Citrus Sinensis ID: 012502

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
MNEKANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRGGNTKSPSRVSEEKASFHRPLPSSSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
ccccHHHcHHHHHHHHHHHHHHHccccccccccccccccccEEccccEEEEccccccccccccccccEEccccccccHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccc
ccccccccHHHHHHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccc
MNEKANVSKELNAKHRKILDGllklpenrecadckakgprwasvNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGneksnsyweaelppnydrvgIENFIRAKyeekrwiprggntkspsrvseekasfhrplpsssghrytnninrvpdvrniahppnasndiaapkhsspatVKVVQQVTpslkiqepvqnseptvpksepakqEAITTAVIQHkkqnsepavpkyeppkqeasttpqrkvDYATDLFNLlctddsrendsktsndekscanlqstnastaepinsskateskVQTRYRIEDlfmgspsvipsvseksqkDVKNDVMNLfgksemvspfsidQQQSFLAAASVnsnggsqsfpinvhqpgsngihvpiqswgvvghqvpgmmmpiaDQQKYVQMRNsqllypagnfvnlptsrytdAAFFIFLFLICMHLVYHNHSV
mnekanvskelnakhrkildgllklpenRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEaelppnydrVGIENFIRAkyeekrwiprggntkspsrvseEKASfhrplpsssghrytNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPslkiqepvqnseptvpksepakQEAITTAVIQhkkqnsepavpkyeppkqeasttpqrkVDYATDLFNLLCTDdsrendsktsndekscanlqstnastaepinsskateskvQTRYRIEDlfmgspsvipsvseksqkdVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
MNEKANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRGGNTKSPSRVSEEKASFHRPLPSSSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
****************KILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWI*************************************************************************************************************************************DYATDLFNLLCT*********************************************************************************************************************SNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYH****
*********************LLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWI***************************************************************************************************************************************************************************************************************************************************************************************************************************YTDAAFFIFLFLICMHLVYHN***
*********ELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRG**********************SSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQ*****************QEAITTAVI*************************QRKVDYATDLFNLLCTDDS****************LQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
*********ELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRG*****************************************************************************************************************************************************************************************************SVIP******QKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNH**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
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MNEKANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRGGNTKSPSRVSEEKASFHRPLPSSSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query462 2.2.26 [Sep-21-2011]
Q9FL69483 Probable ADP-ribosylation yes no 0.859 0.821 0.458 2e-93
Q0WQQ1232 Probable ADP-ribosylation no no 0.285 0.568 0.704 7e-53
Q5F413428 Stromal membrane-associat yes no 0.242 0.261 0.525 5e-33
Q91VZ6440 Stromal membrane-associat yes no 0.231 0.243 0.531 3e-31
Q8WU79429 Stromal membrane-associat yes no 0.242 0.261 0.5 4e-31
Q7TN29428 Stromal membrane-associat no no 0.242 0.261 0.5 4e-31
Q5EA00429 Stromal membrane-associat no no 0.242 0.261 0.5 5e-31
Q8IYB5467 Stromal membrane-associat no no 0.231 0.229 0.522 2e-30
Q9UT34320 Uncharacterized protein C yes no 0.244 0.353 0.483 4e-29
P40529298 ADP-ribosylation factor G yes no 0.233 0.362 0.525 8e-28
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function desciption
 Score =  342 bits (878), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 215/469 (45%), Positives = 282/469 (60%), Gaps = 72/469 (15%)

Query: 1   MNEKANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
           MNEKANVSKELNA+HRKIL+GLLK PENRECADCK KGPRWASVNLGIFICMQCSGIHRS
Sbjct: 1   MNEKANVSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRS 60

Query: 61  LGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEK 120
           LGVHISKVRSATLDTWLPEQVA IQSMGN+K+NSYWEAELPPNYDRVGIENFIRAKYEEK
Sbjct: 61  LGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEK 120

Query: 121 RWIPRGGNTKSPSRVSEE-KASFHRPLPSSSGHRYTNNINRVPDVRNIAHPPNASNDIAA 179
           RW+ RG   +SP RV +E + S  R  P       ++ +N   + + I       N++AA
Sbjct: 121 RWVSRGEKARSPPRVEQERRKSVERSGPGYEHGHSSSPVNLFEERKTIPA-SRTRNNVAA 179

