Citrus Sinensis ID: 012499

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--

MQKREQGKSGGAAGGAATPAAKRGRPFGSTSGSSGGSGSAADSAAPTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHcccccccccEEEcccccc

ccccHccccccccccccccccccccccccccccHHHHHHHcccccccccccccEEEHHccccccccHHHEEHHcccHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHccccccEEcccccccccccHHHHHccccccccccccccccccHHHHHHcccccccccccccEcccccccccHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEccccccccEEEcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccEHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccEEEEEEEEccc

mqkreqgksggaaggaatpaakrgrpfgstsgssggsgsaadsaapttllgpslqvhssfadqNHKRIVLALQSGLKSELTWALNTLTLlsfkekddmrkdatplakipGLLDALLQVIDDWrdialpkelskgprartlgvnslvtgfgsefealgsinnafprsgvgsgssaaDSLVQKNAARVrssewwfdedglfnlddegraEKQQCAVGAsniirnfsfmpdneVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLaplldlrifsssKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRliinpdnepfllpfvpQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRViktphpvpeVCRKAAMILESLVSEPQNRVLLLAYENAFAEIlfsdgrysDTFARILYELtsrpnnkvasargiwgcg

mqkreqgksggaaggaatpaakrgrpFGSTSGSSGGSGSAADSAAPTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALpkelskgprartlGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNAARvrssewwfdEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLrviktphpvpEVCRKAAMILESLVSEPQNRVLLLAYENAFAEilfsdgrySDTFARILYeltsrpnnkvasargiwgcg

MQKREQgksggaaggaatpaakrgrpFgstsgssggsgsaadsaaPTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRsgvgsgssAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG

***************************************************************NHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSIN*************************VRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSR****V***RGIW***

*QKRE******************************************************FADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKE**KG***RTLGVNSLVTGFGSEFEALGSINNAFPRSGVGS**********************FDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHP**EVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG

********************************************APTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPR********************VRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG

*********************************************PTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGS*****************EWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		462	2.2.26 [Sep-21-2011]
Q68CP9		1835	AT-rich interactive domai	yes	no	0.616	0.155	0.256	7e-07

>sp\|Q68CP9\|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2	Back alignment and function desciption

 Score = 55.8 bits (133), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 141/332 (42%), Gaps = 47/332 (14%)

Query: 64  NHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWR 123
           ++ ++VL+L SGL +E+ +A+N  TLLS + K  M+ +  P  KI  LL A   V DD  
Sbjct: 157 DYNKLVLSLLSGLPNEVDFAINVCTLLSNESKHVMQLEKDP--KIITLLLANAGVFDD-- 212

Query: 124 DIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNA 183
                          TLG  S  T FG E++     +       +   +   D +  +N 
Sbjct: 213 ---------------TLG--SFSTVFGEEWKEKTDRDFVKFWKDIVDDNEVRDLISDRNK 255

Query: 184 ARVRSSEWW-----FDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRH 238
           +   +S  W     F       ++D       Q AV    I+RN SF   N  ++A +R 
Sbjct: 256 SHEGTSGEWIWESLFHPPRKLGINDIEGQRVLQIAV----ILRNLSFEEGNVKLLAANRT 311

Query: 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAP--LLDLRIFSSSKQSYIKITEKRAVEAI 296
           CL  +      H     +L    L+T+ N+A   LLD   F ++   +  +T+       
Sbjct: 312 CLRFLLLSAHSHFISLRQL---GLDTLGNIAAELLLDPVDFKTTHLMFHTVTK------- 361

Query: 297 MGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAV 355
              L S  +       E+LG L    DN   +  +V Q  ++ ++  ++LP      + +
Sbjct: 362 --CLMSRDRFLKMRGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVISTL 419

Query: 356 GALYNLAEV-NVDCRLKLASERWAIDRLLRVI 386
             LY L E+ +V C  K+A    +ID L+ ++
Sbjct: 420 EVLYMLTEMGDVAC-TKIAKVEKSIDMLVCLV 450

