Citrus Sinensis ID: 012498

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
Protein Sequence
MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDSYFYFH
Secondary Structure (PSIPRED)
ccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHcccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccEEEEc
Coil and Loop (DISEMBL)
MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLdsaemwsfndtstSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTqhcddvirgqntgtyqretkldefecrdvhinndadtnlvsqrndpaycdieadrkGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEydsyfyfh
Flexible Loop (DISEMBL)
mdenskekeneseALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKtqhcddvirgqntgtyqreTKLDEFECRDVHinndadtnlvsqrndPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDSYFYFH
Low Complexity Region (SEG)
MDenskekeneseALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMeaekakekeeLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDSYFYFH
Disordered region (IsUnstruct)
*********************************EQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAREN**L**ELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA***********************************************************SFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI*********************************SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLV******AYCDI***************LQEKVAALLLLS******LLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDSYFYF*
Disordered Region (DISOPRED)
***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DYQLLQEYDSYFYFH
Disordered Region (DISEMBL)
**************LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALE***********NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDSYFYFH
Disordered Region (DISPRO)
*********NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNT*****ETKLDEFECRDVHINNDA**********************EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDSYFYFH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAGPSYLAVATRMHFQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAxxxxxxxxxxxxxxxxxxxxxLMSQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYxxxxxxxxxxxxxxxxxxxxxLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVKALMELAQLKQDYQLLQEYDSYFYFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
296083035	673	unnamed protein product [Vitis vinifera]	0.976	0.670	0.684	1e-160
359475478	721	PREDICTED: uncharacterized protein LOC10	0.974	0.624	0.683	1e-159
255583327	658	conserved hypothetical protein [Ricinus	0.965	0.677	0.696	1e-159
356495819	653	PREDICTED: uncharacterized protein LOC10	0.956	0.676	0.651	1e-145
238479244	652	myosin heavy chain-related protein [Arab	0.976	0.691	0.604	1e-138
297831932	629	predicted protein [Arabidopsis lyrata su	0.969	0.712	0.608	1e-138
15225987	629	myosin heavy chain-related protein [Arab	0.967	0.710	0.607	1e-137
357480651	586	hypothetical protein MTR_5g005010 [Medic	0.987	0.778	0.591	1e-137
449438615	641	PREDICTED: uncharacterized protein LOC10	0.930	0.670	0.610	1e-133
449479020	641	PREDICTED: uncharacterized LOC101211967	0.932	0.672	0.607	1e-132

>gi|296083035|emb|CBI22439.3| unnamed protein product [Vitis vinifera]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 312/456 (68%), Positives = 365/456 (80%), Gaps = 5/456 (1%)

Query: 7   EKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEI 66
           EK N++E+L+ARIQQLEHERDELRKDIEQLC+QQAGPSYL VATRMHFQRTAGLEQEIE 
Sbjct: 3   EKSNDNESLIARIQQLEHERDELRKDIEQLCIQQAGPSYLVVATRMHFQRTAGLEQEIEN 62

Query: 67  LKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE 126
           LK+K+AA  REN NLQEELSEAYRIK QLADLH AEV KN++AEKQ+KFFQGC+AAAFAE
Sbjct: 63  LKKKVAASTRENLNLQEELSEAYRIKSQLADLHNAEVSKNLDAEKQIKFFQGCVAAAFAE 122

Query: 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186
           RD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ N  L+ DL  QE+ NE+F
Sbjct: 123 RDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQLNVALQIDLANQEDQNETF 182

Query: 187 KEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN---DTSTSKYISALEDELE 242
           K+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN   +TSTSKYI ALE+ELE
Sbjct: 183 KKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNTNEETSTSKYIDALEEELE 242

Query: 243 KTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302
             R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   N I+ L   HSQ R+HVV
Sbjct: 243 MVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFKNRISGLLHYHSQHRLHVV 302

Query: 303 NSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNL 362
           N L+EG+SH+KSI DV+EEK +   D  R QN    QR+ KL E ECRDVH++   D N 
Sbjct: 303 NLLDEGKSHLKSIIDVVEEKIRQL-DADREQNLEPPQRDLKLYENECRDVHVSIVGDHNS 361

Query: 363 VSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIE 422
           V++ N P   +   D  G+ASE  AQA+QEKVAALLLLSQQEERHLLE NVN  LQKK+E
Sbjct: 362 VAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQQEERHLLESNVNIVLQKKME 421

Query: 423 ELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDSY 458
           ELQRNL QVT EKVKALMELAQLKQ+YQLLQE  S+
Sbjct: 422 ELQRNLLQVTNEKVKALMELAQLKQEYQLLQEKISH 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475478|ref|XP_002264967.2| PREDICTED: uncharacterized protein LOC100251573 [Vitis vinifera]

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 311/455 (68%), Positives = 364/455 (80%), Gaps = 5/455 (1%)

Query: 7   EKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEI 66
           EK N++E+L+ARIQQLEHERDELRKDIEQLC+QQAGPSYL VATRMHFQRTAGLEQEIE 
Sbjct: 3   EKSNDNESLIARIQQLEHERDELRKDIEQLCIQQAGPSYLVVATRMHFQRTAGLEQEIEN 62

Query: 67  LKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE 126
           LK+K+AA  REN NLQEELSEAYRIK QLADLH AEV KN++AEKQ+KFFQGC+AAAFAE
Sbjct: 63  LKKKVAASTRENLNLQEELSEAYRIKSQLADLHNAEVSKNLDAEKQIKFFQGCVAAAFAE 122

Query: 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186
           RD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ N  L+ DL  QE+ NE+F
Sbjct: 123 RDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQLNVALQIDLANQEDQNETF 182

Query: 187 KEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN---DTSTSKYISALEDELE 242
           K+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN   +TSTSKYI ALE+ELE
Sbjct: 183 KKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNTNEETSTSKYIDALEEELE 242

Query: 243 KTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302
             R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   N I+ L   HSQ R+HVV
Sbjct: 243 MVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFKNRISGLLHYHSQHRLHVV 302

Query: 303 NSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNL 362
           N L+EG+SH+KSI DV+EEK +   D  R QN    QR+ KL E ECRDVH++   D N 
Sbjct: 303 NLLDEGKSHLKSIIDVVEEKIRQL-DADREQNLEPPQRDLKLYENECRDVHVSIVGDHNS 361

Query: 363 VSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIE 422
           V++ N P   +   D  G+ASE  AQA+QEKVAALLLLSQQEERHLLE NVN  LQKK+E
Sbjct: 362 VAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQQEERHLLESNVNIVLQKKME 421

Query: 423 ELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDS 457
           ELQRNL QVT EKVKALMELAQLKQ+YQLLQ+  S
Sbjct: 422 ELQRNLLQVTNEKVKALMELAQLKQEYQLLQDIRS 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583327|ref|XP_002532426.1| conserved hypothetical protein [Ricinus communis] gi|223527875|gb|EEF29967.1| conserved hypothetical protein [Ricinus communis]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 312/448 (69%), Positives = 356/448 (79%), Gaps = 2/448 (0%)

Query: 12  SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKI 71
           +E+L+ARIQQLEHERDEL KDIEQLCMQQAGPSYLAVAT+MHFQRTAGLEQEIE LK+K+
Sbjct: 8   NESLIARIQQLEHERDELHKDIEQLCMQQAGPSYLAVATKMHFQRTAGLEQEIENLKKKL 67

Query: 72  AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSV 131
           AAC R+N NLQEELSEAYRIK QLADLH AEV KN EAEKQ+KFFQGC+A+AFAERDNS+
Sbjct: 68  AACTRDNLNLQEELSEAYRIKSQLADLHNAEVAKNKEAEKQLKFFQGCVASAFAERDNSI 127

Query: 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191
           MEAEKAKEKEELMSQKFNEFQ RLEEL+S+ +E K+QN  L+ +L KQEE NES K+V N
Sbjct: 128 MEAEKAKEKEELMSQKFNEFQKRLEELTSDCLEQKRQNEALQINLAKQEEQNESLKKVAN 187

Query: 192 KFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVEN 250
           KFYEIRQ SLE  E  SWEDKC  LL DS EMWS+ND STS YISALE+ELE+ R S +N
Sbjct: 188 KFYEIRQHSLEGFEDASWEDKCTWLLHDSKEMWSYNDASTSNYISALEEELEQVRKSADN 247

Query: 251 LQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRS 310
           LQSKLR+GLEIENHLKK VRELEKK I  DK + N IA LR  HS+ R H++N L EG+ 
Sbjct: 248 LQSKLRVGLEIENHLKKQVRELEKKQIQLDKMVMNGIAGLRHYHSEHRGHIMNLLNEGKL 307

Query: 311 HIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPA 370
           H+KS  D++EEK        + QN    QR   L+E ECRDVHI+ND  + L+S+     
Sbjct: 308 HMKSTMDMLEEKIGETYGS-KEQNLRPSQRVIDLEENECRDVHISNDIGSALISEEVKHG 366

Query: 371 YCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQ 430
             D   + +  +SE LAQ LQEKVAALLLLSQQEERHLLERNVN+ LQKK+EELQRNL Q
Sbjct: 367 LHDSGDNEEENSSEALAQVLQEKVAALLLLSQQEERHLLERNVNAVLQKKMEELQRNLLQ 426

Query: 431 VTTEKVKALMELAQLKQDYQLLQEYDSY 458
           VT EKVKAL+ELAQLKQ YQ L E  S+
Sbjct: 427 VTNEKVKALVELAQLKQAYQQLHEKISH 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495819|ref|XP_003516769.1| PREDICTED: uncharacterized protein LOC100775191 [Glycine max]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 290/445 (65%), Positives = 347/445 (77%), Gaps = 3/445 (0%)

Query: 11  ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQK 70
           + E+L+ARIQQLE ERDELRKDIEQLCMQQAGP YLAVATRMHFQRTAGLEQEIE LK+K
Sbjct: 6   DDESLLARIQQLEQERDELRKDIEQLCMQQAGPGYLAVATRMHFQRTAGLEQEIESLKKK 65

Query: 71  IAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
           +AAC REN NLQEELSEAYRIKGQLADLH+AEV KNMEAEKQVKFFQGC+AAAF+ERD +
Sbjct: 66  LAACTRENLNLQEELSEAYRIKGQLADLHSAEVSKNMEAEKQVKFFQGCVAAAFSERDQA 125

Query: 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190
           ++EAEKAKEKEE M Q+ N    R+EEL+S+ ++LK+ N  L+ D     + NE+  +VI
Sbjct: 126 IIEAEKAKEKEETMLQQINGIHKRVEELTSDCLKLKEFNDALQIDQAVHMKQNENCMKVI 185

Query: 191 NKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVE 249
           NKF++IRQ SL+  E  SW +KCACLL DS E+WSFND STSKYISALE++LE+ R+S++
Sbjct: 186 NKFFQIRQHSLKEFEDMSWNEKCACLLGDSEEVWSFNDASTSKYISALEEQLERLRNSMD 245

Query: 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
            LQ+KLR+GLEIENHLKK V  LE K I  DK I N+IA+L+  HS+ R  ++N L +G 
Sbjct: 246 YLQNKLRVGLEIENHLKKRVNALENKQISMDKVIENSIADLKHYHSKCRDEIMNLLGDGE 305

Query: 310 SHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDP 369
           S IKSI + I+EK    D  +      T QR+ + +E EC D+HI+  A     S+RN P
Sbjct: 306 SSIKSIINAIDEKVWSFD--LSTVPNLTPQRDAEPEESECADLHISPQAKPVSESKRNSP 363

Query: 370 AYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLF 429
           +    +A  KG+ S+ LA ALQEKVAALLLLSQQEERHLLERNVNSALQ K EELQRNL 
Sbjct: 364 SALSADAGVKGDPSDVLAMALQEKVAALLLLSQQEERHLLERNVNSALQGKTEELQRNLL 423

Query: 430 QVTTEKVKALMELAQLKQDYQLLQE 454
           QVT EKVKALMELAQLKQ++QLL E
Sbjct: 424 QVTNEKVKALMELAQLKQEHQLLLE 448

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479244|ref|NP_001154517.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251226|gb|AEC06320.1| myosin heavy chain-related protein [Arabidopsis thaliana]

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 278/460 (60%), Positives = 342/460 (74%), Gaps = 9/460 (1%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           MD N  E EN    L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA L
Sbjct: 1   MDLNLDENEN----LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASL 56

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +
Sbjct: 57  EQEIESLKLKLAACTREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSV 116

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           AAAF+ERD SVMEAEKA+E  E+MSQK +E + RLEELSS+ +  K+ N TL+ DL K E
Sbjct: 117 AAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLE 176

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE 
Sbjct: 177 EQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEG 236

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR 
Sbjct: 237 ELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRA 296

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDA 358
           +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    
Sbjct: 297 YIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVV 353

Query: 359 DTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQ 418
           ++  V++  + +   I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+ALQ
Sbjct: 354 ESCQVTKLAEASIAKIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNAALQ 413

Query: 419 KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDSY 458
           +K++ELQRN+ QVT EKV+ LMELAQL+Q+YQ L+E+ ++
Sbjct: 414 QKVDELQRNILQVTNEKVRTLMELAQLRQEYQSLREHGTF 453

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831932|ref|XP_002883848.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329688|gb|EFH60107.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/455 (60%), Positives = 341/455 (74%), Gaps = 7/455 (1%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           MD N  E EN    L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VATRMHFQRTA L
Sbjct: 1   MDLNLDENEN----LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVATRMHFQRTASL 56

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +
Sbjct: 57  EQEIESLKLKLAACTREKHNLQEELAEAYRVKTQLADLHAGEVAKNLEAEKQVRFFQGSV 116

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           AAAF+ERD SVMEAEKA+E  E+MSQK  E + RLEELSS+ +  K+ N TL+ DL K E
Sbjct: 117 AAAFSERDKSVMEAEKAEENAEMMSQKLGEIEMRLEELSSDCLVQKRLNDTLQADLAKLE 176

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E   ++ +VI KF +IR+ SL E LE S  +KCA LL D  E W+FND STS+Y++ALE 
Sbjct: 177 EQTRTYAQVIEKFDDIRKASLCESLEMSLHNKCASLLDDPIESWTFNDPSTSEYVAALEG 236

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D+ I N I ++R  HSQLR 
Sbjct: 237 ELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADRLIVNGITDIRHHHSQLRA 296

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDAD 359
           ++++ L E   +IKSIS  +EEK +     IR  N    Q + K DE ECRDVHI    +
Sbjct: 297 YIIDLLTEEGLYIKSISKNVEEKLKLHSSEIR--NVVPLQHDFKPDESECRDVHITTVVE 354

Query: 360 TNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQK 419
           +  V++  + +  +I A+ +G+ SE LAQALQEKV ALLLLSQQEERHL E NVN+ALQ+
Sbjct: 355 SCQVTKLAEASIANIMAESRGDTSEALAQALQEKVGALLLLSQQEERHLHEENVNAALQQ 414

Query: 420 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454
           K++ELQRN+ QVT EKV+ LMELAQL+Q+YQ L++
Sbjct: 415 KVDELQRNILQVTNEKVRTLMELAQLRQEYQSLRD 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225987|ref|NP_179075.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|334184229|ref|NP_001189526.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|3810592|gb|AAC69374.1| unknown protein [Arabidopsis thaliana] gi|330251225|gb|AEC06319.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251227|gb|AEC06321.1| myosin heavy chain-related protein [Arabidopsis thaliana]

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 277/456 (60%), Positives = 339/456 (74%), Gaps = 9/456 (1%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           MD N  E EN    L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA L
Sbjct: 1   MDLNLDENEN----LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASL 56

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +
Sbjct: 57  EQEIESLKLKLAACTREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSV 116

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           AAAF+ERD SVMEAEKA+E  E+MSQK +E + RLEELSS+ +  K+ N TL+ DL K E
Sbjct: 117 AAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLE 176

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE 
Sbjct: 177 EQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEG 236

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR 
Sbjct: 237 ELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRA 296

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDA 358
           +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    
Sbjct: 297 YIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVV 353

Query: 359 DTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQ 418
           ++  V++  + +   I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+ALQ
Sbjct: 354 ESCQVTKLAEASIAKIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNAALQ 413

Query: 419 KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454
           +K++ELQRN+ QVT EKV+ LMELAQL+Q+YQ L++
Sbjct: 414 QKVDELQRNILQVTNEKVRTLMELAQLRQEYQSLRD 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480651|ref|XP_003610611.1| hypothetical protein MTR_5g005010 [Medicago truncatula] gi|355511946|gb|AES93569.1| hypothetical protein MTR_5g005010 [Medicago truncatula]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/460 (59%), Positives = 345/460 (75%), Gaps = 4/460 (0%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           M E   E  N  E+L+ RI+QLEHERDELRKDIEQLCMQQAGP+YL+VATRMHFQRTAGL
Sbjct: 1   MAEPEAEDMNHHESLLGRIRQLEHERDELRKDIEQLCMQQAGPAYLSVATRMHFQRTAGL 60

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEI+ L+ K+AA   +  NLQ++LS+AYRIK QLADLHAAE+ KN+EAEKQ+KFFQGC+
Sbjct: 61  EQEIQTLQNKLAASTTDTLNLQDQLSQAYRIKAQLADLHAAELSKNIEAEKQLKFFQGCV 120

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           A AF+ERD++++EAEKAKE E+ MSQ+ + F  R+EEL+S   + K+ N  L+ D     
Sbjct: 121 ATAFSERDHAIIEAEKAKEMEDAMSQQIHGFLKRIEELTSVCCKQKELNYALQSDQAMYI 180

Query: 181 ELNESFKEVINKFYEIRQQS-LEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E NE FK+VINKF++IRQ S  E  +TSW+ K  CLL DS E+WSFND STSKYISALE+
Sbjct: 181 EQNEKFKKVINKFFQIRQYSQKECDDTSWDVKSTCLLDDSEELWSFNDASTSKYISALEE 240

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           +L+K  +SV+ LQSKLR+GLEIENHLKK +  +E+  I+ +K I N IA+L+  H + R 
Sbjct: 241 QLDKVNNSVDCLQSKLRVGLEIENHLKKRINLMEQNQIYMNKVIENGIADLKHHHFKYRD 300

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDAD 359
           H++N L +G S IKS  +VI+E+ +  ++ I  +    +QR+ + +E ECRD HI+    
Sbjct: 301 HIMNLLRDGESTIKSTINVIDERIRRFNENI--EPNLVHQRDKEREENECRDAHISPQDK 358

Query: 360 TNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQK 419
           T   S+        ++AD + ++S+ LA AL EKV ALLLLSQQEERHLLERNVNSALQ 
Sbjct: 359 TLSQSKSTGLDSLAVKADGQCDSSDALAMALHEKVDALLLLSQQEERHLLERNVNSALQI 418

Query: 420 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDSYF 459
           K EELQRNL QVT EKVKALMELAQLKQ++QLL EYD YF
Sbjct: 419 KTEELQRNLLQVTNEKVKALMELAQLKQEHQLLLEYD-YF 457

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438615|ref|XP_004137083.1| PREDICTED: uncharacterized protein LOC101211967 [Cucumis sativus]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/447 (61%), Positives = 339/447 (75%), Gaps = 17/447 (3%)

Query: 11  ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQK 70
           ++E L+ RIQQLE+ERDELRKDIEQLCMQQAGP YL+VATRMHFQRTAGLEQEIE LK+K
Sbjct: 7   DNEHLLTRIQQLEYERDELRKDIEQLCMQQAGPGYLSVATRMHFQRTAGLEQEIENLKKK 66

Query: 71  IAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
            AAC REN NLQEEL+EAYRIK QLADLH++EV KN+E+EKQ+KFFQGC+A AFAERD+S
Sbjct: 67  FAACTRENHNLQEELAEAYRIKSQLADLHSSEVAKNLESEKQLKFFQGCVATAFAERDHS 126

Query: 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190
           +MEAEKAKEKEE MSQK  E + RLEELSS+ + L++ N TLR +L KQEE NE  K+VI
Sbjct: 127 IMEAEKAKEKEETMSQKLKEVENRLEELSSDCLNLRETNDTLRINLAKQEEWNEVSKQVI 186

Query: 191 NKFYEIRQQSLE-VLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVE 249
           NKFYEIRQ SLE  ++TSW++KC CLL DS+EMWSFND+ST +YI++LE+ LE  + +V+
Sbjct: 187 NKFYEIRQNSLEGFMDTSWDEKCQCLLHDSSEMWSFNDSSTFRYINSLEEGLETMKKTVD 246

Query: 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
           NLQ+KLRMG+EIE HLK  V +LE K+IH D  + + I+     +SQ R H++N LE+  
Sbjct: 247 NLQNKLRMGVEIEKHLKGKVHDLELKLIHMDDMVKSKISGFCQNYSQYRDHILNLLEKEM 306

Query: 310 SHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKL--DEFECRDVHINNDADTNLVSQRN 367
           S++ S    IEEK      V  G      +   K+  +E + ++ H++ +A   +     
Sbjct: 307 SNMHSTIGEIEEKI-----VQYGWGVQQLKDSEKVLKEENDSQEGHLSTNAKMEI----- 356

Query: 368 DPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRN 427
                D  AD   EA   LA ALQEKV+ALLLLSQQEERH+LER+VN+ALQ+K EELQRN
Sbjct: 357 -HGLPDSVADGNAEA---LALALQEKVSALLLLSQQEERHMLERDVNAALQRKTEELQRN 412

Query: 428 LFQVTTEKVKALMELAQLKQDYQLLQE 454
           L QVT EKVKALMELAQ+KQ+ QLL+E
Sbjct: 413 LLQVTHEKVKALMELAQVKQELQLLKE 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479020|ref|XP_004155483.1| PREDICTED: uncharacterized LOC101211967 [Cucumis sativus]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 271/446 (60%), Positives = 341/446 (76%), Gaps = 15/446 (3%)

Query: 11  ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQK 70
           ++E L+ RIQQLE+ERDELRKDIEQLCMQQAGP YL+VATRMHFQRTAGLEQEIE LK+K
Sbjct: 7   DNEHLLTRIQQLEYERDELRKDIEQLCMQQAGPGYLSVATRMHFQRTAGLEQEIENLKKK 66

Query: 71  IAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
            AAC REN NLQEEL+EAYRIK QLADLH++EV KN+E+EKQ+KFFQGC+A AFAERD+S
Sbjct: 67  FAACTRENHNLQEELAEAYRIKSQLADLHSSEVAKNLESEKQLKFFQGCVATAFAERDHS 126

Query: 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190
           +MEAEKAKEKEE MSQK  E + RLEELSS+ + L++ N TLR +L KQEE NE  K+VI
Sbjct: 127 IMEAEKAKEKEETMSQKLKEVENRLEELSSDCLNLRETNDTLRINLAKQEEWNEVSKQVI 186

Query: 191 NKFYEIRQQSLE-VLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVE 249
           NKFYEIRQ SL+  ++TSW++KC CLL DS+EMWSFND+ST +YI++LE+ LE  + +V+
Sbjct: 187 NKFYEIRQNSLDGFMDTSWDEKCQCLLHDSSEMWSFNDSSTFRYINSLEEGLETMKKTVD 246

Query: 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
           NLQ+KLRMG+EIE HLK  V +LE K+IH D  + + I+     +SQ R H++N LE+  
Sbjct: 247 NLQNKLRMGVEIEKHLKGKVHDLELKLIHMDDMVKSKISGFCQNYSQYRDHILNLLEKEM 306

Query: 310 SHIKSISDVIEEK-TQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRND 368
           S++ S     EEK  Q+   V + +++    +E    E + ++ H++ +A   +      
Sbjct: 307 SNMHSTIGEFEEKIVQYGWGVQKLKDSEKVLKE----ENDSQEGHLSTNAKMEI------ 356

Query: 369 PAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNL 428
               D  AD   EA   LA ALQEKV+ALLLLSQQEERH+LER+VN+ALQ+K EELQRNL
Sbjct: 357 HGLPDSVADGNAEA---LALALQEKVSALLLLSQQEERHMLERDVNAALQRKTEELQRNL 413

Query: 429 FQVTTEKVKALMELAQLKQDYQLLQE 454
            QVT EKVKALMELAQ+KQ+ QLL+E
Sbjct: 414 LQVTHEKVKALMELAQVKQELQLLKE 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
TAIR|locus:2064247	652	MEE13 "AT2G14680" [Arabidopsis	0.954	0.676	0.594	3.6e-128
UNIPROTKB|F1N1F8	3077	CENPF "Uncharacterized protein	0.880	0.132	0.204	1.1e-10
UNIPROTKB|F1PRS3	1869	CENPF "Uncharacterized protein	0.794	0.196	0.222	3.5e-09
UNIPROTKB|F1NNI6	3103	LOC100858793 "Uncharacterized	0.904	0.134	0.215	1e-08
UNIPROTKB|P49454	3210	CENPF "Centromere protein F" [	0.880	0.126	0.221	1.3e-08
UNIPROTKB|F1NDQ5	1891	CCDC88A "Uncharacterized prote	0.924	0.225	0.215	1.6e-08
UNIPROTKB|F8W7S5	751	RRBP1 "Ribosome-binding protei	0.803	0.494	0.254	1.8e-08
UNIPROTKB|Q02224	2701	CENPE "Centromere-associated p	0.865	0.148	0.205	2.4e-08
ZFIN|ZDB-GENE-041111-270	1398	eea1 "early endosome antigen 1	0.911	0.301	0.233	2.4e-08
UNIPROTKB|Q9P2E9	1410	RRBP1 "Ribosome-binding protei	0.803	0.263	0.254	4e-08

TAIR|locus:2064247 MEE13 "AT2G14680" [Arabidopsis thaliana (taxid:3702)]

 Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
 Identities = 265/446 (59%), Positives = 328/446 (73%)

Query:    15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74
             L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA LEQEIE LK K+AAC
Sbjct:    11 LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASLEQEIESLKLKLAAC 70

Query:    75 ARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMXX 134
              RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +AAAF+ERD SVM  
Sbjct:    71 TREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSVAAAFSERDKSVMEA 130

Query:   135 XXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFY 194
                     +MSQK +E + RLEELSS+ +  K+ N TL+ DL K EE   ++  VI KFY
Sbjct:   131 EKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLEEQTRTYAGVIEKFY 190

Query:   195 EIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253
             +IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE EL K +++V+NLQS
Sbjct:   191 DIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEGELGKVKNTVDNLQS 250

Query:   254 KLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK 313
             KLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR +++  L E   +IK
Sbjct:   251 KLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRAYIIALLNEEGLYIK 310

Query:   314 SISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYC 372
             SIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    ++  V++  + +  
Sbjct:   311 SISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVVESCQVTKLAEASIA 367

Query:   373 DIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVT 432
              I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+ALQ+K++ELQRN+ QVT
Sbjct:   368 KIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNAALQQKVDELQRNILQVT 427

Query:   433 TEKVKALMELAQLKQDYQLLQEYDSY 458
              EKV+ LMELAQL+Q+YQ L+E+ ++
Sbjct:   428 NEKVRTLMELAQLRQEYQSLREHGTF 453

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

UNIPROTKB|F1N1F8 CENPF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 94/460 (20%), Positives = 203/460 (44%)

Query:    14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73
             +L  ++ + EHE+  + K +E   M++   +    +T+    +   L + IE L+ +I A
Sbjct:  2037 SLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQ---LRKGIEKLRVRIEA 2093

Query:    74 CARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMX 133
               ++  ++ E+L E+ R    L D      ++ +E E Q+   +        + +N    
Sbjct:  2094 DEKKQLHVSEKLKESERRNDSLQDK-----VETLERELQMA--EENQELVILDAENCKAE 2146

Query:   134 XXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK- 192
                      LM+++  + +  L  + SE   L KQ    +    + + L  S K ++ + 
Sbjct:  2147 VETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEK 2206

Query:   193 ------FYEIRQQSLEVLETSWEDKCA--CLLLDSAEMWSFNDTSTSKYISALEDELEKT 244
                     E  + ++E+L+T   +       L D  E W   + S    + +   E+++ 
Sbjct:  2207 EREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQS----LDSPAQEVQQL 2262

Query:   245 RSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIA----ELRLCHSQLRVH 300
             R+++E    KL++ L+I+   +  + E  K+  H   F+ + +     EL+L   + + H
Sbjct:  2263 RNNIE----KLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLS-GENQEH 2317

Query:   301 VVNSLEEGRSHIKSISDVIEEKTQHC-----DDV-IRGQNTGTYQRETKLDEFECRDVHI 354
             V    E+ ++ ++++   +E+  Q+      D V IR +      +E + ++    ++  
Sbjct:  2318 VTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDL-TKELQKEQSRVSELET 2376

Query:   355 NNDADTNLVSQRN-DPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNV 413
              N +  NL+ ++  +      E+    E  +T  + L EK+AAL   + QE R + E+++
Sbjct:  2377 LNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELNEKMAALG--NDQETRKVKEQSL 2434

Query:   414 NSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 453
             +S    +++ L+        EK + L +L   K +Y +LQ
Sbjct:  2435 SS----QVDSLEH-------EKAQLLQDLDDAKSNYMILQ 2463

GO:0051310 "metaphase plate congression" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016202 "regulation of striated muscle tissue development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

UNIPROTKB|F1PRS3 CENPF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 90/404 (22%), Positives = 189/404 (46%)

Query:    61 EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEV---IKNMEAEKQVKFFQ 117
             ++ I  L+++++    E + L  +L    + K +L DL + ++   I+ +E+ +      
Sbjct:   702 QKAITCLEEELSVVTSERNQLHGQLDTLSKEKKEL-DLMSEKMKQKIQELESREDECLHP 760

Query:   118 GCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATL-RFDL 176
               MA A   +D   +          L+     E  TRL+E   +++E   Q  +L + +L
Sbjct:   761 SDMAGAEV-KDKMQLVQRLSSDVTQLL-----EDNTRLQE-QLQSLEKDSQALSLVKSEL 813

Query:   177 EKQ-EELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYIS 235
             E Q E+LN+  KE +++  E  Q  L   E+  E       L+ A M        +  +S
Sbjct:   814 EIQIEQLNKE-KESLSRESESLQARLH--ESEHEKLTVAKALEGALM---EKGEVAVRLS 867

Query:   236 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHS 295
             + ++E+ + R  +E L+ ++    + + H+ + +RE E+K       I N   EL++   
Sbjct:   868 STQEEVHQLRKGIEKLRIRIEADEKKQLHVLEKLRESERKADALQDKIENLERELQMSEE 927

Query:   296 QLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHIN 355
                + ++++ E  ++ ++++   +E  T+   D+     T  +++E  + + + +   ++
Sbjct:   928 NQELVILDA-ENSKAEVETLKTQMELTTKSLKDLESDLVTVRFEKENLIKQLQDKQGQVS 986

Query:   356 NDADTNLVS---QRNDPAYCDIEADRKGEAS----ETLAQALQEKVAALLLLSQQEERHL 408
              + DT L S   Q  +     IE   +  A+     T  + L E++AAL     QE + +
Sbjct:   987 -ELDTLLSSFKGQLEEKEREKIEMKEESRAALEMLRTQLKELNEEIAALC--HDQEIQKV 1043

Query:   409 LERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLL 452
              E++++  +Q+ I +L+ N     TEK+KA +E A  K+  ++L
Sbjct:  1044 KEQSLDPLVQE-IHQLRNN-----TEKLKARLE-ADEKEQLRVL 1080

GO:0045502 "dynein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|F1NNI6 LOC100858793 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 98/454 (21%), Positives = 199/454 (43%)

Query:    15 LMARIQQLEHERDELRKDIEQLCMQQAGPS--YLAVATRMHFQRTAGLEQEIEILKQKIA 72
             L  +IQ L  E  +LR+ +++   +        L V    + +  + L+ ++  L +K  
Sbjct:   480 LQNQIQILSSETSQLRQTMQEKENEYKSEESDILRVQLSENMEIISDLQCQLRNLSEK-- 537

Query:    73 ACARENSNLQE---EL--SEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER 127
               A+E+S LQ+   EL  SEA ++K Q+ +L   +V  N++ E Q +           E+
Sbjct:   538 -AAQESSILQQKQLELLTSEAEQLKKQVVELEEVKV--NLQKEVQHQ------KDVIVEK 588

Query:   128 DNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 187
             D S+            + +   E     EE  +   +L+ Q   L  +L+K +EL +  K
Sbjct:   589 DQSLSESESSFIENKTLLKALKEKAQEDEEKVNLISQLQSQVHVLTQELQKSKELVQE-K 647

Query:   188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSS 247
             E  N F  + Q+ +E  +     +    L  + ++ + N +  S  I  L++ELEK+ ++
Sbjct:   648 E--NAFLSL-QEKIEA-QYELRTELTAALNKNLQLANKNMSVLSNEIEILKEELEKSGAA 703

Query:   248 VENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE 307
             ++NL  + ++ L+ E+ L++S+ E E K +     +  A  E++    QL   + N ++ 
Sbjct:   704 MKNLTKEFQLELKFES-LEQSLLESENKWVTK---LDRATLEIKNLTEQLSC-LENEMKS 758

Query:   308 GRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEF---ECRDVHINNDADTNLVS 364
               S I+S+   ++       D    Q      +  KL+E        +H++     +L+ 
Sbjct:   759 KDSKIQSLQKELDHFQLQLTDEKNRQIQFLQDKINKLEEIVRTSQEKLHVDGKKVASLLE 818

Query:   365 Q--RNDPAYCDI--EADRKGEASETLAQALQEKVAALLLLSQQEERHLLE-RNVNSALQK 419
             +  R D    D+  + +++ +    L+Q ++EK   +  + +     +L      + L  
Sbjct:   819 EMGRKDQLIEDLTSQLNQQKDLISGLSQQMKEKDCFVTQIMESLSSEMLNFSEERNTLSS 878

Query:   420 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 453
             K+ +L+        E  + L EL   K++ +  Q
Sbjct:   879 KLHDLESAHNHSVGELNRVLQELEDCKKELECSQ 912

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|P49454 CENPF "Centromere protein F" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 102/460 (22%), Positives = 202/460 (43%)

Query:    14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73
             +L AR+ + ++E+  + K +E   +++ G   L +++    +    L + IE L+ +I A
Sbjct:  2170 SLQARLSESDYEKLNVSKALEAALVEK-GEFALRLSSTQ--EEVHQLRRGIEKLRVRIEA 2226

Query:    74 CARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMX 133
               ++  ++ E+L E  R    L D      ++N+E E Q+   +        + +NS   
Sbjct:  2227 DEKKQLHIAEKLKERERENDSLKDK-----VENLERELQMS--EENQELVILDAENSKAE 2279

Query:   134 XXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 193
                       M++    F+  L  L SE   L KQ    +  L + ++L  SFK ++ + 
Sbjct:  2280 VETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFKSLLEEK 2339

Query:   194 ----YEIRQQS---LEVLETSWED--KCACLLLDSAEMWSFNDTSTSKYISALEDELEKT 244
                  +I+++S   +E+L+   ++  +    L    E+    + S    I   E+E  + 
Sbjct:  2340 EQAEIQIKEESKTAVEMLQNQLKELNEAVAALCGDQEIMKATEQSLDPPI---EEE-HQL 2395

Query:   245 RSSVENLQSKLRMGLEIENHLKKSV-RELEKKIIHSDKF---ISNAIAELRLCHSQLRVH 300
             R+S+E    KLR  LE +   +  V ++L++   H+D     + N   EL +  +  + H
Sbjct:  2396 RNSIE----KLRARLEADEKKQLCVLQQLKESEHHADLLKGRVENLERELEIARTN-QEH 2450

Query:   301 VVNSLEEGRSHIKSISDVIEEKTQHCD----DV--IRGQNTGTYQRETKLDEFECRDVHI 354
                  E  +  ++++   IE  TQ       DV  IR +       E + ++    ++ I
Sbjct:  2451 AALEAENSKGEVETLKAKIEGMTQSLRGLELDVVTIRSEKENL-TNELQKEQERISELEI 2509

Query:   355 NNDADTNLVSQRN-DPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNV 413
              N +  N++ ++  +      ++    E  +T  + L E+VAAL   + QE     E+N+
Sbjct:  2510 INSSFENILQEKEQEKVQMKEKSSTAMEMLQTQLKELNERVAALH--NDQEACKAKEQNL 2567

Query:   414 NSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 453
             +S    ++E L+        EK + L  L + K +Y +LQ
Sbjct:  2568 SS----QVECLE-------LEKAQLLQGLDEAKNNYIVLQ 2596

GO:0006260 "DNA replication" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0000922 "spindle pole" evidence=IDA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IMP

GO:0000087 "M phase of mitotic cell cycle" evidence=IMP;IDA;TAS

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IDA;TAS

GO:0000278 "mitotic cell cycle" evidence=IMP;TAS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0007059 "chromosome segregation" evidence=IMP;NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0051382 "kinetochore assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007094 "mitotic spindle assembly checkpoint" evidence=NAS

GO:0051310 "metaphase plate congression" evidence=IDA

GO:0045502 "dynein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=NAS

GO:0042493 "response to drug" evidence=NAS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0000785 "chromatin" evidence=NAS

GO:0003682 "chromatin binding" evidence=NAS

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0016363 "nuclear matrix" evidence=IDA

GO:0015031 "protein transport" evidence=IMP;IDA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016202 "regulation of striated muscle tissue development" evidence=ISS

GO:0005819 "spindle" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F1NDQ5 CCDC88A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 100/464 (21%), Positives = 201/464 (43%)

Query:    15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKI--A 72
             L A++ ++E ERD  RK IE+L  +      L +A +     +  L  E+E + +    +
Sbjct:   386 LKAKLHEMEMERDMDRKKIEELMEENMA---LEMAQKQSMDESLHLGWELEQINRFTDHS 442

Query:    73 ACARENSNLQ-EELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSV 131
               + ++  L+  EL+ +  +K +  +    + ++ + +                E++N  
Sbjct:   443 EVSHKSLGLEVTELTSSRLLKLEKENQSLLKTVEELRSTMDDSVGGNSSRIVKMEKENQR 502

Query:   132 MXXXXXXXXXXLMSQK--FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189
             +          ++ +K    + Q   ++L  E  +L+K+  TLR +LE+Q +L E   E 
Sbjct:   503 LNKKIEELEKEIVQEKQSLQDNQNLSKDLMKEKEQLEKKFETLRENLERQIKLLEQENER 562

Query:   190 INK-FYEIRQQSLEVLETSWED--KCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRS 246
              N+    +RQ+S    E   ++  K   +L +S +        TS  ++ LE E+++ R 
Sbjct:   563 SNQTIASLRQRSQISAEAQMKEIEKENKILHESIK-------ETSSKLNKLEFEIKQVRK 615

Query:   247 SVENLQSKLRMGLEIEN---HLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVN 303
              +E+ + K     E+EN   HL+K    L+KKI +        I  L   +S L +    
Sbjct:   616 EMEHYKEKAERAEELENELHHLEKENELLQKKIANLS-ITCEKIEALEKENSDLDIEN-R 673

Query:   304 SLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQR--ETKLDEFECRDVHINN---DA 358
              L++    +K++S  +E   +  +  +  +N    +R   +K    +   + + N   ++
Sbjct:   674 KLKKTLDSLKNLSFQLESLEKE-NSQLDEENLELRRRIESSKCTSIKMAQLQLENKELES 732

Query:   359 DTNLVSQRNDPAYCDIEADRKGEAS----ETLAQALQEKVAALLLLSQQEERHLLE-RNV 413
             +   + +  +      +   + E S    +T  Q LQ+ +       QQ E  L +  + 
Sbjct:   733 EKEQLKKSLELMKASFKKSERLEVSYQGLDTENQRLQKALENSNKKIQQLEGELQDLESE 792

Query:   414 NSALQKKIEEL---QRNLFQVTTEKVKALMELAQLKQDYQLLQE 454
             N  LQK +EEL    + L Q+  E      E +QL++D + L++
Sbjct:   793 NQTLQKNLEELVISSKRLEQLEKENKLLEQETSQLEKDKKQLEK 836

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0010975 "regulation of neuron projection development" evidence=IEA

GO:0016044 "cellular membrane organization" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031929 "TOR signaling cascade" evidence=IEA

GO:0032148 "activation of protein kinase B activity" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043422 "protein kinase B binding" evidence=IEA

UNIPROTKB|F8W7S5 RRBP1 "Ribosome-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 102/401 (25%), Positives = 173/401 (43%)

Query:    60 LEQEIEIL--KQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEA-EKQVKFF 116
             LE++ ++L  +Q+ AA A+  S L+E   E    K + A    A+V K + A E+++   
Sbjct:    43 LEEKEKLLATEQEDAAVAK--SKLRELNKEMAAEKAKAA-AGEAKVKKQLVAREQEITAV 99

Query:   117 QGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKK--QNATLRF 174
             Q  M A++ E    V           L  Q  N   T+L  L  EN  L+     AT + 
Sbjct:   100 QARMQASYREHVKEVQQLQGKIRT--LQEQLENGPNTQLARLQQENSILRDALNQATSQV 157

Query:   175 D------LEK-QEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFND 227
             +      L K ++EL++  KE++ K   +RQ   E    + E K A       ++ + + 
Sbjct:   158 ESKQNAELAKLRQELSKVSKELVEKSEAVRQD--EQQRKALEAKAAAFEKQVLQLQASHR 215

Query:   228 TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAI 287
              S       L DE+ +     ++  + LR   E     ++ + EL  K+  S+  + +  
Sbjct:   216 ESEEALQKRL-DEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKC 274

Query:   288 AELRLCHSQLR-VHVVNSLEEGRSHIKSISDVIEE-KTQHCDDVIRGQNTGTYQRETKLD 345
              EL   H QL+     NS    R  I+SI  ++E  + +   DV   Q     Q++T+L 
Sbjct:   275 EELSGLHGQLQEARAENSQLTER--IRSIEALLEAGQARDAQDVQASQAEAD-QQQTRLK 331

Query:   346 EFECRDVHINNDA-DTNLVSQRNDPAYCDI-EADRKG-EASETLAQALQEKVAALLLLSQ 402
             E E +   +  +A +     ++      D+ E + K  EA  T  QA +EK+ +L    +
Sbjct:   332 ELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKE 391

Query:   403 QEERHL--LERNVNSALQKKIEELQRNLFQVTTEKVKALME 441
             + E+ L  +E     AL   + EL     Q  TE ++ L E
Sbjct:   392 ESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKE 432

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 94/457 (20%), Positives = 211/457 (46%)

Query:    20 QQLEHERDELR---KDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAR 76
             +  E ERD LR   ++IE   +Q      L +A  +H +     ++ I+ L++ ++    
Sbjct:  1210 KSFETERDHLRGYIREIEATGLQTK--EELKIA-HIHLKEH---QETIDELRRSVSEKTA 1263

Query:    77 ENSNLQEELSEAYRIKGQLADLHAA-EVIKNME--AEKQVKFFQ-GCMAAAFAERDNSVM 132
             +  N Q+      +++ ++  LH   E++ N++  +E Q    +   +      +D++ +
Sbjct:  1264 QIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTL 1323

Query:   133 XXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE-KQEELNESFKEVIN 191
                        +++KF E Q  ++ L+ E   LK    T++  LE K ++L E  +E + 
Sbjct:  1324 ARIEMERLR--LNEKFQESQEEIKSLTKERDNLK----TIKEALEVKHDQLKEHIRETLA 1377

Query:   192 KFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST----------SKYISALEDEL 241
             K  E + +  + L    +D     ++   E +   D++           SK +    DE+
Sbjct:  1378 KIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEM 1437

Query:   242 EKTRSSVENLQSKLRMGLEIEN-HLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVH 300
             +      ++LQ +L+  L+ E+  LK++++E+  K + +++       EL++ H  L+  
Sbjct:  1438 KSVAKEKDDLQ-RLQEVLQSESDQLKENIKEIVAKHLETEE-------ELKVAHCCLKEQ 1489

Query:   301 --VVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVH--INN 356
                +N L    S  ++    I+++ +  +D ++ +    Y++E + +  +  +V   +N 
Sbjct:  1490 EETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNE 1549

Query:   357 DADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSA 416
                     +  D A   IE+ +  E +  L ++ QE++   +++ ++EE     + V  A
Sbjct:  1550 LKQFKEHRKAKDSALQSIES-KMLELTNRLQES-QEEIQ--IMIKEKEEM----KRVQEA 1601

Query:   417 LQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 453
             LQ + ++L+ N     T+++ A M+ +Q K+ YQ L+
Sbjct:  1602 LQIERDQLKEN-----TKEIVAKMKESQEKE-YQFLK 1632

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=TAS

GO:0000776 "kinetochore" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IMP

GO:0000779 "condensed chromosome, centromeric region" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051382 "kinetochore assembly" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=IMP

GO:0005874 "microtubule" evidence=IDA

GO:0043515 "kinetochore binding" evidence=IDA

GO:0005634 "nucleus" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0007080 "mitotic metaphase plate congression" evidence=TAS

GO:0000089 "mitotic metaphase" evidence=TAS

GO:0007079 "mitotic chromosome movement towards spindle pole" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

ZFIN|ZDB-GENE-041111-270 eea1 "early endosome antigen 1" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 110/472 (23%), Positives = 216/472 (45%)

Query:    14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73
             AL  ++ + E E  EL    E+L  +QA  S  ++   +H Q+   L++    +    AA
Sbjct:   293 ALSEKLSRKEKENQELE---ERLGHEQA--SKKSLQANLH-QKELELQESRARVSSGEAA 346

Query:    74 CARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAE-KQVKFFQGCMAAAFAERDNSVM 132
              +R  + L E   EA R++ +L +L   +  + ++AE KQ++  +        ++ + + 
Sbjct:   347 LSRAQAELTERGEEAARLRRELGELEKNQ--QELKAERKQLQQQREDKENQGLQQQSEIS 404

Query:   133 XXXXXXXXXXLMSQKFNEFQTRLEE---LSSENIELKKQNAT-LRFDLEK-QEELNESFK 187
                          ++  E Q RL+E   LS E ++ ++Q A  L+  L + +EEL ES  
Sbjct:   405 QLHAKLLEA---ERQVGELQGRLKEQRQLSGEKLKDREQQAADLQLKLSRLEEELKESST 461

Query:   188 EVINKFYEI-----RQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELE 242
             +  +  +++     + Q L+ L+ S   K      D  ++         K I  LE  L+
Sbjct:   462 KSTDLQHQLDKSKQQHQELQTLQQSTNGKLREAQNDLEQVLRQIGDKDQK-IQNLEALLQ 520

Query:   243 KTRSSV-------ENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHS 295
             K++ SV       E+L +K++ G E E  L   ++E    +      +++ +      H 
Sbjct:   521 KSKESVSQLETEREDLCAKIQAG-EGEAALLNQLQEKNHSLQEQITQLTDKLKNQSESHK 579

Query:   296 QLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTG-TYQRE--TKLD-EFECR- 350
             Q + ++   ++E ++H++S  D    + Q  +  +   NT  T  RE   +LD + + + 
Sbjct:   580 QAQDNLHEQVQEQKTHLRSAQD----RCQGLETTVTELNTQLTESREKIAQLDTQLKAKT 635

Query:   351 DVHINNDADTNLVSQRND-PAYCDIEA----DRKGEASETLAQALQEKVAALLLLSQQEE 405
             ++ ++ +A  N  +QR D  ++ +       D++ E S+  AQ L+E+  A  L  +QE+
Sbjct:   636 EMLLSAEAAKN--AQRADLESHLETAQNALQDKQQELSKVQAQ-LEEQ--ARRLTEKQEQ 690

Query:   406 RHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEYDS 457
                LE  +  +  K +   QR +  + T+  KA +EL +L+   +  Q+  S
Sbjct:   691 CSQLENGLKDSRDKLMTAEQR-IETLQTQTKKAEVELTELRSGREQAQKEQS 741

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9P2E9 RRBP1 "Ribosome-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 102/401 (25%), Positives = 173/401 (43%)

Query:    60 LEQEIEIL--KQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEA-EKQVKFF 116
             LE++ ++L  +Q+ AA A+  S L+E   E    K + A    A+V K + A E+++   
Sbjct:   702 LEEKEKLLATEQEDAAVAK--SKLRELNKEMAAEKAKAA-AGEAKVKKQLVAREQEITAV 758

Query:   117 QGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKK--QNATLRF 174
             Q  M A++ E    V           L  Q  N   T+L  L  EN  L+     AT + 
Sbjct:   759 QARMQASYREHVKEVQQLQGKIRT--LQEQLENGPNTQLARLQQENSILRDALNQATSQV 816

Query:   175 D------LEK-QEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFND 227
             +      L K ++EL++  KE++ K   +RQ   E    + E K A       ++ + + 
Sbjct:   817 ESKQNAELAKLRQELSKVSKELVEKSEAVRQD--EQQRKALEAKAAAFEKQVLQLQASHR 874

Query:   228 TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAI 287
              S       L DE+ +     ++  + LR   E     ++ + EL  K+  S+  + +  
Sbjct:   875 ESEEALQKRL-DEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKC 933

Query:   288 AELRLCHSQLR-VHVVNSLEEGRSHIKSISDVIEE-KTQHCDDVIRGQNTGTYQRETKLD 345
              EL   H QL+     NS    R  I+SI  ++E  + +   DV   Q     Q++T+L 
Sbjct:   934 EELSGLHGQLQEARAENSQLTER--IRSIEALLEAGQARDAQDVQASQAEAD-QQQTRLK 990

Query:   346 EFECRDVHINNDA-DTNLVSQRNDPAYCDI-EADRKG-EASETLAQALQEKVAALLLLSQ 402
             E E +   +  +A +     ++      D+ E + K  EA  T  QA +EK+ +L    +
Sbjct:   991 ELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKE 1050

Query:   403 QEERHL--LERNVNSALQKKIEELQRNLFQVTTEKVKALME 441
             + E+ L  +E     AL   + EL     Q  TE ++ L E
Sbjct:  1051 ESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKE 1091

GO:0015031 "protein transport" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=NAS

GO:0007165 "signal transduction" evidence=NAS

GO:0004872 "receptor activity" evidence=TAS

GO:0005840 "ribosome" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	462
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 8/207 (3%)

Query: 2   DENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH--FQRTAG 59
                  E E E L +R+++LE E +EL +++E+L  +        +   +    +  A 
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLE-----ELEEELESLEEALAK 776

Query: 60  LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGC 119
           L++EIE L++K  A   E   L+EEL EA R    L     +   +    E++++  +  
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 120 MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179
           +     + D    E E+ +++ E + ++  E +   EEL  E  EL+++   L  +L + 
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896

Query: 180 EELNESFKEVINKFYEIRQQSLEVLET 206
           E      KE I K    R + LE    
Sbjct: 897 ESELAELKEEIEK-LRERLEELEAKLE 922

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 56/277 (20%), Positives = 115/277 (41%), Gaps = 10/277 (3%)

Query: 4   NSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQE 63
             +E E + E L  +I +LE    ELRK++E+L   +     L        ++ + L ++
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEEL---EEELEQLRKELEELSRQISALRKD 734

Query: 64  IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAA 123
           +  L+ ++       + L +EL+E      +L +       +  EAE +++  +  +   
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183
             E        ++ + +  L++++    + RLE L       +++   L   +E+  E  
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 184 ESFKEVINKFYEIR---QQSLEVLETSWEDKCACLLLDSAEMWSFNDT--STSKYISALE 238
           ES    I +  E+    +  LE L          L L  +E+   ++         S L 
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 239 DELEKTRSSVENLQSKLRMGLEIE-NHLKKSVRELEK 274
            ELE+ R  +  L+ +L  GLE+  ++L++ + E   
Sbjct: 915 RELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYS 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 36/178 (20%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           ++   +E+    + L     +L+ E ++LR ++E+          +              
Sbjct: 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEE----------VDKEFAETRDELKDY 390

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAA-----EVIKNMEAEKQVKF 115
            +++E LK++I    RE   LQEEL    R+  +LADL+AA       I  +E EK+ K 
Sbjct: 391 REKLEKLKREINELKRELDRLQEELQ---RLSEELADLNAAIAGIEAKINELEEEKEDK- 446

Query: 116 FQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 173
               +     + +    +  K +++   + ++++  +  L +L  E  E + Q     
Sbjct: 447 -ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 62/289 (21%), Positives = 117/289 (40%), Gaps = 52/289 (17%)

Query: 3   ENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62
           E  +E + E E     I++L+ E +ELR+++E+L  +                    LE 
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI----------EELEG 302

Query: 63  EIEILKQKIAACARENSNLQEELSEAY-RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA 121
           EI +L++++     E   L+E L E   +I+    +L   E +   E E+ +        
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL-EELEQLLA------- 354

Query: 122 AAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181
                        E  +E EE +S    E +   E L  E  EL+ + A +R +LE+ + 
Sbjct: 355 ----------ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 182 LNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDEL 241
             ES +E + +  E  +   E L+    +                       +  L+ EL
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEAE-----------------------LEELQTEL 441

Query: 242 EKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAEL 290
           E+    +E L+ +L    +    L++ + EL++++   +K +S+  A L
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	462
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.38
PRK09039	343	hypothetical protein; Validated	97.27
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.78
PHA02562	562	46 endonuclease subunit; Provisional	96.43
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.18
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.72
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	93.7
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	93.69
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	93.6
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.62
PRK10884	206	SH3 domain-containing protein; Provisional	92.12
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.04
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	92.02
PRK04863	1486	mukB cell division protein MukB; Provisional	91.87
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.82
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.71
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	91.45
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	91.16
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.64
PRK02224	880	chromosome segregation protein; Provisional	90.43
PRK09039	343	hypothetical protein; Validated	89.63
PRK02224	880	chromosome segregation protein; Provisional	89.57
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	88.12
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	85.96
PRK11637	428	AmiB activator; Provisional	85.88
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.46
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	85.26
PRK03918	880	chromosome segregation protein; Provisional	84.17
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	84.13
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	83.91
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.5
PRK03918	880	chromosome segregation protein; Provisional	82.48
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	81.99
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	81.05
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	81.04
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	80.56
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	80.42

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.38  E-value=0.13  Score=48.79  Aligned_cols=117  Identities=17%  Similarity=0.238  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 012498           12 SEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR   90 (462)
Q Consensus        12 ~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaG-pgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYR   90 (462)
                      -++-+.||..||.+...|...|..+---.+. ||-+          -...+.+|..|+.++..++.++-.|+-++..+..
T Consensus        13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~----------~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~   82 (312)
T PF00038_consen   13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRI----------KEMYEEELRELRRQIDDLSKEKARLELEIDNLKE   82 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---------HHH----------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCccc----------ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence            4677899999999999999999999876422 2211          2456888999999999999999999999998877


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhH
Q 012498           91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK  138 (462)
Q Consensus        91 iK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFAERD~slmEaEkaK  138 (462)
                      --..+-.-|..+...+..+|.++.=+..-+-.+.+.|...=-+++-.+
T Consensus        83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~  130 (312)
T PF00038_consen   83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK  130 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence            666666667788889999999988888777777777766544444444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK09039 hypothetical protein; Validated

Probab=97.27  E-value=0.056  Score=54.08  Aligned_cols=115  Identities=21%  Similarity=0.231  Sum_probs=65.8

Q ss_pred             CchHHHhhHH-----------------HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 012498           43 PSYLAVATRM-----------------HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK  105 (462)
Q Consensus        43 pgyl~vATRM-----------------~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~K  105 (462)
                      ||||++-|-+                 +++-..++++++..|..+++.                     |+++-+-+.+.
T Consensus        17 pg~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~---------------------L~e~L~le~~~   75 (343)
T PRK09039         17 PGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAE---------------------LADLLSLERQG   75 (343)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence            9999987754                 356677777777777776655                     55555555555


Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHh
Q 012498          106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES  185 (462)
Q Consensus       106 n~e~EkqvkFfQs~vA~AFAERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~  185 (462)
                      +..++..+.=.+.....|=++|+.  .|  ..-.   .......+.+.|+..++..+..++..-...+.+...+..|.+.
T Consensus        76 ~~~l~~~l~~l~~~l~~a~~~r~~--Le--~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~a  148 (343)
T PRK09039         76 NQDLQDSVANLRASLSAAEAERSR--LQ--ALLA---ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAA  148 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH--HH--HHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            555555555555555544444431  11  1000   0011233556666666666666666666666666666666663

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.78  E-value=0.65  Score=51.91  Aligned_cols=115  Identities=27%  Similarity=0.400  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHH---HhhhhhHH----HHHHHHHHH-------HHhhhhhcch
Q 012498           16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHF---QRTAGLEQ----EIEILKQKI-------AACARENSNL   81 (462)
Q Consensus        16 ~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~---qRta~LEQ----eiE~Lkkkl-------~~c~ren~nL   81 (462)
                      .+++..++.|.|-|++++|.. +.-.|+.--++-| .|+   -|..++..    ++..++.++       ...-.+.++|
T Consensus         2 q~ql~~~q~E~e~L~~ele~~-~~~l~~~~~~i~~-fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~L   79 (775)
T PF10174_consen    2 QAQLERLQRENERLRRELERK-QSKLGSSMNSIKT-FWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQAL   79 (775)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhHhc-ccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence            468889999999999999987 4444544444433 222   12222222    233344444       4444455677


Q ss_pred             HHHHHHH----HHHHHHHHHHHH-HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHH
Q 012498           82 QEELSEA----YRIKGQLADLHA-AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE  139 (462)
Q Consensus        82 QEELsEA----YRiK~qLadLh~-ae~~Kn~e~EkqvkFfQs~vA~AFAERD~slmEaEkaKE  139 (462)
                      |+|| .+    ||+..++-.-.+ .+-...  +++    =+|-+.+..||||....|.+....
T Consensus        80 qeEL-r~q~e~~rL~~~~e~~~~e~e~l~~--ld~----~~~q~~rl~~E~er~~~El~~lr~  135 (775)
T PF10174_consen   80 QEEL-RAQRELNRLQQELEKAQYEFESLQE--LDK----AQEQFERLQAERERLQRELERLRK  135 (775)
T ss_pred             HHHH-HHhhHHHHHHHHhhhcccccchhhh--hhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888 55    555555443311 111111  222    367788889999999999888773

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.43  E-value=0.84  Score=46.42  Aligned_cols=75  Identities=15%  Similarity=0.158  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 012498           15 LMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY   89 (462)
Q Consensus        15 l~~RI~qLe~ERdEL~KDIEqLCMQQaG-pgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAY   89 (462)
                      +..++.+++.+.+.|+..|+.+=-+-++ +.++.....-....++.++.+++++..+....-.+-.+|++++.+.+
T Consensus       172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~  247 (562)
T PHA02562        172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV  247 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666666666666666444443 45555555555566777777777777777777677777777776664

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.18  E-value=11  Score=46.30  Aligned_cols=182  Identities=22%  Similarity=0.256  Sum_probs=114.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH-HHH
Q 012498           58 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-AEK  136 (462)
Q Consensus        58 a~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFAERD~slmE-aEk  136 (462)
                      .+++.+|+.++.++..-+|.+++|...+..+-+=+..|-+.+--+...-.++++++.==-+-++++-+.=+..+.. .|.
T Consensus      1297 ~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~ee 1376 (1930)
T KOG0161|consen 1297 QALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEE 1376 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999988887776666666666666666666666655444455544444444443 344


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccch---hh
Q 012498          137 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK---CA  213 (462)
Q Consensus       137 aKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K---cs  213 (462)
                      +.|.-...-..+.+.+++++.+...+....+..-.||.++..+.--++....++. |.+..+...+-.=..|..+   -+
T Consensus      1377 lee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~-~le~k~k~f~k~l~e~k~~~e~l~ 1455 (1930)
T KOG0161|consen 1377 LEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA-ALEKKQKRFEKLLAEWKKKLEKLQ 1455 (1930)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455567888899999999999999888888877777665544432222221 2222222221111344444   45


Q ss_pred             hhccccccccccCCcchHHHHHHHHHH
Q 012498          214 CLLLDSAEMWSFNDTSTSKYISALEDE  240 (462)
Q Consensus       214 ~LL~Ds~~~Wsfn~tstskyisaLEeE  240 (462)
                      ..++.+...|.=-+|+..++-.+|++-
T Consensus      1456 ~Eld~aq~e~r~~~tel~kl~~~lee~ 1482 (1930)
T KOG0161|consen 1456 AELDAAQRELRQLSTELQKLKNALEEL 1482 (1930)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            556666666766667666665555544

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.72  E-value=10  Score=43.51  Aligned_cols=49  Identities=8%  Similarity=0.128  Sum_probs=25.7

Q ss_pred             HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 012498          259 LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE  307 (462)
Q Consensus       259 LeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~e  307 (462)
                      ++-...+.++.+.|..+..-+++=...-...+......-|...|.....
T Consensus       969 iee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~ 1017 (1163)
T COG1196         969 IEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDK 1017 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556667777777766665554444444444444444444444443333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=93.70  E-value=13  Score=40.72  Aligned_cols=88  Identities=16%  Similarity=0.243  Sum_probs=62.6

Q ss_pred             HHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcchhhhhhHHH
Q 012498          239 DELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDV  318 (462)
Q Consensus       239 eE~e~lr~~i~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~  318 (462)
                      +++..++.++..+...+|-==+.-+-|.+.+..|-|.  ..-......|.++-+---+|+++|.+||.|-+. |..=||.
T Consensus       447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~-lQkeiN~  523 (594)
T PF05667_consen  447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE-LQKEINS  523 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            5666777777777777776655555565555555544  344555667888888888999999999999875 5667899


Q ss_pred             HHhhhcccccc
Q 012498          319 IEEKTQHCDDV  329 (462)
Q Consensus       319 ieekl~~~~n~  329 (462)
                      +..||.-.+.|
T Consensus       524 l~gkL~RtF~v  534 (594)
T PF05667_consen  524 LTGKLDRTFTV  534 (594)
T ss_pred             HHHHHHhHHHH
Confidence            99999444455

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=93.69  E-value=12  Score=40.48  Aligned_cols=19  Identities=11%  Similarity=0.198  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHhHHHH
Q 012498          233 YISALEDELEKTRSSVENL  251 (462)
Q Consensus       233 yisaLEeE~e~lr~~i~~L  251 (462)
                      .|..|+.+++.|.+.|+.+
T Consensus       966 ~~~~l~~~i~~lg~aiee~  984 (1179)
T TIGR02168       966 DEEEARRRLKRLENKIKEL  984 (1179)
T ss_pred             CHHHHHHHHHHHHHHHHHc
Confidence            3455555555555544443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=93.60  E-value=13  Score=40.58  Aligned_cols=20  Identities=15%  Similarity=0.468  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHh
Q 012498          234 ISALEDELEKTRSSVENLQS  253 (462)
Q Consensus       234 isaLEeE~e~lr~~i~~LQs  253 (462)
                      ++.++.+++.+.+.|+++-.
T Consensus       953 ~~~l~~~l~~l~~~i~~l~~  972 (1164)
T TIGR02169       953 LEDVQAELQRVEEEIRALEP  972 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHcCC
Confidence            45777888888888877665

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=92.62  E-value=25  Score=41.01  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=26.2

Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 012498           54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL   98 (462)
Q Consensus        54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadL   98 (462)
                      -.+.+.++..++.++.....|..+-..+++.+.+.+.+...+..+
T Consensus       223 r~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l  267 (1311)
T TIGR00606       223 RDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL  267 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555666666666666666666666666666555554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.12  E-value=2.6  Score=40.25  Aligned_cols=72  Identities=21%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 012498           11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR   90 (462)
Q Consensus        11 ~~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYR   90 (462)
                      ...++..|+..|+.|-.+|+..+..+=-+             +.+|++.|.+.+....+.+.....+|..|.++|..   
T Consensus        87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~---  150 (206)
T PRK10884         87 TTPSLRTRVPDLENQVKTLTDKLNNIDNT-------------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV---  150 (206)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            34567788899999999988877774322             67999999999999999999999999999999987   


Q ss_pred             HHHHHHHH
Q 012498           91 IKGQLADL   98 (462)
Q Consensus        91 iK~qLadL   98 (462)
                      .+..+..|
T Consensus       151 ~~~~~~~l  158 (206)
T PRK10884        151 AQKKVDAA  158 (206)
T ss_pred             HHHHHHHH
Confidence            35555444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.04  E-value=13  Score=40.82  Aligned_cols=173  Identities=19%  Similarity=0.278  Sum_probs=92.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 012498           11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR   90 (462)
Q Consensus        11 ~~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYR   90 (462)
                      .....+.||+.||+.--+|+.-+...= ....|+-.+..-.=+-.++..|.++++.|..++.+-+++|..|-.-..   .
T Consensus        44 Ek~~~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~---E  119 (617)
T PF15070_consen   44 EKEHDISRVQELERSLSELKNQMAEPP-PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQ---E  119 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccC-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            356677888888887777765443311 222222111111123446777999999999999999999987733222   3


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhH
Q 012498           91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNA  170 (462)
Q Consensus        91 iK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFAERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~  170 (462)
                      -+..|++|-..--....+.+-    -++-+|+.=++|    .-+-+|-..-..+-+++.+++.+.-.++.+..   ++..
T Consensus       120 qEerL~ELE~~le~~~e~~~D----~~kLLe~lqsdk----~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~---elt~  188 (617)
T PF15070_consen  120 QEERLAELEEELERLQEQQED----RQKLLEQLQSDK----ATASRALSQNRELKEQLAELQDAFVKLTNENM---ELTS  188 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcccc----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh---HhhH
Confidence            356666662210000111111    112222221111    12333433334444555555555544433221   3457


Q ss_pred             hHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 012498          171 TLRFDLEKQEELNESFKEVINKFYEIRQ  198 (462)
Q Consensus       171 aLQ~dl~~~~eq~e~~~kVI~KFyeiR~  198 (462)
                      +||.+.-+-++-...+-.+=.|...++-
T Consensus       189 ~lq~Eq~~~keL~~kl~~l~~~l~~~~e  216 (617)
T PF15070_consen  189 ALQSEQHVKKELQKKLGELQEKLHNLKE  216 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888887777777777677777776664

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=92.02  E-value=21  Score=38.79  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012498           13 EALMARIQQLEHERDELRKDIEQLC   37 (462)
Q Consensus        13 e~l~~RI~qLe~ERdEL~KDIEqLC   37 (462)
                      ..+...+..++.+.+++++.++.+-
T Consensus       673 ~~l~~e~~~l~~~~~~l~~~l~~~~  697 (1179)
T TIGR02168       673 LERRREIEELEEKIEELEEKIAELE  697 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666665555543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.87  E-value=36  Score=41.13  Aligned_cols=45  Identities=22%  Similarity=0.366  Sum_probs=31.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 012498           51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL   98 (462)
Q Consensus        51 RM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadL   98 (462)
                      |.++.-++|..+......++|...-..-..+.+++.   -|+.++..|
T Consensus       282 R~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~---ELe~rL~kL  326 (1486)
T PRK04863        282 RVHLEEALELRRELYTSRRQLAAEQYRLVEMARELA---ELNEAESDL  326 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            677888888888777777777776666666666663   456666655

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.82  E-value=2.2  Score=39.21  Aligned_cols=42  Identities=38%  Similarity=0.366  Sum_probs=2.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH
Q 012498           80 NLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA  121 (462)
Q Consensus        80 nLQEELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA  121 (462)
                      .||+||+++||.+++++.--...-.++.++++...=-++.++
T Consensus        78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~  119 (194)
T PF08614_consen   78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLA  119 (194)
T ss_dssp             ------------------------------------HHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhHHHHHHHHH
Confidence            489999999999999996655444555555554443333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.71  E-value=13  Score=35.63  Aligned_cols=194  Identities=16%  Similarity=0.145  Sum_probs=96.6

Q ss_pred             HHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHH
Q 012498          113 VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK  192 (462)
Q Consensus       113 vkFfQs~vA~AFAERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~K  192 (462)
                      |.-...--|+.-.++|+.-.+++..+.+=+.-.+.....+.-+..+.+.+++..-....|+..+..+++......++-. 
T Consensus        63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he-  141 (312)
T PF00038_consen   63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE-  141 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh-
Confidence            3333444467777778877887777766666666667777777777777777777777777777777777763333322 


Q ss_pred             HHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHH------------HhHHHHHhhhhhh--
Q 012498          193 FYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTR------------SSVENLQSKLRMG--  258 (462)
Q Consensus       193 FyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr------------~~i~~LQskLR~G--  258 (462)
                              -+-.++.-.-.    -..+.+++++.++..+..|..+-.+.+...            .++..++.....+  
T Consensus       142 --------eEi~~L~~~~~----~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~  209 (312)
T PF00038_consen  142 --------EEIEELREQIQ----SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSE  209 (312)
T ss_dssp             --------HHHHTTSTT--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------hhhhhhhhccc----cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccccccccc
Confidence                    11111111111    233445555555555666655544433221            3333443333221  


Q ss_pred             ----HHHHH-HhHHhHHHHHHhhhh---hHHHHHHHHHHHHHhhhHHHHHHHHhhhhcchhhhhhHHHH
Q 012498          259 ----LEIEN-HLKKSVRELEKKIIH---SDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVI  319 (462)
Q Consensus       259 ----LeIen-hLkk~vr~Lekkqi~---~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~i  319 (462)
                          .--|. .+++.+..|+....-   -...+.+.|.++.+.|...+......+..=...|..+-..+
T Consensus       210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~  278 (312)
T PF00038_consen  210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM  278 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence                11111 234444444433321   24566778888888888777665555444444444444444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=91.45  E-value=25  Score=38.54  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=18.2

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 012498           56 RTAGLEQEIEILKQKIAACARENSNLQEELSEA   88 (462)
Q Consensus        56 Rta~LEQeiE~Lkkkl~~c~ren~nLQEELsEA   88 (462)
                      +...+..+++.+..++.....+-..+.+++.+.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~  263 (1164)
T TIGR02169       231 EKEALERQKEAIERQLASLEEELEKLTEEISEL  263 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666666665555555555555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=91.16  E-value=31  Score=39.12  Aligned_cols=174  Identities=21%  Similarity=0.263  Sum_probs=103.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCc-hHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 012498           11 ESEALMARIQQLEHERDELRKDIEQLCM--QQAGPS-YLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE   87 (462)
Q Consensus        11 ~~e~l~~RI~qLe~ERdEL~KDIEqLCM--QQaGpg-yl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsE   87 (462)
                      ..+.+-.||.-++.++|...-.|+.|=-  |-.||+ +-...+.-...|.++++..+..|+..+.---.++.-+.++|..
T Consensus       136 ~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~  215 (775)
T PF10174_consen  136 TLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHR  215 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            4677888899999999999999988754  777844 5566666667799999999988888777777777666666665


Q ss_pred             HHHHHHH------HHHHHH------HHHHhhH-HHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHH---------
Q 012498           88 AYRIKGQ------LADLHA------AEVIKNM-EAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMS---------  145 (462)
Q Consensus        88 AYRiK~q------LadLh~------ae~~Kn~-e~EkqvkFfQs~vA~AFAERD~slmEaEkaKE~Ee~m~---------  145 (462)
                      .|....-      +-.+.-      +++.++. .+|-.+.-.++.++.+=++||--.-++|--+-.-..|-         
T Consensus       216 ~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~e  295 (775)
T PF10174_consen  216 RLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLE  295 (775)
T ss_pred             HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5543211      111111      2333332 25677777777777777788776333333222222222         


Q ss_pred             -----HHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhH
Q 012498          146 -----QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE  184 (462)
Q Consensus       146 -----qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e  184 (462)
                           +.+..++.|++.+.+.-.+.+.=-+.|+.++.....+.+
T Consensus       296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~  339 (775)
T PF10174_consen  296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAE  339 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 223334444444444444444444444444444444444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.64  E-value=7.3  Score=34.74  Aligned_cols=101  Identities=23%  Similarity=0.300  Sum_probs=71.0

Q ss_pred             CCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH
Q 012498           42 GPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA  121 (462)
Q Consensus        42 Gpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA  121 (462)
                      |...+....||.++ ...+|-|+-.||..++...++...+.+|+....+--..+..    .......+++          
T Consensus        11 ~~~~~~~ve~L~s~-lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~----~~~~~~~L~~----------   75 (120)
T PF12325_consen   11 GGPSVQLVERLQSQ-LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA----LKKEVEELEQ----------   75 (120)
T ss_pred             CCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----------
Confidence            33445666777654 66788899999999999999999999998886655444422    2233333333          


Q ss_pred             HHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 012498          122 AAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ  168 (462)
Q Consensus       122 ~AFAERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~  168 (462)
                                 +......+-.++++-+-+-.++++|++.++.+.|.+
T Consensus        76 -----------el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m  111 (120)
T PF12325_consen   76 -----------ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM  111 (120)
T ss_pred             -----------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence                       334455777888888888888889998888888854

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK02224 chromosome segregation protein; Provisional

Probab=90.43  E-value=31  Score=37.75  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHhhhhhh
Q 012498          233 YISALEDELEKTRSSVENLQSKLRMG  258 (462)
Q Consensus       233 yisaLEeE~e~lr~~i~~LQskLR~G  258 (462)
                      -++.|+.+++.++..++.+.+.+...
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~~~  508 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVEAE  508 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666555555543

>PRK09039 hypothetical protein; Validated

Probab=89.63  E-value=25  Score=35.60  Aligned_cols=59  Identities=25%  Similarity=0.317  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 012498           15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQE   83 (462)
Q Consensus        15 l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQE   83 (462)
                      |...|..++.|-++|..-|-.          ++..--|=-.|++.|+++|..++.++....+.+.-|+.
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~----------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~  102 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAE----------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA  102 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556788888899999988876          77778888899999999999999988876666554444

>PRK02224 chromosome segregation protein; Provisional

Probab=89.57  E-value=36  Score=37.25  Aligned_cols=24  Identities=33%  Similarity=0.538  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHhhhh
Q 012498          233 YISALEDELEKTRSSVENLQSKLR  256 (462)
Q Consensus       233 yisaLEeE~e~lr~~i~~LQskLR  256 (462)
                      -|..++.+...+.+.++.+..++.
T Consensus       476 ~~~~~~~~~~~le~~l~~~~~~~e  499 (880)
T PRK02224        476 RVEELEAELEDLEEEVEEVEERLE  499 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666666666666554

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=88.12  E-value=1.9  Score=46.71  Aligned_cols=124  Identities=21%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             HHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhccccccccccCCcch
Q 012498          151 FQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST  230 (462)
Q Consensus       151 ~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tst  230 (462)
                      ..+++..+++.+....+-+..|+.++..++.+.+..        .+|+     .--...-|+=.|=+.|...|-+.   -
T Consensus       501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~--------~L~g-----~~~~~~trVL~lr~NP~~~~~~~---k  564 (722)
T PF05557_consen  501 LSEELNELQKEIEELERENERLRQELEELESELEKL--------TLQG-----EFNPSKTRVLHLRDNPTSKAEQI---K  564 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCT-------BTTTEEEEEESS-HHHHHHHH---H
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcc-----ccCCCCceeeeeCCCcHHHHHHH---H
Confidence            344555555555555555666666666665555411        0111     00122335555556665555443   2


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhh--------hHHHH----HHhHHhHHHHHHhhhhhHHHHHHHHHHH
Q 012498          231 SKYISALEDELEKTRSSVENLQSKLRM--------GLEIE----NHLKKSVRELEKKIIHSDKFISNAIAEL  290 (462)
Q Consensus       231 skyisaLEeE~e~lr~~i~~LQskLR~--------GLeIe----nhLkk~vr~Lekkqi~~dk~i~ngi~~l  290 (462)
                      ..-+.+|..|++.|++.+..|...-..        |+..-    +-|+..+..++|+..-+-.++...+.++
T Consensus       565 ~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eF  636 (722)
T PF05557_consen  565 KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEF  636 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345778888888888888666532211        12221    2256666666666665655555555544

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=85.96  E-value=1e+02  Score=38.56  Aligned_cols=180  Identities=24%  Similarity=0.278  Sum_probs=97.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhcCCchHHHhhHHHH-----HhhhhhHHHHHHHHHHHHHhhhhh
Q 012498           11 ESEALMARIQQLEHERDELRKDIEQ-------LCMQQAGPSYLAVATRMHF-----QRTAGLEQEIEILKQKIAACAREN   78 (462)
Q Consensus        11 ~~e~l~~RI~qLe~ERdEL~KDIEq-------LCMQQaGpgyl~vATRM~~-----qRta~LEQeiE~Lkkkl~~c~ren   78 (462)
                      ..-.+...+.+++||.+.|++=+|-       |=-+-+-..--++.+|+-+     +|+..++-....+..++.++....
T Consensus      1316 ~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~ 1395 (1930)
T KOG0161|consen 1316 EKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQI 1395 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3456778899999999988875442       1112222333344555544     344444444333333333322111


Q ss_pred             cchHHHHHHHHHHHHH----HHHHH---HHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHH
Q 012498           79 SNLQEELSEAYRIKGQ----LADLH---AAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEF  151 (462)
Q Consensus        79 ~nLQEELsEAYRiK~q----LadLh---~ae~~Kn~e~EkqvkFfQs~vA~AFAERD~slmEaEkaKE~Ee~m~qk~~~~  151 (462)
                      -.+.---..-=+.|..    +.|+-   +.-.+....+|++.+=|.+-+|.-=-..|...-|-+-+..-...-..++..+
T Consensus      1396 e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl 1475 (1930)
T KOG0161|consen 1396 EAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKL 1475 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            1110000000011222    12221   1233445677888887777766544444444444444444444444677777


Q ss_pred             HHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHH
Q 012498          152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI  190 (462)
Q Consensus       152 ~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI  190 (462)
                      ..+++|...++....+.|..|+.++..++.+....-+.+
T Consensus      1476 ~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v 1514 (1930)
T KOG0161|consen 1476 KNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRV 1514 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888999999999999888888877444433

>PRK11637 AmiB activator; Provisional

Probab=85.88  E-value=44  Score=34.13  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=20.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 012498           52 MHFQRTAGLEQEIEILKQKIAACARENSNLQEELS   86 (462)
Q Consensus        52 M~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELs   86 (462)
                      +++.-++.++++++.+++++...-.+-..++.++.
T Consensus        37 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~   71 (428)
T PRK11637         37 AFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRA   71 (428)
T ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444566777788887776655444444444444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.46  E-value=20  Score=39.97  Aligned_cols=28  Identities=11%  Similarity=0.200  Sum_probs=24.6

Q ss_pred             hhHHHHHHHHhhhhcchhhhhhHHHHHh
Q 012498          294 HSQLRVHVVNSLEEGRSHIKSISDVIEE  321 (462)
Q Consensus       294 h~~~R~~Im~lL~ee~s~i~s~v~~iee  321 (462)
                      =..|+..|-++|.+....|+.+|+.|..
T Consensus       683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~  710 (717)
T PF10168_consen  683 SESQKRTIKEILKQQGEEIDELVKQIKN  710 (717)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568889999999999999999998864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=85.26  E-value=35  Score=32.45  Aligned_cols=51  Identities=24%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHH
Q 012498          141 EELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN  191 (462)
Q Consensus       141 Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~  191 (462)
                      -....+++.+.+.|.+.++..+....+..+.|.-+|...++....+.+-++
T Consensus       178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445666666666666666666666666666666666666655555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK03918 chromosome segregation protein; Provisional

Probab=84.17  E-value=68  Score=34.92  Aligned_cols=63  Identities=25%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 012498           15 LMARIQQLEHERDELRKDIEQL---------CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARE   77 (462)
Q Consensus        15 l~~RI~qLe~ERdEL~KDIEqL---------CMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~re   77 (462)
                      +..++.+++.+.++|.+-++.|         |-+.=||.|-.-.+-=+-++...|+.+|+.+++++..+..+
T Consensus       410 l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~  481 (880)
T PRK03918        410 ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE  481 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555444322         33444444433332334445555666666666655554443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=84.13  E-value=1.1e+02  Score=37.11  Aligned_cols=93  Identities=18%  Similarity=0.062  Sum_probs=44.8

Q ss_pred             hhhHHHHHHHHHHHHHhhh-hhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHH
Q 012498           58 AGLEQEIEILKQKIAACAR-ENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK  136 (462)
Q Consensus        58 a~LEQeiE~Lkkkl~~c~r-en~nLQEELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFAERD~slmEaEk  136 (462)
                      ++|++.|+.++.....|.| +---+|.+.+++-+.=++..+.-..--..+.+++.+++=-|-..+.++-+-+++.-+.-.
T Consensus       468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~  547 (1317)
T KOG0612|consen  468 KELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQ  547 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4555555555555555554 222244444444444344333333333444444544444455555555555555555555


Q ss_pred             hHHHHHHHHHHHHH
Q 012498          137 AKEKEELMSQKFNE  150 (462)
Q Consensus       137 aKE~Ee~m~qk~~~  150 (462)
                      +.+.+..|..++..
T Consensus       548 le~~~~d~~~e~~~  561 (1317)
T KOG0612|consen  548 LEEAELDMRAESED  561 (1317)
T ss_pred             HHHhhhhhhhhHHH
Confidence            55555555544443

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=83.91  E-value=53  Score=33.41  Aligned_cols=136  Identities=21%  Similarity=0.262  Sum_probs=72.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 012498           10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY   89 (462)
Q Consensus        10 ~~~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAY   89 (462)
                      .+.|++.+|+.-|.+|-.||..+++.+=-...+.. =..++      ...+.+.++.|+++|...     .|.+=|..  
T Consensus        87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~------~~~l~~~~~~L~~~L~~l-----~l~~~lg~--  152 (388)
T PF04912_consen   87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESD-EEKIS------PEELAQQLEELSKQLDSL-----KLEELLGE--  152 (388)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCC------hhhHHHHHHHHHHHHHHh-----hcccccch--
Confidence            45799999999999999999999998643222111 00000      122344566666666555     11111111  


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhh--hhhhHHHHHhHHHHH-HHHHHHHHHHHHHHHHhHHH
Q 012498           90 RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER--DNSVMEAEKAKEKEE-LMSQKFNEFQTRLEELSSEN  162 (462)
Q Consensus        90 RiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFAER--D~slmEaEkaKE~Ee-~m~qk~~~~~~R~~E~~s~~  162 (462)
                         .++.++..+.-.-...+-.++.-|++..+++-..-  |...-|.-...+... .-+++++.|+.|+..+++.+
T Consensus       153 ---~~~~~~~~~~~~~~~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~l  225 (388)
T PF04912_consen  153 ---ETAQDLSDPQKALSKKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESAL  225 (388)
T ss_pred             ---hhhcccccchhhHHHHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHh
Confidence               22333333344445566667777754333211111  111112111222222 24689999999999998776

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=83.50  E-value=34  Score=30.90  Aligned_cols=123  Identities=26%  Similarity=0.359  Sum_probs=83.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccch
Q 012498          132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK  211 (462)
Q Consensus       132 mEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K  211 (462)
                      +|++-|-++-+..-+++.+++.|.......+.....-|..|..++..+.++......-+.                    
T Consensus         7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le--------------------   66 (143)
T PF12718_consen    7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE--------------------   66 (143)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            455556666666668888888888888888877777777777777777776663332222                    


Q ss_pred             hhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 012498          212 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK  281 (462)
Q Consensus       212 cs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk  281 (462)
                            ++...-+=+. +..+-|.-||++++.....+.-..-+||=.=.=-.|+-|+|..||.+..-|.+
T Consensus        67 ------e~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~  129 (143)
T PF12718_consen   67 ------ESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE  129 (143)
T ss_pred             ------hHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence                  1111001111 57788999999999998888888887774322334889999999987766554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK03918 chromosome segregation protein; Provisional

Probab=82.48  E-value=80  Score=34.43  Aligned_cols=47  Identities=21%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHh
Q 012498          136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL  182 (462)
Q Consensus       136 kaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq  182 (462)
                      .+++..+....++..++.++..+++.+.+...--..++..+..+.+.
T Consensus       235 ~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~  281 (880)
T PRK03918        235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK  281 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555555555544444333333444444444333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=81.99  E-value=1.1e+02  Score=35.61  Aligned_cols=41  Identities=22%  Similarity=0.208  Sum_probs=25.4

Q ss_pred             HHHHHHH-HHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 012498          402 QQEERHL-LERNVNSALQKKIEELQRNLFQVTTEKVKALMELA  443 (462)
Q Consensus       402 QqeER~l-lE~~~n~~lq~~ieeLqrnl~QVt~EKVkaLmElA  443 (462)
                      .-++||- |.++.... ..-.+.|+.-+..++.++...+|+.-
T Consensus       974 ~~~~r~~~l~~~~~dl-~~a~~~l~~~i~~~d~~~~~~f~~~f 1015 (1163)
T COG1196         974 EVEERYEELKSQREDL-EEAKEKLLEVIEELDKEKRERFKETF 1015 (1163)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344442 33333333 33477788888888888888888863

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=81.05  E-value=61  Score=33.41  Aligned_cols=79  Identities=30%  Similarity=0.441  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHH------HhhhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 012498           12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHF------QRTAGLEQEIEILKQKIAACARENSNLQEEL   85 (462)
Q Consensus        12 ~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~------qRta~LEQeiE~Lkkkl~~c~ren~nLQEEL   85 (462)
                      .+.|-.+++.||.|-..||...-+|=.--+  .| -=--+|+.      -++|+  +.|-.|..-|+.++.+|...|+|.
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~--~~-EekEqqLv~dcv~QL~~An--~qia~LseELa~k~Ee~~rQQEEI  236 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETD--TY-EEKEQQLVLDCVKQLSEAN--QQIASLSEELARKTEENRRQQEEI  236 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHh--hc-cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999998888887766632111  00 00011111      12333  347888889999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 012498           86 SEAYRIKGQLADL   98 (462)
Q Consensus        86 sEAYRiK~qLadL   98 (462)
                      +   ++-+|++||
T Consensus       237 t---~Llsqivdl  246 (306)
T PF04849_consen  237 T---SLLSQIVDL  246 (306)
T ss_pred             H---HHHHHHHHH
Confidence            7   678899988

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=81.04  E-value=99  Score=34.54  Aligned_cols=175  Identities=25%  Similarity=0.326  Sum_probs=113.3

Q ss_pred             hHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhh
Q 012498           50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDN  129 (462)
Q Consensus        50 TRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFAERD~  129 (462)
                      +-|+.+=-.+|++.-...-+++++|...|.+|.|-++++--..+..+-|    .-+-..+..+|.=||..|-+       
T Consensus       216 ~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~esl----re~~~~L~~D~nK~~~y~~~-------  284 (581)
T KOG0995|consen  216 SELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESL----REKKARLQDDVNKFQAYVSQ-------  284 (581)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH----HHHHHHHHhHHHHHHHHHHH-------
Confidence            4455555667888777788999999999999999999888887777655    22334478899999988765       


Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccc
Q 012498          130 SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE  209 (462)
Q Consensus       130 slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~  209 (462)
                        |+     -+-..|-++++...+-+++-++.+...+..|+.|+.-++.+                         ++|..
T Consensus       285 --~~-----~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-------------------------~iS~~  332 (581)
T KOG0995|consen  285 --MK-----SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-------------------------GISGE  332 (581)
T ss_pred             --HH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------CCCHH
Confidence              43     44556778888888888887777777776666655433332                         22221


Q ss_pred             chhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHH
Q 012498          210 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNA  286 (462)
Q Consensus       210 ~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk~i~ng  286 (462)
                      +==-                ...=-..|..+++.+...+|.|++++-   +.+--.......+|++-+.+++.+++=
T Consensus       333 dve~----------------mn~Er~~l~r~l~~i~~~~d~l~k~vw---~~~l~~~~~f~~le~~~~~~~~l~~~i  390 (581)
T KOG0995|consen  333 DVER----------------MNLERNKLKRELNKIQSELDRLSKEVW---ELKLEIEDFFKELEKKFIDLNSLIRRI  390 (581)
T ss_pred             HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1000                000113466666666666676666542   222222445567888888888877763

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=80.56  E-value=90  Score=33.77  Aligned_cols=47  Identities=23%  Similarity=0.348  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHH
Q 012498           13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ   62 (462)
Q Consensus        13 e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQ   62 (462)
                      +.+.+++.+++.++++.++.+.++|   +|+++++.++-.+.+=-.-++.
T Consensus       265 ~~Le~ei~~le~e~~e~~~~l~~l~---~~~~p~~l~~~ll~~~~~q~~~  311 (650)
T TIGR03185       265 EQLERQLKEIEAARKANRAQLRELA---ADPLPLLLIPNLLDSTKAQLQK  311 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---cccCCHhhhHHHHHHHHHHHHH
Confidence            3566677777777777777665554   7788888887665543333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=80.42  E-value=1.1e+02  Score=34.52  Aligned_cols=90  Identities=27%  Similarity=0.358  Sum_probs=56.2

Q ss_pred             HHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchH
Q 012498          152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTS  231 (462)
Q Consensus       152 ~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tsts  231 (462)
                      ..|..++++.+       ..|++||...+|+..   .......++|.+.-+-     +.-+-               ...
T Consensus       544 r~r~~~lE~E~-------~~lr~elk~kee~~~---~~e~~~~~lr~~~~e~-----~~~~e---------------~L~  593 (697)
T PF09726_consen  544 RQRRRQLESEL-------KKLRRELKQKEEQIR---ELESELQELRKYEKES-----EKDTE---------------VLM  593 (697)
T ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh-----hhhHH---------------HHH
Confidence            44555555444       356677777777766   4444556677653110     00011               144


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHH
Q 012498          232 KYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEK  274 (462)
Q Consensus       232 kyisaLEeE~e~lr~~i~~LQskLR~GLeIenhLkk~vr~Lek  274 (462)
                      ..++++++.+..|.++++   ..=||=|+++-.|-.--|.||-
T Consensus       594 ~aL~amqdk~~~LE~sLs---aEtriKldLfsaLg~akrq~ei  633 (697)
T PF09726_consen  594 SALSAMQDKNQHLENSLS---AETRIKLDLFSALGDAKRQLEI  633 (697)
T ss_pred             HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999988765   4667788889988666666663

; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	462
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.4 bits (174), Expect = 3e-13
 Identities = 67/509 (13%), Positives = 145/509 (28%), Gaps = 112/509 (22%)

Query: 2   DENSKEKENESEALMAR-----IQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQR 56
           + + K+ ++  ++++++     I   +       +    L  +Q       V        
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE------ 85

Query: 57  TAGLEQEIEILKQKIAACARENSNLQEELSEA----------------YRIKGQLADLHA 100
              L    + L   I    R+ S +     E                  R++     L  
Sbjct: 86  --VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQ 142

Query: 101 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSS 160
           A  +  +   K V    G +  +      + +  +     +      F  F   L+  +S
Sbjct: 143 A--LLELRPAKNV-LIDG-VLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 161 ENIELKKQNATLRFDLEKQ-EELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLL-LD 218
               L+     L + ++      ++    +  + + I+ +   +L    +    CLL L 
Sbjct: 195 PETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCLLVLL 251

Query: 219 SAEMWSFNDTSTSKYISALEDE---LEKTR-SSVENLQSKLRMGLEIENHLKKSVRELEK 274
                   +   +K  +A       L  TR   V +  S         +H   ++   E 
Sbjct: 252 --------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 275 KIIHSDKFISNAIAELRLCHSQLRVH------VVNSLEEGRSHIKSISDVIEEKTQHCDD 328
           K +   K++     +L      L  +      +  S+ +G +   +   V  +K     +
Sbjct: 304 KSLLL-KYLDCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 329 V-IRGQNTGTYQRE-TKLDEFECRDVHINNDADTNLVSQRNDPA--YCDIEADRKGEASE 384
             +       Y++   +L  F     HI              P      I  D       
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFP-PSAHI--------------PTILLSLIWFDVIKSDVM 405

Query: 385 TLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMEL-A 443
            +   L +      L+ +Q +   +           I  +   L      K++    L  
Sbjct: 406 VVVNKLHKY----SLVEKQPKESTIS----------IPSIYLEL----KVKLENEYALHR 447

Query: 444 QLKQDYQLLQEY----------DSYFYFH 462
            +   Y + + +          D YFY H
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 8e-10
 Identities = 69/502 (13%), Positives = 141/502 (28%), Gaps = 188/502 (37%)

Query: 18  RIQQLEHERDELRKDIEQLC---------MQQAGPSYLAVAT--------RMHFQ---RT 57
           R+Q       +LR+ + +L          +  +G +++A+          +M F+     
Sbjct: 133 RLQPYL----KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 58  AGLEQEIE-ILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFF 116
                  E +L+       + + N       +  IK ++  +     ++ +   K    +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKP---Y 243

Query: 117 QGCM-----------AAAFA--------ERDNSVMEAEKAK-----------------EK 140
           + C+             AF          R   V +   A                  E 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 141 EELMSQKFNEFQTRLEELSSEN----------IELKKQNATLRFD------LEKQEELNE 184
           + L+ +  +    R ++L  E           I    ++    +D       +K   + E
Sbjct: 304 KSLLLKYLD---CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 185 SFKEVINKFYEIRQ--QSL-----------EVLETSWED-----------KCACLLLDSA 220
           S   V+    E R+    L            +L   W D           K     L   
Sbjct: 361 SSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--V 417

Query: 221 EMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL------RMGLEIEN----------- 263
           E      T     I ++  EL+    +   L   +          + ++           
Sbjct: 418 EKQPKESTI---SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 264 -----HLKKSVRE---------------LEKKIIHSDKFISNAIAELRLCHSQLRVHVVN 303
                HLK                    LE+KI H D    NA   +        ++ + 
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSI--------LNTLQ 525

Query: 304 SLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETK-LDEFECR-DVHINNDADTN 361
            L+  + +I             CD      N   Y+R    + +F  + + ++     T+
Sbjct: 526 QLKFYKPYI-------------CD------NDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 362 LV----SQRNDPAYCDIEADRK 379
           L+       ++  +   EA ++
Sbjct: 567 LLRIALMAEDEAIF--EEAHKQ 586

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 49/280 (17%), Positives = 101/280 (36%), Gaps = 27/280 (9%)

Query: 3    ENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62
            E   E E     L A+ Q+LE    E+   IE+              ++        ++Q
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE----------EERSQQLQAEKKKMQQ 955

Query: 63   EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122
            ++  L++++         LQ E   A     ++ D       +N +  K+ K  +  ++ 
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

Query: 123  A---FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179
                 AE +       K K K E      +E + RL++      EL+K    L  +    
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHE---SMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 180  EELNESFKEVINKFYEI---RQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 236
             E     +  I +       +++ L+      ED+ +       ++          +IS 
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI-----RELESHISD 1127

Query: 237  LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 276
            L+++LE  +++    + + R   ++   L+    ELE  +
Sbjct: 1128 LQEDLESEKAARNKAEKQKR---DLSEELEALKTELEDTL 1164

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 1    MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
            M++ + +   E + L  R+  L     E  +  + L   +                    
Sbjct: 995  MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK-----------------H 1037

Query: 61   EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
            E  I  L+ ++    +E  + QE      +++G+ +DLH     +  E + Q+   +  +
Sbjct: 1038 ESMISELEVRL---KKEEKSRQELEKIKRKLEGESSDLHE----QIAELQAQIAELKAQL 1090

Query: 121  AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
            A    E   ++   E    ++    +K  E ++ + +L  +    K              
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150

Query: 181  ELNESFKEVINKFYEIRQQSLEVLE 205
            E  E+ K  +    +      E+  
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 43/318 (13%), Positives = 103/318 (32%), Gaps = 18/318 (5%)

Query: 146  QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLE 205
             K    +  ++    E    K++      +L++ E+ +    E  N   E  Q   E+  
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 206  TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHL 265
             + E     L     E+         + +  +E  +E+     + LQ++ +   +    L
Sbjct: 910  EAEE-MRVRLAAKKQEL--------EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960

Query: 266  KKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHV--VNSLEEGRSHIKSISDVIEEKT 323
            ++ + E E            A  +++     + +     N L + R  ++     +    
Sbjct: 961  EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020

Query: 324  QHCDDVIRGQNTGTYQRETKLDEFECR---DVHINNDADTNLVSQRNDPAYCDIEADRKG 380
               ++  +       + E+ + E E R   +     + +        + +    +     
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080

Query: 381  EASETLAQALQEKVAALLLLSQQEERHLLERNVNSA----LQKKIEELQRNLFQVTTEKV 436
                 L   L +K   L     + E    ++N        L+  I +LQ +L      + 
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140

Query: 437  KALMELAQLKQDYQLLQE 454
            KA  +   L ++ + L+ 
Sbjct: 1141 KAEKQKRDLSEELEALKT 1158

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 3    ENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62
            +     EN+   L  +I +   E   L + +  L   +   S      R   +R    E+
Sbjct: 921  KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL---EITYSTETEKLRSDVERLRMSEE 977

Query: 63   EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122
            E +    ++ +   E + L++EL +    K  + +       +  +   ++         
Sbjct: 978  EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL--------- 1028

Query: 123  AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 177
               +  N++++ EK +    +  Q     +T  ++L  E  +L+      R   +
Sbjct: 1029 ---KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 34/197 (17%), Positives = 83/197 (42%), Gaps = 13/197 (6%)

Query: 6    KEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIE 65
                           Q  + R   ++++++L ++       A +   + +   GLE +I 
Sbjct: 879  ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE-------ARSVERYKKLHIGLENKIM 931

Query: 66   ILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA 125
             L++KI    +E  +L E+++          +   ++V +   +E++ K     + +   
Sbjct: 932  QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991

Query: 126  ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185
            E      E  + + +++ + +  ++++   E+L S   ELK+QN  L+    ++EELN  
Sbjct: 992  EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS---ELKEQNTLLK---TEKEELNRR 1045

Query: 186  FKEVINKFYEIRQQSLE 202
              +   +  E  ++ L 
Sbjct: 1046 IHDQAKEITETMEKKLV 1062

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 45/296 (15%), Positives = 93/296 (31%), Gaps = 41/296 (13%)

Query: 30   RKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILK-QKIAACARENSNLQEELSEA 88
            R     L   +A         RM+  R          +  Q +       +  Q  L E 
Sbjct: 807  RCYATFLRRTRAAIIIQKFQ-RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREH 865

Query: 89   YRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKF 148
              I  Q         +      K + + Q C     A+R     E +K K +        
Sbjct: 866  KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR-----ELKKLKIEAR------ 914

Query: 149  NEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSW 208
                  +E     +I L+ +   L+  +++Q +  +S  E +N            LE ++
Sbjct: 915  -----SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN-----------LEITY 958

Query: 209  EDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKS 268
              +   L  D   +               E+E +   + V +LQ ++    +  +  +  
Sbjct: 959  STETEKLRSDVERL------------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 269  VRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQ 324
             + +E+            ++EL+  ++ L+              K I++ +E+K  
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 30/281 (10%), Positives = 77/281 (27%), Gaps = 38/281 (13%)

Query: 2    DENSKEKENESEALMARIQQLEHERDELRKDIEQLCM------QQAGPSYLAVATRMHFQ 55
            +          +        L       R  +    +       +A    L    R ++ 
Sbjct: 1833 NPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYV 1892

Query: 56   RTAGLEQEIE----ILKQK----IAACARENSNLQ---EELSEAYRIKGQLADLHAAEVI 104
                    I     ++ +K           N  L+   +  ++   ++  LA  +    +
Sbjct: 1893 TPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDV 1952

Query: 105  KNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164
            KN +A +++K       AA  ++ ++     +   + + ++ +  +    LE+       
Sbjct: 1953 KNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPL 2012

Query: 165  -------LKKQNATLRFDLEKQEELNESFKEV--INKFYEIRQQSLEVLETSWEDKCACL 215
                       N       E    +    K +    + Y    +  E ++T         
Sbjct: 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK--VKN 2070

Query: 216  LLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR 256
             +D +             +  L  E  +     EN  +++ 
Sbjct: 2071 KVDRSI----------ALLDNLNSERGRWEQQSENFNTQMS 2101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	462
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.38
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	88.92
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	88.47
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	86.91
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	84.32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	81.26

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.38  E-value=3.5  Score=40.49  Aligned_cols=63  Identities=10%  Similarity=0.133  Sum_probs=41.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 012498          136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ  198 (462)
Q Consensus       136 kaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~  198 (462)
                      +.++..++.-+++..+++..++++..+.++|+.-..++.+.+..+.+...+...+++=|+-|.
T Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~  589 (597)
T 3oja_B          527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR  589 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            333444445566677777777888888888888888888888888888888888887777765

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=88.92  E-value=9.1  Score=31.82  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 012498           14 ALMARIQQLEHERDELRKDIEQL   36 (462)
Q Consensus        14 ~l~~RI~qLe~ERdEL~KDIEqL   36 (462)
                      .+..++..|+++.+.+...++.+
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~l   25 (284)
T 1c1g_A            3 AIKKKMQMLKLDKENALDRADEA   25 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHH
Confidence            34555666666666666555554

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=88.47  E-value=2.1  Score=35.12  Aligned_cols=64  Identities=22%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 012498           12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE   87 (462)
Q Consensus        12 ~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsE   87 (462)
                      -++.+.+|..||.+--.|..+|+++.-  .||+      ++.    .-.+.+|+.|+.++...+.+|..|.-|+..
T Consensus        18 lAsyIdKVR~LEqqN~~Le~~i~~l~~--~~~~------~~~----~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn   81 (93)
T 3s4r_A           18 FANLIDKVRFLEQQNKILLAELEQLKG--QGKS------RLG----DLYEEEMRELRRQVDQLTNDKARVEVERDN   81 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCC------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478889999999999999999999863  3443      222    125888999999999999999998887754

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=86.91  E-value=2.6  Score=46.47  Aligned_cols=8  Identities=0%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             HHHHHhhh
Q 012498          316 SDVIEEKT  323 (462)
Q Consensus       316 v~~ieekl  323 (462)
                      +..+.++|
T Consensus      1153 le~L~~~I 1160 (1184)
T 1i84_S         1153 LEALKTEL 1160 (1184)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            33333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=84.32  E-value=5  Score=36.68  Aligned_cols=77  Identities=26%  Similarity=0.323  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHH----------HHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 012498           14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH----------FQRTAGLEQEIEILKQKIAACARENSNLQE   83 (462)
Q Consensus        14 ~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~----------~qRta~LEQeiE~Lkkkl~~c~ren~nLQE   83 (462)
                      -|-.++..|+..|+.|.+|+-+|=-|      |.-=.|..          --|..+|+.|++.++..+.....||..|||
T Consensus        52 ELq~~~~~L~~~k~~Leke~~~LQa~------L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E  125 (168)
T 3o0z_A           52 ELQERNRILENSKSQTDKDYYQLQAI------LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD  125 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35578889999999999999776443      22222222          237889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 012498           84 ELSEAYRIKGQLA   96 (462)
Q Consensus        84 ELsEAYRiK~qLa   96 (462)
                      -++.-=.=|+-+.
T Consensus       126 kl~~lEKe~a~~e  138 (168)
T 3o0z_A          126 MLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh
Confidence            9987655554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.26  E-value=43  Score=32.82  Aligned_cols=38  Identities=16%  Similarity=0.268  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhh
Q 012498          146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN  183 (462)
Q Consensus       146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~  183 (462)
                      ++..+++.++++......+.++.+..+-.++..+.+.+
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45555555666555556666666666666666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00