Query: 180 PKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVP 239
            + + P   +   QV   +K Q+ ++++   V +    +++A+  A             P
Sbjct: 180 TRINLPVPPQGPSQV---IKPQQKMESAATPVER----EKQAVNVA-------------P 219

Query: 240 KYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSK-----TSNDEKSCANLQSTNAS 294
             +PP          KVD+ATDLFN+L  DDS  N S+     T  D+ S A  QS  + 
Sbjct: 220 ASDPP----------KVDFATDLFNMLSMDDSTTNTSEATPGDTPADDNSWAGFQSAGSG 269

Query: 295 -TAEPINSSKATESKVQTRYR--IEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMV 351
            TAE I ++K  ES          EDLF  +P++    ++++ KDVK D+M+LF K+ +V
Sbjct: 270 QTAEKIVTAKPAESSSPPASSSDFEDLFKDTPNL---TTQQAPKDVKGDIMSLFEKTNIV 326

Query: 352 SPFSIDQQQSFLAA-------ASVNSNGGSQSFPINVHQPG-SNGIHVPIQSWG-VVGHQ 402
           SPF++ QQQ  + A       A+  + GG+   P  V+Q   +N ++V   +W    G+Q
Sbjct: 327 SPFAMHQQQVAMLAQQQALYMAAAKAAGGT---PNGVNQQAIANALNVASANWSNPGGYQ 383

Query: 403 VPGMMMPI---ADQQKY--------------VQMRNSQLLYPAGNFVNL 434
           +PGM  P+   AD QK                Q + + L YP+ +F  +
Sbjct: 384 IPGMTNPVGGQADLQKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTM 432
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q0WQQ1|AGD15_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q91VZ6|SMAP1_MOUSE Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1 Back     alignment and function description
>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1 Back     alignment and function description
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9UT34|YIQ9_SCHPO Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.09c PE=4 SV=1 Back     alignment and function description
>sp|P40529|AGE2_YEAST ADP-ribosylation factor GTPase-activating protein effector protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AGE2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
359496730507 PREDICTED: probable ADP-ribosylation fac 0.887 0.808 0.585 1e-137
359493891478 PREDICTED: probable ADP-ribosylation fac 0.891 0.861 0.548 1e-122
225461326475 PREDICTED: probable ADP-ribosylation fac 0.870 0.846 0.546 1e-120
255560834454 ARF GTPase activator, putative [Ricinus 0.850 0.865 0.532 1e-114
224123040478 predicted protein [Populus trichocarpa] 0.870 0.841 0.513 1e-112
224115066492 predicted protein [Populus trichocarpa] 0.898 0.843 0.509 1e-112
255580436482 Stromal membrane-associated protein, put 0.885 0.848 0.514 1e-111
359806292500 uncharacterized protein LOC100807561 [Gl 0.880 0.814 0.508 1e-110
356543996484 PREDICTED: probable ADP-ribosylation fac 0.889 0.849 0.518 1e-108
357452395474 Arf-GAP with coiled-coil, ANK repeat and 0.883 0.860 0.517 1e-108
>gi|359496730|ref|XP_003635314.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Vitis vinifera] gi|302144235|emb|CBI23473.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/446 (58%), Positives = 309/446 (69%), Gaps = 36/446 (8%)

Query: 1   MNEKANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
           MN+KA+VSKELNA+HRKIL+GLLKLPENRECADCK+K PRWASVNLGIFICMQCSGIHRS
Sbjct: 1   MNDKASVSKELNARHRKILEGLLKLPENRECADCKSKAPRWASVNLGIFICMQCSGIHRS 60

Query: 61  LGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEK 120
           LGVHISKVRSATLDTWLP+QVA IQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEK
Sbjct: 61  LGVHISKVRSATLDTWLPDQVAFIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEK 120