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for the stability of the SWI/SNF chromatin remodeling complex SWI/SNF-B (PBAF). May be involved in targeting the complex to different genes. May be involved in regulating transcriptional activation of cardiac genes.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		462
225432860		457	PREDICTED: AT-rich interactive domain-co	0.987	0.997	0.854	0.0
356500441		460	PREDICTED: uncharacterized protein LOC10	0.993	0.997	0.819	0.0
356536049		460	PREDICTED: uncharacterized protein LOC10	0.993	0.997	0.836	0.0
449432640		460	PREDICTED: uncharacterized protein LOC10	0.978	0.982	0.785	0.0
224099867		453	predicted protein [Populus trichocarpa]	0.974	0.993	0.831	0.0
358346987		524	hypothetical protein MTR_090s0013 [Medic	0.861	0.759	0.817	0.0
358345932		444	hypothetical protein MTR_067s0040, parti	0.865	0.900	0.810	0.0
255551987		412	conserved hypothetical protein [Ricinus	0.889	0.997	0.758	0.0
125559139		460	hypothetical protein OsI_26829 [Oryza sa	0.937	0.941	0.701	0.0
297725863		460	Os07g0609766 [Oryza sativa Japonica Grou	0.937	0.941	0.701	0.0

>gi\|225432860\|ref\|XP_002283908.1\| PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera] gi\|147794687\|emb\|CAN69148.1\| hypothetical protein VITISV_003946 [Vitis vinifera] gi\|297737139\|emb\|CBI26340.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/460 (85%), Positives = 422/460 (91%), Gaps = 4/460 (0%)

Query: 1   MQKREQGKSGGAAGGAATPAAKRGRPFGSTSGSSGGSGSAADSAAPTTLLGPSLQVHSSF 60
           MQKR+Q K GG AGGA TPAAKRGRPFGS  GS+  + +AAD+AAP+TLLGPSL VHSSF
Sbjct: 1   MQKRDQSKLGGTAGGATTPAAKRGRPFGS-GGSNSAAAAAADAAAPSTLLGPSLHVHSSF 59

Query: 61  ADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVID 120
           ADQN+KRIVLALQSGLKSEL WA+N LTLLSFKEKDD+RKDATPLAKIPGLLDALLQVID
Sbjct: 60  ADQNNKRIVLALQSGLKSELGWAINALTLLSFKEKDDVRKDATPLAKIPGLLDALLQVID 119

Query: 121 DWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQ 180
           DWRDIALPKEL+K PRAR LG NS VTGFG+E+EALGS N+    S  GSGSS +++ VQ
Sbjct: 120 DWRDIALPKELAKAPRARLLGANSFVTGFGNEYEALGS-NDVL--SHPGSGSSISEASVQ 176

Query: 181 KNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCL 240
           KN  ++R SEWW DEDGLFNLD+EGRAEKQQCAV ASNIIRNFSFMPDNEVIMAQHRHCL
Sbjct: 177 KNTTKLRPSEWWLDEDGLFNLDEEGRAEKQQCAVAASNIIRNFSFMPDNEVIMAQHRHCL 236

Query: 241 ETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGIL 300
           ETVFQCIEDH+TEDEELVTNALETIVNLAPLLDLRIFSSSK SYIKITEKRAV+AIMG+L
Sbjct: 237 ETVFQCIEDHITEDEELVTNALETIVNLAPLLDLRIFSSSKPSYIKITEKRAVQAIMGML 296

Query: 301 GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYN 360
           GS  KAWHCAAAELLGRLIINPDNEPFLLPF  QIHKRLVDL+SLPA DAQAAAVGALYN
Sbjct: 297 GSAVKAWHCAAAELLGRLIINPDNEPFLLPFASQIHKRLVDLLSLPAVDAQAAAVGALYN 356

Query: 361 LAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYE 420
           LAEVN+DCRLKLASERWAIDRLL+VIKTPHPVPEVCRKAAMI+ESLVSEPQNR  LLAYE
Sbjct: 357 LAEVNMDCRLKLASERWAIDRLLKVIKTPHPVPEVCRKAAMIIESLVSEPQNRAQLLAYE 416

Query: 421 NAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWG 460
           NAFAEILFSDGR+SDTFARILYELTSRPNNK+A+ARGIWG
Sbjct: 417 NAFAEILFSDGRHSDTFARILYELTSRPNNKMAAARGIWG 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356500441\|ref\|XP_003519040.1\| PREDICTED: uncharacterized protein LOC100814807 [Glycine max]	Back alignment and taxonomy information

>gi\|356536049\|ref\|XP_003536553.1\| PREDICTED: uncharacterized protein LOC100790539 [Glycine max]	Back alignment and taxonomy information

>gi\|449432640\|ref\|XP_004134107.1\| PREDICTED: uncharacterized protein LOC101219772 [Cucumis sativus] gi\|449516049\|ref\|XP_004165060.1\| PREDICTED: uncharacterized LOC101219772 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224099867\|ref\|XP_002311651.1\| predicted protein [Populus trichocarpa] gi\|118487781\|gb\|ABK95714.1\| unknown [Populus trichocarpa] gi\|222851471\|gb\|EEE89018.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|358346987\|ref\|XP_003637544.1\| hypothetical protein MTR_090s0013 [Medicago truncatula] gi\|355503479\|gb\|AES84682.1\| hypothetical protein MTR_090s0013 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|358345932\|ref\|XP_003637028.1\| hypothetical protein MTR_067s0040, partial [Medicago truncatula] gi\|355502963\|gb\|AES84166.1\| hypothetical protein MTR_067s0040, partial [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255551987\|ref\|XP_002517038.1\| conserved hypothetical protein [Ricinus communis] gi\|223543673\|gb\|EEF45201.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|125559139\|gb\|EAZ04675.1\| hypothetical protein OsI_26829 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|297725863\|ref\|NP_001175295.1\| Os07g0609766 [Oryza sativa Japonica Group] gi\|14192867\|gb\|AAK55772.1\|AC079038_6 Unknown protein [Oryza sativa] gi\|34394199\|dbj\|BAC84651.1\| unknown protein [Oryza sativa Japonica Group] gi\|255677964\|dbj\|BAH94023.1\| Os07g0609766 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		462
TAIR\|locus:2094618		460	LFR "LEAF AND FLOWER RELATED"	0.889	0.893	0.756	3.1e-170
ZFIN\|ZDB-GENE-030131-6311		1573	arid2 "AT rich interactive dom	0.363	0.106	0.281	2.6e-07
UNIPROTKB\|J9PA03		1687	ARID2 "Uncharacterized protein	0.391	0.107	0.264	3.4e-07
UNIPROTKB\|F1N463		1739	ARID2 "Uncharacterized protein	0.391	0.104	0.264	3.8e-07
UNIPROTKB\|I3LU38		1739	ARID2 "Uncharacterized protein	0.391	0.104	0.264	3.8e-07
UNIPROTKB\|Q68CP9		1835	ARID2 "AT-rich interactive dom	0.391	0.098	0.264	4.5e-07
UNIPROTKB\|E2RFL8		1836	ARID2 "Uncharacterized protein	0.391	0.098	0.264	4.5e-07
UNIPROTKB\|E1C9H0		1831	ARID2 "Uncharacterized protein	0.445	0.112	0.246	1.2e-06
UNIPROTKB\|F8WCU9		1639	ARID2 "AT-rich interactive dom	0.391	0.110	0.264	2.5e-05
DICTYBASE\|DDB_G0278395		588	DDB_G0278395 [Dictyostelium di	0.251	0.197	0.25	0.00026

TAIR\|locus:2094618 LFR "LEAF AND FLOWER RELATED" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1655 (587.6 bits), Expect = 3.1e-170, P = 3.1e-170
 Identities = 314/415 (75%), Positives = 367/415 (88%)

Query:    46 PTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPL 105
             P+ LLGPSL VH+SF +QN++RIVLALQSGLKSE+TWALNTLTLLSFKEK+D+R+D  PL
Sbjct:    49 PSALLGPSLLVHNSFVEQNNRRIVLALQSGLKSEVTWALNTLTLLSFKEKEDIRRDVMPL 108

