=256.94  Aligned_cols=113  Identities=41%  Similarity=0.795  Sum_probs=107.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC-CCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCc
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGI-PGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNK  122 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~L-pgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~Gnk  122 (462)
                      ....+|++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++..||++
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            677999999999999999999999998999999988 6999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 012494          123 WAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRF  156 (462)
Q Consensus       123 WskIAk~LPGRT~~QcKnRWnslLkkkl~~~~~~  156 (462)
                      |+.||+.|||||+++|||||+.++++++...+..
T Consensus       100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~  133 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGID  133 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCC
Confidence            9999999999999999999999999998876543

>PLN03091 hypothetical protein; Provisional

Probab=99.96  E-value=2.1e-29  Score=260.26  Aligned_cols=113  Identities=48%  Similarity=0.852  Sum_probs=107.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC-CCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCc
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGI-PGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNK  122 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~L-pgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~Gnk  122 (462)
                      ..+.+||+||+|||++|+++|.+||.++|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++++||++
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            467899999999999999999999999999999988 5999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 012494          123 WAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRF  156 (462)
Q Consensus       123 WskIAk~LPGRT~~QcKnRWnslLkkkl~~~~~~  156 (462)
                      |++||++|+|||+++|||||+.+|++++...+..
T Consensus        89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~  122 (459)
T PLN03091         89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGID  122 (459)
T ss_pred             hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999998876543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=6e-19  Score=184.96  Aligned_cols=155  Identities=24%  Similarity=0.473  Sum_probs=132.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHH
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVI  126 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskI  126 (462)
                      ++.|.|+.-||++|..+|.+||.+.|++|++.++.++.+||+.||..+|||.+++..|+.|||.+||.+++.+..+|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCCCCCccCCCCCCCCCCCCccccCCCCCC---CCCCCCCCCCCCCCcc
Q 012494          127 ARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTEDGSLDRTKGSSEETLSVGDVNP---LKPLEGRDVTMDDRPN  203 (462)
Q Consensus       127 Ak~LPGRT~~QcKnRWnslLkkkl~~~~~~k~~~~~~~ed~sldktk~SSee~ls~gdl~p---~~p~~~~ei~mDd~~~  203 (462)
                      |..| |||.+||..||+.+|-.........         ++..+       ..|..|+++|   .++.+++.++||++++
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~~~~~---------~~~~D-------~rLk~gE~ePn~e~~~aRpd~~dmdEde~  147 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSYHYHS---------EPYID-------AKLKEGEIEPNQETNPARPDGFDMDEDEG  147 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhhhccc---------ccccc-------cccCCCcCCCccccccccCCcccchHHHH
Confidence            9999 9999999999999996654432211         11111       1267777775   5889999999999999


Q ss_pred             hhhhhhhccCCcccc
Q 012494          204 RLEDMAQTNGGEFTA  218 (462)
Q Consensus       204 sm~~~~~~~~~~~~~  218 (462)
                      +|..++-.+-.+++.
T Consensus       148 eMl~eaRarlaNt~g  162 (617)
T KOG0050|consen  148 EMLSEARARLANTQG  162 (617)
T ss_pred             HHHHHHHHHHhcccc
Confidence            999888766555443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.68  E-value=4.1e-17  Score=174.62  Aligned_cols=98  Identities=34%  Similarity=0.634  Sum_probs=92.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcC-Cc
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHG-NK  122 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~G-nk  122 (462)
                      .|++++|+||.+||.+|+.+|.+||.++|.+|-..+|||+..|||+||.|.|+...+.+.||-.||+.|+.++++|| ++
T Consensus       355 dPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~  434 (939)
T KOG0049|consen  355 DPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGN  434 (939)
T ss_pred             CccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccch
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999 79


Q ss_pred             hHHHhhhCCCCCHHHHHHH
Q 012494          123 WAVIARLLPGRTDNAIKNH  141 (462)
Q Consensus       123 WskIAk~LPGRT~~QcKnR  141 (462)
                      |.+||.+||+||..|...|
T Consensus       435 WakcA~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  435 WAKCAMLLPKKTSRQLRRR  453 (939)
T ss_pred             HHHHHHHccccchhHHHHH
Confidence            9999999999999665433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.61  E-value=1e-15  Score=164.13  Aligned_cols=105  Identities=30%  Similarity=0.562  Sum_probs=97.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---CCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCc-
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGA---RNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNK-  122 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~---~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~Gnk-  122 (462)
                      .....||+|||.+|+.+|.....   .+|.+|-.+|+||+..|..-||...|+|.+++++||.+||.+|+.+|.+||.+ 
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kd  382 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKD  382 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccc
Confidence            44578999999999999998853   37999999999999999999999999999999999999999999999999965 


Q ss_pred             hHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494          123 WAVIARLLPGRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus       123 WskIAk~LPGRT~~QcKnRWnslLkkkl~  151 (462)
                      |.+|-..+|||++.||+.||.+.|.++.+
T Consensus       383 w~k~R~~vPnRSdsQcR~RY~nvL~~s~K  411 (939)
T KOG0049|consen  383 WAKVRQAVPNRSDSQCRERYTNVLNRSAK  411 (939)
T ss_pred             hhhHHHhcCCccHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999977653

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.60  E-value=9.4e-16  Score=118.30  Aligned_cols=60  Identities=45%  Similarity=0.889  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHH
Q 012494           52 WSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQII  112 (462)
Q Consensus        52 WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelL  112 (462)
                      ||+|||++|+.+|.+|| .+|..||+.|+.|+..||+.||.+.|++.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 5899999999779999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.57  E-value=3.1e-15  Score=159.14  Aligned_cols=107  Identities=32%  Similarity=0.574  Sum_probs=101.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchH
Q 012494           45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWA  124 (462)
Q Consensus        45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWs  124 (462)
                      -.++.|.|+..||+.|..+|++||+++|..||..|..|+++||+.||.++++|.+++..|+.+||..|+.+..++|.+|+
T Consensus        16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ws   95 (512)
T COG5147          16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS   95 (512)
T ss_pred             ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhh
Confidence            35678899999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494          125 VIARLLPGRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus       125 kIAk~LPGRT~~QcKnRWnslLkkkl~  151 (462)
                      .||..+++||..+|.+||..++..-..
T Consensus        96 tia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          96 TIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999998866544

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.35  E-value=1.2e-12  Score=141.14  Aligned_cols=107  Identities=22%  Similarity=0.499  Sum_probs=95.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCC--CCCCCChHHHHHHHHHHH-------H
Q 012494           48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCL--KRKPFTDEEDQIIISAHA-------V  118 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~l--krgpWTeEEDelLLeLvk-------k  118 (462)
                      .+|.||+||++.|..+|.++| +.|..|++.| +|.+..|++||+++...+-  +++.||.||+++|+++|.       +
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            899999999999999999999 5899999988 8999999999999999874  899999999999999995       3


Q ss_pred             c-------------------CCchHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 012494          119 H-------------------GNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRF  156 (462)
Q Consensus       119 ~-------------------GnkWskIAk~LPGRT~~QcKnRWnslLkkkl~~~~~~  156 (462)
                      +                   +-+|..|+..+..|+..||+.+|+.++.+........
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~  517 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQE  517 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccc
Confidence            3                   1159999999999999999999999998876655544

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.35  E-value=2.8e-13  Score=101.01  Aligned_cols=47  Identities=47%  Similarity=0.967  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC-CCCcccccccccccc
Q 012494           49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIP-GRSGKSCRLRWCNQL   95 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp-gRS~kQCR~RW~n~L   95 (462)
                      |++||+|||++|+++|.+||.++|..||..|+ +||..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999877999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.28  E-value=4.9e-12  Score=94.35  Aligned_cols=46  Identities=35%  Similarity=0.698  Sum_probs=41.9

Q ss_pred             CCCCChHHHHHHHHHHHHcCCc-hHHHhhhCC-CCCHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNSTL  146 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~Gnk-WskIAk~LP-GRT~~QcKnRWnslL  146 (462)
                      +++||.|||++|++++.+||.+ |..||..|+ +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.13  E-value=5.4e-11  Score=91.76  Aligned_cols=45  Identities=36%  Similarity=0.652  Sum_probs=39.1

Q ss_pred             CChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494          104 FTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus       104 WTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk  148 (462)
                      ||+|||++|++++..||++|..||+.|+.||+.+|++||+..|+.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~   45 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP   45 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence            999999999999999999999999999669999999999996643

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.11  E-value=1.3e-10  Score=83.23  Aligned_cols=47  Identities=38%  Similarity=0.773  Sum_probs=44.2

Q ss_pred             CCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      +++||++||.+|+.++..|| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.05  E-value=1.5e-10  Score=82.90  Aligned_cols=48  Identities=48%  Similarity=1.026  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccC
Q 012494           49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      ++.||++||++|+.++.+||..+|..||..|++|+..+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            468999999999999999996789999999999999999999988764

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.04  E-value=6.7e-11  Score=116.19  Aligned_cols=93  Identities=23%  Similarity=0.340  Sum_probs=69.9

Q ss_pred             CCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhC-CCCCHHHHHHHHHHHHHhhhhhcCCC
Q 012494           79 IPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLL-PGRTDNAIKNHWNSTLRRRYTDLGRF  156 (462)
Q Consensus        79 LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~L-PGRT~~QcKnRWnslLkkkl~~~~~~  156 (462)
                      ++.|+..-|.       ++.+++++||+|||++|++++++|| ++|..||+.+ ++||..||+.||.++|+.        
T Consensus        10 ~~~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P--------   74 (249)
T PLN03212         10 VSKKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRP--------   74 (249)
T ss_pred             CCCCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhch--------
Confidence            5666666553       3568899999999999999999999 5799999988 699999999999999954        


Q ss_pred             CCCCCCCccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 012494          157 KPALGDMTEDGSLDRTKGSSEETLSVGDVNPLKPLEGRDVT  197 (462)
Q Consensus       157 k~~~~~~~ed~sldktk~SSee~ls~gdl~p~~p~~~~ei~  197 (462)
                                 .+.+..|+.+|...+..+.......|..|.
T Consensus        75 -----------~I~kgpWT~EED~lLlel~~~~GnKWs~IA  104 (249)
T PLN03212         75 -----------SVKRGGITSDEEDLILRLHRLLGNRWSLIA  104 (249)
T ss_pred             -----------hcccCCCChHHHHHHHHHHHhccccHHHHH
Confidence                       344556666665544444444445565553

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.00  E-value=8.2e-10  Score=78.16  Aligned_cols=44  Identities=41%  Similarity=0.842  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494          103 PFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus       103 pWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslL  146 (462)
                      +||.+|+.+|+.++..|| .+|..||+.|++||..+|++||+.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998763

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=98.91  E-value=4.1e-10  Score=118.01  Aligned_cols=55  Identities=18%  Similarity=0.369  Sum_probs=49.5

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC-CCCHHHHHHHHHHHHHhhhh
Q 012494           97 PCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP-GRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus        97 P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LP-GRT~~QcKnRWnslLkkkl~  151 (462)
                      ..+++++||+|||++|+++|.+|| ++|..||+.++ +|+.+|||.||+++|+..+.
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~Ik   66 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK   66 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCccc
Confidence            568899999999999999999999 57999999884 89999999999999966553

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.89  E-value=1.2e-09  Score=77.22  Aligned_cols=45  Identities=49%  Similarity=1.033  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccccc
Q 012494           51 PWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL   95 (462)
Q Consensus        51 ~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L   95 (462)
                      +||++||++|+.++.+||..+|..||+.|++|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999778999999999999999999997653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.86  E-value=3.7e-09  Score=114.54  Aligned_cols=103  Identities=26%  Similarity=0.405  Sum_probs=87.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC---------------C--------HHHHhhhCCCCCccccccccccccCCCC-CC
Q 012494           46 SRVKGPWSPEEDAVLSRLVSQFGAR---------------N--------WGMIARGIPGRSGKSCRLRWCNQLDPCL-KR  101 (462)
Q Consensus        46 ~~kKG~WT~EEDelLl~lV~kyG~~---------------n--------WskIAk~LpgRS~kQCR~RW~n~L~P~l-kr  101 (462)
                      ..+-+.|+.+||+.|.+.|..|-..               .        |+.|...||.|+.+.++.+-++..+|-- ++
T Consensus       305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccccc
Confidence            4566889999999999999988210               1        7889999999999999884434444433 99


Q ss_pred             CCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494          102 KPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR  149 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkk  149 (462)
                      |.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+.+..
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g  431 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG  431 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence            99999999999999999999999999999 999999999999988654

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.83  E-value=4.1e-10  Score=109.64  Aligned_cols=89  Identities=18%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC-CCCHHHHHHHHHHHHHhhhhhcCCCCCCCCCCccCCCCCCCCCC
Q 012494           98 CLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP-GRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTEDGSLDRTKGS  175 (462)
Q Consensus        98 ~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LP-GRT~~QcKnRWnslLkkkl~~~~~~k~~~~~~~ed~sldktk~S  175 (462)
                      .+.+|+||.|||++|+++|++|| ++|..|++.++ +|+.++||-||.++|+..++...-...+...+.+...+-..+|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs   85 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS   85 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence            34579999999999999999999 56999999999 99999999999999988776433322233333344444455677


Q ss_pred             CCccccCCCCC
Q 012494          176 SEETLSVGDVN  186 (462)
Q Consensus       176 See~ls~gdl~  186 (462)
                      ......+|.++
T Consensus        86 ~IA~~LPGRTD   96 (238)
T KOG0048|consen   86 LIAGRLPGRTD   96 (238)
T ss_pred             HHHhhCCCcCH
Confidence            66666666655

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=2.1e-07  Score=99.26  Aligned_cols=95  Identities=25%  Similarity=0.405  Sum_probs=85.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCCCCCccCCCCCCCCCCCC
Q 012494           99 LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPALGDMTEDGSLDRTKGSSE  177 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl~~~~~~k~~~~~~~ed~sldktk~SSe  177 (462)
                      ++.+.|+.-||+.|..++.+|| ++|+.|++.|+-+|+.||++||+.++                   ++.+.++.|+.+
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~l-------------------dp~i~~tews~e   65 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWL-------------------DPAIKKTEWSRE   65 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHh-------------------CHHHhhhhhhhh
Confidence            5678999999999999999999 67999999999999999999999887                   566778899999


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCcchhhhhhhccCCccc
Q 012494          178 ETLSVGDVNPLKPLEGRDVTMDDRPNRLEDMAQTNGGEFT  217 (462)
Q Consensus       178 e~ls~gdl~p~~p~~~~ei~mDd~~~sm~~~~~~~~~~~~  217 (462)
                      +...+.++.-+.|.+|++|-     ..|..++.||.++|.
T Consensus        66 ederlLhlakl~p~qwrtIa-----~i~gr~~~qc~eRy~  100 (617)
T KOG0050|consen   66 EDERLLHLAKLEPTQWRTIA-----DIMGRTSQQCLERYN  100 (617)
T ss_pred             HHHHHHHHHHhcCCccchHH-----HHhhhhHHHHHHHHH
Confidence            99999999999999999985     378889999988854

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.11  E-value=3.6e-07  Score=98.24  Aligned_cols=99  Identities=25%  Similarity=0.530  Sum_probs=86.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCC--CCCCCCCChHHHHHHHHHHHHcC---
Q 012494           46 SRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP--CLKRKPFTDEEDQIIISAHAVHG---  120 (462)
Q Consensus        46 ~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P--~lkrgpWTeEEDelLLeLvkk~G---  120 (462)
                      -..+|.||++|+..|...+..+|. .|+.|.+.+ +|-...||+||+++...  .+++++|+.||+.+|...+...-   
T Consensus       288 f~~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~  365 (512)
T COG5147         288 FEQRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEA  365 (512)
T ss_pred             HhhhccCccccccccccccccccc-hhhHhhhhh-ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHH
Confidence            346789999999999999999994 799999977 89999999999999998  67888999999999998887332   


Q ss_pred             -----CchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494          121 -----NKWAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus       121 -----nkWskIAk~LPGRT~~QcKnRWnslL  146 (462)
                           -.|..|+..+++|...+|+.++..+.
T Consensus       366 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  396 (512)
T COG5147         366 QQSSRILWLLIAQNIRNRLQHHCRDKYGVLI  396 (512)
T ss_pred             hhhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence                 25999999999999999988876654

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.52  E-value=5.6e-05  Score=79.75  Aligned_cols=53  Identities=21%  Similarity=0.470  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccC
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      +-.+-..-||.+|+-+|+++++.||.+||..||.+|..|+..+|+++|.+++.
T Consensus        67 s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   67 SFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            33456677999999999999999999999999999999999999999998654

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.43  E-value=0.00012  Score=57.55  Aligned_cols=48  Identities=10%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCH---HHHhhhCC-CC-Ccccccccccccc
Q 012494           48 VKGPWSPEEDAVLSRLVSQFGARNW---GMIARGIP-GR-SGKSCRLRWCNQL   95 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG~~nW---skIAk~Lp-gR-S~kQCR~RW~n~L   95 (462)
                      .+-.||+||..+++++|..+|.++|   +.|++.|. .| |..||+.++..|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4567999999999999999998899   99999873 45 9999999887664

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.42  E-value=0.00037  Score=54.89  Aligned_cols=47  Identities=19%  Similarity=0.322  Sum_probs=41.3

Q ss_pred             CCCCCChHHHHHHHHHHHHcCC-ch---HHHhhhCC-CC-CHHHHHHHHHHHH
Q 012494          100 KRKPFTDEEDQIIISAHAVHGN-KW---AVIARLLP-GR-TDNAIKNHWNSTL  146 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~Gn-kW---skIAk~LP-GR-T~~QcKnRWnslL  146 (462)
                      .+-.||+||..++++++..+|. +|   ..|+..|. .| |..||+.|++.+.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999996 99   99999884 35 9999999998765

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.39  E-value=0.00028  Score=74.63  Aligned_cols=48  Identities=21%  Similarity=0.437  Sum_probs=44.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494           99 LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslL  146 (462)
                      +-...||.+|+.+||+++..|| ++|..||.++..||..+|+.+|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            3456899999999999999999 99999999998899999999998876

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.28  E-value=0.00031  Score=65.83  Aligned_cols=53  Identities=26%  Similarity=0.497  Sum_probs=46.8

Q ss_pred             CCCCCChHHHHHHHHHHHHcC---C----chHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 012494          100 KRKPFTDEEDQIIISAHAVHG---N----KWAVIARLLPGRTDNAIKNHWNSTLRRRYTDL  153 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~G---n----kWskIAk~LPGRT~~QcKnRWnslLkkkl~~~  153 (462)
                      +...||.|||.+|.+.|..|-   +    -+..+++.| +||+..|.-|||+++|++|...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            467899999999999998873   2    289999999 9999999999999999998763

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.28  E-value=0.0011  Score=64.26  Aligned_cols=100  Identities=22%  Similarity=0.452  Sum_probs=74.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHhhhCC---CCCcccccccccccc-CCCC--------------------CCCCCCh
Q 012494           51 PWSPEEDAVLSRLVSQFGARNWGMIARGIP---GRSGKSCRLRWCNQL-DPCL--------------------KRKPFTD  106 (462)
Q Consensus        51 ~WT~EEDelLl~lV~kyG~~nWskIAk~Lp---gRS~kQCR~RW~n~L-~P~l--------------------krgpWTe  106 (462)
                      +|++++|-+|+.+|..-.  +-..|+..+.   .-|...+..||+..| +|.+                    .+-+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999999766  6788887652   455667788998755 2222                    3568999


Q ss_pred             HHHHHHHHHHHHcCC---chHHHhh-----hCCCCCHHHHHHHHHHHHHhhhhh
Q 012494          107 EEDQIIISAHAVHGN---KWAVIAR-----LLPGRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus       107 EEDelLLeLvkk~Gn---kWskIAk-----~LPGRT~~QcKnRWnslLkkkl~~  152 (462)
                      +|+++|.........   .|.+|-.     +-++||+.++.++|..+.+..+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~  132 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP  132 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence            999999997765543   4776644     346899999999999766555543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.94  E-value=0.00085  Score=54.93  Aligned_cols=52  Identities=29%  Similarity=0.606  Sum_probs=36.0

Q ss_pred             CCCCChHHHHHHHHHHHH------cC--C------chHHHhhhC----CCCCHHHHHHHHHHHHHhhhhhc
Q 012494          101 RKPFTDEEDQIIISAHAV------HG--N------KWAVIARLL----PGRTDNAIKNHWNSTLRRRYTDL  153 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk------~G--n------kWskIAk~L----PGRT~~QcKnRWnslLkkkl~~~  153 (462)
                      +..||.+|...||+++..      ++  +      -|..||..|    ..||+.||++||+++ ++++...
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L-~~~Yk~~   70 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL-KKKYKKI   70 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH-HHHHHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHH
Confidence            357999999999999877      21  1      399999987    369999999999884 5556544

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.63  E-value=0.0019  Score=69.04  Aligned_cols=44  Identities=18%  Similarity=0.370  Sum_probs=41.5

Q ss_pred             CCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNS  144 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWns  144 (462)
                      ..+||.+|..+|++.+..||..|.+||+++..||..||--||-+
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence            35899999999999999999999999999999999999999955

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.56  E-value=0.0014  Score=70.07  Aligned_cols=45  Identities=22%  Similarity=0.525  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccc
Q 012494           48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCN   93 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n   93 (462)
                      ....||.+|..+|++.|+.|| .+|.+||+++.+|+..||..||.+
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHc
Confidence            566899999999999999999 489999999999999999999976

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.50  E-value=0.0032  Score=68.35  Aligned_cols=45  Identities=16%  Similarity=0.357  Sum_probs=42.0

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHH
Q 012494          100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNS  144 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWns  144 (462)
                      -+..||++|..+|++++..||.+|.+||.++.+||..||--||..
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence            457899999999999999999999999999999999999999844

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.45  E-value=0.0046  Score=50.00  Aligned_cols=50  Identities=28%  Similarity=0.487  Sum_probs=32.8

Q ss_pred             CCCCChHHHHHHHHHHHHcC--------Cc-hHHHhhhCC-CCCHHHHHHHHHHHHHhhh
Q 012494          101 RKPFTDEEDQIIISAHAVHG--------NK-WAVIARLLP-GRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~G--------nk-WskIAk~LP-GRT~~QcKnRWnslLkkkl  150 (462)
                      +.+||.+||++|++.++.+.        |+ |.+++..-+ .+|..+.|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999997542        22 999999877 8999999999988886654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.44  E-value=0.0033  Score=59.63  Aligned_cols=53  Identities=25%  Similarity=0.465  Sum_probs=45.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCc-------hHHHhhhCCCCCHHHHHHHHHHHHHhhhhh
Q 012494           99 LKRKPFTDEEDQIIISAHAVHGNK-------WAVIARLLPGRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~Gnk-------WskIAk~LPGRT~~QcKnRWnslLkkkl~~  152 (462)
                      .+...||.|+|.+|.+.+..|+..       ...++..| +||..+|..|||.+++++|..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence            356789999999998888887632       77788899 999999999999999988865

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.43  E-value=0.0021  Score=69.78  Aligned_cols=47  Identities=19%  Similarity=0.563  Sum_probs=42.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccc
Q 012494           46 SRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCN   93 (462)
Q Consensus        46 ~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n   93 (462)
                      .-.++.||.+|..+|+++|+.|| .+|.+||.++.+||..||..++.+
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHh
Confidence            34567799999999999999999 489999999999999999999865

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.70  E-value=0.0071  Score=48.91  Aligned_cols=50  Identities=26%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC------CCC--HHHHhhhCC-CCCccccccccccccCCC
Q 012494           49 KGPWSPEEDAVLSRLVSQFG------ARN--WGMIARGIP-GRSGKSCRLRWCNQLDPC   98 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG------~~n--WskIAk~Lp-gRS~kQCR~RW~n~L~P~   98 (462)
                      +-+||.+||++|++.|..+.      .+|  |..+++.-+ .+|-.+-|+||...|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            45799999999999997663      123  999998876 899999999999988764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.54  E-value=0.0052  Score=50.29  Aligned_cols=45  Identities=29%  Similarity=0.615  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--CC-----CHHHHhhhC----CCCCccccccccccc
Q 012494           50 GPWSPEEDAVLSRLVSQ--F----G--AR-----NWGMIARGI----PGRSGKSCRLRWCNQ   94 (462)
Q Consensus        50 G~WT~EEDelLl~lV~k--y----G--~~-----nWskIAk~L----pgRS~kQCR~RW~n~   94 (462)
                      -.||.+|...|++++..  +    +  ..     -|..||..|    -.||+.||+.||.+.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            47999999999999987  2    1  11     299999987    369999999999874

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.47  E-value=0.079  Score=62.25  Aligned_cols=102  Identities=17%  Similarity=0.333  Sum_probs=78.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccc-------ccccc------c----------------------
Q 012494           51 PWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRL-------RWCNQ------L----------------------   95 (462)
Q Consensus        51 ~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~-------RW~n~------L----------------------   95 (462)
                      .|+.-+=..++.+..+||..+-..||..|.+++...++.       ||...      +                      
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488888889999999999888999999998888777652       21110      0                      


Q ss_pred             ---------------CCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhh------------hCCCCCHHHHHHHHHHHHH
Q 012494           96 ---------------DPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIAR------------LLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus        96 ---------------~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk------------~LPGRT~~QcKnRWnslLk  147 (462)
                                     -+..++..||+|||..|+-++.+|| ++|..|-.            +|..||+..|..|.+++++
T Consensus       906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence                           0223456799999999999999999 78999944            2358999999999999986


Q ss_pred             hhhhh
Q 012494          148 RRYTD  152 (462)
Q Consensus       148 kkl~~  152 (462)
                      -.-+.
T Consensus       986 ~~~~e  990 (1033)
T PLN03142        986 LIEKE  990 (1033)
T ss_pred             HHHHH
Confidence            65433

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.28  E-value=0.012  Score=55.50  Aligned_cols=48  Identities=23%  Similarity=0.551  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---C---CCHHHHhhhCCCCCccccccccccccC
Q 012494           48 VKGPWSPEEDAVLSRLVSQFG---A---RNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG---~---~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      +.-.||.|||.+|.+.|.+|-   .   .-...+++.| +||+..|.-||..++.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            566899999999999999993   1   1278888888 8999999999998775

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.14  E-value=0.053  Score=43.81  Aligned_cols=48  Identities=27%  Similarity=0.535  Sum_probs=39.8

Q ss_pred             CCCCChHHHHHHHHHHHHcC----C-------------chHHHhhhC-----CCCCHHHHHHHHHHHHHh
Q 012494          101 RKPFTDEEDQIIISAHAVHG----N-------------KWAVIARLL-----PGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~G----n-------------kWskIAk~L-----PGRT~~QcKnRWnslLkk  148 (462)
                      ...||.+|...|++++.+|.    +             -|..|+..|     +.||..+++.+|..+...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            45799999999999998763    1             299999976     259999999999987754

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.81  E-value=0.026  Score=45.61  Aligned_cols=47  Identities=32%  Similarity=0.436  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-----CC-----------CHHHHhhhC-----CCCCcccccccccccc
Q 012494           49 KGPWSPEEDAVLSRLVSQFG-----AR-----------NWGMIARGI-----PGRSGKSCRLRWCNQL   95 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG-----~~-----------nWskIAk~L-----pgRS~kQCR~RW~n~L   95 (462)
                      +..||.+|.+.|+++|.+|.     ..           -|..|+..|     +.|+..|++.+|.++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            56799999999999999982     11           199999876     3699999999998754

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.72  E-value=0.035  Score=57.47  Aligned_cols=46  Identities=22%  Similarity=0.465  Sum_probs=42.3

Q ss_pred             CCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslL  146 (462)
                      -..|+..|+.+|++...-.| ++|..||.++..|+...||.+|..+.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            35799999999999999999 89999999998899999999997765

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.49  E-value=0.016  Score=59.95  Aligned_cols=47  Identities=23%  Similarity=0.457  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccC
Q 012494           50 GPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      -.|+..|+.+|+++....|.+||..||.++..|+...|+.+|..++.
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            35999999999999999999999999999999999999999988665

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.26  E-value=0.034  Score=52.85  Aligned_cols=49  Identities=18%  Similarity=0.519  Sum_probs=38.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCC------HHHHhhhCCCCCccccccccccccC
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARN------WGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~n------WskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      .++..||.|||.+|.+.|.+|+...      ...++..| +|+..+|..||..++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            3567899999999999999996332      55566666 8999999999965554

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.37  E-value=0.13  Score=54.47  Aligned_cols=84  Identities=18%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             CHHHHhhhCCCCCccccccccccccCCC-------------------------CCCCCCChHHHHHHHHHHHHcCCchHH
Q 012494           71 NWGMIARGIPGRSGKSCRLRWCNQLDPC-------------------------LKRKPFTDEEDQIIISAHAVHGNKWAV  125 (462)
Q Consensus        71 nWskIAk~LpgRS~kQCR~RW~n~L~P~-------------------------lkrgpWTeEEDelLLeLvkk~GnkWsk  125 (462)
                      .|..+.=..+-|...-...||....++.                         ++...||.+|.+-|++|++.|.-+|-.
T Consensus        75 ~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~V  154 (445)
T KOG2656|consen   75 PWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFV  154 (445)
T ss_pred             CceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEE
Confidence            4766655455666666667776653321                         123569999999999999999999999


Q ss_pred             Hhhh-----CCC-CCHHHHHHHHHHHHHhhhhhcC
Q 012494          126 IARL-----LPG-RTDNAIKNHWNSTLRRRYTDLG  154 (462)
Q Consensus       126 IAk~-----LPG-RT~~QcKnRWnslLkkkl~~~~  154 (462)
                      ||..     ++. ||-.++|.||+.++++-+....
T Consensus       155 IaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  155 IADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             EeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            9987     555 9999999999999987765443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.71  E-value=0.34  Score=43.53  Aligned_cols=51  Identities=22%  Similarity=0.428  Sum_probs=40.8

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcCC----chHHHhhhC------------CCCCHHHHHHHHHHHHHh
Q 012494           98 CLKRKPFTDEEDQIIISAHAVHGN----KWAVIARLL------------PGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus        98 ~lkrgpWTeEEDelLLeLvkk~Gn----kWskIAk~L------------PGRT~~QcKnRWnslLkk  148 (462)
                      ..++..||++||.-|+-++.+||-    .|..|-..+            ..||+..|..|.+++++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            456789999999999999999995    799886632            479999999999998864

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.49  E-value=0.29  Score=51.94  Aligned_cols=48  Identities=19%  Similarity=0.362  Sum_probs=44.3

Q ss_pred             CCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494          102 KPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR  149 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkk  149 (462)
                      .+||.+|-+++.++...+|..++.|+..+|.|...|||.+|.+--|++
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~n  413 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVN  413 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhC
Confidence            489999999999999999999999999999999999999997766554

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.45  E-value=0.41  Score=49.12  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=39.8

Q ss_pred             CCCCChHHHHHHHHHHHHc----------CCchHHHhhhCC----CCCHHHHHHHHHHHHHhhhhh
Q 012494          101 RKPFTDEEDQIIISAHAVH----------GNKWAVIARLLP----GRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~----------GnkWskIAk~LP----GRT~~QcKnRWnslLkkkl~~  152 (462)
                      ...|+.+|-..||++....          +..|..||+.+.    -||+.||+++|.++.++ |+.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~-Yk~  118 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK-YKK  118 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHH
Confidence            4689999999999997643          234999999552    49999999999886654 443

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=90.95  E-value=0.6  Score=38.61  Aligned_cols=50  Identities=26%  Similarity=0.526  Sum_probs=37.4

Q ss_pred             CCChHHHHHHHHHHHHc---CC----------chHHHhhhCC-----CCCHHHHHHHHHHHHHhhhhhc
Q 012494          103 PFTDEEDQIIISAHAVH---GN----------KWAVIARLLP-----GRTDNAIKNHWNSTLRRRYTDL  153 (462)
Q Consensus       103 pWTeEEDelLLeLvkk~---Gn----------kWskIAk~LP-----GRT~~QcKnRWnslLkkkl~~~  153 (462)
                      .||.++++.|++++.+.   |+          .|..|+..|.     ..|..||++||.. ||+.+...
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~-lk~~y~~~   68 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT-LKKDYRIW   68 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH-HHHHHHHH
Confidence            49999999999998543   21          2999998772     3588999999865 56666543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=89.51  E-value=0.89  Score=46.66  Aligned_cols=47  Identities=28%  Similarity=0.435  Sum_probs=37.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh---------CCCCHHHHhhhC----CCCCcccccccccccc
Q 012494           49 KGPWSPEEDAVLSRLVSQF---------GARNWGMIARGI----PGRSGKSCRLRWCNQL   95 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~ky---------G~~nWskIAk~L----pgRS~kQCR~RW~n~L   95 (462)
                      -..|+.+|-..|+.+..+.         ....|..||+.+    -.|++.||+.+|.|..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            5789999999999998744         122499999955    3599999999998743

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=89.51  E-value=1.1  Score=48.72  Aligned_cols=51  Identities=20%  Similarity=0.232  Sum_probs=45.9

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494          100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkkl  150 (462)
                      ....||.||-.++-+++..||.++.+|-+.||.|+-..+..+|+...|.+-
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~  236 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE  236 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh
Confidence            456899999999999999999999999999999999999999988776553

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.00  E-value=0.38  Score=51.03  Aligned_cols=65  Identities=23%  Similarity=0.453  Sum_probs=51.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccccc--CCC-----C-CCCCCChHHHHHH
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL--DPC-----L-KRKPFTDEEDQII  112 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L--~P~-----l-krgpWTeEEDelL  112 (462)
                      ..--+||.+|-+++.+++..+|+ +++.|+..+|+|+.+|++.+|.+--  +|.     + .+.|+..+|-..|
T Consensus       363 ~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~  435 (507)
T COG5118         363 KGALRWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKL  435 (507)
T ss_pred             CCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhH
Confidence            34457999999999999999996 8999999999999999999998632  221     1 2457777775443

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=85.07  E-value=2.5  Score=31.57  Aligned_cols=42  Identities=21%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             hHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494          106 DEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus       106 eEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk  148 (462)
                      ++++..++.++...|-.|.+||..+ |.|...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4677888888888899999999999 99999999988776543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=84.43  E-value=1.1  Score=40.22  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=28.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHhhhC
Q 012494           46 SRVKGPWSPEEDAVLSRLVSQFGA---RNWGMIARGI   79 (462)
Q Consensus        46 ~~kKG~WT~EEDelLl~lV~kyG~---~nWskIAk~L   79 (462)
                      ...+..||.+||.-|+-++.+||.   +.|..|-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            456778999999999999999998   8899998765

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=82.15  E-value=1.5  Score=36.88  Aligned_cols=30  Identities=37%  Similarity=0.757  Sum_probs=18.4

Q ss_pred             CCCCCCCCCHHHHHHH--------HHHHHHhCCCCHHHHhh
Q 012494           45 SSRVKGPWSPEEDAVL--------SRLVSQFGARNWGMIAR   77 (462)
Q Consensus        45 ~~~kKG~WT~EEDelL--------l~lV~kyG~~nWskIAk   77 (462)
                      |....|-||+|+|+.|        .+++++||   |..|+.
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~   80 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER   80 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence            5577899999999999        55667787   566665

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	462
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		3e-32
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		8e-32
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		1e-31
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		1e-31
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		3e-29
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		4e-23
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		3e-19
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-15
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		5e-15
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-14
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		3e-10
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		8e-10
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-09
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		2e-04
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		2e-04
2d9a_A	60	Solution Structure Of Rsgi Ruh-050, A Myb Dna-Bindi		2e-04
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		4e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  136 bits (342), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 78/102 (76%)
Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           VKGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 6   VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           ED+II  AH V GN+WA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  134 bits (338), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 78/102 (76%)
Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGPW+ EED  + +LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           ED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 78/102 (76%)
Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGPW+ EED  + +LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 57  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           ED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 78/102 (76%)
Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGPW+ EED  + +LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           ED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  126 bits (317), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 74/101 (73%)
Query: 49  KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
           KGPW+ EED  +   V ++G + W  IA+ + GR GK CR RW N L+P +K+  +T+EE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           D+II  AH   GN+WA IA+LLPGRTDNA+KNHWNST+RR+
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 71/113 (62%)
Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGP++  ED ++   V + G +NW  I   +P RS K CR RW N LDP + +  +T E
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPAL 160
           ED+ I   +   G+KW+VIA+L+PGRTDNAIKN WNS++ +R +     K  L
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEIL 113

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 49  KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
           K  ++PEED +L R V+Q G+ +W MIA   P R+ + CR RW N L P +   P+T EE
Sbjct: 11  KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHW 142
           D +++     +G +WA+IA+  PGRTD  IKN W
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 62/101 (61%)
Query: 49  KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
           K  ++ EED  L +LV ++GA++W  I++ +  R+ + CR RW N ++P L+  P++ EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           D ++   +A +G KW  I++ L  R+DN I+N W    R R
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 99  LKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           +K+  +T+EED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 99  LKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           +K+  +T+EED+I+  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          +KGPW+ EED  L +LV ++G + W +IA+ + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          +KGPW+ EED  + +LV ++G + W +IA+ + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          +KGPW+ EED  +  LV ++G + W +IA+ + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          K  W+ EED  L +LV Q G  +W +IA  +P R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          K  W+ EED  L +LV Q G  +W +IA  +P R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding Domain In Mouse Cdna Length = 60

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL 95
          K  W+ EED  L  LV QFG ++W  +A   P R+ + C+ RW   L
Sbjct: 8  KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 52  WSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFT 105
           W   ED +L   V ++G   W  IA  +  +S K C+ RW   LDP +K+  ++
Sbjct: 12  WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	462
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-70
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	9e-70
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-69
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	8e-11
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	5e-66
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-65
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-65
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-40
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	7e-07
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-32
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-09
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	4e-28
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	7e-07
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-27
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	3e-26
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	6e-10
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	6e-12
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	5e-04
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-12
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-12
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	9e-07
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-11
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	7e-11
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-10
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	4e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-09
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	6e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-08
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-07
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	6e-08
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	6e-07
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	4e-05
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	3e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	4e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	5e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	4e-04
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-05
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	1e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	1e-04
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	2e-04
2cjj_A	93	Radialis; plant development, DNA-binding protein,	3e-04
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	5e-04
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	7e-04

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  217 bits (556), Expect = 3e-70
 Identities = 56/102 (54%), Positives = 74/102 (72%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
            KGPW+ EED  +   V ++G + W  IA+ + GR GK CR RW N L+P +K+  +T+E
Sbjct: 26  NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 85

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           ED+II  AH   GN+WA IA+LLPGRTDNA+KNHWNST+RR+
Sbjct: 86  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  215 bits (551), Expect = 9e-70
 Identities = 58/103 (56%), Positives = 78/103 (75%)

Query: 47  RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTD 106
            +KGPW+ EED  + +LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T+
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61

Query: 107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           EED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  215 bits (550), Expect = 3e-69
 Identities = 50/113 (44%), Positives = 71/113 (62%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
           +KGP++  ED ++   V + G +NW  I   +P RS K CR RW N LDP + +  +T E
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPAL 160
           ED+ I   +   G+KW+VIA+L+PGRTDNAIKN WNS++ +R +     K  L
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEIL 113

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 49  KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
           K  W+PEED  + R   + G++ W +IA+ IPGR+  + + RW N     + ++  T+  
Sbjct: 54  KHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRW-NS---SISKRISTNSN 108

Query: 109 DQIIISAHAVHGNKWAVIARLL 130
            + I+        K A + + L
Sbjct: 109 HKEILLPDRSKKRKAADVPKKL 130

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  206 bits (526), Expect = 5e-66
 Identities = 37/101 (36%), Positives = 62/101 (61%)

Query: 49  KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
           K  ++ EED  L +LV ++GA++W  I++ +  R+ + CR RW N ++P L+  P++ EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           D ++   +A +G KW  I++ L  R+DN I+N W    R R
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  205 bits (523), Expect = 2e-65
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 43  SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRK 102
           +  +  K  ++PEED +L R V+Q G  +W MIA   P R+ + CR RW N L P +   
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHT 63

Query: 103 PFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYT 151
           P+T EED +++     +G +WA+IA+  PGRTD  IKN W +   +   
Sbjct: 64  PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGI 112

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  206 bits (526), Expect = 3e-65
 Identities = 58/104 (55%), Positives = 78/104 (75%)

Query: 46  SRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFT 105
             +KGPW+ EED  + +LV ++G + W +IA+ + GR GK CR RW N L+P +K+  +T
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114

Query: 106 DEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
           +EED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  140 bits (356), Expect = 3e-40
 Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 1/101 (0%)

Query: 48  VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
            K  W+ EED  L +LV Q G  +W +IA  +P R+   C+ RW   L+P L + P+T E
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64

Query: 108 EDQIIISAHAVHGNK-WAVIARLLPGRTDNAIKNHWNSTLR 147
           EDQ +I     +G K W+VIA+ L GR     +  W++ L 
Sbjct: 65  EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 99  LKRKPFTDEEDQIIISAHAVHGNK-WAVIARLLPGRTDNAIKNHWNSTLR 147
           L +  +T EED+ +      +G   W VIA  LP RTD   ++ W   L 
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 53

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  116 bits (293), Expect = 3e-32
 Identities = 23/68 (33%), Positives = 33/68 (48%)

Query: 41  GGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLK 100
           G S SS   G W   ED +L   V ++G   W  IA  +  +S K C+ RW   LDP +K
Sbjct: 1   GSSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60

Query: 101 RKPFTDEE 108
           +  ++   
Sbjct: 61  KTEWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 97  PCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLR 147
              K   + + ED+I+ +A   +G N+W+ IA LL  ++    K  W   L 
Sbjct: 5   SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  104 bits (262), Expect = 4e-28
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          +KGPW+ EED  L +LV ++G + W +IA+ + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 99  LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRT 134
           L + P+T EEDQ +I     +G  +W+VIA+ L GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score =  101 bits (254), Expect = 6e-27
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 42 GSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          GSS S  K  W+ EED  L  LV QFG ++W  +A   P R+ + C+ RW   L  
Sbjct: 1  GSSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 99.6 bits (249), Expect = 3e-26
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
           K  W+ EED  L +LV Q G  +W +IA  +P R+   C+ RW   L+P
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 53.7 bits (130), Expect = 6e-10
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 99  LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLR 147
           L +  +T EED+ +      +G + W VIA  LP RTD   ++ W   L 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 42 GSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLD 96
          GSS S     W+ +E+  L   V   G  NW  +A  +  ++ + C   +     
Sbjct: 1  GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 100 KRKPFTDEEDQIIISAHAVHGNK-WAVIARLLPGRTDNAIKNHWNSTL 146
               +T +E+  ++ A    G   W  +A  +  +T    + H+    
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 59.8 bits (145), Expect = 7e-12
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 41  GGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLK 100
           G S SS  K  WS EE+  L  L        W  IA  I GR+   C   +   LD   +
Sbjct: 1   GSSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQ 58

Query: 101 RK 102
           R 
Sbjct: 59  RD 60

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 99  LKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTL 146
            K+  ++ EE++ ++    +   +W  IA ++ GRT      H+   L
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLL 53

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 59.2 bits (144), Expect = 7e-12
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCN 93
          +  W  EED  L   V ++G  NW  I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 100 KRKPFTDEEDQIIISAHAVHGN-KWAVIARLLP--GRTDNAIKNHWNSTLRRR 149
           KR+ +  EED+ + S    +G   W+ I        RT   +K+ W +  + +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 23/178 (12%)

Query: 42  GSSSSRVKGPWSPEEDAVLSRLVSQ-----FGARNWGMIARGIPGRSGKSCRLRWCNQLD 96
           G+  S  K  ++ EED  +  +V +          +  I+  +P  +G S R R+   L 
Sbjct: 1   GALPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLS 60

Query: 97  PCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNS---------TLR 147
             L+     D+  +++       GN               +IK  +++           +
Sbjct: 61  KRLEYVYEVDKFGKLV---RDDDGNLIKT------KVLPPSIKRKFSADEDYTLAIAVKK 111

Query: 148 RRYTDLGRFKPALGDMTEDGSLDRTKGSSEETLSVGDVNPLKPLEGRDVTMDDRPNRL 205
           + Y DL +  P  G          T  +        +  P             R   +
Sbjct: 112 QFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPI 169

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 57.1 bits (138), Expect = 7e-11
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCN 93
            +R +  W  EED  L   V ++G  NW  I        R+    + RW  
Sbjct: 5  HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 100 KRKPFTDEEDQIIISAHAVHGN-KWAVIARLLP--GRTDNAIKNHWNSTLRRRYTD 152
           KR+ +  EED+ + S    +G   W+ I        RT   +K+ W +  + +   
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCN 93
          +++   K  W+ EE   +   V ++G  NW  I++  P   R+    + RW  
Sbjct: 5  TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 100 KRKPFTDEEDQIIISAHAVHGN-KWAVIARLLP--GRTDNAIKNHWNSTLRR 148
           K++ +T EE + + +    +G   WA I++  P   RT   IK+ W  T++R
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKR 60

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCN 93
          K  W+ EE   +   V ++G  NW  I++  P   R+    + RW  
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 100 KRKPFTDEEDQIIISAHAVHGN-KWAVIARLLP--GRTDNAIKNHWNSTLRR 148
           K++ +T EE + + +    +G   WA I++  P   RT   IK+ W  T++R
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKR 51

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 93  NQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148
           +     L  + +T+EE          HG  W+ IAR++  +T +  KN + +  +R
Sbjct: 8   SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKR 63

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 46.9 bits (111), Expect = 4e-07
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCN 93
             +     W+ EE     + + + G RNW  IAR +  ++   C+  + N
Sbjct: 10 GRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFN 59

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 32 GGDGGGGGGGGSSSSRVKGPWSPEEDAVLSRLVSQFGA---RNWGMIARGIPGRSGKSCR 88
          G  G  G      +   + PW+  +  +L   + Q+       W  IAR +P +S + C 
Sbjct: 1  GSSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCI 60

Query: 89 LRW 91
           R+
Sbjct: 61 ARY 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPC 98
           G ++PEE   L  L  + G  +W  I   + GRS  S + R     D C
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRLMKDTC 70

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 104 FTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHW 142
           +T EE + +      HGN WA I   L GR+ +++K+  
Sbjct: 26  YTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC 63

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 41 GGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCR 88
          G S SS     W+ EE  +  + +++FG R W  I++ I  R+    +
Sbjct: 1  GSSGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVK 47

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHW 142
               +T EE ++     A  G +W  I++L+  RT   +K++ 
Sbjct: 8   YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA 50

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 10/98 (10%)

Query: 37  GGGGGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIAR----GIPGRSGKSCRLRWC 92
           G         R++ P+S  E   L + V + G   W  +          R+    + +W 
Sbjct: 1   GSHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWK 60

Query: 93  NQLDPCL------KRKPFTDEEDQIIISAHAVHGNKWA 124
             +          + +P   E    +++AH     +  
Sbjct: 61  TLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQM 98

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 41 GGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGI-PGRSGKSCRLRWCN 93
          G S SS     W  +E+ +L       G  NW  IA  +   R+ + CR  +  
Sbjct: 1  GSSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 43  SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIAR----GIPGRSGKSCRLRWCNQLDPC 98
               R++ P++  E  +L   V   G   W  +       +  R+    + +W   +   
Sbjct: 25  FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84

Query: 99  L------KRKPFTDEEDQIIISAHAVHGNKWA 124
                  +  P   E    +++A A      +
Sbjct: 85  SIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 43.3 bits (102), Expect = 5e-06
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 32 GGDGGGGGGGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRW 91
          G  G  G    S  +     W+ +E  +L   +  +   +W  ++  +  R+   C L +
Sbjct: 1  GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHF 59

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 81  GRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKN 140
           G SG S  L    +       + +T++E  +++ A  ++ + W  ++  +  RT +    
Sbjct: 1   GSSGSSGTLA---KSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECIL 57

Query: 141 HWNS 144
           H+  
Sbjct: 58  HFLR 61

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 42  GSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIAR----GIPGRSGKSCRLRWCN---- 93
             S  R++ P+S  E   L   V   G   W  +          R+    + +W      
Sbjct: 10  ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69

Query: 94  -QLDPCLKRK-PFTDEEDQIIISAHAVHGNKWA 124
             + P  +R  P   +    +++AHA    +  
Sbjct: 70  ASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 42 GSSSSRVKGPWSPEEDAVLSRLVSQFGA-----RNWGMIARGIPGRSGKSCRLR 90
          GSS S     W+ EE   L +L+ ++       R W  IA  +  R+ K    +
Sbjct: 1  GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQ 54

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 51  PWSPEEDAVLSRLVSQFGARNWGMIAR----GIPGRSGKSCRLRWCN-----QLDPCLKR 101
           P+S  E   L   V   G   W  +          R+    + +W        + P  +R
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 102 K-PFTDEEDQIIISAHAVHGNK 122
             P   +    +++AHA    +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 38 GGGGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSC 87
          G  G S   +    W+  E  +      Q   +N+G+IA  +  +S   C
Sbjct: 1  GSSGSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDC 49

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARN---WGMIARGIPGRSGKSCRLRW 91
          +S+     PWS +E+    R ++ +       W  +AR + GR+ +  +  +
Sbjct: 2  ASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 51 PWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSC 87
           WS +E         Q   +N+G+IA  +  ++   C
Sbjct: 45 MWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAEC 80

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 11/76 (14%)

Query: 85  KSCRLRWCNQL--DPCLKRK------PFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDN 136
           +  +    N L  DP    K       ++++E +        H   + +IA  L  +T  
Sbjct: 19  QRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVA 78

Query: 137 AIKNH---WNSTLRRR 149
               +          +
Sbjct: 79  ECVLYYYLTKKNENYK 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	462
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.98
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.94
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.79
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.72
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.68
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.68
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.65
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.65
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.64
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.63
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.62
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.6
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.59
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.58
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.58
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.54
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.52
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.5
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.5
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.5
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.5
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.49
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.48
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.47
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.45
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.44
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.43
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.42
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.41
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.09
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.36
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.35
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.31
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.31
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.29
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.25
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.25
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.24
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.87
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.22
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.16
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.13
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.12
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.12
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.11
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.11
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.09
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.04
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.95
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.86
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.86
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.83
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.77
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.76
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.7
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.61
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.53
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.38
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.32
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.28
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.27
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.27
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.16
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.98
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.81
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.81
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.75
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.71
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.87
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.59
2crg_A	70	Metastasis associated protein MTA3; transcription	97.47
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.45
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.44
2crg_A	70	Metastasis associated protein MTA3; transcription	97.31
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.2
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.16
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.11
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.11
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.0
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.6
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.21
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.09
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.29
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.57
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.0
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.88
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	90.3
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.12

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.98  E-value=9.4e-33  Score=233.79  Aligned_cols=104  Identities=56%  Similarity=1.073  Sum_probs=99.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHH
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVI  126 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskI  126 (462)
                      .++|+||+|||++|+++|.+||.++|..||+.|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|+.|
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   81 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI   81 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence            67999999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHHHhhh
Q 012494          127 ARLLPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus       127 Ak~LPGRT~~QcKnRWnslLkkkl  150 (462)
                      |+.|||||+++|++||+.++++++
T Consensus        82 a~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           82 AKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHcCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999998763

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=2.6e-32  Score=232.96  Aligned_cols=103  Identities=36%  Similarity=0.684  Sum_probs=99.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhh
Q 012494           49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIAR  128 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk  128 (462)
                      ||+||+|||++|+++|.+||.++|..||..|++|+++||++||.++|+|.+++++||+|||.+|++++.+||++|+.||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhhh
Q 012494          129 LLPGRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus       129 ~LPGRT~~QcKnRWnslLkkkl~  151 (462)
                      .|||||+++|++||+.++++...
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHH
Confidence            99999999999999999887543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=4.6e-32  Score=238.88  Aligned_cols=107  Identities=45%  Similarity=0.848  Sum_probs=102.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHh
Q 012494           48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIA  127 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIA  127 (462)
                      .||+||+|||++|+++|.+||.++|..||..|++|+++||++||.++|+|.+++++||.|||++|+++|.+||++|+.||
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            48999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhhhhcC
Q 012494          128 RLLPGRTDNAIKNHWNSTLRRRYTDLG  154 (462)
Q Consensus       128 k~LPGRT~~QcKnRWnslLkkkl~~~~  154 (462)
                      ++|||||+++|++||+++|++++....
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~  107 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNS  107 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999988875443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=9.2e-32  Score=235.61  Aligned_cols=107  Identities=52%  Similarity=0.988  Sum_probs=102.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCch
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKW  123 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkW  123 (462)
                      .+..++|+||+|||++|+++|.+||.++|..||+.|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|
T Consensus        22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W  101 (128)
T 1h8a_C           22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW  101 (128)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            46788999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494          124 AVIARLLPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus       124 skIAk~LPGRT~~QcKnRWnslLkkkl  150 (462)
                      +.||+.|||||+++|++||+.++++++
T Consensus       102 ~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C          102 AEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999998753

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=1.6e-31  Score=234.25  Aligned_cols=105  Identities=40%  Similarity=0.789  Sum_probs=100.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCch
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKW  123 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkW  123 (462)
                      .+..+||+||+|||++|+++|.+||. +|..||+.|++|+++||++||.++|+|.+++++||.|||++|++++.+||++|
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            46789999999999999999999997 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494          124 AVIARLLPGRTDNAIKNHWNSTLRRR  149 (462)
Q Consensus       124 skIAk~LPGRT~~QcKnRWnslLkkk  149 (462)
                      +.||+.|||||+++|++||+.++++.
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999988764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=9.4e-30  Score=230.05  Aligned_cols=107  Identities=54%  Similarity=1.047  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCch
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKW  123 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkW  123 (462)
                      .+..++|+||+|||++|+++|.+||.++|..||+.|++|++.||+.||.++|+|.+++++||+|||.+|++++.+||++|
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W  132 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW  132 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCH
Confidence            45678999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494          124 AVIARLLPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus       124 skIAk~LPGRT~~QcKnRWnslLkkkl  150 (462)
                      +.||+.|||||+++|++||+.++++++
T Consensus       133 ~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          133 AEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999998753

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.94  E-value=1.9e-28  Score=221.56  Aligned_cols=101  Identities=38%  Similarity=0.716  Sum_probs=59.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCC-chHH
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGN-KWAV  125 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~Gn-kWsk  125 (462)
                      ..+++||+|||++|+++|.+||.++|..||+.|++|+++||++||.++|+|.+++++||+|||++|++++.+||. +|..
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~   83 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV   83 (159)
T ss_dssp             ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence            678999999999999999999988999999999999999999999999999999999999999999999999996 6999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHHH
Q 012494          126 IARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       126 IAk~LPGRT~~QcKnRWnslLk  147 (462)
                      ||..|||||+.||++||+++|.
T Consensus        84 Ia~~l~~Rt~~qcr~Rw~~~l~  105 (159)
T 1h89_C           84 IAKHLKGRIGKQCRERWHNHLN  105 (159)
T ss_dssp             HHHTSTTCCHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCHHHHHHHHHHHhC
Confidence            9999999999999999998874

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=2.8e-21  Score=153.62  Aligned_cols=67  Identities=33%  Similarity=0.669  Sum_probs=64.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHH
Q 012494           43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEED  109 (462)
Q Consensus        43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEED  109 (462)
                      .++..++|+||+|||++|+++|.+||.++|..||+.|++|+++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4567899999999999999999999988999999999999999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.79  E-value=6.6e-20  Score=160.37  Aligned_cols=73  Identities=33%  Similarity=0.659  Sum_probs=49.8

Q ss_pred             HhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494           75 IARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus        75 IAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      ||+.|++|+++||+.||.++|+|.+++++||+|||++|++++.+||. +|..||..|||||+.||++||+++|.
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~   74 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN   74 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence            78999999999999999999999999999999999999999999995 69999999999999999999998773

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.72  E-value=6.8e-18  Score=163.22  Aligned_cols=106  Identities=23%  Similarity=0.318  Sum_probs=92.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----HHHHhhhCCCCCccccccccccccCCCCC------------------
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARN-----WGMIARGIPGRSGKSCRLRWCNQLDPCLK------------------  100 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~n-----WskIAk~LpgRS~kQCR~RW~n~L~P~lk------------------  100 (462)
                      .+...|++||+|||++|+++|.+||.++     |..||+.|+|||+.|||.||.++|.+.+.                  
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            4567899999999999999999998543     99999999999999999999999999986                  


Q ss_pred             -----------CCCCChHHHHHHHHHHHH-c--------------------------------C----------------
Q 012494          101 -----------RKPFTDEEDQIIISAHAV-H--------------------------------G----------------  120 (462)
Q Consensus       101 -----------rgpWTeEEDelLLeLvkk-~--------------------------------G----------------  120 (462)
                                 +..||.+||-.|+..+++ +                                +                
T Consensus        83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  162 (246)
T 1ign_A           83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT  162 (246)
T ss_dssp             BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred             ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence                       789999999999998876 1                                1                


Q ss_pred             ---------CchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494          121 ---------NKWAVIARLLPGRTDNAIKNHWNSTLRRR  149 (462)
Q Consensus       121 ---------nkWskIAk~LPGRT~~QcKnRWnslLkkk  149 (462)
                               ..|..||+.+|+||.+++|+||+.+|+..
T Consensus       163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                     16999999999999999999999988765

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=2.2e-17  Score=127.28  Aligned_cols=58  Identities=38%  Similarity=0.692  Sum_probs=55.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCC
Q 012494           43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLK  100 (462)
Q Consensus        43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lk  100 (462)
                      .++..++++||+|||++|+++|.+||.++|..||+.|++||..||++||.++|+|.++
T Consensus         2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            4678999999999999999999999988999999999999999999999999999875

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.68  E-value=1.4e-17  Score=146.78  Aligned_cols=85  Identities=20%  Similarity=0.336  Sum_probs=79.4

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC----CCCCccccccccccccC-----CCCCCC-CCChHHHH
Q 012494           41 GGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGI----PGRSGKSCRLRWCNQLD-----PCLKRK-PFTDEEDQ  110 (462)
Q Consensus        41 ~~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~L----pgRS~kQCR~RW~n~L~-----P~lkrg-pWTeEEDe  110 (462)
                      +...+.+++++||+|||++|+++|.+||.++|..|++.+    ++||..+|++||+++|+     |.++++ +|+++|+.
T Consensus         9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~   88 (121)
T 2juh_A            9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD   88 (121)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence            345678999999999999999999999988999999984    89999999999999998     999998 99999999


Q ss_pred             HHHHHHHHcCCchHH
Q 012494          111 IIISAHAVHGNKWAV  125 (462)
Q Consensus       111 lLLeLvkk~GnkWsk  125 (462)
                      +|+.++..+||+|++
T Consensus        89 rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           89 RVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHccchhc
Confidence            999999999999986

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.65  E-value=1.1e-16  Score=141.26  Aligned_cols=80  Identities=18%  Similarity=0.291  Sum_probs=74.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC----CCCCcccccccccccc-----CCCCCCCCCChHH-HHHH
Q 012494           43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGI----PGRSGKSCRLRWCNQL-----DPCLKRKPFTDEE-DQII  112 (462)
Q Consensus        43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~L----pgRS~kQCR~RW~n~L-----~P~lkrgpWTeEE-DelL  112 (462)
                      ....+++++||+|||+.|+++|++||.++|..|++.+    ++||+.||++||+|++     +|.++++.|+++| +.+|
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            4667899999999999999999999998999999863    8999999999999999     8999999999999 8999


Q ss_pred             HHHHHHcCCc
Q 012494          113 ISAHAVHGNK  122 (462)
Q Consensus       113 LeLvkk~Gnk  122 (462)
                      ++++..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999975

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.65  E-value=5.8e-17  Score=131.34  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=46.8

Q ss_pred             cccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 012494           87 CRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNST  145 (462)
Q Consensus        87 CR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnsl  145 (462)
                      ..-||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||++|||+||+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999 99999999999864

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.64  E-value=1.1e-16  Score=120.22  Aligned_cols=52  Identities=48%  Similarity=1.053  Sum_probs=49.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCC
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPC   98 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~   98 (462)
                      ++||+||+|||++|+++|.+||.++|..||+.|++||++||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999878999999999999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.63  E-value=1.7e-16  Score=125.75  Aligned_cols=63  Identities=24%  Similarity=0.322  Sum_probs=58.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC--CCCccccccccccccCCCCCCCCCC
Q 012494           43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCNQLDPCLKRKPFT  105 (462)
Q Consensus        43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp--gRS~kQCR~RW~n~L~P~lkrgpWT  105 (462)
                      ..+.+++++||+|||++|+++|.+||.++|..||+.|+  +||+.||++||.++|+|.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45678999999999999999999999889999999999  9999999999999999999988764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.62  E-value=1.8e-16  Score=118.87  Aligned_cols=52  Identities=38%  Similarity=0.734  Sum_probs=48.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCC
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPC   98 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~   98 (462)
                      +++++||+|||++|+++|.+||.++|..||+.|++||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            3689999999999999999999879999999999999999999999999984

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1e-15  Score=120.23  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=55.7

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 012494           94 QLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDL  153 (462)
Q Consensus        94 ~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkkl~~~  153 (462)
                      +|+|.+++++||.|||++|++++++||++|.+||+ |+|||++||++||+.+|++.+...
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            79999999999999999999999999999999999 889999999999999998877643

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.59  E-value=2.4e-15  Score=120.24  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=55.1

Q ss_pred             cCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhhhhh
Q 012494           95 LDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus        95 L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkkl~~  152 (462)
                      ++|.+++++||+|||++|++++.+||++|..||++|||||++||++||+.+|+++...
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999887655

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.58  E-value=7e-16  Score=119.43  Aligned_cols=56  Identities=21%  Similarity=0.387  Sum_probs=52.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCC
Q 012494           43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPC   98 (462)
Q Consensus        43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~   98 (462)
                      .++.+.+++||+|||++|+++|.+||.++|..||+.|++||++||+.||.++|.+.
T Consensus         2 ss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            2 SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            45678999999999999999999999889999999999999999999999999865

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.58  E-value=5.4e-16  Score=122.29  Aligned_cols=57  Identities=23%  Similarity=0.467  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC--CCCccccccccccccCCCCC
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCNQLDPCLK  100 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp--gRS~kQCR~RW~n~L~P~lk  100 (462)
                      ....+|++||+|||++|+++|.+||.++|..||+.++  +||+.||++||+|+++|.++
T Consensus         6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            3446789999999999999999999889999999865  99999999999999998764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.54  E-value=4e-15  Score=114.63  Aligned_cols=54  Identities=24%  Similarity=0.434  Sum_probs=50.5

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494           96 DPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRR  149 (462)
Q Consensus        96 ~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkk  149 (462)
                      +|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|+..
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence            5788999999999999999999999 69999999999999999999999988654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.4e-14  Score=113.54  Aligned_cols=55  Identities=27%  Similarity=0.415  Sum_probs=50.8

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494           96 DPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus        96 ~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl  150 (462)
                      .|.+++++||.|||++|+++|.+|| ++|..||..|+|||+.||++||+++|+..+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i   59 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSI   59 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcc
Confidence            4678999999999999999999999 899999999999999999999999885543

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=5e-15  Score=111.76  Aligned_cols=49  Identities=27%  Similarity=0.422  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC--CCCccccccccccccC
Q 012494           48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCNQLD   96 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp--gRS~kQCR~RW~n~L~   96 (462)
                      ++|+||+|||++|+++|.+||.++|..||..|+  +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            579999999999999999999889999999999  9999999999999875

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.52  E-value=1.6e-14  Score=108.22  Aligned_cols=49  Identities=35%  Similarity=0.639  Sum_probs=45.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494           99 LKRKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      +++++||.|||++|++++.+||. +|..||+.|+|||+.||++||+++|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999997 99999999999999999999999985

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=4.1e-15  Score=119.30  Aligned_cols=61  Identities=25%  Similarity=0.309  Sum_probs=55.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCHHHHhhhCCCCCccccccccccccCCCCCCCC
Q 012494           43 SSSSRVKGPWSPEEDAVLSRLVSQFGA-----RNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKP  103 (462)
Q Consensus        43 ~~~~~kKG~WT~EEDelLl~lV~kyG~-----~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgp  103 (462)
                      +++...+++||+|||++|+++|.+||.     ++|..||++|++||..||+.||+++|.+.++.+.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            467889999999999999999999996     6899999999999999999999999998777654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.50  E-value=9.5e-15  Score=112.59  Aligned_cols=51  Identities=25%  Similarity=0.500  Sum_probs=47.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC-CCCcccccccccccc
Q 012494           45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP-GRSGKSCRLRWCNQL   95 (462)
Q Consensus        45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp-gRS~kQCR~RW~n~L   95 (462)
                      ....+++||+|||++|+++|.+||.++|..||+.|+ +||++||+.||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346789999999999999999999889999999999 999999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.50  E-value=3.4e-14  Score=112.55  Aligned_cols=59  Identities=22%  Similarity=0.348  Sum_probs=53.8

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC--CCCHHHHHHHHHHHHHhhhhh
Q 012494           94 QLDPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP--GRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus        94 ~L~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LP--GRT~~QcKnRWnslLkkkl~~  152 (462)
                      ..++..++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||+++|+..+.+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            456677899999999999999999999 79999999999  999999999999999886644

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.50  E-value=2.8e-14  Score=107.66  Aligned_cols=50  Identities=26%  Similarity=0.428  Sum_probs=46.5

Q ss_pred             CCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC--CCCHHHHHHHHHHHHHhh
Q 012494          100 KRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP--GRTDNAIKNHWNSTLRRR  149 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~G-nkWskIAk~LP--GRT~~QcKnRWnslLkkk  149 (462)
                      ++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||+++++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            478999999999999999999 79999999999  999999999999998753

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.49  E-value=2.8e-14  Score=106.96  Aligned_cols=49  Identities=37%  Similarity=0.694  Sum_probs=46.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494           99 LKRKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      +++++||+|||++|++++.+||. +|..||+.|+|||+.||++||+++|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999997 69999999999999999999999884

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.48  E-value=3.8e-14  Score=109.69  Aligned_cols=52  Identities=15%  Similarity=0.295  Sum_probs=48.9

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494           96 DPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus        96 ~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      .+.+.+++||+|||++|++++.+|| ++|.+||+.|+|||+.||++||+++|.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            3568899999999999999999999 899999999999999999999999884

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4.1e-15  Score=116.72  Aligned_cols=57  Identities=33%  Similarity=0.492  Sum_probs=52.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCC
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRK  102 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrg  102 (462)
                      +|..++++||+|||++|+++|..||. +|..||+ +++||++||++||.++|+|.++++
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            46789999999999999999999996 8999999 889999999999999999876654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.45  E-value=2.1e-14  Score=114.72  Aligned_cols=59  Identities=22%  Similarity=0.304  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCC
Q 012494           42 GSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKR  101 (462)
Q Consensus        42 ~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkr  101 (462)
                      ..++..++++||+|||++|+++|.+||. +|..||++|++||..||+.||.++|.+.++.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            3467899999999999999999999996 8999999999999999999999999876655

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=8.2e-14  Score=111.73  Aligned_cols=56  Identities=16%  Similarity=0.152  Sum_probs=51.8

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcC------CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494           96 DPCLKRKPFTDEEDQIIISAHAVHG------NKWAVIARLLPGRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus        96 ~P~lkrgpWTeEEDelLLeLvkk~G------nkWskIAk~LPGRT~~QcKnRWnslLkkkl~  151 (462)
                      +|.+.+++||.|||++|++++.+||      ++|..||.+|+|||+.||++||+++|++...
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999      7899999999999999999999999977543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.43  E-value=7e-14  Score=120.47  Aligned_cols=83  Identities=18%  Similarity=0.259  Sum_probs=68.1

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC----CCCCcccccccccccc-----CCCCCCCCCChHHH
Q 012494           39 GGGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGI----PGRSGKSCRLRWCNQL-----DPCLKRKPFTDEED  109 (462)
Q Consensus        39 ~s~~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~L----pgRS~kQCR~RW~n~L-----~P~lkrgpWTeEED  109 (462)
                      +.......+++++||+|||++|+++|.+||.++|..|++.+    ++||..+|++||++++     +|.++++.-+++|-
T Consensus         3 ~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~   82 (105)
T 2aje_A            3 HMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQEL   82 (105)
T ss_dssp             ------CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHH
T ss_pred             CCccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHH
Confidence            44555778999999999999999999999998999999965    8999999999999988     68898888777776


Q ss_pred             HH-HHHHHHHcCC
Q 012494          110 QI-IISAHAVHGN  121 (462)
Q Consensus       110 el-LLeLvkk~Gn  121 (462)
                      .. +++|+..+++
T Consensus        83 l~rv~~~~~~~~~   95 (105)
T 2aje_A           83 LNRVLNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            55 8888876553

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.42  E-value=2.1e-13  Score=107.40  Aligned_cols=51  Identities=29%  Similarity=0.517  Sum_probs=46.4

Q ss_pred             CCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC--CCCHHHHHHHHHHHHHhh
Q 012494           99 LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP--GRTDNAIKNHWNSTLRRR  149 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LP--GRT~~QcKnRWnslLkkk  149 (462)
                      .++++||+|||++|+++|.+|| ++|..||+.++  |||+.||++||+++++..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4688999999999999999999 68999999866  999999999999998764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.41  E-value=2.9e-13  Score=104.26  Aligned_cols=50  Identities=24%  Similarity=0.415  Sum_probs=46.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC-CCCHHHHHHHHHHHH
Q 012494           97 PCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP-GRTDNAIKNHWNSTL  146 (462)
Q Consensus        97 P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LP-GRT~~QcKnRWnslL  146 (462)
                      ..+.+++||+|||++|++++.+|| ++|..||++|+ +||+.||++||++++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346688999999999999999999 89999999999 999999999998875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.09  E-value=3e-14  Score=118.70  Aligned_cols=58  Identities=24%  Similarity=0.315  Sum_probs=53.9

Q ss_pred             cccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494           93 NQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus        93 n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkkl  150 (462)
                      ..++|.+++++||.|||++|++++.+||++|..||..|+|||++||++||+.+|++.-
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            3567889999999999999999999999999999999999999999999999997743

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.36  E-value=5.1e-13  Score=109.41  Aligned_cols=53  Identities=15%  Similarity=0.431  Sum_probs=48.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccc
Q 012494           41 GGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQ   94 (462)
Q Consensus        41 ~~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~   94 (462)
                      ........+++||+|||++|+++|.+|| ++|..||++|++||..||+.||.++
T Consensus        10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            3345667789999999999999999999 7999999999999999999999988

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.35  E-value=7e-13  Score=109.76  Aligned_cols=69  Identities=22%  Similarity=0.382  Sum_probs=60.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHhhh----CCCCCcccccccccccc-----CCCCCC-CCCChHHHHHHHHHHHH
Q 012494           50 GPWSPEEDAVLSRLVSQFGARNWGMIARG----IPGRSGKSCRLRWCNQL-----DPCLKR-KPFTDEEDQIIISAHAV  118 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~~nWskIAk~----LpgRS~kQCR~RW~n~L-----~P~lkr-gpWTeEEDelLLeLvkk  118 (462)
                      ++||+|||++|+++|++||.++|..|++.    |++||+.+|++||+|+|     +|.+++ .+...+...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999995    89999999999999988     676555 47778888899988864

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.31  E-value=6.6e-13  Score=116.69  Aligned_cols=82  Identities=27%  Similarity=0.501  Sum_probs=60.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCch
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKW  123 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkW  123 (462)
                      .+..++|+||+|||++|+.+|.+|| .+|..||+.|+|||..||+.||.++|++.+..++|+.+-    +........+|
T Consensus        49 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~  123 (131)
T 3zqc_A           49 DPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKA  123 (131)
T ss_dssp             STTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-----
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhh
Confidence            3567899999999999999999999 479999999999999999999999999999999988763    11112234568


Q ss_pred             HHHhhhC
Q 012494          124 AVIARLL  130 (462)
Q Consensus       124 skIAk~L  130 (462)
                      +.|++.|
T Consensus       124 ~~i~k~~  130 (131)
T 3zqc_A          124 ADVPKKL  130 (131)
T ss_dssp             -------
T ss_pred             hhcchhc
Confidence            8888766

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.31  E-value=1.1e-12  Score=106.20  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCC
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLK  100 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lk  100 (462)
                      .|..++|+||+|||++|+++|.+||. +|..||+.| |||+.||+.||. .|....+
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~-~L~~~~~   71 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCR-LMKDTCN   71 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHH-HCSCCCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHH-HHHHHcc
Confidence            57899999999999999999999996 599999999 999999999997 4554443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.29  E-value=3.2e-12  Score=103.52  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcC----CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494           97 PCLKRKPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus        97 P~lkrgpWTeEEDelLLeLvkk~G----nkWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      +...+++||.+||++|++++.+||    ++|.+||++|||||.+||++||+.++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            446788999999999999999999    689999999999999999999998874

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.25  E-value=3.3e-12  Score=104.63  Aligned_cols=48  Identities=15%  Similarity=0.324  Sum_probs=44.9

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 012494           98 CLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNST  145 (462)
Q Consensus        98 ~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnsl  145 (462)
                      ...+++||+|||++|++++.+||++|.+||++|++||+.||++||+.+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            356789999999999999999999999999999999999999999765

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.25  E-value=2.6e-12  Score=104.01  Aligned_cols=53  Identities=23%  Similarity=0.549  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHhhhCCCCCccccccccccccC
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFG---ARNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG---~~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      .+...+++||++||++|++++.+||   ..+|.+||++|||||.+||+.||.+++.
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999   3579999999999999999999988765

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.24  E-value=9.6e-12  Score=108.73  Aligned_cols=52  Identities=33%  Similarity=0.634  Sum_probs=48.5

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494           96 DPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus        96 ~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      .+..++++||+|||++|++++.+||.+|..||..|+|||..||+.||+++|.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   57 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA   57 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence            4567899999999999999999999999999999999999999999999883

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.87  E-value=8.4e-13  Score=109.94  Aligned_cols=57  Identities=19%  Similarity=0.324  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCC
Q 012494           40 GGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP   97 (462)
Q Consensus        40 s~~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P   97 (462)
                      .....+...+|+||+|||++|+++|.+||. +|..||+.|++||..||+.||.++|..
T Consensus         7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            345577899999999999999999999996 899999999999999999999998863

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.22  E-value=1.1e-11  Score=104.44  Aligned_cols=48  Identities=38%  Similarity=0.708  Sum_probs=45.8

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHH
Q 012494           99 LKRKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslL  146 (462)
                      +++++||+|||++|+++|.+||. +|..||..|||||+.||++||..+|
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL   50 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence            67899999999999999999996 7999999999999999999999877

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.16  E-value=3.8e-11  Score=99.40  Aligned_cols=50  Identities=20%  Similarity=0.408  Sum_probs=46.1

Q ss_pred             CCCChHHHHHHHHHHHHcCC-chHHHhhh----CCCCCHHHHHHHHHHHHHhhhh
Q 012494          102 KPFTDEEDQIIISAHAVHGN-KWAVIARL----LPGRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~Gn-kWskIAk~----LPGRT~~QcKnRWnslLkkkl~  151 (462)
                      .+||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++....
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~   55 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence            48999999999999999996 99999996    8999999999999999987653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.13  E-value=4.9e-11  Score=101.38  Aligned_cols=47  Identities=26%  Similarity=0.494  Sum_probs=44.4

Q ss_pred             CCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      +++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYIN   48 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence            578999999999999999995 89999999999999999999999884

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.12  E-value=8.6e-11  Score=103.58  Aligned_cols=57  Identities=21%  Similarity=0.387  Sum_probs=51.3

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHHHHcCC-chHHHhhh----CCCCCHHHHHHHHHHHHHhhh
Q 012494           94 QLDPCLKRKPFTDEEDQIIISAHAVHGN-KWAVIARL----LPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus        94 ~L~P~lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~----LPGRT~~QcKnRWnslLkkkl  150 (462)
                      -+.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++...
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            3556778999999999999999999996 99999997    489999999999999998644

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.12  E-value=3.2e-11  Score=116.84  Aligned_cols=55  Identities=27%  Similarity=0.547  Sum_probs=48.8

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcCCc------hHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494           97 PCLKRKPFTDEEDQIIISAHAVHGNK------WAVIARLLPGRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus        97 P~lkrgpWTeEEDelLLeLvkk~Gnk------WskIAk~LPGRT~~QcKnRWnslLkkkl~  151 (462)
                      +.+++++||+|||++|+++|+++|++      |..||++|||||++|||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35678999999999999999999985      99999999999999999999999999865

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.11  E-value=1e-10  Score=100.80  Aligned_cols=54  Identities=20%  Similarity=0.372  Sum_probs=48.9

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcCC-chHHHhhhC----CCCCHHHHHHHHHHHHHhhh
Q 012494           97 PCLKRKPFTDEEDQIIISAHAVHGN-KWAVIARLL----PGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus        97 P~lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~L----PGRT~~QcKnRWnslLkkkl  150 (462)
                      +..++++||.|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++...
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            4567899999999999999999996 999999965    89999999999999997644

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.11  E-value=7.6e-11  Score=92.91  Aligned_cols=50  Identities=24%  Similarity=0.416  Sum_probs=46.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCchHHHh---hhCCCCCHHHHHHHHHHHHHh
Q 012494           99 LKRKPFTDEEDQIIISAHAVHGNKWAVIA---RLLPGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~GnkWskIA---k~LPGRT~~QcKnRWnslLkk  148 (462)
                      .++.+||+|||+.|+++|++||.+|+.|+   .++++||..++|+||+++.++
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            36789999999999999999999999999   578999999999999998865

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.09  E-value=1.3e-10  Score=98.02  Aligned_cols=50  Identities=28%  Similarity=0.549  Sum_probs=45.8

Q ss_pred             CCCCCChHHHHHHHHHHHHcC----CchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494          100 KRKPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTLRRR  149 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~G----nkWskIAk~LPGRT~~QcKnRWnslLkkk  149 (462)
                      ..++||.|||++|++++.+||    ++|.+||+.|||||.++|++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    78999999999999999999999988664

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.04  E-value=3.6e-10  Score=99.71  Aligned_cols=55  Identities=22%  Similarity=0.394  Sum_probs=49.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcCC-chHHHhhh----CCCCCHHHHHHHHHHHHHhhhh
Q 012494           97 PCLKRKPFTDEEDQIIISAHAVHGN-KWAVIARL----LPGRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus        97 P~lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~----LPGRT~~QcKnRWnslLkkkl~  151 (462)
                      ...++++||.|||+.|+++|.+||. +|+.|++.    |++||+.+||+||+++++....
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~   86 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI   86 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence            3457899999999999999999996 99999996    4899999999999999987543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.95  E-value=1.8e-10  Score=97.15  Aligned_cols=48  Identities=21%  Similarity=0.547  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCCHHHHhhhCCCCCcccccccccccc
Q 012494           48 VKGPWSPEEDAVLSRLVSQFG---ARNWGMIARGIPGRSGKSCRLRWCNQL   95 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG---~~nWskIAk~LpgRS~kQCR~RW~n~L   95 (462)
                      .+++||+|||++|++++.+|+   .++|.+||+.|||||.+||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            467899999999999999997   457999999999999999999998764

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.86  E-value=1.4e-09  Score=85.74  Aligned_cols=51  Identities=20%  Similarity=0.255  Sum_probs=45.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHh---hhCCCCCccccccccccccC
Q 012494           45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIA---RGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIA---k~LpgRS~kQCR~RW~n~L~   96 (462)
                      ..+.+.+||+|||+.|++.|++||. +|+.|+   .++++||...+++||++...
T Consensus         4 ~~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            4 GSSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            3468899999999999999999996 999999   46789999999999988654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=3.1e-09  Score=82.57  Aligned_cols=48  Identities=19%  Similarity=0.196  Sum_probs=44.2

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494          100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      ...+||+||++++++++.+||.+|..||..||+||..||.++|+...+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999976543

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=2.7e-09  Score=82.91  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=44.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccccc
Q 012494           45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL   95 (462)
Q Consensus        45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L   95 (462)
                      .....++||+||++++.+++.+|| ++|..||..|++||..||..+|....
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            335678999999999999999999 68999999999999999999986543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.77  E-value=9.2e-09  Score=86.96  Aligned_cols=65  Identities=11%  Similarity=0.090  Sum_probs=58.4

Q ss_pred             cccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhC-----CCCCHHHHHHHHHHHHHhhhhhc
Q 012494           85 KSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLL-----PGRTDNAIKNHWNSTLRRRYTDL  153 (462)
Q Consensus        85 kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~L-----PGRT~~QcKnRWnslLkkkl~~~  153 (462)
                      .=+.++|.++|.+    .+||.||+..|++|+++|+.+|..|+..+     ++||..++|+||..+.++.+...
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4577899999976    89999999999999999999999999999     58999999999999888766544

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.76  E-value=1.1e-08  Score=82.61  Aligned_cols=52  Identities=15%  Similarity=0.200  Sum_probs=46.1

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcC----CchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494           98 CLKRKPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus        98 ~lkrgpWTeEEDelLLeLvkk~G----nkWskIAk~LPGRT~~QcKnRWnslLkkkl  150 (462)
                      ..+.+.||.||+++|.+++.+|+    ++|.+||..| |||..+|++||+.++....
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~   60 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT   60 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcC
Confidence            34678999999999999999997    6799999998 9999999999999876643

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.70  E-value=1.3e-08  Score=97.96  Aligned_cols=49  Identities=20%  Similarity=0.310  Sum_probs=45.7

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494          100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk  148 (462)
                      ...+||+||+.++++++.+||++|..||+.|++||..||+++|+.+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999987755

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.61  E-value=1.2e-08  Score=82.28  Aligned_cols=51  Identities=25%  Similarity=0.375  Sum_probs=44.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHhhhCCCCCccccccccccccC
Q 012494           45 SSRVKGPWSPEEDAVLSRLVSQFG---ARNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        45 ~~~kKG~WT~EEDelLl~lV~kyG---~~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      ++...+.||.|||++|.+++.+|+   .+.|.+||..| |||..+|+.||..+.+
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            445577899999999999999997   35699999998 9999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.53  E-value=4.4e-08  Score=103.13  Aligned_cols=45  Identities=18%  Similarity=0.287  Sum_probs=42.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494          102 KPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslL  146 (462)
                      ..||.||..++++++.+||.+|..||..++.||..||+++|..+.
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999997543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.38  E-value=2.8e-07  Score=74.75  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=42.3

Q ss_pred             CCCCChHHHHHHHHHHHHcC----CchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~G----nkWskIAk~LPGRT~~QcKnRWnslL  146 (462)
                      ...||.+|+++|.+++..|+    ++|.+||..+||||..+|+.||..++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46899999999999999998    46999999999999999999998764

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.32  E-value=3.1e-07  Score=88.57  Aligned_cols=51  Identities=18%  Similarity=0.348  Sum_probs=46.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccC
Q 012494           45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      ..+...+||+||++++++++.+|| ++|..||+.|++||..||+.+|.++..
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            335678999999999999999999 689999999999999999999987764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.28  E-value=7.4e-07  Score=72.28  Aligned_cols=48  Identities=17%  Similarity=0.351  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCHHHHhhhCCCCCccccccccccccCC
Q 012494           50 GPWSPEEDAVLSRLVSQFGA---RNWGMIARGIPGRSGKSCRLRWCNQLDP   97 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~---~nWskIAk~LpgRS~kQCR~RW~n~L~P   97 (462)
                      ..||.+|+++|.+++..|+.   ++|.+||..|++||..+|+.||...+.-
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            56999999999999999974   4699999999999999999999877653

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.27  E-value=9.2e-07  Score=68.66  Aligned_cols=47  Identities=28%  Similarity=0.514  Sum_probs=42.4

Q ss_pred             CCCCChHHHHHHHHHHHHc--------CCc-hHHHhh-hCCCCCHHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVH--------GNK-WAVIAR-LLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~--------Gnk-WskIAk-~LPGRT~~QcKnRWnslLk  147 (462)
                      +.+||.|||+.|++.+..|        |++ |..+++ .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        544 999999 8999999999999988763

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.27  E-value=2.9e-07  Score=71.45  Aligned_cols=48  Identities=17%  Similarity=0.338  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCHHHHhh-hCCCCCccccccccccccC
Q 012494           49 KGPWSPEEDAVLSRLVSQF--------GARNWGMIAR-GIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~ky--------G~~nWskIAk-~LpgRS~kQCR~RW~n~L~   96 (462)
                      |.+||+|||++|+++|.+|        |..-|+.+++ .++++|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        3334999999 7999999999999998874

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.16  E-value=4.7e-06  Score=83.45  Aligned_cols=100  Identities=16%  Similarity=0.262  Sum_probs=80.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccc-------ccccc----------------------------
Q 012494           50 GPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRL-------RWCNQ----------------------------   94 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~-------RW~n~----------------------------   94 (462)
                      +.||..+...++.++.+||..+|..||..|.++|...++.       ||..+                            
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999999999999877643       22100                            


Q ss_pred             ------------c---CCCCCCCCCChHHHHHHHHHHHHcCC----chHHHhh------------hCCCCCHHHHHHHHH
Q 012494           95 ------------L---DPCLKRKPFTDEEDQIIISAHAVHGN----KWAVIAR------------LLPGRTDNAIKNHWN  143 (462)
Q Consensus        95 ------------L---~P~lkrgpWTeEEDelLLeLvkk~Gn----kWskIAk------------~LPGRT~~QcKnRWn  143 (462)
                                  |   -+..+...||++||..||-++.+||-    .|..|..            ++..||+.+|..|.+
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                        0   02234578999999999999999984    6999972            456799999999999


Q ss_pred             HHHHhh
Q 012494          144 STLRRR  149 (462)
Q Consensus       144 slLkkk  149 (462)
                      .+++-.
T Consensus       271 tLi~~i  276 (304)
T 1ofc_X          271 TLITLI  276 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998654

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=1.4e-05  Score=62.53  Aligned_cols=50  Identities=16%  Similarity=0.223  Sum_probs=45.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHcCCchHHHhh-hCCCCCHHHHHHHHHHHH
Q 012494           97 PCLKRKPFTDEEDQIIISAHAVHGNKWAVIAR-LLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus        97 P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk-~LPGRT~~QcKnRWnslL  146 (462)
                      |.+....||+||-.++.+++.+||.+|..|++ .|++||..+|...|+...
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK   55 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK   55 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence            56778899999999999999999999999999 599999999999886533

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.81  E-value=4.8e-05  Score=64.14  Aligned_cols=47  Identities=19%  Similarity=0.388  Sum_probs=43.2

Q ss_pred             CCCChHHHHHHHHHHHHcCC---chHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494          102 KPFTDEEDQIIISAHAVHGN---KWAVIARLLPGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~Gn---kWskIAk~LPGRT~~QcKnRWnslLkk  148 (462)
                      --||.|||+.||..+++.|.   .|+.||+.|.+|+.+|+++||+.+++-
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            46999999999999999986   799999999999999999999998753

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.81  E-value=1.6e-05  Score=62.07  Aligned_cols=50  Identities=20%  Similarity=0.301  Sum_probs=43.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhh-hCCCCCcccccccccc
Q 012494           43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIAR-GIPGRSGKSCRLRWCN   93 (462)
Q Consensus        43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk-~LpgRS~kQCR~RW~n   93 (462)
                      +.|......||+||-++..+++.+||. +|..|++ .|++|+..+|...|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhc
Confidence            345667789999999999999999995 8999999 5899999999887754

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.75  E-value=4e-06  Score=68.15  Aligned_cols=44  Identities=18%  Similarity=0.389  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHhhhCCCCCccccccccc
Q 012494           49 KGPWSPEEDAVLSRLVSQFGA---RNWGMIARGIPGRSGKSCRLRWC   92 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~---~nWskIAk~LpgRS~kQCR~RW~   92 (462)
                      ...||.+|+++|.+++.+|..   ..|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            446999999999999999974   36999999999999999999985

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.71  E-value=6.2e-06  Score=67.03  Aligned_cols=43  Identities=23%  Similarity=0.512  Sum_probs=38.5

Q ss_pred             CCCCChHHHHHHHHHHHHcCC----chHHHhhhCCCCCHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHGN----KWAVIARLLPGRTDNAIKNHWN  143 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~Gn----kWskIAk~LPGRT~~QcKnRWn  143 (462)
                      ...||.+|+++|.+++..|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999883

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.87  E-value=5.3e-06  Score=66.53  Aligned_cols=44  Identities=18%  Similarity=0.420  Sum_probs=41.2

Q ss_pred             CCChHHHHHHHHHHHHcCC---chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494          103 PFTDEEDQIIISAHAVHGN---KWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       103 pWTeEEDelLLeLvkk~Gn---kWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      -||.|||..||..+++-|.   .|+.||..| +||++||++||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            6999999999999999996   699999999 9999999999998774

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.59  E-value=0.00013  Score=61.66  Aligned_cols=51  Identities=12%  Similarity=0.151  Sum_probs=46.3

Q ss_pred             CCCChHHHHHHHHHHHHcCCchHHHhhhCC-----CCCHHHHHHHHHHHHHhhhhh
Q 012494          102 KPFTDEEDQIIISAHAVHGNKWAVIARLLP-----GRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~GnkWskIAk~LP-----GRT~~QcKnRWnslLkkkl~~  152 (462)
                      ..||.||...|++|+++|.-+|..|+..+.     .||-.++|.||..+.++.+..
T Consensus        31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999874     799999999999998776543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.47  E-value=0.00021  Score=56.98  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=41.5

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCchHHHhh-hCCCCCHHHHHHHHHH
Q 012494          100 KRKPFTDEEDQIIISAHAVHGNKWAVIAR-LLPGRTDNAIKNHWNS  144 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~GnkWskIAk-~LPGRT~~QcKnRWns  144 (462)
                      ....||+||-.++.+++.+||.+|..|++ .|++||..+|...|+.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            34689999999999999999999999999 6999999999999874

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.45  E-value=0.00016  Score=60.69  Aligned_cols=45  Identities=16%  Similarity=0.203  Sum_probs=42.0

Q ss_pred             CCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNST  145 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnsl  145 (462)
                      ...||+||.+++.+.+..||.+|..||..||+||..+|-..|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            468999999999999999999999999999999999999988654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.44  E-value=7.7e-05  Score=78.75  Aligned_cols=49  Identities=18%  Similarity=0.380  Sum_probs=44.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccc
Q 012494           45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQ   94 (462)
Q Consensus        45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~   94 (462)
                      ..+...+||.||-+++++++.+|| ++|..||+.|.+||..||+.+|.++
T Consensus       376 ~~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          376 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345678999999999999999999 5999999999999999999988754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.31  E-value=0.00023  Score=56.71  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhh-hCCCCCcccccccccc
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIAR-GIPGRSGKSCRLRWCN   93 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk-~LpgRS~kQCR~RW~n   93 (462)
                      .....||+||-++..+++.+||. +|..|++ .|++|+..+|...|..
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence            45668999999999999999995 8999999 5999999999887754

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.20  E-value=0.0013  Score=61.14  Aligned_cols=102  Identities=16%  Similarity=0.163  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC--CCCHHHHhhh--CCCCCccccccccc-------c----------------------
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFG--ARNWGMIARG--IPGRSGKSCRLRWC-------N----------------------   93 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG--~~nWskIAk~--LpgRS~kQCR~RW~-------n----------------------   93 (462)
                      -....||..|-..|++++.+||  ...|..|+..  |.+|+...+..-+.       .                      
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~   84 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP   84 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence            3456799999999999999999  5679999864  56777544332000       0                      


Q ss_pred             ----------------------cc------------C--------CCCCCCCCChHHHHHHHHHHHHcC-CchHHHhh--
Q 012494           94 ----------------------QL------------D--------PCLKRKPFTDEEDQIIISAHAVHG-NKWAVIAR--  128 (462)
Q Consensus        94 ----------------------~L------------~--------P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk--  128 (462)
                                            .|            +        +......||.+||..||..+.+|| ++|..|-.  
T Consensus        85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~  164 (211)
T 4b4c_A           85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP  164 (211)
T ss_dssp             EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred             hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence                                  00            0        001123699999999999999999 89999966  


Q ss_pred             hC------------CCCCHHHHHHHHHHHHHh
Q 012494          129 LL------------PGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus       129 ~L------------PGRT~~QcKnRWnslLkk  148 (462)
                      .|            ..++...+..|...+|+-
T Consensus       165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             hcCccccccccccccCCChHHHHHHHHHHHHH
Confidence            21            124567899998877753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.16  E-value=0.00023  Score=59.80  Aligned_cols=44  Identities=23%  Similarity=0.402  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccc
Q 012494           49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCN   93 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n   93 (462)
                      ...||+||.+++.+++..|| ++|..||..|++||..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence            45699999999999999999 589999999999999999887643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.11  E-value=0.00036  Score=56.82  Aligned_cols=51  Identities=14%  Similarity=0.402  Sum_probs=41.2

Q ss_pred             CCCCChHHHHHHHHHHHHcCC----------chHHHhhhCC----CCCHHHHHHHHHHHHHhhhhh
Q 012494          101 RKPFTDEEDQIIISAHAVHGN----------KWAVIARLLP----GRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~Gn----------kWskIAk~LP----GRT~~QcKnRWnslLkkkl~~  152 (462)
                      ...||.+|...||+++..+..          .|..||..|.    .||+.||+++|.++.+. |..
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~-Yk~   68 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE-FKK   68 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHH
Confidence            468999999999999976322          4999999863    69999999999886654 544

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.11  E-value=0.00023  Score=60.19  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHhhhC-----CCCCcccccccccccc
Q 012494           50 GPWSPEEDAVLSRLVSQFGARNWGMIARGI-----PGRSGKSCRLRWCNQL   95 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~~nWskIAk~L-----pgRS~kQCR~RW~n~L   95 (462)
                      ..||.||+..|++++++|+. .|..|+..+     ++||..+++.||..+.
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            68999999999999999996 799999998     4799999999997643

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.00  E-value=0.0021  Score=66.00  Aligned_cols=103  Identities=18%  Similarity=0.304  Sum_probs=79.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC-CCCcccccc-------cccc------c---------------------
Q 012494           50 GPWSPEEDAVLSRLVSQFGARNWGMIARGIP-GRSGKSCRL-------RWCN------Q---------------------   94 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~~nWskIAk~Lp-gRS~kQCR~-------RW~n------~---------------------   94 (462)
                      +.||.-+=..++.++.+||..+-..||..|. +++...++.       ||..      +                     
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999989999999996 888766552       1111      0                     


Q ss_pred             -------------c----CCC-CCCCCCChHHHHHHHHHHHHcC----CchHHHhhh------------CCCCCHHHHHH
Q 012494           95 -------------L----DPC-LKRKPFTDEEDQIIISAHAVHG----NKWAVIARL------------LPGRTDNAIKN  140 (462)
Q Consensus        95 -------------L----~P~-lkrgpWTeEEDelLLeLvkk~G----nkWskIAk~------------LPGRT~~QcKn  140 (462)
                                   |    .++ .+...||++||..||-++.+||    +.|..|-..            |..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0    011 1356899999999999999998    469999442            45799999999


Q ss_pred             HHHHHHHhhhhh
Q 012494          141 HWNSTLRRRYTD  152 (462)
Q Consensus       141 RWnslLkkkl~~  152 (462)
                      |.+.|++-.-+.
T Consensus       284 Rc~tLi~~IeKE  295 (374)
T 2y9y_A          284 RGNTLLQCLEKE  295 (374)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            999999765444

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.60  E-value=0.00047  Score=56.12  Aligned_cols=49  Identities=22%  Similarity=0.445  Sum_probs=39.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC------CC---CHHHHhhhCC----CCCcccccccccccc
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFG------AR---NWGMIARGIP----GRSGKSCRLRWCNQL   95 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG------~~---nWskIAk~Lp----gRS~kQCR~RW~n~L   95 (462)
                      .+...||.+|-.+|+.+...+.      ..   -|..||..|.    .||+.||+.+|.+..
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4567899999999999997542      11   3999999873    699999999998754

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.21  E-value=0.00077  Score=54.11  Aligned_cols=46  Identities=13%  Similarity=0.306  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCHHHHhhhCCCCCccccccccccccC
Q 012494           50 GPWSPEEDAVLSRLVSQFGA--RNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~--~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      -.||.|||..|+..+++-|.  ..|..||+.| +|+..|+.+||+..+.
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            35999999999999999985  3699999999 9999999999987654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.09  E-value=0.0086  Score=50.57  Aligned_cols=45  Identities=18%  Similarity=0.373  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCHHHHhhhCCCCCccccccccccc
Q 012494           50 GPWSPEEDAVLSRLVSQFGA--RNWGMIARGIPGRSGKSCRLRWCNQ   94 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~--~nWskIAk~LpgRS~kQCR~RW~n~   94 (462)
                      -.||.|||..|+...++.|.  ..|..||+.|.+|+..|+.+||+..
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence            36999999999999999984  4699999999999999999999763

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.29  E-value=0.051  Score=45.89  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC-----CCCcccccccccccc
Q 012494           50 GPWSPEEDAVLSRLVSQFGARNWGMIARGIP-----GRSGKSCRLRWCNQL   95 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~~nWskIAk~Lp-----gRS~kQCR~RW~n~L   95 (462)
                      ..||.||...|.+++++|.. .|-.|+....     .|+..+.++||..+.
T Consensus        31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            46999999999999999996 6999998763     688888888887643

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.57  E-value=0.29  Score=38.68  Aligned_cols=48  Identities=19%  Similarity=0.122  Sum_probs=40.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCc---hHHHhhhC--CCCCHHHHHHHHHHHH
Q 012494           99 LKRKPFTDEEDQIIISAHAVHGNK---WAVIARLL--PGRTDNAIKNHWNSTL  146 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~Gnk---WskIAk~L--PGRT~~QcKnRWnslL  146 (462)
                      ..+-.||+|..+.+++++.++|..   |..|.+.|  +|.|..+|+.|.+.+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            346689999999999999999965   78999875  6899999998876643

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.00  E-value=0.14  Score=40.41  Aligned_cols=50  Identities=10%  Similarity=0.090  Sum_probs=39.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHhhhC--CCCCcccccccccc
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARN--WGMIARGI--PGRSGKSCRLRWCN   93 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~n--WskIAk~L--pgRS~kQCR~RW~n   93 (462)
                      ...+.+-.||+|..+.++++|.+.|...  |+.|.+.|  ++.|..++.-|.+.
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            3457788999999999999999999432  88998876  57777777665443

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.88  E-value=0.25  Score=49.54  Aligned_cols=49  Identities=18%  Similarity=0.178  Sum_probs=41.6

Q ss_pred             CCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494          101 RKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl  150 (462)
                      .+.||..+...++.++.+|| ++|..||..|+|+|..+|+.++.... .++
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw-~ry  159 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW-ERC  159 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH-HHG
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhH
Confidence            46899999999999999999 57999999999999999976554444 444

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=90.30  E-value=0.19  Score=49.53  Aligned_cols=28  Identities=32%  Similarity=0.555  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHhh
Q 012494           50 GPWSPEEDAVLSRLVSQFGARNWGMIAR   77 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~~nWskIAk   77 (462)
                      ..|+.+||..|+..|.+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999975

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.12  E-value=0.38  Score=44.34  Aligned_cols=50  Identities=20%  Similarity=0.230  Sum_probs=40.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHcC---CchHHHhh--hCCCCCHHHHHHHHHHHHHh
Q 012494           99 LKRKPFTDEEDQIIISAHAVHG---NKWAVIAR--LLPGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~G---nkWskIAk--~LPGRT~~QcKnRWnslLkk  148 (462)
                      -....||+.|-..|++++.+||   .+|..|+.  .|.+||...++..+..++..
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999   57999987  48899999999877665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	462
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-22
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	3e-13
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-20
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-13
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-20
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-14
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-18
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	5e-14
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-15
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-12
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-15
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-12
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-15
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	8e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-14
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	7e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-08
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	8e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	8e-13
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-10
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-11
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-08
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	7e-07
d1fexa_	59	a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 96	5e-04

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 49  KGPWSPEEDAVLSRLVSQFGAR-----NWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKP 103
           K  ++ EED  +  +V +   R      +  I+  +P  +G S R R+   L   L+   
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 104 FTDEEDQIIISAHA 117
             D+  +++     
Sbjct: 61  EVDKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 101 RKPFTDEEDQIIISAHAVHGNK------WAVIARLLPGRTDNAIKNHWNSTLRRR 149
           +  FTDEED+ I+     +  +      +  I+  +P  T N+I++ +   L +R
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (204), Expect = 1e-20
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          K  W+ EED  L +LV Q G  +W +IA  +P R+   C+ RW   L+P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (150), Expect = 4e-13
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 101 RKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLR 147
           +  +T EED+ +      +G + W VIA  LP RTD   ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (204), Expect = 2e-20
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
          +KGPW+ EED  L +LV ++G + W +IA+ + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (155), Expect = 7e-14
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 99  LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLR 147
           L + P+T EEDQ +I     +G  +W+VIA+ L GR     +  W++ L 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.6 bits (186), Expect = 3e-18
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 101 RKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLR 147
           +  +T+EED+II  AH   GN+WA IA+LLPGRTDNAIKNHWNST+R
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.1 bits (156), Expect = 5e-14
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL 95
          K  W+ EED ++ +   + G   W  IA+ +PGR+  + +  W + +
Sbjct: 1  KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (169), Expect = 1e-15
 Identities = 10/49 (20%), Positives = 23/49 (46%)

Query: 100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148
               +T EE  + + A   +G  +  I+ ++  ++   +KN + +  RR
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCN 93
          +    W+ EE  +  + + ++G R++  I+  I  +S    +  + N
Sbjct: 3  KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVN 48

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 2e-15
 Identities = 7/49 (14%), Positives = 18/49 (36%)

Query: 100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148
               ++++E +        H   + +IA  L  +T      ++  T + 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 4e-12
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCN 93
          +V   WS +E         Q   +N+G+IA  +  ++   C L +  
Sbjct: 15 QVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 60

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 68.9 bits (168), Expect = 2e-15
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 10/82 (12%)

Query: 51  PWSPEEDAVLSRLVSQFGARNWGMIAR----GIPGRSGKSCRLRWCNQLDPCLKRK---- 102
           P+S  E   L   V   G   W  +          R+    + +W   +           
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 103 --PFTDEEDQIIISAHAVHGNK 122
             P   +    +++AHA    +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 42.0 bits (98), Expect = 8e-06
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 102 KPFTDEEDQIIISAHAVHGNK-WAVIARL----LPGRTDNAIKNHWNSTLRRRYTD 152
           +PF+  E + ++ A    G   W  +          RT   +K+ W + +      
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA 56

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 49  KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
              W+ EE  +  + +++FG R W  I++ I  R+    +          +K     +  
Sbjct: 2   SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 109 DQ 110
           +Q
Sbjct: 61  NQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 7e-14
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 101 RKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
              +T EE ++     A  G +W  I++L+  RT   +K++     + +
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 50

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 2e-14
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCN 93
          +  W  EED  L   V ++G  NW  I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 100 KRKPFTDEEDQIIISAHAVHGNK-WAVIARLLP--GRTDNAIKNHWNSTLR 147
           KR+ +  EED+ + S    +G   W+ I        RT   +K+ W +  +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 6e-14
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIAR--GIPGRSGKSCRLRWCNQLDP 97
          K  W+ EE   +   V ++G  NW  I++      R+    + RW      
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 8e-09
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 100 KRKPFTDEEDQIIISAHAVHGNK-WAVIARL--LPGRTDNAIKNHWNSTLRRR 149
           K++ +T EE + + +    +G   WA I++      RT   IK+ W +  R  
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (147), Expect = 8e-13
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 44 SSSRVKGPWSPEEDAVLSRLVSQFGA---RNWGMIARGIPGRSGKSCRLRW 91
           +   + PW+  +  +L   + Q+       W  IAR +P +S + C  R+
Sbjct: 7  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 100 KRKPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHW 142
             +P+T  + +++  A   +     + W  IAR +P ++       +
Sbjct: 11  AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 51  PWSPEEDAVLSRLVSQFGARN---WGMIARGIPGRSGKSCRLRWCNQLDPCLKRK----- 102
           PWS +E+    R ++ +       W  +AR + GR+ +  +  +   L   +K       
Sbjct: 3   PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKYIESGKV 61

Query: 103 PF 104
           PF
Sbjct: 62  PF 63

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 102 KPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTLR 147
           +P++ +E++    A AV+     ++WA +AR + GRT   +K H+   + 
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 52 WSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCN 93
          W+ +E+  L   V   G  NW  +A  +  ++ + C   +  
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 104 FTDEEDQIIISAHAVHGNK-WAVIARLLPGRTDNAIKNHWN 143
           +T +E+  ++ A    G   W  +A  +  +T    + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 76  ARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNK---WAVIARLLPG 132
           A  +P  S  +             K   +T E D++I++     G +   ++VI++ L  
Sbjct: 8   AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN 67

Query: 133 RTDNAIKNHWNSTLRRRYTDL 153
           +T   + + +   ++  +T  
Sbjct: 68  KTPVEVSHRFRELMQLFHTAC 88

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 7e-07
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARN--WGMIARGIPGRSGKSCRLRW 91
          SS+      W+ E D V+  +  + GA+   + +I++ +  ++      R+
Sbjct: 27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 101 RKPFTDEEDQIIISAHAVH--------GNK-WAVIARL-LPGRTDNAIKNHWNSTLR 147
           R  FTD +D  I++    +        GN  W  + +  L   +  ++K+ +   LR
Sbjct: 2   RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	462
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.69
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.59
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.48
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.45
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.42
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.41
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.39
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.36
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.36
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.32
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.31
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.27
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.25
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.24
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.21
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.19
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.12
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.08
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.02
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.01
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.91
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.86
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.67
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.01
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.99
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.74
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.7
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.79
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.3
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.07
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.72
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.01
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	93.33
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	90.23
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	88.45

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.2e-19  Score=149.24  Aligned_cols=71  Identities=21%  Similarity=0.265  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHc
Q 012494           49 KGPWSPEEDAVLSRLVSQFGAR-----NWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVH  119 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~-----nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~  119 (462)
                      |+.||+|||++|+++|.+||..     +|..||+.|||||++||+.||.++|+|.+++++||.+||++|++.+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     3999999999999999999999999999999999999999998766443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=8.2e-18  Score=125.96  Aligned_cols=52  Identities=48%  Similarity=1.053  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCC
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPC   98 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~   98 (462)
                      ++||+||+|||++|+++|.+||.++|..||+.|++||..||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            4799999999999999999999889999999999999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3.6e-17  Score=121.24  Aligned_cols=50  Identities=40%  Similarity=0.800  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCC
Q 012494           49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPC   98 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~   98 (462)
                      |++||+|||++|+++|.+||.++|..||+.|++||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            67899999999999999999889999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=4.9e-16  Score=114.10  Aligned_cols=47  Identities=68%  Similarity=1.143  Sum_probs=45.1

Q ss_pred             CCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      +.+||+|||++|++++.+||++|+.||++|||||++|||+||+.+||
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999874

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=2.9e-15  Score=111.89  Aligned_cols=49  Identities=37%  Similarity=0.706  Sum_probs=46.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494           99 LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus        99 lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      +.+++||.|||++|++++.+|| ++|..||+.|++||+.||++||+++|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            4689999999999999999999 689999999999999999999999874

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.53  E-value=1.7e-15  Score=122.86  Aligned_cols=72  Identities=17%  Similarity=0.320  Sum_probs=59.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHhhh----CCCCCcccccccccccc-----CCCCCCCCCChHHHHHHHHHHHHcCC
Q 012494           51 PWSPEEDAVLSRLVSQFGARNWGMIARG----IPGRSGKSCRLRWCNQL-----DPCLKRKPFTDEEDQIIISAHAVHGN  121 (462)
Q Consensus        51 ~WT~EEDelLl~lV~kyG~~nWskIAk~----LpgRS~kQCR~RW~n~L-----~P~lkrgpWTeEEDelLLeLvkk~Gn  121 (462)
                      +||+|||++|+++|.+||.++|..|++.    +++||+.||++||+|+|     ++..+++.|+++|   |+..+..++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            7999999999999999999999999985    58999999999999988     4677889999777   3444444445


Q ss_pred             chHH
Q 012494          122 KWAV  125 (462)
Q Consensus       122 kWsk  125 (462)
                      +|++
T Consensus        79 ~wsq   82 (83)
T d2ckxa1          79 YWSQ   82 (83)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6763

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.3e-15  Score=111.48  Aligned_cols=53  Identities=23%  Similarity=0.451  Sum_probs=48.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHhhh--CCCCCccccccccccccCCCCC
Q 012494           48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARG--IPGRSGKSCRLRWCNQLDPCLK  100 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG~~nWskIAk~--LpgRS~kQCR~RW~n~L~P~lk  100 (462)
                      +|++||+|||++|+.+|.+||.++|..||+.  +++||+.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999998899999997  5699999999999999988764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4.6e-14  Score=104.24  Aligned_cols=47  Identities=34%  Similarity=0.658  Sum_probs=44.5

Q ss_pred             CCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      ++.||.|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            47899999999999999999 689999999999999999999999884

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=3.2e-14  Score=104.30  Aligned_cols=47  Identities=28%  Similarity=0.703  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccC
Q 012494           49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      |.+||+|||++|+++|.+||. +|..||++|||||+.||+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            678999999999999999996 79999999999999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.6e-14  Score=105.79  Aligned_cols=48  Identities=27%  Similarity=0.425  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC--CCCCcccccccccccc
Q 012494           48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGI--PGRSGKSCRLRWCNQL   95 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG~~nWskIAk~L--pgRS~kQCR~RW~n~L   95 (462)
                      ++++||+|||++|+++|.+||.++|..||+.+  .+||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998999999875  4999999999998865

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.2e-14  Score=103.48  Aligned_cols=45  Identities=20%  Similarity=0.494  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccccc
Q 012494           51 PWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL   95 (462)
Q Consensus        51 ~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L   95 (462)
                      .||.|||++|+++|.+||.+||..||+.|++||+.||+.||.+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            499999999999999999999999999999999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.2e-13  Score=99.92  Aligned_cols=48  Identities=27%  Similarity=0.442  Sum_probs=43.7

Q ss_pred             CCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC--CCCHHHHHHHHHHHHH
Q 012494          100 KRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP--GRTDNAIKNHWNSTLR  147 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~G-nkWskIAk~LP--GRT~~QcKnRWnslLk  147 (462)
                      ++++||+|||++|+++|.+|| ++|..||+.++  +||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 58999999754  8999999999999764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.7e-13  Score=100.64  Aligned_cols=50  Identities=28%  Similarity=0.486  Sum_probs=45.7

Q ss_pred             CCCCCChHHHHHHHHHHHHcC-CchHHHhhh--CCCCCHHHHHHHHHHHHHhh
Q 012494          100 KRKPFTDEEDQIIISAHAVHG-NKWAVIARL--LPGRTDNAIKNHWNSTLRRR  149 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~G-nkWskIAk~--LPGRT~~QcKnRWnslLkkk  149 (462)
                      ++.+||+|||++|+++|.+|| ++|..||+.  |++||+.||++||+++++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            467999999999999999999 689999997  56999999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=4.5e-13  Score=109.52  Aligned_cols=52  Identities=27%  Similarity=0.518  Sum_probs=48.0

Q ss_pred             CCCCChHHHHHHHHHHHHcCCc------hHHHhhhCCCCCHHHHHHHHHHHHHhhhhh
Q 012494          101 RKPFTDEEDQIIISAHAVHGNK------WAVIARLLPGRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~Gnk------WskIAk~LPGRT~~QcKnRWnslLkkkl~~  152 (462)
                      +++||+|||++|+++|.+||.+      |..||+.|||||+.||++||+++|...+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~   58 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY   58 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccC
Confidence            5799999999999999999964      999999999999999999999999887643

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.1e-12  Score=100.66  Aligned_cols=51  Identities=22%  Similarity=0.352  Sum_probs=47.3

Q ss_pred             CCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494          101 RKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkkl~  151 (462)
                      ...||.|||++|++++.+||.+|..||++||+||+.||++||+.++++...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            357999999999999999999999999999999999999999999877653

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.1e-13  Score=100.56  Aligned_cols=52  Identities=23%  Similarity=0.534  Sum_probs=46.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCC---CHHHHhhhCCCCCcccccccccc
Q 012494           42 GSSSSRVKGPWSPEEDAVLSRLVSQFGAR---NWGMIARGIPGRSGKSCRLRWCN   93 (462)
Q Consensus        42 ~~~~~~kKG~WT~EEDelLl~lV~kyG~~---nWskIAk~LpgRS~kQCR~RW~n   93 (462)
                      ...+...+++||+|||++|+++|.+||.+   +|..||+.|++||+.||+.||+.
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            34566788899999999999999999965   49999999999999999999964

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2e-12  Score=94.43  Aligned_cols=43  Identities=19%  Similarity=0.381  Sum_probs=40.9

Q ss_pred             CCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHH
Q 012494          103 PFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNST  145 (462)
Q Consensus       103 pWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnsl  145 (462)
                      .||.|||.+|++++.+|| ++|..||++|++||+.||++||+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6799999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.7e-13  Score=103.40  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=51.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChH
Q 012494           49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE  107 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeE  107 (462)
                      ..+||+|||++|+++|.+|| .+|..||++|++||..||+.||.++|++..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            35799999999999999999 59999999999999999999999999887776665543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.7e-12  Score=95.79  Aligned_cols=50  Identities=16%  Similarity=0.304  Sum_probs=45.2

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHcCC----chHHHhhhCCCCCHHHHHHHHHHH
Q 012494           96 DPCLKRKPFTDEEDQIIISAHAVHGN----KWAVIARLLPGRTDNAIKNHWNST  145 (462)
Q Consensus        96 ~P~lkrgpWTeEEDelLLeLvkk~Gn----kWskIAk~LPGRT~~QcKnRWnsl  145 (462)
                      .+...+.+||.|||++|++++.+||.    +|.+||..|||||..||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45567789999999999999999985    599999999999999999999764

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1e-11  Score=103.18  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=66.2

Q ss_pred             hhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCc---hHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494           77 RGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNK---WAVIARLLPGRTDNAIKNHWNSTLRRRY  150 (462)
Q Consensus        77 k~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~Gnk---WskIAk~LPGRT~~QcKnRWnslLkkkl  150 (462)
                      ..+|..+..++..++.+..+.......||.|||+.||+.++++|.+   |..||+.|+|||.+||++||+.+++..-
T Consensus         9 ~~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_           9 GALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            3567788888889998888888888999999999999999999987   9999999999999999999988876543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.19  E-value=1.4e-11  Score=94.53  Aligned_cols=47  Identities=30%  Similarity=0.598  Sum_probs=42.9

Q ss_pred             CCCChHHHHHHHHHHHHcCC----chHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494          102 KPFTDEEDQIIISAHAVHGN----KWAVIARLLPGRTDNAIKNHWNSTLRR  148 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~Gn----kWskIAk~LPGRT~~QcKnRWnslLkk  148 (462)
                      .+||.|||.+|++++++||.    +|.+||..|||||..||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999985    599999999999999999999776654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.12  E-value=9.5e-12  Score=95.49  Aligned_cols=44  Identities=23%  Similarity=0.607  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---HHHHhhhCCCCCcccccccccc
Q 012494           50 GPWSPEEDAVLSRLVSQFGARN---WGMIARGIPGRSGKSCRLRWCN   93 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~~n---WskIAk~LpgRS~kQCR~RW~n   93 (462)
                      .+||+|||++|+++|.+||.++   |.+||..|++||..||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4699999999999999999754   9999999999999999999953

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.08  E-value=7.9e-11  Score=94.99  Aligned_cols=51  Identities=20%  Similarity=0.398  Sum_probs=45.9

Q ss_pred             CCCChHHHHHHHHHHHHcC-CchHHHhhh----CCCCCHHHHHHHHHHHHHhhhhh
Q 012494          102 KPFTDEEDQIIISAHAVHG-NKWAVIARL----LPGRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~G-nkWskIAk~----LPGRT~~QcKnRWnslLkkkl~~  152 (462)
                      .+||.|||++|+++|.+|| ++|..|++.    +++||+.||++||+++|+.....
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            4899999999999999999 589999985    68999999999999999876544

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-10  Score=89.73  Aligned_cols=47  Identities=19%  Similarity=0.310  Sum_probs=44.1

Q ss_pred             CCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLk  147 (462)
                      ...||++|+++|++++..||.+|..||..|+|||..||+++|+.+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999988654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=9.5e-11  Score=90.87  Aligned_cols=47  Identities=15%  Similarity=0.168  Sum_probs=43.6

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494          100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslL  146 (462)
                      ...+||.||+++|++++.+||.+|..||..|||||..||+++|+...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999997643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.9e-10  Score=87.21  Aligned_cols=48  Identities=19%  Similarity=0.362  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccC
Q 012494           48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        48 kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~   96 (462)
                      ...+||++||++|+.++.+|| .+|..||..|++||..||+.+|.++.+
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            446799999999999999999 589999999999999999999987653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.5e-10  Score=88.41  Aligned_cols=51  Identities=22%  Similarity=0.368  Sum_probs=45.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccccc
Q 012494           44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL   95 (462)
Q Consensus        44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L   95 (462)
                      .......+||+|||++|+.++.+|| .+|..||..|++||..||+.+|....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            4455667899999999999999999 58999999999999999999997643

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.5e-08  Score=83.95  Aligned_cols=53  Identities=19%  Similarity=0.314  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHhhhCCCCCccccccccccc
Q 012494           42 GSSSSRVKGPWSPEEDAVLSRLVSQFGARN--WGMIARGIPGRSGKSCRLRWCNQ   94 (462)
Q Consensus        42 ~~~~~~kKG~WT~EEDelLl~lV~kyG~~n--WskIAk~LpgRS~kQCR~RW~n~   94 (462)
                      ...+..+...||.|||++|+..++++|...  |..||+.|++|++.||++||...
T Consensus        26 ~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          26 VSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             cCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            334455677899999999999999999643  99999999999999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=4.8e-06  Score=62.24  Aligned_cols=44  Identities=16%  Similarity=0.165  Sum_probs=40.4

Q ss_pred             CCCChHHHHHHHHHHHHcCCchHHHhhh-CCCCCHHHHHHHHHHH
Q 012494          102 KPFTDEEDQIIISAHAVHGNKWAVIARL-LPGRTDNAIKNHWNST  145 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~GnkWskIAk~-LPGRT~~QcKnRWnsl  145 (462)
                      ..||+||-.++.+++..||.+|..|++. +|+||..||.+.|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4799999999999999999999999985 6999999999999753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.5e-06  Score=63.89  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=40.3

Q ss_pred             CCCChHHHHHHHHHHHHcC----CchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494          102 KPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus       102 gpWTeEEDelLLeLvkk~G----nkWskIAk~LPGRT~~QcKnRWnslL  146 (462)
                      ..||.+|+.+|.+++.+|+    ++|.+||..| |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999997    5799999999 999999999997654

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=5.6e-06  Score=62.74  Aligned_cols=44  Identities=25%  Similarity=0.426  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCHHHHhhhCCCCCccccccccccc
Q 012494           50 GPWSPEEDAVLSRLVSQFGA---RNWGMIARGIPGRSGKSCRLRWCNQ   94 (462)
Q Consensus        50 G~WT~EEDelLl~lV~kyG~---~nWskIAk~LpgRS~kQCR~RW~n~   94 (462)
                      +.||.+|+.+|.+++.+|..   ..|.+||..| ||+..+|..||+..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            46999999999999999963   3599999999 99999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=8.7e-06  Score=60.81  Aligned_cols=43  Identities=19%  Similarity=0.383  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHhhh-CCCCCccccccccccc
Q 012494           51 PWSPEEDAVLSRLVSQFGARNWGMIARG-IPGRSGKSCRLRWCNQ   94 (462)
Q Consensus        51 ~WT~EEDelLl~lV~kyG~~nWskIAk~-LpgRS~kQCR~RW~n~   94 (462)
                      .||+||-.++.+++..|| ++|..|++. +++||..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            599999999999999999 599999985 6999999999987653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00046  Score=51.93  Aligned_cols=47  Identities=26%  Similarity=0.471  Sum_probs=40.6

Q ss_pred             CCCCChHHHHHHHHHHHHcC--------Cc-hHHHhh-hCCCCCHHHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHG--------NK-WAVIAR-LLPGRTDNAIKNHWNSTLR  147 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~G--------nk-WskIAk-~LPGRT~~QcKnRWnslLk  147 (462)
                      +.+||.+||+.|++.++.+.        |. |..+++ .++.+|..+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999998873        22 999996 6899999999999988774

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.0016  Score=46.52  Aligned_cols=45  Identities=27%  Similarity=0.465  Sum_probs=40.1

Q ss_pred             CCCCChHHHHHHHHHHHHcCCchHHHhhhC---CCCCHHHHHHHHHHH
Q 012494          101 RKPFTDEEDQIIISAHAVHGNKWAVIARLL---PGRTDNAIKNHWNST  145 (462)
Q Consensus       101 rgpWTeEEDelLLeLvkk~GnkWskIAk~L---PGRT~~QcKnRWnsl  145 (462)
                      +..||+||-.-|+..++.+|+.|..|-=.+   |||+..++-.+|..+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            457999999999999999999999997644   799999999999765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00067  Score=51.03  Aligned_cols=48  Identities=17%  Similarity=0.343  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------C--HHHHhh-hCCCCCccccccccccccC
Q 012494           49 KGPWSPEEDAVLSRLVSQFGAR------N--WGMIAR-GIPGRSGKSCRLRWCNQLD   96 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~------n--WskIAk-~LpgRS~kQCR~RW~n~L~   96 (462)
                      +-+||.|||++|++.|..+...      |  |+.+++ .++.+|-.+-|+||.+.|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4579999999999999998422      2  999995 5799999999999998874

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.30  E-value=0.0013  Score=50.17  Aligned_cols=50  Identities=10%  Similarity=0.074  Sum_probs=39.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCH--HHHhhhC--CCCCccccccccccc
Q 012494           45 SSRVKGPWSPEEDAVLSRLVSQFGARNW--GMIARGI--PGRSGKSCRLRWCNQ   94 (462)
Q Consensus        45 ~~~kKG~WT~EEDelLl~lV~kyG~~nW--skIAk~L--pgRS~kQCR~RW~n~   94 (462)
                      .++.+-.||+||.++++.+|..+|..+|  +.|...|  +++|..||+-+.+.|
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3456778999999999999999996545  5777764  888999988665443

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.07  E-value=0.0076  Score=45.76  Aligned_cols=47  Identities=19%  Similarity=0.157  Sum_probs=39.5

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCch---HHHhhh--CCCCCHHHHHHHHHHHH
Q 012494          100 KRKPFTDEEDQIIISAHAVHGNKW---AVIARL--LPGRTDNAIKNHWNSTL  146 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~GnkW---skIAk~--LPGRT~~QcKnRWnslL  146 (462)
                      .+-.||+||.+++++++..+|..|   ..|...  ++++|..||+.|.+.+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999887   467665  58999999998876654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.024  Score=43.73  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=41.6

Q ss_pred             CCCCCChHHHHHHHHHHHHcCCc----hHHHhhhCCCCCHHHHHHHHHHHH
Q 012494          100 KRKPFTDEEDQIIISAHAVHGNK----WAVIARLLPGRTDNAIKNHWNSTL  146 (462)
Q Consensus       100 krgpWTeEEDelLLeLvkk~Gnk----WskIAk~LPGRT~~QcKnRWnslL  146 (462)
                      ..+.|+++|-++|-.++..+...    |..+|-.+..||+..|..+|...+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~   57 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCc
Confidence            34689999999999999988743    999999999999999999997754

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.04  Score=42.46  Aligned_cols=52  Identities=15%  Similarity=0.291  Sum_probs=43.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CCCHHHHhhhCCCCCccccccccccccCCC
Q 012494           47 RVKGPWSPEEDAVLSRLVSQFG---ARNWGMIARGIPGRSGKSCRLRWCNQLDPC   98 (462)
Q Consensus        47 ~kKG~WT~EEDelLl~lV~kyG---~~nWskIAk~LpgRS~kQCR~RW~n~L~P~   98 (462)
                      ..-+.|+++|-++|-.++....   .+-|..||..+..|++..|..+|...+.-.
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            3456799999999999999775   345999999999999999999998876543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.33  E-value=0.028  Score=40.00  Aligned_cols=44  Identities=20%  Similarity=0.352  Sum_probs=36.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC---CCCCcccccccccc
Q 012494           49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGI---PGRSGKSCRLRWCN   93 (462)
Q Consensus        49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~L---pgRS~kQCR~RW~n   93 (462)
                      +..||.||-.-|...|+++| ..|+.|-=.+   +||++.....+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            35699999999999999999 5899997554   68988887777653

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.23  E-value=0.22  Score=42.13  Aligned_cols=54  Identities=19%  Similarity=0.277  Sum_probs=43.5

Q ss_pred             CCCCCCCChHHHHHHHHHHHHcC-Cc---hHHHhh------------hCCCCCHHHHHHHHHHHHHhhhh
Q 012494           98 CLKRKPFTDEEDQIIISAHAVHG-NK---WAVIAR------------LLPGRTDNAIKNHWNSTLRRRYT  151 (462)
Q Consensus        98 ~lkrgpWTeEEDelLLeLvkk~G-nk---WskIAk------------~LPGRT~~QcKnRWnslLkkkl~  151 (462)
                      ..++..+|+|||.-|+-++.+|| ++   |..|-.            .|..||+..|..|.+++++-.-+
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~k  115 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER  115 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHH
Confidence            44566799999999999999999 44   998843            23489999999999999865443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.45  E-value=0.61  Score=33.68  Aligned_cols=49  Identities=20%  Similarity=0.273  Sum_probs=41.2

Q ss_pred             CCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhhh
Q 012494          103 PFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRYTD  152 (462)
Q Consensus       103 pWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl~~  152 (462)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+... ..+-+++..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~-~vFw~ry~e   50 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN-AVFWERCTE   50 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH-HHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHH-HHHHHHHHh
Confidence            499999999999999999 6899999999999999988744 555555543