Query: 121 RWIPRGGNTKSPSRVSEEKASFHRPLPSSSG-HRYTNNINRVPDVRNIAHPPNASNDIAA 179
           RW+PR G   S SR S++KAS +RP P  SG HRYTNN+    D +NI HPPN ++ I A
Sbjct: 121 RWVPRDGKAISHSRESQQKASAYRPRPGGSGAHRYTNNVEHSSDKKNI-HPPNTNSSIPA 179

Query: 180 PKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVP 239
            K   PA  KV +Q TP  + QE VQ SE ++ K+EP KQ A  T ++            
Sbjct: 180 SKSRIPAASKVSKQTTPDPQPQENVQKSESSISKAEPVKQAATATPIV------------ 227

Query: 240 KYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNA-STAEP 298
              PP          +VDYATDLF +L   DSRENDS+ S         QS  A ST E 
Sbjct: 228 --SPP----------RVDYATDLFRMLSVKDSRENDSEISAANGVSTGFQSAEASSTVEK 275

Query: 299 INSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSID- 357
              S   ES +Q++  IEDLF     V P + EK QKD+KND+MNLF KS MVSPFSI  
Sbjct: 276 STPSNPVESNIQSKTGIEDLFKDLTLVTPPILEKPQKDMKNDIMNLFEKSSMVSPFSIHQ 335

Query: 358 -------QQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPI 410
                  QQQSFL AA+  SN GS +F  ++HQPG+NG+H+  Q+WG +GHQ PG++ P+
Sbjct: 336 QQVAMLAQQQSFLMAAAARSN-GSHTFSGSIHQPGTNGVHLSTQNWGNIGHQRPGVLTPV 394

Query: 411 ADQQKYVQMRNSQLLYPAGNFVNLPT 436
            + QK++QM N +  + +G  V LPT
Sbjct: 395 TEPQKHMQMGNIRPTHWSGTNVPLPT 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493891|ref|XP_003634688.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 2 [Vitis vinifera] gi|302143074|emb|CBI20369.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461326|ref|XP_002284562.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255560834|ref|XP_002521430.1| ARF GTPase activator, putative [Ricinus communis] gi|223539329|gb|EEF40920.1| ARF GTPase activator, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224123040|ref|XP_002330426.1| predicted protein [Populus trichocarpa] gi|222871811|gb|EEF08942.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115066|ref|XP_002316931.1| predicted protein [Populus trichocarpa] gi|222859996|gb|EEE97543.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255580436|ref|XP_002531044.1| Stromal membrane-associated protein, putative [Ricinus communis] gi|223529372|gb|EEF31337.1| Stromal membrane-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359806292|ref|NP_001240964.1| uncharacterized protein LOC100807561 [Glycine max] gi|255635528|gb|ACU18115.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356543996|ref|XP_003540442.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Glycine max] Back     alignment and taxonomy information
>gi|357452395|ref|XP_003596474.1| Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein [Medicago truncatula] gi|355485522|gb|AES66725.1| Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
TAIR|locus:2162580483 AGD5 "AT5G54310" [Arabidopsis 0.478 0.457 0.625 4.9e-69
TAIR|locus:2090517232 AGD15 "AT3G17660" [Arabidopsis 0.285 0.568 0.704 2e-49
WB|WBGene00012359495 W09D10.1 [Caenorhabditis elega 0.393 0.367 0.398 1.3e-39
ZFIN|ZDB-GENE-060920-2483 smap1 "stromal membrane-associ 0.248 0.238 0.537 6.5e-39
UNIPROTKB|Q5EA00429 SMAP2 "Stromal membrane-associ 0.242 0.261 0.5 1.5e-37
ASPGD|ASPL0000049357 565 AN1931 [Emericella nidulans (t 0.430 0.352 0.392 2e-36
UNIPROTKB|E1BX68447 E1BX68 "Uncharacterized protei 0.285 0.295 0.482 5.7e-36
FB|FBgn0033349517 CG8243 [Drosophila melanogaste 0.285 0.255 0.485 9.9e-35
UNIPROTKB|A0FI88473 SMAP1 "Uncharacterized protein 0.430 0.420 0.394 2.8e-34
MGI|MGI:2138261440 Smap1 "stromal membrane-associ 0.588 0.618 0.330 2.8e-34
TAIR|locus:2162580 AGD5 "AT5G54310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 145/232 (62%), Positives = 169/232 (72%)