Query:   106 AKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPR 165
             AKI GLLDALL +IDDWRDIALPK+L++G R RTLG N+ VTGFG+E++AL SI    P 
Sbjct:   109 AKIAGLLDALLLIIDDWRDIALPKDLTRGTRVRTLGTNASVTGFGNEYDALASIQP--P- 165

Query:   166 XXXXXXXXAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSF 225
                     AA++L +K+  + +SS+WW +EDGLFNLDDEGR+EKQ CA+ ASN+IRNFSF
Sbjct:   166 -GSGIGSSAAEALGKKSTGKHQSSQWWMEEDGLFNLDDEGRSEKQMCAIAASNVIRNFSF 224

Query:   226 MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYI 285
             MPDNEV+MAQHRHCLETVFQCI DH+TEDEELVTN+LETIVNLA L+DLRIFSS KQSYI
Sbjct:   225 MPDNEVVMAQHRHCLETVFQCIHDHMTEDEELVTNSLETIVNLAHLMDLRIFSSLKQSYI 284

Query:   286 KITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSL 345
              I EK+AV+A++GIL S  KAW+CAAAELLGRLIINPDNEPF+ P +PQIHKRL+DL+S+
Sbjct:   285 NINEKKAVQAVVGILNSSVKAWNCAAAELLGRLIINPDNEPFISPLIPQIHKRLIDLLSI 344

Query:   346 PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILES 405
              A DAQAAAVGALYNL EVN+DCRLKLASERWA+DRLL+VIKTPHPVPEVCRKAAMILE+
Sbjct:   345 QAVDAQAAAVGALYNLVEVNMDCRLKLASERWAVDRLLKVIKTPHPVPEVCRKAAMILEN 404

Query:   406 LVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWG 460
             LVSEPQNR LLLAYENAFAE+LF +G+YSD+FARILYELT+R N++VASARGIWG
Sbjct:   405 LVSEPQNRGLLLAYENAFAELLFQEGKYSDSFARILYELTARSNSRVASARGIWG 459

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0006312 "mitotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

ZFIN\|ZDB-GENE-030131-6311 arid2 "AT rich interactive domain 2 (ARID, RFX-like)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|J9PA03 ARID2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N463 ARID2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LU38 ARID2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q68CP9 ARID2 "AT-rich interactive domain-containing protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RFL8 ARID2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C9H0 ARID2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F8WCU9 ARID2 "AT-rich interactive domain-containing protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0278395 DDB_G0278395 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		462
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-04

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 337 KRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVC 396
             LV L+     +   AA+ AL NLA    D +L +      + +L+ ++       ++ 
Sbjct: 52  PALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG-GVPKLVNLLD--SSNEDIQ 108

Query: 397 RKAAMILESLVS 408
           + A   L +L S
Sbjct: 109 KNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		462
PF12031		257	DUF3518: Domain of unknown function (DUF3518); Int	99.97
KOG2312		847	consensus Predicted transcriptional regulator, con	99.85
PF05804		708	KAP: Kinesin-associated protein (KAP)	98.12
PF05804		708	KAP: Kinesin-associated protein (KAP)	97.69
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.63
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.52
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	97.46
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.37
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	96.93
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.7
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	96.53
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	96.4
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.33
KOG1048		717	consensus Neural adherens junction protein Plakoph	96.11
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.1
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	95.98
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	94.47
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	94.34
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.78
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	91.76
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	90.96
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	90.92
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	90.5
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	89.84
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	89.4
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	89.14
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	88.81
KOG1048		717	consensus Neural adherens junction protein Plakoph	88.09
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	87.86
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	87.25
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	86.84
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	86.52
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	84.09
PRK09687		280	putative lyase; Provisional	83.93
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	83.63
PRK09687		280	putative lyase; Provisional	82.84
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	82.38
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	82.18
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	81.45
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	80.45
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	80.3
PF05536		543	Neurochondrin: Neurochondrin	80.25
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	80.19

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised	Back alignment and domain information

Probab=99.97  E-value=7.5e-31  Score=253.46  Aligned_cols=178  Identities=25%  Similarity=0.274  Sum_probs=157.2

Q ss_pred             HHhhhhhhhhhhcCCCCCccHHHHhhCcchHHHH---HhhhcccCCC-----------h-----------------HHHH
Q 012499          210 QQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETV---FQCIEDHVTE-----------D-----------------EELV  258 (462)
Q Consensus       210 qr~a~~~s~ILRNLSf~p~N~~~LA~~~~~l~~L---Llc~~~~~~~-----------d-----------------~eLr  258 (462)
                      -+|++|++||||||||+|+|+.+||||++++.+|   ++++|.|+..           +                 .+||
T Consensus         4 a~RclclSNIlR~LSFvpGnd~emskh~~lL~ilGrlLlL~h~h~~r~~~~~~~~~~e~~~~~~~~~~~~wwwd~l~~lR   83 (257)
T PF12031_consen    4 ARRCLCLSNILRGLSFVPGNDTEMSKHPGLLLILGRLLLLHHEHPERKQKPRTYDREEEEDESLSCSEAEWWWDCLEQLR   83 (257)
T ss_pred             HHHHHHHHHHHhccCcCCCcHHHHhhChhHHHHHHHHHhcccCCcccccCCCCcchhhhhccccccchHHHHHHHHHHHh
Confidence            3567899999999999999999999999999986   6677877741           0                 2699


Q ss_pred             HHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCC----------CHHHHHHHHHHHHHhhcCCCCcccc
Q 012499          259 TNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSP----------FKAWHCAAAELLGRLIINPDNEPFL  328 (462)
Q Consensus       259 ~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~----------Dr~~ii~aLE~L~kL~~~~~Ne~~l  328 (462)
                      +++|++++||++++||++|++++.  .||.+++++|+++..-...          -.++++.|||+|+|||+.++|+|+|
T Consensus        84 EnalV~laNisgqLdLs~~~e~I~--~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVDli  161 (257)
T PF12031_consen   84 ENALVTLANISGQLDLSDYPESIA--RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVDLI  161 (257)
T ss_pred             hcceEeeeeeeeeeecccCchHHH--HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCccee
Confidence            999999999999999999987763  2689999999999765433          3678999999999999999999999


Q ss_pred             CCCchH-----HHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCC
Q 012499          329 LPFVPQ-----IHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP  389 (462)
Q Consensus       329 l~~~~~-----i~~rlv~lL~l~-D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~  389 (462)
                      +.+.|.     +|..++++|+.+ |+.++|+++.+|.+|++.++.+|+.+|.++++|.+||+||++.
T Consensus       162 LaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a  228 (257)
T PF12031_consen  162 LATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA  228 (257)
T ss_pred             eeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence            988774     899999999984 5699999999999999999999999999999999999999876

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		462
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-12
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-12
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-05
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-12
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-11
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-05
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	1e-11
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	2e-11
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	3e-05
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	3e-04
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	4e-04
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	9e-04
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-09
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	7e-08
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-06
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-06
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	4e-04
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	1e-06
3nmz_A		458	APC variant protein; protein-protein complex, arma	2e-06
3nmz_A		458	APC variant protein; protein-protein complex, arma	3e-04
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	6e-06
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	3e-04
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-06
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	9e-06
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-05
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-05
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-05
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-04
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-05
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	7e-05
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-05
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	9e-05
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	1e-04

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

 Score = 68.5 bits (167), Expect = 2e-12
 Identities = 37/252 (14%), Positives = 85/252 (33%), Gaps = 20/252 (7%)

Query: 210 QQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLA 269
              A      +   S    +   + +    +  + + +++  T D E       T+ NL 
Sbjct: 167 VNKAAVM---VHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNL- 220

Query: 270 PLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLL 329
                   S  ++  + I +   + A++ +LGSP  +    A   L  L+++ +     +
Sbjct: 221 --------SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272

Query: 330 PFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 389
                + K +V L++       A     L  LA  N + +L + +       L+ +++T 
Sbjct: 273 RLAGGLQK-MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-GPQALVNIMRTY 330

Query: 390 HPVPEVCRKAAMILESLVSEPQNRVLLLAYE--NAFAEILFS-DGRYSDTFARILYELTS 446
               ++    + +L+ L     N+  ++      A    L     R        L  L+ 
Sbjct: 331 TY-EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 389

Query: 447 RPNNKVASARGI 458
               +      +
Sbjct: 390 AATKQEGMEGLL 401

PyMOL of 2z6g

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		462
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	98.95
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	98.83
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	98.71
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	98.69
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	98.67
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	98.66
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	98.64
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	98.63
3nmz_A		458	APC variant protein; protein-protein complex, arma	98.58
3nmz_A		458	APC variant protein; protein-protein complex, arma	98.56
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.55
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	98.53
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.52
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	98.46
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	98.37
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.35
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.28
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.27
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.25
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.22
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.21
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.2
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	98.18
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.14
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.13
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.08
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	98.06
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.06
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	98.02
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.99
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	97.98
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	97.96
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	97.84
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	97.84
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	97.81
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	97.8
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.65
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	97.55
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	97.06
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.84
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	96.81
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	96.3
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	96.12
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	95.97
3grl_A		651	General vesicular transport factor P115; vesicle t	95.69
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	95.6
3grl_A		651	General vesicular transport factor P115; vesicle t	95.25
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	94.97
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	94.84
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	94.15
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	94.05
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	93.09
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	92.84
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	92.61
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	92.07
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	91.47
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	91.43
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	91.39
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	91.34
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	91.17
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	90.63
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	90.3
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	90.13
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	90.09
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	89.2
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	88.95
1qgr_A		876	Protein (importin beta subunit); transport recepto	88.92
1qgr_A		876	Protein (importin beta subunit); transport recepto	88.18
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	87.58
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	85.32
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	84.19
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	80.3

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

Probab=98.95  E-value=1.4e-08  Score=93.74  Aligned_cols=219  Identities=17%  Similarity=0.166  Sum_probs=161.5

Q ss_pred             hhhhhhcCCCCCc-cHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCc-cccccccCCcchhhhhcHHHHH
Q 012499          216 ASNIIRNFSFMPD-NEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPL-LDLRIFSSSKQSYIKITEKRAV  293 (462)
Q Consensus       216 ~s~ILRNLSf~p~-N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~-l~L~~~~~~~~~~i~i~~~~ll  293 (462)
                      +..+|+|++.... |...+.+. +.+..|+.++.+   .+.+++..++.++.|++.. -+...         .+...-.+
T Consensus        22 a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i   88 (252)
T 4hxt_A           22 AARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTS---TDSEVQKEAARALANIASGPDEAIK---------AIVDAGGV   88 (252)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhC---CCHHHHHHHHHHHHHHHcCChHHHH---------HHHHCCCH
Confidence            5788889877665 77777765 557777767665   3468999999999999964 11110         11122346


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHHhhc-CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHH
Q 012499          294 EAIMGILGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL  372 (462)
Q Consensus       294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~-~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~i  372 (462)
                      ..+..++.+++......|+.+|++|+. ++.+...+..  ...+..++++|..++..++..++.+|.+++......+..+
T Consensus        89 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  166 (252)
T 4hxt_A           89 EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI  166 (252)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            778888899999999999999999994 4454443332  1278889999999999999999999999999877665555


Q ss_pred             hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCchhhHHhh--HHHHHHHHh-cchhhHHHHHHHHHHHhcCC
Q 012499          373 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS-EPQNRVLLLAY--ENAFAEILF-SDGRYSDTFARILYELTSRP  448 (462)
Q Consensus       373 a~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~-~p~nr~~ll~~--E~~l~~i~~-sD~~~~~~~~~iL~~l~~~~  448 (462)
                      . ..+.|..|+.++..+  ++++-+.|+.+|.+|+. .|+++..+...  =+.|..+.- .|+.+...-..+|..+....
T Consensus       167 ~-~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          167 V-DAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             H-HTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             H-HCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence            4 478999999999865  67889999999999998 55555555431  123333322 48888999999999998877


Q ss_pred             CCcc
Q 012499          449 NNKV  452 (462)
Q Consensus       449 ~~~~  452 (462)
                      .++.
T Consensus       244 ~~~~  247 (252)
T 4hxt_A          244 WLEH  247 (252)
T ss_dssp             BCCC
T ss_pred             Cccc
Confidence            6653

PyMOL of 4hxt

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		462
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-06
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-04
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.004
d1wa5b_		503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-05
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-04
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-04
d1xqra1		264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	0.004

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 19/136 (13%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 287 ITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSL- 345
             +++ +  I  +L S       + A LL  +  +P     +     Q+   +  L++  
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM---GNQVFPEVTRLLTSH 383

Query: 346 -----PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAA 400
                 + D  ++A   + NL         +  S    ++ ++ + ++    P+    A 
Sbjct: 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS-MLNNIINLCRSSAS-PKAAEAAR 441

Query: 401 MILESLVSEPQNRVLL 416
           ++L  + S  + + +L
Sbjct: 442 LLLSDMWSSKELQGVL 457

PyMOL of d1xm9a1

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		462
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.27
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.1
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.99
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.96
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.71
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.5
d1b3ua_		588	Constant regulatory domain of protein phosphatase	92.84
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	92.04
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	90.36
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	89.11
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	88.55
d1b3ua_		588	Constant regulatory domain of protein phosphatase	88.17
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	88.07
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	88.06
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	87.84
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	85.49
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	83.65
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	82.13
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	80.02

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.3e-06  Score=85.50  Aligned_cols=222  Identities=15%  Similarity=0.179  Sum_probs=161.5

Q ss_pred             hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499          216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA  295 (462)
Q Consensus       216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~  295 (462)
                      ++.++.+++=...+...+.+.+.++..|+.++...  .+.+++..+.-+|.+++..-+...         .+...-.+..
T Consensus        37 A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~--~~~~~~~~a~~~L~~l~~~~~~~~---------~i~~~g~i~~  105 (529)
T d1jdha_          37 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGLL---------AIFKSGGIPA  105 (529)
T ss_dssp             HHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSHHHHH---------HHHHTTHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCchhHH---------HHHHCCCHHH
Confidence            57778888877888888889999888887665432  345799999999999975433321         1111223577


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCch-HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhc
Q 012499          296 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP-QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS  374 (462)
Q Consensus       296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~-~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~  374 (462)
                      |+.+|.++|...+..|+++|++||....+.....  .. ..++.++.+|..++.+++..+..+|++++..+..... ...
T Consensus       106 Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~--~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~  182 (529)
T d1jdha_         106 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV--RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL-IIL  182 (529)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH--HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHH--HhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH-HHH
Confidence            7888999999999999999999998766543211  11 1678899999999999999999999999987766543 455


Q ss_pred             chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHH--HHHHHh-cchhhHHHHHHHHHHHhcCCCCc
Q 012499          375 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENA--FAEILF-SDGRYSDTFARILYELTSRPNNK  451 (462)
Q Consensus       375 ~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~--l~~i~~-sD~~~~~~~~~iL~~l~~~~~~~  451 (462)
                      ..+.+..|++++.... ..++...|+..|.+++..++|+..+....-.  |..+.- .|+++.......|..++.....+
T Consensus       183 ~~~~~~~L~~ll~~~~-~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~  261 (529)
T d1jdha_         183 ASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ  261 (529)
T ss_dssp             HTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred             hcccchHHHHHHHhhh-hHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch
Confidence            6778999999996642 4567788999999999999999988765421  221111 25666666666777776655544


Q ss_pred             c
Q 012499          452 V  452 (462)
Q Consensus       452 ~  452 (462)
                      .
T Consensus       262 ~  262 (529)
T d1jdha_         262 E  262 (529)
T ss_dssp             S
T ss_pred             h
Confidence            3

PyMOL of d1jdha_

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure