Citrus Sinensis ID: 012508

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
MAIGSITPKDKHSRRGKKVVDENSPLLPTRREGDAGYGGEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKKNASPSE
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHEEEEEEcHHHHcccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cccccccccHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHcccccccHcccccccccccHHEEEEEEHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
maigsitpkdkhsrrgkkvvdenspllptrregdagyggevngasftGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAgksvsygglmgeafGKWGKVLLQLSVLINNVGVLIVYMIIIGDVlsgtsssgvhhagvlegwfgdhwwngRTFVLLVTTLgifsplacfkridslsFTSALSVALAVAFVVITVGISIVKLisgglgmprilpdvtdftslinlFTVVPVLVTAFICHynvhsidneledsthikgVVRTSLALCSTVYIMTSIFGFllfgdatlDDVLANfdadlgipfgsvLSDVVRVSYAAHLMLVFPVIFYplrlnldgllfpsarplgssntrfaFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFpaaitlrdrhniatkkDKILCIFMIVLAVFSNVVAIYSDAFALFkknaspse
maigsitpkdkhsrrgkkvvdenspllptrregdagyGGEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKKNASPSE
MAIGSITPKDKHSRRGKKVVDENSPLLPTRREGDAGYGGEVNGASFTGAVFNLSTTIVGAGIMALPATMKvlglvlgialiiFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDslsftsalsvalavafvvITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRfafissglliiiflgaNFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKKNASPSE
************************************YGGEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFK*******
*************************************************VFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSDAF***********
*******************VDENSPLLPTRREGDAGYGGEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKKNASPSE
*****************************************NGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKK******
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MAIGSITPKDKHSRRGKKVVDENSPLLPTRREGDAGYGGEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKKNASPSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query462 2.2.26 [Sep-21-2011]
Q28HE5448 Probable sodium-coupled n yes no 0.857 0.883 0.300 3e-31
Q9JHZ9504 Sodium-coupled neutral am yes no 0.880 0.807 0.273 5e-30
Q99624504 Sodium-coupled neutral am yes no 0.867 0.795 0.275 6e-30
Q9JM15485 Sodium-coupled neutral am no no 0.909 0.865 0.281 1e-29
Q9DCP2505 Sodium-coupled neutral am yes no 0.839 0.768 0.277 6e-29
Q5SPB1504 Sodium-coupled neutral am no no 0.824 0.755 0.263 1e-28
Q9H2H9487 Sodium-coupled neutral am no no 0.829 0.786 0.280 1e-27
Q5R443487 Sodium-coupled neutral am no no 0.829 0.786 0.278 2e-26
A1YG32506 Sodium-coupled neutral am N/A no 0.833 0.760 0.289 3e-26
Q8IZM9456 Probable sodium-coupled n no no 0.835 0.846 0.290 4e-26
>sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1 Back     alignment and function desciption
 Score =  137 bits (344), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 213/443 (48%), Gaps = 47/443 (10%)

Query: 5   SITPKDKHSRRGKKVVDENSPLL---PTRREGDAGYGGEVNGASFTGAVFNLSTTIVGAG 61
           SI   D H     +  DE++PLL   P RR           G SF  AVFNL   I+G+G
Sbjct: 7   SINTLDGHQVSAGR--DESTPLLANSPQRRSS--------GGTSFGFAVFNLMNAIMGSG 56

Query: 62  IMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKV 121
           I+ L   M   G++   AL++ +A L   SI LLLR        SY  L   AFG+ GKV
Sbjct: 57  ILGLSYAMAKTGILGFSALLLIVALLAAYSIHLLLRMCLLTAVTSYEDLGLYAFGRSGKV 116

Query: 122 LLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWW-NGRTFVLLVTT 180
           L+  ++LI NVG +  Y+ II   L    +S       L G  G+ W+ +GRT +L++T+
Sbjct: 117 LVACTILIQNVGAMSSYLFIIKSELPAAIAS------FLPGAQGEPWYLDGRT-LLIITS 169

Query: 181 LGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRI-------- 232
           + I  PLA   +I  L +TS+LS    V F V+ V    +K  +    +P +        
Sbjct: 170 VCIVLPLALLPKIGFLGYTSSLSFFFMVYFAVVIV----IKKWNIPCPLPPLNHTVTFLQ 225

Query: 233 LPDVTDFTSLINLFT-----VVPVLVTAFICHYNVHSIDNELE--DSTHIKGVVRTSLAL 285
            P++++    +  F+      +P +  +F+CH +V  I  EL+    + ++ V    +AL
Sbjct: 226 APNISECKPKLFDFSKESAFALPTMAFSFLCHTSVLPIYCELKSPSKSKMQNVANVGIAL 285

Query: 286 CSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIF 345
              +Y ++++FG+L F D    ++L  +   L      VL   VR+     ++L  P+I 
Sbjct: 286 SFLIYYISALFGYLTFYDNVKSELLQGYSKYLP---KDVLIITVRLCILLAVLLTVPLIH 342

Query: 346 YPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVC 405
           +P R  +  + F S  P   S  R   ++  L III L A ++P +   F   G+T + C
Sbjct: 343 FPARKAVMMMFF-SRYPF--SYIRHILVTLVLNIIIVLLAIYVPDMRSVFGVVGSTTSTC 399

Query: 406 LGFIFPAAITLR-DRHNIATKKD 427
           L F+FP    ++  R + ++ + 
Sbjct: 400 LLFVFPGLFYVKLGREDCSSPQK 422
Probable sodium-dependent amino acid/proton antiporter.
Xenopus tropicalis (taxid: 8364)
>sp|Q9JHZ9|S38A3_RAT Sodium-coupled neutral amino acid transporter 3 OS=Rattus norvegicus GN=Slc38a3 PE=2 SV=1 Back     alignment and function description
>sp|Q99624|S38A3_HUMAN Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=2 SV=1 Back     alignment and function description
>sp|Q9JM15|S38A1_RAT Sodium-coupled neutral amino acid transporter 1 OS=Rattus norvegicus GN=Slc38a1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DCP2|S38A3_MOUSE Sodium-coupled neutral amino acid transporter 3 OS=Mus musculus GN=Slc38a3 PE=1 SV=1 Back     alignment and function description
>sp|Q5SPB1|S38A2_DANRE Sodium-coupled neutral amino acid transporter 2 OS=Danio rerio GN=slc38a2 PE=3 SV=1 Back     alignment and function description
>sp|Q9H2H9|S38A1_HUMAN Sodium-coupled neutral amino acid transporter 1 OS=Homo sapiens GN=SLC38A1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R443|S38A1_PONAB Sodium-coupled neutral amino acid transporter 1 OS=Pongo abelii GN=SLC38A1 PE=2 SV=1 Back     alignment and function description
>sp|A1YG32|S38A2_PANPA Sodium-coupled neutral amino acid transporter 2 OS=Pan paniscus GN=SLC38A2 PE=3 SV=1 Back     alignment and function description
>sp|Q8IZM9|S38A6_HUMAN Probable sodium-coupled neutral amino acid transporter 6 OS=Homo sapiens GN=SLC38A6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
224127528460 amino acid transporter [Populus trichoca 0.995 1.0 0.807 0.0
255586905461 amino acid transporter, putative [Ricinu 0.997 1.0 0.805 0.0
225451866462 PREDICTED: sodium-coupled neutral amino 0.997 0.997 0.794 0.0
224119332460 amino acid transporter [Populus trichoca 0.995 1.0 0.794 0.0
449470232462 PREDICTED: probable sodium-coupled neutr 0.997 0.997 0.723 0.0
357502631467 Amino acid transporter [Medicago truncat 0.997 0.987 0.720 0.0
356568857465 PREDICTED: sodium-coupled neutral amino 0.997 0.991 0.721 0.0
297818664458 predicted protein [Arabidopsis lyrata su 0.989 0.997 0.721 0.0
18406463460 Transmembrane amino acid transporter fam 0.984 0.989 0.725 0.0
222424295460 AT3G30390 [Arabidopsis thaliana] 0.984 0.989 0.722 0.0
>gi|224127528|ref|XP_002329300.1| amino acid transporter [Populus trichocarpa] gi|222870754|gb|EEF07885.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/462 (80%), Positives = 414/462 (89%), Gaps = 2/462 (0%)

Query: 1   MAIGSITPKDKHSRRGKKVVDENSPLLPTRREGDAGYGGEVNGASFTGAVFNLSTTIVGA 60
           M IG+I PK +   R  K VDEN+PLLP R+E DAG+  E NGASFTGAVFNLSTTIVGA
Sbjct: 1   MTIGNIPPKKERKSRRTKPVDENAPLLPKRQE-DAGFD-EFNGASFTGAVFNLSTTIVGA 58

Query: 61  GIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGK 120
           GIMALPATMKVLGL+LG+A+IIFMAFLT+ASIELLLRFS+AGKS SYGGLMG+AFGK G+
Sbjct: 59  GIMALPATMKVLGLILGVAMIIFMAFLTEASIELLLRFSKAGKSASYGGLMGDAFGKTGR 118

Query: 121 VLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTT 180
           +LLQ +VL+NN+GVLIVYMIIIGDVLSGTSSSG HH GVLEGWFG+HWWN R FVLL+TT
Sbjct: 119 ILLQAAVLVNNIGVLIVYMIIIGDVLSGTSSSGAHHTGVLEGWFGEHWWNARAFVLLITT 178

Query: 181 LGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFT 240
           L +FSPLACFKRIDSLS+TSALSVALAV F+VITVGI+IVKLI+G + MPR++PDVTD T
Sbjct: 179 LFVFSPLACFKRIDSLSYTSALSVALAVVFLVITVGITIVKLINGSIAMPRLMPDVTDMT 238

Query: 241 SLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLL 300
           S   LFT VPVLVTAFICHYNVHSIDNELEDS  IK VVRT+LALCSTVYIMTSIFGFLL
Sbjct: 239 SFWKLFTTVPVLVTAFICHYNVHSIDNELEDSAQIKPVVRTALALCSTVYIMTSIFGFLL 298

Query: 301 FGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSA 360
           FGDATLDDVLANFD DLGIP+ S+L+D VRVSYAAHLMLVFP++F+PLRLNLDGLLFPSA
Sbjct: 299 FGDATLDDVLANFDMDLGIPYSSLLNDAVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSA 358

Query: 361 RPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRH 420
           RP   +N RFA ++ GL+  IFLGANFIPSIWDAFQFTGATAAVCLGFIFPA+ITLRDRH
Sbjct: 359 RPFHQANMRFALLTIGLITTIFLGANFIPSIWDAFQFTGATAAVCLGFIFPASITLRDRH 418

Query: 421 NIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKKNASPSE 462
           NIATK+DKILCIFMIVLAVFSN VAIYSDA+AL K+N S SE
Sbjct: 419 NIATKRDKILCIFMIVLAVFSNAVAIYSDAYALIKRNPSHSE 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255586905|ref|XP_002534057.1| amino acid transporter, putative [Ricinus communis] gi|223525920|gb|EEF28328.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225451866|ref|XP_002282329.1| PREDICTED: sodium-coupled neutral amino acid transporter 4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119332|ref|XP_002331285.1| amino acid transporter [Populus trichocarpa] gi|222873710|gb|EEF10841.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449470232|ref|XP_004152822.1| PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Cucumis sativus] gi|449477713|ref|XP_004155101.1| PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357502631|ref|XP_003621604.1| Amino acid transporter [Medicago truncatula] gi|355496619|gb|AES77822.1| Amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356568857|ref|XP_003552624.1| PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Glycine max] Back     alignment and taxonomy information
>gi|297818664|ref|XP_002877215.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323053|gb|EFH53474.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18406463|ref|NP_566854.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gi|79314019|ref|NP_001030795.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gi|16226267|gb|AAL16119.1|AF428287_1 AT3g30390/T6J22_16 [Arabidopsis thaliana] gi|9294342|dbj|BAB02239.1| unnamed protein product [Arabidopsis thaliana] gi|15529155|gb|AAK97672.1| AT3g30390/T6J22_16 [Arabidopsis thaliana] gi|332644118|gb|AEE77639.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gi|332644119|gb|AEE77640.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222424295|dbj|BAH20104.1| AT3G30390 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
TAIR|locus:2102926460 AT3G30390 [Arabidopsis thalian 0.952 0.956 0.685 1.1e-158
TAIR|locus:2166615456 AT5G38820 "AT5G38820" [Arabido 0.948 0.960 0.646 3.7e-151
TAIR|locus:2063068440 AT2G40420 "AT2G40420" [Arabido 0.919 0.965 0.403 4.4e-84
TAIR|locus:2078381435 AT3G56200 [Arabidopsis thalian 0.896 0.951 0.393 1.5e-83
TAIR|locus:2198968489 AT1G80510 [Arabidopsis thalian 0.902 0.852 0.394 4.2e-79
UNIPROTKB|F1MXZ5504 SLC38A3 "Uncharacterized prote 0.398 0.365 0.299 1.6e-25
UNIPROTKB|E1C7L9556 SLC38A4 "Uncharacterized prote 0.402 0.334 0.301 1e-24
UNIPROTKB|E1BND4456 SLC38A6 "Uncharacterized prote 0.887 0.899 0.25 1.5e-24
UNIPROTKB|E1BXH7466 SLC38A6 "Uncharacterized prote 0.348 0.345 0.335 1.8e-24
UNIPROTKB|F1P9B0428 SLC38A6 "Uncharacterized prote 0.874 0.943 0.262 1.7e-23
TAIR|locus:2102926 AT3G30390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1546 (549.3 bits), Expect = 1.1e-158, P = 1.1e-158
 Identities = 303/442 (68%), Positives = 344/442 (77%)

Query:    21 DENSPLLPTRREGDAGYGGEVNGASFTGAVFNLSTTIVGAGIMALPATMKXXXXXXXXXX 80
             D  +PLLP    GD     E NGASF+GAVFNL+TTI+GAGIMALPATMK          
Sbjct:    21 DIAAPLLP-ECHGDEVAHDEFNGASFSGAVFNLATTIIGAGIMALPATMKILGLGLGITM 79

Query:    81 XXFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMI 140
                MAFLTDASIE LLRFS+AGK+ SYGGLMG +FG  G++LLQ++VL+NN+GVLIVYMI
Sbjct:    80 IVVMAFLTDASIEFLLRFSKAGKNRSYGGLMGGSFGNPGRILLQVAVLVNNIGVLIVYMI 139

Query:   141 IIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDXXXXXX 200
             IIGDVL+G +  G+HH GVLEGWFG HWWNGR  +LL+TTLG+F+PLACFKRID      
Sbjct:   140 IIGDVLAGKTEDGIHHFGVLEGWFGHHWWNGRAAILLITTLGVFAPLACFKRIDSLKFTS 199

Query:   201 XXXXXXXXXXXXITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHY 260
                         IT GISI+KLISGG+ MPR+LPDVTD TS  NLFTVVPVLVTAFICHY
Sbjct:   200 ALSVALAVVFLIITAGISIMKLISGGVAMPRLLPDVTDLTSFWNLFTVVPVLVTAFICHY 259

Query:   261 NVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIP 320
             NVHSI NELED + I+ VVR++L LCS+VYIMTSIFGFLLFGD TLDDVLANFD DLGIP
Sbjct:   260 NVHSIQNELEDPSQIRPVVRSALMLCSSVYIMTSIFGFLLFGDDTLDDVLANFDTDLGIP 319

Query:   321 FGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRXXXXXXXXXXX 380
             FGS+L+D VRVSYA HLMLVFP++FYPLR+N+DGLLFPSAR L +SN R           
Sbjct:   320 FGSILNDAVRVSYALHLMLVFPIVFYPLRINIDGLLFPSARSLSTSNVRFGCLTAGLISV 379

Query:   381 XXXXXNFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVF 440
                  NFIPSIWDAFQFTGATAAVCLGFIFPA+I L+DRH+ AT +D  L IFMIVLAV 
Sbjct:   380 IFLGANFIPSIWDAFQFTGATAAVCLGFIFPASIILKDRHDKATNRDTTLAIFMIVLAVL 439

Query:   441 SNVVAIYSDAFALFKKNASPSE 462
             SN +AIYSDA+ALFKKNA P E
Sbjct:   440 SNAIAIYSDAYALFKKNA-PRE 460
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2166615 AT5G38820 "AT5G38820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063068 AT2G40420 "AT2G40420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078381 AT3G56200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198968 AT1G80510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXZ5 SLC38A3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7L9 SLC38A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BND4 SLC38A6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXH7 SLC38A6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9B0 SLC38A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q28HE5S38A6_XENTRNo assigned EC number0.30020.85710.8839yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 4e-46
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 5e-28
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 4e-21
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 6e-09
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 1e-07
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  164 bits (417), Expect = 4e-46
 Identities = 108/426 (25%), Positives = 190/426 (44%), Gaps = 35/426 (8%)

Query: 43  GASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG 102
             S   AVFNL   I+GAG+++LP   K LG + G+ L++ +  ++  ++ LL++ S+  
Sbjct: 2   TISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYV 61

Query: 103 KSV------SYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHH 156
             V      SYG L    FG  GK+L+  ++L+N  GV I Y+I  GD L          
Sbjct: 62  DKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLP--------- 112

Query: 157 AGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVG 216
             + + +F     +   F+++     IF PL+    + +LS  S ++ A++  ++VI V 
Sbjct: 113 -AIFDSFFDTCHISLVYFIIIFGL--IFIPLSFIPNLSALSILSLVA-AVSSLYIVILVL 168

Query: 217 ISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNEL---EDST 273
                 +                  L  LF  + ++V AF  H  +  I N +       
Sbjct: 169 SVAELGVLT--AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFK 226

Query: 274 HIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSY 333
            +  V+ T++ + + +YI+  + G+L FG+    ++L N       P    L D+  +  
Sbjct: 227 AMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNL------PKSDWLIDIANLLL 280

Query: 334 AAHLMLVFPVIFYPLRLNLDGLLFP---SARPLGSSNTRFAFISSGLLIIIFLGANFIPS 390
             HL+L +P+  +P+R  ++ LLF    S +    S      I SGL++I +L A  +P 
Sbjct: 281 VLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPF 340

Query: 391 IWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILC--IFMIVLAVFSNVVAIYS 448
           + D     GAT+   L FI P    L+ +       +K+    I  ++  V   ++  Y 
Sbjct: 341 LGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYG 400

Query: 449 DAFALF 454
            A  + 
Sbjct: 401 VAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 462
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK10483414 tryptophan permease; Provisional 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.9
TIGR00814397 stp serine transporter. The HAAAP family includes 99.87
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.68
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.67
PRK10655438 potE putrescine transporter; Provisional 99.65
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.64
PRK10249458 phenylalanine transporter; Provisional 99.64
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.62
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.62
PRK10644445 arginine:agmatin antiporter; Provisional 99.61
PRK15049499 L-asparagine permease; Provisional 99.6
TIGR00911501 2A0308 L-type amino acid transporter. 99.59
TIGR00909429 2A0306 amino acid transporter. 99.57
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.55
PRK11021410 putative transporter; Provisional 99.55
PRK11387471 S-methylmethionine transporter; Provisional 99.54
PRK10746461 putative transport protein YifK; Provisional 99.54
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.54
PRK10238456 aromatic amino acid transporter; Provisional 99.53
TIGR00930 953 2a30 K-Cl cotransporter. 99.53
PRK10836489 lysine transporter; Provisional 99.52
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.52
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.51
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.51
TIGR00913478 2A0310 amino acid permease (yeast). 99.5
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.5
PF03845320 Spore_permease: Spore germination protein; InterPr 99.47
PRK10580457 proY putative proline-specific permease; Provision 99.46
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.38
COG0531466 PotE Amino acid transporters [Amino acid transport 99.28
KOG3832319 consensus Predicted amino acid transporter [Genera 99.27
COG0833541 LysP Amino acid transporters [Amino acid transport 99.17
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.16
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.13
PRK15238496 inner membrane transporter YjeM; Provisional 99.1
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.1
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.08
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.98
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.97
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.77
PRK11375484 allantoin permease; Provisional 98.73
COG3949349 Uncharacterized membrane protein [Function unknown 98.66
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.61
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.5
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.49
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.46
COG1457442 CodB Purine-cytosine permease and related proteins 98.42
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.41
PRK12488549 acetate permease; Provisional 98.41
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.33
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.32
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.27
TIGR00813407 sss transporter, SSS family. have different number 98.2
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.05
PRK09395551 actP acetate permease; Provisional 98.04
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.95
PRK11017404 codB cytosine permease; Provisional 97.85
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.84
PRK00701439 manganese transport protein MntH; Reviewed 97.71
PRK10484523 putative transporter; Provisional 97.65
PRK15419502 proline:sodium symporter PutP; Provisional 97.63
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.6
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.44
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.42
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.2
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.19
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.12
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.03
PRK15015 701 carbon starvation protein A; Provisional 96.79
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.74
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.68
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 96.59
COG4147529 DhlC Predicted symporter [General function predict 96.41
KOG2466572 consensus Uridine permease/thiamine transporter/al 96.07
COG1966 575 CstA Carbon starvation protein, predicted membrane 95.96
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.4
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 94.07
PRK15433439 branched-chain amino acid transport system 2 carri 93.99
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.62
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 91.63
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 90.76
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 90.24
KOG3659 629 consensus Sodium-neurotransmitter symporter [Signa 89.95
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 89.61
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 85.3
PRK15433439 branched-chain amino acid transport system 2 carri 80.81
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-56  Score=449.88  Aligned_cols=399  Identities=21%  Similarity=0.321  Sum_probs=314.7

Q ss_pred             CCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHHH
Q 012508           42 NGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKV  121 (462)
Q Consensus        42 ~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~  121 (462)
                      +..+..++++|++|+++|+|+|+||++|+++||+.|++++++++.++.|+.+++.++.++++..+|+|++++++||++++
T Consensus        58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~  137 (467)
T PTZ00206         58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSY  137 (467)
T ss_pred             CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhH
Q 012508          122 LLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSA  201 (462)
Q Consensus       122 ~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~  201 (462)
                      ++++++.+.++|+|++|+++++|.++.+++....     +++.+.. ...+ ....+.++++++|++++|++++++++|.
T Consensus       138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-----~~~~~~~-~~~r-~~~~~i~~~i~lPLs~~r~i~~L~~~S~  210 (467)
T PTZ00206        138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNA-----PDFLKQK-SGNR-LLTSLMWLCFMLPLVIPRHIDSLRYVST  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----cchhhhc-cCcE-EeeeehhhhHhhhcccccchHHHHHHHH
Confidence            9999999999999999999999999876653110     1111111 1122 2223445567899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCCCcc--C--CCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC--ch
Q 012508          202 LSVALAVAFVVITVGISIVKLISGGLGMPRI--L--PDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST--HI  275 (462)
Q Consensus       202 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~--~~  275 (462)
                      +++.+.+...+.+++.+.+.....+.+....  +  ++...++...+.+.++|+++|||.||.+++++++|||||+  |+
T Consensus       211 i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~  290 (467)
T PTZ00206        211 IAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF  290 (467)
T ss_pred             HHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH
Confidence            9985333333333333332211111111000  0  1111122234578899999999999999999999999866  88


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 012508          276 KGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGL  355 (462)
Q Consensus       276 ~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  355 (462)
                      .++...++.+++++|..+|++||+.||++++++++.|+++..     +....+.++...+.++.+||++.+|+|+.+++.
T Consensus       291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-----~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~  365 (467)
T PTZ00206        291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-----EPAIMVGFVGVLVKLFVSYALLGMACRNALYDV  365 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-----CchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            899999999999999999999999999999999999995321     456678888899999999999999999999988


Q ss_pred             cCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHh---cCccccchhhHHHH
Q 012508          356 LFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRD---RHNIATKKDKILCI  432 (462)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~---~~~~~~~~~~~~~~  432 (462)
                      +.++.++  .+.+++...+..+.+.++++|+++|+++.+++++|++++..++|++|+++|++.   .+++..+++++.++
T Consensus       366 ~~~~~~~--~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~  443 (467)
T PTZ00206        366 IGWDARK--VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTY  443 (467)
T ss_pred             hCCCccc--CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHH
Confidence            6443322  222333333445556778999999999999999999999999999999999983   22222344567899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 012508          433 FMIVLAVFSNVVAIYSDAFALF  454 (462)
Q Consensus       433 ~~~~~g~~~~v~g~~~si~~i~  454 (462)
                      +++++|+++.+.|||+++++.+
T Consensus       444 ~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        444 VVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHhheEEecchhHhhHHh
Confidence            9999999999999999999876

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.74
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.6
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.46
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.81
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.27
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.79
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.96
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.74  E-value=9.8e-16  Score=153.94  Aligned_cols=358  Identities=11%  Similarity=-0.001  Sum_probs=213.0

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHhCh
Q 012508           39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG-KSVSYGGLMGEAFGK  117 (462)
Q Consensus        39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~sy~~l~~~~~Gk  117 (462)
                      +.+|+.+.++.++..+++++|+|++.+|....+.|.. +++..++.++........+.|...+. +.....+..++.+||
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~   83 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGP   83 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCC
Confidence            3567899999999999999999999999998888864 77888888888888888888877654 455777888999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508          118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS  197 (462)
Q Consensus       118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~  197 (462)
                      +.+++..+..++........+....++.+..+++..           ++.   ...+. ....++++.-+...+..|...
T Consensus        84 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~-~~~~~~~~~~~in~~g~~~~~  148 (445)
T 3l1l_A           84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------KDP---WVLTI-TCVVVLWIFVLLNIVGPKMIT  148 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----------GSH---HHHHH-HHHHHHHHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----------ccc---HHHHH-HHHHHHHHHHHHHHhchHHHH
Confidence            999999999999888888888888888875543310           000   11111 121222222334445566666


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chh
Q 012508          198 FTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIK  276 (462)
Q Consensus       198 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~  276 (462)
                      .++.+.....++.+++.++........++.. +...|  ....++.++..++....|+|.|.+......+|+|||+ +.+
T Consensus       149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip  225 (445)
T 3l1l_A          149 RVQAVATVLALIPIVGIAVFGWFWFRGETYM-AAWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVP  225 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCC-CC-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChhhcc-cccCc--cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccc
Confidence            6665555433333332222222111111110 01111  1112355678889999999999999999999999996 789


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCch----hHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 012508          277 GVVRTSLALCSTVYIMTSIFGFLLFGDATL----DDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNL  352 (462)
Q Consensus       277 ~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~----~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~  352 (462)
                      |....+..++.++|...........+.+..    .....-+.+..    .++...+..+...+..+.+.....+...+.+
T Consensus       226 ~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~  301 (445)
T 3l1l_A          226 IATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA  301 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH----CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998877776654211    01110000000    0233445555666666666666656655554


Q ss_pred             hhhc----CCCCCCCCCCCceehhhHHHHHHHHHHHHHh--c----CCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCc
Q 012508          353 DGLL----FPSARPLGSSNTRFAFISSGLLIIIFLGANF--I----PSIWDAFQFTGATAAVCLGFIFPAAITLRDRHN  421 (462)
Q Consensus       353 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~----~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~  421 (462)
                      ..+-    .|+.-.+..++.......++..+++.++.+.  .    ..++.+.++.+  ....+.|.++.+.+++.+++
T Consensus       302 ~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~  378 (445)
T 3l1l_A          302 KAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHG  378 (445)
T ss_dssp             HHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence            4432    1211000011111111111112222222222  1    34566666654  34477888999888886554
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 96.75
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.75  E-value=0.26  Score=47.05  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=65.2

Q ss_pred             CcHHHHHHHHHHHHHhhhhch-HHHHHH-Hhc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChh
Q 012508           44 ASFTGAVFNLSTTIVGAGIMA-LPATMK-VLG---LVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKW  118 (462)
Q Consensus        44 ~s~~~~~~~l~~~~iG~GiL~-LP~af~-~~G---~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~  118 (462)
                      .|-.+.++..++..+|.|-+= .||-.. ++|   +++=.++++++++=..+.-..+.|..++.....+..+.....+++
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~   84 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR   84 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCc
Confidence            567788999999999997554 999764 555   445555556666655566666677777778888988888777644


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Q 012508          119 GKVLLQLSVLINNVGVLIVYMIIIG  143 (462)
Q Consensus       119 ~~~~~~~~~~l~~~g~~~~y~i~~~  143 (462)
                      ....+.....+..+..++-|.+..+
T Consensus        85 ~~~giG~~~~~~~~~i~~yy~vi~~  109 (509)
T d2a65a1          85 FAKILGVFGLWIPLVVAIYYVYIES  109 (509)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHhHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444555554444