Query:     1 MNEKANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
             MNEKANVSKELNA+HRKIL+GLLK PENRECADCK KGPRWASVNLGIFICMQCSGIHRS
Sbjct:     1 MNEKANVSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRS 60

Query:    61 LGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEK 120
             LGVHISKVRSATLDTWLPEQVA IQSMGN+K+NSYWEAELPPNYDRVGIENFIRAKYEEK
Sbjct:    61 LGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEK 120

Query:   121 RWIPRGGNTKSPSRVSEEKA-SFHRPLPS-SSGHRYTNNINRVPDVRNIAHPPNASNDIA 178
             RW+ RG   +SP RV +E+  S  R  P    GH  ++ +N   + + I       N++A
Sbjct:   121 RWVSRGEKARSPPRVEQERRKSVERSGPGYEHGHS-SSPVNLFEERKTIP-ASRTRNNVA 178

Query:   179 APKHSSPATVKVVQQVT-PSLKIQE---PVQNSEPTV---PKSEPAKQEAIT 223
             A + + P   +   QV  P  K++    PV+  +  V   P S+P K +  T
Sbjct:   179 ATRINLPVPPQGPSQVIKPQQKMESAATPVEREKQAVNVAPASDPPKVDFAT 230
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0010227 "floral organ abscission" evidence=IMP
GO:0032857 "activation of ARF GTPase activity" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
TAIR|locus:2090517 AGD15 "AT3G17660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00012359 W09D10.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060920-2 smap1 "stromal membrane-associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5EA00 SMAP2 "Stromal membrane-associated protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049357 AN1931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E1BX68 E1BX68 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0033349 CG8243 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A0FI88 SMAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2138261 Smap1 "stromal membrane-associated protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FL69AGD5_ARATHNo assigned EC number0.45840.85930.8219yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 2e-56
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 2e-45
COG5347319 COG5347, COG5347, GTPase-activating protein that r 8e-37
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 2e-18
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 7e-14
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 1e-13
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  182 bits (464), Expect = 2e-56
 Identities = 65/114 (57%), Positives = 83/114 (72%), Gaps = 6/114 (5%)

Query: 16  RKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
           +++L  L KLP N+ CADC A  P WAS+NLGIFIC++CSG+HRSLGVHISKVRS TLD 
Sbjct: 1   KRLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDK 60

Query: 76  WLPEQVAVIQSMGNEKSNSYWEAELPPNY------DRVGIENFIRAKYEEKRWI 123
           W PEQ+  +++ GN+++N +WEA LPP        DR   E+FIRAKY EK + 
Sbjct: 61  WTPEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEKLFA 114

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 462
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 100.0
PLN03131 705 hypothetical protein; Provisional 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.98
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.95
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.95
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.93
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.92
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.85
KOG0702524 consensus Predicted GTPase-activating protein [Sig 99.77
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.74
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.71
KOG0521785 consensus Putative GTPase activating proteins (GAP 93.84
PRK00085247 recO DNA repair protein RecO; Reviewed 82.35
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-45  Score=359.72  Aligned_cols=275  Identities=32%  Similarity=0.443  Sum_probs=184.8

