Citrus Sinensis ID: 012514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
Protein Sequence
MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQGDRSRSHV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHccccHccccccccccccHEEHcHEEEEEccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mswfvpslrachadmcleprkvHEVVFFLAIYLISigtgghkpslesfgadqfdddHAEERKKKMSffnwwnsglcsglLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIigrpfyryrvpkgspltPMLQVLVAAIAkrnlphpsdpdqlfeypkvVAKGRllchtknlefldkaailedyetpvdqqspwrianvTKVEEMKLVLNVIPVWLaslpfgisvAQSTTFFIKQAATMNReigngflippasvfglTAVGMIISVTFYEKILVPVLrratgnerGIQILQRIGIGMLFSIATMVFAALVEKKrlgvveenptkgslsmsvfwlapqsiisgVADGFALVGLQeyfydqvpdsMRSLGIAFYLSVIGAANFLSSFLITVVDHvtdksgrswfgkdmnssrlDKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVAVADcyqgdrsrshv
Flexible Loop (DISEMBL)
MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDyetpvdqqspwRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVeenptkgslsmSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKsgrswfgkdmnsSRLDKFYWLLAALVAANLFVYVVVARRysyknvqrsvavadcyqgdrsrshv
Low Complexity Region (SEG)
MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSglcsglllgvtvvvyvQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNErgiqilqrigigMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWllaalvaanlfvyvvvaRRYSYKNVQRSVAVADCYQGDRSRSHV
Disordered region (IsUnstruct)
**WFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGG************************MSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNL******DQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVAVADCY*********
Disordered Region (DISOPRED)
MSWFVPS*R************VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLF***************KNLEFLDKAAI***************IANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVE****KGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYS***********************
Disordered Region (DISEMBL)
MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVAVADCY*********
Disordered Region (DISPRO)
****VPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNV*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQGDRSRSHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	462	2.2.26 [Sep-21-2011]
Q9M331	602	Probable peptide/nitrate	yes	no	0.971	0.745	0.649	0.0
P0CI03	575	Putative peptide/nitrate	no	no	0.952	0.765	0.657	1e-177
Q9M390	570	Peptide transporter PTR1	no	no	0.943	0.764	0.399	6e-94
Q9M1I2	555	Probable peptide/nitrate	no	no	0.917	0.763	0.382	5e-93
Q9LFB8	570	Peptide transporter PTR5	no	no	0.948	0.768	0.393	8e-91
Q8VZR7	583	Probable peptide/nitrate	no	no	0.924	0.732	0.414	3e-89
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.952	0.756	0.383	3e-88
Q93Z20	590	Probable peptide/nitrate	no	no	0.913	0.715	0.394	4e-88
P46032	585	Peptide transporter PTR2	no	no	0.939	0.741	0.383	4e-87
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.948	0.747	0.371	1e-85

>sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2

 Score =  636 bits (1641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/454 (64%), Positives = 369/454 (81%), Gaps = 5/454 (1%)

Query: 1   MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEE 60
           +SWF+P L+ACH DMC+EPRK HE+ FF+AIYLISIGTGGHKPSLESFGADQF+D H EE
Sbjct: 128 LSWFIPGLKACHEDMCVEPRKAHEIAFFIAIYLISIGTGGHKPSLESFGADQFEDGHPEE 187

Query: 61  RKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFY 120
           RK KMS+FNWWN+GLC+G+L  VTV+VY+++ + WG A +I+TIVMA S  IF IG+PFY
Sbjct: 188 RKMKMSYFNWWNAGLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFY 247

Query: 121 RYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYP-KVVAKGRLLCHTKNLEFLDK 179
           RYR P GSPLTPMLQV VAAIAKRNLP PSD   L E   +   KGRLL  +KNL+FLDK
Sbjct: 248 RYRAPSGSPLTPMLQVFVAAIAKRNLPCPSDSSLLHELTNEEYTKGRLLSSSKNLKFLDK 307

Query: 180 AAILEDY--ETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQ 237
           AA++ED    T  ++QSPWR+A VTKVEE+KL++N+IP+W  +L FG+   QS+T FIKQ
Sbjct: 308 AAVIEDRNENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQ 367

Query: 238 AATMNREI-GNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIG 296
           A  M+R I G  F++PPAS+F L A+ +II+VT YEK+LVP+LRRATGNERGI ILQRIG
Sbjct: 368 AIIMDRHITGTSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRATGNERGISILQRIG 427

Query: 297 IGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQE 356
           +GM+FS+  M+ AAL+EKKRL   +E+    ++++S  WLAPQ ++ GVAD F LVGLQE
Sbjct: 428 VGMVFSLFAMIIAALIEKKRLDYAKEHHMNKTMTLSAIWLAPQFLVLGVADAFTLVGLQE 487

Query: 357 YFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDK-SGRSWFGKDMNSSRLDK 415
           YFYDQVPDSMRSLGIAFYLSV+GAA+F+++ LITV DH+ ++ SG+ WFGKD+NSSRLD+
Sbjct: 488 YFYDQVPDSMRSLGIAFYLSVLGAASFVNNLLITVSDHLAEEISGKGWFGKDLNSSRLDR 547

Query: 416 FYWLLAALVAANLFVYVVVARRYSYKNVQRSVAV 449
           FYW+LAAL AAN+  +V+VA RY+YK VQ S+AV
Sbjct: 548 FYWMLAALTAANICCFVIVAMRYTYKTVQPSLAV 581

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score =  623 bits (1606), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 295/449 (65%), Positives = 362/449 (80%), Gaps = 9/449 (2%)

Query: 1   MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEE 60
           MSWF+P L+ CH ++C+EPRK HEV FF+AIYLISIGTGGHKPSLESFGADQFDDDH EE
Sbjct: 129 MSWFIPGLKPCHQEVCVEPRKAHEVAFFIAIYLISIGTGGHKPSLESFGADQFDDDHVEE 188

Query: 61  RKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFY 120
           RK KMSFFNWWN  LC+G+L  VT V Y+++ V WG A +I+T+VMA+SL+IF IG+PFY
Sbjct: 189 RKMKMSFFNWWNVSLCAGILTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFY 248

Query: 121 RYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKV-VAKGRLLCHTKNLEFLDK 179
           RYR P GSPLTP+LQV VAAIAKRNLP+PSDP  L E  K     GRLLCHT++L+FLDK
Sbjct: 249 RYRTPSGSPLTPILQVFVAAIAKRNLPYPSDPSLLHEVSKTEFTSGRLLCHTEHLKFLDK 308

Query: 180 AAILEDYE-TPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA 238
           AAI+ED     +++QSPWR+  +TKVEE KL++NVIP+W ++L FGI   Q++TFFIKQA
Sbjct: 309 AAIIEDKNPLALEKQSPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQA 368

Query: 239 ATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIG 298
            TM+R IG GF +PPAS+F LTA+ +IIS+T YEK+LVP+LR  T N+RGI ILQRIG G
Sbjct: 369 ITMDRHIG-GFTVPPASMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTG 427

Query: 299 MLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYF 358
           M+FS+ TM+ AALVEK+RL     + T  +  MSV WLAPQ ++ G AD F LVGLQEYF
Sbjct: 428 MIFSLITMIIAALVEKQRL-----DRTNNNKPMSVIWLAPQFMVIGFADAFTLVGLQEYF 482

Query: 359 YDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDK-SGRSWFGKDMNSSRLDKFY 417
           Y QVPDSMRSLGIAFYLSVIGAA+FL++ LIT VD + +  SG+SWFGKD+NSSRLD+FY
Sbjct: 483 YHQVPDSMRSLGIAFYLSVIGAASFLNNLLITAVDTLAENFSGKSWFGKDLNSSRLDRFY 542

Query: 418 WLLAALVAANLFVYVVVARRYSYKNVQRS 446
           W LA ++AAN+ V+V+VA+R  YK+VQ S
Sbjct: 543 WFLAGVIAANICVFVIVAKRCPYKSVQPS 571

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  345 bits (884), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 178/446 (39%), Positives = 270/446 (60%), Gaps = 10/446 (2%)

Query: 5   VPSLR--ACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERK 62
           VP L+   C+AD C  P      VFF+A+Y+I++GTGG KP + SFGADQFD++   E+ 
Sbjct: 119 VPGLKPGNCNADTC-HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKI 177

Query: 63  KKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRY 122
           KK SFFNW+   +  G L+  TV+V++Q +V WG    + T+ M +++  F  G  FYR 
Sbjct: 178 KKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRL 237

Query: 123 RVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEY---PKVVAKGRLLCHTKNLEFLDK 179
           + P GSPLT + QV+VAA  K ++  P D   LFE       +   R L HT NL+F DK
Sbjct: 238 QRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDK 297

Query: 180 AAILEDYETPVDQQ-SPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA 238
           AA+    ++  D + +PWR+ +VT+VEE+K ++ ++PVW   + F    +Q +T F+ Q 
Sbjct: 298 AAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQG 357

Query: 239 ATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIG 298
            TM++ +G  F IP AS+     V ++     Y++ ++P+ R+ T NERG   LQR+GIG
Sbjct: 358 NTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIG 417

Query: 299 MLFSIATMVFAALVEKKRLGVVEENPT--KGSLSMSVFWLAPQSIISGVADGFALVGLQE 356
           ++ SI  M+ A ++E  RL  V+ +    +  + MS+FW  PQ ++ G A+ F  +G  E
Sbjct: 418 LVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLE 477

Query: 357 YFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGR-SWFGKDMNSSRLDK 415
           +FYDQ PD+MRSL  A  L+ +   N+LS+ L+TVV  +T K+G+  W   ++N   LD 
Sbjct: 478 FFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDY 537

Query: 416 FYWLLAALVAANLFVYVVVARRYSYK 441
           F++LLA L   N  VY+ +++RY YK
Sbjct: 538 FFYLLATLSFLNFLVYLWISKRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  342 bits (876), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 167/437 (38%), Positives = 268/437 (61%), Gaps = 13/437 (2%)

Query: 20  RKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGL 79
           R++ E VFF+A+Y++++G GGHKP + +F ADQF + +AEE+  K SFFN+W   +    
Sbjct: 110 RRMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLAS 169

Query: 80  LLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVA 139
            + V  ++++QE VSW     II   + ++++IF+IG P YR +VP GSP T + QV+VA
Sbjct: 170 SIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVA 229

Query: 140 AIAKRNLPHP--------SDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYETPVD 191
           A+ K  L            + D+         +  LL  T    FLDKA I+++ +    
Sbjct: 230 ALKKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHN-K 288

Query: 192 QQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLI 251
            ++PWR+  V +VEE+KL+L +IP+W++ + F  ++ Q  TFF+KQ + M+R IGN F I
Sbjct: 289 NRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTI 348

Query: 252 PPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAAL 311
           PPA+   +  V ++I +  Y+++ VP++R+ T +  GI  LQRIG+G+  +   MV   L
Sbjct: 349 PPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGL 408

Query: 312 VEKKRLGVVEE----NPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMR 367
           VE KRL V  +    +  K  + MS  WL PQ I+ G+ D F +VG+QE FYDQ+P++MR
Sbjct: 409 VEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMR 468

Query: 368 SLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAAN 427
           S+G A ++SV+G  +F+S+ +I+ V  ++   G  W   ++N + LD +YW++A+L A +
Sbjct: 469 SIGAAIFISVVGVGSFVSTGIISTVQTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVS 528

Query: 428 LFVYVVVARRYSYKNVQ 444
           L  Y+ +A  + YK +Q
Sbjct: 529 LCFYLFIANHFLYKKLQ 545

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  334 bits (857), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 176/447 (39%), Positives = 264/447 (59%), Gaps = 9/447 (2%)

Query: 5   VPSLR-ACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKK 63
           VP L   C  + C         + F+A+YLI++GTGG KP + SFGADQFDD   +E++ 
Sbjct: 120 VPGLTPTCSGETC-HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKES 178

Query: 64  KMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYR 123
           K SFFNW+   +  G ++  +V+V++Q +V WG    + T+ MA++++ F  G  FYR +
Sbjct: 179 KSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQ 238

Query: 124 VPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKV---VAKGRLLCHTKNLEFLDKA 180
            P GSPLT MLQV+VA+  K  +  P D   L+E       +   R L HTK L F DKA
Sbjct: 239 KPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKA 298

Query: 181 AI-LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAA 239
           A+  E       + S W++  VT+VEE+K ++ ++P+W   + F    +Q  T F+ Q  
Sbjct: 299 AVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGN 358

Query: 240 TMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGM 299
           T+++ +G  F IP AS+     + ++     Y+K++VP  R+ TG+ERG   LQRIGIG+
Sbjct: 359 TLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGL 418

Query: 300 LFSIATMVFAALVEKKRLGVVEENP--TKGSLSMSVFWLAPQSIISGVADGFALVGLQEY 357
           + SI +MV A ++E  RL  V+ +    + ++ M++FW  PQ  + G A+ F  +G  E+
Sbjct: 419 VISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEF 478

Query: 358 FYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGR-SWFGKDMNSSRLDKF 416
           FYDQ PD+MRSL  A  L+ I   N+LS+FL+T+V  VT   GR  W  K++N+  LD F
Sbjct: 479 FYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYF 538

Query: 417 YWLLAALVAANLFVYVVVARRYSYKNV 443
           +WLLA L   N  VY+ +A+ Y+YK  
Sbjct: 539 FWLLAGLSFLNFLVYLWIAKWYTYKKT 565

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2

 Score =  329 bits (843), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 267/449 (59%), Gaps = 22/449 (4%)

Query: 5   VPSLR-ACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKK 63
           V SLR  C   +C +   +    F++++Y I+IG GG KP++ +FGADQFD    EE+K+
Sbjct: 119 VKSLRPTCENGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQ 178

Query: 64  KMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYR 123
           K+SFFNWW      G L     +VY+QE++ WG    I T+ + VSL++F IG PFYR++
Sbjct: 179 KVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHK 238

Query: 124 VPKGSPLTP-MLQVLVAAIAKRNLPHPSDPDQLFE----YPKVVAKGRLLCHTKNLEFLD 178
           V K   L   ++QV +AA   R L  P D  +L+E    Y K   K + + HT    FLD
Sbjct: 239 VIKTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQ-VHHTPVFRFLD 297

Query: 179 KAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA 238
           KAAI      P           VTKVE  K VL +I +WL +L      AQ  T F+KQ 
Sbjct: 298 KAAIKTSSRVP---------CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQG 348

Query: 239 ATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIG 298
            T++R+IG+ F IP AS+     + M++SV  Y++  VP +R+ TGN RGI +LQR+G+G
Sbjct: 349 TTLDRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVG 408

Query: 299 MLFSIATMVFAALVEKKRLGVVEE----NPTKGSLSMSVFWLAPQSIISGVADGFALVGL 354
               I  +  A+ VE KR+ V++E    +PT+  + MS+FWL PQ  + G+ D F  +GL
Sbjct: 409 FAIQIVAIAIASAVEVKRMRVIKEFHITSPTQ-VVPMSIFWLLPQYSLLGIGDVFNAIGL 467

Query: 355 QEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDK-SGRSWFGKDMNSSRL 413
            E+FYDQ P+ M+SLG  F+ S IG  NFL+SFL+T++D +T K  G+SW G ++N SRL
Sbjct: 468 LEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRL 527

Query: 414 DKFYWLLAALVAANLFVYVVVARRYSYKN 442
           D +Y  L  +   N+ ++V  A +Y YK+
Sbjct: 528 DYYYGFLVVISIVNMGLFVWAASKYVYKS 556

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  326 bits (835), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 174/454 (38%), Positives = 271/454 (59%), Gaps = 14/454 (3%)

Query: 6   PSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKM 65
           P     + + C +   +   VFF A+Y ++IGTGG KP++ + GADQFD    +E+ +K+
Sbjct: 128 PECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKL 187

Query: 66  SFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVP 125
           SFFNWW   +  G L   TV+VYVQ++V W     + T+ +A+S+ IF++G PFYR+++P
Sbjct: 188 SFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLP 247

Query: 126 KGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKV--VAKGRLLCH-TKNLEFLDKAAI 182
            GSP T M +V+VA+  K N P   D     E P +    KG    H T +L FLD+A++
Sbjct: 248 TGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRASL 307

Query: 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMN 242
               +T  + +  W +   T+VEE K +L ++PV   +    + +AQ  T F+KQ  T++
Sbjct: 308 ----KTGTNHK--WNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLD 361

Query: 243 REIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFS 302
           R++   F IPPAS+ G   + M+IS+  Y+++ V + R+ TGN RGI +LQR+GIG++F 
Sbjct: 362 RKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFH 421

Query: 303 IATMVFAALVEKKRLGVVEE----NPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYF 358
           I  M+ A++ E+ RL V  +    + T   L +++F L PQ ++ G+AD F  V   E+F
Sbjct: 422 ILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFF 481

Query: 359 YDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418
           YDQ P+SM+SLG ++  + +   NF+SSFL++ V  +T K GR W   ++N SRLD +Y 
Sbjct: 482 YDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRLDYYYL 541

Query: 419 LLAALVAANLFVYVVVARRYSYK-NVQRSVAVAD 451
             A L   N  +++VV + Y Y+  V  SV V +
Sbjct: 542 FFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKE 575

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  325 bits (834), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 171/433 (39%), Positives = 264/433 (60%), Gaps = 11/433 (2%)

Query: 15  MCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSG 74
           +C     V   VFF  +YLI++GTGG KP + SFGADQFDD    ER +K SFFNW+   
Sbjct: 162 LCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFS 221

Query: 75  LCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPML 134
           +  G  +  T++V+VQE+V WG   +I T+ M VS+  F IG P YR++ P GSP+T + 
Sbjct: 222 INIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVC 281

Query: 135 QVLVAAIAKRNLPHPSDPDQLFEYPK---VVAKGRLLCHTKNLEFLDKAAILEDYETPVD 191
           QVLVAA  K  L  P D   L+E  +   ++A  R + HT   +FLDKAA++ +YE+   
Sbjct: 282 QVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSG 341

Query: 192 Q-QSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFL 250
              +PW++  VT+VEE+K ++ + P+W + + + +  +Q +T F++Q  +MNR I   F 
Sbjct: 342 AFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRII-RSFE 400

Query: 251 IPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAA 310
           IPPAS      + ++IS+  Y++ LVP +RR TG  +G+  LQR+GIG+  S+ ++  AA
Sbjct: 401 IPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAA 460

Query: 311 LVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370
           +VE  RL + ++      ++MS+FW  PQ I+ G+A+ F  +G  E+FYD+ PD+MRS+ 
Sbjct: 461 IVETVRLQLAQD-----FVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVC 515

Query: 371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRS-WFGKDMNSSRLDKFYWLLAALVAANLF 429
            A  L      ++LSS ++T+V + T   G+  W   D+N   LD F+WLL +L   N+ 
Sbjct: 516 SALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVNIP 575

Query: 430 VYVVVARRYSYKN 442
           VY ++  +++ K 
Sbjct: 576 VYALICVKHTKKK 588

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  322 bits (825), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 173/451 (38%), Positives = 265/451 (58%), Gaps = 17/451 (3%)

Query: 5   VPSLR--ACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERK 62
           VP+L+   C  D C         +FF  +YLI++GTGG KP + SFGADQFDD  + ER 
Sbjct: 136 VPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERV 195

Query: 63  KKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRY 122
           +K SFFNW+   +  G L+  +++V++QE+  WG    I T+ M +++  F  G P YR+
Sbjct: 196 RKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRF 255

Query: 123 RVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYP---KVVAKGRLLCHTKNLEFLDK 179
           + P GSP+T + QV+VA+  K ++  P D   L+E       +A  R + HT + ++LDK
Sbjct: 256 QKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDK 315

Query: 180 AAILEDYETPV-DQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA 238
           AA++ + E+   D  + WR+  VT+VEE+K+++ + P+W + + F    AQ +T F++Q 
Sbjct: 316 AAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQG 375

Query: 239 ATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIG 298
             MN +IG+ F +PPA++       +II V  Y++ +VP+ R+ TG ++G   +QR+GIG
Sbjct: 376 RAMNCKIGS-FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIG 434

Query: 299 MLFSIATMVFAALVEKKR------LGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALV 352
           +  S+  M  AA+VE  R      LG+VE   +   + +SV W  PQ  I G A+ F  +
Sbjct: 435 LFVSVLCMAAAAIVEIIRLHMANDLGLVE---SGAPVPISVLWQIPQYFILGAAEVFYFI 491

Query: 353 GLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGR-SWFGKDMNSS 411
           G  E+FYDQ PD+MRSL  A  L      N+LSS ++T+V + T ++G+  W   ++NS 
Sbjct: 492 GQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSG 551

Query: 412 RLDKFYWLLAALVAANLFVYVVVARRYSYKN 442
            LD F+WLLA L   N+ VY   A RY  K 
Sbjct: 552 HLDYFFWLLAGLSLVNMAVYFFSAARYKQKK 582

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  317 bits (811), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 168/452 (37%), Positives = 264/452 (58%), Gaps = 14/452 (3%)

Query: 6   PSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKM 65
           P     + + C +   +   VFF A+Y ++IGTGG KP++ + GADQFD+   +++  K 
Sbjct: 128 PKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKH 187

Query: 66  SFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVP 125
           SFFNWW   +  G     TV+VYVQ++V W     + T+ +A S+ IF++G   YR+++P
Sbjct: 188 SFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLP 247

Query: 126 KGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYP--KVVAKGRLLCH-TKNLEFLDKAAI 182
            GSP T M +V+VA++ K   P  SD  + +E P  +  +K     H T +L FL++A++
Sbjct: 248 MGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRASL 307

Query: 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMN 242
                        WR+  +T+VEE K +L ++PV   +    + +AQ  T FIKQ  T++
Sbjct: 308 ------KTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLD 361

Query: 243 REIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFS 302
           R + N F IPPAS+ G T   M++S+  Y+++ V  +R+ TGN RGI +LQR+GIGM+  
Sbjct: 362 RRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILH 421

Query: 303 IATMVFAALVEKKRLGVVEE----NPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYF 358
           I  M+ A++ E+ RL V  E    + T   + +S+F L PQ ++ G+AD F  +   E+F
Sbjct: 422 ILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFF 481

Query: 359 YDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418
           YDQ P+SM+SLG ++  + +    F+SS L++ V  +T K GR W   ++N SRLD +Y 
Sbjct: 482 YDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRGWIQNNLNESRLDNYYM 541

Query: 419 LLAALVAANLFVYVVVARRYSYK-NVQRSVAV 449
             A L   N  +++VV R Y Y+ +V +S  V
Sbjct: 542 FFAVLNLLNFILFLVVIRFYEYRADVTQSANV 573

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
224090809	587	predicted protein [Populus trichocarpa]	0.982	0.773	0.771	0.0
224140315	587	predicted protein [Populus trichocarpa]	0.982	0.773	0.764	0.0
356566585	593	PREDICTED: putative peptide/nitrate tran	0.982	0.765	0.730	0.0
356520927	593	PREDICTED: putative peptide/nitrate tran	0.982	0.765	0.726	0.0
449460405	607	PREDICTED: putative peptide/nitrate tran	0.997	0.759	0.711	0.0
449530638	479	PREDICTED: putative peptide/nitrate tran	0.997	0.962	0.711	0.0
356496092	594	PREDICTED: probable peptide/nitrate tran	0.982	0.764	0.718	0.0
255586949	1133	Peptide transporter, putative [Ricinus c	0.913	0.372	0.758	0.0
357505729	583	Peptide transporter PTR3-B [Medicago tru	0.987	0.782	0.683	0.0
225440516	534	PREDICTED: probable peptide/nitrate tran	0.876	0.758	0.694	0.0

>gi|224090809|ref|XP_002309091.1| predicted protein [Populus trichocarpa] gi|222855067|gb|EEE92614.1| predicted protein [Populus trichocarpa]

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/455 (77%), Positives = 400/455 (87%), Gaps = 1/455 (0%)

Query: 1   MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEE 60
           MS FVPSL+AC A +C +PRKVHEVVFFLAIYLIS+GTGGHKPSLESFGADQFD++H +E
Sbjct: 125 MSAFVPSLKACEAAVCPKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDENHDDE 184

Query: 61  RKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFY 120
           RKKKMS+FNWWN GLC GLLLGVTVVVYVQ+HV WGA D+I T VMA+SL+IFIIGRPFY
Sbjct: 185 RKKKMSYFNWWNFGLCCGLLLGVTVVVYVQDHVGWGAGDIIFTAVMALSLVIFIIGRPFY 244

Query: 121 RYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKV-VAKGRLLCHTKNLEFLDK 179
           RY+VP GSPLTPMLQVLVAAI  RNLP+PS+P +L+E PK    KGRLLCHT++L+FLDK
Sbjct: 245 RYQVPTGSPLTPMLQVLVAAIRNRNLPYPSNPAELYEVPKSRTDKGRLLCHTESLKFLDK 304

Query: 180 AAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAA 239
           A I++D E   + Q+PWR+A VTKVEEMKL+LN+IP+WLA LPFGISVAQ+ TFFIKQ  
Sbjct: 305 ATIVKDREIGAENQNPWRLATVTKVEEMKLILNLIPIWLAMLPFGISVAQTATFFIKQGT 364

Query: 240 TMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGM 299
           T++R IGNG  IPPASV+ L A+GMI+SVT YEKILVPVLRRATGNERGI+ILQRIG GM
Sbjct: 365 TLDRNIGNGLQIPPASVYALAAIGMIVSVTIYEKILVPVLRRATGNERGIKILQRIGFGM 424

Query: 300 LFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFY 359
           LFSI+TMV +ALVE+KRLGVV ++P KGSLSMSVFWLAPQ II GV D F LVGLQEYFY
Sbjct: 425 LFSISTMVVSALVERKRLGVVAKDPVKGSLSMSVFWLAPQFIIIGVGDAFTLVGLQEYFY 484

Query: 360 DQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWL 419
           DQVPDSMRSLGIAFYLSVIGAANFLSS LIT VDHVT+K+G+SWFGKD+NSSRLD FYWL
Sbjct: 485 DQVPDSMRSLGIAFYLSVIGAANFLSSLLITAVDHVTEKTGKSWFGKDLNSSRLDNFYWL 544

Query: 420 LAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQ 454
           LA + AANL +YV +A+RY YKNVQ SVAVADCY+
Sbjct: 545 LAGMTAANLILYVFLAQRYPYKNVQSSVAVADCYK 579

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140315|ref|XP_002323528.1| predicted protein [Populus trichocarpa] gi|222868158|gb|EEF05289.1| predicted protein [Populus trichocarpa]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/455 (76%), Positives = 398/455 (87%), Gaps = 1/455 (0%)

Query: 1   MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEE 60
           MS FVPSL+AC A +CLEPRKVHE+VFF+AIY+ISIGTGGHKPSLESFGADQFD++H+EE
Sbjct: 125 MSTFVPSLKACDAAVCLEPRKVHEMVFFIAIYMISIGTGGHKPSLESFGADQFDENHSEE 184

Query: 61  RKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFY 120
           RKKKMS+FNWWN GLC GLLLGVTV+VYVQ+ V WGAAD+I+  VMA SL IFIIGRPFY
Sbjct: 185 RKKKMSYFNWWNFGLCCGLLLGVTVIVYVQDRVGWGAADIILATVMASSLAIFIIGRPFY 244

Query: 121 RYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKV-VAKGRLLCHTKNLEFLDK 179
           RY VP GSPLTPMLQVL AAI KRNLP+PSDP +L E PK  V KGRLLCHT++L+FLDK
Sbjct: 245 RYHVPPGSPLTPMLQVLAAAIKKRNLPYPSDPAELHEVPKSRVNKGRLLCHTESLKFLDK 304

Query: 180 AAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAA 239
           AAI+ED+E   ++Q PW +A VTKVEEMKL+LN+IP+WLA+LPFGISVAQ+ TFF+KQ  
Sbjct: 305 AAIVEDWENCAEKQDPWTLATVTKVEEMKLILNLIPIWLATLPFGISVAQTATFFVKQGT 364

Query: 240 TMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGM 299
            ++R IGNG  IPPAS+F L+A GMI++V  YEKILVPVLRRATGNERGI+ILQRIG GM
Sbjct: 365 MLDRNIGNGVEIPPASIFALSAFGMIVAVAIYEKILVPVLRRATGNERGIKILQRIGFGM 424

Query: 300 LFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFY 359
           LFSI+TMV +ALVE+KRLGVVE++P KGSLSMSVFWLAPQ II GV D F LVGLQEYFY
Sbjct: 425 LFSISTMVVSALVERKRLGVVEKDPVKGSLSMSVFWLAPQFIIIGVGDAFTLVGLQEYFY 484

Query: 360 DQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWL 419
           DQVPDSMRSLGIAFYLSVIGAANF+SS LIT +DHVT + G+SWFGKD+NSSRLD FYWL
Sbjct: 485 DQVPDSMRSLGIAFYLSVIGAANFISSLLITTIDHVTGRFGKSWFGKDLNSSRLDYFYWL 544

Query: 420 LAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQ 454
           +A + AANL VYV +ARRYSYKNVQRSV VADC +
Sbjct: 545 IAGMTAANLIVYVFLARRYSYKNVQRSVVVADCCE 579

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566585|ref|XP_003551511.1| PREDICTED: putative peptide/nitrate transporter At2g37900-like [Glycine max]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/457 (73%), Positives = 397/457 (86%), Gaps = 3/457 (0%)

Query: 1   MSWFVPSLRAC-HADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAE 59
           +SWF+PSL+ C   +MC EPR++HEVVFFLAIYLISIGTGGHKPSLESFGADQFD+DH E
Sbjct: 127 LSWFLPSLKPCGDTNMCTEPRRIHEVVFFLAIYLISIGTGGHKPSLESFGADQFDEDHDE 186

Query: 60  ERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPF 119
           ERK+KMSFFNWWN  LCSGL++GVT++VY+Q++++WGAAD+I T+VMA SLLIFIIGRPF
Sbjct: 187 ERKQKMSFFNWWNCALCSGLIVGVTLIVYIQDNINWGAADIIFTVVMAFSLLIFIIGRPF 246

Query: 120 YRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGR-LLCHTKNLEFLD 178
           YRYRVP GSPLTPMLQVL AAI+KR LP+PS+PDQL+E PK  +  R  LCHT  L+FLD
Sbjct: 247 YRYRVPTGSPLTPMLQVLFAAISKRKLPYPSNPDQLYEVPKYNSNNRRFLCHTNKLKFLD 306

Query: 179 KAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA 238
           KAAI+ D  +  ++QSPW +A VTKVEEMKL++N+IP+W++++PFG+ VAQ+ TFF+KQ 
Sbjct: 307 KAAIIVDDGSSAEKQSPWNLATVTKVEEMKLIINIIPIWVSTIPFGMCVAQTATFFVKQG 366

Query: 239 ATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIG 298
             +NR+IGNGF IPPAS+F + A+GM++SV  Y+KILVPVLRR T NERGI ILQRIG G
Sbjct: 367 TQLNRKIGNGFEIPPASIFTVAALGMVVSVAIYDKILVPVLRRLTQNERGINILQRIGFG 426

Query: 299 MLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYF 358
           MLFSIATM+ AALVEKKRL  VE +P KGSL+MSVFWLAPQ +I G  DGF LVGLQEYF
Sbjct: 427 MLFSIATMIVAALVEKKRLEAVERDPFKGSLTMSVFWLAPQFLIIGFGDGFTLVGLQEYF 486

Query: 359 YDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418
           YDQVPDSMRSLGIAFYLSVIGAA+FLSS LITVVDH+T KSG+SWFGKD+NSSRLDKFYW
Sbjct: 487 YDQVPDSMRSLGIAFYLSVIGAASFLSSMLITVVDHMTKKSGKSWFGKDLNSSRLDKFYW 546

Query: 419 LLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQG 455
           LLAA+   NLF++V VARRYSYKNVQ+ +AVADCY+G
Sbjct: 547 LLAAIATVNLFLFVFVARRYSYKNVQK-LAVADCYEG 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520927|ref|XP_003529111.1| PREDICTED: putative peptide/nitrate transporter At2g37900-like [Glycine max]

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/457 (72%), Positives = 394/457 (86%), Gaps = 3/457 (0%)

Query: 1   MSWFVPSLRACHA-DMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAE 59
           +SWF+PSL+ C   DMC EPR++HEVVFFLAIYLIS GTGGHKPSLESFGADQFD+DH  
Sbjct: 127 LSWFLPSLKPCDGTDMCTEPRRIHEVVFFLAIYLISFGTGGHKPSLESFGADQFDEDHDG 186

Query: 60  ERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPF 119
           ER++KMSFFNWWN  LCSGL++GVT++VY+Q++++WGAAD+I T+VMA SLLIFIIGRPF
Sbjct: 187 ERRQKMSFFNWWNCALCSGLIVGVTLIVYIQDNINWGAADIIFTVVMAFSLLIFIIGRPF 246

Query: 120 YRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGR-LLCHTKNLEFLD 178
           YRYRVP GSPLTPMLQVLVAAI+KR LP+PS+PDQL+E PK  +  R  LCHT  L+FLD
Sbjct: 247 YRYRVPTGSPLTPMLQVLVAAISKRKLPYPSNPDQLYEVPKYNSNNRRYLCHTNKLKFLD 306

Query: 179 KAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA 238
           KAAIL D  +  ++QSPW +A VTKVEEMKL++N+IP+W++++PFG+ VAQ+ TFF+KQ 
Sbjct: 307 KAAILVDDGSSAEKQSPWNLATVTKVEEMKLIINIIPIWVSTIPFGMCVAQTATFFVKQG 366

Query: 239 ATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIG 298
             +NR+IG GF IPPAS+F + A+GM++SV  Y+KILVP LRR T NERGI ILQRIG G
Sbjct: 367 TQLNRKIGEGFEIPPASIFTVAALGMVVSVAIYDKILVPALRRVTQNERGINILQRIGFG 426

Query: 299 MLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYF 358
           MLFSIATM+ AALVEKKRL  VE +P KGSL+MSVFWLAPQ +I G  DGF LVGLQEYF
Sbjct: 427 MLFSIATMIVAALVEKKRLEAVERDPLKGSLTMSVFWLAPQFLIIGFGDGFTLVGLQEYF 486

Query: 359 YDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418
           YDQVPDSMRSLGIAFYLSVIGAA+FLSS LITVVDH+T KSG+SWFGKD+NSSRLDKFYW
Sbjct: 487 YDQVPDSMRSLGIAFYLSVIGAASFLSSMLITVVDHITKKSGKSWFGKDLNSSRLDKFYW 546

Query: 419 LLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQG 455
           LLAA+   NLF++V VARRYSYKNVQ+ +AVADCY+G
Sbjct: 547 LLAAIATVNLFLFVFVARRYSYKNVQK-LAVADCYEG 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460405|ref|XP_004147936.1| PREDICTED: putative peptide/nitrate transporter At2g37900-like [Cucumis sativus]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/468 (71%), Positives = 399/468 (85%), Gaps = 7/468 (1%)

Query: 1   MSWFVPSLRACHAD--MCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHA 58
           MS  VPS + C ++  +CL+PRK H++VFFLAIYLISIGTGGHKPSLESFGADQFDDDH+
Sbjct: 135 MSALVPSFKPCDSNDHVCLQPRKTHQIVFFLAIYLISIGTGGHKPSLESFGADQFDDDHS 194

Query: 59  EERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRP 118
           +ERKKKMS+FNWWN GLCSGLLLGVT++VY+Q+HVSWGAA V +  +M +S+ IFI GRP
Sbjct: 195 KERKKKMSYFNWWNFGLCSGLLLGVTIIVYIQDHVSWGAAYVTLMTMMVISVFIFIAGRP 254

Query: 119 FYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVV--AKGRLLCHTKNLEF 176
           FYRYR P GSPLTP+LQVLVAAI KR LPHPS+P  L E+PK    A GR LCHT+ L+F
Sbjct: 255 FYRYRQPSGSPLTPLLQVLVAAICKRKLPHPSNPSLLHEFPKTTNNAHGRFLCHTQKLKF 314

Query: 177 LDKAAILEDYE-TPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFI 235
           LDKAA+ E+    P ++QSPWR+A VTKVEEMKL+LN+IP+WL++LPFG+++AQ++TFFI
Sbjct: 315 LDKAAVYEENNGGPAEKQSPWRLATVTKVEEMKLILNMIPIWLSTLPFGVTIAQTSTFFI 374

Query: 236 KQAATMNREIGNGFLI-PPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQR 294
           KQA+ MNR+IG+G LI PP ++F L A+GMI+S+T Y+K+LVP+LRR TGNERGI ILQR
Sbjct: 375 KQASNMNRKIGDGGLILPPTTIFCLAAIGMIVSITIYDKVLVPMLRRTTGNERGINILQR 434

Query: 295 IGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGL 354
           IGIGMLF IATM+ AALVE KRL VV ENP  GSL+MSVFWLAPQ +I G  DGF +VGL
Sbjct: 435 IGIGMLFVIATMIIAALVEHKRLQVVAENPKTGSLTMSVFWLAPQFLIIGFGDGFTIVGL 494

Query: 355 QEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGR-SWFGKDMNSSRL 413
           QEYFYDQVPDSMRSLGIAFYLSVIGA +FLSSFLITVVD +T +SG  SWFGK++N+SRL
Sbjct: 495 QEYFYDQVPDSMRSLGIAFYLSVIGAGSFLSSFLITVVDKITGRSGHTSWFGKNLNTSRL 554

Query: 414 DKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQGDRSRSH 461
           DKFYWLLAA+ AANL VYV++ARRYSYKNVQR VAVADCY+ ++ R +
Sbjct: 555 DKFYWLLAAVSAANLCVYVLIARRYSYKNVQRRVAVADCYEDEKGREN 602

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530638|ref|XP_004172301.1| PREDICTED: putative peptide/nitrate transporter At2g37900-like, partial [Cucumis sativus]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/468 (71%), Positives = 399/468 (85%), Gaps = 7/468 (1%)

Query: 1   MSWFVPSLRACHAD--MCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHA 58
           MS  VPS + C ++  +CL+PRK H++VFFLAIYLISIGTGGHKPSLESFGADQFDDDH+
Sbjct: 7   MSALVPSFKPCDSNDHVCLQPRKTHQIVFFLAIYLISIGTGGHKPSLESFGADQFDDDHS 66

Query: 59  EERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRP 118
           +ERKKKMS+FNWWN GLCSGLLLGVT++VY+Q+HVSWGAA V +  +M +S+ IFI GRP
Sbjct: 67  KERKKKMSYFNWWNFGLCSGLLLGVTIIVYIQDHVSWGAAYVTLMTMMVISVFIFIAGRP 126

Query: 119 FYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVV--AKGRLLCHTKNLEF 176
           FYRYR P GSPLTP+LQVLVAAI KR LPHPS+P  L E+PK    A GR LCHT+ L+F
Sbjct: 127 FYRYRQPSGSPLTPLLQVLVAAICKRKLPHPSNPSLLHEFPKTTNNAHGRFLCHTQKLKF 186

Query: 177 LDKAAILEDYE-TPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFI 235
           LDKAA+ E+    P ++QSPWR+A VTKVEEMKL+LN+IP+WL++LPFG+++AQ++TFFI
Sbjct: 187 LDKAAVYEENNGGPAEKQSPWRLATVTKVEEMKLILNMIPIWLSTLPFGVTIAQTSTFFI 246

Query: 236 KQAATMNREIGNGFLI-PPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQR 294
           KQA+ MNR+IG+G LI PP ++F L A+GMI+S+T Y+K+LVP+LRR TGNERGI ILQR
Sbjct: 247 KQASNMNRKIGDGGLILPPTTIFCLAAIGMIVSITIYDKVLVPMLRRTTGNERGINILQR 306

Query: 295 IGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGL 354
           IGIGMLF IATM+ AALVE KRL VV ENP  GSL+MSVFWLAPQ +I G  DGF +VGL
Sbjct: 307 IGIGMLFVIATMIIAALVEHKRLQVVAENPKTGSLTMSVFWLAPQFLIIGFGDGFTIVGL 366

Query: 355 QEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGR-SWFGKDMNSSRL 413
           QEYFYDQVPDSMRSLGIAFYLSVIGA +FLSSFLITVVD +T +SG  SWFGK++N+SRL
Sbjct: 367 QEYFYDQVPDSMRSLGIAFYLSVIGAGSFLSSFLITVVDKITGRSGHTSWFGKNLNTSRL 426

Query: 414 DKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQGDRSRSH 461
           DKFYWLLAA+ AANL VYV++ARRYSYKNVQR VAVADCY+ ++ R +
Sbjct: 427 DKFYWLLAAVSAANLCVYVLIARRYSYKNVQRRVAVADCYEDEKGREN 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496092|ref|XP_003516904.1| PREDICTED: probable peptide/nitrate transporter At3g53960-like [Glycine max]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/458 (71%), Positives = 390/458 (85%), Gaps = 4/458 (0%)

Query: 1   MSWFVPSLRAC-HADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAE 59
           +SWF+P  + C H   C EPR++HEVVFFL IYLIS+GTGGHKPSLESFGADQFDD++A+
Sbjct: 127 LSWFIPGFKPCDHTSTCTEPRRIHEVVFFLGIYLISVGTGGHKPSLESFGADQFDDNNAK 186

Query: 60  ERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPF 119
           ER++KMSFFNWWNSGLCSG++LGVTV+VYVQ+HV+WG AD+I+T VMAVSLLIF+IGR  
Sbjct: 187 ERRQKMSFFNWWNSGLCSGIILGVTVIVYVQDHVNWGVADIILTGVMAVSLLIFLIGRSS 246

Query: 120 YRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKG-RLLCHTKNLEFLD 178
           YRYR P GSPLTPMLQVLVAAI+KR LP+PS+P QL+E  K      R L HTK L+FLD
Sbjct: 247 YRYRTPIGSPLTPMLQVLVAAISKRKLPYPSNPTQLYEVSKSEGNNERFLAHTKKLKFLD 306

Query: 179 KAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA 238
           KAAI+E+     ++QSPWR+A VTKVEE+KL++N+IP+W+ +LPFGI  +Q++TFFIKQ 
Sbjct: 307 KAAIIENEGNIAEKQSPWRLATVTKVEELKLIINMIPIWVFTLPFGICASQTSTFFIKQG 366

Query: 239 ATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIG 298
           A MNR+IGNGF++PPAS+F L A+GMI+SV  Y+K+LVPVLR+ TGNERGI ILQRIGIG
Sbjct: 367 AIMNRKIGNGFVVPPASIFTLAAIGMIVSVIIYDKLLVPVLRKLTGNERGINILQRIGIG 426

Query: 299 MLFSIATMVFAALVEKKRLGVVEEN-PTKGSLSMSVFWLAPQSIISGVADGFALVGLQEY 357
           M+FS+ TM+ AALVEKKRL  VE N P KGSLSMS  WLAPQ +I G  DGFALVGLQEY
Sbjct: 427 MIFSVITMIAAALVEKKRLEAVEMNGPLKGSLSMSALWLAPQFLIIGFGDGFALVGLQEY 486

Query: 358 FYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFY 417
           FYDQVPDSMRSLGIA YLSVIGAA+FLSS LIT+VDHVT KSG+SW GKD+NSSRLDKFY
Sbjct: 487 FYDQVPDSMRSLGIALYLSVIGAASFLSSLLITIVDHVTGKSGKSWIGKDLNSSRLDKFY 546

Query: 418 WLLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQG 455
           WLLAA+   NLFV+V  ARRY+YKNVQ+ VAVADCY+G
Sbjct: 547 WLLAAITTLNLFVFVFFARRYNYKNVQK-VAVADCYEG 583

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586949|ref|XP_002534074.1| Peptide transporter, putative [Ricinus communis] gi|223525891|gb|EEF28309.1| Peptide transporter, putative [Ricinus communis]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/423 (75%), Positives = 376/423 (88%), Gaps = 1/423 (0%)

Query: 2   SWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEER 61
           S FVPSL+AC A++C EPRKVHEVVFFLA+YLISIGTGGHKP+LESFGADQFDDDH EER
Sbjct: 129 SQFVPSLKACDAELCHEPRKVHEVVFFLALYLISIGTGGHKPALESFGADQFDDDHNEER 188

Query: 62  KKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYR 121
           K KMS+FNWWN GLCSGLLLGVT++VY+Q+H+SWG A +I+T V+A+SL +FIIGRPFYR
Sbjct: 189 KNKMSYFNWWNFGLCSGLLLGVTIIVYIQDHISWGVAYIILTAVLALSLAVFIIGRPFYR 248

Query: 122 YRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKV-VAKGRLLCHTKNLEFLDKA 180
           YRVP GSPLTPMLQV+VAA  KRNLP+PS+P +L+E P++ + KGRLLCHT+ L FLDKA
Sbjct: 249 YRVPTGSPLTPMLQVIVAAFKKRNLPYPSNPAELYEVPELQIHKGRLLCHTQKLRFLDKA 308

Query: 181 AILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAAT 240
           AI+ED     ++QSPWR+A+VTKVEE+KL+LN+IP+WL +LPFGISVAQ+ TFFIKQ+ T
Sbjct: 309 AIMEDNGNGAEKQSPWRLASVTKVEEVKLILNMIPIWLVTLPFGISVAQTATFFIKQSTT 368

Query: 241 MNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGML 300
           + R +GNGFLIPPASV+ + A+GMIISVT YEKILVP+LRR TGNERGI+ILQRIGIGM+
Sbjct: 369 LGRNVGNGFLIPPASVYAICAIGMIISVTVYEKILVPILRRVTGNERGIKILQRIGIGMV 428

Query: 301 FSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYD 360
           FS+A MV +ALVE+KRL VVE+N  KGSL+MSVFWL PQ +I G+ DGF +VGLQEYFYD
Sbjct: 429 FSVAAMVTSALVERKRLSVVEKNGAKGSLTMSVFWLGPQFLIFGIGDGFTIVGLQEYFYD 488

Query: 361 QVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLL 420
           QVPDSMRSLGIAFYLSVIGAANFLSS LITVVDHVT K GRSWFGKD+NSSRLD FYWLL
Sbjct: 489 QVPDSMRSLGIAFYLSVIGAANFLSSVLITVVDHVTKKYGRSWFGKDLNSSRLDNFYWLL 548

Query: 421 AAL 423
           AA+
Sbjct: 549 AAM 551

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505729|ref|XP_003623153.1| Peptide transporter PTR3-B [Medicago truncatula] gi|355498168|gb|AES79371.1| Peptide transporter PTR3-B [Medicago truncatula]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/464 (68%), Positives = 383/464 (82%), Gaps = 8/464 (1%)

Query: 1   MSWFVPSLRAC-HADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAE 59
           +SWF+PSL+ C H   C EPRK+HEVVFFLAIYLISI TGGHKPSLESFGADQFD+DH E
Sbjct: 122 LSWFLPSLKPCDHTTTCNEPRKIHEVVFFLAIYLISIATGGHKPSLESFGADQFDEDHVE 181

Query: 60  ERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPF 119
           ERK+KMSFFNWWN  LCSGL+LGVT++VY+Q++++WGAAD+I T VMA+SLLIFIIGRPF
Sbjct: 182 ERKQKMSFFNWWNCALCSGLILGVTLIVYIQDNINWGAADIIFTGVMALSLLIFIIGRPF 241

Query: 120 YRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVA-KGRLLCHTKNLEFLD 178
           YRYRVP GSPLTPMLQVLVAA +KR LP+PS+PDQL+E  K    K + LCHTK L FLD
Sbjct: 242 YRYRVPSGSPLTPMLQVLVAAFSKRKLPYPSNPDQLYEVSKSHGNKRKFLCHTKKLRFLD 301

Query: 179 KAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA 238
           KAAI+E+    +++QSPW++  VT VEEMKL++N+IP+W+ ++PFGISVAQ++TFFIKQ+
Sbjct: 302 KAAIIENDGNSIEKQSPWKLTTVTTVEEMKLIINMIPIWVFTIPFGISVAQTSTFFIKQS 361

Query: 239 ATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIG 298
           A MNR+IG  F +PPAS+F + A+GMIISV  Y+KILVP+LR+   NERGI ILQRIG G
Sbjct: 362 AIMNRKIGERFELPPASIFTVAALGMIISVAIYDKILVPMLRKINQNERGINILQRIGFG 421

Query: 299 MLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYF 358
           M F+I TM+ AAL+EKKRL  VE++P      +S+FWLAPQ +I G  DGF LVGLQEYF
Sbjct: 422 MFFTIITMIVAALIEKKRLEAVEKDP------LSIFWLAPQFLIIGFGDGFTLVGLQEYF 475

Query: 359 YDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418
           YDQVPDSMRSLGIAFYLSVIGAANF+SS LIT+VDH+T K+G+SWFGKD+NSSRLDKFYW
Sbjct: 476 YDQVPDSMRSLGIAFYLSVIGAANFISSVLITIVDHITKKNGKSWFGKDLNSSRLDKFYW 535

Query: 419 LLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQGDRSRSHV 462
           LLAA+   NLF++V  ARRYSYKNVQ+   + D  +G      V
Sbjct: 536 LLAAITTVNLFLFVFFARRYSYKNVQKVAVIDDSCKGKNDYGSV 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440516|ref|XP_002272737.1| PREDICTED: probable peptide/nitrate transporter At3g53960 [Vitis vinifera]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/458 (69%), Positives = 364/458 (79%), Gaps = 53/458 (11%)

Query: 1   MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEE 60
           MS  VPSLR C A  CLEPRKVHEVVFFLAIYLISIGTGGHKP+LESFGADQFDDD++EE
Sbjct: 122 MSRVVPSLRPCGAGTCLEPRKVHEVVFFLAIYLISIGTGGHKPALESFGADQFDDDYSEE 181

Query: 61  RKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFY 120
           RKKKMS+FNWWN GLCSGLL+GVTV+VYVQ+HVSWG AD+I+++VMAV+++IF +GRPFY
Sbjct: 182 RKKKMSYFNWWNFGLCSGLLIGVTVIVYVQDHVSWGVADIILSVVMAVTIVIFCVGRPFY 241

Query: 121 RYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKA 180
           RYR P GSPLTP+LQVLVAAIAKR LP+P +P QL+E                       
Sbjct: 242 RYRKPMGSPLTPLLQVLVAAIAKRKLPYPPNPSQLYE----------------------- 278

Query: 181 AILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAAT 240
                                       L+LN+IP+WL+ LPFGI VAQ++TFFIKQ AT
Sbjct: 279 ----------------------------LILNMIPIWLSCLPFGICVAQASTFFIKQGAT 310

Query: 241 MNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGML 300
           MNR+I N FLIP AS++ L A+GMI SVT YEKILVPVLR+ATG ERGI+ILQRIGIGM+
Sbjct: 311 MNRKIDNDFLIPAASIYSLAAIGMIASVTIYEKILVPVLRQATGTERGIKILQRIGIGMV 370

Query: 301 FSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYD 360
           FS+  M+ AALVEKKRLGVVE+NP  GSLSMSVFWLAPQ +I G+ DGF+LVGLQEYFYD
Sbjct: 371 FSMIGMIVAALVEKKRLGVVEKNPQTGSLSMSVFWLAPQFVILGIGDGFSLVGLQEYFYD 430

Query: 361 QVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLL 420
           QVPDSMRSLGIAFYLSVIGAANFLSS LIT+VDHVT+K G+SWFG D+N+SRLDKFYWLL
Sbjct: 431 QVPDSMRSLGIAFYLSVIGAANFLSSLLITIVDHVTEKHGKSWFGVDLNTSRLDKFYWLL 490

Query: 421 AALVAANLFVYVVVARRYSYKNVQRS--VAVADCYQGD 456
           A +   NL+VYV+VARRYSYKNVQRS  VAVADCY GD
Sbjct: 491 AIMNMLNLWVYVIVARRYSYKNVQRSAAVAVADCYNGD 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
TAIR|locus:2084500	602	AT3G53960 [Arabidopsis thalian	0.976	0.749	0.584	2e-143
TAIR|locus:2065568	575	AT2G37900 [Arabidopsis thalian	0.950	0.763	0.597	1.4e-142
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.952	0.771	0.357	2.5e-74
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	0.917	0.763	0.352	2.5e-74
TAIR|locus:2061843	583	AT2G40460 [Arabidopsis thalian	0.932	0.739	0.377	3.1e-74
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.863	0.676	0.381	9.6e-73
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.943	0.764	0.350	1.8e-71
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.878	0.697	0.350	6.1e-71
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.945	0.747	0.345	3.3e-70
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.948	0.747	0.329	1.4e-69

TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)]

 Score = 1402 (498.6 bits), Expect = 2.0e-143, P = 2.0e-143
 Identities = 267/457 (58%), Positives = 332/457 (72%)

Query:     1 MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEE 60
             +SWF+P L+ACH DMC+EPRK HE+ FF+AIYLISIGTGGHKPSLESFGADQF+D H EE
Sbjct:   128 LSWFIPGLKACHEDMCVEPRKAHEIAFFIAIYLISIGTGGHKPSLESFGADQFEDGHPEE 187

Query:    61 RKKKMSFFNWWNSXXXXXXXXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRPFY 120
             RK KMS+FNWWN+                ++ + WG A +I+TIVMA S  IF IG+PFY
Sbjct:   188 RKMKMSYFNWWNAGLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFY 247

Query:   121 RYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYP-KVVAKGRLLCHTKNLEFLDK 179
             RYR P GSPLTPMLQV VAAIAKRNLP PSD   L E   +   KGRLL  +KNL+FLDK
Sbjct:   248 RYRAPSGSPLTPMLQVFVAAIAKRNLPCPSDSSLLHELTNEEYTKGRLLSSSKNLKFLDK 307

Query:   180 AAILEDYE--TPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQ 237
             AA++ED    T  ++QSPWR+A VTKVEE+KL++N+IP+W  +L FG+   QS+T FIKQ
Sbjct:   308 AAVIEDRNENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQ 367

Query:   238 AATMNREI-GNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXXXX 296
             A  M+R I G  F++PPAS+F L A+ +II+VT YEK+LVP+LRRATGNE          
Sbjct:   368 AIIMDRHITGTSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRATGNERGISILQRIG 427

Query:   297 XXMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQE 356
               M+FS+  M+ AAL+EKKRL   +E+    ++++S  WLAPQ ++ GVAD F LVGLQE
Sbjct:   428 VGMVFSLFAMIIAALIEKKRLDYAKEHHMNKTMTLSAIWLAPQFLVLGVADAFTLVGLQE 487

Query:   357 YFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDK-SGRSWFGKDMNSSRLDK 415
             YFYDQVPDSMRSLGIAFYLSV+GAA+F+++ LITV DH+ ++ SG+ WFGKD+NSSRLD+
Sbjct:   488 YFYDQVPDSMRSLGIAFYLSVLGAASFVNNLLITVSDHLAEEISGKGWFGKDLNSSRLDR 547

Query:   416 FYWXXXXXXXXXXXXXXXXXRRYSYKNVQRSVAV-AD 451
             FYW                  RY+YK VQ S+AV AD
Sbjct:   548 FYWMLAALTAANICCFVIVAMRYTYKTVQPSLAVVAD 584

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)]

 Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
 Identities = 269/450 (59%), Positives = 329/450 (73%)

Query:     1 MSWFVPSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEE 60
             MSWF+P L+ CH ++C+EPRK HEV FF+AIYLISIGTGGHKPSLESFGADQFDDDH EE
Sbjct:   129 MSWFIPGLKPCHQEVCVEPRKAHEVAFFIAIYLISIGTGGHKPSLESFGADQFDDDHVEE 188

Query:    61 RKKKMSFFNWWNSXXXXXXXXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRPFY 120
             RK KMSFFNWWN                 ++ V WG A +I+T+VMA+SL+IF IG+PFY
Sbjct:   189 RKMKMSFFNWWNVSLCAGILTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFY 248

Query:   121 RYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKV-VAKGRLLCHTKNLEFLDK 179
             RYR P GSPLTP+LQV VAAIAKRNLP+PSDP  L E  K     GRLLCHT++L+FLDK
Sbjct:   249 RYRTPSGSPLTPILQVFVAAIAKRNLPYPSDPSLLHEVSKTEFTSGRLLCHTEHLKFLDK 308

Query:   180 AAILEDYETPV--DQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQ 237
             AAI+ED + P+  ++QSPWR+  +TKVEE KL++NVIP+W ++L FGI   Q++TFFIKQ
Sbjct:   309 AAIIED-KNPLALEKQSPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQ 367

Query:   238 AATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXXXXX 297
             A TM+R IG GF +PPAS+F LTA+ +IIS+T YEK+LVP+LR  T N+           
Sbjct:   368 AITMDRHIG-GFTVPPASMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGT 426

Query:   298 XMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEY 357
              M+FS+ TM+ AALVEK+RL     + T  +  MSV WLAPQ ++ G AD F LVGLQEY
Sbjct:   427 GMIFSLITMIIAALVEKQRL-----DRTNNNKPMSVIWLAPQFMVIGFADAFTLVGLQEY 481

Query:   358 FYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDK-SGRSWFGKDMNSSRLDKF 416
             FY QVPDSMRSLGIAFYLSVIGAA+FL++ LIT VD + +  SG+SWFGKD+NSSRLD+F
Sbjct:   482 FYHQVPDSMRSLGIAFYLSVIGAASFLNNLLITAVDTLAENFSGKSWFGKDLNSSRLDRF 541

Query:   417 YWXXXXXXXXXXXXXXXXXRRYSYKNVQRS 446
             YW                 +R  YK+VQ S
Sbjct:   542 YWFLAGVIAANICVFVIVAKRCPYKSVQPS 571

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 161/450 (35%), Positives = 245/450 (54%)

Query:     1 MSWFVPSLRA--CHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHA 58
             +S  VP L+   C+AD C  P      VFF+A+Y+I++GTGG KP + SFGADQFD++  
Sbjct:   115 LSASVPGLKPGNCNADTC-HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDE 173

Query:    59 EERKKKMSFFNWWNSXXXXXXXXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRP 118
              E+ KK SFFNW+                  Q +V WG    + T+ M +++  F  G  
Sbjct:   174 NEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSR 233

Query:   119 FYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVA--KG-RLLCHTKNLE 175
             FYR + P GSPLT + QV+VAA  K ++  P D   LFE     +  KG R L HT NL+
Sbjct:   234 FYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLK 293

Query:   176 FLDKAAILEDYETPVDQQ-SPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFF 234
             F DKAA+    ++  D + +PWR+ +VT+VEE+K ++ ++PVW   + F    +Q +T F
Sbjct:   294 FFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMF 353

Query:   235 IKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXX 294
             + Q  TM++ +G  F IP AS+     V ++     Y++ ++P+ R+ T NE        
Sbjct:   354 VLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQR 413

Query:   295 XXXXMLFSIATMVFAALVEKKRLGVVEENPT--KGSLSMSVFWLAPQSIISGVADGFALV 352
                 ++ SI  M+ A ++E  RL  V+ +    +  + MS+FW  PQ ++ G A+ F  +
Sbjct:   414 MGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFI 473

Query:   353 GLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGR-SWFGKDMNSS 411
             G  E+FYDQ PD+MRSL  A  L+ +   N+LS+ L+TVV  +T K+G+  W   ++N  
Sbjct:   474 GQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRG 533

Query:   412 RLDKFYWXXXXXXXXXXXXXXXXXRRYSYK 441
              LD F++                 +RY YK
Sbjct:   534 HLDYFFYLLATLSFLNFLVYLWISKRYKYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 154/437 (35%), Positives = 243/437 (55%)

Query:    20 RKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSXXXXXX 79
             R++ E VFF+A+Y++++G GGHKP + +F ADQF + +AEE+  K SFFN+W        
Sbjct:   110 RRMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLAS 169

Query:    80 XXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVA 139
                       QE VSW     II   + ++++IF+IG P YR +VP GSP T + QV+VA
Sbjct:   170 SIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVA 229

Query:   140 AIAKRNLPHPSDPDQL-FEYP---KVVAKGR----LLCHTKNLEFLDKAAILEDYETPVD 191
             A+ K  L        L +E     K+ +       LL  T    FLDKA I+++ +   +
Sbjct:   230 ALKKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKN 289

Query:   192 QQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLI 251
             + +PWR+  V +VEE+KL+L +IP+W++ + F  ++ Q  TFF+KQ + M+R IGN F I
Sbjct:   290 R-NPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTI 348

Query:   252 PPASVFGLTAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXXXXXXMLFSIATMVFAAL 311
             PPA+   +  V ++I +  Y+++ VP++R+ T +             +  +   MV   L
Sbjct:   349 PPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGL 408

Query:   312 VEKKRLGVVEEN----PTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMR 367
             VE KRL V  ++      K  + MS  WL PQ I+ G+ D F +VG+QE FYDQ+P++MR
Sbjct:   409 VEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMR 468

Query:   368 SLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWXXXXXXXXX 427
             S+G A ++SV+G  +F+S+ +I+ V  ++   G  W   ++N + LD +YW         
Sbjct:   469 SIGAAIFISVVGVGSFVSTGIISTVQTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVS 528

Query:   428 XXXXXXXXRRYSYKNVQ 444
                       + YK +Q
Sbjct:   529 LCFYLFIANHFLYKKLQ 545

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 171/453 (37%), Positives = 244/453 (53%)

Query:     1 MSWFVPSLR-ACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAE 59
             M+  V SLR  C   +C +   +    F++++Y I+IG GG KP++ +FGADQFD    E
Sbjct:   115 MAVTVKSLRPTCENGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIE 174

Query:    60 ERKKKMSFFNWWNSXXXXXXXXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRPF 119
             E+K+K+SFFNWW                  QE++ WG    I T+ + VSL++F IG PF
Sbjct:   175 EKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPF 234

Query:   120 YRYRVPKGSPLTP-MLQVLVAAIAKRNLPHPSDPDQLFE----YPKVVAKGRLLCHTKNL 174
             YR++V K   L   ++QV +AA   R L  P D  +L+E    Y K   K ++  HT   
Sbjct:   235 YRHKVIKTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVH-HTPVF 293

Query:   175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFF 234
              FLDKAAI      P           VTKVE  K VL +I +WL +L      AQ  T F
Sbjct:   294 RFLDKAAIKTSSRVP---------CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLF 344

Query:   235 IKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXX 294
             +KQ  T++R+IG+ F IP AS+     + M++SV  Y++  VP +R+ TGN         
Sbjct:   345 VKQGTTLDRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQR 404

Query:   295 XXXXMLFSIATMVFAALVEKKRLGVVEE----NPTKGSLSMSVFWLAPQSIISGVADGFA 350
                     I  +  A+ VE KR+ V++E    +PT+  + MS+FWL PQ  + G+ D F 
Sbjct:   405 LGVGFAIQIVAIAIASAVEVKRMRVIKEFHITSPTQ-VVPMSIFWLLPQYSLLGIGDVFN 463

Query:   351 LVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSG-RSWFGKDMN 409
              +GL E+FYDQ P+ M+SLG  F+ S IG  NFL+SFL+T++D +T K G +SW G ++N
Sbjct:   464 AIGLLEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLN 523

Query:   410 SSRLDKFYWXXXXXXXXXXXXXXXXXRRYSYKN 442
              SRLD +Y                   +Y YK+
Sbjct:   524 DSRLDYYYGFLVVISIVNMGLFVWAASKYVYKS 556

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 157/412 (38%), Positives = 235/412 (57%)

Query:    13 ADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWN 72
             A +C     V   VFF  +YLI++GTGG KP + SFGADQFDD    ER +K SFFNW+ 
Sbjct:   160 AALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFY 219

Query:    73 SXXXXXXXXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTP 132
                              QE+V WG   +I T+ M VS+  F IG P YR++ P GSP+T 
Sbjct:   220 FSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITR 279

Query:   133 MLQVLVAAIAKRNLPHPSDPDQLFEYPK---VVAKGRLLCHTKNLEFLDKAAILEDYETP 189
             + QVLVAA  K  L  P D   L+E  +   ++A  R + HT   +FLDKAA++ +YE+ 
Sbjct:   280 VCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESK 339

Query:   190 VDQQS-PWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNG 248
                 S PW++  VT+VEE+K ++ + P+W + + + +  +Q +T F++Q  +MNR I   
Sbjct:   340 SGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRII-RS 398

Query:   249 FLIPPASVFGL-TAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXXXXXXMLFSIATMV 307
             F IPPAS FG+   + ++IS+  Y++ LVP +RR TG              +  S+ ++ 
Sbjct:   399 FEIPPAS-FGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIA 457

Query:   308 FAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMR 367
              AA+VE  RL + ++      ++MS+FW  PQ I+ G+A+ F  +G  E+FYD+ PD+MR
Sbjct:   458 AAAIVETVRLQLAQD-----FVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMR 512

Query:   368 SLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRS-WFGKDMNSSRLDKFYW 418
             S+  A  L      ++LSS ++T+V + T   G+  W   D+N   LD F+W
Sbjct:   513 SVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFW 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 156/445 (35%), Positives = 235/445 (52%)

Query:     5 VPSLR-ACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKK 63
             VP L   C  + C         + F+A+YLI++GTGG KP + SFGADQFDD   +E++ 
Sbjct:   120 VPGLTPTCSGETC-HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKES 178

Query:    64 KMSFFNWWNSXXXXXXXXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYR 123
             K SFFNW+                  Q +V WG    + T+ MA++++ F  G  FYR +
Sbjct:   179 KSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQ 238

Query:   124 VPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKV---VAKGRLLCHTKNLEFLDKA 180
              P GSPLT MLQV+VA+  K  +  P D   L+E       +   R L HTK L F DKA
Sbjct:   239 KPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKA 298

Query:   181 AI-LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAA 239
             A+  E       + S W++  VT+VEE+K ++ ++P+W   + F    +Q  T F+ Q  
Sbjct:   299 AVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGN 358

Query:   240 TMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXXXXXXM 299
             T+++ +G  F IP AS+     + ++     Y+K++VP  R+ TG+E            +
Sbjct:   359 TLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGL 418

Query:   300 LFSIATMVFAALVEKKRLGVVEENP--TKGSLSMSVFWLAPQSIISGVADGFALVGLQEY 357
             + SI +MV A ++E  RL  V+ +    + ++ M++FW  PQ  + G A+ F  +G  E+
Sbjct:   419 VISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEF 478

Query:   358 FYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGR-SWFGKDMNSSRLDKF 416
             FYDQ PD+MRSL  A  L+ I   N+LS+FL+T+V  VT   GR  W  K++N+  LD F
Sbjct:   479 FYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYF 538

Query:   417 YWXXXXXXXXXXXXXXXXXRRYSYK 441
             +W                 + Y+YK
Sbjct:   539 FWLLAGLSFLNFLVYLWIAKWYTYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 147/419 (35%), Positives = 234/419 (55%)

Query:     6 PSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKM 65
             P     + + C +   +   VFF A+Y ++IGTGG KP++ + GADQFD    +E+ +K+
Sbjct:   128 PECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKL 187

Query:    66 SFFNWWNSXXXXXXXXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVP 125
             SFFNWW                  Q++V W     + T+ +A+S+ IF++G PFYR+++P
Sbjct:   188 SFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLP 247

Query:   126 KGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVV--AKGRLLCH-TKNLEFLDKAAI 182
              GSP T M +V+VA+  K N P   D     E P +    KG    H T +L FLD+A++
Sbjct:   248 TGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRASL 307

Query:   183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMN 242
                 +T  + +  W +   T+VEE K +L ++PV   +    + +AQ  T F+KQ  T++
Sbjct:   308 ----KTGTNHK--WNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLD 361

Query:   243 REIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXXXXXXMLFS 302
             R++   F IPPAS+ G   + M+IS+  Y+++ V + R+ TGN             ++F 
Sbjct:   362 RKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFH 421

Query:   303 IATMVFAALVEKKRLGVVEEN----PTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYF 358
             I  M+ A++ E+ RL V  ++     T   L +++F L PQ ++ G+AD F  V   E+F
Sbjct:   422 ILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFF 481

Query:   359 YDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFY 417
             YDQ P+SM+SLG ++  + +   NF+SSFL++ V  +T K GR W   ++N SRLD +Y
Sbjct:   482 YDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRLDYYY 540

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 157/454 (34%), Positives = 238/454 (52%)

Query:     1 MSWFVPSLRA--CHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHA 58
             +S  VP+L+   C  D C         +FF  +YLI++GTGG KP + SFGADQFDD  +
Sbjct:   132 LSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDS 191

Query:    59 EERKKKMSFFNWWNSXXXXXXXXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRP 118
              ER +K SFFNW+                  QE+  WG    I T+ M +++  F  G P
Sbjct:   192 RERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTP 251

Query:   119 FYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYP---KVVAKGRLLCHTKNLE 175
              YR++ P GSP+T + QV+VA+  K ++  P D   L+E       +A  R + HT + +
Sbjct:   252 LYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQ 311

Query:   176 FLDKAAILEDYETPV-DQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFF 234
             +LDKAA++ + E+   D  + WR+  VT+VEE+K+++ + P+W + + F    AQ +T F
Sbjct:   312 YLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMF 371

Query:   235 IKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXX 294
             ++Q   MN +IG+ F +PPA++       +II V  Y++ +VP+ R+ TG +        
Sbjct:   372 VQQGRAMNCKIGS-FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQR 430

Query:   295 XXXXMLFSIATMVFAALVEKKRL------GVVEENPTKGSLSMSVFWLAPQSIISGVADG 348
                 +  S+  M  AA+VE  RL      G+VE       + +SV W  PQ  I G A+ 
Sbjct:   431 MGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESG---APVPISVLWQIPQYFILGAAEV 487

Query:   349 FALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRS-WFGKD 407
             F  +G  E+FYDQ PD+MRSL  A  L      N+LSS ++T+V + T ++G+  W   +
Sbjct:   488 FYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDN 547

Query:   408 MNSSRLDKFYWXXXXXXXXXXXXXXXXXRRYSYK 441
             +NS  LD F+W                  RY  K
Sbjct:   548 LNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 149/452 (32%), Positives = 240/452 (53%)

Query:     6 PSLRACHADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKM 65
             P     + + C +   +   VFF A+Y ++IGTGG KP++ + GADQFD+   +++  K 
Sbjct:   128 PKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKH 187

Query:    66 SFFNWWNSXXXXXXXXXXXXXXXXQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVP 125
             SFFNWW                  Q++V W     + T+ +A S+ IF++G   YR+++P
Sbjct:   188 SFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLP 247

Query:   126 KGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKV--VAKGRLLCH-TKNLEFLDKAAI 182
              GSP T M +V+VA++ K   P  SD  + +E P +   +K     H T +L FL++A++
Sbjct:   248 MGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRASL 307

Query:   183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMN 242
                 +T    +  WR+  +T+VEE K +L ++PV   +    + +AQ  T FIKQ  T++
Sbjct:   308 ----KTGSTHK--WRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLD 361

Query:   243 REIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNEXXXXXXXXXXXXMLFS 302
             R + N F IPPAS+ G T   M++S+  Y+++ V  +R+ TGN             M+  
Sbjct:   362 RRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILH 421

Query:   303 IATMVFAALVEKKRLGVVEEN----PTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYF 358
             I  M+ A++ E+ RL V  E+     T   + +S+F L PQ ++ G+AD F  +   E+F
Sbjct:   422 ILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFF 481

Query:   359 YDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418
             YDQ P+SM+SLG ++  + +    F+SS L++ V  +T K GR W   ++N SRLD +Y 
Sbjct:   482 YDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRGWIQNNLNESRLDNYYM 541

Query:   419 XXXXXXXXXXXXXXXXXRRYSYK-NVQRSVAV 449
                              R Y Y+ +V +S  V
Sbjct:   542 FFAVLNLLNFILFLVVIRFYEYRADVTQSANV 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M331	PTR45_ARATH	No assigned EC number	0.6497	0.9718	0.7458	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	462
pfam00854	372	pfam00854, PTR2, POT family	1e-56
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	5e-11
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-05

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  191 bits (487), Expect = 1e-56
 Identities = 103/368 (27%), Positives = 170/368 (46%), Gaps = 30/368 (8%)

Query: 19  PRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSG 78
              V   +F++ +YLI++GTGG KP++ +FGADQFD+     R     FF+W+   + +G
Sbjct: 27  LSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQDPRRD---GFFSWFYFSINAG 83

Query: 79  LLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYR-YRVPKGSPLTPML-QV 136
            L+   +  Y+Q++V +     +  + M ++LL+F++G   Y+    P GSP T  +  +
Sbjct: 84  SLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFI 143

Query: 137 LVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTK---NLEFLDKAAILEDYETPVDQQ 193
           + AA   R L  P D   L+   +   K R +  TK    +  +        +    DQQ
Sbjct: 144 ITAAGKNRKLQLPKDSHWLYWALEKYNK-RSISQTKVHTRVAVIFIPLP--KFWALFDQQ 200

Query: 194 SPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPP 253
                     V  ++ +L ++P+W   +       Q  T  ++Q  TM+R I   F IPP
Sbjct: 201 --------GSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPP 252

Query: 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVE 313
           AS      + ++I +   + ++ P+LR     +RG+ + QR G+GM   I     AA+VE
Sbjct: 253 ASFQSFNPLAVLILLPILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVE 308

Query: 314 KKRLGV-VEENPTKGS--LSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370
            KR         T     + + + W  P+  ISGV     L G  E+  D +P SM SL 
Sbjct: 309 AKRPRYAAALGLTSPGWTVPLFILWSLPELFISGV----GLAGALEFAPDALPSSMMSLW 364

Query: 371 IAFYLSVI 378
                +  
Sbjct: 365 TLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 83/412 (20%), Positives = 156/412 (37%), Gaps = 69/412 (16%)

Query: 23  HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLL-- 80
           H+ +  + + LI++GTGG KP + +FG DQF++     R +  SFF  + +     L   
Sbjct: 84  HDALSLVGLALIALGTGGIKPCVSAFGGDQFEERQLSLRFRFFSFF--YFAINAGSLFST 141

Query: 81  -----LGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQ 135
                L   V  +  +     A  V   I+M ++L++F +G   Y+ + P G+ ++ +++
Sbjct: 142 IITPILRGDVGCFGCQDCFPLAFGV-PGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMK 200

Query: 136 VLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYETPVDQQSP 195
            +V A+ KR     S+                      L +LD AA              
Sbjct: 201 CIVFALKKR-FRTRSE------------------DWPRLHWLDWAA-------------- 227

Query: 196 WRIANVTKVEEMKLVLNV----IPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLI 251
                +  +   K +L V    IP+ +    F        T    QA  M+ ++G  F I
Sbjct: 228 -PKYLIRMIRSTKRLLRVLFLFIPLPMFWALFD-QQGSRWTL---QATRMDGDVG-LFPI 281

Query: 252 PPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAAL 311
            P  +  +  + ++I V  ++ ++ P L +          L+++ +GML +      AAL
Sbjct: 282 QPDQMQAVNPLLVLILVPIFDYVVYPALAKCGTRFTS---LRKMAVGMLLAALAFAVAAL 338

Query: 312 VEKKRLGVVEENPTKGSLSMSVFWLAPQ-SIISGVADGFALVGLQEYFYDQVPDSMRSLG 370
           ++ K    + E P+   + + V       +++SG++    L            D   + G
Sbjct: 339 LQNKINPTLPEEPSASIIFLQVLNTDCTITVVSGISKR-VLPHDV----YLHLDKKNTSG 393

Query: 371 IA-FYLSVIGAANF--LSSFLITVVDHVTDK----SGRSWFGKDMNSSRLDK 415
               + +   A           TV  H  +K          G    ++  DK
Sbjct: 394 DQNLFTTKSSAKACGDTGKLESTVDAHEVEKKIIYVLLGSQGYYQLTAVTDK 445

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 70/380 (18%), Positives = 127/380 (33%), Gaps = 48/380 (12%)

Query: 27  FFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVV 86
            ++ + LI +GTG  KP++ S   + +  D    R    + F     G+  G L+   + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDP-RRDGGFTLF---YMGINIGSLIAPIIT 175

Query: 87  VYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNL 146
             +  +  W     +  + M + L+IF++GR        KG    P    L        L
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV-----KGIGGVPDPNPLSFNFLLPVL 230

Query: 147 PHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYETPVDQQSPWRIA----NVT 202
                   L     V+    LL    N        ++      +        A    +  
Sbjct: 231 ------GGLV----VMILAALLTLLLNQNTFSGVLLVISILIAI-----IYFAEAFRSPK 275

Query: 203 KVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATM-NREIGNGFLIPPASVFGLTA 261
             +E + +L  IP++L ++ F     Q  +     A    NR+I  GF +PPA    L  
Sbjct: 276 VFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNP 334

Query: 262 VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVE 321
             +I+       +   + R         Q    I   +   +A + F  L+         
Sbjct: 335 FFIILFSPILAALWTKLGR------GNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGP 388

Query: 322 ENPTKGSLSMSVFWLAPQSIISGVADGFA-LVGLQEYFYDQVPDSMRSLGIA-FYLSVIG 379
                    +SV+WL    ++    + F   VGL        P +++S  +A ++L+V  
Sbjct: 389 SG------LVSVWWLVLSYVLQSFGELFISPVGL-SMVTKLAPPALKSFIMAMWFLTVAA 441

Query: 380 AANF---LSSFLITVVDHVT 396
                  ++          T
Sbjct: 442 GQTLGGQVAGLTAVTDPAYT 461

Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	462
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	99.44
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.36
PRK03545	390	putative arabinose transporter; Provisional	99.3
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.3
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.23
TIGR00893	399	2A0114 d-galactonate transporter.	99.23
TIGR00900	365	2A0121 H+ Antiporter protein.	99.23
PRK09874	408	drug efflux system protein MdtG; Provisional	99.22
PRK05122	399	major facilitator superfamily transporter; Provisi	99.21
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.2
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.2
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.19
PRK10504	471	putative transporter; Provisional	99.19
PRK10054	395	putative transporter; Provisional	99.19
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.17
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.16
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.16
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.14
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.12
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.12
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.12
PRK11010	491	ampG muropeptide transporter; Validated	99.09
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.08
TIGR00901	356	2A0125 AmpG-related permease.	99.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.06
PRK12382	392	putative transporter; Provisional	99.05
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.04
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.03
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.03
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.98
PRK11043	401	putative transporter; Provisional	98.98
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.95
PRK15011	393	sugar efflux transporter B; Provisional	98.94
PRK11663	434	regulatory protein UhpC; Provisional	98.94
TIGR00895	398	2A0115 benzoate transport.	98.93
PRK09848	448	glucuronide transporter; Provisional	98.93
PRK12307	426	putative sialic acid transporter; Provisional	98.92
PRK03893	496	putative sialic acid transporter; Provisional	98.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.91
PRK09528	420	lacY galactoside permease; Reviewed	98.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.9
TIGR00898	505	2A0119 cation transport protein.	98.9
PRK09705	393	cynX putative cyanate transporter; Provisional	98.89
PRK03633	381	putative MFS family transporter protein; Provision	98.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.88
PRK11902	402	ampG muropeptide transporter; Reviewed	98.87
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.84
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.82
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.79
PRK10642	490	proline/glycine betaine transporter; Provisional	98.77
TIGR00891	405	2A0112 putative sialic acid transporter.	98.76
PRK10091	382	MFS transport protein AraJ; Provisional	98.76
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.73
PF13347	428	MFS_2: MFS/sugar transport protein	98.72
PRK09669	444	putative symporter YagG; Provisional	98.71
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.7
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.7
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.7
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.7
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.7
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.69
PRK03699	394	putative transporter; Provisional	98.69
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.68
PRK09952	438	shikimate transporter; Provisional	98.64
PRK15075	434	citrate-proton symporter; Provisional	98.64
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.63
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.63
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.62
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.62
PLN00028	476	nitrate transmembrane transporter; Provisional	98.61
KOG2532	466	consensus Permease of the major facilitator superf	98.61
PRK10429	473	melibiose:sodium symporter; Provisional	98.59
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.57
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.54
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.51
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.46
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.38
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.35
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.35
TIGR00805	633	oat sodium-independent organic anion transporter.	98.26
PRK11462	460	putative transporter; Provisional	98.19
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.15
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.14
PRK10133	438	L-fucose transporter; Provisional	98.13
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.09
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.09
PRK03545	390	putative arabinose transporter; Provisional	98.03
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.98
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.94
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.93
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.91
COG2211	467	MelB Na+/melibiose symporter and related transport	97.88
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.87
TIGR00893	399	2A0114 d-galactonate transporter.	97.87
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.86
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.86
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.84
PRK10054	395	putative transporter; Provisional	97.81
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.8
PRK11663	434	regulatory protein UhpC; Provisional	97.77
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.76
TIGR00900	365	2A0121 H+ Antiporter protein.	97.73
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.73
PRK10091	382	MFS transport protein AraJ; Provisional	97.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.68
TIGR00891	405	2A0112 putative sialic acid transporter.	97.68
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.67
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.65
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.64
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.63
TIGR00895	398	2A0115 benzoate transport.	97.61
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.6
PRK03699	394	putative transporter; Provisional	97.6
KOG2533	495	consensus Permease of the major facilitator superf	97.58
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.57
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.56
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.53
PRK03633	381	putative MFS family transporter protein; Provision	97.52
PRK12307	426	putative sialic acid transporter; Provisional	97.5
PRK09874	408	drug efflux system protein MdtG; Provisional	97.49
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.48
KOG3762	618	consensus Predicted transporter [General function	97.48
PTZ00207	591	hypothetical protein; Provisional	97.48
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.47
PRK09705	393	cynX putative cyanate transporter; Provisional	97.46
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.46
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.44
KOG2615	451	consensus Permease of the major facilitator superf	97.43
KOG0569	485	consensus Permease of the major facilitator superf	97.42
TIGR00805	633	oat sodium-independent organic anion transporter.	97.42
PRK12382	392	putative transporter; Provisional	97.4
PRK10504	471	putative transporter; Provisional	97.38
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.36
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.36
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.36
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.34
PRK05122	399	major facilitator superfamily transporter; Provisi	97.34
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.33
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.32
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.29
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.25
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.24
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.24
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.23
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.22
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.21
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.2
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.2
PRK03893	496	putative sialic acid transporter; Provisional	97.18
TIGR00898	505	2A0119 cation transport protein.	97.15
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.13
KOG2533	495	consensus Permease of the major facilitator superf	97.12
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.11
PRK10133	438	L-fucose transporter; Provisional	97.1
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.08
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.08
PRK10489	417	enterobactin exporter EntS; Provisional	97.07
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.06
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.06
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.05
TIGR00901	356	2A0125 AmpG-related permease.	97.03
KOG0254	513	consensus Predicted transporter (major facilitator	97.02
PRK11010	491	ampG muropeptide transporter; Validated	96.98
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.97
PRK11043	401	putative transporter; Provisional	96.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.92
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.8
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.79
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.76
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.74
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.7
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.7
PRK11902	402	ampG muropeptide transporter; Reviewed	96.62
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.59
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.5
KOG3626	735	consensus Organic anion transporter [Secondary met	96.5
PRK10642	490	proline/glycine betaine transporter; Provisional	96.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.44
PLN00028	476	nitrate transmembrane transporter; Provisional	96.38
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.35
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.29
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.27
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.2
KOG2532	466	consensus Permease of the major facilitator superf	96.19
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.14
KOG3626	735	consensus Organic anion transporter [Secondary met	96.09
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.01
PRK15011	393	sugar efflux transporter B; Provisional	95.84
COG2270	438	Permeases of the major facilitator superfamily [Ge	95.84
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.76
PRK10406	432	alpha-ketoglutarate transporter; Provisional	95.73
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.69
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.66
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.66
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.66
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.61
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.23
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.11
PRK15075	434	citrate-proton symporter; Provisional	95.08
PRK09952	438	shikimate transporter; Provisional	94.86
PRK11462	460	putative transporter; Provisional	94.85
KOG0254	513	consensus Predicted transporter (major facilitator	94.77
PTZ00207	591	hypothetical protein; Provisional	94.63
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	94.34
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	94.26
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	94.21
KOG2615	451	consensus Permease of the major facilitator superf	94.17
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.08
PRK09669	444	putative symporter YagG; Provisional	93.66
PRK09528	420	lacY galactoside permease; Reviewed	93.46
KOG2325	488	consensus Predicted transporter/transmembrane prot	93.43
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	93.34
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	93.28
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	93.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	92.89
PRK10429	473	melibiose:sodium symporter; Provisional	92.39
PF13347	428	MFS_2: MFS/sugar transport protein	92.22
KOG2816	463	consensus Predicted transporter ADD1 (major facili	92.03
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	91.54
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	90.85
KOG2563	480	consensus Permease of the major facilitator superf	90.48
PRK09848	448	glucuronide transporter; Provisional	89.81
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	89.13
KOG0569	485	consensus Permease of the major facilitator superf	88.91
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	88.02
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	87.4
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	85.43
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	83.69
COG3202	509	ATP/ADP translocase [Energy production and convers	83.57
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	82.89
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	81.43
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	81.39

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-68  Score=559.41  Aligned_cols=440  Identities=41%  Similarity=0.730  Sum_probs=392.4

Q ss_pred             CcccccCcCC--C--C--CCCCCCCCcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHH
Q 012514            1 MSWFVPSLRA--C--H--ADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSG   74 (462)
Q Consensus         1 ~~~~~~~~~~--c--~--~~~c~~~~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~   74 (462)
                      +++++|+++|  |  .  +..|..++..+...++.+|.++++|+|++|||+.++++||||+.++++++.+.++|||+|+.
T Consensus       123 ~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~  202 (571)
T KOG1237|consen  123 LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFS  202 (571)
T ss_pred             HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHH
Confidence            3689999999  6  2  25799999999999999999999999999999999999999988887777778999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCc
Q 012514           75 LCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQ  154 (462)
Q Consensus        75 iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~  154 (462)
                      +|+|++++..+..|+|++.||.++|+++++.|++++++|+.+++.|++++|.|+|+..+.+|+.++.++++...+.+++.
T Consensus       203 ~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~  282 (571)
T KOG1237|consen  203 QNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE  282 (571)
T ss_pred             HHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887666544322


Q ss_pred             cccccccccccccccccccchhhhHhhhhcCCCC-CCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHH
Q 012514          155 LFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYET-PVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTF  233 (462)
Q Consensus       155 l~~~~~~~~~~~~l~~~~~~~~ld~a~i~~~~~~-~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~  233 (462)
                      + +.+  ........+++..+++|+|++..+.+. .+...+||++|+.++|||+|.++|++|++...++||+++.|+.+.
T Consensus       283 ~-~~~--~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~  359 (571)
T KOG1237|consen  283 L-YYD--CTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTF  359 (571)
T ss_pred             c-ccc--ccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhh
Confidence            2 110  011122334567889999998765322 123457899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 012514          234 FIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVE  313 (462)
Q Consensus       234 ~~~qa~~~~~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~  313 (462)
                      ++.|+.+||++++.++++|+++++.+..+.++++.|+++++++|+.+|.+++|+++++++|+++|+++..+++.+++++|
T Consensus       360 ~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE  439 (571)
T KOG1237|consen  360 FVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVE  439 (571)
T ss_pred             eehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHH
Confidence            99999999999983499999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             HHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514          314 KKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD  393 (462)
Q Consensus       314 ~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~  393 (462)
                      .+|++.+.++. ...+++|++||+|||+++|+||+|.+++++||.|+|+|++||++.+++|+++.++|++++.++++++.
T Consensus       440 ~krl~~~~~~~-~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~  518 (571)
T KOG1237|consen  440 AKRLKTAVSLL-VETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQ  518 (571)
T ss_pred             HHHhhhhhhcc-CCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998775411 23468999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCcccc-CCCccchhHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 012514          394 HVTDKSGRSWFG-KDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQR  445 (462)
Q Consensus       394 ~~~~~~~~~w~~-~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~  445 (462)
                      ..+.. ..+|++ +|+|.+|+++|||+++++..++.+.|+.++++|++++.++
T Consensus       519 ~~t~~-~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~  570 (571)
T KOG1237|consen  519 FSTGK-AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD  570 (571)
T ss_pred             HhcCC-CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence            87743 126999 9999999999999999999999999999999999886543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-53  Score=426.31  Aligned_cols=365  Identities=18%  Similarity=0.240  Sum_probs=285.7

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i  101 (462)
                      .....++++|++|++|+|++|||++++++|||+++|||    +|.+|++||+++|+|++++|++++++++++||+.+|++
T Consensus       115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~  190 (498)
T COG3104         115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL  190 (498)
T ss_pred             ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            34788999999999999999999999999999999985    47899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcccceeecC--CCCCCchh------H---HHHHHHHH-HhCCCCCCCCCCcccccccccccccccc
Q 012514          102 ITIVMAVSLLIFIIGRPFYRYRV--PKGSPLTP------M---LQVLVAAI-AKRNLPHPSDPDQLFEYPKVVAKGRLLC  169 (462)
Q Consensus       102 ~~i~~~~~~iifl~~~~~~~~~~--p~~~~~~~------~---~~vl~~a~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~  169 (462)
                      ++++|.+++++|+++++++.+..  |+.+|.+.      .   ..++..+. ...          +              
T Consensus       191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l--------------  246 (498)
T COG3104         191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL----------L--------------  246 (498)
T ss_pred             HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH----------H--------------
Confidence            99999999999999999877653  33333321      0   11111110 000          0              


Q ss_pred             ccccchh-hhHhhh-hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHH-HHhccCCC
Q 012514          170 HTKNLEF-LDKAAI-LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA-ATMNREIG  246 (462)
Q Consensus       170 ~~~~~~~-ld~a~i-~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~~~~~g  246 (462)
                      ..+..+. +....+ +.-.+.......+     +.+ ||||++++++++++..++||++|+|+.|+++.|+ ++.|++..
T Consensus       247 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~  320 (498)
T COG3104         247 NQNTFSGVLLVISILIAIIYFAEAFRSP-----KVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF  320 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccC-----ccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence            0000000 000000 0000000001111     334 8999999999999999999999999999999999 56788766


Q ss_pred             CCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 012514          247 NGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTK  326 (462)
Q Consensus       247 ~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~  326 (462)
                       |+++|++|+|++||++|++++|+++++|+|+.++. ++   ++++.|+++|+++++++|+++.........        
T Consensus       321 -g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~~--------  387 (498)
T COG3104         321 -GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFGG--------  387 (498)
T ss_pred             -ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhcC--------
Confidence             89999999999999999999999999999988775 33   489999999999999999999887543211        


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccC
Q 012514          327 GSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGK  406 (462)
Q Consensus       327 ~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~  406 (462)
                      +.+.+|++|++++|+++++||+|++|+|+|++++++|++++|++||+|+++.++|+.+++.+.+.... + .       +
T Consensus       388 ~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~-~-------~  458 (498)
T COG3104         388 PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T-D-------P  458 (498)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c-c-------h
Confidence            13579999999999999999999999999999999999999999999999999999999887662110 0 0       0


Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 012514          407 DMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKN  442 (462)
Q Consensus       407 ~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~  442 (462)
                      ..+....-.+|+.++..+++..++...++++.+|..
T Consensus       459 ~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~  494 (498)
T COG3104         459 AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMM  494 (498)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence            111223457899999999999999999999887753

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=1.2e-42  Score=371.04  Aligned_cols=358  Identities=23%  Similarity=0.439  Sum_probs=297.2

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-------ch
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV-------SW   95 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~-------g~   95 (462)
                      +...++++|+++++|+|++|||++++++|||++++++   +++++|+||||++|+|+++++.+++++++++       ||
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~---~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~  160 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS---LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY  160 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence            3456889999999999999999999999999875542   3579999999999999999999999998554       69


Q ss_pred             hhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccch
Q 012514           96 GAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLE  175 (462)
Q Consensus        96 ~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  175 (462)
                      +++|++++++|++++++|+.++++|++.+|.++++..+.+++..+++++..... .                  + ...+
T Consensus       161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~-~------------------~-~~~~  220 (654)
T TIGR00926       161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS-E------------------H-WPLH  220 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC-c------------------c-cchh
Confidence            999999999999999999999999988888888888888888888766422110 0                  0 1135


Q ss_pred             hhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccc
Q 012514          176 FLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPAS  255 (462)
Q Consensus       176 ~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~  255 (462)
                      |+|++...               ...+++||+|++++++++++..++||..|+|+.+++++|+.+||++++ |+.+|+++
T Consensus       221 ~ld~a~~~---------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~  284 (654)
T TIGR00926       221 WLDYAKDK---------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQ  284 (654)
T ss_pred             HHHHhccc---------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHH
Confidence            67766321               124579999999999999999999999999999999999999998888 99999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhc---------------
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVV---------------  320 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~---------------  320 (462)
                      ++++|+++++++.|++++.++|.++|++.   ++++++|+++|++++++++++++++|..+++..               
T Consensus       285 lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~  361 (654)
T TIGR00926       285 MQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLN  361 (654)
T ss_pred             HHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEec
Confidence            99999999999999999999999888654   358999999999999999999998885432100               


Q ss_pred             ----------------------------------------c--------------------------c------------
Q 012514          321 ----------------------------------------E--------------------------E------------  322 (462)
Q Consensus       321 ----------------------------------------~--------------------------~------------  322 (462)
                                                              .                          +            
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (654)
T TIGR00926       362 TDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYVL  441 (654)
T ss_pred             CCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEEE
Confidence                                                    0                          0            


Q ss_pred             ------------------------------------C-------------------------------------------
Q 012514          323 ------------------------------------N-------------------------------------------  323 (462)
Q Consensus       323 ------------------------------------~-------------------------------------------  323 (462)
                                                          +                                           
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (654)
T TIGR00926       442 LLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDNA  521 (654)
T ss_pred             EEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeeccccccc
Confidence                                                0                                           


Q ss_pred             ------------C-C---------------------CCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhH
Q 012514          324 ------------P-T---------------------KGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSL  369 (462)
Q Consensus       324 ------------g-~---------------------~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~  369 (462)
                                  | .                     ++.+++|++||+|||++.++||++.+++++|+.+++||++||+.
T Consensus       522 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~  601 (654)
T TIGR00926       522 KSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSV  601 (654)
T ss_pred             ccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHH
Confidence                        0 0                     01335889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012514          370 GIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRY  438 (462)
Q Consensus       370 ~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~  438 (462)
                      .+++|.++.++|+.+...+.. ++...               +....|.+++.++++..++|..+++.|
T Consensus       602 ~~a~~~~~~~~g~~~~~~~~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       602 LQALWLLTVAIGNLIVVVIAE-FENFS---------------VQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhcCh---------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999865543 22111               224458889999999999999999776

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=1.1e-41  Score=352.74  Aligned_cols=379  Identities=13%  Similarity=0.130  Sum_probs=266.1

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Q 012514           25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITI  104 (462)
Q Consensus        25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i  104 (462)
                      ..+++++.++++|+|+++||.+++++|+|+++|++    ++++|+++|+++|+|++++|.+++++.+++||+++|+++++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            44677888899999999999999999999887653    36899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcccceeecCC-CCCCch--hHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchh-hhHh
Q 012514          105 VMAVSLLIFIIGRPFYRYRVP-KGSPLT--PMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEF-LDKA  180 (462)
Q Consensus       105 ~~~~~~iifl~~~~~~~~~~p-~~~~~~--~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-ld~a  180 (462)
                      +|++++++++.+++.+.+..+ +.+|.+  +....+...+.-.....+    .+...        .+ ....... +-.+
T Consensus       177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~-~~~~~~~~~~~~  243 (493)
T PRK15462        177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATP----ALITV--------LF-WKEWSVYALIVA  243 (493)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHH----HHHHH--------HH-HHHHHHHHHHHH
Confidence            999999999988887654311 112221  100000000000000000    00000        00 0000000 0000


Q ss_pred             hhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHH-HHhccCCCCCeeeCccccchh
Q 012514          181 AILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA-ATMNREIGNGFLIPPASVFGL  259 (462)
Q Consensus       181 ~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~~~~~g~g~~ip~~~~~~~  259 (462)
                      .+....++.....      +..+.||||++..++++++..++||+.|+|+.+++++++ +++|++++ |+++|++|+|++
T Consensus       244 ~~~~~~~~~~~~~------~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qsl  316 (493)
T PRK15462        244 TIIGLGVLAKIYR------KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSI  316 (493)
T ss_pred             HHHHHHHHHHHHH------hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhH
Confidence            0000000000000      112467899999999999999999999999999999999 68999999 999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHH
Q 012514          260 TAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQ  339 (462)
Q Consensus       260 n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~  339 (462)
                      ||++|+++.|++.++|.++.+|. ++   ++.+.|+++|+++.++||+++.+....    ..++     ..+|++|++..
T Consensus       317 Np~~ii~l~P~~a~lw~~l~~~~-~~---~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~-----~~~s~~wl~~~  383 (493)
T PRK15462        317 NAFAVMLCGVFLAWVVKESVAGN-RT---VRIWGKFALGLGLMSAGFCILTLSARW----SAMY-----GHSSLPLMVLG  383 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCC-----CCcCHHHHHHH
Confidence            99999999999999998775432 23   489999999999999999999876542    1212     25899999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHH-hHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHH
Q 012514          340 SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVI-GAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW  418 (462)
Q Consensus       340 ~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~-~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~  418 (462)
                      |+++|+||++.+|.++++++++||++++|++||+|++.. ++|+.+++.+.+.+...+ .++  -...+-+..++..+|.
T Consensus       384 ~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~-~~~--~~~~~~~~~~~~~~f~  460 (493)
T PRK15462        384 LAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQAS-FDA--SGAINYSINAYIEVFD  460 (493)
T ss_pred             HHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCc--cccccchhhhHHHHHH
Confidence            999999999999999999999999999999999999965 899999999988664211 000  0000001113456777


Q ss_pred             HHHHHHHHH-H-HHHHhhhhccccccc
Q 012514          419 LLAALVAAN-L-FVYVVVARRYSYKNV  443 (462)
Q Consensus       419 ~la~l~~~~-~-v~~~~~~~~~~~~~~  443 (462)
                      .++..+++. + +.+..+-+.+|.|+|
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
T PRK15462        461 QITWGALACVGVVLMIWLYQALKFRNR  487 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            777766655 3 333333344444433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=2.4e-43  Score=357.57  Aligned_cols=340  Identities=33%  Similarity=0.512  Sum_probs=236.1

Q ss_pred             CCcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhH
Q 012514           19 PRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAA   98 (462)
Q Consensus        19 ~~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~   98 (462)
                      +++.+.+.+++||.++++|+|++|||++++++|||++++++   +++++|+||||++|+|++++..+++++++++||+++
T Consensus        28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~  104 (372)
T PF00854_consen   28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG  104 (372)
T ss_dssp             ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence            44566899999999999999999999999999999987532   347999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcccceeec-CCCCCCchh-HHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchh
Q 012514           99 DVIITIVMAVSLLIFIIGRPFYRYR-VPKGSPLTP-MLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEF  176 (462)
Q Consensus        99 F~i~~i~~~~~~iifl~~~~~~~~~-~p~~~~~~~-~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  176 (462)
                      |++++++|++++++|+.++++|++. +|.++++.. ...++..+.+++....|.....+....+. ......  ......
T Consensus       105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~  181 (372)
T PF00854_consen  105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSWLDWALFQ-YSERSI--FGIIVF  181 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHHHHHHHHH-HCCCCC--CCCCCH
T ss_pred             hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHHHHHhhhh-hhhhhh--hhhhhh
Confidence            9999999999999999999999887 677888877 44555555555443322110001110000 000000  000001


Q ss_pred             hhHhhhhcCCCCCCCCCCCcc-cccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCC-eeeCcc
Q 012514          177 LDKAAILEDYETPVDQQSPWR-IANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNG-FLIPPA  254 (462)
Q Consensus       177 ld~a~i~~~~~~~~~~~~~~~-~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g-~~ip~~  254 (462)
                      .+.+.+ ...+     ...|+ .++++++|+.|.+.+.++.+...++|+..+.|..+....|..++|+.++ + +++|++
T Consensus       182 ~~~~~~-~~~~-----~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~  254 (372)
T PF00854_consen  182 IRAAVI-FFPE-----IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPA  254 (372)
T ss_dssp             HHHHHH-HCCC-----HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SG
T ss_pred             ccchhh-hhhh-----hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccc
Confidence            111111 1110     00111 1456788999999999999999999999999988888888888988888 7 999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +++++|+++++++.|+++++++|++++ ++   +.+++.|+++|++++.+++++.+.+|..|.....+++     ..+.+
T Consensus       255 ~l~~~n~i~iii~~pi~~~~~~p~~~~-~~---~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-----~~~~~  325 (372)
T PF00854_consen  255 WLQSFNPIFIIIFIPILDRVVYPLLRR-GI---QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG-----KVSPW  325 (372)
T ss_dssp             GGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-----T--TH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHhhh-cc---cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-----CCChh
Confidence            999999999999999999999999883 33   3589999999999999999999999987766555433     56779


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhH
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGA  380 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~  380 (462)
                      |++|.|++++++|+++++++++.+++.+|+++++.|+|+|+...++
T Consensus       326 ~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  326 WQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF  371 (372)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999887654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.2e-38  Score=330.28  Aligned_cols=373  Identities=13%  Similarity=0.133  Sum_probs=275.0

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Q 012514           25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITI  104 (462)
Q Consensus        25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i  104 (462)
                      ..++++++++++|+|++|||..++++|+|+++++|    ++++|+++|+++|+|+++||.++|++.+++||+++|+++++
T Consensus       106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            34668999999999999999999999999877642    35789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcccceeec--CCCCCCch--hHHH------HHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514          105 VMAVSLLIFIIGRPFYRYR--VPKGSPLT--PMLQ------VLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL  174 (462)
Q Consensus       105 ~~~~~~iifl~~~~~~~~~--~p~~~~~~--~~~~------vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  174 (462)
                      +++++++.+..+++.+++.  +|++++..  ....      .+...+.....    ... .              ..   
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~----~~~-~--------------~~---  239 (489)
T PRK10207        182 GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMH----NVE-V--------------AN---  239 (489)
T ss_pred             HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHh----hhh-H--------------HH---
Confidence            9999998888888777553  23333321  1110      00111100000    000 0              00   


Q ss_pred             hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHH-HhccCCCCCeeeCc
Q 012514          175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAA-TMNREIGNGFLIPP  253 (462)
Q Consensus       175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~~~~~g~g~~ip~  253 (462)
                      ..+..+.++....+      -++.. ..+.+++++.+..+++++..++||..|+|+.+++++|+. ++|+++. |+++|+
T Consensus       240 ~~~~~~~~i~~~~f------~~~~~-~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~  311 (489)
T PRK10207        240 LVLIVLSIVVTIIF------FREAF-KLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINP  311 (489)
T ss_pred             HHHHHHHHHHHHHH------HHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECH
Confidence            00000000000000      00000 112346777788888899999999999999999999885 6887777 999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++|++|+++++++.|+.++++.++.+| +.   ++++++|+++|+++.++|++++++.+...   ...+     ..+|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r-~~---~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~-----~~~s~  379 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSK-GK---DLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ-----GLTSP  379 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhC-CC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCC-----CccCH
Confidence            9999999999999999999877665443 33   35899999999999999998876554311   1111     24789


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL  413 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l  413 (462)
                      ||+++.|++.|+||++.+|++++++++.+|++++|.+||+|+++.++|+.+|+.+.+.+.... .   ..-+.. ..+.+
T Consensus       380 ~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~-~---~~~~~~-~~~~~  454 (489)
T PRK10207        380 WFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPD-N---ITDPLE-TLPVY  454 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c---cccchh-hhhhH
Confidence            999999999999999999999999999999999999999999999999999999887654211 0   000100 01235


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 012514          414 DKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVA  448 (462)
Q Consensus       414 ~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~~~  448 (462)
                      ..+|..+++.+++.+++++++.|+++|..+++|.|
T Consensus       455 ~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  489 (489)
T PRK10207        455 TNVFGKIGLVTLGVAVVMALMVPWLNRMINTPESH  489 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            78899999999999999999999999987777654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=6.5e-37  Score=319.87  Aligned_cols=361  Identities=14%  Similarity=0.127  Sum_probs=268.8

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT  103 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~  103 (462)
                      .+.+++++.++++|.|+++|+..++++|++++++++ +  ++++|+++|+++|+|+++|+.+++++.+++||+++|.+++
T Consensus       102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~-~--r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~  178 (475)
T TIGR00924       102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP-R--RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA  178 (475)
T ss_pred             HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc-c--ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            567888999999999999999999999999876532 1  3679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcccceeecCCCCCCchhH-----H--HH----HHHHHHhCCCCCCCCCCccccccccccccccccccc
Q 012514          104 IVMAVSLLIFIIGRPFYRYRVPKGSPLTPM-----L--QV----LVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTK  172 (462)
Q Consensus       104 i~~~~~~iifl~~~~~~~~~~p~~~~~~~~-----~--~v----l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  172 (462)
                      +.+++++++++..++.+++.++++++.+..     .  ..    +....+... ...+.    +.       .    + .
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~-------~----~-~  241 (475)
T TIGR00924       179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAW-LMHHV----VI-------A----N-I  241 (475)
T ss_pred             HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHH-HHhcc----HH-------H----H-H
Confidence            999999888888888776544333322110     0  00    000111000 00000    00       0    0 0


Q ss_pred             cchhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHH-HHhccCCCCCeee
Q 012514          173 NLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA-ATMNREIGNGFLI  251 (462)
Q Consensus       173 ~~~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~~~~~g~g~~i  251 (462)
                      .......+..+....   ....|     ..+.+|+++..+++++++..++||++|+|+.++++++. +++|++++ ++++
T Consensus       242 ~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~i  312 (475)
T TIGR00924       242 LLMTVTLAVIIFFFR---LAFKP-----RLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSV  312 (475)
T ss_pred             HHHHHHHHHHHHHHH---HHHhc-----cCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEE
Confidence            000000011100000   00011     11234555667789999999999999999999998876 67998888 9999


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 012514          252 PPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSM  331 (462)
Q Consensus       252 p~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~  331 (462)
                      |+++++++|++++++++|+++++|.++.+| +++   .++..|+++|+++.++|++.+++...    ..++     ..++
T Consensus       313 p~~~~~~~n~~~iil~~p~~~~~~~~l~~~-~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~-----~~~~  379 (475)
T TIGR00924       313 PVIWFQSLNPFWVVVGSPVLAMIWTRLGRK-GKD---PTTPLKFTLGMLFCGASFLTFAASIW----FADA-----GGLT  379 (475)
T ss_pred             CHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCC---CCcHHHHHHHHHHHHHHHHHHHHHHh----hcCC-----CCcc
Confidence            999999999999999999999877666544 332   37888999999999999999987632    1222     2368


Q ss_pred             chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514          332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS  411 (462)
Q Consensus       332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~  411 (462)
                      |+||++++|+++|+||++++|++++++++++|+++||.++|+|.++.++|+.+++.+.+.....            .   
T Consensus       380 s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~------------~---  444 (475)
T TIGR00924       380 SPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP------------Q---  444 (475)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------c---
Confidence            9999999999999999999999999999999999999999999999999999999887743210            0   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514          412 RLDKFYWLLAALVAANLFVYVVVARRYSYK  441 (462)
Q Consensus       412 ~l~~~f~~la~l~~~~~v~~~~~~~~~~~~  441 (462)
                      ....+|..+++++++.+++++++.|+++|.
T Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  474 (475)
T TIGR00924       445 GVTGVFGKIGLVTLLVGVVMALMVPWLNRM  474 (475)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            134578889999999999999999988874

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=3e-36  Score=316.70  Aligned_cols=368  Identities=13%  Similarity=0.181  Sum_probs=271.1

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT  103 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~  103 (462)
                      .+.+++++.++++|.|+++|+..++++|+|++++++    ++++++++|+++|+|+++||.+++++.+++||+++|.+++
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            456778889999999999999999999999876532    2568999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcccceeec--CCCCCCchh--H----HHHHHHH-HHhCCCCCCCCCCccccccccccccccccccccc
Q 012514          104 IVMAVSLLIFIIGRPFYRYR--VPKGSPLTP--M----LQVLVAA-IAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL  174 (462)
Q Consensus       104 i~~~~~~iifl~~~~~~~~~--~p~~~~~~~--~----~~vl~~a-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  174 (462)
                      +.++++++.++..++.+++.  +|++++...  .    ..+.... ........+   + ..             +  ..
T Consensus       188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~-------------~--~~  248 (500)
T PRK09584        188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ---E-IA-------------R--MA  248 (500)
T ss_pred             HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc---h-HH-------------H--HH
Confidence            99999998887777666543  233333221  1    1111111 000000000   0 00             0  00


Q ss_pred             hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHH-HHhccCCCCCeeeCc
Q 012514          175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA-ATMNREIGNGFLIPP  253 (462)
Q Consensus       175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~~~~~g~g~~ip~  253 (462)
                      ............        ....+ +.+.+|+++.+..+++++..++||++|.|+.+.+..|+ .++|+++. |+.+|+
T Consensus       249 ~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~  318 (500)
T PRK09584        249 LGVVALGIVVIF--------GKEAF-AMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEP  318 (500)
T ss_pred             HHHHHHHHHHHH--------HHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECH
Confidence            000000000000        00000 12345677777888899999999999999999999998 45787777 999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++++++|++.+++++|+.++++.++.+|       +++.+|+++|+++.++|++++++....    ..++     ..+|.
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~~-----~~vs~  382 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----ANDA-----GIVSV  382 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCC-----CccCH
Confidence            9999999999999999999987655333       368899999999999999998876532    2222     36899


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCc-cch
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMN-SSR  412 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n-~~~  412 (462)
                      +|++++|+++|+||++++|.+++++++++|+++||++||+|+++.++|+.+++.+.+.+.. +.     -..+... .+.
T Consensus       383 ~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~-~~-----~~~~~~~~~~~  456 (500)
T PRK09584        383 NWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV-PD-----NVTDPLMSLEV  456 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-----ccccchhhhhh
Confidence            9999999999999999999999999999999999999999999999999999998875431 00     0001111 112


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012514          413 LDKFYWLLAALVAANLFVYVVVARRYSYKNVQRS  446 (462)
Q Consensus       413 l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~  446 (462)
                      +..+|..+++++++.++++++++++++|..+.+.
T Consensus       457 ~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~  490 (500)
T PRK09584        457 YGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDS  490 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            5678888999999899999999999998755544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.44  E-value=4.3e-11  Score=123.08  Aligned_cols=298  Identities=9%  Similarity=-0.058  Sum_probs=166.6

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.+++..++.+++.|...+...+.+.|.+++++      +.++.+++++..++|..+|+.+++++.+..+|++.|.+.
T Consensus       109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~  182 (417)
T PRK10489        109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA  182 (417)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence            35666777778888888888888888888876432      256788999999999999999999998888999999988


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      ++..+++.+.....++    .+|+...              +.     +                   . .....+..  
T Consensus       183 ~~~~~~~~~~~~~l~~----~~~~~~~--------------~~-----~-------------------~-~~~~~~~~--  217 (417)
T PRK10489        183 AAGTFITLLPLLRLPA----LPPPPQP--------------RE-----H-------------------P-LRSLLAGF--  217 (417)
T ss_pred             HHHHHHHHHHHHhCCC----CCCCCcc--------------cc-----c-------------------c-hHHHHHHH--
Confidence            7777666554332211    1111000              00     0                   0 00000000  


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCc---cccchh
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPP---ASVFGL  259 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~---~~~~~~  259 (462)
                                    +     .+-..+.+ +.+  ++.... +.......+.+....   ....+    .++   +++...
T Consensus       218 --------------~-----~~~~~~~~-~~~--~~~~~~-~~~~~~~~~~~p~~~---~~~~g----~~~~~~g~~~~~  267 (417)
T PRK10489        218 --------------R-----FLLASPVV-GGI--ALLGGL-LTMASAVRVLYPALA---DEVWQ----MGAAQIGLLYAA  267 (417)
T ss_pred             --------------H-----HHHcChHH-HHH--HHHHHH-HHHHHhHHHhhHHHH---HhccC----CChhHhHHHHHH
Confidence                          0     00000111 111  111111 111111111111111   11112    222   234444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHH
Q 012514          260 TAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQ  339 (462)
Q Consensus       260 n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~  339 (462)
                      ..+..++...+..++-    +| .      ++.+.+.++.++.+++++..+..                  .+.+..+..
T Consensus       268 ~~~g~~ig~~~~~~l~----~~-~------~~~~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~  318 (417)
T PRK10489        268 VPLGAALGALTSGWLA----HS-A------RPGLLMLLSTLGSFLAVGLFGLM------------------PMWILAVLC  318 (417)
T ss_pred             HHHHHHHHHHHHHHhh----hc-c------CcchHHHHHHHHHHHHHHHHHcc------------------chHHHHHHH
Confidence            4455555544444321    22 1      22334556666666666544321                  123334446


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHH
Q 012514          340 SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWL  419 (462)
Q Consensus       340 ~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~  419 (462)
                      .++.+++.....+....++.+..|++.||..+|++.....+|..+|+.+.+.+..            ..+.   ...++.
T Consensus       319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~------------~~g~---~~~~~~  383 (417)
T PRK10489        319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA------------MMTP---VASASA  383 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH------------Hhch---hhHHHH
Confidence            6778899888888888999999999999999999998888888888888764431            1221   223455


Q ss_pred             HHHHHHHHHHHHHhhhhccccccccc
Q 012514          420 LAALVAANLFVYVVVARRYSYKNVQR  445 (462)
Q Consensus       420 la~l~~~~~v~~~~~~~~~~~~~~~~  445 (462)
                      .+++.++..++.....+++++++.|+
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (417)
T PRK10489        384 SGFGLLIIGVLLLLVLGELRRFRQTP  409 (417)
T ss_pred             HHHHHHHHHHHHHHhccccccccccc
Confidence            55555555555555556666554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.36  E-value=1e-10  Score=119.84  Aligned_cols=260  Identities=10%  Similarity=0.053  Sum_probs=155.1

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+++.|.+.|...+.+.|.+++++      +.+++++.+...++|..+|+.+++++. +++|++.|++.
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~  170 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG  170 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            46778888889999999999999999998876432      367899999999999999999999998 68999999988


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      ++..++..++.....+..   ++  ++.                +   + + .              .   ..+..   +
T Consensus       171 ~~~~~~~~i~~~~~~~~~---~~--~~~----------------~---~-~-~--------------~---~~~~~---~  204 (400)
T PRK11646        171 AVLFVLAAAFNAWLLPAY---KL--STV----------------R---T-P-V--------------R---EGMTR---V  204 (400)
T ss_pred             HHHHHHHHHHHHHhCCcc---cc--ccc----------------c---h-h-h--------------H---HHHHH---H
Confidence            777666554433221110   00  000                0   0 0 0              0   00000   0


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV  262 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l  262 (462)
                                           ..++ ++.   .+.+....++..+.|....+....   .. .+ +.....+++.+++.+
T Consensus       205 ---------------------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~p~~~---~~-~~-~~~~~~g~l~~~~~~  254 (400)
T PRK11646        205 ---------------------LRDK-RFV---TYVLTLTGYYMLAVQVMLMLPIMV---ND-IA-GSPSAVKWMYAIEAC  254 (400)
T ss_pred             ---------------------HcCc-hHH---HHHHHHHHHHHHHHHHHHhhhhhH---Hh-hc-CCchHHHHHHHHHHH
Confidence                                 0011 111   111112223333333221121111   11 11 110111234444444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHH
Q 012514          263 GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSII  342 (462)
Q Consensus       263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l  342 (462)
                      ..+.+.....++.    .|+.      +..+++..|.++.+++++..+..+                  +.++.+...++
T Consensus       255 ~~~~~~~~~~~~~----~~r~------~~~~~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~l  306 (400)
T PRK11646        255 LSLTLLYPIARWS----EKRF------RLEHRLMAGLLIMSLSMFPIGMVS------------------NLQQLFTLICL  306 (400)
T ss_pred             HHHHHHHHHHHHH----HHhc------chhHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHH
Confidence            4443333333322    2211      233456777777777766554321                  22334445577


Q ss_pred             HHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514          343 SGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD  393 (462)
Q Consensus       343 ~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~  393 (462)
                      .++|+.+..|.....+.+.+|++.||..+|++.+..++|..+|+.+.+.+.
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~  357 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLF  357 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHH
Confidence            899999999999999999999999999999999999999999888777543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.30  E-value=1.5e-09  Score=110.59  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++.++++++.|.+-|...+++.|.+++++      +.++++++..+.++|..+++.+++.+.+++||++.|.+.
T Consensus        96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~  169 (390)
T PRK03545         96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI  169 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence            47778888889999999999999999999987532      257899999999999999999999998889999999998


Q ss_pred             HHHHHHHHHH
Q 012514          103 TIVMAVSLLI  112 (462)
Q Consensus       103 ~i~~~~~~ii  112 (462)
                      ++..++..+.
T Consensus       170 ~~~~~l~~~~  179 (390)
T PRK03545        170 GGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHH
Confidence            7766655543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.30  E-value=3.4e-09  Score=108.53  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+++.+...+...+...|.+++++      +.+..++.+...++|..++|.+++++.++.+|++.|.+.
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~  173 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF  173 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            46677888888999999988989999999886532      245677888888899999999999998889999999987


Q ss_pred             HHHHHHHHHHH
Q 012514          103 TIVMAVSLLIF  113 (462)
Q Consensus       103 ~i~~~~~~iif  113 (462)
                      ++..+++.+..
T Consensus       174 ~~~~~~~~~~~  184 (406)
T PRK15402        174 AALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHH
Confidence            77777665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.23  E-value=4.1e-09  Score=107.21  Aligned_cols=277  Identities=14%  Similarity=0.144  Sum_probs=165.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+.+.+..-|...++..+ +    .+   ++.+.++......++|..+++.+++++.+++||+..|.+.
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~----~~---~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT-W----QK---QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH-H----HH---HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            46777788888888888888888887643 2    11   1256799999999999999999999999999999999886


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      ++...+.++.+ ..++..   +|+++.               .     +      .+          ......+.+   +
T Consensus       165 ~~~~~~~~~~~-~~~~~~---~~~~~~---------------~-----~------~~----------~~~~~~~~~---~  201 (382)
T TIGR00902       165 TAGLAFMLIGF-LIKPTI---PPKDAI---------------P-----E------DE----------SQGDSAFIA---L  201 (382)
T ss_pred             HHHHHHHHHHH-HcCCCC---CCCccc---------------c-----c------cc----------cccchhHHH---H
Confidence            55433332222 211110   111000               0     0      00          000000000   0


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCc---cccchh
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPP---ASVFGL  259 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~---~~~~~~  259 (462)
                                           ..+ |+   +..+.+...+++..+.+..+....+...    .|    .++   +.+..+
T Consensus       202 ---------------------l~~-~~---~~~~l~~~~l~~~~~~~~~~~~~~~l~~----~g----~s~~~~g~l~~~  248 (382)
T TIGR00902       202 ---------------------LKN-PM---NLRFLAAVCLIQGAHAAYYGFSAIYWQA----AG----ISASATGLLWGI  248 (382)
T ss_pred             ---------------------HcC-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----CC----CCHhHHHHHHHH
Confidence                                 001 12   2233333444455555555544333222    23    233   234445


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHH
Q 012514          260 TAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQ  339 (462)
Q Consensus       260 n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~  339 (462)
                      +.+..++..++.+++    .+|+       ++.+-+.+|.++.++.++..++.+                  +.++++..
T Consensus       249 ~~~~~i~~~~~~~~l----~~r~-------g~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~~  299 (382)
T TIGR00902       249 GVLAEIIIFAFSNKL----FQNC-------SARDLLLISAIACVGRWAIIGAIE------------------AFPLIFLL  299 (382)
T ss_pred             HHHHHHHHHHHhHHH----HhhC-------CHHHHHHHHHHHHHHHHHHHHhHh------------------hHHHHHHH
Confidence            555555555554443    3442       344556788888888877665432                  34445555


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHH-HHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHH
Q 012514          340 SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYL-SVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW  418 (462)
Q Consensus       340 ~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~-l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~  418 (462)
                      -+++++.+.+..+....++.+. |++.++.++|++. +..++|..+|+.+.+.+.            |..+    ...|+
T Consensus       300 q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~------------~~~g----~~~~~  362 (382)
T TIGR00902       300 QILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY------------PTLG----AGTFV  362 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------Hhcc----HHHHH
Confidence            5999999999999999999998 9999999999986 567888888877766432            2232    23467


Q ss_pred             HHHHHHHHHHH
Q 012514          419 LLAALVAANLF  429 (462)
Q Consensus       419 ~la~l~~~~~v  429 (462)
                      ..++++++.++
T Consensus       363 ~~~~~~~~~~~  373 (382)
T TIGR00902       363 FMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHHHHHH
Confidence            77777765543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.23  E-value=6.6e-09  Score=104.37  Aligned_cols=86  Identities=17%  Similarity=0.250  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.++|.|...|...+++.|.+++++      +.++++++....++|.++++.+++++.++.+|++.|.+.
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            57888899999999999999999999999986422      267899999999999999999999988889999999987


Q ss_pred             HHHHHHHHHHHH
Q 012514          103 TIVMAVSLLIFI  114 (462)
Q Consensus       103 ~i~~~~~~iifl  114 (462)
                      ++..++..+...
T Consensus       155 ~~~~~~~~~~~~  166 (399)
T TIGR00893       155 GVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHHhh
Confidence            776666555433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.23  E-value=3e-09  Score=106.16  Aligned_cols=264  Identities=12%  Similarity=0.048  Sum_probs=156.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+++.|...|...+++.|.+++++      +.++++++..+.++|.++|+.+++++.+..||++.|.+.
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            57888899999999999999999999999986532      257899999999999999999999998889999999988


Q ss_pred             HHHHHHHHHHHHHcccceeecCC-CCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVP-KGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAA  181 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p-~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~  181 (462)
                      ++..+++.+.....+..  ++++ +.++..                                      +.......+.  
T Consensus       165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------------------------------------~~~~~~~~~~--  202 (365)
T TIGR00900       165 AVGFAISALLIVSVRIP--ELAASEIQALS--------------------------------------NAVLRDTREG--  202 (365)
T ss_pred             HHHHHHHHHHHHhcccc--cCCCccccccc--------------------------------------hhHHHHHHhH--
Confidence            77766665543332111  0000 000000                                      0000000000  


Q ss_pred             hhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchh-HHHHHHHHHhccCCCCCeeeCc---cccc
Q 012514          182 ILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQST-TFFIKQAATMNREIGNGFLIPP---ASVF  257 (462)
Q Consensus       182 i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~-s~~~~qa~~~~~~~g~g~~ip~---~~~~  257 (462)
                                            ..+.++-..+..+.+...+++..+.... ..+.......   .+    .++   +.+.
T Consensus       203 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~  253 (365)
T TIGR00900       203 ----------------------IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY---LG----RGSTHYGWVL  253 (365)
T ss_pred             ----------------------HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hC----CchHHHHHHH
Confidence                                  0000000011122222222232222111 1111111110   11    222   2334


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514          258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA  337 (462)
Q Consensus       258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli  337 (462)
                      ....+..++..++..++    .+|.       ...+-+.++.++.+++++......                + +.++.+
T Consensus       254 ~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~~~  305 (365)
T TIGR00900       254 AAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGLTP----------------P-NFPLFL  305 (365)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHhhc----------------h-hHHHHH
Confidence            44444445555554432    2232       122234455556666555544321                1 244555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          338 PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       338 ~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ...++.+++.....+.....+.+..|++.||..+|++.....+|..+++.+.+.
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~  359 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP  359 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677899999999999999999999999999999999999999999998877663

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.22  E-value=1.8e-09  Score=110.27  Aligned_cols=293  Identities=14%  Similarity=0.145  Sum_probs=160.5

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++.++.+++.+. -|...+...|++++++      +.++.+++..+.++|.++++.+.+++.+..+|+..|.+.
T Consensus       106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  178 (408)
T PRK09874        106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT  178 (408)
T ss_pred             hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            467778888888888664 5777788888875322      257788999999999999999999998888999999988


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      ++..+++.+......+.-.  +|..++.                    .                      .+..+....
T Consensus       179 ~~~~~~~~~~~~~~~~~~~--~~~~~~~--------------------~----------------------~~~~~~~~~  214 (408)
T PRK09874        179 ASVLFLCFLVTLFCIRENF--QPVSKKE--------------------M----------------------LHMREVVTS  214 (408)
T ss_pred             HHHHHHHHHHHHHHhccCc--ccccchh--------------------h----------------------hHHHHHHHh
Confidence            7777666554332211100  0100000                    0                      000000000


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV  262 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l  262 (462)
                               ..            +.+..   +.++.....+........+.+..+......+.. ....-...+..+..+
T Consensus       215 ---------~~------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l  269 (408)
T PRK09874        215 ---------LK------------NPKLV---LSLFVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGV  269 (408)
T ss_pred             ---------Cc------------CCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHH
Confidence                     00            00011   111111122222222222222222211111000 000001112223334


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHH
Q 012514          263 GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSII  342 (462)
Q Consensus       263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l  342 (462)
                      ..++..|+..++.    +|.       ...+-+.++.++.+++++.....                  .+.++.....++
T Consensus       270 ~~~~~~~~~g~l~----dr~-------g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  320 (408)
T PRK09874        270 AALLSAPRLGKLG----DRI-------GPEKILITALIFSVLLLIPMSFV------------------QTPLQLGILRFL  320 (408)
T ss_pred             HHHHHHHHHHHHH----hcc-------ccchhHHHHHHHHHHHHHHHHHh------------------ccHHHHHHHHHH
Confidence            4445555554433    332       22233445555555555443321                  123344445678


Q ss_pred             HHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHH
Q 012514          343 SGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAA  422 (462)
Q Consensus       343 ~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~  422 (462)
                      .++++....|.....+.+.+|++.+|..+|++.....+|..+|+.+.+.+.            ++.+   ....|+..++
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~------------~~~g---~~~~f~~~~~  385 (408)
T PRK09874        321 LGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS------------ANYG---FRAVFLVTAG  385 (408)
T ss_pred             HHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH------------hhcc---hhHHHHHHHH
Confidence            899999999999999999999999999999998888888888888776432            1111   2345677777


Q ss_pred             HHHHHHHHHHhhh
Q 012514          423 LVAANLFVYVVVA  435 (462)
Q Consensus       423 l~~~~~v~~~~~~  435 (462)
                      ++++..++.+...
T Consensus       386 ~~l~~~~~~~~~~  398 (408)
T PRK09874        386 VVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666554443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.21  E-value=1.2e-08  Score=104.09  Aligned_cols=278  Identities=15%  Similarity=0.167  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT  103 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~  103 (462)
                      ...++++..+.++|.|...++..+...|.+++++      +.++++++..+.++|..+|+.+++++.+..||+..|.+.+
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~  185 (399)
T PRK05122        112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM  185 (399)
T ss_pred             HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            4567788889999999999999999999886543      2567889999999999999999999988899998887765


Q ss_pred             HHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhhh
Q 012514          104 IVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAIL  183 (462)
Q Consensus       104 i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i~  183 (462)
                      +..++..+   ..++ .++.+++++                      +                  ..   .+       
T Consensus       186 ~~~~~~~~---~~~~-~~~~~~~~~----------------------~------------------~~---~~-------  211 (399)
T PRK05122        186 LLALLGLL---LARP-RPAVPPVKG----------------------E------------------RL---PF-------  211 (399)
T ss_pred             HHHHHHHH---HHhc-CCCCCCCCc----------------------c------------------ch---hH-------
Confidence            54333222   2111 111000000                      0                  00   00       


Q ss_pred             cCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHHH
Q 012514          184 EDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVG  263 (462)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l~  263 (462)
                                          .+..|+.......+   .++...+....+....+..  +.  +  +. ..........+.
T Consensus       212 --------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~--~--~~-~~~~~~~~~~~~  261 (399)
T PRK05122        212 --------------------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYA--AR--G--WD-GAALALTLFGVA  261 (399)
T ss_pred             --------------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--Hc--c--cc-cchHHHHHHHHH
Confidence                                00111111111111   1111111111111111111  11  1  10 112223333444


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHH
Q 012514          264 MIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIIS  343 (462)
Q Consensus       264 iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~  343 (462)
                      .++..++..++.    +|.       ++.+.+.++.++.+++++.....                  .+.++++...++.
T Consensus       262 ~~~~~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~  312 (399)
T PRK05122        262 FVGARLLFGNLI----NRL-------GGLRVAIVSLLVEILGLLLLWLA------------------PSPWMALIGAALT  312 (399)
T ss_pred             HHHHHHHHHHHH----HHh-------ccHHHHHHHHHHHHHHHHHHHHh------------------ccHHHHHHHHHHH
Confidence            444444444432    332       22334556667777766555432                  1234455567889


Q ss_pred             HHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHH
Q 012514          344 GVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAAL  423 (462)
Q Consensus       344 ~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l  423 (462)
                      +++.....|.....+.+..|++.||..+|++.....+|..+++.+.+.+.            +..+   ....|+..+++
T Consensus       313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~------------~~~g---~~~~~~~~~~~  377 (399)
T PRK05122        313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA------------SWFG---YPSIFLAAALA  377 (399)
T ss_pred             HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHcC---HHHHHHHHHHH
Confidence            99999989888888889999999999999999998888888777665332            1111   23445666666


Q ss_pred             HHHHHHHHHhhh
Q 012514          424 VAANLFVYVVVA  435 (462)
Q Consensus       424 ~~~~~v~~~~~~  435 (462)
                      .++..++.+...
T Consensus       378 ~~~~~~~~~~~~  389 (399)
T PRK05122        378 ALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHHHHhc
Confidence            666555544443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.20  E-value=7.6e-09  Score=105.18  Aligned_cols=258  Identities=14%  Similarity=0.061  Sum_probs=148.0

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.+++...+.+++.+...|...++..|.. ++       +.+.++......++|..+||.+++++.+++||+..|.+.
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~-~~-------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~  164 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ-KQ-------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL  164 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHHH-hh-------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            4677777888889999999998888877652 11       135677788888999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      ++..++..+.. ...+   +.+|++++.            + .     .                  +....++.+    
T Consensus       165 ~~~~~~~~~~~-~~~~---~~~~~~~~~------------~-~-----~------------------~~~~~~~~~----  200 (382)
T PRK11128        165 TAGVASMLLGQ-LLRP---TIMPQGESR------------Q-Q-----E------------------SAGWPAWKA----  200 (382)
T ss_pred             HHHHHHHHHHH-HccC---CCCCccccc------------c-c-----c------------------ccccchHHH----
Confidence            76555443322 2211   111111000            0 0     0                  000000000    


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV  262 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l  262 (462)
                                           .-..|.+   ..+.+...+++..+.+..+.+..+..+    .| .-+-..+.+..++.+
T Consensus       201 ---------------------i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g-~s~~~~g~~~~~~~~  251 (382)
T PRK11128        201 ---------------------LLKEPTV---WRFLLCVSLLQGSHAAYYGFSAIYWQA----AG-YSASTIGYLWSLGVV  251 (382)
T ss_pred             ---------------------HHcChhH---HHHHHHHHHHHHHhHhHHHHHHHHHHH----CC-CCHhHHHHHHHHHHH
Confidence                                 0001112   222222333333333333333332221    12 000112345556666


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHH
Q 012514          263 GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSII  342 (462)
Q Consensus       263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l  342 (462)
                      ..++...+.+++.    +|+       +..+.+.++.++.+++++..+..                  .+.++++...++
T Consensus       252 ~~~~~~~~~g~l~----~r~-------~~~~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l  302 (382)
T PRK11128        252 AEVLIFAFSNRLF----RRW-------SARDLLLLSAICGVVRWGLMGST------------------TALPWLIVIQIL  302 (382)
T ss_pred             HHHHHHHHHHHHH----HHC-------CHHHHHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHH
Confidence            6565555555543    332       23344667777777776655432                  134555667788


Q ss_pred             HHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHH-HHHhHHHHHHHHHHhh
Q 012514          343 SGVADGFALVGLQEYFYDQVPDSMRSLGIAFYL-SVIGAANFLSSFLITV  391 (462)
Q Consensus       343 ~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~-l~~~~g~~lg~~l~~~  391 (462)
                      .++++.+..+.....+.++. ++.++.++++.. +..++|..+|+.+.+.
T Consensus       303 ~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~  351 (382)
T PRK11128        303 HCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGF  351 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988875 455688888876 6566776666666553

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.20  E-value=2.1e-08  Score=102.50  Aligned_cols=84  Identities=14%  Similarity=0.175  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.+.++..+.+++.|...|...+++.|.+++++      +.+++++++.+.++|.++++.+++++.+..+|+..|.+.
T Consensus       102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  175 (406)
T PRK11551        102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG  175 (406)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence            46778888899999999999999999999986432      267899999999999999999999998889999999987


Q ss_pred             HHHHHHHHHH
Q 012514          103 TIVMAVSLLI  112 (462)
Q Consensus       103 ~i~~~~~~ii  112 (462)
                      ++..++..+.
T Consensus       176 ~~~~~~~~~~  185 (406)
T PRK11551        176 GVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHH
Confidence            7665555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.19  E-value=8.7e-09  Score=101.90  Aligned_cols=263  Identities=17%  Similarity=0.227  Sum_probs=174.8

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+++.|...+...++..|.+++++      +...+++.+.+.++|..+++.+.+++.++.+|+..|.+.
T Consensus        86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  159 (352)
T cd06174          86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL  159 (352)
T ss_pred             cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            46788889999999999999999999999987633      257899999999999999999999999988999999998


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      ++..+++.+.....+             +...                                                
T Consensus       160 ~~~~~~~~~~~~~~~-------------~~~~------------------------------------------------  178 (352)
T cd06174         160 AILGLLLALLLLFLL-------------RLLL------------------------------------------------  178 (352)
T ss_pred             HHHHHHHHHHHHHHH-------------HHHH------------------------------------------------
Confidence            887777766544321             0000                                                


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV  262 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l  262 (462)
                                                      .+.+....++..+......+.....+. .+..   ....+.+...+.+
T Consensus       179 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~  222 (352)
T cd06174         179 --------------------------------LLALAFFLLSFGYYGLLTYLPLYLQEV-LGLS---AAEAGLLLSLFGL  222 (352)
T ss_pred             --------------------------------HHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHH
Confidence                                            000000001111100011111111110 0100   0112345566666


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCccc-hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHH
Q 012514          263 GMIISVTFYEKILVPVLRRATGNERGIQILQ-RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSI  341 (462)
Q Consensus       263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~-ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~  341 (462)
                      ..++..++..++.++..+           .+ .+.++.++.+++++.....+                  +.++.....+
T Consensus       223 ~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~------------------~~~~~~~~~~  273 (352)
T cd06174         223 GGILGALLGGLLSDRLGR-----------RRLLLLIGLLLAALGLLLLALAP------------------SLALLLVALL  273 (352)
T ss_pred             HHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHhc------------------cHHHHHHHHH
Confidence            667777776664433221           22 46677777777777665421                  2456667889


Q ss_pred             HHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHH
Q 012514          342 ISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLA  421 (462)
Q Consensus       342 l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la  421 (462)
                      +.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+..            +.+   ....|...+
T Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~------------~~~---~~~~~~~~~  338 (352)
T cd06174         274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD------------TGG---YGGVFLILA  338 (352)
T ss_pred             HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------ccC---cchHHHHHH
Confidence            99999999999999999999999999999999999999999999888774431            111   133456666


Q ss_pred             HHHHHHHHHHH
Q 012514          422 ALVAANLFVYV  432 (462)
Q Consensus       422 ~l~~~~~v~~~  432 (462)
                      ++.++..++++
T Consensus       339 ~~~~i~~i~~~  349 (352)
T cd06174         339 ALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHhe
Confidence            66666655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10504 putative transporter; Provisional

Probab=99.19  E-value=1e-08  Score=107.09  Aligned_cols=88  Identities=17%  Similarity=0.065  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++.++.++|.|...|...+.+.|.+++++      +.++++++....++|..+|+.+++++.++.||++.|.+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            46778888999999999999999999999875321      257889999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHc
Q 012514          103 TIVMAVSLLIFIIG  116 (462)
Q Consensus       103 ~i~~~~~~iifl~~  116 (462)
                      .+...++.+.....
T Consensus       171 ~~~~~l~~~~~~~~  184 (471)
T PRK10504        171 IPVGIIGAIATLML  184 (471)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77666666544433

>PRK10054 putative transporter; Provisional

Probab=99.19  E-value=2e-09  Score=110.06  Aligned_cols=82  Identities=18%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT  103 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~  103 (462)
                      .+.++++..+.+.+.+.+.|...+...|.+++++      +.+++++.|...|+|..+||.+++++.+ .+|+..|.+.+
T Consensus        96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~  168 (395)
T PRK10054         96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence            4455555666677777888888999898876432      2578999999999999999999999875 79999999888


Q ss_pred             HHHHHHHHH
Q 012514          104 IVMAVSLLI  112 (462)
Q Consensus       104 i~~~~~~ii  112 (462)
                      +..+++++.
T Consensus       169 ~~~~i~~i~  177 (395)
T PRK10054        169 ICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHH
Confidence            777776543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.17  E-value=1.6e-08  Score=106.76  Aligned_cols=264  Identities=16%  Similarity=0.186  Sum_probs=160.0

Q ss_pred             cchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHH
Q 012514           21 KVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADV  100 (462)
Q Consensus        21 ~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~  100 (462)
                      ..+.+.+++..++++++.+++.|.-++++.++.++++      ..++.++.-...|+.-++||.++|.+-...|-...|.
T Consensus       100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~  173 (524)
T PF05977_consen  100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL  173 (524)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            3457888888899999999999999999999987643      3578899999999999999999999988889999999


Q ss_pred             HHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHh
Q 012514          101 IITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKA  180 (462)
Q Consensus       101 i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a  180 (462)
                      +.+++.+++++.+...++..   +++..+-+.+.+-+...+                                 +++   
T Consensus       174 inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~---------------------------------ryv---  214 (524)
T PF05977_consen  174 INALSFLISILALLRWKPPP---PPSSLPRERFFSALREGL---------------------------------RYV---  214 (524)
T ss_pred             HHHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHH---------------------------------HHH---
Confidence            99998888766554433221   111111000010000000                                 000   


Q ss_pred             hhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCcc---ccc
Q 012514          181 AILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPA---SVF  257 (462)
Q Consensus       181 ~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~---~~~  257 (462)
                                              ...+.+..++..   ..+|.....-....+...+.+   .++    ..+.   .+.
T Consensus       215 ------------------------~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a~~---~l~----~~a~~yGll~  260 (524)
T PF05977_consen  215 ------------------------RSSPPLRSVLLR---SFLFNLFASAVWALLPLFARD---VLG----GGASGYGLLL  260 (524)
T ss_pred             ------------------------hcchHHHHHHHH---HHHHHHhhhHHHHhhhHHHHH---HhC----CcHHHHHHHH
Confidence                                    000111111111   111111111011112222321   111    1122   233


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514          258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA  337 (462)
Q Consensus       258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli  337 (462)
                      +.-++.     -+.+.++.+..++.      ++..+-+..+.++.+++++.+++.                  -+.|..+
T Consensus       261 a~~gvG-----ai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~------------------~~~~~~~  311 (524)
T PF05977_consen  261 AAFGVG-----AILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS------------------PSFWLAL  311 (524)
T ss_pred             HHHHHH-----HHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc------------------hHHHHHH
Confidence            222333     33334444433442      234445667777777777666543                  2345556


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          338 PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       338 ~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +..++.|++-.....+....+.+.+|++++|+.++++......+..+|+.+.+.+
T Consensus       312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~l  366 (524)
T PF05977_consen  312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFL  366 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778999999999999999999999999999999999877766666666665543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.16  E-value=7.8e-09  Score=106.86  Aligned_cols=86  Identities=12%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---hhhhhccchhhHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVV---VYVQEHVSWGAAD   99 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~---~~l~~~~g~~~~F   99 (462)
                      +.+.++++..+.++|.|...+...++++|.+++++      +..++++++.+.++|.++++.++   +.+.+..+|++.|
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            34678899999999999999999999999987543      25788999999999999999999   7776778999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 012514          100 VIITIVMAVSLLIFI  114 (462)
Q Consensus       100 ~i~~i~~~~~~iifl  114 (462)
                      .+.++..++.++..+
T Consensus       200 ~~~~~~~~~~~~~~~  214 (481)
T TIGR00879       200 GLQLIPAGLLFLGLF  214 (481)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            997666665554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.16  E-value=8e-09  Score=108.92  Aligned_cols=310  Identities=13%  Similarity=0.036  Sum_probs=162.5

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.++|.|++.|...+.+.+.+.+++     ++.++++++....++|..+||.+++++.++.||++.|++.
T Consensus        93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~  167 (495)
T PRK14995         93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLIN  167 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence            47888999999999999999988888888775422     1367899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchh-H-----HHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTP-M-----LQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEF  176 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~-~-----~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  176 (462)
                      ....++.+++.....+.-++++.++..... +     ...+..+++..... +.+.....       ..      -....
T Consensus       168 ~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-------~~------~~~~~  233 (495)
T PRK14995        168 VPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKG-FLSLWVTS-------LT------LLTGA  233 (495)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcccc-CCchHHHH-------HH------HHHHH
Confidence            776666655443332221111111111111 0     01112222221000 00000000       00      00000


Q ss_pred             -hhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCee-eCcc
Q 012514          177 -LDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFL-IPPA  254 (462)
Q Consensus       177 -ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~-ip~~  254 (462)
                       +-.+....+.. ...+..|+++++..      .+.......   ......+.-....+..+-+...   |  +. ...+
T Consensus       234 ~~l~~f~~~e~~-~~~p~~~~~lf~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~lq~v~---g--~s~~~ag  298 (495)
T PRK14995        234 LLLGLFIRTQLA-ASRPMIDMRLFTHR------IILSGVVMA---MTAMITLVGFELLMAQELQFVH---G--LSPLEAG  298 (495)
T ss_pred             HHHHHHHHHHhc-CCCCCcCHHHhCCc------ccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHc---C--CCHHHHH
Confidence             00000000000 00011122222211      111111111   1111111000011111111111   1  10 1112


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      .+.....+...+..|+..++.    +|.+       +.+-+..|+++.+++++.......               ..+.+
T Consensus       299 ~~~~~~~~~~~~~~~~~g~l~----~r~g-------~~~~~~~g~~~~~~~~~~l~~~~~---------------~~~~~  352 (495)
T PRK14995        299 MFMLPVMVASGFSGPIAGILV----SRLG-------LRLVATGGMALSALSFYGLAMTDF---------------STQQW  352 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHcC-------chHHHHHHHHHHHHHHHHHHHhcC---------------CCchH
Confidence            333334555666666666644    3432       222345677777777765543211               12334


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +.....++.++|-.+..+.....+.+..|++.+|..++++.+...+|..+|..+.+.+
T Consensus       353 ~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        353 QAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455678899999999999999999999999999999999998888888777666544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.14  E-value=8.1e-09  Score=119.59  Aligned_cols=285  Identities=13%  Similarity=0.041  Sum_probs=160.6

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++.++.++|.+++.|...+++.|.+++++      +..+.+++.++.++|.++||.++|++....+|+..|.+.
T Consensus       107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~  180 (1140)
T PRK06814        107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL  180 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            47889999999999999999999999999998643      357899999999999999999999999989999998544


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      ++..++++++....    ++.+++....+.                  .                  ........+... 
T Consensus       181 ~~~~~~~~~~~~~~----~~~~~~~~~~~~------------------~------------------~~~~~~~~~~~~-  219 (1140)
T PRK06814        181 MGIAVLGWLASLFI----PKTGNAAPDLKI------------------D------------------RNIIRSTITLLK-  219 (1140)
T ss_pred             HHHHHHHHHHHhhC----CCCCCCCCCCee------------------c------------------cchHHHHHHHHH-
Confidence            44333333322221    111111000000                  0                  000000000000 


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV  262 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l  262 (462)
                                          .+-..+.+   ..+.+....++.++....+.+..+...   .++ .-..-.+++.+...+
T Consensus       220 --------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g-~~~~~~g~~~~~~~~  272 (1140)
T PRK06814        220 --------------------YAKADKRI---WLAILGISWFWLVGAVVLSQLPLLAKE---TLG-GDENVATLFLAVFSV  272 (1140)
T ss_pred             --------------------HHhcCchH---HHHHHHHHHHHHHHHHHHHHhHHHHHH---HcC-CchHHHHHHHHHHHH
Confidence                                00000111   122222233333332222222222211   112 000112345566666


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH-hhhhcccCCC-CCCcccchhhHHHHH
Q 012514          263 GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKK-RLGVVEENPT-KGSLSMSVFWLAPQS  340 (462)
Q Consensus       263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~-~~~~~~~~g~-~~~~~~s~~wli~~~  340 (462)
                      ..++...+..++.    +++       ...+.+.+|.++.+++.+.+++.... ......--.. .-....+.|+++..+
T Consensus       273 g~~ig~~~~g~l~----~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (1140)
T PRK06814        273 GVAVGSFLASKLS----EGR-------ITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDL  341 (1140)
T ss_pred             HHHHHHHHHHHHh----CCc-------eeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHH
Confidence            6666666666532    221       12233455555555554433331000 0000000000 000013455666778


Q ss_pred             HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++.+++..+..+...+++.+.+|++.+|.++|++.+...+|..+++.+.+.+
T Consensus       342 ~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        342 FGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999988877754

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.12  E-value=7.7e-09  Score=107.87  Aligned_cols=283  Identities=13%  Similarity=0.048  Sum_probs=149.1

Q ss_pred             hHHHHHH-HHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           24 EVVFFLA-IYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        24 ~~~~~~~-L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      .+.++.+ .++.++|.|..-+...+...+.+++       ++.++.++.+.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus       107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~  179 (455)
T TIGR00892       107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL  179 (455)
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            4444443 3566888887655556677776631       1257899999999999999999999999989999999998


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      ++..+++.+...+.++.-..  ++..+...            ....+....   .       .    ........+..  
T Consensus       180 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~------------~~~~~~~~~---~-------~----~~~~~~~~~~~--  229 (455)
T TIGR00892       180 GGLLLHCCVCGALMRPVGPS--QRVSKSKS------------KEGLPPDGS---T-------K----KLSKKSTAEKI--  229 (455)
T ss_pred             HHHHHHHHHHHHHhCCCCcc--cccccccc------------cccCCCCCc---c-------c----cccccchhhhh--
Confidence            88777665544433321100  00000000            000000000   0       0    00000000000  


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV  262 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l  262 (462)
                         .     ...+++++     .+ +.+   ....+...+....+.+..+.+..+..  +....   ....+.+.++..+
T Consensus       230 ---~-----~~~~~~~~-----~~-~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s---~~~~g~~~~~~~~  287 (455)
T TIGR00892       230 ---N-----RFLDFSLF-----TH-RGF---LVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD---EYEAAFLLSIIGF  287 (455)
T ss_pred             ---h-----hhcchHHh-----cC-chH---HHHHHHHHHHHHHccchHHHHHHHHH--HcCCC---HHHHHHHHHHHHH
Confidence               0     00000000     01 111   22222222233333222222222222  11111   0112345555566


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCccch--hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHH
Q 012514          263 GMIISVTFYEKILVPVLRRATGNERGIQILQR--IGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQS  340 (462)
Q Consensus       263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~k--i~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~  340 (462)
                      ..++..|+..++..    |...     ++.++  +.+++++.+++++.....                  .+.++++...
T Consensus       288 ~~~~~~~~~g~l~d----~~~~-----~~~~~~~~~~~~~~~~l~~ll~~~~------------------~~~~~~~i~~  340 (455)
T TIGR00892       288 VDIFARPSCGLIAG----LKWI-----RPHVQYLFSFALLFNGLTHLLCALA------------------GDYTGLVIYC  340 (455)
T ss_pred             HHHHHHHHHHHHhc----cccc-----CHHHHHHHHHHHHHHHHHHHHHHHh------------------chHHHHHHHH
Confidence            66666666665432    2111     12222  233444444443332211                  1345555667


Q ss_pred             HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++.+++.....+...+.+.+..|++.+|..+|++.....+|+.+|+.+.+.+
T Consensus       341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l  392 (455)
T TIGR00892       341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL  392 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence            8889999999999999999999999999999999999999999998887643

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.12  E-value=3.8e-09  Score=104.96  Aligned_cols=266  Identities=18%  Similarity=0.265  Sum_probs=156.6

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT  103 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~  103 (462)
                      .+.++++..+.++|.+...|...+++.|.+++++      +.+.+++...+.++|.++++.+++++.++++|++.|.+.+
T Consensus        85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~  158 (352)
T PF07690_consen   85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA  158 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred             HHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence            4588899999999999999999999999998754      2578999999999999999999999998899999999988


Q ss_pred             HHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhhh
Q 012514          104 IVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAIL  183 (462)
Q Consensus       104 i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i~  183 (462)
                      +..+++.++.....+   +++++...               ..+   .                  +.+  + ..+.   
T Consensus       159 ~~~~~~~il~~~~~~---~~~~~~~~---------------~~~---~------------------~~~--~-~~~~---  193 (352)
T PF07690_consen  159 ILSLIAAILFILFLP---EPPPPRER---------------ESP---K------------------ESE--S-KKPK---  193 (352)
T ss_dssp             HHHHHHHHHHHCCC------STTTT-----------------SS---T------------------TTT-----HHH---
T ss_pred             chhhhhhhhHhhhhh---hccccccc---------------ccc---c------------------ccc--c-cccc---
Confidence            888888764333211   11111000               000   0                  000  0 0000   


Q ss_pred             cCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCee--eCccccchhhH
Q 012514          184 EDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFL--IPPASVFGLTA  261 (462)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~--ip~~~~~~~n~  261 (462)
                       +.      ...++     ...+.+.+.   .+++....+...+.........+   +....+  +.  .....+..+..
T Consensus       194 -~~------~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~--~~~~~~~~~~~~~~~  253 (352)
T PF07690_consen  194 -PL------KPGFK-----SLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLY---LQEVLG--FSGPSQAGLLFSIFG  253 (352)
T ss_dssp             -CC------CH-CT-----HHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHH---CCHHHH--CCTHHHHHHHHHHHH
T ss_pred             -cc------ccccc-----cccccchhh---hhhhhhhHHHHHHHHhhcccchh---hhhccC--CCHHHHHHHHHHHHH
Confidence             00      00010     111111111   12222222222222222222221   111111  11  11123344445


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHH
Q 012514          262 VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSI  341 (462)
Q Consensus       262 l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~  341 (462)
                      +..++..++..++.    +|.       +..++..+......++.+...+...               ..+..|.+...+
T Consensus       254 ~~~~~~~~~~~~l~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~  307 (352)
T PF07690_consen  254 IVGIIGSLLAGRLS----DRF-------GRRRRLLIAILLLILGALGLLLLPF---------------SSSPVWLIIALF  307 (352)
T ss_dssp             HHHHHHHHHHHHHH----HHT-------TCHHHHHHHHHHHHHHHHHHCCSHH---------------HCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHc-------CcHHHHHHHHHHHHHHHHHHHHHHH---------------hhhHHHHHHHHH
Confidence            55555555655544    332       2233333444444444433332211               123456666778


Q ss_pred             HHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHH
Q 012514          342 ISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSS  386 (462)
Q Consensus       342 l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~  386 (462)
                      +.+++..+..+.....+.+..|++.+|.++|+.....++|..+|+
T Consensus       308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  308 LIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            899999999999999999999999999999999999999998874

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.12  E-value=3.2e-08  Score=103.30  Aligned_cols=84  Identities=12%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhhHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV-SWGAADVII  102 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i~  102 (462)
                      ...+++..++.++|.|..-|.......+.+++++      +.++.++++.+.++|.++++.+++++.+.. ||+..|.+.
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~  204 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF  204 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence            5567888889999999999999999999886432      368899999999999999999999998884 999999987


Q ss_pred             HHHHHHHHHHH
Q 012514          103 TIVMAVSLLIF  113 (462)
Q Consensus       103 ~i~~~~~~iif  113 (462)
                      ++..++..++.
T Consensus       205 ~~~~~~~~~~~  215 (465)
T TIGR00894       205 GIVGCAWSLLW  215 (465)
T ss_pred             hHHHHHHHHHH
Confidence            77665554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.09  E-value=6e-08  Score=102.15  Aligned_cols=86  Identities=6%  Similarity=0.125  Sum_probs=70.3

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh-ccchhhHHH
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE-HVSWGAADV  100 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~-~~g~~~~F~  100 (462)
                      .+.+.+++..++.+++.+...+...++..|.+++++      +.++.++.-.+.++|.++++.+.+++.+ ..||+..|.
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~  178 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW  178 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            346777778888899999999999999999987432      2567888889999999999999999988 469999999


Q ss_pred             HHHHHHHHHHHHH
Q 012514          101 IITIVMAVSLLIF  113 (462)
Q Consensus       101 i~~i~~~~~~iif  113 (462)
                      +.++.+++..+..
T Consensus       179 i~a~l~ll~~l~~  191 (491)
T PRK11010        179 LMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHH
Confidence            9877766665443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.08  E-value=5.3e-08  Score=101.75  Aligned_cols=84  Identities=13%  Similarity=0.093  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccch
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSW   95 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~   95 (462)
                      ...++++.++.++|.|+.-|...++++|.+++++      +..+.+++-.+..+|.++++.+++.+.        +.+||
T Consensus       120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  193 (479)
T PRK10077        120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW  193 (479)
T ss_pred             HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCh
Confidence            5667889999999999999999999999987532      256788888899999999887766543        35799


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 012514           96 GAADVIITIVMAVSLLIF  113 (462)
Q Consensus        96 ~~~F~i~~i~~~~~~iif  113 (462)
                      ++.|.+.++..++..+..
T Consensus       194 r~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        194 RYMFASEAIPALLFLMLL  211 (479)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999998777666655433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.07  E-value=4.5e-08  Score=98.25  Aligned_cols=262  Identities=12%  Similarity=0.113  Sum_probs=147.4

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc--------
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS--------   94 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g--------   94 (462)
                      +.+.++....+.+++.+...+...+++.|.+++++      +..+.++...+.++|.++++.+++++..+.+        
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~  155 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL  155 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            44555555556778888889999999999985422      2578899999999999999999999888778        


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514           95 WGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL  174 (462)
Q Consensus        95 ~~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  174 (462)
                      |+..|.+.++..+++.++.+...+.-.+.+++++   +.                                    +.   
T Consensus       156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~---~~------------------------------------~~---  193 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPK---PL------------------------------------TQ---  193 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccCCCcccccch---hH------------------------------------HH---
Confidence            9999999888777766543332221000000000   00                                    00   


Q ss_pred             hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCcc
Q 012514          175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPA  254 (462)
Q Consensus       175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~  254 (462)
                      ...+.                ++     +.-..+...++..+.+...++...+.+..+.+..+...    .|    .+++
T Consensus       194 ~~~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g----~~~~  244 (356)
T TIGR00901       194 AVLKP----------------IR-----EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD----MG----FSKE  244 (356)
T ss_pred             HHHHH----------------HH-----HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC----CCHH
Confidence            00000                00     00000010112333333444444444444444333322    23    3343


Q ss_pred             cc---chhhHH-HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 012514          255 SV---FGLTAV-GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLS  330 (462)
Q Consensus       255 ~~---~~~n~l-~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~  330 (462)
                      ..   ...+.. ..++..++..++.    +|.       +..+.+.++.++.+++.....+.... .+... .     ..
T Consensus       245 ~~g~~~~~~~~~~~~~g~~~~g~l~----~r~-------g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~-~-----~~  306 (356)
T TIGR00901       245 EIALVAKINGLLGAILGGLIGGIIM----QPL-------NILYALLLFGIVQALTNAGFVWLASN-GHHDG-I-----TF  306 (356)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHH----hhh-------hHHHHHHHHHHHHHHHHHHHHHHHhc-Ccccc-c-----cc
Confidence            32   222232 2333334444433    332       23334666777776666544433110 00000 0     01


Q ss_pred             cchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHh
Q 012514          331 MSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIG  379 (462)
Q Consensus       331 ~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~  379 (462)
                      .+.++++...++.++++.+..+....+..+.+|+++||.++|+.....+
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            2344566677888999999999999999999999999999999876543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.06  E-value=2e-08  Score=104.92  Aligned_cols=308  Identities=11%  Similarity=0.086  Sum_probs=166.1

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.++|.|...|...+++.|.+++++      +.+++++++.+.++|..+|+.+++++.++++|++.|.+.
T Consensus        89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~  162 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN  162 (485)
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence            47788899999999999999999999999986422      367899999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHH--------HHHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPML--------QVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL  174 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~--------~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  174 (462)
                      ++..++..++.....+.-+  +.+.++.....        ..+.....+.....+      ..... ........-....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~  233 (485)
T TIGR00711       163 VPIGIIVVVVAFFILPRDK--PAASENFDFLGLLLLSVGLGSLLYGLSEGPERGW------FDSNE-ILILSITGLVAII  233 (485)
T ss_pred             hHHHHHHHHHHHHHcCCcc--ccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC------CCchH-HHHHHHHHHHHHH
Confidence            7666655554333222211  11111111110        011111111110000      00000 0000000000000


Q ss_pred             hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCc-
Q 012514          175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPP-  253 (462)
Q Consensus       175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~-  253 (462)
                      .+..+.  ...+.    +..++++++.      +.+   ....+...+....+......+..+..+   ..|    .++ 
T Consensus       234 ~~~~~~--~~~~~----~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g----~s~~  291 (485)
T TIGR00711       234 AFVVWE--LTDDN----PLVDLRLFKY------RNF---TIGCVYMSLLGLGLYGSFYLLPLYLQQ---VLG----YTAL  291 (485)
T ss_pred             HHHHHH--HcCCC----CccCHHHHcC------CCh---HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC----CCHH
Confidence            000000  00000    0011111111      111   111111222222222222222222111   112    222 


Q ss_pred             --cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 012514          254 --ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSM  331 (462)
Q Consensus       254 --~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~  331 (462)
                        +.+.....+..++..|+..++.    +|.       +..+-+.+|.++.+++++...+.-              ....
T Consensus       292 ~~g~~~~~~~~~~~~~~~~~g~l~----~r~-------~~~~~~~~g~~~~~~~~~~~~~~~--------------~~~~  346 (485)
T TIGR00711       292 QAGLHILPVGLAPMLSSPIAGRMG----DKI-------DPRKLVTIGLILYAVGFYWRAFTF--------------TPDT  346 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----hhc-------CcHHHHHHHHHHHHHHHHHHhccC--------------CCCC
Confidence              3445555666677777776643    232       222335567777777766554210              0123


Q ss_pred             chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +.++.+...++.++|..+..+.....+.+..|++.+|.++|++.....+|+.+|+.+.+.+
T Consensus       347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI  407 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555678899999999888888888899999999999999999999998888776644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12382 putative transporter; Provisional

Probab=99.05  E-value=1.3e-07  Score=96.39  Aligned_cols=276  Identities=11%  Similarity=0.169  Sum_probs=158.7

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +...++++..+.++|.+...|...+.+.|..++++      +.++++++..+.++|..+++.+++++.+.+||+..+.+.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  184 (392)
T PRK12382        111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            46778888899999999999988889999886432      257889999999999999999999998889998877664


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      .+..++..   ...++ .++.+++++                      .                  +.   +..+    
T Consensus       185 ~~~~~~~~---~~~~~-~~~~~~~~~----------------------~------------------~~---~~~~----  213 (392)
T PRK12382        185 MVLPLLAW---AFNGT-VRKVPAHAG----------------------E------------------RP---SLWS----  213 (392)
T ss_pred             HHHHHHHH---HHHHh-ccCCCCCcc----------------------c------------------Cc---hHHH----
Confidence            44332222   22111 111011000                      0                  00   0000    


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHh-HHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhH
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLN-VIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTA  261 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~-~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~  261 (462)
                                             ..|.+.+ .+.+.+....+....    +.......  +.  +  +. +.........
T Consensus       214 -----------------------~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~--~~--~--~~-~~~~~~~~~~  259 (392)
T PRK12382        214 -----------------------VVGLIWKPGLGLALQGVGFAVIG----TFVSLYFA--SK--G--WA-MAGFTLTAFG  259 (392)
T ss_pred             -----------------------HHHHHHHhHHHHHHHHHHHhHHH----HHHHHHHH--hc--C--Cc-hhHHHHHHHH
Confidence                                   0000000 001111111111110    00111111  11  1  11 1122233344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHH
Q 012514          262 VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSI  341 (462)
Q Consensus       262 l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~  341 (462)
                      +..++..++..++.    +|.       ++.+.+.++.++.+++++.....                  -+.++.+...+
T Consensus       260 ~~~~~~~~~~g~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  310 (392)
T PRK12382        260 GAFVLMRVLFGWMP----DRF-------GGVKVAIVSLLVETVGLLLLWLA------------------PTAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHHHHH----Hhc-------CCCeehHHHHHHHHHHHHHHHHc------------------ccHHHHHHHHH
Confidence            44455555555433    332       23344566777777776654432                  12344555678


Q ss_pred             HHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHH
Q 012514          342 ISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLA  421 (462)
Q Consensus       342 l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la  421 (462)
                      +.++++....|.....+.+..|++.||..+|++.....+|+.+++.+.+.+..            ..+   ....|.+.+
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~------------~~g---~~~~~~~~~  375 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT------------SFG---YPSVFLAGA  375 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhC---chHHHHHHH
Confidence            89999999999888889999999999999999999999999998887764331            111   234466666


Q ss_pred             HHHHHHHHHHHh
Q 012514          422 ALVAANLFVYVV  433 (462)
Q Consensus       422 ~l~~~~~v~~~~  433 (462)
                      ++.++..++.+.
T Consensus       376 ~~~~~~~~~~~~  387 (392)
T PRK12382        376 ISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHh
Confidence            666666555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.04  E-value=2.7e-07  Score=93.21  Aligned_cols=85  Identities=9%  Similarity=0.146  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+++.+...+...++..|.+++++      +.+++++.+...++|..+++.+++++.+..+|++.|.+.
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  151 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL  151 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            35677888889999999999999999999876432      257899999999999999999999999888999999987


Q ss_pred             HHHHHHHHHHH
Q 012514          103 TIVMAVSLLIF  113 (462)
Q Consensus       103 ~i~~~~~~iif  113 (462)
                      ++..++..+..
T Consensus       152 ~~~~~~~~~~~  162 (377)
T PRK11102        152 ALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHH
Confidence            77666665443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.03  E-value=1.4e-07  Score=94.96  Aligned_cols=88  Identities=8%  Similarity=0.153  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.+++...+.+.+.+...|...++..+..++++    |.+....++.+...++|..+|+.+++++.+.+||++.|.+.
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            35556666666676777777887787777654322    11122357788889999999999999999889999999998


Q ss_pred             HHHHHHHHHHHH
Q 012514          103 TIVMAVSLLIFI  114 (462)
Q Consensus       103 ~i~~~~~~iifl  114 (462)
                      ++..++..++.+
T Consensus       162 ~~~~~~~~~~~~  173 (375)
T TIGR00899       162 ALAFVLCGVLVW  173 (375)
T ss_pred             HHHHHHHHHHHH
Confidence            877666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.03  E-value=3.1e-07  Score=92.68  Aligned_cols=87  Identities=8%  Similarity=0.134  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.++|.+...+...+++.|.+++++      +.+.+++++...++|..+++.+++++.++.+|+..|.+.
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            46778888899999999999999999999987432      257899999999999999999999998889999999987


Q ss_pred             HHHHHHHHHHHHH
Q 012514          103 TIVMAVSLLIFII  115 (462)
Q Consensus       103 ~i~~~~~~iifl~  115 (462)
                      ++..++..+....
T Consensus       166 ~~~~~~~~~~~~~  178 (385)
T TIGR00710       166 SLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776666554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.98  E-value=1.7e-07  Score=96.68  Aligned_cols=110  Identities=14%  Similarity=0.149  Sum_probs=73.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      +..+..+..++..|+..++.    +|.+       ..+-+.+|.++.+++++...+..                 .+.++
T Consensus       262 ~~~~~~i~~ii~~~~~~~l~----~r~g-------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~  313 (437)
T TIGR00792       262 MGSIAIVAGLIGVLLFPRLV----KKFG-------RKILFAGGILLMVLGYLIFFFAG-----------------SNLPL  313 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhC-------cHHHHHHHHHHHHHHHHHHHHcc-----------------hhHHH
Confidence            44445556666666666544    3432       22335567777777766554321                 12334


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVP-------DSMRSLGIAFYLSVIGAANFLSSFLITVVD  393 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~  393 (462)
                      .+...++.+++.....+...+++.+.+|       ++.+|.++|++.+...+|..+++.+.+.+-
T Consensus       314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll  378 (437)
T TIGR00792       314 ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL  378 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556678899999999999999888765       567899999999988888888877776543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11043 putative transporter; Provisional

Probab=98.98  E-value=1.9e-07  Score=95.38  Aligned_cols=85  Identities=9%  Similarity=0.142  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.++|.+...+...++..|.+++++      +.+.++......++|..+++.+++++.+++||+..|.+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~  166 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL  166 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            46777888888899988888888889999886532      246788888889999999999999999999999999987


Q ss_pred             HHHHHHHHHHH
Q 012514          103 TIVMAVSLLIF  113 (462)
Q Consensus       103 ~i~~~~~~iif  113 (462)
                      ++..++..+..
T Consensus       167 ~~~~~~~~~~~  177 (401)
T PRK11043        167 FAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHH
Confidence            76666655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.97  E-value=5.2e-07  Score=91.86  Aligned_cols=84  Identities=17%  Similarity=0.227  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+++.|...+...+++.|.+++++      +.+++++++...++|..+++.+++++.+..+|+..|.+.
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            35667778888999999989999999999886432      257889999999999999999999988888999999987


Q ss_pred             HHHHHHHHHH
Q 012514          103 TIVMAVSLLI  112 (462)
Q Consensus       103 ~i~~~~~~ii  112 (462)
                      ++..++..+.
T Consensus       164 ~~~~~i~~~~  173 (392)
T PRK10473        164 AAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHH
Confidence            7766655554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.95  E-value=5.3e-07  Score=92.20  Aligned_cols=83  Identities=7%  Similarity=0.105  Sum_probs=70.8

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i  101 (462)
                      .+.+.+++..++.+++.|...|...++..|.+++++      +.++..+.+.+.|+|.++++.+++++.+..||++.|.+
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  179 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA  179 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            357888999999999999999999999999986432      25789999999999999999999999998999999998


Q ss_pred             HHHHHHHHH
Q 012514          102 ITIVMAVSL  110 (462)
Q Consensus       102 ~~i~~~~~~  110 (462)
                      .++..++..
T Consensus       180 ~~~l~~~~~  188 (394)
T PRK10213        180 AAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHH
Confidence            766555443

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.94  E-value=3.6e-07  Score=93.34  Aligned_cols=72  Identities=8%  Similarity=0.184  Sum_probs=51.2

Q ss_pred             cCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 012514           39 GGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFI  114 (462)
Q Consensus        39 G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~~~~iifl  114 (462)
                      +...|...++..|..++++    |....+.++...+.++|.++|+.+++++.+++||+..|.+.++..++..+..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        120 STANPQMFALAREHADKTG----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             HhhHHHHHHHHHHHhhhcc----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            3556777777777554322    11122336888899999999999999999889999999987766655554433

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.94  E-value=3.3e-07  Score=94.92  Aligned_cols=82  Identities=20%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.+++..++.+++.|..-|...+.+.+.+++++      +..++++++.+.++|..+++.+++++.+.+||++.|.+.
T Consensus       110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~  183 (434)
T PRK11663        110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA  183 (434)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            35666667777888889888999999999986432      367899999999999999999999999989999999987


Q ss_pred             HHHHHHHH
Q 012514          103 TIVMAVSL  110 (462)
Q Consensus       103 ~i~~~~~~  110 (462)
                      ++..++..
T Consensus       184 ~i~~~~~~  191 (434)
T PRK11663        184 GIIAIVVG  191 (434)
T ss_pred             HHHHHHHH
Confidence            66555443

>TIGR00895 2A0115 benzoate transport

Probab=98.93  E-value=4.4e-07  Score=91.64  Aligned_cols=84  Identities=15%  Similarity=0.239  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.++|.|...+...+++.|.+++++      +.++++++..+.++|..+++.+.+++.++.+|+..|.+.
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  177 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG  177 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence            46778888999999999999999999999986422      367899999999999999999999999989999999987


Q ss_pred             HHHHHHHHHH
Q 012514          103 TIVMAVSLLI  112 (462)
Q Consensus       103 ~i~~~~~~ii  112 (462)
                      ++..++..++
T Consensus       178 ~~~~~~~~~~  187 (398)
T TIGR00895       178 GIAPLLLLLL  187 (398)
T ss_pred             hhHHHHHHHH
Confidence            6554444433

>PRK09848 glucuronide transporter; Provisional

Probab=98.93  E-value=2.4e-07  Score=96.35  Aligned_cols=86  Identities=12%  Similarity=0.094  Sum_probs=64.9

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCch-----
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDS-----  365 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~-----  365 (462)
                      ..+.+.+|.++.+++++...+..                ..+.++.+...++.++|+.+..+...++..+.+|++     
T Consensus       293 ~~~~~~~g~~~~~i~~~~~~~~~----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g  356 (448)
T PRK09848        293 KKNTFLIGALLGTCGYLLFFWVS----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTG  356 (448)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcC----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhC
Confidence            34556778888777776554311                124455556678899999999999999999998864     


Q ss_pred             --hhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          366 --MRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       366 --~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                        .+|.++|++.+..-+|..+|+.+.+.+
T Consensus       357 ~r~~G~~~~~~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        357 VRIEGLTYSLFSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              569999999999988888888777644

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.92  E-value=6.5e-07  Score=92.06  Aligned_cols=79  Identities=14%  Similarity=0.277  Sum_probs=66.9

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i  101 (462)
                      .+.+.++++..+.++|.|...+...++..|.+++++      +.++.+++..+.++|.++++.+.+++.+.++|++.|.+
T Consensus       104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            347788889999999999999999999999986532      25678899999999999999999999888999999988


Q ss_pred             HHHHH
Q 012514          102 ITIVM  106 (462)
Q Consensus       102 ~~i~~  106 (462)
                      +++..
T Consensus       178 ~~~~~  182 (426)
T PRK12307        178 GLLPV  182 (426)
T ss_pred             HHHHH
Confidence            55433

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.91  E-value=2.9e-07  Score=96.70  Aligned_cols=79  Identities=18%  Similarity=0.237  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+++.|+..+...+++.|.+++++      +..++++++.+.++|.++++.+.+++.++++|++.|.+.
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~  180 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG  180 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            46778888999999999999999999999986432      257789999999999999999999999999999999875


Q ss_pred             HHHHH
Q 012514          103 TIVMA  107 (462)
Q Consensus       103 ~i~~~  107 (462)
                      ++..+
T Consensus       181 ~~~~~  185 (496)
T PRK03893        181 ILPII  185 (496)
T ss_pred             HHHHH
Confidence            44433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.91  E-value=1.1e-06  Score=89.48  Aligned_cols=83  Identities=16%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+++.|...+...++..|.+++++      +.++.+++..+.++|.+++|.+++++.+..||+..|.+.
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~  168 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL  168 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            46778888888999999888888888888775422      246778888899999999999999998888999999987


Q ss_pred             HHHHHHHHH
Q 012514          103 TIVMAVSLL  111 (462)
Q Consensus       103 ~i~~~~~~i  111 (462)
                      ++..++..+
T Consensus       169 ~~~~~~~~~  177 (394)
T PRK11652        169 LLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHH
Confidence            665554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.91  E-value=1.2e-07  Score=97.66  Aligned_cols=138  Identities=10%  Similarity=0.075  Sum_probs=87.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      .+.+++.+..++..++..++.    +|.+       +.+.+.++.++.+++++..++.                  .+++
T Consensus       266 ~~~~~~~~~~~~~~~~~g~l~----dr~g-------~~~~~~~~~~l~~~~~~l~~~~------------------~~~~  316 (420)
T PRK09528        266 YLNSFQVFLEALIMFFAPFII----NRIG-------AKNALLLAGTIMAVRIIGSGFA------------------TGPL  316 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHhC-------cchhhHHHHHHHHHHHHHHHhc------------------ccHH
Confidence            455666666666666666644    3332       2234566777777766655432                  2355


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF-YLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL  413 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~-~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l  413 (462)
                      +++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+.+.+            .|..+   .
T Consensus       317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l------------~~~~G---~  381 (420)
T PRK09528        317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNL------------YDSIG---F  381 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHH------------HHhhC---c
Confidence            666677888998888888888999999999999887654 5566777777777666533            22221   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 012514          414 DKFYWLLAALVAANLFVYVVVAR  436 (462)
Q Consensus       414 ~~~f~~la~l~~~~~v~~~~~~~  436 (462)
                      ...|..++++.++..++.+...|
T Consensus       382 ~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        382 QGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc
Confidence            33466667766665555554433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.90  E-value=2.3e-07  Score=92.89  Aligned_cols=84  Identities=15%  Similarity=0.086  Sum_probs=64.6

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.++|.|...+...+...+.++++       +..+.+++..+.++|.++++.+.+.+.+..+|++.|.+.
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~  162 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM  162 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence            4677888888999999988888888777776531       256789999999999887666666666778999999987


Q ss_pred             HHHHHHHHHHH
Q 012514          103 TIVMAVSLLIF  113 (462)
Q Consensus       103 ~i~~~~~~iif  113 (462)
                      ++..++..+..
T Consensus       163 ~~~~~~~~~~~  173 (377)
T TIGR00890       163 GIIFLLVIVLG  173 (377)
T ss_pred             HHHHHHHHHHH
Confidence            77766655443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.90  E-value=1.4e-06  Score=89.80  Aligned_cols=84  Identities=11%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +...++++.++.++|.|..-+...+...|.+++++      +.+.++++..+.++|..+|+.+++++.++.||++.|.+.
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~  176 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII  176 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            46788899999999998776666777888876532      246799999999999999999999998888999999988


Q ss_pred             HHHHHHHHHH
Q 012514          103 TIVMAVSLLI  112 (462)
Q Consensus       103 ~i~~~~~~ii  112 (462)
                      ++..+++.+.
T Consensus       177 ~~~~~i~~~~  186 (413)
T PRK15403        177 AVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHH
Confidence            7776666554

>TIGR00898 2A0119 cation transport protein

Probab=98.90  E-value=1.1e-06  Score=92.51  Aligned_cols=83  Identities=14%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++.++.++|.|+..+...+++.|.+++++      +..+..++..+.++|.++++.++.++.+   |++.|.+.
T Consensus       179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~  249 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV  249 (505)
T ss_pred             cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence            46788889999999999999999999999987543      2456777788889999999988877754   99999987


Q ss_pred             HHHHHHHHHHHH
Q 012514          103 TIVMAVSLLIFI  114 (462)
Q Consensus       103 ~i~~~~~~iifl  114 (462)
                      ++..++..+..+
T Consensus       250 ~i~~~~~~~~~~  261 (505)
T TIGR00898       250 SLPTFLFFLLSW  261 (505)
T ss_pred             HHHHHHHHHHHH
Confidence            776666655443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.89  E-value=7.1e-07  Score=91.17  Aligned_cols=80  Identities=16%  Similarity=0.311  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV-SWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i  101 (462)
                      +...++++.++.++|.|...+...+.+.|.+++ +      +..+.+++..+.++|..+|+.+++++.++. +|+..|.+
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~  168 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-R------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW  168 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-c------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            367788999999999999999999999888752 1      246788888999999999999999988875 89887765


Q ss_pred             HHHHHHHH
Q 012514          102 ITIVMAVS  109 (462)
Q Consensus       102 ~~i~~~~~  109 (462)
                      -++..++.
T Consensus       169 ~~~~~~~~  176 (393)
T PRK09705        169 WALPAVVA  176 (393)
T ss_pred             HHHHHHHH
Confidence            44443333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.89  E-value=6.4e-07  Score=90.99  Aligned_cols=67  Identities=13%  Similarity=0.001  Sum_probs=54.8

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSW   95 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~   95 (462)
                      +.+.++++.++.++|.|.+.|...+...|..++++      +.+.+++++.+.|+|..+|+.+.+++.+...+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  159 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMS  159 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            47788889999999999998888888887765421      25789999999999999999999998775433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.88  E-value=9.3e-07  Score=90.39  Aligned_cols=76  Identities=16%  Similarity=0.247  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHH
Q 012514           28 FLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMA  107 (462)
Q Consensus        28 ~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~  107 (462)
                      ++..++.++|.|++.|...+++.|.+++++      +.++.++.....++|.++||.++|++.+. .|...|.+.+...+
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~  164 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            556778999999999999999999997532      25789999999999999999999999874 47777777655544


Q ss_pred             HHH
Q 012514          108 VSL  110 (462)
Q Consensus       108 ~~~  110 (462)
                      ++.
T Consensus       165 ~~~  167 (393)
T PRK11195        165 LAA  167 (393)
T ss_pred             HHH
Confidence            443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.87  E-value=3.8e-06  Score=86.02  Aligned_cols=84  Identities=10%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-cchhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH-VSWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i  101 (462)
                      +.+.+++...+.++..+...|...++..|..++++      +.++..+..++.++|.++++.+.+++.+. .||+..|.+
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i  166 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL  166 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence            45656666666788899999999999999976532      25788888899999999999999888775 599999999


Q ss_pred             HHHHHHHHHHH
Q 012514          102 ITIVMAVSLLI  112 (462)
Q Consensus       102 ~~i~~~~~~ii  112 (462)
                      .++..++..+.
T Consensus       167 ~a~~~l~~~l~  177 (402)
T PRK11902        167 MAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHH
Confidence            77766655443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.87  E-value=7.2e-07  Score=103.43  Aligned_cols=267  Identities=14%  Similarity=0.104  Sum_probs=146.0

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc--------c-c
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH--------V-S   94 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~--------~-g   94 (462)
                      .+.++++.++.+++.|.+.|...+++.|.+++++      +..+++++..+.++|.++|+.+++++.+.        . +
T Consensus       103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~  176 (1146)
T PRK08633        103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILG  176 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence            6778888999999999999999999999987643      26789999999999999999999998765        2 2


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514           95 WGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL  174 (462)
Q Consensus        95 ~~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  174 (462)
                      |.+.+.+..+...+..+++.+..+.    .|..++...          ++.     .                  .....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----------~~~-----~------------------~~~~~  219 (1146)
T PRK08633        177 RIAPAGLVLLAVAVLGLIFAYRLPK----VPAAAPEVF----------DKK-----K------------------YLFPK  219 (1146)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCcC----CCCCCcccc----------ccc-----c------------------cccHH
Confidence            3333333222222222222221111    111000000          000     0                  00000


Q ss_pred             hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeee--C
Q 012514          175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLI--P  252 (462)
Q Consensus       175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~i--p  252 (462)
                      ...+....                     .-..+.+   ..+++...+++.......+.+..+..   ...+  +..  .
T Consensus       220 ~~~~~~~~---------------------l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g--~s~~~~  270 (1146)
T PRK08633        220 LLWRNLKL---------------------LRSDRVL---WLAIIGLSYFWFISQLAQANFPAYAK---EVLG--LDNTFQ  270 (1146)
T ss_pred             HHHHHHHH---------------------HhcCcHH---HHHHHHHHHHHHHHHHHHHhhHHHHH---HHhC--CCcHHH
Confidence            00000000                     0000111   11222223333322212222221111   1112  101  1


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514          253 PASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS  332 (462)
Q Consensus       253 ~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s  332 (462)
                      .+++.+...+..++..++..++.    +|.       .....+.+|.++.+++.+.....                  .+
T Consensus       271 ~g~~~~~~~ig~~~g~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------------~~  321 (1146)
T PRK08633        271 VQYLLAASAIGIGIGSLLAGRLS----GRH-------IELGLVPLGALGLALSLFLLPTA------------------PS  321 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----CCc-------eEccchhHHHHHHHHHHHHHHHh------------------hh
Confidence            23344444444445545544432    332       23334556777666666655432                  13


Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      .++++...++.+++..+..+....++.+.+|++.||.++|+..+...+|..++..+...
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~  380 (1146)
T PRK08633        322 LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL  380 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            45566677889999999999999999999999999999999998888888776655443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.86  E-value=1.7e-06  Score=90.09  Aligned_cols=332  Identities=13%  Similarity=0.034  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh--hhc----------
Q 012514           25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYV--QEH----------   92 (462)
Q Consensus        25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l--~~~----------   92 (462)
                      ..+.+++.+.-++.+...+...++++|..++++++    .+.+++|+.+..|+|+++|+.++++.  .+.          
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~  190 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG  190 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence            45566666777788888899999999999876432    24789999999999999999998875  221          


Q ss_pred             ---cchhhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCcccccccccccccccc
Q 012514           93 ---VSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLC  169 (462)
Q Consensus        93 ---~g~~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~  169 (462)
                         .+++..|.++++.++++.++-.+.-|..+..+++..+..               ..        +.++  ....   
T Consensus       191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---------------~~--------~~~~--~~~~---  242 (477)
T TIGR01301       191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---------------EA--------APPS--KHGE---  242 (477)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---------------hc--------cccc--ccch---
Confidence               166889999998888888766554333221011100000               00        0000  0000   


Q ss_pred             ccccchhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHh-ccCCCC-
Q 012514          170 HTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATM-NREIGN-  247 (462)
Q Consensus       170 ~~~~~~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~-~~~~g~-  247 (462)
                      .......++..     +      ..|            |.+.+++..-.+.-+=|..+-+..|.+.-+...- +.+-.. 
T Consensus       243 ~~~~~~i~~~~-----~------~mP------------~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~  299 (477)
T TIGR01301       243 EAFFGELFGAF-----K------YLP------------RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAK  299 (477)
T ss_pred             hhhHHHHHHHH-----H------HCC------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhH
Confidence            00000000000     0      011            2333445555555555555555555554332110 000000 


Q ss_pred             ---CeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchh-hHHHHHHHHHHHHHHHHHHHhhh---hc
Q 012514          248 ---GFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRI-GIGMLFSIATMVFAALVEKKRLG---VV  320 (462)
Q Consensus       248 ---g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki-~iG~~l~~l~~~~~~~~~~~~~~---~~  320 (462)
                         |... ..+-..+|.+...+    +..++.++.+|.+       ..++. .++.++.++|++...++.....+   ..
T Consensus       300 y~~gvr~-G~~~l~~~s~~~~i----~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~  367 (477)
T TIGR01301       300 YDDGVRA-GAFGLMLNSVVLGI----TSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYD  367 (477)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence               0000 12223334433333    3333333334432       22233 68888999999888876531100   00


Q ss_pred             ccCCCCCCcccc-hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCc--hhhhHHHHHHHHHHhHHHHHHHHHHhhcccccc
Q 012514          321 EENPTKGSLSMS-VFWLAPQSIISGVADGFALVGLQEYFYDQVPD--SMRSLGIAFYLSVIGAANFLSSFLITVVDHVTD  397 (462)
Q Consensus       321 ~~~g~~~~~~~s-~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~--~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~  397 (462)
                      ..+++-. .+.. .+..+..+.+.|++-......=++++.+..|+  +-.|.+||+.+.+..+...+.++..+.+...  
T Consensus       368 ~~~~~~~-~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~--  444 (477)
T TIGR01301       368 GDGESLP-PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQL--  444 (477)
T ss_pred             ccccccC-cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            0000000 0111 24556677889999999999999999999995  4569999999999999999998877754422  


Q ss_pred             cCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 012514          398 KSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARR  437 (462)
Q Consensus       398 ~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~  437 (462)
                            +.+ -|    .+.+.+-++.++++++.-+..-++
T Consensus       445 ------~g~-~~----~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       445 ------FGG-GN----LPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             ------cCC-CC----eeHHHHHHHHHHHHHHHHHHhCCC
Confidence                  111 11    233555556666666665555544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.84  E-value=2.1e-06  Score=89.46  Aligned_cols=83  Identities=16%  Similarity=0.173  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHhhhhhccchhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGL-LLGVTVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i  101 (462)
                      +.+.+++...+.+++.|...|...+...+.+++++      +..+.++++.+.++|. ++++++...+....+|+++|.+
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i  192 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM  192 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence            35667777888899999999988888998876432      2578899999999986 5566654444344599999998


Q ss_pred             HHHHHHHHHH
Q 012514          102 ITIVMAVSLL  111 (462)
Q Consensus       102 ~~i~~~~~~i  111 (462)
                      .++..++..+
T Consensus       193 ~~~~~~~~~~  202 (452)
T PRK11273        193 PAFAAILVAL  202 (452)
T ss_pred             HHHHHHHHHH
Confidence            7766665443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.82  E-value=8e-07  Score=89.46  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccchh
Q 012514           25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSWG   96 (462)
Q Consensus        25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~~   96 (462)
                      ..++++..+.++|.|...+...+++.|.+++++      +....++...+.++|.++++.+.+.+.        +.++|+
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~  170 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR  170 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence            357778889999999999999999999887543      257888999999999999988877654        357899


Q ss_pred             hHHHHHHHHHHHHHH
Q 012514           97 AADVIITIVMAVSLL  111 (462)
Q Consensus        97 ~~F~i~~i~~~~~~i  111 (462)
                      +.|.+.++..+++..
T Consensus       171 ~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       171 IPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887766555543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.79  E-value=8.9e-07  Score=91.33  Aligned_cols=145  Identities=15%  Similarity=0.174  Sum_probs=90.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      ...+++.+..++...+..++.    +|+       +..+-+.++.++.++++........              ...+.+
T Consensus       255 ~~~~~~~i~~i~~~~~~g~l~----dr~-------g~r~~l~~~~~~~~v~~~l~~~~~~--------------~~~~~~  309 (418)
T TIGR00889       255 IWMSLSQFSEIFFILTIPFFL----KRF-------GIKKVMLLSLVAWALRFGFFAYGDP--------------EYFGYA  309 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHh-------CcHHHHHHHHHHHHHHHHHHHHcCc--------------chhhHH
Confidence            344555555555555555543    332       2333456777777776655543210              011223


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHH-HHHhHHHHHHHHHHhhcccccccCCCccccCCCcc-c-
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYL-SVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNS-S-  411 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~-l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~-~-  411 (462)
                      .++...++.++++.+..+....++.+..|++.||.++|+.. ...++|..+|+.+.+.+.            |..+. + 
T Consensus       310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~------------~~~g~~~~  377 (418)
T TIGR00889       310 LLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV------------EKMFAYGT  377 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------HHhccccC
Confidence            34445688999999999999999999999999999999996 567888888887776432            11110 0 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514          412 -RLDKFYWLLAALVAANLFVYVVVAR  436 (462)
Q Consensus       412 -~l~~~f~~la~l~~~~~v~~~~~~~  436 (462)
                       ..+.-|...+++.++..++++++.|
T Consensus       378 ~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       378 FDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhC
Confidence             1233466666666666666666554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.77  E-value=5.8e-06  Score=87.09  Aligned_cols=76  Identities=21%  Similarity=0.307  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccchhh
Q 012514           26 VFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSWGA   97 (462)
Q Consensus        26 ~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~~~   97 (462)
                      .+.++.++.++|.|+.-|...+++.+.+++++      +..+..+...+.++|..+|+.+..++.        .++||++
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~  193 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI  193 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence            47888899999999999999999999987643      245677788888888888876655443        2589999


Q ss_pred             HHHHHHHHHH
Q 012514           98 ADVIITIVMA  107 (462)
Q Consensus        98 ~F~i~~i~~~  107 (462)
                      .|++.++..+
T Consensus       194 ~f~i~~~~~l  203 (490)
T PRK10642        194 PFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHH
Confidence            9998655433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.76  E-value=1.7e-06  Score=87.67  Aligned_cols=82  Identities=21%  Similarity=0.291  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc--hhhHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS--WGAADV  100 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g--~~~~F~  100 (462)
                      +.+.++++..+.++|.|+..+...++..|.+++++      +.++++++..+.++|..+++.+++.+.+..+  |++.|.
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~  172 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF  172 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence            46778888999999999999999999999987532      2578999999999999999999999887666  999998


Q ss_pred             HHHHHHHHHH
Q 012514          101 IITIVMAVSL  110 (462)
Q Consensus       101 i~~i~~~~~~  110 (462)
                      +.++..++.+
T Consensus       173 ~~~~~~~~~~  182 (405)
T TIGR00891       173 ISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHH
Confidence            8665554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.76  E-value=3.1e-06  Score=86.04  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.+++.|...+...++..|.+++++      +.+.++++..+.++|..+++.+++++.+..+|++.|.+.
T Consensus        90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~  163 (382)
T PRK10091         90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI  163 (382)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence            47888889999999999988888888888765422      246788888999999999999999998889999999998


Q ss_pred             HHHHHHHHH
Q 012514          103 TIVMAVSLL  111 (462)
Q Consensus       103 ~i~~~~~~i  111 (462)
                      ++..++..+
T Consensus       164 ~~~~~~~~~  172 (382)
T PRK10091        164 AVFNIAVLA  172 (382)
T ss_pred             HHHHHHHHH
Confidence            776655544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.73  E-value=9e-06  Score=89.21  Aligned_cols=86  Identities=15%  Similarity=0.243  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc----------
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH----------   92 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~----------   92 (462)
                      +.+.++++.++.++|.|+..|...+++.+.++++.      +...+++......+|.++++.++.++...          
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~  327 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA  327 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence            46788889999999999999999999999986422      25678888888899999888776555432          


Q ss_pred             ---cchhhHHHHHHHHHHHHHHHHH
Q 012514           93 ---VSWGAADVIITIVMAVSLLIFI  114 (462)
Q Consensus        93 ---~g~~~~F~i~~i~~~~~~iifl  114 (462)
                         .+|++.|++.++..+++++.++
T Consensus       328 ~~~~gWR~l~~i~~lp~ll~ll~~~  352 (742)
T TIGR01299       328 YQFHSWRVFVIVCAFPCVFAIGALT  352 (742)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHH
Confidence               3688888887776665554433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.72  E-value=3.5e-06  Score=87.05  Aligned_cols=308  Identities=15%  Similarity=0.118  Sum_probs=170.3

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh----hcc---chh
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ----EHV---SWG   96 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~----~~~---g~~   96 (462)
                      ...+++...+..++...+.-+..+++.|..++.+.  |   .+..++-.+..++|.++...+.+.+.    +..   +|.
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~--R---~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~  177 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE--R---TRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR  177 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhh--h---hhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence            34456666677999999999999999999865442  2   45677777777888765555555443    221   577


Q ss_pred             hHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchh
Q 012514           97 AADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEF  176 (462)
Q Consensus        97 ~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  176 (462)
                      +...+.++..+++.++.....|. ++++++.+              +                            +..++
T Consensus       178 ~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~--------------~----------------------------~~~~~  214 (428)
T PF13347_consen  178 WMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ--------------E----------------------------KKISL  214 (428)
T ss_pred             HHHHHHHHHHHHHhhhhhheeee-cccccccc--------------c----------------------------ccccc
Confidence            77776666666555554443332 00000000              0                            00000


Q ss_pred             hhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHH-hccCCCCCeeeCccc
Q 012514          177 LDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAAT-MNREIGNGFLIPPAS  255 (462)
Q Consensus       177 ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~~~~~g~g~~ip~~~  255 (462)
                      .+..     +.               -.++ |..   ..++....+.+....-..+....+..+ +..+ +    . .+.
T Consensus       215 ~~~~-----~~---------------~~~n-r~~---~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~----~-~~~  264 (428)
T PF13347_consen  215 RDSL-----RS---------------LFRN-RPF---RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G----L-ISI  264 (428)
T ss_pred             ccch-----hh---------------hccc-chH---HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h----h-hHH
Confidence            0000     00               0001 111   223333333344333333333333322 2211 1    1 123


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      +..+..+..++..|+..++.    +|.+       ..+-+.+|.++.+++++...+...                .+.++
T Consensus       265 ~~~~~~~~~~v~~~~~~~l~----~r~g-------k~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~  317 (428)
T PF13347_consen  265 FMLIFFVASIVGSPLWGRLS----KRFG-------KKKVYIIGLLLAALGFLLLFFLGP----------------GSPWL  317 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHcc-------ceeehhhhHHHHHHHHHHHHHHHh----------------hhHHH
Confidence            33344555566666665543    4432       233566888888888887766531                35677


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCC
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVP-------DSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDM  408 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~  408 (462)
                      ++...++.++|-....+...++..+..+       ++..|.++|++.+..-+|..+++.+.+.+-.....+++.   .+.
T Consensus       318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~---~~q  394 (428)
T PF13347_consen  318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANA---AVQ  394 (428)
T ss_pred             HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCc---CcC
Confidence            7888899999999999999999988887       456799999999999888888888776554333222100   012


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514          409 NSSRLDKFYWLLAALVAANLFVYVVVARRYS  439 (462)
Q Consensus       409 n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~  439 (462)
                      ++..+...-.+.+.+.++..++-+++.++|+
T Consensus       395 ~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~  425 (428)
T PF13347_consen  395 SASALSGIRILFSIVPAIFLLLAIIFMRFYP  425 (428)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            2222333444455555555555556666664

>PRK09669 putative symporter YagG; Provisional

Probab=98.71  E-value=6.7e-06  Score=85.38  Aligned_cols=60  Identities=13%  Similarity=0.106  Sum_probs=45.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYDQVP-------DSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      .+.++...++.++|+....+...+++.+.++       ++..|...|++.+...+|..+|+.+.+.+
T Consensus       319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556688999999999999999999886       44567888998877777777776666543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.70  E-value=9.8e-07  Score=88.33  Aligned_cols=86  Identities=20%  Similarity=0.161  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHhhhhhccchhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGV-TVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~-~~~~~l~~~~g~~~~F~i  101 (462)
                      +.+.++++..+.+++.|...|...++..|.+++++      +.+++++...+.++|..+++ ++.+.+.+..+|++.|.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV  155 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence            47788889999999999999999999999987532      25678899999999999999 677777788899999998


Q ss_pred             HHHHHHHHHHHHH
Q 012514          102 ITIVMAVSLLIFI  114 (462)
Q Consensus       102 ~~i~~~~~~iifl  114 (462)
                      .++..++..++.+
T Consensus       156 ~~~~~~~~~~~~~  168 (379)
T TIGR00881       156 PGIIAIIVSLICF  168 (379)
T ss_pred             HHHHHHHHHHHHh
Confidence            7766665544433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.70  E-value=1.5e-05  Score=82.49  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh--------ccch
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE--------HVSW   95 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~--------~~g~   95 (462)
                      ...+.+..++.++|.|+.-|...+++.|.+++++      +..+.++.+.+.+.|.++++.+.+.+..        .+||
T Consensus       124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  197 (432)
T PRK10406        124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW  197 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence            3468888999999999999999999999987643      2567888899999999998887666542        5799


Q ss_pred             hhHHHHHHHHHHHH
Q 012514           96 GAADVIITIVMAVS  109 (462)
Q Consensus        96 ~~~F~i~~i~~~~~  109 (462)
                      ++.|.+.++..++.
T Consensus       198 r~~F~i~~~~~ll~  211 (432)
T PRK10406        198 RIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999866654443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.70  E-value=8.9e-06  Score=82.49  Aligned_cols=82  Identities=10%  Similarity=0.091  Sum_probs=64.6

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +...++++.++.++|.|.. ++..+...+.++++      ++.++.+++..+.++|..+++.+++++.+++||+..|.+.
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            5778999999999999974 55555567777532      1368899999999999999999999999999999999885


Q ss_pred             HHHHHHHHH
Q 012514          103 TIVMAVSLL  111 (462)
Q Consensus       103 ~i~~~~~~i  111 (462)
                      ++.-++..+
T Consensus       151 ~~l~~~~~~  159 (368)
T TIGR00903       151 AAVAAAGII  159 (368)
T ss_pred             HHHHHHHHH
Confidence            554444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.70  E-value=3.5e-06  Score=88.14  Aligned_cols=84  Identities=12%  Similarity=-0.003  Sum_probs=66.1

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---chhhH
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV---SWGAA   98 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~---g~~~~   98 (462)
                      .+.+.+++...+.++|.|..-|...+.+.+.+++++      +..+++++-.+.++|..+++.+..++.+..   +|+..
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~  193 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM  193 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence            347788888889999999999999999999998653      257788899999999999999888776543   58888


Q ss_pred             HHHHHHHHHHHHH
Q 012514           99 DVIITIVMAVSLL  111 (462)
Q Consensus        99 F~i~~i~~~~~~i  111 (462)
                      |.+.++..++..+
T Consensus       194 f~~~g~~~~~~~i  206 (467)
T PRK09556        194 FIFPSIIALIIGF  206 (467)
T ss_pred             HHHHHHHHHHHHH
Confidence            8876655544333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.70  E-value=7.7e-07  Score=96.23  Aligned_cols=252  Identities=8%  Similarity=-0.061  Sum_probs=179.0

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-hhh----
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-WGA----   97 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-~~~----   97 (462)
                      +.....++++.++++.++.+++.+++.+++.+..++   +++++.+++|||..+.+.+.+ +++..+..... +..    
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiGS-lis~~i~~~l~~~~~~fg~  156 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAGS-LISTIITPILRGDVGCFGC  156 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccc
Confidence            355667788899999999999999999999987664   466689999999999999864 44544444333 332    


Q ss_pred             ---HHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514           98 ---ADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL  174 (462)
Q Consensus        98 ---~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  174 (462)
                         -++..++.+++.++.++.+...++..++.+.+...+.+++.......+                             
T Consensus       157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~-----------------------------  207 (654)
T TIGR00926       157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR-----------------------------  207 (654)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH-----------------------------
Confidence               233667777777788888877676666554443334444433322210                             


Q ss_pred             hhhhHhhhhcCCCCCCCCCCCcccc--cccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeC
Q 012514          175 EFLDKAAILEDYETPVDQQSPWRIA--NVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIP  252 (462)
Q Consensus       175 ~~ld~a~i~~~~~~~~~~~~~~~~~--~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip  252 (462)
                         .+... ....    ....|-.+  ...++++++...+++.++...+.+|+.+.|.....+.+...+++..+ .+...
T Consensus       208 ---~~~~~-~~~~----~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g~  278 (654)
T TIGR00926       208 ---KRFST-RSEH----WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGGF  278 (654)
T ss_pred             ---Hhhcc-CCcc----cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCCE
Confidence               00000 0000    00111111  22235678999999999999999999999999989889899998755 55555


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514          253 PASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGV  319 (462)
Q Consensus       253 ~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~  319 (462)
                      +...+.++++-.+++.++...+.+++.++..+   .-.+++++.-+.+.++++++..++.+......
T Consensus       279 ~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~---~~~~ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       279 EIQPDQMQVVNPLLILIFVPIFDYIVYPAIAK---CGTRFTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             ecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHh---cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66788999999999999999988999998743   32467889999999999999998888765544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.69  E-value=4.6e-06  Score=85.14  Aligned_cols=76  Identities=7%  Similarity=-0.036  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHH
Q 012514           28 FLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMA  107 (462)
Q Consensus        28 ~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~  107 (462)
                      .++.++.+++.+...|...++..|.-+    +    +...|++.....|+|..+|+.+++.+.+ .+|++.|.+.++..+
T Consensus       103 ~~~~~~~g~~~~~~~~~~~~~~~~~~~----~----~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~  173 (396)
T TIGR00882       103 IVGGLYLGFVFSAGAGAIEAYIEKVSR----N----SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFAL  173 (396)
T ss_pred             HHHHHHHHHHhccchhhHHHHHHHhhh----h----cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHH
Confidence            344556677778778888777655311    1    1246778889999999999999998865 699999998777666


Q ss_pred             HHHHH
Q 012514          108 VSLLI  112 (462)
Q Consensus       108 ~~~ii  112 (462)
                      +..++
T Consensus       174 ~~~~~  178 (396)
T TIGR00882       174 ILMLL  178 (396)
T ss_pred             HHHHH
Confidence            65543

>PRK03699 putative transporter; Provisional

Probab=98.69  E-value=1.6e-05  Score=81.12  Aligned_cols=84  Identities=11%  Similarity=0.178  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-hccchhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ-EHVSWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~-~~~g~~~~F~i  101 (462)
                      +.+.++++..+.+++.|...+...+.+.+.+++++      +....+..+...++|..++|.+.+++. +..||++.|.+
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~  167 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC  167 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            46778888889999999999999999999986532      245677778888999999999888764 45799999998


Q ss_pred             HHHHHHHHHHH
Q 012514          102 ITIVMAVSLLI  112 (462)
Q Consensus       102 ~~i~~~~~~ii  112 (462)
                      .++..++..+.
T Consensus       168 ~~~~~~~~~~~  178 (394)
T PRK03699        168 IGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHH
Confidence            76666555443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.68  E-value=9.3e-07  Score=92.57  Aligned_cols=87  Identities=11%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Q 012514           25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITI  104 (462)
Q Consensus        25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i  104 (462)
                      ......+.+++++.+.......++..|+.+ ++++   ......++.|.+.++|.++|+.++|++.+.++|+..|.+.++
T Consensus       121 ~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~  196 (468)
T TIGR00788       121 KVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAA  196 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence            334446788999999999999999999988 3322   224577899999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHH
Q 012514          105 VMAVSLLIFII  115 (462)
Q Consensus       105 ~~~~~~iifl~  115 (462)
                      ..++..+...+
T Consensus       197 l~ll~~~~~~~  207 (468)
T TIGR00788       197 LLLLQLFVSNL  207 (468)
T ss_pred             HHHHHHHHHHh
Confidence            77777444333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09952 shikimate transporter; Provisional

Probab=98.64  E-value=2.9e-05  Score=80.56  Aligned_cols=77  Identities=13%  Similarity=0.209  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccchhh
Q 012514           26 VFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSWGA   97 (462)
Q Consensus        26 ~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~~~   97 (462)
                      .+.+...+.++|.|+.-|...++..+.+++++      +....+....+.++|.+++..+..++.        +++||+.
T Consensus       127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~  200 (438)
T PRK09952        127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI  200 (438)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence            57778889999999999999999999887643      245677788888899888877766654        2579999


Q ss_pred             HHHHHHHHHHH
Q 012514           98 ADVIITIVMAV  108 (462)
Q Consensus        98 ~F~i~~i~~~~  108 (462)
                      .|.+.++..++
T Consensus       201 ~f~~~~~~~l~  211 (438)
T PRK09952        201 PFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHH
Confidence            99987665433

>PRK15075 citrate-proton symporter; Provisional

Probab=98.64  E-value=1.4e-05  Score=82.78  Aligned_cols=73  Identities=11%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccchhh
Q 012514           26 VFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSWGA   97 (462)
Q Consensus        26 ~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~~~   97 (462)
                      .++++.++.++|.|+.-|+..++..|.+++++      +.++.+++..+.|+|..+++.+++.+.        +++||++
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence            46788889999999999999999999997643      256778888888888777777766652        4689999


Q ss_pred             HHHHHHH
Q 012514           98 ADVIITI  104 (462)
Q Consensus        98 ~F~i~~i  104 (462)
                      .|.+.++
T Consensus       193 ~f~~~~~  199 (434)
T PRK15075        193 PFLIGCL  199 (434)
T ss_pred             HHHHHHH
Confidence            9987543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.63  E-value=1.7e-05  Score=83.84  Aligned_cols=82  Identities=13%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh------------
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE------------   91 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~------------   91 (462)
                      ...++++..+.++|.|+.-|....++.+.++++.      +.++.++.+...++|.++++.+..++..            
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  188 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE  188 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            5678999999999999999999999999987543      2678899999999999998888765431            


Q ss_pred             -----------ccchhhHHHHHHHHHHHHHH
Q 012514           92 -----------HVSWGAADVIITIVMAVSLL  111 (462)
Q Consensus        92 -----------~~g~~~~F~i~~i~~~~~~i  111 (462)
                                 +.+|++.|.+.++..++..+
T Consensus       189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       189 ASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             ccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence                       24799999877665555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.63  E-value=5.3e-05  Score=76.43  Aligned_cols=88  Identities=18%  Similarity=0.244  Sum_probs=75.8

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i  101 (462)
                      .+.+.+.++.++.++..|.|-+...+..+|..++++      +.++..+.+.+.-++-.+|.=++.++.+.+||+..|++
T Consensus        99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~  172 (394)
T COG2814          99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA  172 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence            348899999999999999999999999999998754      26889999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHH
Q 012514          102 ITIVMAVSLLIFII  115 (462)
Q Consensus       102 ~~i~~~~~~iifl~  115 (462)
                      -++.-+++++..+.
T Consensus       173 ia~l~ll~~~~~~~  186 (394)
T COG2814         173 IAVLALLALLLLWK  186 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666554443

>TIGR00897 2A0118 polyol permease family

Probab=98.62  E-value=4.7e-05  Score=77.96  Aligned_cols=76  Identities=12%  Similarity=0.039  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHhhhhhccchhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGL-LLGVTVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i  101 (462)
                      +...+++...+.++|.+..-+...+.+.+.+++++      +.++.+++..+.++|. .+++.+++++.+..||...++.
T Consensus       104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            35666777777888888877777777777765432      3678999999999996 6899999998888886655554


Q ss_pred             HHH
Q 012514          102 ITI  104 (462)
Q Consensus       102 ~~i  104 (462)
                      ...
T Consensus       178 ~~~  180 (402)
T TIGR00897       178 ALA  180 (402)
T ss_pred             HHH
Confidence            433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.62  E-value=7.7e-08  Score=96.96  Aligned_cols=92  Identities=21%  Similarity=0.183  Sum_probs=78.6

Q ss_pred             CCCcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-hh
Q 012514           18 EPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-WG   96 (462)
Q Consensus        18 ~~~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-~~   96 (462)
                      .....+.+.+.+...+.++|-+.+.|..+++++|.++++.      |++.|.||||++++|+.+|...+.++.+..+ |+
T Consensus       115 ~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr  188 (493)
T KOG1330|consen  115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR  188 (493)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence            3334568999999999999999999999999999998754      3689999999999999999999999987766 99


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 012514           97 AADVIITIVMAVSLLIFII  115 (462)
Q Consensus        97 ~~F~i~~i~~~~~~iifl~  115 (462)
                      ++|.+.++.+++..++..+
T Consensus       189 ~af~~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  189 WAFRGSAVLGVIVGLLVFL  207 (493)
T ss_pred             EEEEeehHHHHHHHHHHHh
Confidence            9999988888777664433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.61  E-value=8.7e-06  Score=85.48  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh---------cc
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE---------HV   93 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~---------~~   93 (462)
                      +...++++.++.++|.+..-+ ....+.+.++++.      +..+.++.+...|+|+.+++.+.+.+..         ..
T Consensus       123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~  195 (476)
T PLN00028        123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT  195 (476)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence            456677777888888887543 4456778776432      3578888888888888888777765532         25


Q ss_pred             chhhHHHHHHHHHHHHHHH
Q 012514           94 SWGAADVIITIVMAVSLLI  112 (462)
Q Consensus        94 g~~~~F~i~~i~~~~~~ii  112 (462)
                      ||++.|.+.++..++..+.
T Consensus       196 gWr~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        196 AWRIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            8999999877766655443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.61  E-value=5.5e-06  Score=86.27  Aligned_cols=304  Identities=14%  Similarity=0.232  Sum_probs=172.5

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-cchhhHHHHHH
Q 012514           25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH-VSWGAADVIIT  103 (462)
Q Consensus        25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i~~  103 (462)
                      +.+.+..++.|++.|...|++..+.++-.+.++      +.++.++.|-+..+|.+++..++|++-+. .||+..|.+.+
T Consensus       129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g  202 (466)
T KOG2532|consen  129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG  202 (466)
T ss_pred             hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence            356788899999999999999999999877533      26899999999999999999999999888 99999999877


Q ss_pred             HHHHHHHHHHHHcccceeecCCCCCCchh--HHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhh
Q 012514          104 IVMAVSLLIFIIGRPFYRYRVPKGSPLTP--MLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAA  181 (462)
Q Consensus       104 i~~~~~~iifl~~~~~~~~~~p~~~~~~~--~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~  181 (462)
                      +.-++-.+++...   +.+ .|++.|.-.  -.+-+.   +++...                      +.          
T Consensus       203 ~~g~i~~~~w~~~---~~d-~P~~h~~is~~El~~I~---~~k~~~----------------------~~----------  243 (466)
T KOG2532|consen  203 IVGLIWFILWFLF---YSD-SPSKHPNISEKELKYIE---KGKSEA----------------------HV----------  243 (466)
T ss_pred             HHHHHHHHHHHHH---hcC-CcccCCCCCHHHHHHHH---hccccc----------------------cc----------
Confidence            7666666554432   222 343322110  000000   000000                      00          


Q ss_pred             hhcCCCCCCCCCCCcccccccchHHHHHHHh---HHHHHHhhhh-hHhhh--cchhHHHHHHHHHhccCCCCCeeeC-cc
Q 012514          182 ILEDYETPVDQQSPWRIANVTKVEEMKLVLN---VIPVWLASLP-FGISV--AQSTTFFIKQAATMNREIGNGFLIP-PA  254 (462)
Q Consensus       182 i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~---~l~l~~~~i~-f~~~~--~Q~~s~~~~qa~~~~~~~g~g~~ip-~~  254 (462)
                          +   .....||+           ++++   +..+++.... .|..+  .|...      ..++. +. ++.+- .+
T Consensus       244 ----~---~~~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y~P------tY~~~-VL-~f~v~~~G  297 (466)
T KOG2532|consen  244 ----K---KKPPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTYLP------TYLKE-VL-GFDVRETG  297 (466)
T ss_pred             ----C---CCCCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHH-Hh-CCChhhhh
Confidence                0   00123443           1111   1222222211 11111  11111      23331 11 23232 34


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhh--HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIG--IGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS  332 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~--iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s  332 (462)
                      ++.++..+...+...+...+-+++.+| ...   .+..+|+.  ++....+++++.+++...       +         +
T Consensus       298 ~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~-------~---------~  357 (466)
T KOG2532|consen  298 FLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD-------E---------H  357 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC-------C---------c
Confidence            566666666666666666665555444 221   23455654  445555555555444311       0         1


Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhh--h-cCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCc
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYD--Q-VPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMN  409 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~--~-aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n  409 (462)
                      . |.  +.++++++..+..-...-+.-.  . || +.-+..||+......++.++++.+++.+-+           |+ +
T Consensus       358 ~-~~--a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-----------~~-t  421 (466)
T KOG2532|consen  358 R-LL--AVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-----------DN-T  421 (466)
T ss_pred             c-hH--HHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-----------CC-C
Confidence            1 22  3355566555555444443333  3 55 667899999999999999999998875431           11 1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhh
Q 012514          410 SSRLDKFYWLLAALVAANLFVYVVVA  435 (462)
Q Consensus       410 ~~~l~~~f~~la~l~~~~~v~~~~~~  435 (462)
                      ...=...|++.+++.++..++|.+.+
T Consensus       422 ~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  422 REEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhchheeEee
Confidence            11114578888888888888888875

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.59  E-value=1.6e-05  Score=83.36  Aligned_cols=113  Identities=11%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      +..++.+..++..|+..++.    +|.+       ..+.+.+|.++.+++.+.....-.     .        .+.+.++
T Consensus       271 ~~~~~~i~~ii~~~~~~~l~----~r~g-------kk~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~  326 (473)
T PRK10429        271 YLSYAGAANLVTLILFPRLV----KSLS-------RRILWAGASIFPVLSCGVLLLMGL-----A--------APHNALL  326 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHcC-------cHHHHHHHHHHHHHHHHHHHHHhc-----c--------CchhHHH
Confidence            34444555566666665433    3432       223344566655555544332210     0        0123444


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVP-------DSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++...++.++++....+...+++.+.+|       ++..|.+.|++.+..-+|..+|+.+.+.+
T Consensus       327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556678899999999999999999987       45567799999988877777776666544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.57  E-value=1.2e-05  Score=83.37  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh-hhhccchhhHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVY-VQEHVSWGAADVII  102 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~-l~~~~g~~~~F~i~  102 (462)
                      ...+++...+.+++.|...+.....+.|.+++++      +..++++++.+.++|..+++.+.+. +..+.+|+.+|.+.
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~  191 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP  191 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            5566777888899999999999999999887543      2578999999999999998877765 44457999999997


Q ss_pred             HHHHHHHHHH
Q 012514          103 TIVMAVSLLI  112 (462)
Q Consensus       103 ~i~~~~~~ii  112 (462)
                      ++..++..+.
T Consensus       192 ~~~~~i~~~~  201 (438)
T TIGR00712       192 AICAIIVALF  201 (438)
T ss_pred             HHHHHHHHHH
Confidence            7776665543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00896 CynX cyanate transporter

Probab=98.54  E-value=2.9e-05  Score=77.83  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc--chhhHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV--SWGAADV  100 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~--g~~~~F~  100 (462)
                      +.+.++++..+.++|.|...+...+...|.+++ +      +.++.+++..+.++|..+++.+++++.++.  +|+..|.
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~  158 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA  158 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            356777888899999999888888888877643 1      256889999999999999999999887664  3888887


Q ss_pred             HHHHHHHHH
Q 012514          101 IITIVMAVS  109 (462)
Q Consensus       101 i~~i~~~~~  109 (462)
                      +.++..++.
T Consensus       159 ~~~~~~~~~  167 (355)
T TIGR00896       159 WWALPALLA  167 (355)
T ss_pred             HHHHHHHHH
Confidence            755544443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.51  E-value=4e-05  Score=75.84  Aligned_cols=86  Identities=13%  Similarity=0.009  Sum_probs=66.8

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc---------
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH---------   92 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~---------   92 (462)
                      .+.+.+.+++.+++.|.+...+..++++++.-++++.      .+..|+.-....+|+++||++.+.+..+         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~------~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETA------ASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchH------HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            4588999999999999999999999999999765442      3568888899999999999999976532         


Q ss_pred             -------cchhhHHHHHHHHHHHHHHHH
Q 012514           93 -------VSWGAADVIITIVMAVSLLIF  113 (462)
Q Consensus        93 -------~g~~~~F~i~~i~~~~~~iif  113 (462)
                             ..|++.|.+-+...++..+++
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   368888885444433333333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.46  E-value=0.00012  Score=74.59  Aligned_cols=76  Identities=13%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             HHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Q 012514           34 ISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIF  113 (462)
Q Consensus        34 i~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~~~~iif  113 (462)
                      .++......+...++..+..++   +   +...+-....++..+|.++|+.+.+++.+++||+..|.+.++..++..+..
T Consensus       107 ~~~~~a~~d~~~d~~~~~~~~~---~---~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~  180 (390)
T TIGR02718       107 ASLASATQDIATDGMAAEHFNG---R---TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCV  180 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCH---h---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555454443221   1   123445566677789999999999999999999999999887777666554


Q ss_pred             HH
Q 012514          114 II  115 (462)
Q Consensus       114 l~  115 (462)
                      +.
T Consensus       181 ~~  182 (390)
T TIGR02718       181 LW  182 (390)
T ss_pred             HH
Confidence            33

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.38  E-value=0.00014  Score=74.83  Aligned_cols=85  Identities=12%  Similarity=0.133  Sum_probs=68.2

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh------ccchh
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE------HVSWG   96 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~------~~g~~   96 (462)
                      +...++++..+.++|.|..-|...++..+.+++++      +..+.+++..+.++|..+++.+++++.+      ..||+
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr  168 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ  168 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence            36778899999999999999999888998886422      2578889999999999999999998863      36999


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 012514           97 AADVIITIVMAVSLLIF  113 (462)
Q Consensus        97 ~~F~i~~i~~~~~~iif  113 (462)
                      +.|.+.++..++..++.
T Consensus       169 ~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       169 WLFLLEGFPSVILGVMT  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999766665544433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.35  E-value=6.9e-05  Score=75.28  Aligned_cols=90  Identities=20%  Similarity=0.248  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--hhhhhccchhhHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVV--VYVQEHVSWGAADV  100 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~--~~l~~~~g~~~~F~  100 (462)
                      +.+.+.+-..+.+.-.|.=-|...-.++.-|++++      |.+..++.-.+-|+|..+.+.++  +++..+++|+.+|.
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~  189 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY  189 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence            46667777777888888888999999999997644      36788899999999999999999  99999999999999


Q ss_pred             HHHHHHH-HHHHHHHHccc
Q 012514          101 IITIVMA-VSLLIFIIGRP  118 (462)
Q Consensus       101 i~~i~~~-~~~iifl~~~~  118 (462)
                      ++++..+ ++++.+..+|.
T Consensus       190 ~pgiiaiival~~~~~~rd  208 (448)
T COG2271         190 FPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            9876654 55555555433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.35  E-value=0.00058  Score=68.74  Aligned_cols=264  Identities=17%  Similarity=0.172  Sum_probs=145.5

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH-
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI-  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i-  101 (462)
                      ......++.+++++|.+.-.....++.+|.-+|++      |.+.-++-|...-+|..++.++.+.+-+.++..-..-+ 
T Consensus        88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~  161 (403)
T PF03209_consen   88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI  161 (403)
T ss_pred             HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence            34455666677888888889999999999976543      25788999999999999999999988777765333222 


Q ss_pred             ---HHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhh
Q 012514          102 ---ITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLD  178 (462)
Q Consensus       102 ---~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld  178 (462)
                         +.+.+.+.++-.+--.++..+..                      ..+                    +.+...+.+
T Consensus       162 ~~~a~i~~~l~~ia~wg~E~r~~~~~----------------------~~~--------------------~~~~~~f~~  199 (403)
T PF03209_consen  162 QGVALIALLLNLIALWGQEPRRSRRA----------------------AAA--------------------ERPRPPFRE  199 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCcccc----------------------cCC--------------------CCCCccHHH
Confidence               22222222222221111111000                      000                    000011111


Q ss_pred             HhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccch
Q 012514          179 KAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFG  258 (462)
Q Consensus       179 ~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~  258 (462)
                      ......        .+|          +.++++.  -+++..+           .+..|..-+...-|.-|-++++.-..
T Consensus       200 a~~~~~--------~~~----------~a~~f~~--fl~l~t~-----------a~~~QD~iLEPygg~Vfgmsv~eTT~  248 (403)
T PF03209_consen  200 AWRQVW--------ASP----------QARRFFV--FLFLGTL-----------AFFMQDVILEPYGGEVFGMSVGETTR  248 (403)
T ss_pred             HHHHHH--------hCC----------ChhHHHH--HHHHHHH-----------HHHhhHHHcCCchhHHcCCCHHHHHH
Confidence            110000        011          2222211  1111111           12223222222101012255554444


Q ss_pred             hhH---HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          259 LTA---VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       259 ~n~---l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      +|.   .-.++...+-.++..    |.      ..+.+.-.+|....++++....+...               .-+.+-
T Consensus       249 Lta~~~~G~L~G~~~~g~~l~----~~------~~~~~~a~~G~~~~~~~f~lii~a~~---------------~~~~~~  303 (403)
T PF03209_consen  249 LTAFWGGGTLLGMLLAGFLLS----RR------LGKKRTAALGCLLGALAFALIILAGP---------------LGSPWL  303 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----CC------CCchHHHHHHHHHHHHHHHHHHHHHh---------------cccchH
Confidence            444   334444444444332    21      12333334777777777765544321               123555


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      +.+..+++|+|--+.....++..-+.++++..|..||+|-..++++.-+|.++.+
T Consensus       304 ~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG  358 (403)
T PF03209_consen  304 FRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG  358 (403)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778899999999999999999999999999999999999988776666665554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.26  E-value=0.00012  Score=79.46  Aligned_cols=87  Identities=16%  Similarity=0.143  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---------
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV---------   93 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~---------   93 (462)
                      ....++++.++.++|.|...+...+++.|.+++++      +..++++++.+.++|..+|+++++++.+.+         
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~  244 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE  244 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence            35678899999999999999999999999987654      257899999999999999999999887543         


Q ss_pred             -------------chhhHHHHHHHHHHHHHHHHHH
Q 012514           94 -------------SWGAADVIITIVMAVSLLIFII  115 (462)
Q Consensus        94 -------------g~~~~F~i~~i~~~~~~iifl~  115 (462)
                                   +|+.+|.+.++..++..+.++.
T Consensus       245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         3888899877776665554444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11462 putative transporter; Provisional

Probab=98.19  E-value=0.0011  Score=69.23  Aligned_cols=83  Identities=12%  Similarity=0.171  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-------cchh
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH-------VSWG   96 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~-------~g~~   96 (462)
                      ...+++...+..++.-++.-...++.++.-++  ++||   .+..++.-.+.++|.++++++...+.+.       .+|.
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~eR---t~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITND--PTQR---ISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            33444455566788888888889999988755  4433   5788999999999988877775443332       2455


Q ss_pred             hHHHHHHHHHHHHHH
Q 012514           97 AADVIITIVMAVSLL  111 (462)
Q Consensus        97 ~~F~i~~i~~~~~~i  111 (462)
                      ....+.++..+++..
T Consensus       184 ~~~~i~~ii~~i~~~  198 (460)
T PRK11462        184 GGIAVLSVVAFMMLA  198 (460)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555544444444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.15  E-value=0.00068  Score=69.78  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=64.1

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh----------
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE----------   91 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~----------   91 (462)
                      .+.+.+.++..+.++|.|...+..++++.+..+++++      .+..++.....++|..+|+.+++.+..          
T Consensus        92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~  165 (410)
T TIGR00885        92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTA------TRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV  165 (410)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence            3477888899999999999999999999887654321      345788889999999999999887732          


Q ss_pred             ----------------ccchhhHHHHHHHHHHHHHH
Q 012514           92 ----------------HVSWGAADVIITIVMAVSLL  111 (462)
Q Consensus        92 ----------------~~g~~~~F~i~~i~~~~~~i  111 (462)
                                      ..+|++.|.+.++..++..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~  201 (410)
T TIGR00885       166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL  201 (410)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            24699999876665444433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.14  E-value=0.00037  Score=70.99  Aligned_cols=98  Identities=8%  Similarity=0.062  Sum_probs=66.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHH-HHHHhHHHHHHHHHHhhcccccccCCCccccCCCc
Q 012514          331 MSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFY-LSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMN  409 (462)
Q Consensus       331 ~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~-~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n  409 (462)
                      .+++++++.=.+.++---+.-....-++++..|+++.+....+. .++.++|..+.+.+.+.            +.|+++
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~------------lyd~~G  377 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY------------LYDRIG  377 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH------------HHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh------------hHhhcC
Confidence            35667776668888888899999999999999999998888775 47778888877766653            333332


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 012514          410 SSRLDKFYWLLAALVAANLFVYVVVARRYSYKNV  443 (462)
Q Consensus       410 ~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~  443 (462)
                         ....|+.++.++++.+++-++.-++=++..+
T Consensus       378 ---~~~tylimg~iv~~~~li~~f~l~~~~~~~~  408 (412)
T PF01306_consen  378 ---FQHTYLIMGLIVLPFTLISAFTLKKDKKQIV  408 (412)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHS--SSSTTC
T ss_pred             ---cHHHHHHHHHHHHHHHHHheeeecCCCcccc
Confidence               1234777888777766666665554444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10133 L-fucose transporter; Provisional

Probab=98.13  E-value=0.001  Score=69.01  Aligned_cols=63  Identities=13%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ   90 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~   90 (462)
                      .+...+++++++.++|.|...+..++++.|..+++.    +  ....+++.....+|..+|+.+++.+.
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~----~--~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----G--HFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh----H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447888999999999999999999999998643221    1  23467778888899999988876543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.09  E-value=9.7e-06  Score=82.08  Aligned_cols=143  Identities=15%  Similarity=0.150  Sum_probs=105.1

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      .+|..-.+.-+++.|+.+.+-    .|+       ++.+-|++|.++-.++.+..++..                   -+
T Consensus        72 ll~~vf~v~~~i~sPl~gyLa----dry-------NR~~v~~vG~~iW~~Av~~~~fs~-------------------~F  121 (493)
T KOG1330|consen   72 LLQTVFIVVFMIASPLFGYLA----DRY-------NRKRVIAVGIFIWTLAVFASGFSN-------------------HF  121 (493)
T ss_pred             chhHHHHHHHHHHHHHHHHHH----hhc-------CcceEEeeHHHHHHHHHHHHHHHH-------------------HH
Confidence            455555556667788888743    332       466778899999998888777653                   34


Q ss_pred             hHH-HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514          335 WLA-PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL  413 (462)
Q Consensus       335 wli-~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l  413 (462)
                      ||+ ..-.+.|+||...+|...+++.+..|+..||+++|+++++.-+|+.+|.+..+.+...+.    .|          
T Consensus       122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~----~W----------  187 (493)
T KOG1330|consen  122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF----WW----------  187 (493)
T ss_pred             HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc----ce----------
Confidence            655 456899999999999999999999999999999999999999999998766665543221    12          


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514          414 DKFYWLLAALVAANLFVYVVVARRYSYK  441 (462)
Q Consensus       414 ~~~f~~la~l~~~~~v~~~~~~~~~~~~  441 (462)
                      .+=|+.-++++++.+++.+++.+.=+|+
T Consensus       188 r~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  188 RWAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             EEEEEeehHHHHHHHHHHHhhccCcccc
Confidence            1125667788888777666666555543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.09  E-value=0.0013  Score=67.44  Aligned_cols=86  Identities=13%  Similarity=0.281  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHH-HHhHHHHHHHHHHhhcccccccCCCccccCCCccch---hHH
Q 012514          340 SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLS-VIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSR---LDK  415 (462)
Q Consensus       340 ~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l-~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~---l~~  415 (462)
                      -.++|+.-.+..+++..++.+.+|++.|+.+||++.. ..++|..+|+.+.+.+            .|+.+...   ...
T Consensus       308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l------------~~~~g~~~~~~~~~  375 (400)
T PF03825_consen  308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL------------YDAFGARGMFDWSA  375 (400)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH------------HHHhcchhhhhHHH
Confidence            3579999999999999999999999999999999875 5688888887776633            32222211   224


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhc
Q 012514          416 FYWLLAALVAANLFVYVVVARR  437 (462)
Q Consensus       416 ~f~~la~l~~~~~v~~~~~~~~  437 (462)
                      +|.+.++++++..+++++..|+
T Consensus       376 ~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  376 VFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhhccC
Confidence            5666777777777777777543

>PRK03545 putative arabinose transporter; Provisional

Probab=98.03  E-value=0.00014  Score=74.04  Aligned_cols=109  Identities=13%  Similarity=-0.003  Sum_probs=80.6

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..+...+...+..++...+.    +|+       +..+-+.++.++.+++.+..++.                  .+.+
T Consensus        48 ~~~~~~~~~~~~~~~~~g~l~----dr~-------g~r~~~~~~~~~~~~~~~~~~~~------------------~~~~   98 (390)
T PRK03545         48 LMLTIYAWVVALMSLPLMLLT----SNV-------ERRKLLIGLFVLFIASHVLSALA------------------WNFT   98 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----cCC-------ChHHHHHHHHHHHHHHHHHHHHh------------------ccHH
Confidence            344455555556666665543    333       23445667888888887766543                  2455


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++...++.++++....|....++.+..|++.|+.++|++....++|..+++.+...+
T Consensus        99 ~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l  156 (390)
T PRK03545         99 VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI  156 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            6666778999999999999999999999999999999999999999999988776643

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.98  E-value=0.00027  Score=72.70  Aligned_cols=109  Identities=17%  Similarity=0.076  Sum_probs=82.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..+...+...+..++..++.++..+|           +-+.+++++.+++.+..++.                  .+.+
T Consensus        47 ~~~s~~~~~~~~~~~~~g~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~~   97 (412)
T TIGR02332        47 LAATLFYAAYVICGIPSNIMLAIIGAR-----------RWIAGIMVLWGIASTATMFA------------------TGPE   97 (412)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHh------------------cCHH
Confidence            344555555666667766655433322           23567787888777776643                  2355


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++...++.|++|....|.....+.+..|++.||..+|++....++|..+++.+...+
T Consensus        98 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332        98 SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777889999999999999999999999999999999999999999999998876643

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=4.6e-05  Score=75.87  Aligned_cols=146  Identities=13%  Similarity=0.139  Sum_probs=115.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.+.-.+.-++..|+++.+..++.           ...-|.+|++++..+.++.++.+.                  +
T Consensus       109 G~LFaskA~~qllvnp~~G~l~~~iG-----------y~ipm~~Gl~vmf~sTilFafg~s------------------y  159 (464)
T KOG3764|consen  109 GLLFASKALVQLLVNPFFGNLIDRIG-----------YKIPMVAGLFVMFLSTILFAFGNS------------------Y  159 (464)
T ss_pred             hHHHHHHHHHHHHhcccchhhHHHhc-----------cccHHHHHHHHHHHHHHHHHHcch------------------h
Confidence            45666667777777788877665333           333588999999999999888643                  3


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh-hhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccch
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSM-RSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSR  412 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~-~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~  412 (462)
                      +.++.+-.++|+|..+.+..|++++.+.-|++. ||..||+-.-..++|..+|+.+.+.++..-.+    ..|       
T Consensus       160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk----~aP-------  228 (464)
T KOG3764|consen  160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK----SAP-------  228 (464)
T ss_pred             HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC----cCc-------
Confidence            456678899999999999999999999999996 69999999999999999999888766543221    111       


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 012514          413 LDKFYWLLAALVAANLFVYVVVARRYSYKNV  443 (462)
Q Consensus       413 l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~  443 (462)
                          |.+++.++++...+-+++.+.++..++
T Consensus       229 ----FlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  229 ----FLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             ----HHHHHHHHHHHHHHHHheeCccccCcc
Confidence                899999999999999998888777654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.94  E-value=0.00033  Score=70.16  Aligned_cols=78  Identities=17%  Similarity=0.119  Sum_probs=56.5

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh----------c
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE----------H   92 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~----------~   92 (462)
                      +.+.++++.++.+++.+.+ +...++++|.+++++      +..+.+++....|+|..+++.+.+.+..          +
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            4677888888999997766 456788888876432      2567888888889999888888776654          2


Q ss_pred             cchhhHH-HHHHHHHH
Q 012514           93 VSWGAAD-VIITIVMA  107 (462)
Q Consensus        93 ~g~~~~F-~i~~i~~~  107 (462)
                      .+|++.| .+.++..+
T Consensus       163 ~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       163 LAWGWAFVIVPAGILL  178 (366)
T ss_pred             ccccchhHHHHHHHHH
Confidence            4899998 44343333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.93  E-value=0.00032  Score=69.48  Aligned_cols=133  Identities=15%  Similarity=0.162  Sum_probs=96.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.+...+...+..|+...+.++..+|           +-+.+|.++.+++.+...+.                  .+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~------------------~~~   85 (352)
T PF07690_consen   35 GLLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA------------------SNF   85 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH------------------CCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh------------------hhH
Confidence            3566666777778888888766543332           34667888888885544432                  123


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL  413 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l  413 (462)
                      ++++...++.++++....+.....+.+..|++.|+..+|++....++|..+++.+.+.+..            ..+   .
T Consensus        86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~------------~~~---~  150 (352)
T PF07690_consen   86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS------------YFG---W  150 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HCH---H
T ss_pred             HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh------------ccc---c
Confidence            4667788999999999999999999999999999999999999999999999888774431            111   1


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012514          414 DKFYWLLAALVAANLFV  430 (462)
Q Consensus       414 ~~~f~~la~l~~~~~v~  430 (462)
                      ...|+..+++.++..++
T Consensus       151 ~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  151 RWAFLISAILSLIAAIL  167 (352)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhh
Confidence            22366677777666553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.91  E-value=0.00035  Score=70.32  Aligned_cols=110  Identities=14%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+.+.+..++..|+..++.+    |++       ..+-+.+|.++.+++.+..+..                  .+.
T Consensus        43 g~~~~~~~~~~~~~~~~~g~l~d----~~g-------~r~~~~~~~~~~~~~~~~~~~~------------------~~~   93 (385)
T TIGR00710        43 QMTLTLYLLGFAAGQLLWGPLSD----RYG-------RRPVLLLGLFIFALSSLGLALS------------------NNI   93 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH----hcC-------ChHHHHHHHHHHHHHHHHHHHH------------------ccH
Confidence            34556666666777777766543    321       2234557777777777765542                  234


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+.+.+
T Consensus        94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  152 (385)
T TIGR00710        94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI  152 (385)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666788999999999999999999999999999999999999999988888776643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.004  Score=64.32  Aligned_cols=64  Identities=17%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ   90 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~   90 (462)
                      .+....++-..+..++.-.+.-...++.+..-++  ++||   .+..+|..+..|+|.++...+.+.+.
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~ER---~~l~s~R~~~~~~g~~l~~~~~~plv  173 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQER---ASLTSWRMVFASLGGLLVAVLFPPLV  173 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666678888888888889999988754  5544   57889999999999887777766554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.87  E-value=0.00058  Score=70.82  Aligned_cols=89  Identities=9%  Similarity=0.091  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.....+.+.+..+|.....-...++..+.-++++.+    ....-++.|.+..+|++++..+.|++.++.+++..|.++
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~  160 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS  160 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence            3455566777788999998889999998887655432    256678999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHH
Q 012514          103 TIVMAVSLLIFII  115 (462)
Q Consensus       103 ~i~~~~~~iifl~  115 (462)
                      ++.-.+.++..+.
T Consensus       161 ~~~~~l~~~~~~~  173 (433)
T PF03092_consen  161 AALPLLMLIVALF  173 (433)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776666554333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.87  E-value=0.00025  Score=70.99  Aligned_cols=109  Identities=15%  Similarity=0.113  Sum_probs=83.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+...+..++..|+..++.++..+|           +-+.++.++.+++.+..++.                  .+.
T Consensus        32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~   82 (399)
T TIGR00893        32 GYVFSAFSWGYVVGQFPGGWLLDRFGAR-----------KTLAVFIVIWGVFTGLQAFA------------------GAY   82 (399)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcCcc-----------eeeHHHHHHHHHHHHHHHHH------------------cCH
Confidence            4566777777778888877765433222           23456777777666665542                  245


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++++...++.++|.....+.....+.+..|++.|+..+|++.....+|..+++.+...
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  140 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW  140 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            5666778999999999999999999999999999999999999999999999887764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.86  E-value=0.00057  Score=71.37  Aligned_cols=110  Identities=13%  Similarity=0.032  Sum_probs=84.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+...+..++..|+..++.++..+|           +-+.+|.++.+++.+..+..                  .+.
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~   90 (485)
T TIGR00711        40 QWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA------------------PNL   90 (485)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc------------------CCH
Confidence            4666777777788888887765443322           23557777777776655432                  245


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++++...++.++|.....|.....+.+..|++.|+.++|++.....+|..+|+.+.+.+
T Consensus        91 ~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  149 (485)
T TIGR00711        91 ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI  149 (485)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence            56677889999999999999999999999999999999999999999999988776643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.86  E-value=0.0015  Score=69.02  Aligned_cols=110  Identities=8%  Similarity=0.067  Sum_probs=83.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      .|..+...+...+..|+.+++.++..+|           +-+.+|.++.+++.+..+..                  -+.
T Consensus        44 ~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a------------------~~~   94 (495)
T PRK14995         44 LWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS------------------PTA   94 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc------------------CCH
Confidence            4566666777777888887766544333           34667888888877776642                  245


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhh-cCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQ-VPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~-aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+.+.+
T Consensus        95 ~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l  154 (495)
T PRK14995         95 SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL  154 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6667778999999999999888877666 5789999999999999999999998887744

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.84  E-value=0.0012  Score=67.20  Aligned_cols=108  Identities=13%  Similarity=0.077  Sum_probs=79.7

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.+...+..++..++..++.++..           +.+-+.++.++.+++.+...+.                  .+.
T Consensus        53 g~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~------------------~~~  103 (406)
T PRK11551         53 GWAFSAGILGLLPGALLGGRLADRIG-----------RKRILIVSVALFGLFSLATAQA------------------WDF  103 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-----------CchhHHHHHHHHHHHHHHHHHh------------------ccH
Confidence            34556666667777777776554332           2233556666666665544432                  245


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      ++++...++.+++.....|...+.+.+..|++.|+..+|++.....+|..+++.+..
T Consensus       104 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  160 (406)
T PRK11551        104 PSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV  160 (406)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677899999999999999999999999999999999999999999999877654

>PRK10054 putative transporter; Provisional

Probab=97.81  E-value=0.00076  Score=68.98  Aligned_cols=110  Identities=8%  Similarity=0.030  Sum_probs=78.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..++..+..++..|+..++.++..+           .+-+.+|.++.+++++..++.+                  +.
T Consensus        46 g~~~s~~~~~~~~~~~~~G~l~Dr~g~-----------k~~~~~~~~~~~~~~~~~~~~~------------------~~   96 (395)
T PRK10054         46 GYAMTIALTIGVVFSLGFGILADKFDK-----------KRYMLLAITAFASGFIAIPLVN------------------NV   96 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhHHHHHHHHHHHHHHHHHHh------------------HH
Confidence            345566666677777888776543322           2245577777777777665532                  22


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +..+....+.+.+.....|.....+.+..|++.|+..+|+......+|..+|+.+.+.+
T Consensus        97 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l  155 (395)
T PRK10054         97 TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL  155 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333456777777777888899999999999999999999999999999888877754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.80  E-value=0.00092  Score=68.34  Aligned_cols=109  Identities=11%  Similarity=0.041  Sum_probs=83.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..+.+.+...+..|+...+.+    |.       .+.+-+.++.++.+++.+...+.                  .+.+
T Consensus        59 ~~~~~~~~~~~~~~~~~g~l~D----r~-------grr~~~~~~~~~~~~~~~~~~~~------------------~~~~  109 (394)
T PRK10213         59 QSVTVTAFVAMFASLFITQTIQ----AT-------DRRYVVILFAVLLTLSCLLVSFA------------------NSFS  109 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc----cc-------CcHHHHHHHHHHHHHHHHHHHHH------------------ChHH
Confidence            3445667777777777776543    32       23345667888888777665442                  2456


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++...++.+++.....|.....+.+..|++.|+..+|+.....++|..+++.+...+
T Consensus       110 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l  167 (394)
T PRK10213        110 LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFL  167 (394)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666778999999999999999999999999999999999999999999988887644

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.77  E-value=0.0011  Score=68.77  Aligned_cols=109  Identities=11%  Similarity=0.076  Sum_probs=79.3

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      ++.+...+...+..|+..++.+    |.+       +.+-+.+++++.+++.+..+...                  +.+
T Consensus        62 ~~~~~~~~~~~~~~~~~G~l~d----r~g-------~r~~~~~~~~~~~~~~~~~~~~~------------------~~~  112 (434)
T PRK11663         62 LLATLFYITYGVSKFVSGIVSD----RSN-------ARYFMGIGLIATGIINILFGFSS------------------SLW  112 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHh----hcC-------CchhHHHHHHHHHHHHHHHHHHh------------------HHH
Confidence            3445555666677777766553    332       22345678888777776655432                  234


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      .++...++.++++....+.....+.+..|++.||..+|++....++|..+++.+.+.+
T Consensus       113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  170 (434)
T PRK11663        113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI  170 (434)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445667889999999999999999999999999999999999999999998776643

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.76  E-value=0.067  Score=56.20  Aligned_cols=55  Identities=15%  Similarity=0.229  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 012514          341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHV  395 (462)
Q Consensus       341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~  395 (462)
                      ++.|+.-.-..+..=++..++.|++..+.+.|+|.++.-....+|+++.+.+...
T Consensus       388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~  442 (477)
T PF11700_consen  388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA  442 (477)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777778888899999999999999999999999999999999999877644

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.73  E-value=0.0012  Score=65.68  Aligned_cols=115  Identities=10%  Similarity=0.010  Sum_probs=84.7

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..++..+..++..|+..++.++..+|           +-+.++.++.+++.+...+....             ...+.
T Consensus        37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~   92 (365)
T TIGR00900        37 SLAALAGMLPYVVLSPIAGALADRYDRK-----------KVMIGADLIRAVLVAVLPFVALL-------------GGLNI   92 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhchh-----------HHHHHHHHHHHHHHHHHHHHHHc-------------CCCcH
Confidence            3456666777778888887766543322           23456666666666555544321             01356


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++....++.++++.+..|...+++.+..|++.|+..+|+......+|..+|+.+...+
T Consensus        93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l  151 (365)
T TIGR00900        93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM  151 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            66677889999999999999999999999999999999999999999999988876643

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.0014  Score=66.22  Aligned_cols=139  Identities=17%  Similarity=0.184  Sum_probs=105.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.+...+.+.+..|++..+-.++-||           +-+...+.+..+|-+..++.                  .|.
T Consensus        51 G~lis~yAl~~ai~ap~l~~lt~r~~Rr-----------~lLl~~l~lFi~~n~l~alA------------------p~f  101 (394)
T COG2814          51 GQLITAYALGVALGAPLLALLTGRLERR-----------RLLLGLLALFIVSNLLSALA------------------PSF  101 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchH-----------HHHHHHHHHHHHHHHHHHHh------------------ccH
Confidence            5788999999999999998765433222           12333445555565555542                  356


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL  413 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l  413 (462)
                      +.++..-++.+++--...+.....+.+++|++.|+.++|+-+....++..+|.-+.+++...-     +|          
T Consensus       102 ~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-----GW----------  166 (394)
T COG2814         102 AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-----GW----------  166 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-----hH----------
Confidence            677888899999999999999999999999999999999999999999998877776554221     23          


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 012514          414 DKFYWLLAALVAANLFVYVVVAR  436 (462)
Q Consensus       414 ~~~f~~la~l~~~~~v~~~~~~~  436 (462)
                      ..-|+..++++++..+..+...+
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Confidence            33478888888888888777777

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.70  E-value=0.0011  Score=67.28  Aligned_cols=109  Identities=16%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+.+.+..++..|+..++.+    |+       +..+-+.+|.++.+++.+..++.                  .+.
T Consensus        41 g~~~s~~~~~~~~~~~~~g~l~d----r~-------g~r~~~~~~~~~~~~~~~l~~~~------------------~~~   91 (382)
T PRK10091         41 GHMISYYALGVVVGAPIIALFSS----RY-------SLKHILLFLVALCVIGNAMFTLS------------------SSY   91 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc----cC-------ccHHHHHHHHHHHHHHHHHHHHh------------------CcH
Confidence            45667777888888888877553    32       23334667778878777766543                  245


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      +++....++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.+.+.
T Consensus        92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  149 (382)
T PRK10091         92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY  149 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence            6667778999999999999999999999999999999999998888888888776553

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.68  E-value=0.0019  Score=54.28  Aligned_cols=106  Identities=18%  Similarity=0.178  Sum_probs=75.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514          258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA  337 (462)
Q Consensus       258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli  337 (462)
                      ....+..++..|+..++.++..           ..+-+.++..+.+++.+.....                  .+.++..
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g-----------~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~   55 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFG-----------RKPVLLVGLFIFVLSTAMFALS------------------SNITVLI   55 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcc-----------hhHHHHHHHHHHHHHHHHHHHh------------------ccHHHHH
Confidence            3445566667777766543221           2223455666666665544432                  1344555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          338 PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       338 ~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.+.+
T Consensus        56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  110 (141)
T TIGR00880        56 IARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL  110 (141)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHH
Confidence            5678999999999999999999999999999999999999999999998776643

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.68  E-value=0.0024  Score=64.56  Aligned_cols=110  Identities=11%  Similarity=0.120  Sum_probs=84.1

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..++..+...+..|+...+.++..+|           +-+.++.++.+++.+..++.                  .+.
T Consensus        50 g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~  100 (405)
T TIGR00891        50 ASLISAALISRWFGALMFGLWGDRYGRR-----------LPMVTSIVLFSAGTLACGFA------------------PGY  100 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh------------------ccH
Confidence            4566677777788888888766544333           23556777777666655442                  234


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++....++.|+|+....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus       101 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l  159 (405)
T TIGR00891       101 ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLV  159 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666789999999999999999999999999999999999999999999998876644

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.0018  Score=64.83  Aligned_cols=89  Identities=19%  Similarity=0.182  Sum_probs=78.9

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i  101 (462)
                      .+.+.++++..+.++|.++...+-.++++|.|+++..     |+++..+---.+.+|.++||-.+|.+.+..|+.+-|++
T Consensus       157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV  231 (464)
T KOG3764|consen  157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV  231 (464)
T ss_pred             chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence            3478999999999999999999999999999998653     26788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 012514          102 ITIVMAVSLLIFII  115 (462)
Q Consensus       102 ~~i~~~~~~iifl~  115 (462)
                      .++.+++..++-++
T Consensus       232 L~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  232 LAIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHHHHHHHHHh
Confidence            98888887765444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.65  E-value=0.018  Score=61.61  Aligned_cols=318  Identities=11%  Similarity=0.069  Sum_probs=150.0

Q ss_pred             CCCCCcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 012514           16 CLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSW   95 (462)
Q Consensus        16 c~~~~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~   95 (462)
                      |..+++  ...+..|..+.++|.|... .....++|..+.+.    |  ..++.+..+..-+...+|+.++..+..+.+|
T Consensus       125 ~atA~~--~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~----R--~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W  195 (599)
T PF06609_consen  125 CATAQN--MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW----R--GLGLAIASIPFIITTWISPLIAQLFAAHSGW  195 (599)
T ss_pred             hhcCCc--HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch----h--hhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence            444444  6779999999999988775 45566888876432    1  2233333333323333455555555556799


Q ss_pred             hhHHHHHHHHHHHHHHHHH-Hcccc-eeecCCCCCCchhH------HHHH---------HHHHHhCCC-CCC-CCCCccc
Q 012514           96 GAADVIITIVMAVSLLIFI-IGRPF-YRYRVPKGSPLTPM------LQVL---------VAAIAKRNL-PHP-SDPDQLF  156 (462)
Q Consensus        96 ~~~F~i~~i~~~~~~iifl-~~~~~-~~~~~p~~~~~~~~------~~vl---------~~a~~~~~~-~~~-~~~~~l~  156 (462)
                      +|.|++.++...++++... +.++. .+..+.++...+..      ...+         ...+.-... .+| +++..+-
T Consensus       196 Rw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa  275 (599)
T PF06609_consen  196 RWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIA  275 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchh
Confidence            9999999888888776433 32221 11111112111111      1111         111111111 111 1111000


Q ss_pred             cccccccccccccccccchhhhHhhhhcCCCCC-CCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHH
Q 012514          157 EYPKVVAKGRLLCHTKNLEFLDKAAILEDYETP-VDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFI  235 (462)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~~~ld~a~i~~~~~~~-~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~  235 (462)
                      ..   ..|.         ..+ .+...-+.+.. ..+..|+++++     ++|.+.   ..++...++.+.|......|.
T Consensus       276 ~l---viG~---------~~L-v~F~~wE~~~~~~~Pl~P~~Lf~-----~~r~~~---~~lvi~fi~G~~~~s~~~l~p  334 (599)
T PF06609_consen  276 PL---VIGF---------VLL-VAFVVWEWFGAPKDPLFPHRLFK-----DRRGFA---ALLVISFISGMNFFSVNILWP  334 (599)
T ss_pred             hH---HHHH---------HHH-HHHHHhhhhccCCCCcCCHHHhc-----cchHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            00   0000         000 01111110000 01234555543     222221   111222233333444555666


Q ss_pred             HHHHHhccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 012514          236 KQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKK  315 (462)
Q Consensus       236 ~qa~~~~~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~  315 (462)
                      +|..++..+-..++. ...+......+.+.+...++..+..+. +|         ....+.+|.++..+.+..++...  
T Consensus       335 ~~~~~vf~~d~~~~~-~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~---------~Kw~li~~~~~~ta~~Gama~~~--  401 (599)
T PF06609_consen  335 QQVVNVFGSDPISIT-EIGWISSPVGFGSCAGAVILGLLFSKI-RH---------IKWQLIFGSVLMTAFCGAMAAVR--  401 (599)
T ss_pred             HHHhhhccCCCcccc-eeehhhhhHHHHHHHHHHHHHHHHHHc-cc---------hhHHHHHHHHHHHHHHHHHHHcc--
Confidence            666554322110111 123444455555555555544433211 11         12234566666555444443321  


Q ss_pred             hhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          316 RLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       316 ~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                           .+       ..+.+|..  -++.++|-..+.......+.-..|++.-|..+|+......+|+.+|..+..
T Consensus       402 -----~~-------n~~~~i~~--~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  402 -----PD-------NKNAAIAF--LVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             -----CC-------CcchHHHH--HHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                 11       12233322  245566666666666667777899999999999999999999988876653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.64  E-value=0.0027  Score=64.99  Aligned_cols=103  Identities=15%  Similarity=0.023  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHH
Q 012514          261 AVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQS  340 (462)
Q Consensus       261 ~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~  340 (462)
                      .+..++..|+.+++.++..           ..+-+.+|.++.+++++.....                  -+.|+++...
T Consensus        56 ~l~~~~~~~~~G~l~dr~g-----------~k~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~  106 (400)
T PRK11646         56 QFIQQGLGIFGGAIADRFG-----------AKPMIVTGMLMRAAGFATMAIA------------------HEPWLLWLSC  106 (400)
T ss_pred             HHHHHHHHhhhhHHHHHhC-----------chHHHHHHHHHHHHHHHHHHHh------------------ccHHHHHHHH
Confidence            4444555566666544322           2223567888888877766542                  2456677778


Q ss_pred             HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++.++++.+..|...+.+.+.+|++.|+..+|+......+|..+|+.+.+.+
T Consensus       107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l  158 (400)
T PRK11646        107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWL  158 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999988877644

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.63  E-value=0.036  Score=55.09  Aligned_cols=85  Identities=20%  Similarity=0.291  Sum_probs=69.4

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV-SWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i  101 (462)
                      +.+.++.|.+++++|.+....-..+++-+-|+++-       ....+.|-.+.++|+.+++.++..+.++. ||+.+...
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~  170 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF  170 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence            46788999999999999999999999888876543       56788999999999999999999998876 79888776


Q ss_pred             HHHHHHHHHHHHH
Q 012514          102 ITIVMAVSLLIFI  114 (462)
Q Consensus       102 ~~i~~~~~~iifl  114 (462)
                      =+..-++++++.+
T Consensus       171 WAl~allAl~~Wl  183 (395)
T COG2807         171 WALLALLALLIWL  183 (395)
T ss_pred             HHHHHHHHHHHHh
Confidence            5565566665544

>TIGR00895 2A0115 benzoate transport

Probab=97.61  E-value=0.00071  Score=68.10  Aligned_cols=109  Identities=16%  Similarity=0.233  Sum_probs=79.6

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      ++.++..+..++..++..++.++..+|           +-+.+|.++.+++.+...+.                  .+.+
T Consensus        56 ~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~------------------~~~~  106 (398)
T TIGR00895        56 FLFSAGLIGMAFGALFFGPLADRIGRK-----------RVLLWSILLFSVFTLLCALA------------------TNVT  106 (398)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHc------------------cchH
Confidence            344555566666667776655443322           23556666666666655432                  2345


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++...++.+++.....+.....+.+..|++.|+..+|+......+|..+++.+.+.+
T Consensus       107 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  164 (398)
T TIGR00895       107 QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL  164 (398)
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence            5666778999999999999999999999999999999999999999999998776543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.60  E-value=0.0027  Score=65.38  Aligned_cols=113  Identities=12%  Similarity=0.039  Sum_probs=85.2

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.+...+..++..|+..++..+..           ..+-+.+|+++.+++.+.......               ..+.
T Consensus        41 g~l~s~~~~g~~i~~~~~g~l~~r~G-----------~r~~~~~g~~l~~~g~~l~~~~~~---------------~~~~   94 (410)
T TIGR00885        41 ALVQSAFYGGYFIMAIPAAIFMKKLS-----------YKAGILLGLFLYALGAFLFWPAAE---------------IMNY   94 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-----------chHHHHHHHHHHHHHHHHHHHHHh---------------hccH
Confidence            45667777778888888777654332           233566888888888766443211               1245


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++++...++.++|..+..+....++.+.+|++.++..+++.....++|..+|+.+...+
T Consensus        95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666778999999999999999999999999999999999999999999988877654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03699 putative transporter; Provisional

Probab=97.60  E-value=0.0059  Score=62.23  Aligned_cols=108  Identities=13%  Similarity=0.168  Sum_probs=77.7

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..+...+...+..++..++.++..+|           +-+.++.++.+++.+..++.                  -+.+
T Consensus        46 ~~~s~~~~~~~i~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~l~~~~------------------~~~~   96 (394)
T PRK03699         46 NTFTFLNAGILISIFLNAWLMEIIPLK-----------RQLIFGFALMILAVAGLMFS------------------HSLA   96 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHc------------------chHH
Confidence            344555666666677777665544333           23556777777766655542                  1345


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      +++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+.+.
T Consensus        97 ~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  153 (394)
T PRK03699         97 LFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAY  153 (394)
T ss_pred             HHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677899999999999999999999999999999999888888888888776653

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.042  Score=57.82  Aligned_cols=85  Identities=12%  Similarity=0.137  Sum_probs=70.9

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh------hccch
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ------EHVSW   95 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~------~~~g~   95 (462)
                      .+.+.+..-..+.|+-.+..-|+....++.-|++++.      ..-+.++|.+.++|.++|.++...+.      ...||
T Consensus       132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~------g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW  205 (495)
T KOG2533|consen  132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSER------GLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW  205 (495)
T ss_pred             hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhh------hhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence            3467777888999999999999999999999986542      45688999999999999999998863      35799


Q ss_pred             hhHHHHHHHHHHHHHHH
Q 012514           96 GAADVIITIVMAVSLLI  112 (462)
Q Consensus        96 ~~~F~i~~i~~~~~~ii  112 (462)
                      ++.|++.++.+++..++
T Consensus       206 ~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  206 RWLFIIEGVITLVLGIV  222 (495)
T ss_pred             eeehhHHHHHHHHHHhe
Confidence            99999988777766553

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.57  E-value=0.003  Score=64.20  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=78.5

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..++..+..++..|+..++.++..+|           +-+.+|.++.+++.+.....                  .+.+
T Consensus        42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~i~~~~~~~~------------------~~~~   92 (392)
T PRK10473         42 IAFSVYLAGMAAAMLFAGKIADRSGRK-----------PVAIPGAALFIIASLLCSLA------------------ETSS   92 (392)
T ss_pred             HHHHHHHHHHHHHHHhHhHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHh------------------CcHH
Confidence            344555556667778877766543222           23456777777766655432                  2345


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      +++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+...
T Consensus        93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~  149 (392)
T PRK10473         93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL  149 (392)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677899999999999999999999999999999999998888888888777654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.56  E-value=0.005  Score=63.37  Aligned_cols=108  Identities=11%  Similarity=-0.009  Sum_probs=74.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      ..++..+...+..|+...+.    +|++       +.+-+.+|.++.+++.+..+..                  .+.++
T Consensus        56 ~~s~~~~~~~~~~~~~G~l~----dr~G-------rr~~l~~~~~~~~~~~~~~~~a------------------~~~~~  106 (413)
T PRK15403         56 SVSLYLAGGMALQWLLGPLS----DRIG-------RRPVLITGALIFTLACAATLFT------------------TSMTQ  106 (413)
T ss_pred             HHHHHHHHHHHHHHhhhHHH----HHcC-------chHHHHHHHHHHHHHHHHHHHc------------------CCHHH
Confidence            33444444555566655544    4432       2234556777777666655432                  24566


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++..-+++|+|+.+..+.....+.+..|++.++..++++.....+|..+|+.+.+.+
T Consensus       107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l  163 (413)
T PRK15403        107 FLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAAL  163 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677778999999887788888888899999999999999999999988887776543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.53  E-value=0.00049  Score=71.94  Aligned_cols=112  Identities=10%  Similarity=-0.106  Sum_probs=80.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      ++.+...+.-.+..|+...+.    .|+       ++.+-+.+++++.+++.+..+..-..             ...+.+
T Consensus        68 ~~~s~~~~~~~~~~~~~G~l~----Dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  123 (467)
T PRK09556         68 MIGLGFSITYGVGKTLVGYYA----DGK-------NTKQFLPFLLILSAICMLGFGASLGS-------------GSVSLG  123 (467)
T ss_pred             HHHHHHHHHHHHHHhhhhhHh----hcc-------CccchHHHHHHHHHHHHHHHHHHHhc-------------ccchHH
Confidence            344444455556666666654    333       23445667777777766655543210             113455


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      .++...++.|++|....|.....+.+..|++.||.++|++.....+|..+++.+..
T Consensus       124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~  179 (467)
T PRK09556        124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL  179 (467)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence            66677889999999999999999999999999999999999999999999987764

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.52  E-value=0.0052  Score=62.30  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=84.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+...+...+..|+..++.++..+|           +-+.+|.++.+++++..++.                  .+.
T Consensus        44 G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~------------------~~~   94 (381)
T PRK03633         44 GVVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM------------------VGF   94 (381)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh------------------ccH
Confidence            4566666777777788877766554443           24567888888777765542                  245


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++++...++.++++....|.....+.+..|++.|+..+|.+.....+|..+|+.+.+..
T Consensus        95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         95 WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56667789999999999999888888999999999999999999999999998887643

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.50  E-value=0.0049  Score=63.22  Aligned_cols=109  Identities=14%  Similarity=0.155  Sum_probs=82.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..++..+..++..|+..++.++..           ..+-+.+|.++.+++.+..++..                  +.
T Consensus        56 ~~~~~~~~~~~~l~~~~~g~l~dr~g-----------~r~~l~~~~~~~~~~~~~~~~~~------------------~~  106 (426)
T PRK12307         56 AFLATAAFIGRPFGGALFGLLADKFG-----------RKPLMMWSIVAYSVGTGLSGLAS------------------GV  106 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-----------ChHHHHHHHHHHHHHHHHHHHHh------------------HH
Confidence            34556666777777777776554332           23345677888877777665532                  34


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++++...++.|+|+....+....++.+..|++.|+.++|++....++|..+++.+...
T Consensus       107 ~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307        107 IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            5566677899999999999999999999999999999999999999999998877653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.49  E-value=0.01  Score=60.25  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..++..+...+..|+..++.++..+|           +-+.++.++.+++.+.....                  .+.+
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~~  108 (408)
T PRK09874         58 LVFSITFLFSAIASPFWGGLADRKGRK-----------IMLLRSALGMGIVMVLMGLA------------------QNIW  108 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhCcH-----------HHHHHHHHHHHHHHHHHHHH------------------hhHH
Confidence            455666677778888887766543222           23456666666666554432                  2355


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+.+.+
T Consensus       109 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  165 (408)
T PRK09874        109 QFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL  165 (408)
T ss_pred             HHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666677888888765 467778888999999999999999998888888888776643

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.48  E-value=0.0023  Score=64.37  Aligned_cols=109  Identities=20%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..++..+...+..|+...+.+    |+       .+.+-+.+|.++.+++.+.....+                  +.+
T Consensus        30 ~~~~~~~~~~~~~~~~~g~l~d----~~-------g~~~~~~~~~~~~~i~~~~~~~~~------------------~~~   80 (377)
T PRK11102         30 MTLSAYILGFAIGQLFYGPMAD----SF-------GRKPVILGGTLVFALAAVACALAQ------------------TID   80 (377)
T ss_pred             HHHHHHHHHHHHHHHhhchHHh----hc-------CChHHHHHHHHHHHHHHHHHHHHc------------------cHH
Confidence            3445556666666677666543    32       123346677777777777665431                  234


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      .++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+...+
T Consensus        81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  138 (377)
T PRK11102         81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWL  138 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555778899999999999999999999999999999999999999999988776533

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.48  E-value=0.0029  Score=65.61  Aligned_cols=146  Identities=12%  Similarity=0.282  Sum_probs=98.4

Q ss_pred             CeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 012514          248 GFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKG  327 (462)
Q Consensus       248 g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~  327 (462)
                      +.++--+.+.++|-..-+++-++..+++    +|.       ....-|.+|+.+.++=|+.....+              
T Consensus       403 ~~~~LfGv~~a~~~~gEI~~~ffs~klI----~ki-------GHv~v~~lgLa~~~~Rf~~~S~L~--------------  457 (618)
T KOG3762|consen  403 GIKTLFGVVSALCHAGEILFYFFSFKLI----EKI-------GHVNVMYLGLACNVGRFLYYSYLQ--------------  457 (618)
T ss_pred             CcceeeeehhhhhccchHHHHHHHHHHH----HHh-------cccceeeehhhHHHHHHHHHHHhc--------------
Confidence            3333344555566655566655555544    443       345567788888777777665543              


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHH-----HhHHHHHHHHHHhhcccccccCCCc
Q 012514          328 SLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSV-----IGAANFLSSFLITVVDHVTDKSGRS  402 (462)
Q Consensus       328 ~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~-----~~~g~~lg~~l~~~~~~~~~~~~~~  402 (462)
                          ++|..+|.-++.++--..++.+..+++...+|++++..++|+.-..     -++|+++|+.++..+.         
T Consensus       458 ----n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg---------  524 (618)
T KOG3762|consen  458 ----NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG---------  524 (618)
T ss_pred             ----CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh---------
Confidence                3455566669999999999999999999999999999988876533     3555555555443221         


Q ss_pred             cccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514          403 WFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYK  441 (462)
Q Consensus       403 w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~  441 (462)
                                ...+|+.+++.+++..+++..+-+..+++
T Consensus       525 ----------~~ttf~~~giAcl~~l~~~~~iq~~l~~~  553 (618)
T KOG3762|consen  525 ----------ARTTFRIFGIACLVTLALFISIQLLLKRR  553 (618)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence                      13457778888888777777777766654

>PTZ00207 hypothetical protein; Provisional

Probab=97.48  E-value=0.0063  Score=65.21  Aligned_cols=119  Identities=13%  Similarity=0.095  Sum_probs=84.3

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      +..-+.+|.++.+++.+..++....            ....+.+.+....++.++|+....+.....+.+..| +.||.+
T Consensus        90 ~R~vllig~ll~~iG~ll~ala~~~------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a  156 (591)
T PTZ00207         90 PRPIFVLSMTVFCLGTLLFALTFQE------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAV  156 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcc------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHH
Confidence            4456778999999999887764210            011355556667889999999999999999999987 678999


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012514          371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRY  438 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~  438 (462)
                      +|++....++|..+.+.+...+           +.+     +...+|++++++.++..++.+.+.+..
T Consensus       157 ~Gi~~~~~gLGsaI~~~l~~~l-----------~~~-----~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        157 VAIMKTFTGLGSAILGSIQLAF-----------FSD-----NTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----------HHH-----hHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            9999999999998654444321           111     124567777877777766666655544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.47  E-value=0.00082  Score=67.07  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=79.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      ++.+...+...+..++..++.++..           +.+-+.+|.++.+++.+..++..                  +.+
T Consensus        34 ~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~~------------------~~~   84 (379)
T TIGR00881        34 LLLSSFSIAYGISKFVMGSVSDRSN-----------PRVFLPIGLILCAIVNLFFGFST------------------SLW   84 (379)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHhhC-----------CeehhHHHHHHHHHHHHHHHHhh------------------hHH
Confidence            4556666667777777776554332           22345677777777777665532                  345


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHH
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSF  387 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~  387 (462)
                      +++...++.++++....|.....+.+..|++.|+..+|++.....+|..+++.
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  137 (379)
T TIGR00881        85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPP  137 (379)
T ss_pred             HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHH
Confidence            56667789999999999999999999999999999999999999999999883

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.46  E-value=0.0035  Score=63.99  Aligned_cols=108  Identities=13%  Similarity=0.083  Sum_probs=82.2

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+.+.+...+.+|+..++.++..           +.+-+.+|+.+.+++.+..++..                  +.
T Consensus        47 g~~~s~~~~~~~l~~~~~g~l~dr~G-----------~r~~l~~~~~l~~~~~~~~~~a~------------------~~   97 (393)
T PRK09705         47 ALLTALPVVTMGGLALAGSWLHQHVS-----------ERRSVAISLLLIAVGALMRELYP------------------QS   97 (393)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHhC-----------chHHHHHHHHHHHHHHHHHHHCc------------------ch
Confidence            45566666777777788777664433           33457788999999988877642                  34


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++++..-++.|+|+....+...+.+.+..| +.|+.++|++......|..+|+.+...
T Consensus        98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~  154 (393)
T PRK09705         98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPW  154 (393)
T ss_pred             HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            455567789999999999999999998887 679999999998888888888776653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.46  E-value=0.0031  Score=64.97  Aligned_cols=110  Identities=18%  Similarity=0.185  Sum_probs=82.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.++..+...+..|+.+++.++..+|           +-+.+|.++.+++.+...+...               ..+.
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~~---------------~~~~  127 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAAF---------------ALSV  127 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhcc---------------ccch
Confidence            3455666677777778887766544333           2355677777777666554321               2233


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHH
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLI  389 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~  389 (462)
                      ++++...++.++|+....+....++.+..|++.|+.+++++.....+|..+++.+.
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            45666779999999999999999999999999999999999999999999998876

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.44  E-value=0.0049  Score=63.82  Aligned_cols=111  Identities=12%  Similarity=0.093  Sum_probs=76.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..++..+...+..++..++.+    |.+       +.+-+.+|.++.+++.+..+....              ...+.+
T Consensus        65 ~~~~~~~~~~~~~~~~~G~l~d----r~g-------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~  119 (438)
T TIGR00712        65 FALSAISIAYGFSKFIMGSVSD----RSN-------PRVFLPAGLILSAAVMLLMGFVPW--------------ATSSIA  119 (438)
T ss_pred             HHHHHHHHHHHHhhhccchhhh----ccC-------CceehHHHHHHHHHHHHHHhcccc--------------ccchHH
Confidence            4445555555666666666543    332       222455677777777666543211              012334


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      .+....++.++++....+...+.+.+..|++.||..+|++....++|..+++.+..
T Consensus       120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~  175 (438)
T TIGR00712       120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL  175 (438)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence            44556788999999999989999999999999999999999999999988876654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.43  E-value=0.0096  Score=59.39  Aligned_cols=58  Identities=16%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD  393 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~  393 (462)
                      +.....+.++.-....+....++.+..|.+.||..+|+.....+++..+|+++.+...
T Consensus       355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            3446688899999999999999999999999999999999999999999998876443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.066  Score=55.94  Aligned_cols=86  Identities=12%  Similarity=0.138  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-h-hhhhccchhhHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVV-V-YVQEHVSWGAADVI  101 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~-~-~l~~~~g~~~~F~i  101 (462)
                      .-++.+|.++.++..|.......-++.+.-|++    .  |+..=...=.++++|.++|..++ + .++..-.|++.+..
T Consensus       116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~----~--RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~  189 (485)
T KOG0569|consen  116 FEMLILGRLIVGLACGLSTGLVPMYLTEISPKN----L--RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAF  189 (485)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh----h--ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHH
Confidence            667899999999999999999999999775543    2  25555667788889999885544 3 34455679999999


Q ss_pred             HHHHHHHHHHHHHH
Q 012514          102 ITIVMAVSLLIFII  115 (462)
Q Consensus       102 ~~i~~~~~~iifl~  115 (462)
                      +.+..++.++...+
T Consensus       190 ~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  190 PLIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88877777765544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.42  E-value=0.0026  Score=69.19  Aligned_cols=129  Identities=12%  Similarity=0.032  Sum_probs=88.8

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh--hhhc-------c---
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKR--LGVV-------E---  321 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~--~~~~-------~---  321 (462)
                      +++.+.+.+.-.+..++..++-    .|.       ..++.+++|.++.+++.++.++.....  +.+.       .   
T Consensus        71 G~i~s~~~i~~~~~~i~v~~~~----~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~  139 (633)
T TIGR00805        71 GLINGSYEIGNLLLIIFVSYFG----TKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS  139 (633)
T ss_pred             eeeeehhhHHHHHHHHHHHHhh----ccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence            3556666667777777766533    332       356678899999999999887764211  1000       0   


Q ss_pred             ---cCCC----------------CCCc--ccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhH
Q 012514          322 ---ENPT----------------KGSL--SMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGA  380 (462)
Q Consensus       322 ---~~g~----------------~~~~--~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~  380 (462)
                         +-+.                ....  ......++..-+++|+|+....+.+..++.+..|++.|+.++|++.....+
T Consensus       140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i  219 (633)
T TIGR00805       140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF  219 (633)
T ss_pred             cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence               0000                0000  112334445679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 012514          381 ANFLSSFLITVVD  393 (462)
Q Consensus       381 g~~lg~~l~~~~~  393 (462)
                      |..+|.++.+.+.
T Consensus       220 G~~lG~llgg~l~  232 (633)
T TIGR00805       220 GPAFGYLLGSFCL  232 (633)
T ss_pred             hhHHHHHHHHHHH
Confidence            9988877766543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK12382 putative transporter; Provisional

Probab=97.40  E-value=0.0029  Score=64.23  Aligned_cols=118  Identities=12%  Similarity=0.032  Sum_probs=80.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +...+...+...+..|+..++.++..+|           +-+.+|.+..+++.+........     ..     ....+.
T Consensus        54 g~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~  112 (392)
T PRK12382         54 GIAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAIL-----PV-----SAPFKF  112 (392)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhcc-----cc-----chhHHH
Confidence            3456667777788888888877654333           23455655555443322111100     00     001345


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++++..-++.|+|+....|...+.+.+..|++.|+.++|.+.....+|..+|+.+...+
T Consensus       113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l  171 (392)
T PRK12382        113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL  171 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            56666778999999999999999999999999999999999888888888888776643

>PRK10504 putative transporter; Provisional

Probab=97.38  E-value=0.012  Score=61.33  Aligned_cols=109  Identities=13%  Similarity=0.028  Sum_probs=77.1

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..+...+...+..|+..++-++..+|           +-+.++.++.+++.+..++.                  .+.+
T Consensus        49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~~   99 (471)
T PRK10504         49 MVIVSYVLTVAVMLPASGWLADRVGVR-----------NIFFTAIVLFTLGSLFCALS------------------GTLN   99 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHh------------------CCHH
Confidence            344444555566677766655443322           23445666666666554321                  2345


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++...+++++|.....|.....+.+..|++.++..+|+......+|..+|+.+.+.+
T Consensus       100 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l  157 (471)
T PRK10504        100 ELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL  157 (471)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            5566789999999999999999999999999999999999988888888887776643

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.36  E-value=0.015  Score=64.16  Aligned_cols=107  Identities=14%  Similarity=0.139  Sum_probs=79.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      ++.+...+..++..++..++..++.||           +-+.+++++.+++.+..++.                  .+.+
T Consensus       206 ~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa------------------~s~~  256 (742)
T TIGR01299       206 MLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV------------------QGYG  256 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH------------------hhHH
Confidence            455666677777777777665444333           23456666666655555432                  1345


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      +++...++.++|.....|....++.+..|++.||..++++....++|..+++.+..
T Consensus       257 ~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~  312 (742)
T TIGR01299       257 FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW  312 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667899999999999999999999999999999999999999999888876554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.36  E-value=0.0077  Score=60.18  Aligned_cols=108  Identities=9%  Similarity=0.085  Sum_probs=75.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.+...+..++..|+..++.++..+           .+.+.+|.++.+++.+..++..                 .+.
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~i~~~~~~~~~-----------------~~~   91 (366)
T TIGR00886        40 GNLVAVPVLAGAVLRIILGFLVDKFGP-----------RYTTTLSLLLLAIPCLWAGLAV-----------------QSY   91 (366)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHHHHHh-----------------hhH
Confidence            456666677777787887776543322           2346678888888877766532                 034


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      ++++...++.+++.... +.....+.+..|++.|+..++++.....+|..+++.+..
T Consensus        92 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        92 SVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             HHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            55666778889987755 557889999999999999999988666666666655543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.064  Score=54.06  Aligned_cols=65  Identities=14%  Similarity=0.083  Sum_probs=51.6

Q ss_pred             cchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012514           21 KVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE   91 (462)
Q Consensus        21 ~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~   91 (462)
                      ......|..++.+++.|.|..+...++++++.-++++..+      =.|+---..-+|++++|.+++++-.
T Consensus       101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~------rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF------RLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH------HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            3457788888999999999999999999999988754321      1455555667899999999988765

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.34  E-value=0.018  Score=58.83  Aligned_cols=107  Identities=13%  Similarity=0.004  Sum_probs=72.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      ..+...+...+..|+...+.+    |++       ..+-+.++.++.+++.+..+..                  .+.++
T Consensus        53 ~~~~~~~~~~~~~~~~G~l~d----r~g-------~r~~l~~~~~~~~~~~~~~~~~------------------~~~~~  103 (406)
T PRK15402         53 SMTAYLAGGMFLQWLLGPLSD----RIG-------RRPVMLAGVAFFILTCLAILLA------------------QSIEQ  103 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HhC-------ChHHHHHHHHHHHHHHHHHHHH------------------ccHHH
Confidence            344445555566666665543    332       2223456666666666554432                  13445


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+.+.
T Consensus       104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~  159 (406)
T PRK15402        104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAA  159 (406)
T ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888999999899999999999999999988888877777777777766553

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.34  E-value=0.00063  Score=69.25  Aligned_cols=96  Identities=10%  Similarity=0.019  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT  103 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~  103 (462)
                      .+.++++.++.++|.+...|.......|..+++      ++.+++++++...++|..+++.+.|++.+..||+..|.+.+
T Consensus       302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  375 (399)
T PRK05122        302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA  375 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            455667778888999888888777777765432      13688999999999999999999999999899999999988


Q ss_pred             HHHHHHHHHHHHcccceeecCC
Q 012514          104 IVMAVSLLIFIIGRPFYRYRVP  125 (462)
Q Consensus       104 i~~~~~~iifl~~~~~~~~~~p  125 (462)
                      +..+++++.....+++.+|+.|
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T PRK05122        376 LAALLGLALTWLLYRRAPRAVP  397 (399)
T ss_pred             HHHHHHHHHHHHhcccccccCC
Confidence            8888887766555554444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.33  E-value=0.0098  Score=61.90  Aligned_cols=107  Identities=11%  Similarity=0.072  Sum_probs=73.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      ..+...+...+..|+..++.+    |++       +.+-+.+|.++.+++.+..++...              ...+.++
T Consensus        68 ~~~~~~i~~~~~~~~~G~l~D----r~g-------~k~~l~~~~~~~~i~~~~~~~~~~--------------~~~~~~~  122 (452)
T PRK11273         68 ALSGISIAYGFSKFIMGSVSD----RSN-------PRVFLPAGLILAAAVMLFMGFVPW--------------ATSSIAV  122 (452)
T ss_pred             HHHHHHHHHHHHHhhhhhhhh----ccC-------CchhHHHHHHHHHHHHHHHHhhhc--------------ccccHHH
Confidence            344445555666677666543    332       223466777877777776665421              0123445


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHH
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSF  387 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~  387 (462)
                      ++...++.++++....|.....+.+..|++.|+..+|++.....+|..+.+.
T Consensus       123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  174 (452)
T PRK11273        123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL  174 (452)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence            5666788999999988888888899999999999999999988888754433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.037  Score=55.97  Aligned_cols=87  Identities=10%  Similarity=0.082  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc---hhhHHHH
Q 012514           25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS---WGAADVI  101 (462)
Q Consensus        25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g---~~~~F~i  101 (462)
                      +.+++.-+++++|.|-| +...+....-||+++      +..+..++= .-|+|..+..++.|++....+   |+.+-.+
T Consensus       106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i  177 (417)
T COG2223         106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI  177 (417)
T ss_pred             HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            45666666777776666 444467777887643      367888888 999999999999999998888   9999999


Q ss_pred             HHHHHHHHHHHHHHcccc
Q 012514          102 ITIVMAVSLLIFIIGRPF  119 (462)
Q Consensus       102 ~~i~~~~~~iifl~~~~~  119 (462)
                      -.+.++++.+.+++..+.
T Consensus       178 ~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         178 YVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            899999988887776443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.29  E-value=0.0029  Score=65.97  Aligned_cols=110  Identities=16%  Similarity=0.132  Sum_probs=78.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      +.+...+.-++..++.+++.+    |++       ..+-+.++.++.+++.+......                ..+.++
T Consensus        81 ~~s~~~~~~~~~~~~~g~l~d----r~g-------~r~~l~~~~~~~~~~~~~~~~~~----------------~~~~~~  133 (465)
T TIGR00894        81 ILSSHFYGQIIIQIPVGYLAG----KYV-------FKWSIGIGMFLSSVISIVIPWAA----------------GGGIAL  133 (465)
T ss_pred             HHHHHHHHHHHHHcchHHHHH----HhC-------cchhhHHHHHHHHHHHHHHHHHH----------------HcCchH
Confidence            344444555556666665443    332       22345566666666655543321                123456


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++..-+++|++|....|.....+.+..|++.|+.++|++.....+|..+++.+.+.+
T Consensus       134 l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l  190 (465)
T TIGR00894       134 VVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL  190 (465)
T ss_pred             HHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677789999999999999999999999999999999999999999999998887644

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.25  E-value=0.01  Score=58.28  Aligned_cols=110  Identities=13%  Similarity=0.193  Sum_probs=84.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+...+..++..|+..++.++..+           .+-+.+|.++.+++.+.....                  .+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~g~~~d~~g~-----------r~~~~~~~~~~~~~~~~~~~~------------------~~~   87 (352)
T cd06174          37 GLIVSAFSLGYALGSLLAGYLSDRFGR-----------RRVLLLGLLLFALGSLLLAFA------------------SSL   87 (352)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCC-----------chhhHHHHHHHHHHHHHHHHh------------------ccH
Confidence            345566667777777887776543322           224667778777777766543                  134


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++++...++.+++..+..+....++.+..|++.|+..+++......+|..+++.+...+
T Consensus        88 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  146 (352)
T cd06174          88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL  146 (352)
T ss_pred             HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            56667789999999999999999999999999999999999999999999998877644

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.24  E-value=0.0061  Score=60.70  Aligned_cols=107  Identities=21%  Similarity=0.165  Sum_probs=76.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+...+...+..|+...+.++..+|           +-+.+|.++.+++.+..++..                  +.
T Consensus        41 g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~------------------~~   91 (377)
T TIGR00890        41 AIWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD------------------SL   91 (377)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH------------------HH
Confidence            3455666677777778877765543322           235677888888777666542                  34


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      +.+....++.++|+....+.....+.+..|+ .|+.+++++....++|..+++.+..
T Consensus        92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~  147 (377)
T TIGR00890        92 AALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLIT  147 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHH
Confidence            4455566799999998888888888888885 5999999999999999887665554

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.24  E-value=0.019  Score=59.91  Aligned_cols=119  Identities=17%  Similarity=0.093  Sum_probs=79.7

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..+...+..++.+++..++-+++.||           +-+.++.++.+++.+..++.+........      .+....+
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~~~~------~~~~~~~  121 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTSIGP------DNTGYVP  121 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhccccccccc------cchhHHH
Confidence            445555666777777777766544433           23556666666666655543211000000      0011233


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      +++..-++.|+|.....|....++.+..|++.||.++|++.....+|..++..+..
T Consensus       122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~  177 (479)
T PRK10077        122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY  177 (479)
T ss_pred             HHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556699999999999999999999999999999999999999999888765543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.23  E-value=0.012  Score=59.70  Aligned_cols=89  Identities=13%  Similarity=0.138  Sum_probs=64.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514          332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS  411 (462)
Q Consensus       332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~  411 (462)
                      +.++++..-++.|+||.. .+.....+.+..|++.|+.+++++.....+|..+++.+...+...  .   +|        
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~--~---gW--------  143 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA--G---GL--------  143 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c---ch--------
Confidence            567777788999999986 456666678999999999999999999999999998776654310  0   23        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514          412 RLDKFYWLLAALVAANLFVYVVVAR  436 (462)
Q Consensus       412 ~l~~~f~~la~l~~~~~v~~~~~~~  436 (462)
                        ...|...++++++..++.+...+
T Consensus       144 --r~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903       144 --QLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHcC
Confidence              23456666666665554444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.22  E-value=0.0013  Score=55.28  Aligned_cols=86  Identities=16%  Similarity=0.296  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.+.+...+.+++.+...+...++..|.+++++      +.+..++.+...++|..+++.+.+++.+..+|+..|.+.
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  123 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL  123 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence            35667777888999999999999999999987543      257899999999999999999999999888999999987


Q ss_pred             HHHHHHHHHHHH
Q 012514          103 TIVMAVSLLIFI  114 (462)
Q Consensus       103 ~i~~~~~~iifl  114 (462)
                      ++..+++.+...
T Consensus       124 ~~~~~~~~~~~~  135 (141)
T TIGR00880       124 AILALAAFILLA  135 (141)
T ss_pred             HHHHHHHHHHHh
Confidence            777666665444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.21  E-value=0.011  Score=60.45  Aligned_cols=107  Identities=8%  Similarity=-0.027  Sum_probs=78.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+...+...++.|+.+++-++..+|           +-+.++.++.+++.+..++..                  +.
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~laDr~grr-----------~vl~~~~~~~~~~~~~~~~~~------------------~~   91 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAFADSFPKG-----------RVMFIANGIKLLGCLLMLFGI------------------HP   91 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhccCCc-----------hhhHHHHHHHHHHHHHHHHHH------------------HH
Confidence            4566677777888888888766443222           235566666665554433321                  11


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                         +...+++++++.+..|...+.+.+..|++.|+.++|+......+|..+|+.+.+.+
T Consensus        92 ---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         92 ---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               23557899999999999999999999999999999999988888888888877643

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.20  E-value=0.0071  Score=63.52  Aligned_cols=142  Identities=12%  Similarity=0.052  Sum_probs=92.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      .......+...+..++..++-++.   .       ...+-+.+|.++.+++++..++..                  +.+
T Consensus        52 ~~~~~~~~~~~~~~~~~G~laDr~---~-------G~~~~l~~~~~~~~~g~~~~~~~~------------------~~~  103 (475)
T TIGR00924        52 IIFGAYSALVYLLTSVGWWFGDRV---W-------GTKKTMVLGGIVLMLGHFMLAMSI------------------YPD  103 (475)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhh---c-------chHHHHHHHHHHHHHHHHHHHhcc------------------cHh
Confidence            344444455555555555544431   1       123346688888888887665421                  233


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh---hhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSM---RSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS  411 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~---~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~  411 (462)
                      +++...++.++|+.+..|....++.++.|++.   |+...++++....+|..+|+.+.+.+..            +.+  
T Consensus       104 ~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~------------~~g--  169 (475)
T TIGR00924       104 LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE------------NYG--  169 (475)
T ss_pred             HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH------------hcC--
Confidence            44556678999999999999999999998754   8888999999999999999888764431            111  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514          412 RLDKFYWLLAALVAANLFVYVVVARRYS  439 (462)
Q Consensus       412 ~l~~~f~~la~l~~~~~v~~~~~~~~~~  439 (462)
                       ...-|...++.++++.++++...+.++
T Consensus       170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       170 -YHVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHcccccc
Confidence             133355556666666666666666664

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.20  E-value=0.21  Score=52.10  Aligned_cols=61  Identities=15%  Similarity=-0.025  Sum_probs=46.2

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYV   89 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l   89 (462)
                      .+.+.+++..++.++| |..-+.....+.+.|++++      +..+..++....|+|..++.++.+.+
T Consensus       126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~  186 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLV  186 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3477888888899998 5566778888999987532      36788888888888887777666553

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.18  E-value=0.027  Score=59.09  Aligned_cols=109  Identities=10%  Similarity=0.096  Sum_probs=79.9

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      ++.+...+..++..++..++.++..+           .+-+.++.++.+++.+..++.                  .+.+
T Consensus        59 ~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~~~~~~~~~~------------------~~~~  109 (496)
T PRK03893         59 SLISAAFISRWFGGLLLGAMGDRYGR-----------RLAMVISIVLFSVGTLACGFA------------------PGYW  109 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHHHHH------------------hHHH
Confidence            34444555555666666665543322           223556777777777666543                  1345


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++...++.+++.....+.....+.+..|++.|+..+|++....++|..+++.+...+
T Consensus       110 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  167 (496)
T PRK03893        110 TLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV  167 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666789999999999999999999999999999999999999999999998877643

>TIGR00898 2A0119 cation transport protein

Probab=97.15  E-value=0.0045  Score=65.19  Aligned_cols=109  Identities=11%  Similarity=0.065  Sum_probs=81.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++.+++..+..++..++.+.+-++..||           +-+.++.++.+++.+..++.                  .+.
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr-----------~~~~~~~~~~~i~~~~~~~~------------------~~~  180 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRK-----------KVLLLSTLVTAVSGVLTAFS------------------PNY  180 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHc------------------ccH
Confidence            4566666777777777777765443322           22455666666665554432                  245


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++++...++.|++.....+....++.+..|++.|+.+++++.+..++|..+++.+...
T Consensus       181 ~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  238 (505)
T TIGR00898       181 TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF  238 (505)
T ss_pred             HHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667788999999999999999999999999999999999999999999888876553

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.13  E-value=0.044  Score=56.93  Aligned_cols=82  Identities=18%  Similarity=0.197  Sum_probs=68.7

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      +.+-+.++++.-++..+..++..                  +.+.+...-+++|++|.... .....+++..|++.|+.+
T Consensus        91 ~K~vL~l~~l~Wsl~t~L~~fa~------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ra  151 (511)
T TIGR00806        91 YKPVLVLQALSFVCVWLLLLLGT------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRA  151 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHH
Confidence            34456677777777776666542                  35566777899999999999 999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHhh
Q 012514          371 IAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      +|++..+..+|..+++.+...
T Consensus       152 tsi~~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       152 AAYSRAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999886

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.12  E-value=0.0097  Score=62.52  Aligned_cols=94  Identities=12%  Similarity=0.145  Sum_probs=71.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCC-ccccCCCccc
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGR-SWFGKDMNSS  411 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~-~w~~~~~n~~  411 (462)
                      .+-++...+++|+-|-...|.........-.++.||..+|+|+...++|+.+|+++...+.+.....+. +|        
T Consensus       134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW--------  205 (495)
T KOG2533|consen  134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW--------  205 (495)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc--------
Confidence            444555668999999999999999999999999999999999999999999999998764321111110 23        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514          412 RLDKFYWLLAALVAANLFVYVVVAR  436 (462)
Q Consensus       412 ~l~~~f~~la~l~~~~~v~~~~~~~  436 (462)
                        .+.|..-++++++.+++.++.-+
T Consensus       206 --~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  206 --RWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             --eeehhHHHHHHHHHHheEEEEec
Confidence              34577778888877755444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.11  E-value=0.017  Score=60.99  Aligned_cols=113  Identities=15%  Similarity=0.118  Sum_probs=79.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      +.+...+..++..++..++.++..||           +-+.+++++.+++.+..++...        +    ....+.++
T Consensus        61 ~~~~~~ig~~ig~~~~g~l~d~~Grr-----------~~~~~~~~~~~v~~~~~~~~~~--------~----~~~~~~~~  117 (502)
T TIGR00887        61 VNGSASIGTLAGQLFFGWLADKLGRK-----------RVYGMELIIMIIATVASGLSPG--------S----SPKSVMAT  117 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHHHccC--------c----ccchHHHH
Confidence            45555555666666666655444333           2245666666666655543210        0    01122456


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++...++.|+|+....+....++.+.+|++.||.+++++.....+|..+++.+...
T Consensus       118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887       118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778999999999999999999999999999999999999999999888877653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10133 L-fucose transporter; Provisional

Probab=97.10  E-value=0.042  Score=57.05  Aligned_cols=110  Identities=8%  Similarity=-0.016  Sum_probs=79.1

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      ++.+...+...+..|+...+.+++.+           .+-+.+|+++.+++.+.......               ..+.+
T Consensus        65 l~~~~~~~g~~i~~~~~g~l~dr~G~-----------r~~l~~g~~~~~~~~~l~~~~~~---------------a~~~~  118 (438)
T PRK10133         65 LIQSAFYFGYFIIPIPAGILMKKLSY-----------KAGIITGLFLYALGAALFWPAAE---------------IMNYT  118 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHHHHHHh---------------cCCHH
Confidence            45556666777777777766544333           33466788888887765432110               13456


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      +++...++.|+|.....+....++.+..|++.+...++++....++|..+|+.+..
T Consensus       119 ~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778899999999999999999999888888877788888888888888877654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.08  E-value=0.036  Score=56.28  Aligned_cols=109  Identities=18%  Similarity=0.103  Sum_probs=76.1

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..+...+..++..|+...+.++..           +.+-+.+|.++.+++.+.....                  .+.+
T Consensus        47 ~~~~~~~~~~~~~~~~~G~l~Dr~g-----------rr~~~~~~~~~~~~~~~~~~~~------------------~~~~   97 (394)
T PRK11652         47 AVMAAYLLTYGLSQLFYGPLSDRVG-----------RRPVILVGMSIFILGTLVALFA------------------HSLT   97 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhcC-----------ChHHHHHHHHHHHHHHHHHHHH------------------ccHH
Confidence            3445556666667777766554332           2223556777776666554432                  1345


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++...++.+++.....+...++..+..|++.++..++++.+...+|..+++.+...+
T Consensus        98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  155 (394)
T PRK11652         98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL  155 (394)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666778889998888888889999999999999999999888888888887776543

>TIGR00897 2A0118 polyol permease family

Probab=97.08  E-value=0.022  Score=58.14  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=75.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+...+...+..|+..++.++..           +.+-+..|.++.+++.+.......              ...+.
T Consensus        51 g~~~~~~~~~~~i~~~~~g~l~dr~g-----------~k~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~  105 (402)
T TIGR00897        51 ASAFTLYGIAAAISAWISGVVAEIIG-----------PLKTMMIGLLLWCVGHAAFIVFGL--------------GHANY  105 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHHHHHHHHhc--------------cCccH
Confidence            34556666777777788777654332           223455677777766543322110              01234


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHH-HHHHHHHh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAAN-FLSSFLIT  390 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~-~lg~~l~~  390 (462)
                      +.++...++.++|.....+.....+.+..|++.|+.++|++....++|. .+++.+.+
T Consensus       106 ~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~  163 (402)
T TIGR00897       106 PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS  163 (402)
T ss_pred             HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445577888999888888888888899999999999999999998886 46665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.07  E-value=0.019  Score=58.92  Aligned_cols=115  Identities=13%  Similarity=-0.044  Sum_probs=80.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+...+..++..|+..++.++..+           .+-+.++.++.+++++..++....             ...+.
T Consensus        55 g~~~~~~~l~~~~~~~~~G~l~dr~g~-----------~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~  110 (417)
T PRK10489         55 GLSVTLTGGAMFIGLMVGGVLADRYDR-----------KKLILLARGTCGLGFIGLALNAFL-------------PEPSL  110 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhcCC-----------ceEEEehHHHHHHHHHHHHHHHHc-------------CCCcH
Confidence            456666777777787877776543322           223445666666666655432110             01244


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++....++.+++..+..+.....+.+..|++.++..++++....++|..+|+.+.+.+
T Consensus       111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l  169 (417)
T PRK10489        111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL  169 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence            55556678889999999999999999999999999999999888888888887776643

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.06  E-value=0.018  Score=60.05  Aligned_cols=135  Identities=11%  Similarity=0.030  Sum_probs=82.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..++..+...+..|+..++.+    |++       ..+-+.+|.++.+++.+..++..                  +.+
T Consensus        58 ~~~s~~~~~~~~~~~~~G~l~d----r~g-------~r~~l~~~~~~~~~~~~~~~~~~------------------~~~  108 (455)
T TIGR00892        58 WISSIMLAVLYAGGPISSILVN----RFG-------CRPVVIAGGLLASLGMILASFSS------------------NVI  108 (455)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHH----HcC-------chHHHHhhHHHHHHHHHHHHHhh------------------hHH
Confidence            3444444555666677666543    432       22345567777777666655432                  222


Q ss_pred             hHHH-HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514          335 WLAP-QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL  413 (462)
Q Consensus       335 wli~-~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l  413 (462)
                      .+.. .-++.++|+....+.....+.+..| +.|+..+|++.....+|..+++.+...+..            ..+   .
T Consensus       109 ~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~------------~~g---w  172 (455)
T TIGR00892       109 ELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE------------SFG---W  172 (455)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH------------HhC---h
Confidence            2222 2367789998777777777777776 689999999999999999888777653321            111   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 012514          414 DKFYWLLAALVAANLFVYVVV  434 (462)
Q Consensus       414 ~~~f~~la~l~~~~~v~~~~~  434 (462)
                      ..-|++.++++++..+..++.
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            334666777666555444433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.044  Score=57.96  Aligned_cols=118  Identities=12%  Similarity=0.068  Sum_probs=80.3

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      ...-+.++++..+++.++..+..                  +.+-++..-++.|+..............+..+.+.-+-+
T Consensus       364 ~~~~~~~~ll~~gl~~~~~p~~~------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a  425 (509)
T KOG2504|consen  364 ALVLFLLTLLIAGLARLFLPFAT------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNA  425 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchH
Confidence            34445567777777665554421                  223334444778888888888887888999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514          371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSY  440 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~  440 (462)
                      .|+..+..+++..+|+.+.+.+.            |..+  +++..|...+...+++++.+++....+++
T Consensus       426 ~Gl~l~~~gi~~l~gpPiag~~~------------d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~  481 (509)
T KOG2504|consen  426 YGLLLLFQGIGALVGPPIAGLLY------------DITG--NYDHAFYFCGLCFLLSAVLLLILRECLKR  481 (509)
T ss_pred             HHHHHHHhHHHHHcCcccceeee------------eccC--CeeeehhhcChHHHHHHHHHHHhHHHHHh
Confidence            99999999999999988876332            2222  13455677777777777766666633443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.05  E-value=0.012  Score=62.15  Aligned_cols=85  Identities=11%  Similarity=0.084  Sum_probs=64.7

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCch--hhh
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDS--MRS  368 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~--~~g  368 (462)
                      ..+-+.+|.++.+++.+.+++...               ...  .++...+++++|+.+..|....++.++.|++  .|+
T Consensus        80 ~r~~~~~g~~~~~~g~~~~~~~~~---------------~~~--ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~  142 (489)
T PRK10207         80 TKRTIVLGAIVLAIGYFMTGMSLL---------------KPD--LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLD  142 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcc---------------chh--HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhh
Confidence            344577899988888877765321               011  1224668899999999999999999999887  457


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          369 LGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       369 ~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ...+++++...+|..+|+.+.+.+
T Consensus       143 ~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207        143 GAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999998877644

>TIGR00901 2A0125 AmpG-related permease

Probab=97.03  E-value=0.021  Score=57.06  Aligned_cols=83  Identities=14%  Similarity=0.182  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHH
Q 012514          296 GIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYL  375 (462)
Q Consensus       296 ~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~  375 (462)
                      ..+.++.+++++.+++...               ..+.+++...+++.+++-....|...+++.+.+|++.|+.+.|+..
T Consensus        61 ~~~~~~~~~~~~~l~~~~~---------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~  125 (356)
T TIGR00901        61 VLTQVLLLSLLLILSFLVP---------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYI  125 (356)
T ss_pred             HHHHHHHHHHHHHHHcCCc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHH
Confidence            4566666666555543211               1345556666778888888889999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHhhcc
Q 012514          376 SVIGAANFLSSFLITVVD  393 (462)
Q Consensus       376 l~~~~g~~lg~~l~~~~~  393 (462)
                      ...++|..+++.+...+.
T Consensus       126 ~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901       126 VGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999888876443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.02  E-value=0.21  Score=53.00  Aligned_cols=84  Identities=13%  Similarity=0.152  Sum_probs=62.9

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-cchhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH-VSWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i  101 (462)
                      +...+++|.++.++|.|+..-.+.-++++.-+++      .|...-+.+.+.+++|.+++..+....++. ++|+..+++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence            5789999999999999999988888888875432      236778889999999999996555555443 489988877


Q ss_pred             HHHHHHHHHHH
Q 012514          102 ITIVMAVSLLI  112 (462)
Q Consensus       102 ~~i~~~~~~ii  112 (462)
                      ..+..++-.+.
T Consensus       215 ~~i~~~~~~~~  225 (513)
T KOG0254|consen  215 ALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHH
Confidence            55554444443

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.98  E-value=0.075  Score=56.05  Aligned_cols=106  Identities=15%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCccc-hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHH
Q 012514          270 FYEKILVPVLRRATGNERGIQILQ-RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADG  348 (462)
Q Consensus       270 i~~~~~~p~~~r~~~~~~~~s~~~-ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl  348 (462)
                      +...+|-|+..|+.. | .+...+ .+.++.++.+++...+++...               ..+.+|+....++.+++-.
T Consensus        60 ~~~~l~gpl~Dr~~~-~-~~Grrr~~ll~~~i~~~~~~~~~a~~~~---------------~~~l~~l~~~~~l~~~~~a  122 (491)
T PRK11010         60 VFKFLWSPLMDRYTP-P-FLGRRRGWLLATQLLLLVAIAAMGFLEP---------------GTQLRWLAALAVVIAFCSA  122 (491)
T ss_pred             HHHHHHHHHHHcccc-c-CCCCchHHHHHHHHHHHHHHHHHHHcCC---------------cchHHHHHHHHHHHHHHHH
Confidence            455666777777531 1 111222 355677777677666654321               1346677778888999999


Q ss_pred             HHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          349 FALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       349 ~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ...+...+++.+..|++.|+.++|+......+|..+++.+...+
T Consensus       123 ~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l  166 (491)
T PRK11010        123 SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWL  166 (491)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998776543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.97  E-value=0.019  Score=60.65  Aligned_cols=117  Identities=9%  Similarity=0.035  Sum_probs=77.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--hhHH
Q 012514          293 QRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSM--RSLG  370 (462)
Q Consensus       293 ~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~--~g~~  370 (462)
                      +-+.+|.++.+++....++..                 .+.+++....++.++|..+..|....++.++.|++.  ++..
T Consensus        89 ~~~~~g~~~~~ig~~l~~~~~-----------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~  151 (500)
T PRK09584         89 RVIMLGAIVLAIGYALVAWSG-----------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGA  151 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhc
Confidence            346678888887766655421                 112234446678899999999999999999988653  4457


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514          371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYK  441 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~  441 (462)
                      +++++....+|..+|+.+.+.+.            ++.+   ...-|...++.+++..+.++...++++++
T Consensus       152 ~~~~~~~~~iG~~~gp~i~g~l~------------~~~g---~~~~F~i~~i~~~i~~i~~~~~~~~~~~~  207 (500)
T PRK09584        152 FTMYYMSINIGSFFSMLATPWLA------------AKYG---WSVAFALSVVGMLITVVNFAFCQRWVKQY  207 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH------------HhhC---HHHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence            78888999999999988776432            1121   13335555656666666666666655544

>PRK11043 putative transporter; Provisional

Probab=96.94  E-value=0.05  Score=55.37  Aligned_cols=108  Identities=15%  Similarity=0.061  Sum_probs=72.7

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..++..+...+..++..++.+    |++       ..+-+.+|.++.+++.+..++.                  .+.+
T Consensus        45 ~~~s~~~~~~~~~~~~~g~l~d----r~g-------~r~~~~~~~~~~~~~~~~~~~~------------------~~~~   95 (401)
T PRK11043         45 ASLSLFLAGFALGQLLWGPLSD----RYG-------RKPVLLAGLSLFALGSLGMLWV------------------ESAA   95 (401)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHh----hcC-------CcHHHHHHHHHHHHHHHHHHHh------------------cCHH
Confidence            3445555555666666666543    332       2234556776766666655432                  2355


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      +++...++.++|.....+...+.+.+..|++.++...+......++|..+++.+.+.
T Consensus        96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~  152 (401)
T PRK11043         96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAW  152 (401)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666677888999888888888999999999988888888777777777777666553

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.92  E-value=0.021  Score=66.47  Aligned_cols=114  Identities=11%  Similarity=-0.001  Sum_probs=78.7

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..++..+..+++.|+.+++..++.+|           +-+.++.++.+++.+...+...               .-+.
T Consensus        50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk-----------~~l~~~~~~~~~~~~~~~~~~~---------------~~~~  103 (1146)
T PRK08633         50 AIVNALFLLPFLLLSSPAGFLADKFSKN-----------RVIRIVKLFEVGLTLLIVLAYY---------------LGWF  103 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHhhhcccccHH-----------HHHHHHHHHHHHHHHHHHHHHH---------------HccH
Confidence            3444555556667777777765544333           1233444444444333322211               1235


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD  393 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~  393 (462)
                      ++++...++.|+++.+..|...+++.+..|++.|+.++|+.....++|..+|+.+.+.+.
T Consensus       104 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        104 WLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            666777899999999999999999999999999999999999999999999888776543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.80  E-value=0.12  Score=52.32  Aligned_cols=92  Identities=12%  Similarity=0.042  Sum_probs=66.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh---HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW---LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w---li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      -+-.|.++.+.+..++...-...-...++    . ...+..|   ....|.+.|+|--......++++.+.+|++.|+..
T Consensus        52 yI~~G~~~~~~g~~~ap~a~~~l~~~~~~----~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~  126 (403)
T PF03209_consen   52 YIWGGTLLQAGGLAIAPFALLLLAESGQQ----S-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRV  126 (403)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccccc----c-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhh
Confidence            35578887777777666543321110001    1 1122333   33678999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHh
Q 012514          371 IAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~  390 (462)
                      .++-+.+.=+|..+++.+.+
T Consensus       127 v~ivw~Mli~G~iv~ai~~g  146 (403)
T PF03209_consen  127 VAIVWVMLIVGIIVSAIVFG  146 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987766

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.79  E-value=0.02  Score=57.28  Aligned_cols=139  Identities=9%  Similarity=-0.049  Sum_probs=78.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhh-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIG-IGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~-iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++.+...+..++..|+..++.+    |.+       ..+.+. .+.++.+++.+..+..                  .+.
T Consensus        37 ~~~~~~~~~~~~~~~~~g~l~D----r~g-------~r~~~~~~~~~~~~~~~~~~~~~------------------~~~   87 (375)
T TIGR00899        37 LFYTGSAIVGIAVSQLLATRSD----YQG-------DRKGLILFCCLLAALACLLFAWN------------------RNY   87 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh----ccC-------CchHHHHHHHHHHHHHHHHHHhc------------------chH
Confidence            4455556666777787776543    321       222333 3445444444443321                  234


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH--HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG--IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS  411 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~--~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~  411 (462)
                      ++++..-++++.++....|...+.+.+..|++.|+..  .+......++|..+|+.+.+...            +..+  
T Consensus        88 ~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~------------~~~~--  153 (375)
T TIGR00899        88 FLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA------------LGFG--  153 (375)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH------------Hhcc--
Confidence            4444455667777777888888888888888777643  56666667778877776665332            1111  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhc
Q 012514          412 RLDKFYWLLAALVAANLFVYVVVARR  437 (462)
Q Consensus       412 ~l~~~f~~la~l~~~~~v~~~~~~~~  437 (462)
                       ....|+..+.+.++..++.+...++
T Consensus       154 -~~~~f~~~~~~~~~~~~~~~~~~~~  178 (375)
T TIGR00899       154 -FTVMFLTAALAFVLCGVLVWLFLPS  178 (375)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHhCCC
Confidence             1234566666665555554443443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.76  E-value=0.0045  Score=66.14  Aligned_cols=215  Identities=20%  Similarity=0.137  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT  103 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~  103 (462)
                      ....|+...+..-+ +..++|++++.|+++....-  -+.+..+|..+||.||+++++..+.            .|+++.
T Consensus        59 nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~--g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~  123 (571)
T KOG1237|consen   59 NLVTYLTLELHASG-GGAANNVNAFGGTQFLLPLL--GAFLADSFLGRYFTINIGSLISLLG------------LFGLTL  123 (571)
T ss_pred             HHHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHH
Confidence            34455666666666 89999999999999876222  2234678999999999999986554            666666


Q ss_pred             HHHHHHHHHHHHcccceeecC-CCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514          104 IVMAVSLLIFIIGRPFYRYRV-PKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI  182 (462)
Q Consensus       104 i~~~~~~iifl~~~~~~~~~~-p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i  182 (462)
                      ..++.++..+-+   .+.... ..++|-+....++..++......               .++.+      ..+++..+ 
T Consensus       124 ~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G---------------~gg~r------~~~~~fGa-  178 (571)
T KOG1237|consen  124 SAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALG---------------AGGIR------PCLLAFGA-  178 (571)
T ss_pred             HHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheec---------------cCCCC------Ccchhhcc-
Confidence            666666543332   111111 11222222233444444332110               01100      00111110 


Q ss_pred             hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhcc-CCCCCeeeCccccchhhH
Q 012514          183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNR-EIGNGFLIPPASVFGLTA  261 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~-~~g~g~~ip~~~~~~~n~  261 (462)
                                 +.   +.+...++++        .....+.|..+.|..+.+..++..++. +.. ||.+-++.....|.
T Consensus       179 -----------dQ---fd~~~~~~~~--------~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~  235 (571)
T KOG1237|consen  179 -----------DQ---FDELDPVEVK--------GIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNA  235 (571)
T ss_pred             -----------cc---cCccCcchhh--------CcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHH
Confidence                       00   0011111222        224567788888888888888754443 334 88899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 012514          262 VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAAL  311 (462)
Q Consensus       262 l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~  311 (462)
                      +.+++|.+....+.+|       +|++ +  .+..+|-++.+++.-....
T Consensus       236 lai~iF~~g~~~y~~~-------~p~g-s--p~t~i~~Vlvaa~~k~~~~  275 (571)
T KOG1237|consen  236 LAILIFLPGFPFYRYK-------KPRG-S--PKTRIGQVLVAAAFKRKAV  275 (571)
T ss_pred             HHHHHHHcCceeEEee-------CCCC-C--chhHHHHHHHHHHHHHhcc
Confidence            9999998887653321       1211 3  5666888888888876553

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.74  E-value=0.00029  Score=74.88  Aligned_cols=125  Identities=18%  Similarity=0.088  Sum_probs=3.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--c--c---------
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGV--V--E---------  321 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~--~--~---------  321 (462)
                      ++.+.+-+.-+++..++.++    ..|    .   +.++.+++|.+++++|.++.++-+..--.+  .  .         
T Consensus        42 ~i~s~~di~~~~~~~~vsy~----g~~----~---hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~  110 (539)
T PF03137_consen   42 LISSSYDIGSLVVVLFVSYF----GGR----G---HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS  110 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH----hhh----c---CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence            34455555555555555542    122    1   567899999999999999888654321111  0  0         


Q ss_pred             -cCC--------C----------CCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHH
Q 012514          322 -ENP--------T----------KGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAAN  382 (462)
Q Consensus       322 -~~g--------~----------~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~  382 (462)
                       +.+        .          +.....-.++++..-++.|+|..-..+.|.+++.+.++++..++|.|+.+.+..+|.
T Consensus       111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP  190 (539)
T PF03137_consen  111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP  190 (539)
T ss_dssp             -----------------------------------------SSS------------------------------------
T ss_pred             cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence             001        0          011122234455667999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHh
Q 012514          383 FLSSFLIT  390 (462)
Q Consensus       383 ~lg~~l~~  390 (462)
                      .+|-++.+
T Consensus       191 a~Gf~lg~  198 (539)
T PF03137_consen  191 ALGFLLGS  198 (539)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            76644443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.70  E-value=0.047  Score=57.20  Aligned_cols=172  Identities=9%  Similarity=0.077  Sum_probs=95.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc-cc
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLS-MS  332 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~-~s  332 (462)
                      ...+.+.++.-++.+|+.+++-+++-.|++++    ++.  +..|.+..+++++.++..........+..  ++... ..
T Consensus        42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~~~~~~--~~~~~~~~  113 (477)
T TIGR01301        42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHLFGDNL--DKKTKPRA  113 (477)
T ss_pred             HHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhhccccc--cccchhHH
Confidence            35667778888888898888766543343321    121  33466777777776665432110000000  00111 11


Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhh--hHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccC---C
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMR--SLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGK---D  407 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~--g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~---~  407 (462)
                      .++.+..+.++.++--...+..-+++.+..|++.|  +.+.+......++|+.+|..+.+.....      .+++-   +
T Consensus       114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~------~~~~~~~~~  187 (477)
T TIGR01301       114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY------KIFPFTKTE  187 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------Hhccccccc
Confidence            22333344455556666667788999999999976  5788888888899999998776532110      01110   0


Q ss_pred             ---CccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514          408 ---MNSSRLDKFYWLLAALVAANLFVYVVVARRYS  439 (462)
Q Consensus       408 ---~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~  439 (462)
                         .-..+...-|.+-+++.++..++-.+..|.+.
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence               00112344455555666666666666666554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.70  E-value=0.019  Score=66.97  Aligned_cols=62  Identities=13%  Similarity=-0.047  Sum_probs=56.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514          332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD  393 (462)
Q Consensus       332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~  393 (462)
                      +.++++..-+++++++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+.+.+.
T Consensus       107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~  168 (1140)
T PRK06814        107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT  168 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777778899999999999999999999999999999999999999999999988887553

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.62  E-value=0.057  Score=55.08  Aligned_cols=84  Identities=14%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF  373 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~  373 (462)
                      .+.++.++.++++..+++...               ..+.++++..+++.++......|...+++.+..|++.|+.+.++
T Consensus        70 ~l~~~~~~~~l~~~~l~~~~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~  134 (402)
T PRK11902         70 WLLLTQVGLAASIAAMAFCPP---------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAV  134 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCc---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHH
Confidence            366667777777776654311               12455566676788888999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhhc
Q 012514          374 YLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       374 ~~l~~~~g~~lg~~l~~~~  392 (462)
                      .....++|..+++.+...+
T Consensus       135 ~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902        135 KVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHH
Confidence            9999999999988776543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.59  E-value=1.3  Score=46.90  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=67.2

Q ss_pred             cchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHH
Q 012514           21 KVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADV  100 (462)
Q Consensus        21 ~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~  100 (462)
                      ..+.+.+++...+.+++.++...+...+++|.+.++.      |..+-++ +.....|+.+++.+.+++..  +|++.++
T Consensus       168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence            3457889999999999999999999999999988654      2455666 77777888888888888876  8999999


Q ss_pred             HHHHHHHHHHHH
Q 012514          101 IITIVMAVSLLI  112 (462)
Q Consensus       101 i~~i~~~~~~ii  112 (462)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            877776666555

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.50  E-value=0.036  Score=58.84  Aligned_cols=114  Identities=15%  Similarity=0.104  Sum_probs=78.1

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514          253 PASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS  332 (462)
Q Consensus       253 ~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s  332 (462)
                      .+.+++...+..+++.|+-+.+.+++-||           +-+..+-++.++..+.+++....             ...+
T Consensus        47 valv~~a~~LP~~Llsl~aG~laDr~drr-----------rili~~~~~~~~~~~~L~~l~~~-------------~~~~  102 (524)
T PF05977_consen   47 VALVQAASTLPILLLSLFAGALADRFDRR-----------RILILSQLLRALVALLLAVLAFF-------------GLLS  102 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccch-----------HHHHHHHHHHHHHHHHHHHHHHh-------------CcCC
Confidence            35677888888999999988877654333           22334444444444444333221             1356


Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      +|.++...++.+++..+..|.-.+.+-++.|++.-..+.++..+...++..+|+.+.+
T Consensus       103 ~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen  103 PWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence            6666777799999999999999999999999998887777777666665555555544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.50  E-value=0.022  Score=61.75  Aligned_cols=167  Identities=14%  Similarity=0.077  Sum_probs=104.5

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHH----hhhhc-----ccCC--------------C------CC---Ccccc-hh-h
Q 012514          290 QILQRIGIGMLFSIATMVFAALVEKK----RLGVV-----EENP--------------T------KG---SLSMS-VF-W  335 (462)
Q Consensus       290 s~~~ki~iG~~l~~l~~~~~~~~~~~----~~~~~-----~~~g--------------~------~~---~~~~s-~~-w  335 (462)
                      ..++.+++|.++++++.++.++.+..    +++..     .++.              .      +.   ...-+ +| .
T Consensus       160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  239 (735)
T KOG3626|consen  160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL  239 (735)
T ss_pred             CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence            56788999999999999998876431    11100     0000              0      01   11222 22 2


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCC-CccccCCCccchhH
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSG-RSWFGKDMNSSRLD  414 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~-~~w~~~~~n~~~l~  414 (462)
                      ++..-++.|+|+--+.+.|.+++.+-+-++...++.|+.+....+|..+|=++.++..++-. |. ..-..-+.++++-.
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYv-D~~~~~~~it~~DPrWI  318 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYV-DFGLSPIGITPTDPRWI  318 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeee-ccccCCCCCCCCCcchh
Confidence            34455899999999999999999999999999999999998887777766555554443211 10 00000011122211


Q ss_pred             ----HHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCCC
Q 012514          415 ----KFYWLLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQGDR  457 (462)
Q Consensus       415 ----~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (462)
                          .=|.+.++++++..+-++++-|.+.+..++++....|..+.|.
T Consensus       319 GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~  365 (735)
T KOG3626|consen  319 GAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTES  365 (735)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhccccccc
Confidence                1245677888888888888888888765555555555555554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.48  E-value=0.037  Score=58.25  Aligned_cols=87  Identities=13%  Similarity=0.130  Sum_probs=67.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch---hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 012514          292 LQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV---FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRS  368 (462)
Q Consensus       292 ~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~---~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g  368 (462)
                      .+-+.+++++.+++.+..++...+             ..+..   ++++..-+++|+|+....|.+..++.+..|++.||
T Consensus        87 r~~l~~~~~l~~i~~~~~a~~~~~-------------~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg  153 (490)
T PRK10642         87 QKILAITIVIMSISTFCIGLIPSY-------------ATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG  153 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccH-------------HHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCc
Confidence            345678888888888877765321             01111   23566778999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhh
Q 012514          369 LGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       369 ~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      .+++++.....+|..+|+.+...
T Consensus       154 ~~~~~~~~~~~~G~~lg~~~~~~  176 (490)
T PRK10642        154 FMGSWLDFGSIAGFVLGAGVVVL  176 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888766543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.44  E-value=0.023  Score=56.90  Aligned_cols=89  Identities=15%  Similarity=0.128  Sum_probs=65.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF  373 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~  373 (462)
                      -+.+|.++.+++.+..++....    ..      ......++++...+++|+|.....+.....+.+..|++.|+.++++
T Consensus        67 ~l~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  136 (394)
T TIGR00883        67 TLVITLLMMGIGTLLIGLLPSY----AT------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSF  136 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCh----hh------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHH
Confidence            3557777777777666553211    00      0001122355567899999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhhc
Q 012514          374 YLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       374 ~~l~~~~g~~lg~~l~~~~  392 (462)
                      +.....+|..+++.+...+
T Consensus       137 ~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883       137 QQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999998776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=96.38  E-value=0.24  Score=51.99  Aligned_cols=78  Identities=8%  Similarity=0.032  Sum_probs=53.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF  373 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~  373 (462)
                      -+.+|.++.+++.+..++..                  +.+.++...++.|+++.... .....+.+..|++.||..+|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~  163 (476)
T PLN00028        103 GSAFLLMLTAPAVFCMSLVS------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGI  163 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhc------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHH
Confidence            45566777776666554421                  23344456688899987654 455678899999999999999


Q ss_pred             HHHHHhHHHHHHHHHHh
Q 012514          374 YLSVIGAANFLSSFLIT  390 (462)
Q Consensus       374 ~~l~~~~g~~lg~~l~~  390 (462)
                      +.....+|..+++.+..
T Consensus       164 ~~~~~~~g~~~~~~~~~  180 (476)
T PLN00028        164 AAGWGNLGGGVTQLLMP  180 (476)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            98766666666655443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.35  E-value=0.018  Score=59.21  Aligned_cols=118  Identities=12%  Similarity=0.021  Sum_probs=77.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      .+.++..+.-.+..|+.+.+.++.-+|+++      ....+.+|.++.+++++.+.....        .    ......+
T Consensus        39 ~i~~~~~i~~~i~~p~~G~lsDr~~~r~Gr------rr~~i~~~~~~~~i~~~~~~~~~~--------~----~~~~~~~  100 (437)
T TIGR00792        39 TLFLVARILDAITDPIMGNIVDRTRTRWGK------FRPWLLIGAIPFSIVLVLLFTTPD--------F----SATGKLV  100 (437)
T ss_pred             HHHHHHHHHHHhccchheEeeecCCCCCCC------cchhHHHhHHHHHHHHHHHHhCCC--------C----CcchHHH
Confidence            345555566667777777665543222221      122356777777777666543210        0    0112356


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQV-PDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~a-P~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      |.+..+++.+++.-+..+.-.++..+.+ |++.|+...+.......+|..+++.+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~  157 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVL  157 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777888899999998888888888887 4688999999988888888877766544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.29  E-value=0.23  Score=51.93  Aligned_cols=84  Identities=13%  Similarity=0.190  Sum_probs=69.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF  373 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~  373 (462)
                      -+.+|+..-.++.++.++.+.                   -|+.-...+....-.+..|...+++.+++.++.+|..+++
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~-------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~  370 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATE-------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGI  370 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhcc-------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhH
Confidence            566889888888888887642                   1555556677777888999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhhccccc
Q 012514          374 YLSVIGAANFLSSFLITVVDHVT  396 (462)
Q Consensus       374 ~~l~~~~g~~lg~~l~~~~~~~~  396 (462)
                      .....++.+.+++.+.+.+...+
T Consensus       371 is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  371 ISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999999999999888665444

>TIGR00889 2A0110 nucleoside transporter

Probab=96.27  E-value=0.01  Score=61.17  Aligned_cols=86  Identities=16%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHhhhhhc------cchh
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWN-SGLCSGLLLGVTVVVYVQEH------VSWG   96 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY-~~iNiG~~i~~~~~~~l~~~------~g~~   96 (462)
                      .+.++++..+.+++.+...+....++.|.+++++      +.+++++++ ...++|..+||.++|++.++      +||+
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence            4556777888899999999999999999886432      368899997 56789999999999999887      4699


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 012514           97 AADVIITIVMAVSLLIFII  115 (462)
Q Consensus        97 ~~F~i~~i~~~~~~iifl~  115 (462)
                      ..|.++++..+++.+++..
T Consensus       382 ~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9998877776666654443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.20  E-value=1.9  Score=45.15  Aligned_cols=82  Identities=11%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHH--
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADV--  100 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~--  100 (462)
                      +...+.+..++.|+|.|..- .....+..-+++++      ++++.+++-.+.++|.++++.+++++. .+||+.-+-  
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln  185 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN  185 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence            46778888899999999998 88899999887432      368899999999999999999999954 578865444  


Q ss_pred             -HHHHHHHHHHHH
Q 012514          101 -IITIVMAVSLLI  112 (462)
Q Consensus       101 -i~~i~~~~~~ii  112 (462)
                       ++...+.+++++
T Consensus       186 ~Isl~s~~~a~~~  198 (511)
T TIGR00806       186 IISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHHHHHHHHH
Confidence             445555555554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.19  E-value=0.055  Score=56.59  Aligned_cols=116  Identities=11%  Similarity=0.187  Sum_probs=85.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      ..+-+..+.++.+++.+...+...                .+.+.++..-+++|++|....|.-.....+-+|++.|++.
T Consensus       102 ~r~v~~~~~~~sa~~t~l~P~aa~----------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~  165 (466)
T KOG2532|consen  102 ARRVFFISGLISALLTLLTPLAAS----------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTF  165 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH----------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHH
Confidence            455678888888888877776542                3444556677999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514          371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVAR  436 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~  436 (462)
                      .++.+....+|+.++..+.+..-.- .   .+|          ..-|.+.++++++..++++.+.+
T Consensus       166 ~ail~~g~q~g~v~~mp~sg~lc~s-~---~GW----------~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  166 IAILTAGSQLGTIITMPVSGLLCES-S---LGW----------PSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhcc-C---CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999988888886665533211 0   034          22356677777766666655554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.14  E-value=0.085  Score=54.89  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=96.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+..++.-.+..|+++++=    +|. +     +..+-+..|.+++++|-++...++..     .        +-+.
T Consensus        74 G~viaa~slg~~i~~liF~~Ws----~k~-~-----~~k~Pli~s~ii~~~g~llY~~l~~~-----~--------~~~~  130 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWS----NKT-G-----SVKKPLIVSFLIAIIGNLLYLALAYV-----P--------NGVK  130 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccc----ccc-C-----CcccCHHHHHHHHHHHHHHHHHHHhc-----c--------cchH
Confidence            4566778889999999998732    221 1     23455789999999999888666642     1        1167


Q ss_pred             hhHHHHHHHHHHH-HHHHhhHHHHHHhhhcCchhhhHHHHHH--HHHHhHHHHHHHHHHhhcccccccCCCcccc-CCCc
Q 012514          334 FWLAPQSIISGVA-DGFALVGLQEYFYDQVPDSMRSLGIAFY--LSVIGAANFLSSFLITVVDHVTDKSGRSWFG-KDMN  409 (462)
Q Consensus       334 ~wli~~~~l~~~g-El~~~p~~~~~~~~~aP~~~~g~~~g~~--~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~-~~~n  409 (462)
                      |++...+++.|+| -.+..--.+.-..+-.+++.|.++....  -+...+|..++..+..+-+.     |-.|++ -.+|
T Consensus       131 y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~-----G~~i~~~~~~n  205 (488)
T KOG2325|consen  131 YLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK-----GFMILPGLIFN  205 (488)
T ss_pred             HHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC-----ceEEcCcceEE
Confidence            8888999999999 5555556666666667777776665554  45556666666555443221     113555 2344


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514          410 SSRLDKFYWLLAALVAANLFVYVVVARRYSY  440 (462)
Q Consensus       410 ~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~  440 (462)
                      .-....  |+.+++.++..++..+..|.-.+
T Consensus       206 ~YTap~--w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  206 MYTAPA--WLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             ecchHH--HHHHHHHHHHHHHHHhheeeccc
Confidence            322222  55666666666666665555443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.09  E-value=0.16  Score=55.37  Aligned_cols=92  Identities=15%  Similarity=0.127  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc----------
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH----------   92 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~----------   92 (462)
                      -+.++++|.++.++|.--+.|--.+++=|-..++      +...++.+.|..--+|.++|.+++++.-+-          
T Consensus       236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~  309 (735)
T KOG3626|consen  236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG  309 (735)
T ss_pred             hHHHHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence            3558888899999998776665555554443332      235789999999999999999999986431          


Q ss_pred             ---------cchhhHHHHHHHHHHHHHHHHHHcccce
Q 012514           93 ---------VSWGAADVIITIVMAVSLLIFIIGRPFY  120 (462)
Q Consensus        93 ---------~g~~~~F~i~~i~~~~~~iifl~~~~~~  120 (462)
                               -.|+++|++++..++++.+.+++.-|.+
T Consensus       310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence                     2599999999999998888777654443

>TIGR00896 CynX cyanate transporter

Probab=96.01  E-value=0.19  Score=50.20  Aligned_cols=107  Identities=12%  Similarity=0.097  Sum_probs=74.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      ++..+++.+...+..|+..++.++..+|           +.+.+|.++.+++.+.. ..                  .+.
T Consensus        38 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~-~~------------------~~~   87 (355)
T TIGR00896        38 GLLTALPVLCFAVLAPLAPWLARRFGEE-----------RSVAAGLLLIAAGILIR-SA------------------PGT   87 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCch-----------HHHHHHHHHHHHHHHHH-Hh------------------ccH
Confidence            4566777778888888888765433222           23556766666555443 11                  123


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++++...++.++|.....+.....+.+..| +.|+.++|++.....+|..+++.+...
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~  144 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVP  144 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556688899999888888888888887 479999999999989999888776653

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15011 sugar efflux transporter B; Provisional

Probab=95.84  E-value=0.2  Score=50.94  Aligned_cols=60  Identities=12%  Similarity=0.015  Sum_probs=40.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhh--hHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMR--SLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~--g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      .+++.....+.+..+....|...+.+.+..|++-|  +.+.++.....++|..+|+.+.+.+
T Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l  166 (393)
T PRK15011        105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            33333333444555556788888888887776544  4566788888888888888777644

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=95.84  E-value=2.6  Score=43.10  Aligned_cols=88  Identities=23%  Similarity=0.420  Sum_probs=64.9

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      ..+-+-+|+++..+..+...+.+.               +.. +|..  -.+.++..-=+....=++..+.+|++..+..
T Consensus       317 ~k~vl~~~lvi~~~~~~~~~~~~~---------------~~~-f~i~--gll~g~s~G~~qA~SRSy~~~lvp~~k~~~f  378 (438)
T COG2270         317 SKPVLMIGLVILSIAALYLIFLEG---------------ELD-FWIL--GLLVGTSLGGAQASSRSYLARLVPKGKEGRF  378 (438)
T ss_pred             CceeehHHHHHHHHHHHHHHHccc---------------cHH-HHHH--HHHHHHhcchHHHHHHHHHHHhCCCccccce
Confidence            335566778777777766655432               222 2332  1455666666677778899999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhccccc
Q 012514          371 IAFYLSVIGAANFLSSFLITVVDHVT  396 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~~~~~~  396 (462)
                      .|++.++.-.++.+|+.+++.+...+
T Consensus       379 Fglyaltgra~S~~gp~lv~v~t~iT  404 (438)
T COG2270         379 FGLYALTGRAASFLGPFLVAVITQIT  404 (438)
T ss_pred             eehhhhhhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999776554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=3  Score=43.36  Aligned_cols=163  Identities=11%  Similarity=0.092  Sum_probs=93.7

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      --+.+++.+.+-+..-+-+-.+.++.+|.++    +....-+.+|.++.-++++..-+.-....+..+.......-.-+.
T Consensus       278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~  353 (461)
T KOG3098|consen  278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSY  353 (461)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccch
Confidence            3455666666666666655555555555332    234445666666666555543321111110000000000001112


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL  413 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l  413 (462)
                      ..-...++++|+|+.+....-+..+....| +-|..+-++.-+..++++.++-.... .+                  .+
T Consensus       354 ~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~-~~------------------~l  413 (461)
T KOG3098|consen  354 YLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP-YL------------------LL  413 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh-hh------------------HH
Confidence            222335589999999999999999999994 55667778888888888877643321 00                  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514          414 DKFYWLLAALVAANLFVYVVVARRYSY  440 (462)
Q Consensus       414 ~~~f~~la~l~~~~~v~~~~~~~~~~~  440 (462)
                      ..+...+.+...+..++++.++++++.
T Consensus       414 ~~~~l~~~i~~~i~~~~~~~~~~~~~~  440 (461)
T KOG3098|consen  414 YIYTLGLPIFCVIATTIFFIVAERTQA  440 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677888888888888888853

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=95.73  E-value=0.15  Score=52.52  Aligned_cols=88  Identities=9%  Similarity=0.071  Sum_probs=64.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHH
Q 012514          293 QRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIA  372 (462)
Q Consensus       293 ~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g  372 (462)
                      +-+.+++++.+++.+..++...+    . .     ....+..+++..-+++|+||....|....++.+..|++.||.+++
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~----~-~-----~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~  163 (432)
T PRK10406         94 KSMLISVCMMCFGSLVIACLPGY----E-T-----IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYAS  163 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCc----h-h-----HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHH
Confidence            35667888887777766553211    0 0     001123456667789999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHh
Q 012514          373 FYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       373 ~~~l~~~~g~~lg~~l~~  390 (462)
                      ++......|..++..+..
T Consensus       164 ~~~~~~~~G~~~~~~~~~  181 (432)
T PRK10406        164 FQYVTLIGGQLLALLVVV  181 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            998888888888766544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.69  E-value=0.17  Score=51.34  Aligned_cols=117  Identities=9%  Similarity=0.165  Sum_probs=89.0

Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 012514          289 IQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRS  368 (462)
Q Consensus       289 ~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g  368 (462)
                      .+|.+=|++|++++++..+..++.+                  |.+.++..+++.++-+-.-.|.....+++--|++.||
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs~------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG  152 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFSP------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG  152 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhhh------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC
Confidence            3677788999999999999988742                  5566677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514          369 LGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVAR  436 (462)
Q Consensus       369 ~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~  436 (462)
                      ...++|..+..+|..+.+.++.+ .....+.  +|          ..-|+.=++++++.+++.+..-|
T Consensus       153 ~~~siWn~shNiGGal~~~~~~l-a~~~~~~--~w----------~~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         153 TWWSIWNTSHNIGGALAPLVALL-AFFAFHG--GW----------RAAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             ceEEEehhhhhcccchHHHHHHH-HHHHhcc--ch----------hHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999888732 1111110  12          12255566666666666555544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.66  E-value=0.46  Score=48.06  Aligned_cols=86  Identities=13%  Similarity=0.054  Sum_probs=60.8

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhH
Q 012514          290 QILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSL  369 (462)
Q Consensus       290 s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~  369 (462)
                      +..+-+.+|+.+.+++..+..=...               .-+....+...++++.|--+.-.+++.++..+.|++..+.
T Consensus        76 gyk~gi~lgL~l~avg~~lF~pAa~---------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~  140 (422)
T COG0738          76 GYKAGIVLGLLLYAVGAALFWPAAS---------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF  140 (422)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhh---------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH
Confidence            5566788999999998876642211               1223344556688999999999999999999999976666


Q ss_pred             HHHHHHHHHhHHHHHHHHHHh
Q 012514          370 GIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       370 ~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      =+.+--...++|..+++.+++
T Consensus       141 rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738         141 RLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             HHHHHHHhhhhHHHHHHHHHH
Confidence            555555555666666655554

>TIGR01272 gluP glucose/galactose transporter

Probab=95.66  E-value=0.069  Score=52.73  Aligned_cols=62  Identities=6%  Similarity=-0.069  Sum_probs=56.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514          332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD  393 (462)
Q Consensus       332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~  393 (462)
                      +..+.+..+++.+.|-.+..++.+.++....|++.++..+++-....++|..+|+.+++.+-
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            46677889999999999999999999999999999999999999999999999999988543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.66  E-value=0.18  Score=53.19  Aligned_cols=115  Identities=12%  Similarity=0.124  Sum_probs=72.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCch--hhhHHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDS--MRSLGI  371 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~--~~g~~~  371 (462)
                      -+.+|.++.+++.+.++..+                 .+..++.....+..+|..+..|...+++.++-|++  .|+...
T Consensus        78 ~iliG~il~~lg~lll~~~~-----------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf  140 (493)
T PRK15462         78 AVMLGALLMAIGHVVLGASE-----------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGF  140 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-----------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccccee
Confidence            35688888888876554211                 01112223344556676677777778899998875  788899


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514          372 AFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSY  440 (462)
Q Consensus       372 g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~  440 (462)
                      ++++....+|..+++.+.+.+.            ++.+   ...-|.+.++.+++..+.++...|++.+
T Consensus       141 ~i~Y~~~nlG~~iap~l~g~L~------------~~~G---w~~~F~iaaigm~l~li~~~~~~~~l~~  194 (493)
T PRK15462        141 SLMYAAGNVGSIIAPIACGYAQ------------EEYS---WAMGFGLAAVGMIAGLVIFLCGNRHFTH  194 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH------------hhhC---hHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            9999888899999988877443            1121   1233555555566666666655555543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.61  E-value=1.4  Score=46.09  Aligned_cols=85  Identities=9%  Similarity=0.076  Sum_probs=58.9

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      +.+-+.++.++.++..+..++...        +     ...|.+.++...++.|++ ....+.++..+.+..|++.||++
T Consensus        99 ~R~v~~~~~ll~~i~~~~~~~a~~--------~-----~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A  164 (462)
T PRK15034         99 GRRWTVFSTAILIIPCVWLGIAVQ--------N-----PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSA  164 (462)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHc--------c-----cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHH
Confidence            444566777777777776665310        0     013566667788999998 55788899999999999999999


Q ss_pred             HHHHH----HHHhHHHHHHHHHH
Q 012514          371 IAFYL----SVIGAANFLSSFLI  389 (462)
Q Consensus       371 ~g~~~----l~~~~g~~lg~~l~  389 (462)
                      +|++.    +...++..+.+.++
T Consensus       165 ~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        165 LGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Confidence            99995    44444445554433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.23  E-value=0.12  Score=52.19  Aligned_cols=125  Identities=14%  Similarity=0.103  Sum_probs=83.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh---hhHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSM---RSLG  370 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~---~g~~  370 (462)
                      -+.+|.++..+|.+++.+.....   ..      ....+...+.....++++|....-|....+..+|-+++.   |...
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~---~~------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~   73 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPP---SL------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSF   73 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSS---SC------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcc---hh------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhh
Confidence            35688888888888866654210   00      012334455667889999999999999999999999874   3344


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 012514          371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKN  442 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~  442 (462)
                      -..++....+|..++..+...+.            ++.+   ....|++.++.++++.++|+...++|+++.
T Consensus        74 F~~fY~~in~G~~~~~~~~~~i~------------~~~~---~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~  130 (372)
T PF00854_consen   74 FNWFYWGINIGSLFSPTLVPYIQ------------QNYG---WFLGFGIPAIGMLLALIVFLSGRKRYRKVA  130 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHH------------HCS----HHHHHHHHHHHHHHHHHHHHCCCCTT--S-
T ss_pred             HHHHHHHHhhhhHhhcccchhhc------------cccc---hhhhhhHHHHHHHHHHHHHHhCCcCCcCcC
Confidence            55677888999988866554332            2221   245678888889999999999988988873

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.11  E-value=0.25  Score=50.19  Aligned_cols=114  Identities=8%  Similarity=-0.061  Sum_probs=61.7

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +...++..+...+..|+..++-++..||+           .+..+.+..++++.........     .      ....+.
T Consensus        41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr~-----------~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~   98 (396)
T TIGR00882        41 GIVFSCISLFSILFQPLFGLISDKLGLKK-----------HLLWIISGLLVLFAPFFIYVFG-----P------LLQSNI   98 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHHHhh-----h------HHHHHH
Confidence            45667778888888899888776654442           2223333333322211111000     0      000112


Q ss_pred             hh-HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          334 FW-LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       334 ~w-li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++ .+...++.+++.....|...+++.+..+++  +...|......++|..+|+.+.+.
T Consensus        99 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~  155 (396)
T TIGR00882        99 LVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGI  155 (396)
T ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhh
Confidence            22 334557778888888888888877765543  344455555556666666666553

>PRK15075 citrate-proton symporter; Provisional

Probab=95.08  E-value=1  Score=46.41  Aligned_cols=85  Identities=11%  Similarity=0.173  Sum_probs=59.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc---hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS---VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s---~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      -+.++.++.+++.+..++...+             ....   ..+++..-++.++|+....|....++.+..|++.|+.+
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~  154 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGY-------------ATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFY  154 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcH-------------HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHH
Confidence            4567777777777766653211             0000   11234455889999999999889999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHhh
Q 012514          371 IAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++++.....+|..+++.+...
T Consensus       155 ~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075        155 TSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999887777766666555443

>PRK09952 shikimate transporter; Provisional

Probab=94.86  E-value=0.4  Score=49.67  Aligned_cols=107  Identities=12%  Similarity=0.013  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHH
Q 012514          268 VTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVAD  347 (462)
Q Consensus       268 ~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gE  347 (462)
                      .|+-..+.-++.+|++       ..+-+.+++++.+++.+..++...+    . .-+     -.+.+.++..-+++|+|+
T Consensus        77 ~~~g~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~----~-~~~-----~~~~~~l~~~R~l~G~~~  139 (438)
T PRK09952         77 RPLGGVVFGHFGDRLG-------RKRMLMLTVWMMGIATALIGLLPSF----S-TIG-----WWAPVLLVTLRAIQGFAV  139 (438)
T ss_pred             HhhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHhcCCcH----H-HHH-----HHHHHHHHHHHHHHHhhh
Confidence            3444444444445542       3345567777777777766653211    0 000     001123555668899999


Q ss_pred             HHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          348 GFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       348 l~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ....|....++.+..|++.||.+++......++|..++..+...
T Consensus       140 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~  183 (438)
T PRK09952        140 GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL  183 (438)
T ss_pred             cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888766553

>PRK11462 putative transporter; Provisional

Probab=94.85  E-value=0.22  Score=52.11  Aligned_cols=85  Identities=13%  Similarity=-0.007  Sum_probs=63.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcC-chhhhHHHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVP-DSMRSLGIA  372 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP-~~~~g~~~g  372 (462)
                      .+.+|.+..+++++.+....        +.    +...-..|....|+++.++--+....-.++...+++ ++.|+..++
T Consensus        82 ~il~g~i~~~i~~~llf~~p--------~~----s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s  149 (460)
T PRK11462         82 WVLFGALPFGIVCVLAYSTP--------DL----SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQS  149 (460)
T ss_pred             hHhHHHHHHHHHHHHHHhCC--------CC----CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHH
Confidence            45577777777776554321        00    011225678889999999999999999999999999 779999999


Q ss_pred             HHHHHHhHHHHHHHHHHh
Q 012514          373 FYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       373 ~~~l~~~~g~~lg~~l~~  390 (462)
                      .-.....+|..+++.+..
T Consensus       150 ~r~~~~~iG~~~~~~~~~  167 (460)
T PRK11462        150 WRFVLATAGGMLSTVLMM  167 (460)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            988888888877766644

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=94.77  E-value=0.64  Score=49.26  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=85.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.+...+...+..++..++-+.+.||.           -+.++.++..++.++.++.                  .++
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a------------------~~~  142 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALA------------------PSW  142 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHh------------------hhH
Confidence            57777777888888888888766665552           3567777777777777653                  256


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHH
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLS  385 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg  385 (462)
                      .+++..-++.|+|--+.+....-++...+|++.||.+.++..+...+|..++
T Consensus       143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~  194 (513)
T KOG0254|consen  143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG  194 (513)
T ss_pred             HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH
Confidence            7888899999999999999999999999999999999999999999999888

>PTZ00207 hypothetical protein; Provisional

Probab=94.63  E-value=8  Score=41.80  Aligned_cols=76  Identities=11%  Similarity=-0.001  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHhhhhhccchhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLL-LGVTVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~-i~~~~~~~l~~~~g~~~~F~i  101 (462)
                      +.+.+++...+.++|.|.+.+.......+.|+++       +..+.++.....++|+. ++++..+++.+  +|+..|++
T Consensus       119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~-------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~  189 (591)
T PTZ00207        119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSN-------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFF  189 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH
Confidence            5788888999999999999888888889988521       26789999999999986 46666666654  45555554


Q ss_pred             HHHHHH
Q 012514          102 ITIVMA  107 (462)
Q Consensus       102 ~~i~~~  107 (462)
                      .++..+
T Consensus       190 l~vl~~  195 (591)
T PTZ00207        190 LMSFAL  195 (591)
T ss_pred             HHHHHH
Confidence            433333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=94.34  E-value=0.67  Score=46.86  Aligned_cols=59  Identities=10%  Similarity=-0.141  Sum_probs=43.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +.++++..+++++.+.-...|...+.+.+  +++.|+...|......++|..+++.+.+.+
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l  151 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGL  151 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            35556667777888877777887777654  356778888888888888888888776643

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=94.26  E-value=1.7  Score=46.79  Aligned_cols=120  Identities=19%  Similarity=0.226  Sum_probs=77.4

Q ss_pred             HhccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514          240 TMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGV  319 (462)
Q Consensus       240 ~~~~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~  319 (462)
                      +++.++| +- -...|+...+.+...+..|+++++-+-+.||.           -+.+|.++..+|.++.+-.       
T Consensus        69 ~I~~diG-~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA-------  128 (599)
T PF06609_consen   69 YINADIG-GS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATA-------  128 (599)
T ss_pred             HHHHhcC-CC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcC-------
Confidence            3444555 31 12247778888888888899988776665553           3557778888888776532       


Q ss_pred             cccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          320 VEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       320 ~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                               .+++  -++...++.++|-...... ...+.+..|.+-|+...++.....-+....|+.+...
T Consensus       129 ---------~~~~--~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~  188 (599)
T PF06609_consen  129 ---------QNMN--TFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL  188 (599)
T ss_pred             ---------CcHH--HHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence                     1233  3355678888886666544 4457899999999887776665555544455555543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=94.21  E-value=0.18  Score=53.05  Aligned_cols=87  Identities=13%  Similarity=0.209  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-hhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-WGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i  101 (462)
                      +.+.+++.-+++++..|...+...++.+++.|+++.      ..+|++|...--..+++||++.+.+.+..| .+++|..
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e------~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~  452 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE------AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF  452 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            456678877899999999999999999999987542      579999999999999999999999988765 7889888


Q ss_pred             HHHHHHHHHHHHHH
Q 012514          102 ITIVMAVSLLIFII  115 (462)
Q Consensus       102 ~~i~~~~~~iifl~  115 (462)
                      -.+.++++++++..
T Consensus       453 l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  453 LLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHhh
Confidence            77888888876643

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=94.17  E-value=0.17  Score=50.83  Aligned_cols=103  Identities=15%  Similarity=0.182  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHH
Q 012514          262 VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSI  341 (462)
Q Consensus       262 l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~  341 (462)
                      +.=.+-.|+.+.+=    .+++++|       -+.+|.+..+++.+..+...                  +...++.+-+
T Consensus        79 ilQ~~sS~~~G~~S----D~yGRkp-------vll~c~~~va~s~ll~~~S~------------------~F~afv~aR~  129 (451)
T KOG2615|consen   79 ILQFISSPLWGCLS----DRYGRKP-------VLLACLIGVALSYLLWALSR------------------NFAAFVLARF  129 (451)
T ss_pred             HHHHHhhhhhhhhh----hhhCchH-------HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence            33445556666543    3444332       35577777777766665432                  2223344456


Q ss_pred             HHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhccc
Q 012514          342 ISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDH  394 (462)
Q Consensus       342 l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~  394 (462)
                      +.|+.--.+++ .-+.+.+.++++.|+..|+....+.++|-.+|+++.+....
T Consensus       130 l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  130 LGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            66766666654 35889999999999999999999999999999988876653

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.08  E-value=1.4  Score=38.82  Aligned_cols=60  Identities=8%  Similarity=0.237  Sum_probs=52.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      .+.++|.-++.|+|+.+.+...-.++.+.+.++.+++..|+++.....+..+|+++...+
T Consensus        89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889999999999999999999999999999999999988888888887765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK09669 putative symporter YagG; Provisional

Probab=93.66  E-value=0.29  Score=50.74  Aligned_cols=114  Identities=5%  Similarity=-0.105  Sum_probs=67.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514          258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA  337 (462)
Q Consensus       258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli  337 (462)
                      .+.-++-.+..|+.+.+.++.-.|.++      ...-+..|.+..+++++.+...        .+.    ......+|..
T Consensus        52 ~i~~i~dai~dp~~G~lsD~~~~r~Gr------rrp~il~~~~~~~i~~~l~f~~--------p~~----~~~~~~~~~~  113 (444)
T PRK09669         52 LVVRVLDAVTDPLMGALVDRTRTRHGQ------FRPYLLWFAIPFGVVCLLTFYT--------PDF----GATGKIIYAC  113 (444)
T ss_pred             HHHHHHHHcccceeeEeeecCCCCCCC------cchhHHHHHHHHHHHHHHHHhC--------CCC----CcchHHHHHH
Confidence            333444445556655554433222221      1224556777777766544321        000    0123456777


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhHHHHHHHHHHhHHHHHHHHHH
Q 012514          338 PQSIISGVADGFALVGLQEYFYDQV-PDSMRSLGIAFYLSVIGAANFLSSFLI  389 (462)
Q Consensus       338 ~~~~l~~~gEl~~~p~~~~~~~~~a-P~~~~g~~~g~~~l~~~~g~~lg~~l~  389 (462)
                      ..|++.+++--+..++-.++....+ +++.|+..++.-.....+|..+++.+.
T Consensus       114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~  166 (444)
T PRK09669        114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA  166 (444)
T ss_pred             HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888777778877788888887 446788888877777777777776544

>PRK09528 lacY galactoside permease; Reviewed

Probab=93.46  E-value=0.12  Score=52.91  Aligned_cols=85  Identities=9%  Similarity=0.039  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNW-WNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~-fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      .+.++....+.+++.+...+....++.+.++++.      +...+.. +....++|..+++.+.|++.+..||+..|.+.
T Consensus       315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~  388 (420)
T PRK09528        315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL  388 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence            5556666777788887777777778788776432      1334434 55678899999999999999999999999987


Q ss_pred             HHHHHHHHHHHH
Q 012514          103 TIVMAVSLLIFI  114 (462)
Q Consensus       103 ~i~~~~~~iifl  114 (462)
                      ++..++..++.+
T Consensus       389 ~~~~~i~~~~~~  400 (420)
T PRK09528        389 GGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHH
Confidence            776666554443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=93.43  E-value=0.88  Score=47.51  Aligned_cols=56  Identities=11%  Similarity=0.068  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhccc
Q 012514          339 QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDH  394 (462)
Q Consensus       339 ~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~  394 (462)
                      .-++.|++--+++....+..+++.-+..+|.++|++....+++..+|+++.+....
T Consensus       394 ~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~  449 (488)
T KOG2325|consen  394 FIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT  449 (488)
T ss_pred             hhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence            34678888889999999999999999999999999999999999999988775553

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=93.34  E-value=0.98  Score=45.62  Aligned_cols=58  Identities=10%  Similarity=-0.204  Sum_probs=34.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      +.|.++...++.+++.....|...+.+.+..+  .|+..+|......++|..+|+.+.+.
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~  150 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGK  150 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHH
Confidence            34545556677888888788877666665533  34454444454455666666555553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=93.28  E-value=1.4  Score=44.53  Aligned_cols=86  Identities=12%  Similarity=0.044  Sum_probs=56.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccch
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSR  412 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~  412 (462)
                      .+|++....+.++......+....++.+..+++.++.+.+.......+|..+|+.+...+.            +..+.  
T Consensus        97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~------------~~~gw--  162 (390)
T TIGR02718        97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF------------GKFGQ--  162 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCH--
Confidence            3455545555666677777777778888888888898888888888889998886554322            11111  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHh
Q 012514          413 LDKFYWLLAALVAANLFVYVV  433 (462)
Q Consensus       413 l~~~f~~la~l~~~~~v~~~~  433 (462)
                       ..-|++.+++.++..+..+.
T Consensus       163 -~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       163 -RPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH
Confidence             22466677766665555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=93.00  E-value=1.2  Score=42.57  Aligned_cols=121  Identities=16%  Similarity=0.178  Sum_probs=78.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      |..-..+|.++..+|+......-..+           ....+.|.+.....+.+.|........+.-..+.-|+ .||.+
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~~~-----------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~v  132 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVSGR-----------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTV  132 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCc-----------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCce
Confidence            55566788888888887766543211           1123444444455677788888777777777788896 69999


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514          371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYS  439 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~  439 (462)
                      .|+---..+++..+=+.+...           .+++     +.+.|..+++....+..++.....|...
T Consensus       133 vgilk~~~GLSaai~t~i~~~-----------~f~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  133 VGILKGFFGLSAAIFTQIYSA-----------FFGD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             ehhhhHHHHhHHHHHHHHHHH-----------HcCC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            999998888888765544332           2222     2245677777766666555555555554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=92.89  E-value=0.00012  Score=75.97  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh---ccchhhHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE---HVSWGAAD   99 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~---~~g~~~~F   99 (462)
                      +...+.++..+.++|.|+.-+....++.+..+++.      |.....+...+.++|.+++.++...+.+   +.+|+..+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence            57889999999999999999999999998875543      2466777888888998888776654433   34599888


Q ss_pred             HHHHHHHHHHH
Q 012514          100 VIITIVMAVSL  110 (462)
Q Consensus       100 ~i~~i~~~~~~  110 (462)
                      .++++..++.+
T Consensus       175 ~~~~~~~l~~~  185 (451)
T PF00083_consen  175 IFGAIPSLLVL  185 (451)
T ss_pred             ccccccccccc
Confidence            87766655443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10429 melibiose:sodium symporter; Provisional

Probab=92.39  E-value=1.3  Score=46.39  Aligned_cols=115  Identities=11%  Similarity=0.021  Sum_probs=70.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514          256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW  335 (462)
Q Consensus       256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w  335 (462)
                      +..+..++-.+..|+.+.+-++.-.|+++      ...-+.+|.+..++++..+...        .+.    ......+|
T Consensus        47 i~~i~ri~dai~dp~~G~lsD~t~sr~Gr------rrp~il~g~i~~~i~~~llf~~--------p~~----~~~~~~~~  108 (473)
T PRK10429         47 LFLVARIWDAINDPIMGWIVNNTRSRWGK------FKPWILIGTLANSVVLFLLFSA--------HLF----EGTAQYVF  108 (473)
T ss_pred             HHHHHHHHHHHhhchheeehhcCCCCCCC------cchhHhhhhHHHHHHHHHHHcC--------CCC----CccHHHHH
Confidence            34444455555556665555432122221      1223557777777776555321        000    01123567


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhHHHHHHHHHHhHHHHHHHHH
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQV-PDSMRSLGIAFYLSVIGAANFLSSFL  388 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~a-P~~~~g~~~g~~~l~~~~g~~lg~~l  388 (462)
                      .+..|++..++--+..+.-.++..+++ +++.|+...+.-.....+|..+.+.+
T Consensus       109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429        109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999 58899988887555556665555443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=92.22  E-value=0.21  Score=51.52  Aligned_cols=87  Identities=18%  Similarity=0.217  Sum_probs=64.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCc-hhhhHHHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPD-SMRSLGIA  372 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~-~~~g~~~g  372 (462)
                      -+.+|.++.++++..+......     .     ........|+...|++..++--+....-.++..+.+|+ +.|....+
T Consensus        74 ~~l~g~i~~~~~~~llf~~~p~-----~-----~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~  143 (428)
T PF13347_consen   74 WILIGAILLALSFFLLFSPPPA-----G-----LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSS  143 (428)
T ss_pred             EeehhhHHHHHHHHHhhccccc-----h-----hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHH
Confidence            4558888888888777643100     0     01123566878889999999999999999999999995 68999998


Q ss_pred             HHHHHHhHHHHHHHHHHh
Q 012514          373 FYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       373 ~~~l~~~~g~~lg~~l~~  390 (462)
                      .-.+...+|+.+.+.+..
T Consensus       144 ~~~~~~~~g~~l~~~~~~  161 (428)
T PF13347_consen  144 WRMIFSMIGSLLASFLAP  161 (428)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            888888888865555544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=92.03  E-value=3.5  Score=43.12  Aligned_cols=99  Identities=15%  Similarity=0.116  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHH
Q 012514          261 AVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQS  340 (462)
Q Consensus       261 ~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~  340 (462)
                      .+..++.+|.++.+-++..||        .++..-.+|.++-.+..++.                       .||.+. .
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~~-----------------------~~~~~~-~  119 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLFQ-----------------------GYWFFL-L  119 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHHH-----------------------HHHHhh-h
Confidence            567778888888877666655        23333334444444333321                       255543 1


Q ss_pred             HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      .=..-|-..+...+++++++.+.++.|....|+...+.+.+..+++.+.+.
T Consensus       120 ~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~  170 (463)
T KOG2816|consen  120 LGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY  170 (463)
T ss_pred             cccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            123345556677888999999999999999999999888888888777663

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.54  E-value=9.5  Score=37.22  Aligned_cols=88  Identities=13%  Similarity=0.261  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHH
Q 012514          339 QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW  418 (462)
Q Consensus       339 ~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~  418 (462)
                      ...++|++.-+..-..--.+..+.|++.-|.+-|....-+.+|-.+.+++++++.   .+++ ++       ..++.||.
T Consensus       358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~---d~~g-~y-------~~le~ffl  426 (459)
T KOG4686|consen  358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA---DGDG-SY-------DNLEAFFL  426 (459)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee---cCCC-ch-------hhHHHHHH
Confidence            5578888888888888888999999999999888888878777777777766443   1111 11       13567788


Q ss_pred             HHHHHHHHHHHHHHhhhhc
Q 012514          419 LLAALVAANLFVYVVVARR  437 (462)
Q Consensus       419 ~la~l~~~~~v~~~~~~~~  437 (462)
                      ....+++.+..+.+.+-|+
T Consensus       427 ~~~~~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  427 IIGLMALTSVGILFYLNKK  445 (459)
T ss_pred             HHHHHHHHHHHHHhheecc
Confidence            7777777777666655443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=90.85  E-value=1.3  Score=47.07  Aligned_cols=108  Identities=14%  Similarity=0.118  Sum_probs=81.0

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514          253 PASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS  332 (462)
Q Consensus       253 ~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s  332 (462)
                      .+|..++......+..|+...+.    +|++       -..-+.+|.+++++|++...+..                  +
T Consensus        83 ~~~i~sl~~~~~~~~gpl~s~l~----~rfg-------~R~v~i~G~~v~~~g~~lssF~~------------------~  133 (509)
T KOG2504|consen   83 IAWIGSLLLGVYLLAGPLVSALC----NRFG-------CRTVMIAGGLVAALGLLLSSFAT------------------S  133 (509)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHH----hhcC-------chHHHHHHHHHHHHHHHHHHHHh------------------h
Confidence            46777887777778888876644    4542       33456789999999999888753                  3


Q ss_pred             hhhHHHH-HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514          333 VFWLAPQ-SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT  390 (462)
Q Consensus       333 ~~wli~~-~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~  390 (462)
                      +|.++.. .++.|+|-.++.......+... .++.|++++|+-....++|..+=+.+.+
T Consensus       134 i~~l~lt~gvi~G~G~~~~~~paiviv~~Y-F~kkR~lA~Gia~~GsG~G~~~~~~l~~  191 (509)
T KOG2504|consen  134 LWQLYLTFGVIGGLGLGLIYLPAVVILGTY-FEKKRALATGIAVSGTGVGTVVFPPLLK  191 (509)
T ss_pred             HHHHHHHHHHHhhccchhhhcchhhhhhhH-hHHHHHHHHhhhhccCCcceeeHHHHHH
Confidence            4444444 4888999999998888888855 4578999999999999998877666655

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=90.48  E-value=7.5  Score=40.14  Aligned_cols=101  Identities=6%  Similarity=-0.067  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHH
Q 012514          336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDK  415 (462)
Q Consensus       336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~  415 (462)
                      +...-.+++..+.-..|++.|+.....=+...+...|+-.+   .|+..+..+....+ ...++.  +.+++.-+   .+
T Consensus       362 v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~---~gq~f~~~~~~~~~-~~~~~~--~~~~~~~~---~~  432 (480)
T KOG2563|consen  362 VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNL---SGQIFGVILVFIMG-ILAEDL--GPPGNTFP---AN  432 (480)
T ss_pred             hhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEe---ehhHHHHHHHHHHH-HHhhcc--CCCCCCcc---ch
Confidence            33344677888888999999999998888888887776443   33444333332222 111211  22211111   11


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 012514          416 FYWLLAALVAANLFVYVVVARRYSYKNVQRSV  447 (462)
Q Consensus       416 ~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~~  447 (462)
                        +.++..+++.+++-.+....|+|+++|++.
T Consensus       433 --i~~~~~~~l~~~lva~~r~~y~R~~~e~~~  462 (480)
T KOG2563|consen  433 --IFLTVSALLGAILVAFFRPDYRRLRAEAGN  462 (480)
T ss_pred             --hHhHHHHHHHHHHHhhhhhhHHhHhhhhcc
Confidence              335555566666677777888888777544

>PRK09848 glucuronide transporter; Provisional

Probab=89.81  E-value=3.3  Score=42.83  Aligned_cols=109  Identities=13%  Similarity=-0.044  Sum_probs=59.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      .+..+..+.-.+..|+.+++.++..+|+++      ...-+.+|.+..+++...+.....       .    .......+
T Consensus        48 ~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr------~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~  110 (448)
T PRK09848         48 TMLLLVRVFDAFADVFAGRVVDSVNTRWGK------FRPFLLFGTAPLMIFSVLVFWVPT-------D----WSHSSKVV  110 (448)
T ss_pred             HHHHHHHHHHHHhhhhheeeeecCCCCCcC------chHHHHHHHHHHHHHHHHHHhCcC-------C----CCcchHHH
Confidence            445555667777777777766544322221      111223454444433333221110       0    00112456


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCc-hhhhHHHHHHHHHHhH
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPD-SMRSLGIAFYLSVIGA  380 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~-~~~g~~~g~~~l~~~~  380 (462)
                      |....+++.+++.-+..+.-.+....++++ +.|+...+.-....++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~  157 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL  157 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            777788888999988888888877766655 4577766655443333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=89.13  E-value=1.3  Score=45.50  Aligned_cols=83  Identities=13%  Similarity=0.182  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHhhhhhccc------hhhHHH
Q 012514           28 FLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGL-CSGLLLGVTVVVYVQEHVS------WGAADV  100 (462)
Q Consensus        28 ~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~i-NiG~~i~~~~~~~l~~~~g------~~~~F~  100 (462)
                      .++..+.++..|.+-.....++.+..|++..      .++-+++.... -+|..+|.+++|++.|++|      |...|.
T Consensus       305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~------at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~  378 (400)
T PF03825_consen  305 LLGQLLHGLTFGLFHAASVRYIDRIAPPELR------ATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL  378 (400)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhCCccch------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            3444568999999999999999999876542      45666666654 4999999999999998765      445667


Q ss_pred             HHHHHHHHHHHHHHHc
Q 012514          101 IITIVMAVSLLIFIIG  116 (462)
Q Consensus       101 i~~i~~~~~~iifl~~  116 (462)
                      ++++..++..++|+..
T Consensus       379 v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  379 VFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            7777666666666654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=88.91  E-value=13  Score=39.01  Aligned_cols=58  Identities=19%  Similarity=0.141  Sum_probs=51.1

Q ss_pred             chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHH
Q 012514          332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLI  389 (462)
Q Consensus       332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~  389 (462)
                      +...++..-++.|+..-+......-++...||++.||.+-.+.-+...+|..+|..+.
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            3445667889999999999999999999999999999999999999999999986554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=88.02  E-value=17  Score=37.23  Aligned_cols=113  Identities=12%  Similarity=0.004  Sum_probs=67.5

Q ss_pred             CeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 012514          248 GFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKG  327 (462)
Q Consensus       248 g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~  327 (462)
                      ++.+.+++...+..+-++.-..+ .-.+..+..|+       .+.+...+++++..+-.+..++...             
T Consensus        43 ~~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~-------------  101 (417)
T COG2223          43 DFGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT-------------  101 (417)
T ss_pred             ccCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            34477777665555555443322 22223333443       3455666788888888887776542             


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHH
Q 012514          328 SLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLS  385 (462)
Q Consensus       328 ~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg  385 (462)
                        ..+.|+++..=++.|+|-. ....++..+...-||+.||.++|++- .-.+|..+.
T Consensus       102 --~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~  155 (417)
T COG2223         102 --YPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVA  155 (417)
T ss_pred             --CCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHH
Confidence              1233333333345555543 34567888999999999999999997 444444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=87.40  E-value=6.4  Score=40.80  Aligned_cols=83  Identities=19%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhc---CchhhhHH
Q 012514          294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQV---PDSMRSLG  370 (462)
Q Consensus       294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~a---P~~~~g~~  370 (462)
                      -|.+|.++.+++.+.++.....              ..+........++.++|..+.....-+.+.+.+   |++ +|..
T Consensus        61 Y~~i~~~~~~~~~~~~~~~~~~--------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~l  125 (433)
T PF03092_consen   61 YMIIGWLLGAVSALVLALLPAS--------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDL  125 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc--------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHH
Confidence            3567777776666655543210              112223334556778888888777776665555   555 8889


Q ss_pred             HHHHHHHHhHHHHHHHHHHhh
Q 012514          371 IAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       371 ~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++..+....+|+.++..+.+.
T Consensus       126 qS~~~~~~~~G~lv~~~l~G~  146 (433)
T PF03092_consen  126 QSFVWGVRSVGSLVGSLLSGP  146 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999998877664

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=85.43  E-value=9  Score=40.46  Aligned_cols=86  Identities=10%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCcc
Q 012514          331 MSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNS  410 (462)
Q Consensus       331 ~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~  410 (462)
                      -+.++.+..-++.|++..-....+...+.+..+++.|+.++.+ ....-.++.++..++..+..       +|       
T Consensus       169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------~W-------  233 (521)
T KOG0255|consen  169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------DW-------  233 (521)
T ss_pred             CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------hH-------
Confidence            3566677778999999999999999999999999999999999 55554555554444443220       13       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhh
Q 012514          411 SRLDKFYWLLAALVAANLFVYVVV  434 (462)
Q Consensus       411 ~~l~~~f~~la~l~~~~~v~~~~~  434 (462)
                         .++++..++.+++..+++++.
T Consensus       234 ---r~~~~~~~~~~~~~~~~~~l~  254 (521)
T KOG0255|consen  234 ---RWLFWIISIPSGLFLLLWFLP  254 (521)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHcc
Confidence               445666666666555553333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=83.69  E-value=18  Score=37.50  Aligned_cols=125  Identities=11%  Similarity=0.079  Sum_probs=67.1

Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 012514          289 IQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRS  368 (462)
Q Consensus       289 ~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g  368 (462)
                      ++...|+..++++..+.++.....-..       +   .+.....+..+..-++.+++..+...+.+.++...-|+    
T Consensus        72 i~~~~Ri~~~lv~~~~~~~~~~~l~~~-------~---~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~----  137 (437)
T TIGR00939        72 IPVTVRLLGGLVILLVVVILVMVLVKV-------Q---TSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST----  137 (437)
T ss_pred             cCccchhHHHHHHHHHHHHHHhheeee-------c---CCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH----
Confidence            366778888877666655554432110       0   01112233334455778899999999989888866553    


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 012514          369 LGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVA  435 (462)
Q Consensus       369 ~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~  435 (462)
                       +++.++..+++++.+++++ ..+.+....+.  .   +...+ -..||.+-+++.+++.+.|..+.
T Consensus       138 -~~~a~~~G~g~aGv~~s~~-~ii~~a~~~~~--~---~~~~~-a~~YF~~a~~v~l~~i~~~~~l~  196 (437)
T TIGR00939       138 -YSSAVMSGQGLAGVLTSLA-MILVKASGNDS--H---GLKKS-ALGYFGTPCVVQLICIVCYLLLP  196 (437)
T ss_pred             -HHHHHHhcchhHHHHHHHH-HHHHHHhcCCc--c---chhhh-hhhHHHHHHHHHHHHHHHHHHHh
Confidence             4445555566666666544 22222211110  0   12221 23455555666666766666553

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=83.57  E-value=62  Score=33.98  Aligned_cols=53  Identities=8%  Similarity=-0.024  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhhHHH----HHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514          341 IISGVADGFALVGLQ----EYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD  393 (462)
Q Consensus       341 ~l~~~gEl~~~p~~~----~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~  393 (462)
                      ++.-.+|+.-+....    .|+.++.-.+.-.+..+++.+...++..++|.+...+.
T Consensus       152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~  208 (509)
T COG3202         152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS  208 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            557788887776554    88888889999999999999999999999998876554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=82.89  E-value=0.31  Score=52.00  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=2.8

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc----------
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH----------   92 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~----------   92 (462)
                      -...+++|-++.++|..-+.+.-.+++=|-.++++      ..-+..++|....+|..+|.++++..-+.          
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~  213 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD  213 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence            36778888889999998877777776666544332      25688899999999999999998865321          


Q ss_pred             -----------c-chhhHHHHHHHHHHHHHHHHHHcccceee
Q 012514           93 -----------V-SWGAADVIITIVMAVSLLIFIIGRPFYRY  122 (462)
Q Consensus        93 -----------~-g~~~~F~i~~i~~~~~~iifl~~~~~~~~  122 (462)
                                 . .|+++|.++++..++..+-++..-|++++
T Consensus       214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~  255 (539)
T PF03137_consen  214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG  255 (539)
T ss_dssp             ------------------------------------------
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence                       2 49999999888888777766665555543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=81.43  E-value=2.9  Score=43.54  Aligned_cols=129  Identities=11%  Similarity=0.074  Sum_probs=89.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--hh
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSM--RS  368 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~--~g  368 (462)
                      ..+-+.+|-++.++|-++++..+.                .+...+....+++++|--+.-|...++..++=|++-  |-
T Consensus        91 ~~~tI~lGail~~iGh~~L~~~~~----------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD  154 (498)
T COG3104          91 TRRTIVLGAILMAIGHLVLAISSV----------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD  154 (498)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccc----------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC
Confidence            455688999999999999886320                123344557788889999999988888888777652  44


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 012514          369 LGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVA  448 (462)
Q Consensus       369 ~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~~~  448 (462)
                      ...++++....+|+++++.+...+.            ++.+   ...-|.+.++-+.+.+++|++..|+++..-..++..
T Consensus       155 ~gFt~fY~~iNiGsl~~p~i~~~~~------------~~~g---~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~  219 (498)
T COG3104         155 GGFTLFYMGINIGSLIAPIITGLLA------------INYG---WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPN  219 (498)
T ss_pred             CCccEEEEEeehHHHHHHHHHHHHH------------HhhC---HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCcc
Confidence            4567777888899999988876443            2222   122366677777888888888888887654444443


Q ss_pred             cc
Q 012514          449 VA  450 (462)
Q Consensus       449 ~~  450 (462)
                      +.
T Consensus       220 ~~  221 (498)
T COG3104         220 PL  221 (498)
T ss_pred             ch
Confidence            33

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=81.39  E-value=53  Score=33.19  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=64.6

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhH
Q 012514          290 QILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSL  369 (462)
Q Consensus       290 s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~  369 (462)
                      ++.+-+..++++.++|.++=..                   .+.+-++....+.+.|-...++...+++-+.-|++. +.
T Consensus        75 g~er~l~~~Llli~~G~~iR~~-------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~  134 (395)
T COG2807          75 GEERSLFLALLLIAAGILIRSL-------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GL  134 (395)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hh
Confidence            4566677777777766554211                   134456667789999999999999999999999876 68


Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhcc
Q 012514          370 GIAFYLSVIGAANFLSSFLITVVD  393 (462)
Q Consensus       370 ~~g~~~l~~~~g~~lg~~l~~~~~  393 (462)
                      +||+|..+.++|..+++.+.-.+.
T Consensus       135 mtglYs~sl~~~aaLaa~lavpla  158 (395)
T COG2807         135 MTGLYSTSLGAGAALAAALAVPLA  158 (395)
T ss_pred             HHhHHHHHHHHHHHHHhhhhhHHH
Confidence            999999999999999987765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	462
2xut_A	524	Proton/peptide symporter family protein; transport	1e-95
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	1e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  297 bits (762), Expect = 1e-95
 Identities = 76/432 (17%), Positives = 159/432 (36%), Gaps = 29/432 (6%)

Query: 26  VFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTV 85
            F+  ++LI++G+GG KP + SF  DQFD  +    +     F+ +   +  G       
Sbjct: 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ---KAFDMFYFTINFGSFFASLS 167

Query: 86  VVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRN 145
           +  + ++     A  I  ++M V+ + F +GR  Y +  P+       L V+ +A+  + 
Sbjct: 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227

Query: 146 LPHPSDPDQLFEYPKVVAKGRL--LCHTKNLEFLDKAAILEDYE----TPVDQQSPWRIA 199
               +    L     V A   L  +     +  L  A +L          +  +   +  
Sbjct: 228 EGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH 287

Query: 200 NVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGL 259
               V+ ++ VL ++ ++    PF     Q  + +I QA  M           PA +  L
Sbjct: 288 PDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMV----KPQWFEPAMMQAL 343

Query: 260 TAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGV 319
             + +++ + F   +L P + R       +  L+++G G+  +  + +    ++      
Sbjct: 344 NPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM--- 397

Query: 320 VEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIG 379
                  G  ++S+FW      +    +        E+ Y Q P +M+   ++F+   + 
Sbjct: 398 ------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT 451

Query: 380 AANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYS 439
             N         V   T           M+ +    F++  A        V+ + AR Y 
Sbjct: 452 VGNLWVLLANVSVKSPTVTEQ--IVQTGMSVTAFQMFFF--AGFAILAAIVFALYARSYQ 507

Query: 440 YKNVQRSVAVAD 451
            ++  R    ++
Sbjct: 508 MQDHYRQATGSE 519

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 12  HADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWW 71
           H  + L          F +I LI IGTG  KP++ +     +D+   + R+   + F+ +
Sbjct: 99  HIVLALPF---GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH--DRRRD--AGFSIF 151

Query: 72  NSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFY 120
             G+  G  +   +V   QE   +  A  +  I M + LL++  G    
Sbjct: 152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	462
2xut_A	524	Proton/peptide symporter family protein; transport	99.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.83
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.37
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.84
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.76
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.41
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.22
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.14
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.08
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.85
2xut_A	524	Proton/peptide symporter family protein; transport	97.73
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.72
2cfq_A	417	Lactose permease; transport, transport mechanism,	94.41

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.88  E-value=3.1e-22  Score=209.45  Aligned_cols=384  Identities=19%  Similarity=0.285  Sum_probs=232.4

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++.++.++|.|+..|+..+++.|.+++++..   ...+.|++++.+.|+|.++++.+++++.+..||++.|.+.
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~  184 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS---LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP  184 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT---HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            4678889999999999999999999999999875421   1256789999999999999999999999889999999999


Q ss_pred             HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccc----------
Q 012514          103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTK----------  172 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~----------  172 (462)
                      ++..+++.+.++..++...+++|++++.....+.+..+.+++....+ ....+............+.+..          
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (524)
T 2xut_A          185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCC  263 (524)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhh
Confidence            88888877776665554443334333322222222222222110000 0000000000000000000000          


Q ss_pred             ----------cchh--hhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHH
Q 012514          173 ----------NLEF--LDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAAT  240 (462)
Q Consensus       173 ----------~~~~--ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~  240 (462)
                                ...|  +|++.               +.+...+.+++|+.+..++++....+++..+.|..+.+..+...
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (524)
T 2xut_A          264 AMVLVMGFVGAGASLQLERAR---------------KSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND  328 (524)
T ss_dssp             HHHHHHHHHHTGGGTHHHHSC---------------CSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred             hhhhhhcccccchhhHHhhhh---------------ccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence                      0001  11100               01112234556666777788888888899899988888777666


Q ss_pred             hccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 012514          241 MNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVV  320 (462)
Q Consensus       241 ~~~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~  320 (462)
                      ++..   .+ ++.+.+..++++..++..|+.+++..|..+|++.+   .++.+++.+|+++.+++++.++..+..+.   
T Consensus       329 ~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---  398 (524)
T 2xut_A          329 MVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD---  398 (524)
T ss_dssp             SCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT---
T ss_pred             cCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            6532   22 36677888888999999999998877776664322   35667888999999988887665432100   


Q ss_pred             ccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCC
Q 012514          321 EENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSG  400 (462)
Q Consensus       321 ~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~  400 (462)
                            .....+.+|+++.+++.++|+.+..|...+++.+.+|+++||.++|++....++|+.+|+.+.+.+...+.   
T Consensus       399 ------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~---  469 (524)
T 2xut_A          399 ------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV---  469 (524)
T ss_dssp             ------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH---
T ss_pred             ------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence                  01235778888999999999999999999999999999999999999999999999999998875542210   


Q ss_pred             CccccC-CCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012514          401 RSWFGK-DMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQRS  446 (462)
Q Consensus       401 ~~w~~~-~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~  446 (462)
                      .+|.++ +.+..  .+.|++.+++++++.++++++.++++++++|+.
T Consensus       470 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (524)
T 2xut_A          470 TEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQDHYRQ  514 (524)
T ss_dssp             HHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC--------------
T ss_pred             cccccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence            023321 12211  223778888888888888888888876654433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.83  E-value=5.6e-19  Score=182.94  Aligned_cols=355  Identities=15%  Similarity=0.169  Sum_probs=230.2

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++.++.++|.|...|+..++++|.+++++.    .+..++++++.+.|+|..++|.+++++.++.||++.|.+.
T Consensus       107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~  182 (491)
T 4aps_A          107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA  182 (491)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            467788999999999999999999999999987652    2357899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcccceeec---CCCCC-CchhHHHHH---------------HHHHHhCCCCCCCCCCcccccccccc
Q 012514          103 TIVMAVSLLIFIIGRPFYRYR---VPKGS-PLTPMLQVL---------------VAAIAKRNLPHPSDPDQLFEYPKVVA  163 (462)
Q Consensus       103 ~i~~~~~~iifl~~~~~~~~~---~p~~~-~~~~~~~vl---------------~~a~~~~~~~~~~~~~~l~~~~~~~~  163 (462)
                      ++..+++++.++..++++.++   +|+.. ...+..+..               .....+ ....  + +.. .      
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~--~-~~~-~------  251 (491)
T 4aps_A          183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG-WNSL--P-AYI-N------  251 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS-SCCT--T-HHH-H------
T ss_pred             HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc-Cccc--c-cch-h------
Confidence            888888877665544433221   11111 111111100               001111 0000  0 000 0      


Q ss_pred             ccccccccccchhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHH-hc
Q 012514          164 KGRLLCHTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAAT-MN  242 (462)
Q Consensus       164 ~~~~l~~~~~~~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~~  242 (462)
                            ............... .        .|+. .....+++++..+..++++...+++..+.+..+.+..+..+ .+
T Consensus       252 ------~~~~~~~~~~~~~~~-~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (491)
T 4aps_A          252 ------LLTIVAIAIPVFYFA-W--------MISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVD  315 (491)
T ss_dssp             ------HHHHHHHHHHHHHHH-H--------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCC
T ss_pred             ------hhhHHHHHHHHHHHH-H--------Hhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence                  000000000000000 0        0000 01122456666677888888899999999888877766543 22


Q ss_pred             cCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514          243 REIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEE  322 (462)
Q Consensus       243 ~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~  322 (462)
                      .+    . .+.+.+..++++..++..++.+++..++.+|      ......++.+|+++.+++++.++......    . 
T Consensus       316 ~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  379 (491)
T 4aps_A          316 SS----W-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN------QPSSPTKFAVGLMFAGLSFLLMAIPGALY----G-  379 (491)
T ss_dssp             CS----S-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC----C-
T ss_pred             cC----c-cCHHHHhccchHHHHHHHHHHHHHHHHHhcc------CCCchHHHHHHHHHHHHHHHHHHHHHHhc----C-
Confidence            22    1 4567888999999999999998876555433      12467788899999999998887765321    0 


Q ss_pred             CCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCc
Q 012514          323 NPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRS  402 (462)
Q Consensus       323 ~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~  402 (462)
                          ...+.+.+|+++.+++.++|+.+..|...+++.+..|++.||.++|++.....+|..+++.+...+...       
T Consensus       380 ----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-------  448 (491)
T 4aps_A          380 ----TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-------  448 (491)
T ss_dssp             ----CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-------
T ss_pred             ----CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence                112457788889999999999999999999999999999999999999999999999998886644311       


Q ss_pred             cccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 012514          403 WFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQ  444 (462)
Q Consensus       403 w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~  444 (462)
                               .....|+.+++++++..++.+...++.+++.+|
T Consensus       449 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (491)
T 4aps_A          449 ---------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQG  481 (491)
T ss_dssp             ---------STTHHHHHTHHHHHHHHHHHHHC----------
T ss_pred             ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     123457778888888888888887777665443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.37  E-value=2.2e-11  Score=123.80  Aligned_cols=313  Identities=9%  Similarity=-0.013  Sum_probs=175.1

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-hhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-WGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i  101 (462)
                      +.+.++++.++.++|.|...|...+++.|.+++++      +.++++++..+.++|.++++.+++++.+..| |++.|.+
T Consensus       118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~  191 (451)
T 1pw4_A          118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  191 (451)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            46678889999999999999999999999997542      2578999999999999999999999888888 9999999


Q ss_pred             HHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhh
Q 012514          102 ITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAA  181 (462)
Q Consensus       102 ~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~  181 (462)
                      .++..++..++.+...+.    +|+....               .+..+.... .+.+          ..      +.. 
T Consensus       192 ~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~~~~~~~~-~~~~----------~~------~~~-  234 (451)
T 1pw4_A          192 PAFCAILVALFAFAMMRD----TPQSCGL---------------PPIEEYKND-YPDD----------YN------EKA-  234 (451)
T ss_dssp             HHHHHHHHHHHHHHHCCC----SSTTTCC---------------CSCTTTCCC---------------------------
T ss_pred             HHHHHHHHHHHHHhhccC----CHhhcCC---------------CChhhhccc-cccc----------ch------hhh-
Confidence            877766655544332221    1111000               000000000 0000          00      000 


Q ss_pred             hhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCc---cccch
Q 012514          182 ILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPP---ASVFG  258 (462)
Q Consensus       182 i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~---~~~~~  258 (462)
                          ..     ...++   +....+..+-..+..+.+...+.+..+....+.+   ...+....+    .++   +.+.+
T Consensus       235 ----~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g----~~~~~~~~~~~  295 (451)
T 1pw4_A          235 ----EQ-----ELTAK---QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS---PTYLKEVKH----FALDKSSWAYF  295 (451)
T ss_dssp             -------------CCT---HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH---HHHBTTBSC----CCHHHHHHHHH
T ss_pred             ----hc-----ccccc---cchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcC----CCHHHHHHHHH
Confidence                00     00000   0000000000011222222233333222222111   122322223    333   24455


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHH-HHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514          259 LTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSI-ATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA  337 (462)
Q Consensus       259 ~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli  337 (462)
                      +..+..++..++..++.    +|..+     +..+.+.++.++.+ ++++...+.                ...+.++.+
T Consensus       296 ~~~~~~~~~~~~~g~l~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~  350 (451)
T 1pw4_A          296 LYEYAGIPGTLLCGWMS----DKVFR-----GNRGATGVFFMTLVTIATIVYWMN----------------PAGNPTVDM  350 (451)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHTST-----TCHHHHHHHHHHHHHHHHHHTTSC----------------CTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----HHHhc-----CCchhHHHHHHHHHHHHHHHHHHh----------------cccCHHHHH
Confidence            55555666666665544    33200     11223334444433 444333211                012455566


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhH-HHHHHHHHHhhcccccccCCCccccCCCccchhHHH
Q 012514          338 PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGA-ANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKF  416 (462)
Q Consensus       338 ~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~-g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~  416 (462)
                      ...++.+++.....+....++.+..|++.||.++|++.....+ |..+++.+.+.+..            ..+   ....
T Consensus       351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~------------~~g---~~~~  415 (451)
T 1pw4_A          351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD------------FFG---WDGG  415 (451)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------SSC---SHHH
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcC---cHHH
Confidence            6677888888888888899999999999999999999999998 99999888764431            111   2345


Q ss_pred             HHHHHHHHHHHHHHHHhhhhc
Q 012514          417 YWLLAALVAANLFVYVVVARR  437 (462)
Q Consensus       417 f~~la~l~~~~~v~~~~~~~~  437 (462)
                      |+..++++++..++++...++
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          416 FMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            677777777777666665443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.04  E-value=3.9e-08  Score=99.32  Aligned_cols=87  Identities=14%  Similarity=0.194  Sum_probs=71.1

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-hccc------
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ-EHVS------   94 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~-~~~g------   94 (462)
                      .+.+.++++.++.++|.|...|...+++.|.+++++      +.++++++..+.++|.++++.+++++. +..+      
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  188 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV  188 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            347889999999999999999999999999998654      256799999999999999999999987 5544      


Q ss_pred             -------------------hhhHHHHHHHHHHHHHHHHH
Q 012514           95 -------------------WGAADVIITIVMAVSLLIFI  114 (462)
Q Consensus        95 -------------------~~~~F~i~~i~~~~~~iifl  114 (462)
                                         |++.|.+.++..++..++++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                               89999776655555544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.84  E-value=3.1e-09  Score=105.45  Aligned_cols=83  Identities=16%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      +.+.++++..+.++|.|...|...+++.|.+++++      +.++++++..+.++|..+++.+++++.++.+|+..|.+.
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            46778888899999999999999999999986543      357899999999999999999999999888999999987


Q ss_pred             HHHHHHHHH
Q 012514          103 TIVMAVSLL  111 (462)
Q Consensus       103 ~i~~~~~~i  111 (462)
                      ++..++..+
T Consensus       161 ~~~~~~~~~  169 (375)
T 2gfp_A          161 LVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            766665544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.76  E-value=4.3e-07  Score=93.19  Aligned_cols=80  Identities=14%  Similarity=0.042  Sum_probs=61.1

Q ss_pred             chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc--------c
Q 012514           22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH--------V   93 (462)
Q Consensus        22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~--------~   93 (462)
                      .+.+.++++.++.++|.|+.-+....+++|..+++.      +.+..+++..++.+|.+++..++..+...        .
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  197 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD  197 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence            357889999999999999999999999999976532      25678888999999999988887766442        3


Q ss_pred             chhhHHHHHHHHHH
Q 012514           94 SWGAADVIITIVMA  107 (462)
Q Consensus        94 g~~~~F~i~~i~~~  107 (462)
                      .|++.+.+..+..+
T Consensus       198 ~~~~~~~~~~~~~~  211 (491)
T 4gc0_A          198 GWRYMFASECIPAL  211 (491)
T ss_dssp             HHHHHHHTTHHHHH
T ss_pred             hhHHHhhhhhhhhh
Confidence            45555555444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.41  E-value=1.3e-06  Score=88.30  Aligned_cols=138  Identities=12%  Similarity=0.061  Sum_probs=84.3

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      .+.+++.+..++..++..++.++..+|           +.+.+|.++.+++++..++                  ..+.+
T Consensus       263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~------------------~~~~~  313 (417)
T 2cfq_A          263 YVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSF------------------ATSAL  313 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTT------------------CCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHH------------------hccHH
Confidence            345555555555666666654433222           2344666666665544321                  11334


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF-YLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL  413 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~-~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l  413 (462)
                      +++...++.+++.....+....++.+..|++.||..+|+ +....++|+.+++.+.+.+.            +..+   .
T Consensus       314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~------------~~~g---~  378 (417)
T 2cfq_A          314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY------------ESIG---F  378 (417)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH------------HHSH---H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH------------HhcC---c
Confidence            444455566777666677778899999999999999988 46777788888877766322            1111   2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 012514          414 DKFYWLLAALVAANLFVYVVVAR  436 (462)
Q Consensus       414 ~~~f~~la~l~~~~~v~~~~~~~  436 (462)
                      ...|...++++++..++.+...+
T Consensus       379 ~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          379 QGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhc
Confidence            33466777777777666655444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.22  E-value=4.1e-05  Score=76.89  Aligned_cols=113  Identities=8%  Similarity=0.003  Sum_probs=88.8

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.+...+..++..|+..++.++..+|           +-+.+|.++.+++.+.......               ..+.
T Consensus        64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~---------------~~~~  117 (438)
T 3o7q_A           64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE---------------IMNY  117 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH---------------TTCH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc---------------cccH
Confidence            3466666777777888888766544433           3467888888888877643221               1356


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      ++++...++.|+|.....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus       118 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A          118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777889999999999999999999999999999999999999999999998887654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.14  E-value=5.5e-05  Score=76.15  Aligned_cols=113  Identities=11%  Similarity=0.069  Sum_probs=87.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.++..+...+..|+..++.++..+|           +-+.+|.++.+++.+..++....              ..+.
T Consensus        65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~  119 (451)
T 1pw4_A           65 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA--------------TSSI  119 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH--------------HSSS
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc--------------cccH
Confidence            4566667777777788887766544333           34667888888888777652110              0245


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++++...++.++|+....|....++.+..|++.|+.++|++....++|..+++.+.+.
T Consensus       120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  177 (451)
T 1pw4_A          120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  177 (451)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677788999999999999999999999999999999999999999999999887764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.08  E-value=0.00011  Score=75.18  Aligned_cols=143  Identities=15%  Similarity=0.150  Sum_probs=101.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHH-HHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVP-VLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS  332 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p-~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s  332 (462)
                      +++.+...+...+..|+..++-++ ..+|           +-+.+|.++.+++.+..++                  ..+
T Consensus        57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~------------------~~~  107 (491)
T 4aps_A           57 ASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLAL------------------PFG  107 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHS------------------CCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHH------------------hhh
Confidence            356667777777888888876654 3333           2456777777777766543                  124


Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--hhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCcc
Q 012514          333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSM--RSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNS  410 (462)
Q Consensus       333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~--~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~  410 (462)
                      .++++...++.++|+....|....++.+..|++.  |+..++++.....+|..+++.+.+.+...            .+ 
T Consensus       108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------------~g-  174 (491)
T 4aps_A          108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA------------AG-  174 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------SC-
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh------------hh-
Confidence            5666778899999999999999999999999988  77888889999999999998887654311            11 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514          411 SRLDKFYWLLAALVAANLFVYVVVARRYSY  440 (462)
Q Consensus       411 ~~l~~~f~~la~l~~~~~v~~~~~~~~~~~  440 (462)
                        ...-|+..+++.++..++++...+++.+
T Consensus       175 --~~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          175 --YHVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence              1334555666666666666666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.85  E-value=5.3e-05  Score=74.62  Aligned_cols=109  Identities=19%  Similarity=0.139  Sum_probs=84.5

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      +..++..+...+..|+..++.+    |++       ..+-+.+|.++.+++.+..++..                  +.+
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~d----r~g-------~r~~~~~~~~~~~~~~~~~~~~~------------------~~~   89 (375)
T 2gfp_A           39 SVMGAYLLTYGVSQLFYGPISD----RVG-------RRPVILVGMSIFMLATLVAVTTS------------------SLT   89 (375)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHT----TSC-------CCCCCHHHHHHHHHHHHHHHHHH------------------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HhC-------CchhHHHHHHHHHHHHHHHHHhc------------------cHH
Confidence            4556666677777777776543    432       22335578888888877766542                  345


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV  392 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~  392 (462)
                      +++...++.+++.....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus        90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  147 (375)
T 2gfp_A           90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL  147 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6667789999999999999999999999999999999999999999999998887643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.73  E-value=0.00037  Score=71.89  Aligned_cols=142  Identities=17%  Similarity=0.135  Sum_probs=93.7

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514          255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF  334 (462)
Q Consensus       255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~  334 (462)
                      ++.+...+..++..|+..++.+    |+.      ...+-+.+|.++.+++.+..++.                 +.+.+
T Consensus        58 ~~~~~~~~~~~~~~~~~G~l~d----r~~------g~r~~~~~~~~~~~~~~~~~~~~-----------------~~~~~  110 (524)
T 2xut_A           58 DVFHSFVIGVYFFPLLGGWIAD----RFF------GKYNTILWLSLIYCVGHAFLAIF-----------------EHSVQ  110 (524)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHT----TSS------CSHHHHHHHHHHHHHHHHHHHHT-----------------SSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHh------cchHHHHHHHHHHHHHHHHHHHh-----------------cccHH
Confidence            4555556666666677666543    320      12334567777777777665542                 12456


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH---HHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514          335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF---YLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS  411 (462)
Q Consensus       335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~---~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~  411 (462)
                      +++...++.++|+....|...+++.+..|++.|+..+++   +.....+|..+++.+.+.+.            +..+  
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~------------~~~g--  176 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL------------KNFG--  176 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH------------HTSC--
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cccc--
Confidence            677788999999999999999999999999999877666   88888888888887765332            1111  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012514          412 RLDKFYWLLAALVAANLFVYVVVARRY  438 (462)
Q Consensus       412 ~l~~~f~~la~l~~~~~v~~~~~~~~~  438 (462)
                       ....|++.+++.++..++++...+++
T Consensus       177 -~~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          177 -AAVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             13345666666666555554444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.72  E-value=0.024  Score=57.41  Aligned_cols=122  Identities=19%  Similarity=0.101  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHH
Q 012514          259 LTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAP  338 (462)
Q Consensus       259 ~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~  338 (462)
                      .-.+..++..++..++-+++.||.           -+.++.++..++.+..++....................+.+.++.
T Consensus        63 ~~~~G~~iG~~~~G~laDr~GRk~-----------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~  131 (491)
T 4gc0_A           63 SALIGCIIGGALGGYCSNRFGRRD-----------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI  131 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence            334444555556565554444442           355677777766665554221000000000000001235566777


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          339 QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       339 ~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      .-++.|+|+....+....++.+.+|++.|+..++++.....+|..++..+...
T Consensus       132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~  184 (491)
T 4gc0_A          132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF  184 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence            88999999999999999999999999999999999999999999888766543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=94.41  E-value=0.018  Score=57.49  Aligned_cols=86  Identities=9%  Similarity=0.003  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514           24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNW-WNSGLCSGLLLGVTVVVYVQEHVSWGAADVII  102 (462)
Q Consensus        24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~-fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~  102 (462)
                      .+.+.+...+.+++.+.+.+...++..|.++++      .+..++.+ +..+.++|..++|.++|++.++.|+...|.+.
T Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~  385 (417)
T 2cfq_A          312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL  385 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence            344555555566666666666778888887632      12566777 46677799999999999998888999999988


Q ss_pred             HHHHHHHHHHHHH
Q 012514          103 TIVMAVSLLIFII  115 (462)
Q Consensus       103 ~i~~~~~~iifl~  115 (462)
                      ++..+++.++.+.
T Consensus       386 ~~~~l~~~~~~~~  398 (417)
T 2cfq_A          386 GLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            8877777765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	462
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.23
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.85
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.37
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.49

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=2.8e-10  Score=112.47  Aligned_cols=87  Identities=14%  Similarity=0.142  Sum_probs=69.3

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-cchhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH-VSWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i  101 (462)
                      +...++++..+.++|.|...|...++++|.+++++      +..+++++..+.++|.++++.+.+++... .+|++.|.+
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~  188 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  188 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence            35678888899999999999999999999987543      25789999999999999999888876554 478998888


Q ss_pred             HHHHHHHHHHHHHH
Q 012514          102 ITIVMAVSLLIFII  115 (462)
Q Consensus       102 ~~i~~~~~~iifl~  115 (462)
                      .++..++..++.+.
T Consensus       189 ~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         189 PAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHH
Confidence            77666655544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.4e-08  Score=97.65  Aligned_cols=118  Identities=11%  Similarity=0.031  Sum_probs=83.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514          291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG  370 (462)
Q Consensus       291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~  370 (462)
                      ..+-+.++.++.+++++...+                  ..+.++.+...++.+++..+..+...+++.+..|++.||..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (417)
T d1pv7a_         288 GKNALLLAGTIMSVRIIGSSF------------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI  349 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred             cccchhhhHHHHHHhhhcccc------------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHH
Confidence            334456677777666665543                  13456667778899999999999999999999999999999


Q ss_pred             HHHHH-HHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514          371 IAFYL-SVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYK  441 (462)
Q Consensus       371 ~g~~~-l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~  441 (462)
                      +|+.+ +..++|..+++.+.+.+.            |..+   ....|+..++++++..++.++.-|+-+..
T Consensus       350 ~~~~~~~~~~~g~~i~~~~~G~l~------------~~~g---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         350 YLVCFCFFKQLAMIFMSVLAGNMY------------ESIG---FQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHH------------HHHC---HHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------------HHHC---HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            99854 667788888877766332            1111   23446777888887777777766655443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=7.6e-06  Score=79.64  Aligned_cols=113  Identities=11%  Similarity=0.069  Sum_probs=88.2

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514          254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV  333 (462)
Q Consensus       254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~  333 (462)
                      +++.+...+...+..|+.+.+.++..+|           +-+.+|+++.+++.+..++....              ..+.
T Consensus        62 g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  116 (447)
T d1pw4a_          62 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA--------------TSSI  116 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH--------------HSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHhhccccchh--------------hhhH
Confidence            4566777777778888888776554433           34567888888888777664321              1345


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514          334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV  391 (462)
Q Consensus       334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~  391 (462)
                      ++++...++.++++....+.....+.+..|++.|+.++|++....++|..+++.+...
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  174 (447)
T d1pw4a_         117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  174 (447)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence            6677788999999999999999999999999999999999999999999888776553

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0014  Score=61.26  Aligned_cols=87  Identities=9%  Similarity=0.003  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514           23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNS-GLCSGLLLGVTVVVYVQEHVSWGAADVI  101 (462)
Q Consensus        23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~-~iNiG~~i~~~~~~~l~~~~g~~~~F~i  101 (462)
                      +.+.+++...+.+++.|...|...++..|.++++.      +.+.+++.+. ..++|..+++.+.|++.+++||+..|.+
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~  384 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV  384 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            46777888889999999999999999999987543      2567887664 5569999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHH
Q 012514          102 ITIVMAVSLLIFII  115 (462)
Q Consensus       102 ~~i~~~~~~iifl~  115 (462)
                      .++..+++.++..+
T Consensus       385 ~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         385 LGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777776665544