Q ss_pred             cHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhh
Q 012502            8 SKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM   87 (462)
Q Consensus         8 SKrl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~g   87 (462)
                      .+...++++++|++||+.|+|+.|||||+++|+|||+|+|||||++|+||||+||+||||||||+||.|++|+|+.|+..
T Consensus         5 ~~~~~~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~   84 (287)
T KOG0703|consen    5 EKGSNERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISM   84 (287)
T ss_pred             cccccchHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHhhcCCCCCChh----HHHHHHHHHhhcCccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCcc
Q 012502           88 GNEKSNSYWEAELPPNYDRV----GIENFIRAKYEEKRWIPRGGNTKSPSRVSEEKASFHRPLPSSSGHRYTNNINRVPD  163 (462)
Q Consensus        88 GN~~aN~iwEa~lPp~~D~~----~~e~FIraKY~eKrF~~~~~~~~~ps~~~~e~~~~~~~~~~r~Gh~~~sS~~~~ed  163 (462)
                      ||.+||+|||+.+|+.+++.    .+|+|||+|||.|+|+.++.......+..++.... ...+.+.+|++.+..+....
T Consensus        85 GN~~an~~~ea~~p~~~~~p~~d~~~e~FIR~KYE~kkf~~~~~~~~s~~~~~~~~~k~-~~~~~~~~~~s~s~~~~~~~  163 (287)
T KOG0703|consen   85 GNAKANSYYEAKLPDPFRRPGPDDLVEQFIRDKYERKKFLDPEEDITSKPGSRDEESKR-SDKRSRKLSSSLSRSFVKSA  163 (287)
T ss_pred             cchhhhhhccccCCccccCCChHHHHHHHHHHHHhhhhhccchhhcccCCCcccccccc-cccCccccccchhhhhhhhc
Confidence            99999999999999877654    49999999999999998762211112222111111 22234444444433222211


Q ss_pred             cccCCCCCCCCCCCCCCCccCCCCccccccccCCCCccCCCCCCCCCCCCCccchhhhhhhhhhhhcccCCCCCCCCCCC
Q 012502          164 VRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEP  243 (462)
Q Consensus       164 RK~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~k~q~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (462)
                      |-.            ..+...+-        +          . ++          .-+...+            -++  
T Consensus       164 r~~------------~~~~~~~~--------~----------s-~~----------~~~~~~~------------~~~--  188 (287)
T KOG0703|consen  164 RED------------QLKYFLPK--------T----------S-QP----------VDDLATF------------QGP--  188 (287)
T ss_pred             ccc------------cccccccc--------C----------C-CC----------chhhhhc------------cCc--
Confidence            111            00000000        0          0 00          0000000            000  


Q ss_pred             CCCCCCCCCCCccccccccccccccCCCCCCCCCCC----CCcccccccccccccCCCCCCCCCcccccccchhhhhhhh
Q 012502          244 PKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTS----NDEKSCANLQSTNASTAEPINSSKATESKVQTRYRIEDLF  319 (462)
Q Consensus       244 ~~~~~~~~~~pKvd~atdlf~ll~~d~~~en~s~~s----~dd~~~~gfqsa~~~~~~~~~~~~~~es~~~s~~~~edlf  319 (462)
                           ........+++ +|...|.+++   ++.+++    +.+..|+.++.+...+.+...+..+..+....-...+ ++
T Consensus       189 -----~~~i~~~~~~~-~~~s~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~~~-~~  258 (287)
T KOG0703|consen  189 -----IASPHNLQTTY-SLNSTLNIFG---SGKEAADSFTLRAARFAPLAVAFSTVTEDLVPFLQRNSLSEGFMEKT-LS  258 (287)
T ss_pred             -----cccccchheee-cccccccccc---CccccCCCcccccccccccccccccCccccccccccccccccccCcc-cc
Confidence                 01244555777 9888888888   333332    6777788888877443365555555555554444444 77


Q ss_pred             cCCCCCCCCccccchhhhhhhhHhhhccccccCCcchhHH
Q 012502          320 MGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQ  359 (462)
Q Consensus       320 ~~~~~~~~~~~~~~qk~~kndim~lf~ks~~vspf~~hqq  359 (462)
                      ++-+....   .      . .|++|| +-..+.||..++|
T Consensus       259 ~~~~~~~~---~------~-~~~~~~-~~~~~~~~~~~~~  287 (287)
T KOG0703|consen  259 KPKRWFGT---Q------Q-SKSSLF-FLDGNVPFGSKES  287 (287)
T ss_pred             cccccccc---C------c-cccccc-cccccccccccCC
Confidence            77222232   1      5 899999 9999999988764

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 2e-31
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 7e-31
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 3e-23
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 3e-23
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 3e-23
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-20
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 4e-20
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 9e-19
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 1e-18
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 2e-18
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 2e-18
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 6e-16
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 9e-16
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 1e-15
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 2e-15
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 3e-15
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 8e-15
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 1e-13
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure 
Iteration: 1

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 84/116 (72%), Gaps = 4/116 (3%)
Query: 14  KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
           +++ +L  LL   +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  L
Sbjct: 13  RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNL 72
Query: 74  DTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----VGIENFIRAKYEEKRWIPR 125
           D W  EQ+  +Q MGN K+N  +EA LP  + R      +E FIR KYE+K+++ R
Sbjct: 73  DQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDR 128
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 6e-64
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 2e-62
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 3e-59
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 4e-59
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 5e-59
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 2e-58
2owa_A138 Arfgap-like finger domain containing protein; zinc 3e-56
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 1e-54
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 2e-51
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 7e-51
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 4e-47
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 3e-46
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 3e-43
3o47_A329 ADP-ribosylation factor GTPase-activating protein 2e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
 Score =  201 bits (514), Expect = 6e-64
 Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 4/137 (2%)

Query: 2   NEKANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSL 61
           +  +  +++LN +H+ IL  LL+  +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+L
Sbjct: 3   SGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNL 62

Query: 62  GVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY----DRVGIENFIRAKY 117
           GVHIS+V+S  LD W  EQ+  +Q MGN K+   +EA LP N+        +E FIR KY
Sbjct: 63  GVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKY 122

Query: 118 EEKRWIPRGGNTKSPSR 134
           E+K++  +     S   
Sbjct: 123 EKKKYYDKNAIAISGPS 139
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.98
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.97
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.97
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.97
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.96
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.96
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.95
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 87.71
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.9e-41  Score=299.16  Aligned_cols=123  Identities=47%  Similarity=0.880  Sum_probs=107.8

Q ss_pred             ccccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHH
Q 012502            5 ANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVI   84 (462)
Q Consensus         5 a~~SKrl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~L   84 (462)
                      ++.|++.+++++++|+.|++.|+|+.|+|||+++|+|+|++||||||+.|+||||+||+|||+||||+||+|++++|++|
T Consensus         4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m   83 (134)
T 2iqj_A            4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM   83 (134)
T ss_dssp             ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred             ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchhHHHHHhhcCCCCC----ChhHHHHHHHHHhhcCccccCCC
Q 012502           85 QSMGNEKSNSYWEAELPPNY----DRVGIENFIRAKYEEKRWIPRGG  127 (462)
Q Consensus        85 q~gGN~~aN~iwEa~lPp~~----D~~~~e~FIraKY~eKrF~~~~~  127 (462)
                      +.+||.++|.+||+++|+..    ....+|+|||+||++++|+.+..
T Consensus        84 ~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~  130 (134)
T 2iqj_A           84 QEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL  130 (134)
T ss_dssp             HTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred             HHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence            99999999999999998653    23468999999999999997653
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 462
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 8e-46
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  153 bits (387), Expect = 8e-46
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 8/118 (6%)

Query: 16  RKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
           ++I+  + ++  N  C DC A  P W S NLGI  C++CSGIHR LGVH S+++S TLD 
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 76  WLPEQVAVIQSMGNEKSNSYWEAELP--------PNYDRVGIENFIRAKYEEKRWIPR 125
               ++ + +++GN   N   E  LP        P  D +  +++I AKY E+R+  +
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK 120

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 88.49
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-39  Score=282.42  Aligned_cols=112  Identities=38%  Similarity=0.731  Sum_probs=104.1

Q ss_pred             HHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhcchhHHH
Q 012502           15 HRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNS   94 (462)
Q Consensus        15 ~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~gGN~~aN~   94 (462)
                      ++++|++|++.|+|+.|||||+++|+|||++||||||++|||+||+||+|||+|||++||+|++++|++|+.+||..+|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCC--------CChhHHHHHHHHHhhcCccccCC
Q 012502           95 YWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRG  126 (462)
Q Consensus        95 iwEa~lPp~--------~D~~~~e~FIraKY~eKrF~~~~  126 (462)
                      +||+++|..        .+...+++||++||++|+|+.+.
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccccc
Confidence            999987632        23456899999999999999653
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure