Citrus Sinensis ID: 012519

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEcccccEEEcccccEEEEcccccccccEEEEEEcccccccccEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEHHHHHHHEEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHEEHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHccccHHHEEEHHHHccHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEHHHccHHHHccccccHHcccHHHHHHHccc
Coil and Loop (DISEMBL)
msscslspyrpiyvhinNKFIGIKsinlqfssqfpykstnrklfrnvssnsgsvglrTIVGcrvrtgvssndksfdlapnedealapnflefiTSERVKVVSMLALALALCNADRVVMSVAIVPLSlahgwsrsfsgivQSSFlwgylvspiaggtlvdyyGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEgvalpamnnmvarWFPQTERARAVAIAMggftsgnaiGLVLSpilmsqagifgpfVIFGLSGFLWVLVWLSatsstpdrhpqiskYELEYILREkqkpllmgnkhkpatvippfrrllskmptWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDlrqaswfsavpWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIgltaakspvMASAWLTLAIGMKSFSHSGFLVNlqeiapqysgvlhgi
Flexible Loop (DISEMBL)
msscslspyrPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFrnvssnsgsvglrtivgcrvrtgvssndksfdlapnEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSatsstpdrhpqiSKYELEYILREKqkpllmgnkhkpatvippfRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI
Low Complexity Region (SEG)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI
Disordered region (IsUnstruct)
*******PYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGV***************ALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT*********ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGV****
Disordered Region (DISOPRED)
******************************************************************************************EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI********************PPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI
Disordered Region (DISEMBL)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI
Disordered Region (DISPRO)
******SPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCR***********************PNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQK***********TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	461	2.2.26 [Sep-21-2011]
Q66GI9	533	Probable anion transporte	yes	no	0.924	0.799	0.724	1e-173
Q8W0H5	519	Probable anion transporte	yes	no	0.802	0.712	0.706	1e-148
Q7XJR2	512	Probable anion transporte	no	no	0.939	0.845	0.482	1e-117
Q53WP9	535	Probable anion transporte	no	no	0.780	0.672	0.532	1e-107
Q652N5	591	Probable anion transporte	no	no	0.804	0.627	0.406	2e-80
Q8GX78	541	Probable anion transporte	no	no	0.776	0.661	0.407	2e-79
O82390	512	Sodium-dependent phosphat	no	no	0.828	0.746	0.403	3e-76
Q9SDI4	529	Probable anion transporte	no	no	0.776	0.676	0.418	4e-76
Q3E9A0	517	Probable anion transporte	no	no	0.772	0.688	0.327	6e-50
Q9MZD1	495	Sialin OS=Ovis aries GN=S	N/A	no	0.704	0.656	0.333	1e-45

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  608 bits (1569), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 316/436 (72%), Positives = 364/436 (83%), Gaps = 10/436 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGI 461
           NLQEIAP+YSGVLHG+
Sbjct: 459 NLQEIAPEYSGVLHGM 474

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  524 bits (1349), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/371 (70%), Positives = 316/371 (85%), Gaps = 1/371 (0%)

Query: 91  EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVS 150
           EF+TSERVKV +ML LALALCNADRVVMSVAIVPLS A+GW+ SF+G+VQSSFLWGYLVS
Sbjct: 91  EFVTSERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVS 150

Query: 151 PIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAM 210
           PI GG LVDYYGGK +MA+GVALWSLATFL+PWAA  SL   L+ R ++G+AEGVALP+M
Sbjct: 151 PIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSM 210

Query: 211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL 270
           NNMV RWFP+TER+ AV IAM GF  GN IGL+LSPI+MS+AGIFGPFVIFGL GFLWVL
Sbjct: 211 NNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVL 270

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
           VW+SA S TP  + QIS +EL+YI R  QK +   +  +    +PPF +LLSK PTW++I
Sbjct: 271 VWISAISGTPGENAQISAHELDYITR-GQKLVKTQSGGERLRKVPPFSKLLSKWPTWALI 329

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
            ANAMHSWG+FVILSWMP+YF  +YH++LR+A+WFSA+PW +MA  GY+ G++SD LIQ 
Sbjct: 330 SANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQN 389

Query: 391 GTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI 450
           GTS+TLTRKI+Q+IGF+ PG+AL+GL AAKSPV+ASAWLT+A+G+KSF HSGFLVNLQEI
Sbjct: 390 GTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEI 449

Query: 451 APQYSGVLHGI 461
           APQY+GVLHG+
Sbjct: 450 APQYAGVLHGM 460

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/473 (48%), Positives = 308/473 (65%), Gaps = 40/473 (8%)

Query: 2   SSCSLS-PYRPI--------YVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSG 52
           SSCS S P  PI        +V  + +   I+  NL++SS+   K       RN ++   
Sbjct: 13  SSCSSSFPRNPIVNRKALLGFVFDSARKNQIRCENLRYSSESDGKR------RNAAAKKR 66

Query: 53  SVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCN 112
           +          V TG   ++     A  E   + P        ER+KVV + A  + LCN
Sbjct: 67  NQSPERCAAEGVLTGGGGSE-----AIAEVRTMMP--------ERIKVVILTACMMCLCN 113

Query: 113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA 172
           ADRVVMSVA+VPL+   GWS SF G+VQSSFLWGY+ S + GG LVD YGGK ++AWGVA
Sbjct: 114 ADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVA 173

Query: 173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG 232
           LWSLAT LTPWAA  S LALL +RA  GLAEGVA+P+M  +++RWFP  ERA AV I+M 
Sbjct: 174 LWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMA 233

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 292
           GF  GN +GL+L+P+++S  GI GPF++F   G LWV  W S  ++ P   P I++ EL 
Sbjct: 234 GFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELR 293

Query: 293 YILREKQKPLLMGNKHKPATVIPP----FRRLLSKMPTWSIIVANAMHSWGFFVILSWMP 348
            I  +  KP+      +P+T+ P      R LLSK+PTW+II AN  ++WG+FV+LSWMP
Sbjct: 294 LI--QAGKPV------QPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMP 345

Query: 349 IYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 408
           +YF  V++++L+QA+WFSA+PW+ MA +GY  G  SD LI+ G SVT  RKI+QSIGF+ 
Sbjct: 346 VYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMG 405

Query: 409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
           PG++L+ L  AKSP  A+ ++T+A+ + SFS +GFL+N+Q+IAPQY+G LHGI
Sbjct: 406 PGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGI 458

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/366 (53%), Positives = 261/366 (71%), Gaps = 6/366 (1%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           ER KVV+++A  + LCNADRVVMSVA+VP +  +GWS SF GIVQSSFLWGY+ S + GG
Sbjct: 121 ERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGG 180

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            L D YGGK +MA   ALWSLATFLTPWAA  S + LLA+RA+ GLAEGVA P M+  + 
Sbjct: 181 ALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLP 240

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +WFP  ERA AV I+MGGF  GN I  + +PI+MS  G+ G F  F   G+LW+ VWL  
Sbjct: 241 KWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFN 300

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S P     ISK EL+ IL  +    + G+K       P  R +LSK+  W+IIVAN +
Sbjct: 301 VESDPLDSRTISKSELQLILAGRSASKIQGSK------FPSLREILSKIEMWAIIVANVV 354

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           ++WG+FV+LSWMP+YF  VY+++L+QA+WFSA+PW+VMA +GY+ G  +D LI+ G SV 
Sbjct: 355 NNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVA 414

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS 455
           L RKI+QSIGFI PG++L+ L  A++P +A+  +T+A+ + SFS +G+  N+Q+IAP+Y+
Sbjct: 415 LVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYA 474

Query: 456 GVLHGI 461
           G LHG+
Sbjct: 475 GSLHGL 480

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  300 bits (767), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 155/381 (40%), Positives = 233/381 (61%), Gaps = 10/381 (2%)

Query: 81  EDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQ 140
           +   ++P + +F   +R  VV +   +  LCN DRV MS+AI+P+S   GWS +  G++Q
Sbjct: 167 DTNEISPWWQQF--PKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQ 224

Query: 141 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 200
           SSF WGYL++ I GG   D +GGK+++ +GV  WS+AT LTP AA   L  LL MRA +G
Sbjct: 225 SSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMG 284

Query: 201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 260
           + EGVA+PAMNN++++W P +ER+R++A+   G   G+  GL  SP+L+S+ G    F  
Sbjct: 285 IGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYA 344

Query: 261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 320
           FG  G +W  +W     S+P   P++SK E  YIL         G+  K      P++ +
Sbjct: 345 FGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILG--------GSTLKEPVTSIPWKLI 396

Query: 321 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 380
           LSK P W++IV++  H+WG F++L+WMP Y+N V   +L ++     +PW  MA    +G
Sbjct: 397 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIG 456

Query: 381 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 440
           G ++D L+ RG S+T  RKI+QSIGF+ P + L  L+  ++P MA   +  + G  +FS 
Sbjct: 457 GWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQ 516

Query: 441 SGFLVNLQEIAPQYSGVLHGI 461
           SG   N Q+I P+Y+GVL G+
Sbjct: 517 SGLYSNHQDIGPRYAGVLLGL 537

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  297 bits (760), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 228/366 (62%), Gaps = 8/366 (2%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
            R  +V +   +  LCN DRV MS+AI+P+S  + WS +  G++QSSF WGYL++ I GG
Sbjct: 130 RRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGG 189

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              D +GGK+++ +GV  WS AT +TP AA   L  LL +RA +G+ EGVA+PAMNNM++
Sbjct: 190 IWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLS 249

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P +ER+R++A+   G   G+  GL  SP+L+++ G    F  FG  G +W L+WL  
Sbjct: 250 KWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKF 309

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S+P   P +S+        E++K +L G+K +    + P++ +LSK P W++I+++  
Sbjct: 310 AYSSPKDDPDLSE--------EEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFC 361

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           H+WG F++L+WMP Y+N V   +L ++     +PW  MA    +GG ++D L+ RG S+T
Sbjct: 362 HNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSIT 421

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS 455
             RKI+QSIGF+ P   L  L+  K+P MA   +  + G  +FS SG   N Q+I P+Y+
Sbjct: 422 NVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYA 481

Query: 456 GVLHGI 461
           GVL G+
Sbjct: 482 GVLLGL 487

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  286 bits (731), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 159/394 (40%), Positives = 231/394 (58%), Gaps = 12/394 (3%)

Query: 68  VSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSL 127
           VS N+     +P+    + P + EF   +R  +V +   A  LCN DRV MS+AI+P+S 
Sbjct: 77  VSGNNDVVSDSPSS--IVLPWWEEF--PKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query: 128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
            +GW+ +  G++QSSF WGYL++ IAGG   D  GGK ++ +GV  WS+AT LTP AA  
Sbjct: 133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query: 188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI 247
            L  LL +RA +G+ EGVA+PAMNN++++W P  ER+R++A+   G   G+  GL  SP 
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query: 248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNK 307
           L+ Q G    F  FG  G +W+ +WL+   S+P   P         +L E++K +     
Sbjct: 253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPT--------LLPEERKLIADNCA 304

Query: 308 HKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 367
            K      P+R +LSK P W++I  +  H+WG F++L+WMP Y++ V   +L ++   S 
Sbjct: 305 SKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSV 364

Query: 368 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA 427
            PW  MA +   GG ++D L+ RG SVT  RKI+Q+IGF+ P   L  L    SP MA  
Sbjct: 365 FPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVL 424

Query: 428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
            +  + G  +FS SG   N Q+IAP+YSGVL G+
Sbjct: 425 CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGL 458

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  285 bits (730), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 153/366 (41%), Positives = 217/366 (59%), Gaps = 8/366 (2%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           +R  +V +   A  LCN DRV MS+AI+P+S   GW+    G++QSSF WGYL++ IAGG
Sbjct: 118 KRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGG 177

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              D  GGK ++ +GV  WS+AT LTP+AA   L  LL  RA +G+ EGVA+PAMNN+++
Sbjct: 178 IWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILS 237

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P +ER+R++A+   G   G+  GL  SP+L+   G    F  FG  G  W   W S 
Sbjct: 238 KWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASK 297

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S+P   P IS  E + I  +           +P   I P+  +LSK P W++IV++  
Sbjct: 298 AYSSPLEDPGISAEEKKLITSQT-------TGGEPVKEI-PWGLILSKPPVWALIVSHFC 349

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           H+WG F++L+WMP Y+N V   +L ++  F  +PW  MA +   GG ++D L+ RG SVT
Sbjct: 350 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVT 409

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS 455
             RKI+QSIGF+ P   L  L+   SP MA   +  + G  +FS SG   N Q+I P+Y+
Sbjct: 410 TVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYA 469

Query: 456 GVLHGI 461
           GVL G+
Sbjct: 470 GVLLGL 475

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  198 bits (504), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 194/370 (52%), Gaps = 14/370 (3%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           +R K++   +LA  +CN D+V +S+AI+P+S   GWS S +G+VQSSF WGY +S + GG
Sbjct: 97  QRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGG 156

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            L   +GG+ ++  GV  WS AT L P  A   +  L+  R +VG+ EGV+  A  +++A
Sbjct: 157 WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIA 215

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL--VWL 273
           R  P  ER+RAV    GG + G+ +GL+L+P ++        F +FGL G  W +   +L
Sbjct: 216 RTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFL 275

Query: 274 SATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 333
           +    +   +   + ++ E   +E+     +G+  K      P++        W++I  +
Sbjct: 276 NEEEVSYKGNEISTSHKSENATKEE-----LGSSLKEI----PWKSFFQSPAVWAMIYTH 326

Query: 334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS 393
              SWG +  LSW+P YF+    ++L +A+W S +P         L    +D LI  G  
Sbjct: 327 FCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVD 386

Query: 394 VTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 451
            T  RKI Q+I F+AP I +    +     P      LT  + + SF+ SG     Q+I+
Sbjct: 387 TTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDIS 446

Query: 452 PQYSGVLHGI 461
           P+Y+ +L GI
Sbjct: 447 PEYASILLGI 456

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 179/336 (53%), Gaps = 11/336 (3%)

Query: 129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS 188
           + W     G +  SF +GY+++ I GG +    GGK+++ +G+   ++ T  TP AAD  
Sbjct: 101 YRWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGIFATAIFTLFTPLAADFG 160

Query: 189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 248
           + AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I+  G   G  + L LS ++
Sbjct: 161 VGALVALRALEGLGEGVTYPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVI 220

Query: 249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                    F  FG+ G +W ++W+   S TP+ H  I+ YE EYIL   +  L   +  
Sbjct: 221 CYYMNWTYVFYFFGIVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQL---SSQ 277

Query: 309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
           K    IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAV
Sbjct: 278 KSVPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAV 333

Query: 369 PWSVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
           P+        L G  +D L  R    TL  R++   IG I P I L+  G        +A
Sbjct: 334 PYLGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYS-LA 392

Query: 426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
            A+LT++  +  F  SGF +N  +IAP Y+G+L GI
Sbjct: 393 VAFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGI 428

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties.

Ovis aries (taxid: 9940)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
224054570	550	predicted protein [Populus trichocarpa]	0.887	0.743	0.793	0.0
225434688	525	PREDICTED: probable anion transporter 4,	0.924	0.811	0.739	1e-175
449470650	530	PREDICTED: probable anion transporter 4,	0.902	0.784	0.759	1e-175
449455040	530	PREDICTED: probable anion transporter 4,	0.902	0.784	0.757	1e-174
297819304	533	hypothetical protein ARALYDRAFT_485075 [	0.993	0.859	0.683	1e-172
17064732	533	putative protein [Arabidopsis thaliana]	0.924	0.799	0.724	1e-172
79314547	534	putative anion transporter 4 [Arabidopsi	0.924	0.797	0.724	1e-171
22331630	533	putative anion transporter 4 [Arabidopsi	0.924	0.799	0.724	1e-171
356553048	515	PREDICTED: probable anion transporter 4,	0.904	0.809	0.737	1e-171
255558820	554	Sialin, putative [Ricinus communis] gi|2	0.932	0.776	0.704	1e-170

>gi|224054570|ref|XP_002298326.1| predicted protein [Populus trichocarpa] gi|222845584|gb|EEE83131.1| predicted protein [Populus trichocarpa]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/411 (79%), Positives = 358/411 (87%), Gaps = 2/411 (0%)

Query: 51  SGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALAL 110
           +GSV  RT+   RVR  VSSND  F     + E  AP+F EFITSER+KVVSMLALALAL
Sbjct: 60  NGSVEFRTVPSLRVR--VSSNDAQFGSLNEDCEPKAPSFREFITSERIKVVSMLALALAL 117

Query: 111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG 170
           CNADRVVMSVAIVPLSLAHGWSRSFSG+VQSSFLWGYL+SPIAGGTLVDYYGGK++M WG
Sbjct: 118 CNADRVVMSVAIVPLSLAHGWSRSFSGVVQSSFLWGYLISPIAGGTLVDYYGGKVVMGWG 177

Query: 171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA 230
           VALWSLATFLTPWAADTSL ALLA RA++G+AEGVALP MNNM+ARWFPQTERARAV IA
Sbjct: 178 VALWSLATFLTPWAADTSLWALLATRAMLGIAEGVALPCMNNMIARWFPQTERARAVGIA 237

Query: 231 MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE 290
           M GF  GNAIGL+LSPILMS+ GIFGPFVIFGLSGFLWVLVWLSA SSTPDR  QISKYE
Sbjct: 238 MAGFQFGNAIGLMLSPILMSKGGIFGPFVIFGLSGFLWVLVWLSAISSTPDRSSQISKYE 297

Query: 291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           LEYIL +  K   M NK K   +IPPFRRLLSKMPTWS+I+ANAMHSWGFFVILSWMPIY
Sbjct: 298 LEYILNKGWKSFPMENKPKTNRIIPPFRRLLSKMPTWSLIIANAMHSWGFFVILSWMPIY 357

Query: 351 FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG 410
           FN +YH+DL+QA+WFSAVPWSVM F GY GG  SDMLI+ G SVTLTRKI+QSIGF  PG
Sbjct: 358 FNTIYHVDLKQAAWFSAVPWSVMGFMGYFGGTWSDMLIRSGISVTLTRKIMQSIGFFGPG 417

Query: 411 IALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
           IALIGLT A++P +ASAWLT+A+G+KSFSHSGFLVNLQEIAP+YSGVLHGI
Sbjct: 418 IALIGLTTARNPFLASAWLTIAVGLKSFSHSGFLVNLQEIAPRYSGVLHGI 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434688|ref|XP_002279865.1| PREDICTED: probable anion transporter 4, chloroplastic [Vitis vinifera]

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 324/438 (73%), Positives = 367/438 (83%), Gaps = 12/438 (2%)

Query: 34  FPYK---STNRKLFRNVSSNSGSVGLR-----TIVGCRVRTGVSSNDKSFDLAP--NEDE 83
           FP++   ST +  FR VSS + S+ LR        G R R      D SF       E E
Sbjct: 34  FPFRLIESTKQNSFRIVSSAT-SLRLRLRYDSVERGLRARVSSDGGD-SFTGGELQEEKE 91

Query: 84  ALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSF 143
             AP+F+EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+HGWSRSF G+VQSSF
Sbjct: 92  LQAPSFVEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSHGWSRSFGGVVQSSF 151

Query: 144 LWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE 203
           LWGYL+SPIAGG LVDYYGGK++MAWGVALWSLATFLTPWAA+TS+ ALL MRA++G+AE
Sbjct: 152 LWGYLISPIAGGALVDYYGGKVVMAWGVALWSLATFLTPWAAETSIWALLTMRALLGVAE 211

Query: 204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263
           GVALP MNNMVARWFPQTER+RAV IAM GF  G+AIGL L+PILMSQ GIFGPFVIFGL
Sbjct: 212 GVALPCMNNMVARWFPQTERSRAVGIAMAGFQLGSAIGLTLAPILMSQGGIFGPFVIFGL 271

Query: 264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK 323
           SGFLWVLVW+SATSSTPD++PQISK EL+YIL   +K   + N+ K   VIPPFRRLLSK
Sbjct: 272 SGFLWVLVWISATSSTPDQNPQISKSELDYILNNGRKSFRVENQAKRTKVIPPFRRLLSK 331

Query: 324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLL 383
            PTWS+IVANAMHSWGFFVILSWMPIYFN ++ +DL QA+WFSAVPWS+MA  GY GG  
Sbjct: 332 PPTWSLIVANAMHSWGFFVILSWMPIYFNTIHRVDLTQAAWFSAVPWSMMAIVGYFGGAW 391

Query: 384 SDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF 443
           SD+LIQRG SVT+TRKI+QSIGF+ PGIALIGLTAAKSP++ASAWLTLA+G+KSFSHSGF
Sbjct: 392 SDILIQRGLSVTMTRKIMQSIGFVGPGIALIGLTAAKSPLIASAWLTLAVGLKSFSHSGF 451

Query: 444 LVNLQEIAPQYSGVLHGI 461
           LVNLQEIAPQYSGVLHG+
Sbjct: 452 LVNLQEIAPQYSGVLHGL 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470650|ref|XP_004153029.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449474939|ref|XP_004154326.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449510734|ref|XP_004163745.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 326/429 (75%), Positives = 366/429 (85%), Gaps = 13/429 (3%)

Query: 45  RNVSSNSGSVGLRTIVGCR------------VRTGVSSNDKSFDLAPNEDEALAPNFLEF 92
           RN + +  S G   + G R             R GVSSND  F     + +  +P+F EF
Sbjct: 44  RNCTGSLSSAGYFPVFGLRNGSSSDSGFVLPSRIGVSSNDAQFGSFAEDKDMESPSFFEF 103

Query: 93  ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPI 152
           ITSERVKVV+MLALALALCNADRVVMSVAIVPLSL++GWSRSF+GIVQSSFLWGY VSPI
Sbjct: 104 ITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFAGIVQSSFLWGYFVSPI 163

Query: 153 AGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212
           AGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G+AEGVALP MNN
Sbjct: 164 AGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLGIAEGVALPCMNN 223

Query: 213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 272
           MVARWFP TERARAV IAM GF  G+AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW
Sbjct: 224 MVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 283

Query: 273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA 332
           LSA SSTPDR+ QISKYELEY+L ++Q+P ++ N  K  TVIPPF+RLLSKMPTWS+I+A
Sbjct: 284 LSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRLLSKMPTWSLIIA 342

Query: 333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT 392
           NAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA  GY+GGL SD LI+ GT
Sbjct: 343 NAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVGGLWSDGLIKSGT 402

Query: 393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP 452
           SVTLTRKI+QSIGFI PGIALIGLT+A+S  +ASAWLTLA+G+KSFSHSGFLVNLQEIAP
Sbjct: 403 SVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVGLKSFSHSGFLVNLQEIAP 462

Query: 453 QYSGVLHGI 461
           QYSGVLHG+
Sbjct: 463 QYSGVLHGM 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455040|ref|XP_004145261.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus]

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 325/429 (75%), Positives = 365/429 (85%), Gaps = 13/429 (3%)

Query: 45  RNVSSNSGSVGLRTIVGCR------------VRTGVSSNDKSFDLAPNEDEALAPNFLEF 92
           RN + +  S G   + G R             R GVSSND  F     + +  +P+F EF
Sbjct: 44  RNCTGSLSSAGYFPVFGLRNGSSSDSGFVLPSRIGVSSNDAQFGSFAEDKDMESPSFFEF 103

Query: 93  ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPI 152
           ITSERVKVV+MLALALALCNADRVVMSVAIVPLSL++GWSRSF+GIVQSSFLWGY VSPI
Sbjct: 104 ITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFAGIVQSSFLWGYFVSPI 163

Query: 153 AGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212
           AGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G+AEGVALP MNN
Sbjct: 164 AGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLGIAEGVALPCMNN 223

Query: 213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 272
           MVARWFP TERARAV IAM GF  G+AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW
Sbjct: 224 MVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 283

Query: 273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA 332
           LSA SSTPDR+ QISKYELEY+L ++Q+P ++ N  K  TVIPPF+RLLSKMPTWS+I+A
Sbjct: 284 LSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRLLSKMPTWSLIIA 342

Query: 333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT 392
           NAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA  GY+GGL SD LI+ GT
Sbjct: 343 NAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVGGLWSDGLIKSGT 402

Query: 393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP 452
           SVTLTRKI+QSIGFI PGIALIGLT+A+S  +ASAWLTLA+ +KSFSHSGFLVNLQEIAP
Sbjct: 403 SVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVWLKSFSHSGFLVNLQEIAP 462

Query: 453 QYSGVLHGI 461
           QYSGVLHG+
Sbjct: 463 QYSGVLHGM 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819304|ref|XP_002877535.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata] gi|297323373|gb|EFH53794.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata]

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 320/468 (68%), Positives = 372/468 (79%), Gaps = 10/468 (2%)

Query: 2   SSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLF----RNVSS----NSGS 53
           SS        + +H +   +      L+     P +   RKL     R+V S     + +
Sbjct: 9   SSIDFRNRSSLKIHGDRAILDSNLPTLRRIPSLPERDRRRKLLLCSGRSVGSLRFTGNTA 68

Query: 54  VGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNA 113
           V L  I   R+R   S   +S +    E  A  PNF EFITSERVKVV+MLALALALCNA
Sbjct: 69  VHLCGIPRHRLRVSCSDARRSPEETAAEMTA-QPNFSEFITSERVKVVAMLALALALCNA 127

Query: 114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL 173
           DRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLWGYL+SPIAGGTLVD YGGK++MAWGVAL
Sbjct: 128 DRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWGVAL 187

Query: 174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGG 233
           WSLATFLTPWAAD+SL ALLA RA+VG+AEGVALP MNNMVARWFP TER+RAV IAM G
Sbjct: 188 WSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVARWFPSTERSRAVGIAMAG 247

Query: 234 FTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 293
           F  GN +GL+LSPILMSQ GI+GPFVIFGLSGFLW+LVWLSATSS PDRHPQI+K ELEY
Sbjct: 248 FQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSELEY 307

Query: 294 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF 353
           I ++KQ+P    NK      IPPF RLLSKMPTW++IVAN+MHSWGFFVILSWMPIYFN 
Sbjct: 308 I-KQKQQPSTGENKRNTTGGIPPFGRLLSKMPTWAVIVANSMHSWGFFVILSWMPIYFNS 366

Query: 354 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL 413
           VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD+LI+RGTS+TLTRKI+QSIGFI PGI+L
Sbjct: 367 VYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGTSITLTRKIMQSIGFIGPGISL 426

Query: 414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
           IGLT AK P++ASAWL+LA+G+KSFSH GFL+NLQEIAP+YSGVLHG+
Sbjct: 427 IGLTTAKQPLVASAWLSLAVGLKSFSHLGFLINLQEIAPEYSGVLHGM 474

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17064732|gb|AAL32520.1| putative protein [Arabidopsis thaliana]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 316/436 (72%), Positives = 364/436 (83%), Gaps = 10/436 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPTTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGI 461
           NLQEIAP+YSGVLHG+
Sbjct: 459 NLQEIAPEYSGVLHGM 474

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79314547|ref|NP_001030824.1| putative anion transporter 4 [Arabidopsis thaliana] gi|332644707|gb|AEE78228.1| putative anion transporter 4 [Arabidopsis thaliana]

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 316/436 (72%), Positives = 364/436 (83%), Gaps = 10/436 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGI 461
           NLQEIAP+YSGVLHG+
Sbjct: 459 NLQEIAPEYSGVLHGM 474

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331630|ref|NP_190282.2| putative anion transporter 4 [Arabidopsis thaliana] gi|75253404|sp|Q66GI9.1|ANTR4_ARATH RecName: Full=Probable anion transporter 4, chloroplastic; AltName: Full=Phosphate transporter PHT4;3; Flags: Precursor gi|51536596|gb|AAU05536.1| At3g46980 [Arabidopsis thaliana] gi|332644705|gb|AEE78226.1| putative anion transporter 4 [Arabidopsis thaliana]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 316/436 (72%), Positives = 364/436 (83%), Gaps = 10/436 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGI 461
           NLQEIAP+YSGVLHG+
Sbjct: 459 NLQEIAPEYSGVLHGM 474

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553048|ref|XP_003544870.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Glycine max]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 315/427 (73%), Positives = 356/427 (83%), Gaps = 10/427 (2%)

Query: 37  KSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPN-FLEFITS 95
           K T  K F N SS S    LR++     R  VSSND  F+  P E +    + F EFITS
Sbjct: 37  KRTEFKFFANGSSAS----LRSLP----RLYVSSNDARFNSGPEESQQQQSSSFAEFITS 88

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           ERVKVV+MLALALALCNADRVVMSVAIVPLSLA+GWSR+F+GIVQSSFLWGYLVSPIAGG
Sbjct: 89  ERVKVVAMLALALALCNADRVVMSVAIVPLSLANGWSRAFAGIVQSSFLWGYLVSPIAGG 148

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            LVD+YGGK++MAWGVALWSLATFLTPWA+ TSLLALL +RA++G+AEGVALP+MNNMV 
Sbjct: 149 VLVDHYGGKVVMAWGVALWSLATFLTPWASQTSLLALLTVRALLGVAEGVALPSMNNMVV 208

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           RWFPQTER+RAV I+M GF  G AIGL LSPILMSQ GIFGPFVIFGLSGFLWVLVWLSA
Sbjct: 209 RWFPQTERSRAVGISMAGFMLGCAIGLTLSPILMSQGGIFGPFVIFGLSGFLWVLVWLSA 268

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRRLLSKMPTWSIIVANA 334
           TSSTPD+ PQISKYELEYIL  +QK   +   K K   VIPPFRRLLSK+PTWS+I+ANA
Sbjct: 269 TSSTPDQSPQISKYELEYILNRRQKSFSVETAKPKKVKVIPPFRRLLSKLPTWSLIIANA 328

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV 394
           MHSWGFF++LSWMPIYF+ VY +DLR A+WFSAVPW++MA  GY  GL SDM+IQ GTSV
Sbjct: 329 MHSWGFFIVLSWMPIYFSSVYRVDLRHAAWFSAVPWALMAVMGYFAGLWSDMMIQSGTSV 388

Query: 395 TLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQY 454
           TLTRKI+Q IGF+ PG+ LIGL  AK+P + SAWLTLA G+KSFSHSGFLVNLQEIAP+Y
Sbjct: 389 TLTRKIMQCIGFVGPGLCLIGLATAKNPAIGSAWLTLAFGLKSFSHSGFLVNLQEIAPRY 448

Query: 455 SGVLHGI 461
           SGVLHGI
Sbjct: 449 SGVLHGI 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558820|ref|XP_002520433.1| Sialin, putative [Ricinus communis] gi|223540275|gb|EEF41846.1| Sialin, putative [Ricinus communis]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 312/443 (70%), Positives = 359/443 (81%), Gaps = 13/443 (2%)

Query: 30  FSSQFPYKSTNRKLFRNVSSNSGSV-GLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL--- 85
           F S+F   S ++ +       S S+   R +   R+R  VSS D  F   P  +E     
Sbjct: 35  FPSRFQAVSDSQNVSVKFQLQSDSIFKFRGVCSSRIR--VSSEDARFSSLPKREEEEEEE 92

Query: 86  -------APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGI 138
                    +F EFITSERVKV +MLALAL+LCNADRVVMSVAIVPLSLA+GW+RSFSGI
Sbjct: 93  EEEEEDKVASFREFITSERVKVAAMLALALSLCNADRVVMSVAIVPLSLANGWTRSFSGI 152

Query: 139 VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAV 198
           VQSSFLWGYL+SPIAGGTLVDYYGGK++M WGVALWSLATFLTP+AA+TSL  L+AMRA+
Sbjct: 153 VQSSFLWGYLISPIAGGTLVDYYGGKVVMGWGVALWSLATFLTPFAAETSLWVLMAMRAL 212

Query: 199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF 258
           +G+AEGVALP MNNM+ARWFP TERARAV IAM GF  G AIGL LSPILMSQ GIFGPF
Sbjct: 213 LGIAEGVALPCMNNMIARWFPPTERARAVGIAMAGFQLGCAIGLTLSPILMSQGGIFGPF 272

Query: 259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFR 318
           VIFGLSGFLWVLVWLSA SS+PDR  QISK ELEYIL++KQ+   + NK K   +IPPFR
Sbjct: 273 VIFGLSGFLWVLVWLSAISSSPDRSSQISKCELEYILKKKQQSFPVENKPKTTRIIPPFR 332

Query: 319 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGY 378
           RLLSKMPTW++IVAN+MHSWGFFVILSWMPIYFN +YH+DL++A+WFSAVPWSVMA  GY
Sbjct: 333 RLLSKMPTWALIVANSMHSWGFFVILSWMPIYFNSIYHVDLKRAAWFSAVPWSVMAVMGY 392

Query: 379 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 438
            GG+ SD LI+ G ++TLTRKI+QSIGF+ PGIALIGLT AKSP +ASAWLTLA+ +K+F
Sbjct: 393 FGGMWSDTLIRSGMTITLTRKIMQSIGFMGPGIALIGLTTAKSPTIASAWLTLAVALKAF 452

Query: 439 SHSGFLVNLQEIAPQYSGVLHGI 461
           SHSGFLVN QEIAPQYSGVLHGI
Sbjct: 453 SHSGFLVNFQEIAPQYSGVLHGI 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.806	0.726	0.547	8.7e-111
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.765	0.652	0.418	3e-78
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.824	0.742	0.409	9.3e-75
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.772	0.688	0.332	7.2e-52
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.700	0.652	0.341	1.4e-48
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.700	0.649	0.342	1.6e-47
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.700	0.652	0.320	1.6e-47
RGD|1311388	495	Slc17a5 "solute carrier family	0.700	0.652	0.323	2e-47
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.704	0.671	0.327	2.6e-47
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.713	0.672	0.327	3.3e-47

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 208/380 (54%), Positives = 275/380 (72%)

Query:    83 EALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSS 142
             EA+A   +  +  ER+KVV + A  + LCNADRVVMSVA+VPL+   GWS SF G+VQSS
Sbjct:    86 EAIAE--VRTMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSS 143

Query:   143 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLA 202
             FLWGY+ S + GG LVD YGGK ++AWGVALWSLAT LTPWAA  S LALL +RA  GLA
Sbjct:   144 FLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLA 203

Query:   203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG 262
             EGVA+P+M  +++RWFP  ERA AV I+M GF  GN +GL+L+P+++S  GI GPF++F 
Sbjct:   204 EGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFA 263

Query:   263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRRLL 321
               G LWV  W S  ++ P   P I++ EL  I  +  KP+       KP    P  R LL
Sbjct:   264 SLGLLWVSTWSSGVTNNPQDSPFITRSELRLI--QAGKPVQPSTISPKPN---PSLRLLL 318

Query:   322 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 381
             SK+PTW+II AN  ++WG+FV+LSWMP+YF  V++++L+QA+WFSA+PW+ MA +GY  G
Sbjct:   319 SKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAG 378

Query:   382 LLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHS 441
               SD LI+ G SVT  RKI+QSIGF+ PG++L+ L  AKSP  A+ ++T+A+ + SFS +
Sbjct:   379 AASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQA 438

Query:   442 GFLVNLQEIAPQYSGVLHGI 461
             GFL+N+Q+IAPQY+G LHGI
Sbjct:   439 GFLLNMQDIAPQYAGFLHGI 458

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 152/363 (41%), Positives = 230/363 (63%)

Query:   100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD 159
             +V +   +  LCN DRV MS+AI+P+S  + WS +  G++QSSF WGYL++ I GG   D
Sbjct:   134 IVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIWAD 193

Query:   160 YYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP 219
              +GGK+++ +GV  WS AT +TP AA   L  LL +RA +G+ EGVA+PAMNNM+++W P
Sbjct:   194 KFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIP 253

Query:   220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST 279
              +ER+R++A+   G   G+  GL  SP+L+++ G    F  FG  G +W L+WL    S+
Sbjct:   254 VSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSS 313

Query:   280 PDRHPQISKYELEYILREKQKPLLMGNK-HKPATVIPPFRRLLSKMPTWSIIVANAMHSW 338
             P   P +S+        E++K +L G+K  +P TVIP ++ +LSK P W++I+++  H+W
Sbjct:   314 PKDDPDLSE--------EEKKVILGGSKPREPVTVIP-WKLILSKPPVWALIISHFCHNW 364

Query:   339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTR 398
             G F++L+WMP Y+N V   +L ++     +PW  MA    +GG ++D L+ RG S+T  R
Sbjct:   365 GTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVR 424

Query:   399 KILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVL 458
             KI+QSIGF+ P   L  L+  K+P MA   +  + G  +FS SG   N Q+I P+Y+GVL
Sbjct:   425 KIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL 484

Query:   459 HGI 461
              G+
Sbjct:   485 LGL 487

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 162/396 (40%), Positives = 235/396 (59%)

Query:    68 VSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSL 127
             VS N+     +P+    + P + EF   +R  +V +   A  LCN DRV MS+AI+P+S 
Sbjct:    77 VSGNNDVVSDSPSS--IVLPWWEEF--PKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query:   128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
              +GW+ +  G++QSSF WGYL++ IAGG   D  GGK ++ +GV  WS+AT LTP AA  
Sbjct:   133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query:   188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI 247
              L  LL +RA +G+ EGVA+PAMNN++++W P  ER+R++A+   G   G+  GL  SP 
Sbjct:   193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query:   248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN- 306
             L+ Q G    F  FG  G +W+ +WL+   S+P   P +        L E++K L+  N 
Sbjct:   253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTL--------LPEERK-LIADNC 303

Query:   307 -KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWF 365
                +P   IP +R +LSK P W++I  +  H+WG F++L+WMP Y++ V   +L ++   
Sbjct:   304 ASKEPVKSIP-WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLL 362

Query:   366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA 425
             S  PW  MA +   GG ++D L+ RG SVT  RKI+Q+IGF+ P   L  L    SP MA
Sbjct:   363 SVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMA 422

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
                +  + G  +FS SG   N Q+IAP+YSGVL G+
Sbjct:   423 VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGL 458

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 123/370 (33%), Positives = 193/370 (52%)

Query:    96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
             +R K++   +LA  +CN D+V +S+AI+P+S   GWS S +G+VQSSF WGY +S + GG
Sbjct:    97 QRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGG 156

Query:   156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              L   +GG+ ++  GV  WS AT L P  A   +  L+  R +VG+ EGV+  A  +++A
Sbjct:   157 WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIA 215

Query:   216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
             R  P  ER+RAV    GG + G+ +GL+L+P ++        F +FGL G  W + +   
Sbjct:   216 RTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFL 275

Query:   276 TSSTPD-RHPQIS-KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 333
                    +  +IS  ++ E   +E+     +G+  K      P++        W++I  +
Sbjct:   276 NEEEVSYKGNEISTSHKSENATKEE-----LGSSLKEI----PWKSFFQSPAVWAMIYTH 326

Query:   334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS 393
                SWG +  LSW+P YF+    ++L +A+W S +P         L    +D LI  G  
Sbjct:   327 FCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVD 386

Query:   394 VTLTRKILQSIGFIAPGIA--LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 451
              T  RKI Q+I F+AP I   L  +     P      LT  + + SF+ SG     Q+I+
Sbjct:   387 TTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDIS 446

Query:   452 PQYSGVLHGI 461
             P+Y+ +L GI
Sbjct:   447 PEYASILLGI 456

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 114/334 (34%), Positives = 177/334 (52%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+++ I GG +    GGK+++ +GV   ++ T  TP AAD    
Sbjct:   103 WDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADFGFG 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
             AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I+  G   G  + L LS ++  
Sbjct:   163 ALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F  FGL G +W ++W+   S TP+ H  I+ YE EYIL   +  L   +  K 
Sbjct:   223 YMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQL---SSQKS 279

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAVP+
Sbjct:   280 VPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPY 335

Query:   371 SVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     L G  +D L  R    TL  R++   IG I P I L+  G        +A A
Sbjct:   336 LGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
             +LT++  +  F  SGF +N  +IAP Y+G+L GI
Sbjct:   395 FLTISTTLGGFCSSGFSINHLDIAPSYAGILLGI 428

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 115/336 (34%), Positives = 180/336 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W+    G +  SF +GY+++ I GG +    GGK+++ +G+   S+ T LTP AAD  + 
Sbjct:   103 WNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADFGVG 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI--AMGGFTSGNAIGLVLSPIL 248
             AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I  A+ G   G  + L LS I+
Sbjct:   163 ALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLSGII 222

Query:   249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                      F +FGL G +W ++W    S TPD H  IS YE EYIL   +  L   +  
Sbjct:   223 CFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYILSSLRNQL---SSQ 279

Query:   309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
             K    IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAV
Sbjct:   280 KSVPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAV 335

Query:   369 PWSVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
             P+        L G  +D L  +    TL  R++   IG   P + L+  G        +A
Sbjct:   336 PYFGCWVCMILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGFIGCDYS-LA 394

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
              A+LT++  +  F  SGF ++  +IAP Y+G+L GI
Sbjct:   395 VAFLTISTTLGGFCSSGFSISHLDIAPSYAGILLGI 430

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 107/334 (32%), Positives = 178/334 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+V+ I GG +    GGK+++  G+   S+ T  TP AAD  ++
Sbjct:   103 WDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADLGVV 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
              L+ +RA+ GL EGV  PAM+ M + W P  ER++ + I+  G   G  I L LS I+  
Sbjct:   163 TLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F +FG+ G +W ++W+   S TP+ H  IS YE EYI+   +  L   +  K 
Sbjct:   223 YMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK- 278

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                + P+  +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   ++++  + SA+P+
Sbjct:   279 ---VVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPY 335

Query:   371 SVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     L G  +D L ++   S    R+I   +G + P + L+  G        +A A
Sbjct:   336 FGCWLCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
             +LT++  +  F+ SGF +N  +IAP Y+G+L GI
Sbjct:   395 FLTISTTLGGFASSGFSINHLDIAPSYAGILLGI 428

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 108/334 (32%), Positives = 179/334 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+V+ I GG +    GGK+++  G+   ++ T  TP AAD  ++
Sbjct:   103 WDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADLGVV 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
             AL+ +RA+ GL EGV  PAM+ M + W P  ER++ + I+  G   G  I L LS I+  
Sbjct:   163 ALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F +FGL G +W ++W+   S TP+ H  IS YE EYI+   +  L   +  K 
Sbjct:   223 YMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK- 278

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                + P+  +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   ++++  + SA+P+
Sbjct:   279 ---VVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPY 335

Query:   371 SVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     + G  +D L ++   S    R+I   IG + P + L+  G        +A A
Sbjct:   336 FGCWLCMIVCGQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
             +LT++  +  F+ SGF +N  +IAP Y+G+L GI
Sbjct:   395 FLTISTTLGGFASSGFSINHLDIAPSYAGILLGI 428

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 110/336 (32%), Positives = 177/336 (52%)

Query:   129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS 188
             + W     G +  SF +GY+++ I GG L    GGK+++ +G+   S+ T LTP AAD  
Sbjct:    90 YSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADLG 149

Query:   189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 248
             +  L+A+RA+ GL EGV  PAM++M + W P  ER++ ++I+  G   G  + L LS ++
Sbjct:   150 VGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGLI 209

Query:   249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                      F IFG  G LW   W+   S  P+ H  IS+ E EYIL   +  L   +  
Sbjct:   210 CYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQL---STQ 266

Query:   309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
             K      P+R +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   D ++  + SA+
Sbjct:   267 KSV----PWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSAL 322

Query:   369 PWSVMAFTGYLGGLLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
             P+        L G ++D L ++   S    RK    IG I P + L+  G        +A
Sbjct:   323 PYFGCWLCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYE-LA 381

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
              A++T++  +  F  SG+ +N  +IAP Y+G+L GI
Sbjct:   382 VAFVTISTTLGGFCTSGYSINHLDIAPSYAGILLGI 417

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 111/339 (32%), Positives = 176/339 (51%)

Query:   126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA 185
             ++ + W+    G +  SF +GY+++ I GG L   YG K ++  G+    + T LTP AA
Sbjct:    93 AMVYDWNSETQGWILGSFFYGYIITQIPGGYLARKYGAKWLLGLGILCTVIFTLLTPLAA 152

Query:   186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS 245
             D     L+A+R + G+ EGV  PAM+ M A W P  ER+R + I+  G   G  + L LS
Sbjct:   153 DLGAGYLIAVRVLEGIGEGVTYPAMHAMWASWAPPLERSRLLTISYTGAQLGTVVALPLS 212

Query:   246 PILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMG 305
               +         F IFG  G LW  +W+   S++P  H +I++ E  YI+        + 
Sbjct:   213 GQICFYLDWTYVFYIFGAVGLLWFFLWICFVSNSPSSHKRITEAEKTYIMSS------LK 266

Query:   306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWF 365
             N+  P     P+  +   MP W+I+VA+  ++W F+ +L+ +P Y N V    ++Q    
Sbjct:   267 NELSPTQDYIPWTSIFKSMPLWAIVVAHFSYNWTFYTLLTLLPTYMNDVLGFSIQQNGML 326

Query:   366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVT-LTRKILQSIGFIAPGIALI--GLTAAKSP 422
             SA+P+        LGG L+D+L +R    T + RK    +G   P + L+  G T     
Sbjct:   327 SALPYLGCWLLALLGGQLADLLRERFLFRTVIVRKAFTVVGMAGPAVFLVAAGYTGCNY- 385

Query:   423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI 461
             ++A A+LT++  +   S SGF +N  +IAP Y+G+L GI
Sbjct:   386 ILAVAFLTISSSLGGISASGFNINHLDIAPSYAGILLGI 424

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W0H5	PHT43_ORYSJ	No assigned EC number	0.7061	0.8026	0.7129	yes	no
Q66GI9	ANTR4_ARATH	No assigned EC number	0.7247	0.9240	0.7992	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	461
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	6e-44
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-32
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-26
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-25
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	1e-15
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-11
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	4e-11
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-08
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	1e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-07
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	1e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	6e-06
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	2e-05
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	5e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	8e-05
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-04
TIGR00712	438	TIGR00712, glpT, glycerol-3-phosphate transporter	2e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-04
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	3e-04
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	0.003

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  159 bits (405), Expect = 6e-44
 Identities = 105/387 (27%), Positives = 172/387 (44%), Gaps = 35/387 (9%)

Query: 104 LALALALCN----ADRVVMSVAIV------------------PLSLAHGWSRSFSGIVQS 141
           L+  L +CN    A R+ +S+ +V                   L      +  +SG +Q 
Sbjct: 20  LSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQG 79

Query: 142 SFLWGYLVSPIAGGTLVDYYGGKIIMAW----GVALWSLATFLTPWAADTSLLALLAMRA 197
             L  +    I     V Y  GK +  W    G+ L S+ + + PWAA   +  ++  R 
Sbjct: 80  LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRV 139

Query: 198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFG 256
           + GLA+G   PA + ++ +W P  ER+R + ++  GF  G  I L +S  L  S  G   
Sbjct: 140 IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM 199

Query: 257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP 316
            F +FG+ G  W L+W    +  P  HP ISK+E +YI    Q       +  P   IP 
Sbjct: 200 IFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIP- 258

Query: 317 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFT 376
                  +P W+I  A   H W + ++ +++P + ++V  +  ++    S++P+      
Sbjct: 259 -----KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLC 313

Query: 377 GYLGGLLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI-GLTAAKSPVMASAWLTLAIG 434
               G L+D L    T S+T  RKI   IG + PGI        + +  +    LTLA  
Sbjct: 314 SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANA 373

Query: 435 MKSFSHSGFLVNLQEIAPQYSGVLHGI 461
           + S   +G L+N  ++AP++ G + GI
Sbjct: 374 VSSGPLAGVLINSLDLAPRFLGFIKGI 400

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  126 bits (319), Expect = 2e-32
 Identities = 88/338 (26%), Positives = 144/338 (42%), Gaps = 13/338 (3%)

Query: 106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI 165
           L   +   DR  +S A   L    G S +  G V S+F WGY+V    GG L+D +G + 
Sbjct: 1   LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60

Query: 166 IMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERAR 225
            +A  + +W + T L   A   + ++L  +R ++G AE    P +  +VA WFP +ERA 
Sbjct: 61  TLAVFIVIWGVFTGLQ--AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERAT 118

Query: 226 AVAIAMGGFTSGNAIGLVL-SPILMSQAGIFG---PFVIFGLSGFLWVLVWLSATSSTPD 281
           AV+I    F S   +G ++  P++      F     F+I G+ G +W ++WL      P 
Sbjct: 119 AVSI----FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL-KFIPDPP 173

Query: 282 RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF 341
           +  +    E +YI            K          + LL     W + +   + + G  
Sbjct: 174 QKAKWLTEEEKYI-VVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLG 232

Query: 342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKIL 401
             L+W P Y      + + +A + +++P  V      LGG LSD+L++RG S+   RK  
Sbjct: 233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK-T 291

Query: 402 QSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFS 439
             I  +   + +        P  A A + L        
Sbjct: 292 AIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAG 329

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  108 bits (271), Expect = 5e-26
 Identities = 85/356 (23%), Positives = 145/356 (40%), Gaps = 61/356 (17%)

Query: 101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY 160
           + +L L   L   DR ++S A+  L+   G S S +G++ S+F  GY +  +  G L D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 161 YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ 220
           +G + ++  G+ L++L + L  +A  +SL  LL  R ++GL  G   PA   ++A WFP 
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 280
            ER RA+ +   GF  G  +G +L  +L    G    F+I  + G L  L+         
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL-------- 170

Query: 281 DRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF 340
                                                  L        + +A  + S+G+
Sbjct: 171 ---------------------------------------LFLLRLLLLLALAFFLLSFGY 191

Query: 341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKI 400
           + +L+++P+Y   V  +   +A    ++          LGGLLSD L          R++
Sbjct: 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG--------RRRL 243

Query: 401 LQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSG 456
           L  IG +   + L+ L  A S       L +A+ +  F        L  +A + + 
Sbjct: 244 LLLIGLLLAALGLLLLALAPSLA----LLLVALLLLGFGLGFAFPALLTLASELAP 295

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  106 bits (267), Expect = 1e-25
 Identities = 73/333 (21%), Positives = 136/333 (40%), Gaps = 28/333 (8%)

Query: 103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG 162
           +   A        ++     + L+   G S +  G++ ++F  GY ++    G L D +G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 163 GKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE 222
            + ++  G+ L++L   L  +A+  SL  LL +R + GL  G   PA   ++A WFP  E
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 223 RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR 282
           R RA+ +   GF  G A+G +L  +L S  G    F+I  +   L  ++           
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL-------- 170

Query: 283 HPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV 342
                      + R   +        +    + P  +LL + P   +++A  +  + FF 
Sbjct: 171 ----------LLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFA 220

Query: 343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 402
           +L+++P+Y   V  +    A     +   + A    L G LSD L +R       R++L 
Sbjct: 221 LLTYLPLY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR-------RRLLL 272

Query: 403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGM 435
           ++  +      + L +     +      L +G 
Sbjct: 273 ALLLLILAALGLALLSLTESSLWLLVALLLLGF 305

Length = 346

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 66/336 (19%), Positives = 123/336 (36%), Gaps = 21/336 (6%)

Query: 109 ALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA 168
           A     R   ++A+  L    G S++  G++ SSF   Y +S    G++ D    ++ + 
Sbjct: 5   AAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLP 64

Query: 169 WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVA 228
            G+ L ++      ++  TSL  + A+ A+ G+ +G+  P     V +WF ++ER   V+
Sbjct: 65  IGLILCAIVNLFFGFS--TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVS 122

Query: 229 IAMGGFTSGNAIGLVLSPILMSQAGIFGP----FVIFGLSGFLWVLVWLSATSSTPDRHP 284
                   G  +   L P+++            F++ G+   +  L+       +P +  
Sbjct: 123 FWNCSHNVGGGL---LPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP-QSC 178

Query: 285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL 344
            +   E                +     +    + +L     W I +           IL
Sbjct: 179 GLPPAEEMPNEEPDGDAEKKEEELTKKQIF--LQYVLLNKVLWYISLGYVFVYVVRTGIL 236

Query: 345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTG-YLGGLLSDMLIQ-RGTSVTLTRKILQ 402
            W P+Y          +ASW   +   +    G  L G LSD L   R   + +    L 
Sbjct: 237 DWSPLYLTQEKGFSKEKASWAFTLY-ELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMAL- 294

Query: 403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 438
               I   + +  L  A +P+M    L  A+G   +
Sbjct: 295 ----IIVSLLVYWLNPAANPLMDLICL-FALGFLVY 325

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 13/265 (4%)

Query: 95  SERVKVVSMLALALALCN-ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIA 153
           S       +L+  + L +  D   M  A   +S   G      G + S+ L G     + 
Sbjct: 12  SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALF 71

Query: 154 GGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 213
            G L D  G + ++ W + L+S+ T L   A  T++  LL +R + GL  G  +P +N +
Sbjct: 72  FGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNAL 129

Query: 214 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL-SGFLWVLVW 272
           V+ + P+  R  AV +   G+  G A+G  L+  L+   G    F + G+    L +L+ 
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189

Query: 273 LSATSS---TPDRHPQISKYELEYILREKQKPLLMG---NKHKPATVIPPFRRLLSK--- 323
                S      + P+  +  +  I  + Q          K    T    F+ L      
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249

Query: 324 MPTWSIIVANAMHSWGFFVILSWMP 348
             T  + +   M   G + + +W+P
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWLP 274

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 64/289 (22%), Positives = 110/289 (38%), Gaps = 42/289 (14%)

Query: 119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT 178
           ++A+  L    G S++  GI+ S+F   Y VS    G L D    +  MA+G+ L ++  
Sbjct: 49  NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108

Query: 179 FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN 238
            L  +    SL     +  + G  +G+  P     +  WF + ER    +I    + + +
Sbjct: 109 IL--FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI----WNTSH 162

Query: 239 AIGLVLSPILMSQAGIF------GPFVIFGLSGFLWVLVWLSATSSTPDR--HPQISKYE 290
            IG  L+P++   A           F   G+   +  L+ L      P     P I +Y 
Sbjct: 163 NIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYR 222

Query: 291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPT----WSIIVANAMHSWGFFV---- 342
            + +   ++         K    +  ++  +  +      W + +AN       FV    
Sbjct: 223 GDPLEIYEE--------EKENEGLTAWQIFVKYVLKNKLIWLLALAN------VFVYVVR 268

Query: 343 --ILSWMPIYFNFVYHIDLRQASW-FSAVPWSVMAFTG-YLGGLLSDML 387
             I  W P+Y + V    L +A+W  S    +     G  L G LSD L
Sbjct: 269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVA--GLPGTLLAGWLSDKL 315

Length = 448

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR 196
           G++ + +  G L+     G L D +G K ++  G+ ++ L+T +   A  +++  L+  R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF--ALSSNITVLIIAR 58

Query: 197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG 256
            + G     AL A   ++A  +P  ER  A+ +   G   G  +G  L  +L    G   
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 257 PFVIFGL 263
           PF+   +
Sbjct: 119 PFLFLAI 125

Length = 141

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL 173
           DR+ +  A + +    G S +  G+  + F   Y++  I    ++   G +  +A  + L
Sbjct: 23  DRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL 82

Query: 174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGG 233
           W +A+  T +A  T   +L  +R +VG+AE   LP +   +  WFP   RARA A+ M  
Sbjct: 83  WGIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA 140

Query: 234 FTSGNAIGLVLSPILMSQAGIF---GPFVIFGLSGF----LWVLVWLSATSSTPDRHPQI 286
                A+GL+LS  +++  G+    G   +F L GF    L V+ W      +PD+   +
Sbjct: 141 MPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF-WLDDSPDKAKWL 199

Query: 287 SKYE 290
            + +
Sbjct: 200 DEED 203

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK-IIMAWGVALW 174
            +++   + L    G S + +G++ S F  G ++  + GG L D  G + +++  G+ L 
Sbjct: 193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLA 252

Query: 175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGF 234
           +L   L   A   +LL +     ++G   G A PA+  + +   P   R  A  +     
Sbjct: 253 ALGLLLLALAPSLALLLVAL--LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFG 310

Query: 235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL 273
           + G A+G +L+ +L+   G  G F+I      L  L+ L
Sbjct: 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 55/284 (19%), Positives = 101/284 (35%), Gaps = 32/284 (11%)

Query: 155 GTLVDYYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAMRAVVGLAEG---VALPAM 210
           G L D +GG+      + L  +      +A    S   LL +  ++GLA     V +P  
Sbjct: 70  GFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMP-- 127

Query: 211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL 270
               + +FP+ ++  A+ IA  G   G A+  +++P++    G      + G+      +
Sbjct: 128 --NASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
             + A     D              R   KP L              + + S   TW + 
Sbjct: 185 AAVLAWLGMNDVPE----------HRASVKPQLP----------AQLKAVFSNKDTWLLS 224

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
           +       GF    +++P+Y    + +    A   + +   + A    LGG LSD +   
Sbjct: 225 LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--G 282

Query: 391 GTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG 434
           G  VTL   +  ++      + L G        +    + LA+ 
Sbjct: 283 GRRVTLAVFVGMALAAALLSLFLTG-FGHGGSFVVFVAVFLALF 325

Length = 417

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
           A   S   SG++ S F  G L+  +  G L D +G K  +  G  L+ +   L  +A   
Sbjct: 40  ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99

Query: 188 SLLALLAMRAVVGLAEGVA 206
           S   L+  R +VGL  G  
Sbjct: 100 SFYMLIVGRVIVGLGVGGI 118

Length = 449

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 59/297 (19%), Positives = 100/297 (33%), Gaps = 31/297 (10%)

Query: 93  ITSERVKVVSMLALALALC----NADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYL 148
             +   K + +  LALAL          V    + P++   G S   +G + +++  G  
Sbjct: 3   TPATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVA 62

Query: 149 VSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALP 208
           +       L      + ++   +AL+ ++  L+  A   S   LL  RA+ GLA GV   
Sbjct: 63  LGAPLLALLTGRLERRRLLLGLLALFIVSNLLS--ALAPSFAVLLLARALAGLAHGVFWS 120

Query: 209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW 268
               + AR  P  +R RA+A+   G T    +G+ L   L     +FG    F     L 
Sbjct: 121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL---GQLFGWRATFLAIAVLA 177

Query: 269 VLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWS 328
           +L  L      P                                 +    RLL +     
Sbjct: 178 LLALLLLWKLLPPS----------------------EISGSLPGPLRTLLRLLRRPGVLL 215

Query: 329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
            ++A  +   G F + +++  +   V    +   S               LGG L+D
Sbjct: 216 GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD 272

Length = 394

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 3/141 (2%)

Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP 182
            PL    G   +   I  +  L G  +S   GG L D +G + +   G  L+ L      
Sbjct: 27  PPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY- 85

Query: 183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL 242
            A   SL AL     +     G+A     N   +WFP  +R  A  I +GG+  G+ I  
Sbjct: 86  -AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILS 143

Query: 243 VLSPILMSQAGIFGPFVIFGL 263
            L   +++  G+   F+  G+
Sbjct: 144 PLITSVINLEGVPAAFIYMGI 164

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 124 PLSLAHGWSRSFSGIVQSSFLWGYLVS----PIAGGTLVDYYGGKIIMAWGVALWSLATF 179
           P+   HGW R+    +Q +F    +      PI  G  VD YG +I++ +G  +  L   
Sbjct: 28  PIDATHGWGRA---AIQVAFTLFVVTETWLVPI-EGWFVDKYGPRIVVMFGGIMCGLGWV 83

Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA 239
           L  +A   SL AL A   V G+  G           +WFP  +R  A  +   GF +G A
Sbjct: 84  LNAYA--DSLPALYAAAVVAGIGAGAVYGTCVGNALKWFPD-KRGLAAGLTAAGFGAGAA 140

Query: 240 IGLVLSPILMSQAGIFGPFVIFGL 263
           + +V    ++  +G    F+ FGL
Sbjct: 141 LTVVPIAAMIKVSGYQAAFMYFGL 164

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 1/165 (0%)

Query: 78  APNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSG 137
            P   E      +          V  L LAL L       +   +       G S   +G
Sbjct: 181 RPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAG 240

Query: 138 IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT-SLLALLAMR 196
           ++         +  +  G L D  G +  +   + L  LA       + T S L LL   
Sbjct: 241 LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL 300

Query: 197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG 241
            ++G   G+  PA+N +V+   P+ ER  A  +     + G A+G
Sbjct: 301 LLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 12/192 (6%)

Query: 104 LALALALCNA-------DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           LAL + LC         D     VA   ++   G   +  G   S+ + G L   + GG 
Sbjct: 13  LALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGR 72

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 216
           L D  G K I+   VAL+ L +  T  A D     LL  R + G+  G ALP +  + + 
Sbjct: 73  LADRIGRKRILIVSVALFGLFSLATAQAWDFPS--LLVARLLTGVGLGGALPNLIALTSE 130

Query: 217 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV---LVWL 273
                 R  AV++   G   G A+  V+  +    A     F + G+   L V   + WL
Sbjct: 131 AVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWL 190

Query: 274 SATSSTPDRHPQ 285
             + +       
Sbjct: 191 PESRAFAQAAGA 202

Length = 406

>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 24/254 (9%)

Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-- 180
           +P  +  G+S+   G   S+    Y  S    G++ D    ++ +  G+ L +    L  
Sbjct: 50  MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG 109

Query: 181 -TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI-----AMGGF 234
             PWA  +S+  +  +  + G  +G+  P     +  W+ Q+ER   V+I      +GG 
Sbjct: 110 FVPWAT-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG 168

Query: 235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR--HPQISKYELE 292
                + L ++      A ++ P +   +       +       TP     P I +Y  +
Sbjct: 169 IPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAM----MRDTPQSCGLPPIEEYRND 224

Query: 293 YI--LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           Y     EK +  L   +     V+P   +LL     W I +AN       + +L W P Y
Sbjct: 225 YPDDYNEKAEQELTAKEIFMQYVLP--NKLL-----WYIAIANVFVYLLRYGVLDWSPTY 277

Query: 351 FNFVYHIDLRQASW 364
              V H  L ++SW
Sbjct: 278 LKEVKHFALDKSSW 291

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 147 YLVSPIAG---GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE 203
           ++  P  G   G L D +G K +M W +  +S+ T L+  A+   +L L   R +VG+  
Sbjct: 63  FIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTL--SRFIVGMGM 120

Query: 204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263
                  +      +P+  +++A A  + GF  GN I     P      G    F +   
Sbjct: 121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV--- 177

Query: 264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRR 319
            G L VL+ +   +  P+     SK   E  L  K K           ++   F R
Sbjct: 178 -GLLPVLLVIYIRARAPE-----SKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNR 227

Length = 426

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 54/298 (18%), Positives = 105/298 (35%), Gaps = 42/298 (14%)

Query: 155 GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           G LVD +G +      + L ++       A   S   LL +R  +G+A G     M   +
Sbjct: 58  GFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV-QSYSVLLLLRLFIGIAGGSFASCM-PWI 115

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAI-GLVLSPIL--------MSQAGIFGPFVIFGLSG 265
           + +FP+  +  A+ +A G    G  +   V+ PI+        +     +G   +   +G
Sbjct: 116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAG 175

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-----PPFRRL 320
            L +   L          P             K     +  K    +V         +  
Sbjct: 176 ILLLPALLIFFVG--ADTP-----------PGKPATGKLSFKGARWSVGTGALGDQLKVF 222

Query: 321 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 380
             +  TW + +  ++    F  + S   ++F   + +    A  ++++   + +    LG
Sbjct: 223 RDRH-TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLG 281

Query: 381 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 438
           G +SD L          RK+L S   +A G  L+ L      +++   L + I +   
Sbjct: 282 GAISDRLGGA-------RKLLMSFLGVAMGAFLVVLG-----LVSPLSLAVFIVLFVA 327

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 7/131 (5%)

Query: 130 GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSL 189
           G    F+ ++  +   G L+  I    LV  +G K +   G+ L ++   L  +    S+
Sbjct: 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSV 327

Query: 190 LALLAMRAVVGLAEGVALPAMNNMVA------RWFPQTERARAVAIAMGGF-TSGNAIGL 242
           + ++    + G+  G+A P    MVA       W     R   V   M  F   G A+  
Sbjct: 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG 387

Query: 243 VLSPILMSQAG 253
            +   ++   G
Sbjct: 388 FIPGWILGAIG 398

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
PRK11043	401	putative transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK03893	496	putative sialic acid transporter; Provisional	99.98
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.98
PRK05122	399	major facilitator superfamily transporter; Provisi	99.98
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
TIGR00805	633	oat sodium-independent organic anion transporter.	99.97
PRK12382	392	putative transporter; Provisional	99.97
TIGR00898	505	2A0119 cation transport protein.	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.96
PRK10054	395	putative transporter; Provisional	99.96
PRK11010	491	ampG muropeptide transporter; Validated	99.96
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.96
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.95
KOG0254	513	consensus Predicted transporter (major facilitator	99.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.95
KOG0569	485	consensus Permease of the major facilitator superf	99.95
PRK11902	402	ampG muropeptide transporter; Reviewed	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.94
PTZ00207	591	hypothetical protein; Provisional	99.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.94
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.94
KOG2615	451	consensus Permease of the major facilitator superf	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.94
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.93
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.92
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.92
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.89
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.88
KOG2563	480	consensus Permease of the major facilitator superf	99.87
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.86
PRK09669	444	putative symporter YagG; Provisional	99.86
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.85
PF13347	428	MFS_2: MFS/sugar transport protein	99.83
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.83
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.82
PRK10429	473	melibiose:sodium symporter; Provisional	99.82
PRK09848	448	glucuronide transporter; Provisional	99.81
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.79
KOG3626	735	consensus Organic anion transporter [Secondary met	99.79
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.79
PRK11462	460	putative transporter; Provisional	99.78
COG2211	467	MelB Na+/melibiose symporter and related transport	99.77
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.75
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.73
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.72
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.71
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.7
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.69
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.67
PRK05122	399	major facilitator superfamily transporter; Provisi	99.67
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.67
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.66
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.66
PRK09528	420	lacY galactoside permease; Reviewed	99.66
PRK10642	490	proline/glycine betaine transporter; Provisional	99.65
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.64
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.64
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.64
PRK15011	393	sugar efflux transporter B; Provisional	99.63
PRK12382	392	putative transporter; Provisional	99.62
PRK10489	417	enterobactin exporter EntS; Provisional	99.61
PRK09874	408	drug efflux system protein MdtG; Provisional	99.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.61
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.59
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.59
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.59
PRK03633	381	putative MFS family transporter protein; Provision	99.58
PRK03545	390	putative arabinose transporter; Provisional	99.57
TIGR00893	399	2A0114 d-galactonate transporter.	99.57
PRK03893	496	putative sialic acid transporter; Provisional	99.57
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.55
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.55
PRK03699	394	putative transporter; Provisional	99.55
PRK09705	393	cynX putative cyanate transporter; Provisional	99.54
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.53
PRK11663	434	regulatory protein UhpC; Provisional	99.53
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.53
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.52
TIGR00891	405	2A0112 putative sialic acid transporter.	99.49
PRK12307	426	putative sialic acid transporter; Provisional	99.49
PRK11010	491	ampG muropeptide transporter; Validated	99.49
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.48
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.48
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.47
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.47
PRK09952	438	shikimate transporter; Provisional	99.46
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.46
TIGR00900	365	2A0121 H+ Antiporter protein.	99.46
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.44
TIGR00895	398	2A0115 benzoate transport.	99.44
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.44
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.42
PRK15075	434	citrate-proton symporter; Provisional	99.4
PRK10504	471	putative transporter; Provisional	99.4
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.39
PRK10054	395	putative transporter; Provisional	99.39
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.39
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.38
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.38
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.38
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.38
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.38
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.37
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.36
PRK11902	402	ampG muropeptide transporter; Reviewed	99.34
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.33
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.33
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.32
PRK10091	382	MFS transport protein AraJ; Provisional	99.32
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.31
PLN00028	476	nitrate transmembrane transporter; Provisional	99.31
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.3
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.3
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.3
TIGR00898	505	2A0119 cation transport protein.	99.29
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.27
PRK09848	448	glucuronide transporter; Provisional	99.26
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.26
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.25
KOG0569	485	consensus Permease of the major facilitator superf	99.23
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.23
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.22
PRK10133	438	L-fucose transporter; Provisional	99.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.2
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.19
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.19
PRK09669	444	putative symporter YagG; Provisional	99.17
PRK10429	473	melibiose:sodium symporter; Provisional	99.16
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.16
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.16
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.15
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.15
TIGR00901	356	2A0125 AmpG-related permease.	99.15
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.15
KOG0637	498	consensus Sucrose transporter and related proteins	99.15
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.14
PRK11043	401	putative transporter; Provisional	99.14
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.13
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.11
COG0477	338	ProP Permeases of the major facilitator superfamil	99.11
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.1
PF13347	428	MFS_2: MFS/sugar transport protein	99.09
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.06
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.04
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.01
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.99
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.99
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.96
PRK11462	460	putative transporter; Provisional	98.95
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.95
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.95
KOG3762	618	consensus Predicted transporter [General function	98.93
COG2211	467	MelB Na+/melibiose symporter and related transport	98.89
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.87
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.86
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.84
KOG3810	433	consensus Micronutrient transporters (folate trans	98.82
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.81
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.8
KOG2532	466	consensus Permease of the major facilitator superf	98.77
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.74
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.72
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.69
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.67
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.67
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.63
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.63
KOG3762	618	consensus Predicted transporter [General function	98.62
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.62
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.59
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.51
KOG0254	513	consensus Predicted transporter (major facilitator	98.48
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.47
PTZ00207	591	hypothetical protein; Provisional	98.46
KOG2533	495	consensus Permease of the major facilitator superf	98.39
PF12832	77	MFS_1_like: MFS_1 like family	98.39
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.28
KOG2615	451	consensus Permease of the major facilitator superf	98.23
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.21
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.2
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.17
PF12832	77	MFS_1_like: MFS_1 like family	98.07
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.04
COG3202	509	ATP/ADP translocase [Energy production and convers	98.02
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.95
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.74
KOG3097	390	consensus Predicted membrane protein [Function unk	97.74
PRK03612	521	spermidine synthase; Provisional	97.74
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.72
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.64
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.53
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.49
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.47
KOG3880	409	consensus Predicted small molecule transporter inv	97.4
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.39
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.37
KOG2563	480	consensus Permease of the major facilitator superf	97.35
TIGR00805	633	oat sodium-independent organic anion transporter.	97.35
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.33
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.2
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.15
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.95
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.59
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.34
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.97
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.78
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.73
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.97
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	93.97
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.6
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.31
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	92.96
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	92.44
KOG3880	409	consensus Predicted small molecule transporter inv	92.36
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.68
COG0477	338	ProP Permeases of the major facilitator superfamil	91.15
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	91.13
KOG0637	498	consensus Sucrose transporter and related proteins	90.63
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	90.55
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	89.96
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	89.26
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	87.99
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	87.8
COG4262	508	Predicted spermidine synthase with an N-terminal m	87.03
PRK03612	521	spermidine synthase; Provisional	85.39
KOG3626	735	consensus Organic anion transporter [Secondary met	84.78
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	82.81
KOG3810	433	consensus Micronutrient transporters (folate trans	82.43
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	80.65

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-39  Score=290.49  Aligned_cols=358  Identities=20%  Similarity=0.245  Sum_probs=289.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      -++.|+.+++.+++++...++.+..++.+.|.+.++.++|.+|+|++.+++.+.+.++.++.|.++||.+.|+.+..+++
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHH--HHHHh
Q 012519          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS--PILMS  250 (461)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l~~  250 (461)
                      +.++..++.+++  ++++.+.+..+++|+.+|.-+|.+...++.|+|+++||+..++++++.++|..+.|++.  +++..
T Consensus       103 lsai~nil~Gfs--~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         103 LSAIVNILFGFS--PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            999999999999  99999999999999999999999999999999999999999999999999999999999  89998


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCC-CCCCChhHHHHhcchhhHHH
Q 012519          251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHK-PATVIPPFRRLLSKMPTWSI  329 (461)
Q Consensus       251 ~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  329 (461)
                      +.+||..|++.++++++..++.++..+|+|++..-.+.++......+..+   .+++.+ -.....-++.+++||.+|.+
T Consensus       181 ~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~---~~~~~~~ls~~~i~~~YVL~Nk~iW~l  257 (448)
T COG2271         181 HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYE---EEKENEGLTAWQIFVKYVLKNKLIWLL  257 (448)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhh---hhccCCCccHHHHHHHHHHcChHHHHH
Confidence            99999999999999999999999999999987643332222110000000   001111 01111235678999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHH
Q 012519          330 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP  409 (461)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  409 (461)
                      ++..++.+..-+++..|.|.|+.|..|+|...+++..+.+-.++++|.+++||++||+.+.+      |.....+.+++.
T Consensus       258 a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~i  331 (448)
T COG2271         258 ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLI  331 (448)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999987442      234444555555


Q ss_pred             HHHHHHHhccChh-HHHHHHHHHHHHHHhhhh-hchhHhhhhhcccc-cccccCC
Q 012519          410 GIALIGLTAAKSP-VMASAWLTLAIGMKSFSH-SGFLVNLQEIAPQY-SGVLHGI  461 (461)
Q Consensus       410 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~-~g~~~gl  461 (461)
                      .++++.+...++. ......++...++.-.+. -..-....|..|++ .|++.|+
T Consensus       332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf  386 (448)
T COG2271         332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGF  386 (448)
T ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhch
Confidence            5555555444433 222222222222222222 23344556888865 8999885

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.7e-38  Score=284.11  Aligned_cols=329  Identities=22%  Similarity=0.239  Sum_probs=271.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      +..+..+..+.++.|..+.........+|++.+|+|+|..++|++.+.|.++.++++++...+.||+.||++++..+.++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            34466778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      .++.++++++  +||+.++++|++.|+..|..++...++..+..|++||++++++...+..++.++|.+++.++.+.+||
T Consensus        89 i~~n~l~alA--p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW  166 (394)
T COG2814          89 IVSNLLSALA--PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW  166 (394)
T ss_pred             HHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHH
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (461)
                      |++|++.+.++++..+..+...|  |++.+                       .+++....+..+++|+|.++...+..+
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~~-----------------------~~~~~~~~~~~~~l~~p~v~~~l~~t~  221 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP--PSEIS-----------------------GSLPGPLRTLLRLLRRPGVLLGLLATF  221 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC--CccCC-----------------------CCCCcchhHHHHHhcCchHHHHHHHHH
Confidence            99999999999999988888888  22111                       111112223458899999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHH
Q 012519          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (461)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (461)
                      +...+.+..++|+..++++..|++....++.+..+++++++|..++|++.|| +.+         ..+.....+.++.++
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~---------~~l~~~~~l~a~~~l  291 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR---------RALIAALLLLALALL  291 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch---------hHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 544         122333333333333


Q ss_pred             HHhcc-ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          415 GLTAA-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       415 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      .+.+. .+.+...+..++.++..............+..|+.++.+.+
T Consensus       292 ~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~s  338 (394)
T COG2814         292 ALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGS  338 (394)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHH
Confidence            33333 33433333344433333333334444455555676665543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=6.4e-37  Score=293.81  Aligned_cols=293  Identities=20%  Similarity=0.242  Sum_probs=243.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      +.+|..+.++++.+++++++....+...|.+.+|+|++..++|++.+++.+++++++++.|++.||+|||+++..++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 012519          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS----  250 (461)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----  250 (461)
                      +++.++++++  +|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++++++++.+    
T Consensus        84 ~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        84 GIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHh--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999  9999999999999999999999999999999999999999999999999999999999998874    


Q ss_pred             --hcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCc---cccCCCC--CCC-CCChhHHHHhc
Q 012519          251 --QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKP---LLMGNKH--KPA-TVIPPFRRLLS  322 (461)
Q Consensus       251 --~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~-~~~~~~~~~~~  322 (461)
                        ..|||+.|++.+++.++..++.+++.||+|++.+...+++.+...+.....   .......  +.+ .....+++++ 
T Consensus       162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (412)
T TIGR02332       162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-  240 (412)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-
Confidence              369999999999888877777777788888765443333322221111100   0000000  000 1112344444 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHh-hCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFV-YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      +|.+|...+..++....++.+.+|+|.|+++. .+++..+++.+.....++.+++.++.|+++||+++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r  309 (412)
T TIGR02332       241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER  309 (412)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence            68888888888888888999999999999883 367888889999999999999999999999999877

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.1e-36  Score=285.71  Aligned_cols=329  Identities=35%  Similarity=0.659  Sum_probs=297.3

Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhc
Q 012519          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (461)
Q Consensus       126 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  205 (461)
                      ..+++.+..+.+++.+.+..|+.+++++.|+++||+|.|+++..+.++.++++++..++...+++.+++.|++||++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            34688899999999999999999999999999999999999999999999999999888556778889999999999999


Q ss_pred             hhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 012519          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP  284 (461)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (461)
                      .+|+...+.++|.|++||++..++..++..+|.+++-+++|++.+. +||+++|++.++++++..++++.+..|+|.+++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccch
Q 012519          285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW  364 (461)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  364 (461)
                      ...++|.++..+...+..      .++....|++++++++.+|.+++..++.....+.+..|.|.|+++++|++..+.|+
T Consensus       225 ~is~~El~~I~~~k~~~~------~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~  298 (466)
T KOG2532|consen  225 NISEKELKYIEKGKSEAH------VKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGF  298 (466)
T ss_pred             CCCHHHHHHHHhcccccc------cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhH
Confidence            999999988876554321      11115679999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccCh--hHHHHHHHHHHHHHHhhhhhc
Q 012519          365 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--PVMASAWLTLAIGMKSFSHSG  442 (461)
Q Consensus       365 ~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  442 (461)
                      +.++..+...+..+++|.++||+.+|....+..||..-.++....+++++.+.+.+.  .+..+.++.+..++.++..+.
T Consensus       299 ~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~G  378 (466)
T KOG2532|consen  299 LSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISG  378 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhh
Confidence            999999999999999999999998877778888899999999999999988887763  344566666677888888888


Q ss_pred             hhHhhhhhcccccccccC
Q 012519          443 FLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       443 ~~~~~~~~~p~~~g~~~g  460 (461)
                      ......+..|++.+.++|
T Consensus       379 f~~~~~~~apq~a~~l~g  396 (466)
T KOG2532|consen  379 FYKNHQDIAPQHAGFVMG  396 (466)
T ss_pred             hHhhhhhccchHHHHHHH
Confidence            888888889998887765

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=2.1e-36  Score=295.40  Aligned_cols=292  Identities=16%  Similarity=0.098  Sum_probs=238.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  173 (461)
                      .+..+.++.++++++++.+.++..+++..|.+.+|+|++..+.|++.+++.+++.+++++.|+++||+|||+++.+++++
T Consensus        24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~  103 (467)
T PRK09556         24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL  103 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence            44467778888999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhhc-----cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          174 WSLATFLTPW-----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       174 ~~i~~~~~~~-----~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      ++++.++.++     +  ++++.+++.|+++|++.+...+...++++||+|+++||+++|++..+.++|.++++++..++
T Consensus       104 ~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        104 SAICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            7777665443     6  89999999999999999999999999999999999999999999999999999999998877


Q ss_pred             Hhhc---CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChh-HHHHhcch
Q 012519          249 MSQA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP-FRRLLSKM  324 (461)
Q Consensus       249 ~~~~---gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  324 (461)
                      .+..   +||..|.+.+++.++..++.+++.+++|++.+..++++.  ..+..... ....+.++...... .+..+++|
T Consensus       182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  258 (467)
T PRK09556        182 ANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEI--FGEPISEE-DKETESTDMTKWQIFVEYVLKNP  258 (467)
T ss_pred             HHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhc--ccCccchh-hhccccccCcHHHHHHHHHHcCh
Confidence            7653   699999998888887777777777777765433222210  00000000 00000000011111 23478999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      .+|...+..++....++....|+|.|+++.+|++..++++......++.+++.++.|+++||+++|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r  324 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR  324 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999998888888999999999988999999999999999999999999999999999987

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.5e-35  Score=283.30  Aligned_cols=327  Identities=15%  Similarity=0.128  Sum_probs=252.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      .++|..+..+.++.+..........+.+|.+.+++|.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            34455555555555554444445666789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      ++++++++++  +|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..+||++++.+.+++||
T Consensus        85 ~~~~~~~~~~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw  162 (390)
T PRK03545         85 IASHVLSALA--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW  162 (390)
T ss_pred             HHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence            9999999999  99999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHH
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (461)
                      |+.|++.++++++..+..+...|+.+++++                           ...++.++.+|+|.++...+..+
T Consensus       163 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~  215 (390)
T PRK03545        163 RTTFLAIGGGALITLLLLIKLLPLLPSEHS---------------------------GSLKSLPLLFRRPALVSLYLLTV  215 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---------------------------chHHHHHHHHhCcHHHHHHHHHH
Confidence            999999998887776666665555432110                           01124567889999887777666


Q ss_pred             HHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHH
Q 012519          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (461)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (461)
                      +.....+....+.+.|+++.+|++..+++.+.....+++++++++.|++.||+++|        ....  +....+....
T Consensus       216 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~--------~~~~--~~~~~~~~~~  285 (390)
T PRK03545        216 VVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG--------FLLI--AIALLLVCLL  285 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh--------HHHH--HHHHHHHHHH
Confidence            66666676778888888887899999999999999999999999999999999866        1222  2222222222


Q ss_pred             -HHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          415 -GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       415 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                       .....++.+......++.+.......+.......+..|+.+|+++|
T Consensus       286 ~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  332 (390)
T PRK03545        286 LLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMA  332 (390)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHH
Confidence             2222333333333333333333333344556667778887777654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=2.5e-35  Score=288.31  Aligned_cols=362  Identities=27%  Similarity=0.499  Sum_probs=281.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhh----------------------hcCCCchhHHHHHHHHHHHHHHh
Q 012519           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSL----------------------AHGWSRSFSGIVQSSFLWGYLVS  150 (461)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~~~s~~~~~~~~~  150 (461)
                      ..+.++.+..+++++..+++.++..++...+.+.+                      |++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            34567888888999999999999999999888876                      78999999999999999999999


Q ss_pred             HhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHH
Q 012519          151 PIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA  230 (461)
Q Consensus       151 ~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~  230 (461)
                      +++.|+++||+|||+++.++.++++++.+++.++...+++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999999999999999988875442257889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCC
Q 012519          231 MGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHK  309 (461)
Q Consensus       231 ~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (461)
                      ..+..+|..+++++++.+.+. .|||+.|++.+++.++..++++...+|+|+++++..+++.+...+...      ..++
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~------~~~~  246 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQ------GQKG  246 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcc------cccC
Confidence            999999999999999999988 499999999999988887777777777776555444444333322111      1111


Q ss_pred             CCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhh
Q 012519          310 PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (461)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~  389 (461)
                      +.....+++++++++.+|...+..++.....+.+.+|+|.|+++.+|++..+.++..++..++..++.++.|+++||+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~  326 (465)
T TIGR00894       247 STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKS  326 (465)
T ss_pred             CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11123468899999999999999999999999999999999999899999999999999999999999999999999987


Q ss_pred             cCcchhh-hHHHHHHHhhHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          390 RGTSVTL-TRKILQSIGFIAPGIALIGLTA-AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       390 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      |+..... .++.....+..+.++..+.... .......+..+.+.+++.+...+.......+..|+.+|.+.|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  399 (465)
T TIGR00894       327 SKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKG  399 (465)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHH
Confidence            6533222 2223333333222322222222 223333333444444444444455556666777887777655

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=4.8e-35  Score=287.45  Aligned_cols=353  Identities=17%  Similarity=0.144  Sum_probs=272.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHH
Q 012519           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (461)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  175 (461)
                      ++|..+..++++.++...|...++..+|.+.+++|.+..+.+|+.+.|.++..++.+++|+++||+|||++++++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhc-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       176 i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      +++++++++  +|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+.+++||
T Consensus        83 ~~~~~~~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         83 LASLAAAFS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            999999999  99999999999999999998898888887776 678999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-cchhHHH----------HHHHhhcCcc-cc------------------
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELE----------YILREKQKPL-LM------------------  304 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~-~~------------------  304 (461)
                      ||.|++...+.++..++.++..|+++++..+ .+.....          .......+.. ..                  
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999888887777777777776543221 1111100          0000000000 00                  


Q ss_pred             CCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhh
Q 012519          305 GNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLS  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~  384 (461)
                      ..+.+.+.+..++ +++|+|.++...+..++.....+....++|.|+++.+|+++.++|....+..++..++.++.|++.
T Consensus       241 ~~e~~~~~p~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~  319 (495)
T PRK14995        241 RTQLAASRPMIDM-RLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV  319 (495)
T ss_pred             HHHhcCCCCCcCH-HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011122233343 788999999888888888888888889999999999999999999999999999999999999999


Q ss_pred             hhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHh---ccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          385 DMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT---AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       385 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      ||+++|         ..+..+.++.+++...+.   ..++.+......++.+.+.+...+.......+..| +++|.+.|
T Consensus       320 ~r~g~~---------~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~  390 (495)
T PRK14995        320 SRLGLR---------LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGA  390 (495)
T ss_pred             HHcCch---------HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHH
Confidence            999977         233334444433333222   12233333334445555555555555555555555 56776654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=6.7e-35  Score=274.06  Aligned_cols=317  Identities=13%  Similarity=0.059  Sum_probs=237.6

Q ss_pred             HHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHH
Q 012519          111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL  190 (461)
Q Consensus       111 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  190 (461)
                      +......+++.+|.+.+|+|++..+.|++.+.+.+++.+++++.|+++||+|||++++.+......+.+.....  ++++
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~   80 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--FNYE   80 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--ccHH
Confidence            45566788999999999999999999999999999999999999999999999998776665555554434444  6899


Q ss_pred             HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 012519          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (461)
Q Consensus       191 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  270 (461)
                      .++++|+++|++.+. .......++|++|+++|++++++.+.+..+|..+++++++.+.+++|||+.|++.++++++..+
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            999999999999985 5566677799999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 012519          271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY  350 (461)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (461)
                      +.++..||+|+++++..+  .                   ++..+++++++++|.+|...+..++....++.+.+|+|.|
T Consensus       160 ~~~~~lp~~p~~~~~~~~--~-------------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~  218 (368)
T TIGR00903       160 LVLAALPALPFQAAEGFG--F-------------------KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAA  218 (368)
T ss_pred             HHHHHcCCCCCCCCCCcc--h-------------------HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888887754321000  0                   0011246789999999999999999999999999999999


Q ss_pred             HHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHH
Q 012519          351 FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLT  430 (461)
Q Consensus       351 ~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (461)
                      +++ .|++.. .+....+..+.+.   +..++++||..|++.+     +.......+..++.+.......+....+.+..
T Consensus       219 L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~~r~~~r-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  288 (368)
T TIGR00903       219 LRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRVARAGLR-----SIYIRAAALLIAAFFLALAFELNRLALFAFIG  288 (368)
T ss_pred             HHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHhhhhhhH-----HHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            987 578764 5555555544444   4457888888765321     11122122222333333333333333333444


Q ss_pred             HHHHHHhhhhhchhHhhhhhccc-ccccccCC
Q 012519          431 LAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGI  461 (461)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~gl  461 (461)
                      +..++.....+..+.+.+|.+|+ .||++.|+
T Consensus       289 l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~  320 (368)
T TIGR00903       289 IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGA  320 (368)
T ss_pred             HHHHhhhhhHHHHHHHHHHhcchhhcCcccch
Confidence            44444555556677888999986 69999875

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=4.8e-34  Score=278.54  Aligned_cols=344  Identities=18%  Similarity=0.155  Sum_probs=255.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 012519           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (461)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  177 (461)
                      ++.+...+...+........+.+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~  114 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA  114 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            44555566666777777778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 012519          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------  250 (461)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------  250 (461)
                      .++.+++  ++++.++++|+++|++.+.. .....+++|++|+++||+++++.....++|..+++.+.+.+..       
T Consensus       115 ~~~~~~~--~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  191 (476)
T PLN00028        115 VFCMSLV--SSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA  191 (476)
T ss_pred             HHHHHHh--cCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999  99999999999999998864 4456789999999999999999988877887777666655432       


Q ss_pred             --hcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHH
Q 012519          251 --QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWS  328 (461)
Q Consensus       251 --~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (461)
                        ..|||+.|++.+++.++..++.+++.++.|+...    ++.+   ++        ...++......+++.++++++|.
T Consensus       192 ~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~----~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~  256 (476)
T PLN00028        192 PSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY----RELK---KS--------GTMPKDSFSKVLRYGVTNYRTWI  256 (476)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch----hhHH---hc--------CccccccHHHHHHHHHcCchhHH
Confidence              2489999999999888777776666555543220    1100   00        00001111234567788999998


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHH
Q 012519          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (461)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (461)
                      +.+..++.....+....++|.|+.+.+|++..+++.+.++..++++++++++|+++||+++|....  .|+.+.....++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~--~r~~~~~~~~~l  334 (476)
T PLN00028        257 LALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR--GRLWALWIVQTL  334 (476)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc--hhHHHHHHHHHH
Confidence            888777777777778889999998888999999999999999999999999999999999863211  123333333333


Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccCC
Q 012519          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI  461 (461)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  461 (461)
                      .++..+.+...++.......+++...+.+...+..+.+..++.|+++|++.|+
T Consensus       335 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  387 (476)
T PLN00028        335 GGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGL  387 (476)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhh
Confidence            44433334334443333333444444444455556666777888888888774

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=4e-34  Score=276.72  Aligned_cols=331  Identities=16%  Similarity=0.112  Sum_probs=239.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcC---CCchhHHHHH---HHHHHHHHHhHhhhhhhhhhhcchHHHHH
Q 012519           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHG---WSRSFSGIVQ---SSFLWGYLVSPIAGGTLVDYYGGKIIMAW  169 (461)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~---s~~~~~~~~~~~~~g~l~dr~Grr~~~~~  169 (461)
                      +++..+...+++.+++++|...++...|.+.++++   .+..+.+...   +...++..++++++|+++||+|||+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            45556777788999999999999999999999985   4555444444   44455555999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccHH--------HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHH
Q 012519          170 GVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (461)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  241 (461)
                      +.+++++++++++++  +++.        .++++|+++|++.|..++...+++.|++|+++|+++.++...+...|..++
T Consensus        99 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         99 SVCMMCFGSLVIACL--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999998  7764        688999999999999999999999999999999999999999988998888


Q ss_pred             HHHHHHHH--------hhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCC
Q 012519          242 LVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATV  313 (461)
Q Consensus       242 ~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (461)
                      +.+...+.        ..+|||++|++.++++++... .....||+++.       +.++            .  +   .
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~-------~~~~------------~--~---~  231 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ-------ETRA------------L--K---E  231 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH-------HHhh------------h--c---c
Confidence            87765553        257999999988777665432 22233443321       0000            0  0   0


Q ss_pred             ChhHHHHhcchhhHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCc
Q 012519          314 IPPFRRLLSKMPTWSIIVANAM-HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT  392 (461)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~  392 (461)
                      ..++++++++++.+...+..++ ....++.+..|+|.|+++.+|++..+.+....+..++..++.++.|+++||++||  
T Consensus       232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr--  309 (432)
T PRK10406        232 AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR--  309 (432)
T ss_pred             cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch--
Confidence            1256788889888876665554 3667788889999999887899988888888888888888899999999999988  


Q ss_pred             chhhhHHHHHHHhhHHHHHH--HHH-HhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccCC
Q 012519          393 SVTLTRKILQSIGFIAPGIA--LIG-LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGI  461 (461)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~gl  461 (461)
                           + .+.....+.....  ... .....+....+..+.+..+..+...+....+.+|.+|+ .||++.|+
T Consensus       310 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~  376 (432)
T PRK10406        310 -----T-SMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGL  376 (432)
T ss_pred             -----H-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhH
Confidence                 2 2222222111111  111 11122222222223333333444445567778899985 69998874

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=3.9e-34  Score=276.79  Aligned_cols=287  Identities=18%  Similarity=0.172  Sum_probs=234.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHH
Q 012519           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (461)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  175 (461)
                      .++.+.....+.+++.+++...++..+|.+.+++|.+..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            44566667778888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 012519          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (461)
Q Consensus       176 i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr  255 (461)
                      ++.++++++  ++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+.+.+|||
T Consensus       100 ~~~~~~~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~  177 (434)
T PRK11663        100 IINILFGFS--SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR  177 (434)
T ss_pred             HHHHHHHHH--hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence            999999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChh-H-HHHhcchhhHHHHHHH
Q 012519          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP-F-RRLLSKMPTWSIIVAN  333 (461)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~  333 (461)
                      +.|++.+++.++..++..+..+|+|++......++.+...++..    . +.+.++....+ + ...+++|.+|.+.+..
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELA----Q-QQEGAGLSRKEILTKYVLLNPYIWLLSFSY  252 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccc----h-hccccCCChhhhHHHHHhcChHHHHHHHHH
Confidence            99999888877665555555666654321111000000000000    0 00000111111 2 2367789999988888


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhh
Q 012519          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (461)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~  389 (461)
                      ++.......+..|+|.|+++.+|++..+++...+...+++++++++.|+++||+.+
T Consensus       253 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~  308 (434)
T PRK11663        253 VLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN  308 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence            88888888888999999987789999999999999999999999999999999943

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1e-33  Score=282.87  Aligned_cols=356  Identities=15%  Similarity=0.142  Sum_probs=262.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  173 (461)
                      .+++|.+++++.++.+..+++...++.++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            45678888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 012519          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-  252 (461)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-  252 (461)
                      .+++.++++++  ++++.++++|++.|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..+...+ 
T Consensus       242 ~~i~~ll~afa--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       242 NGFFAFFSSFV--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999  999999999999999999999999999999999999999999999999999999999887776543 


Q ss_pred             ------------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CcchhHHHHHHHhhcCcc-----------------
Q 012519          253 ------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREKQKPL-----------------  302 (461)
Q Consensus       253 ------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------  302 (461)
                                  +||+.+++.++++++. ++.+++.||+|+... +.+.++..+..++.....                 
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~  398 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK  398 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence                        5899888877766554 445566788886421 112222222211110000                 


Q ss_pred             ---ccC---C-CCCCC---------------CCChhHHHHhcc---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHh---
Q 012519          303 ---LMG---N-KHKPA---------------TVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVILSWMPIYFNFV---  354 (461)
Q Consensus       303 ---~~~---~-~~~~~---------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  354 (461)
                         ..+   + .....               ..+.+++++|+.   ++.+.+++.+++..+.++++..|+|.++.+.   
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~  478 (742)
T TIGR01299       399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQAD  478 (742)
T ss_pred             HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000   0 00000               001134555544   3467788888999999999999999886541   


Q ss_pred             -h-----------------CCCcc--------------------------------------------------------
Q 012519          355 -Y-----------------HIDLR--------------------------------------------------------  360 (461)
Q Consensus       355 -~-----------------g~s~~--------------------------------------------------------  360 (461)
                       +                 +++..                                                        
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  558 (742)
T TIGR01299       479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN  558 (742)
T ss_pred             HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence             0                 00000                                                        


Q ss_pred             -------------------------------------ccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHH
Q 012519          361 -------------------------------------QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (461)
Q Consensus       361 -------------------------------------~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (461)
                                                           .......+..++.+++.+++|+++||+|||         .++.
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr---------~~l~  629 (742)
T TIGR01299       559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL---------RMLA  629 (742)
T ss_pred             cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHH
Confidence                                                 011224455678899999999999999988         3445


Q ss_pred             HhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccCC
Q 012519          404 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGI  461 (461)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~gl  461 (461)
                      +++++.+++.+++.+.++....+++.++..++.+...+....++.|++|. .||+++|+
T Consensus       630 ~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi  688 (742)
T TIGR01299       630 GSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGF  688 (742)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            55666666655555555444444444454555555667788889999985 58887763

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=2.9e-34  Score=275.51  Aligned_cols=347  Identities=25%  Similarity=0.391  Sum_probs=265.4

Q ss_pred             HHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccc
Q 012519          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT  187 (461)
Q Consensus       108 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  187 (461)
                      +++..++...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++++++  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--G   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--c
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 012519          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (461)
Q Consensus       188 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  267 (461)
                      +++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.|++.+++.++
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhH
Q 012519          268 WVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWM  347 (461)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (461)
                      ..++.++..++++++.+...+++.+...+....+  .+..++++......++.+++|+++...+..++..........+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAE--QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF  238 (399)
T ss_pred             HHHHhhheecCCCCccccCCHHHHhhcchhhccc--cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            7777776667766544333222222111111100  01111222334457788999999999999999999999999999


Q ss_pred             HHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHH
Q 012519          348 PIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA  427 (461)
Q Consensus       348 ~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (461)
                      |.|+++.+|++..+.+.......++++++.++.|++.||+++|+...... ......+.+...+........+..+....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (399)
T TIGR00893       239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA-RKTAIIAGLVLSLLMFATNYVNIPYAALA  317 (399)
T ss_pred             HHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            99999988999999999999999999999999999999999884211111 01111111111222222211223333333


Q ss_pred             HHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          428 WLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      ...+..+..+ ..+....+..|..|+ ++|++.|
T Consensus       318 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~  350 (399)
T TIGR00893       318 LVALGFFGLG-AGAIGWALISDNAPGNIAGLTGG  350 (399)
T ss_pred             HHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHH
Confidence            3333333333 466777888888874 6887765

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.4e-33  Score=267.46  Aligned_cols=322  Identities=15%  Similarity=0.134  Sum_probs=246.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH
Q 012519           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (461)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  176 (461)
                      .|..+..+.+..+............+|.+.+++|.++++.++..+.+.++..+++++.|+++||+|||++++.+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            45555555555555555555666778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 012519          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~  256 (461)
                      +.++++++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..+||++++.+.+++|||+
T Consensus        98 ~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~  175 (394)
T PRK10213         98 SCLLVSFA--NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN  175 (394)
T ss_pred             HHHHHHHH--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            99999998  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHH
Q 012519          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (461)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (461)
                      .|++.++++++..+......||.+++++                           +.....++.+++|.++...+..++.
T Consensus       176 ~f~~~~~l~~~~~l~~~~~~p~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~~~  228 (394)
T PRK10213        176 VFNAAAVMGVLCIFWIIKSLPSLPGEPS---------------------------HQKQNTFRLLQRPGVMAGMIAIFMS  228 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCcccc---------------------------cchhHHHHHhcCHHHHHHHHHHHHH
Confidence            9999887776655555444555432110                           0011345788899998877776776


Q ss_pred             HHHHHHHHHhH-HHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHH
Q 012519          337 SWGFFVILSWM-PIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (461)
Q Consensus       337 ~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (461)
                      ....+....++ |.|. +.+|+++.+.+......+++.+++.++.+++.||.+++         .+.....+.....+++
T Consensus       229 ~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~---------~l~~~~~~~~~~~~~l  298 (394)
T PRK10213        229 FAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL---------ALAGAPLVLAVSALVL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh---------HHHHHHHHHHHHHHHH
Confidence            66666666776 5555 45699999999999999999999999999999985433         2222222222222222


Q ss_pred             HhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccccccc
Q 012519          416 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGV  457 (461)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~  457 (461)
                      ....++.+......++.+...+...+.....+++..|++.+.
T Consensus       299 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~  340 (394)
T PRK10213        299 TLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEK  340 (394)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHH
Confidence            223333444444444455555666666666677666765443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=2.9e-33  Score=269.37  Aligned_cols=334  Identities=22%  Similarity=0.182  Sum_probs=258.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      +++|.++.++++..++++++....+...|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF   90 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            36788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      .++.++++++  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+|
T Consensus        91 ~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  168 (406)
T PRK11551         91 GLFSLATAQA--WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW  168 (406)
T ss_pred             HHHHHHHHHh--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhc---chhhHHHHH
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLS---KMPTWSIIV  331 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  331 (461)
                      |+.|++.+++.++..++.....||+++..++...++                  +++   ...+..++   .+..+...+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~---~~~~~~~~~~~~~~~~~~~~  227 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK------------------QRA---PVLRALFGEGRATATLLLWI  227 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch------------------hhh---hhHHHHhhhhhhhHHHHHHH
Confidence            999999887777666666666677654221100000                  000   01111222   223344445


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHH
Q 012519          332 ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (461)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (461)
                      ..++.....+....|+|.|+++ .|+++.+.+.......++.++++++.|++.||+++|       +  .+..+.+..++
T Consensus       228 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-------~--~~~~~~~~~~~  297 (406)
T PRK11551        228 SYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-------R--VVLLIYAGILA  297 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-------H--HHHHHHHHHHH
Confidence            5555556667778899999988 599999999999999999999999999999999987       2  22223333344


Q ss_pred             HHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccCC
Q 012519          412 ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI  461 (461)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~gl  461 (461)
                      +++.+...++.+......++.+.+.+...+.......+..| +++|++.|+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  348 (406)
T PRK11551        298 SLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGA  348 (406)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhH
Confidence            44444444444333333333333334445666777788877 468887763

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=2.1e-33  Score=266.68  Aligned_cols=339  Identities=18%  Similarity=0.202  Sum_probs=257.6

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 012519          102 SMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  180 (461)
                      ...+++.++.......+.+..|. +.+++|++..+.+++.+++.+++.+++++.|+++||+|||++++++.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34667777777788889999995 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccc-cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Q 012519          181 TPWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---------  250 (461)
Q Consensus       181 ~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------  250 (461)
                      ++++  + +++.+++.|+++|++.+ ..+...+++.|++|+++|++++++.....++|..+++.+++.+..         
T Consensus        84 ~~~~--~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886        84 AGLA--VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             HHHH--hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999  8 99999999999999966 456678999999999999999999998888888888888777665         


Q ss_pred             -hcCchhHH-HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHH
Q 012519          251 -QAGIFGPF-VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWS  328 (461)
Q Consensus       251 -~~gwr~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (461)
                       +.+||+.| +..+++..+..++.+...++.|++.++.++.+.       ..    .....++......++.+++|+++.
T Consensus       161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T TIGR00886       161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSF-------KG----ARWSVGTGALGDQLKVFRDRHTWI  229 (366)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccc-------cc----ccccccchhHHHHHHHHhccchhh
Confidence             24899999 444555555555555555555533211100000       00    000001111124567888999998


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHH
Q 012519          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (461)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (461)
                      ..+..++.....+....+.|.|+++.+|+++.+++.+..+..+.+++++++.|++.||+++|       +..........
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-------~~~~~~~~~~~  302 (366)
T TIGR00886       230 LALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-------RKLLMSFLGVA  302 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-------hhHHHHHHHHH
Confidence            88888888888888899999999998999999999999999999999999999999999987       33333333333


Q ss_pred             HHHHHHHHhccC--hhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccCC
Q 012519          409 PGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI  461 (461)
Q Consensus       409 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  461 (461)
                      .+..++......  +....+....+.....+...+..+....++.|+++|+++|+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~  357 (366)
T TIGR00886       303 MGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGL  357 (366)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHH
Confidence            333333333332  33333444455566667777778888889999999988774

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=5.1e-33  Score=274.14  Aligned_cols=349  Identities=17%  Similarity=0.114  Sum_probs=266.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      .+..++++.++..++....++..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45677788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 012519          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (461)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~  259 (461)
                      +++++  ++++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.++.+||+.|+
T Consensus        83 ~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            99999  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCC-cchhHH----------HHHHHhhcC-ccccC-------------------CCC
Q 012519          260 IFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYEL----------EYILREKQK-PLLMG-------------------NKH  308 (461)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~-~~~~~-------------------~~~  308 (461)
                      +.+.++++..++.++..|+++++.++ .+....          ........+ .+...                   .+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL  240 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            98888877776666666654432211 111100          000000000 00000                   000


Q ss_pred             CCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHh
Q 012519          309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (461)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (461)
                      ..+++..+ .+++++|+++...+..++..+..+....++|.|+++.+|+++.++++...+..++.+++.++.|++.||++
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~  319 (485)
T TIGR00711       241 TDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKID  319 (485)
T ss_pred             cCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            11112222 26789999999988888888888999999999999989999999999999999999999999999999999


Q ss_pred             hcCcchhhhHHHHHHHhhHHHHHHHHHHh--cc--ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          389 QRGTSVTLTRKILQSIGFIAPGIALIGLT--AA--KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      +|         .....+..+.+++...+.  ..  .+.+......++.+.+.+...+.......+..| +++|+++|
T Consensus       320 ~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~  387 (485)
T TIGR00711       320 PR---------KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS  387 (485)
T ss_pred             cH---------HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence            87         233444444444444333  11  222333333344444444444444444444444 67887765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=6e-33  Score=267.26  Aligned_cols=355  Identities=14%  Similarity=0.108  Sum_probs=250.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  173 (461)
                      ++++|+.+..++++++.+.++....++..|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||++++++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   86 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL   86 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012519          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (461)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  253 (461)
                      .+++.++++++  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus        87 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        87 FSAGTLACGFA--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHh--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             --chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcch-hHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcc--hhhHH
Q 012519          254 --IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISK-YELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK--MPTWS  328 (461)
Q Consensus       254 --wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  328 (461)
                        ||+.|++.++..++.. +.....||+++..+..++ ++.....++..+.... .....+......++..+.  +.+..
T Consensus       165 ~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  242 (405)
T TIGR00891       165 DGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR-IANIVMTLAAAMVQSAGKRWPTFVY  242 (405)
T ss_pred             ccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchh-hhhhhhhhhHHhhhhhhhhhHHHHH
Confidence              9999988665555443 333444554432111100 0000000000000000 000000000111111111  11223


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHH
Q 012519          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (461)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (461)
                      ..+...+..........++|.|+.+.+|++..+.+.+.+...++.+++.++.|++.||+++|+        .+ ..+.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~--------~~-~~~~~~  313 (405)
T TIGR00891       243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK--------AY-VCSLLA  313 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--------hh-HHHHHH
Confidence            333344444555566788999998888999999999999999999999999999999999882        22 222222


Q ss_pred             H-HHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccCC
Q 012519          409 P-GIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI  461 (461)
Q Consensus       409 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~gl  461 (461)
                      . ...+.......+.+......++..++.....+.......+..| +++|+++|+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  368 (405)
T TIGR00891       314 GQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGF  368 (405)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhH
Confidence            2 1122222222333322222233333333444556677788887 468887763

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=1.2e-32  Score=260.24  Aligned_cols=322  Identities=12%  Similarity=0.088  Sum_probs=243.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhh-hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      ++-.++.+.+.+++.++.+.....++++.+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.+
T Consensus        29 ~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l  108 (462)
T PRK15034         29 KHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA  108 (462)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            3344577888888999999999999999999877 899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc---cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          173 LWSLATFLTPWAA---DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (461)
Q Consensus       173 ~~~i~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~  249 (461)
                      +.++.+++.+++.   .++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..++++++..+.
T Consensus       109 l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        109 ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999888641   26999999999999998 6688999999999999999999999998777777776666665433


Q ss_pred             -----h-------------hcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCC
Q 012519          250 -----S-------------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPA  311 (461)
Q Consensus       250 -----~-------------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (461)
                           .             ..+||.++++.+++.++..++.++..++.++.+                            
T Consensus       188 ~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~----------------------------  239 (462)
T PRK15034        188 FVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSR----------------------------  239 (462)
T ss_pred             HHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc----------------------------
Confidence                 2             234788888888888777777776655443211                            


Q ss_pred             CCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcC
Q 012519          312 TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRG  391 (461)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~  391 (461)
                      ....+.++++|+|+.|.+++.+++.+..+.++..++|+|+++.+  +.........+..+...+.++++|+++||+|++ 
T Consensus       240 ~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~-  316 (462)
T PRK15034        240 ASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV-  316 (462)
T ss_pred             cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch-
Confidence            11235568999999999999999999999999999999998854  332222233444577888999999999999988 


Q ss_pred             cchhhhHHHHHHHhhHHHHH-HHHHHhcc---ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc
Q 012519          392 TSVTLTRKILQSIGFIAPGI-ALIGLTAA---KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ  453 (461)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  453 (461)
                            +........+.... ........   .+.+.....++......+++++..+-++..++|+
T Consensus       317 ------~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~  376 (462)
T PRK15034        317 ------RVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQ  376 (462)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence                  22222221111111 11111111   1233344444445566777888888777777774

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=8.3e-33  Score=271.44  Aligned_cols=339  Identities=18%  Similarity=0.130  Sum_probs=236.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchh-HHH-----HHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSF-SGI-----VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      ..+...+++.+++++|...++...|.+.++++.+..+ .++     +.++..++..++++++|+++||+|||+++.++++
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   95 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV   95 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            4667778899999999999999999999998644322 222     2477889999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccHHH--------HHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHH
Q 012519          173 LWSLATFLTPWAADTSLLA--------LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL  244 (461)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~  244 (461)
                      ++++++++++++  +|++.        ++++|+++|++.|..++...+++.|++|+++||++.++...+..+|..+|+.+
T Consensus        96 l~~i~~~~~a~~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~  173 (490)
T PRK10642         96 IMSISTFCIGLI--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV  173 (490)
T ss_pred             HHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999  99874        88999999999999999999999999999999999999999988998888877


Q ss_pred             HHHHH--------hhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChh
Q 012519          245 SPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP  316 (461)
Q Consensus       245 ~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (461)
                      ...+.        ..+|||+.|++.++++++. ++.....||+|+.....     ++..+...+     .  ..+....+
T Consensus       174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~~~~-----~~~~~~~~~-----~--~~~~~~~~  240 (490)
T PRK10642        174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQQHV-----DKLEQGDRE-----G--LQDGPKVS  240 (490)
T ss_pred             HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHHHHH-----Hhhhhhccc-----c--ccccccCC
Confidence            65543        2579999999977655543 33344556665421110     000000000     0  00011234


Q ss_pred             HHHHhcc-hhh-HHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcch
Q 012519          317 FRRLLSK-MPT-WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV  394 (461)
Q Consensus       317 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~  394 (461)
                      +++++++ ++. .......++....++....|+|.|+++.+|++..+.++......++.+++.++.|+++||+|||    
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr----  316 (490)
T PRK10642        241 FKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR----  316 (490)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH----
Confidence            5566653 232 2233334455677888889999999887899888777777777888899999999999999988    


Q ss_pred             hhhHHHHHHHhhHHH--HHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          395 TLTRKILQSIGFIAP--GIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       395 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                         + .+........  ++.++.....++....+...++...+.+...+....+..+.+|+ .||++.|
T Consensus       317 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g  381 (490)
T PRK10642        317 ---P-FVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALA  381 (490)
T ss_pred             ---H-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHH
Confidence               2 2222211111  11112222222233333333333344444555566677788875 5887654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-33  Score=253.56  Aligned_cols=335  Identities=18%  Similarity=0.207  Sum_probs=280.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  173 (461)
                      ++.+.+.+.+..+...+.++.+.+++++.+.+.+++++|+.|.+++.++..+..++..++.|.+.||||.|++..+++++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            34456677777888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccc-cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012519          174 WSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (461)
Q Consensus       174 ~~i~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~  252 (461)
                      ..+.++..+++. .+++|++++++++.|++.+ ...+....+++|||||++|.++|+.. ..++|..+...++..++...
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            999999988882 2456799999999999855 78889999999999999999999999 99999999999999999999


Q ss_pred             C---chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCC-hhHHHHhcchhhHH
Q 012519          253 G---IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-PPFRRLLSKMPTWS  328 (461)
Q Consensus       253 g---wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  328 (461)
                      +   ||....+..+..++..+..++...|.|+.+...+                        +.. .+++.++++++.|.
T Consensus       167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~------------------------~~~~~~~~~v~~~~~~W~  222 (417)
T COG2223         167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK------------------------PQLPAQLKAVFSNKDTWL  222 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc------------------------ccchhHHHHHhcCcchHH
Confidence            9   9999999999999988888888888776422111                        011 45678899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHH
Q 012519          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (461)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (461)
                      +++.++..+.++.++..++|.|++++||.++.++|.......+.+.+.++++|+++||+|.+       |..+.......
T Consensus       223 lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-------rv~~~~f~~~~  295 (417)
T COG2223         223 LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-------RVTLAVFVGMA  295 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch-------hHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988       33333332222


Q ss_pred             HHHHHHHHhcc-----ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccCC
Q 012519          409 PGIALIGLTAA-----KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI  461 (461)
Q Consensus       409 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  461 (461)
                      .+...+.+...     .+....+..++....+.+.+.+..+-.+..++|++.|.+.|+
T Consensus       296 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~  353 (417)
T COG2223         296 LAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGI  353 (417)
T ss_pred             HHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHH
Confidence            22222222221     234445555666777888889999999999999988887763

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1.3e-32  Score=262.97  Aligned_cols=326  Identities=17%  Similarity=0.197  Sum_probs=254.4

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh
Q 012519          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  181 (461)
                      ..+....++.......+.+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   87 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL   87 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            33444445566677788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (461)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  261 (461)
                      +++  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.++.+||+.|++.
T Consensus        88 ~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        88 ALS--NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             HHH--ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            999  999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (461)
                      +++.++..+..++..||++++.++.+.                      +.....+++.+++|+++...+...+.....+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (385)
T TIGR00710       166 SLAGILLSALIFFILPETLPYEARIQI----------------------STYFETFLLLLKSKMFWGYALIYGASFGGFF  223 (385)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcccCCH----------------------HHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence            888877776666666655432211000                      0112345678889999888887777777778


Q ss_pred             HHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhc---
Q 012519          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA---  418 (461)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  418 (461)
                      ....+.|.++++.+|+++.+.+.+.....++.+++.++.|++.||+++|       +....  +.....+..+....   
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~  294 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-------SLLRM--GLILFAVSAVLLEITAI  294 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHHH--HHHHHHHHHHHHHHHHH
Confidence            8888899999888899999999999999999999999999999999987       22222  22222222211111   


Q ss_pred             c--ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          419 A--KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       419 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      .  ..........++.+...+...+.......|..|+++|++.|
T Consensus       295 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~  338 (385)
T TIGR00710       295 LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASA  338 (385)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHH
Confidence            1  11222222233333444555566666667777877777654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=2.3e-32  Score=261.46  Aligned_cols=324  Identities=15%  Similarity=0.122  Sum_probs=246.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHH
Q 012519           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (461)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  175 (461)
                      ++++..+.+++..++.+......++.+|.+.+++|++.++.+++.+.+.+++.++.++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45567777888888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCc
Q 012519          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGI  254 (461)
Q Consensus       176 i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gw  254 (461)
                      ++.++.+++  ++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+.. ..||
T Consensus        84 i~~~l~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         84 LAVAGLMFS--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHc--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            999999999  9999999999999999998889999999999999999999999999999999999999888765 5799


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHH
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (461)
                      |+.|++.+++.++..++.++.  +.|+..++.+++                ..+..       ++ ..++.++...+..+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~----------------~~~~~-------~~-~~~~~~~~~~~~~~  215 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFS--EFPALGKHAPKA----------------DKPVA-------KE-KWGIGVLFLAIAAL  215 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CCccccccCccc----------------cCccc-------cc-cCChHHHHHHHHHH
Confidence            999999888777665544432  222211100000                00000       01 12456777777777


Q ss_pred             HHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHH
Q 012519          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (461)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (461)
                      +....++.+..|+|.|+++.+|+++.+++.+.+...++..+++++.|+++||+++|+        .+. .......+.+.
T Consensus       216 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~--------~l~-~~~~~~~~~~~  286 (394)
T PRK03699        216 LYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR--------ILT-VLAGLALVLMY  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh--------HHH-HHHHHHHHHHH
Confidence            777788888999999998888999999999999999999999999999999999882        222 22222333333


Q ss_pred             HHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccc
Q 012519          415 GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSG  456 (461)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g  456 (461)
                      .+...++........+..+++.+..++.......+..|+.++
T Consensus       287 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  328 (394)
T PRK03699        287 LFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVASP  328 (394)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCH
Confidence            333333333333333333333444445555555566665443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=6e-32  Score=262.98  Aligned_cols=293  Identities=18%  Similarity=0.222  Sum_probs=226.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      .++++|.++..+.+.....+.+...++...|.+.++ |++..+.+++.+.+.+++++++++.|+++||+|||++++++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~  101 (452)
T PRK11273         23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  101 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence            344556666666677777777777778888999888 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc--cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 012519          173 LWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA-IGLVLSPILM  249 (461)
Q Consensus       173 ~~~i~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~  249 (461)
                      +.+++.+++++..  ..+++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|.. .+|+++..+.
T Consensus       102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999998887751  137888999999999999998888888999999999999999999999999874 4555544444


Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChh-HHHHhcchhhHH
Q 012519          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP-FRRLLSKMPTWS  328 (461)
Q Consensus       250 ~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  328 (461)
                      ...|||+.|++.+++.++..++.+++.||+|++....++++.+   ++..+.... ...++...... .+.++|++.+|.
T Consensus       182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  257 (452)
T PRK11273        182 WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK---NDYPDDYNE-KHEQELTAKQIFMQYVLPNKLLWY  257 (452)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh---hcccccccc-ccCCCccHHHHHHHHHHcChHHHH
Confidence            4459999999998888877777777777776543221111110   000000000 00011111111 234778999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      ..+..++.+...+....|+|.|+++..|++..+++....+..++.+++.++.|+++||++++
T Consensus       258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~  319 (452)
T PRK11273        258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  319 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            98888888888888899999999998899988888888888899999999999999999543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=4e-32  Score=261.17  Aligned_cols=335  Identities=13%  Similarity=0.076  Sum_probs=257.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  173 (461)
                      +++.+.....+.+..++..+....+.+.+|.+.+++|.+..+.++..+.+.+++.++.++.|+++||+|||++++++.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            35556777778888888888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012519          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (461)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  253 (461)
                      .+++.++++++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+.++.+
T Consensus        88 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         88 FILTCLAILLA--QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHH--ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999998  9999999999999999998889999999999999999999999999899999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHH
Q 012519          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (461)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (461)
                      ||+.|++.+++.++..+..++..||++++.++..                     +.++...++++++++|.++...+..
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~  224 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKL---------------------SLKELGRDYKLVLKNRRFVAGALAL  224 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCccccccc---------------------cHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            9999999888887776666555565543211100                     0011123556889999999888877


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHH
Q 012519          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (461)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (461)
                      ++..........+.|.++.+.+|+++.+.+.......++.+++.++.+++.||+++|       +  .+.++.+..++++
T Consensus       225 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-------~--~~~~~~~~~~~g~  295 (406)
T PRK15402        225 GLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR-------S--LIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------H--HHHHHHHHHHHHH
Confidence            777776677777889998888899998888887777788899999999999999887       2  2223333333322


Q ss_pred             HHHhc-----cChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          414 IGLTA-----AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       414 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      .....     ..+.++.....++.+.+.+...+..........|+++|++.|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~  347 (406)
T PRK15402        296 LLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSA  347 (406)
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHH
Confidence            22211     122333333333344444444444444444445567777654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.3e-33  Score=266.54  Aligned_cols=332  Identities=27%  Similarity=0.387  Sum_probs=256.7

Q ss_pred             HHHHHHHHHHHhhhHhhhh-hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc
Q 012519          105 ALALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (461)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  183 (461)
                      +++.++...+.....+.+| .+.+++|.+..+++++.+++.++..++.++.|+++||+|||++++++.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            5667777888888889999 899999999999999999999999999999999999999999999999999999777767


Q ss_pred             cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 012519          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (461)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  263 (461)
                      +  ++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+.++.+||+.|++.++
T Consensus        82 ~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 A--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             H--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             h--hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            7  78889999999999999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChh-HHHHhcchhhHHHHHHHHHHHHHHHH
Q 012519          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP-FRRLLSKMPTWSIIVANAMHSWGFFV  342 (461)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (461)
                      +.++..++.....++++++++..++++.+               ++.+....+ ++.++++|.+|...+..++..+....
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE---------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSG  224 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT-----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc---------------cccccccccccccccccchhhhhhhhhhHHHHHHHH
Confidence            99888775555555544433322111110               001111122 55777888887666666666678888


Q ss_pred             HHHhHHHHHHHhhCCC-ccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHh-hHHHHHHHHHHhccC
Q 012519          343 ILSWMPIYFNFVYHID-LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG-FIAPGIALIGLTAAK  420 (461)
Q Consensus       343 ~~~~~~~~~~~~~g~s-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  420 (461)
                      ...++|.|+++.+|++ ..+.+.+..+..+.+.++.++.|++.||++++       +....... .....+.+......+
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  297 (352)
T PF07690_consen  225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-------RRLLIAILLLILGALGLLLLPFSS  297 (352)
T ss_dssp             HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHCCSHHHC
T ss_pred             hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999988888999 78889899999999999999999999999876       22222222 222222222222223


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      +....+...++.+.+.+...+.......+..| +++|++.|
T Consensus       298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g  338 (352)
T PF07690_consen  298 SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFG  338 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            34444444555555777778888888888887 56887765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=8.5e-33  Score=263.47  Aligned_cols=323  Identities=18%  Similarity=0.173  Sum_probs=244.8

Q ss_pred             HHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcc
Q 012519          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (461)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  184 (461)
                      .+...+.......+++..|.+.+++|++.++.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~   88 (377)
T TIGR00890         9 TVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA   88 (377)
T ss_pred             HHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence            33333344446678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 012519          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (461)
Q Consensus       185 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~  264 (461)
                        ++++.++++|++.|++.+..++.....+.+++| ++|+++.++...+..+|..+++++.+.+.+..|||+.|++.+++
T Consensus        89 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        89 --DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             --HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence              999999999999999999888888889999997 68999999999999999988887888888888999999999998


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHH
Q 012519          265 GFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (461)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (461)
                      .++..+..++..++++++..+.+                    .+.+....+.++.++++.++...+..++.........
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPPGQLIKTN--------------------IEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLI  225 (377)
T ss_pred             HHHHHHHHHHheecCchhccccC--------------------cccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHH
Confidence            88877776666655443211100                    0000111245678889998888777777766666666


Q ss_pred             HhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccCh--h
Q 012519          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--P  422 (461)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  422 (461)
                      .+.+.|.++ +|.+..+.+.+.....++.++++++.|++.||++||+         .+..+.+..+++.+.....+.  .
T Consensus       226 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  295 (377)
T TIGR00890       226 GLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK---------TMSIVFGISAVGMAAMLFIPMLND  295 (377)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHHHHcccchh
Confidence            777777766 6888888889999999999999999999999999882         223333344444333333332  1


Q ss_pred             HHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      ...+...++.+...+...+....+..|..| +++|++.|
T Consensus       296 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g  334 (377)
T TIGR00890       296 VLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYG  334 (377)
T ss_pred             HHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhH
Confidence            222222233333444444555667778776 56888766

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=3.4e-32  Score=263.59  Aligned_cols=342  Identities=15%  Similarity=0.153  Sum_probs=245.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      +.++..+..+.++++.+.++.....+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||++++++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            34556677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      +++.++++++  ++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+..+|
T Consensus        94 ~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307         94 SVGTGLSGLA--SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHH
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (461)
                      |+.|++.++..++ .+......||+++..      + ++..+. .+    ......+....+++++++++.++.......
T Consensus       172 ~~~f~i~~~~~~~-~~~~~~~~p~~~~~~------~-~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (426)
T PRK12307        172 RAAFFVGLLPVLL-VIYIRARAPESKEWE------E-AKLSGK-GK----HSQSAWSVFSLSMKGLFNRAQFPLTLCVFI  238 (426)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHCCCChHHH------H-hhhhcc-cc----ccccchhhhhHHHHHHHhhchHHHHHHHHH
Confidence            9999885443322 221111222221100      0 000000 00    000011111235678888887765443322


Q ss_pred             ---HHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHH
Q 012519          335 ---MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (461)
Q Consensus       335 ---~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (461)
                         ......+.+..++|.|+++ .|+++...+.......++.+++.++.|++.||+++|       +  ....+.+..++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-------~--~~~~~~~~~~~  308 (426)
T PRK12307        239 VLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK-------K--TFSIGLLMSFL  308 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------H--HHHHHHHHHHH
Confidence               2233334467789999988 499988889888999999999999999999999987       2  22233333333


Q ss_pred             HHHHHhc-cChhHHHHHHHHHHHHHHh-hhhhchhHhhhhhccc-ccccccCC
Q 012519          412 ALIGLTA-AKSPVMASAWLTLAIGMKS-FSHSGFLVNLQEIAPQ-YSGVLHGI  461 (461)
Q Consensus       412 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~-~~g~~~gl  461 (461)
                      ..+.... .......+...+++.+... ...+.......|..|+ .+|+++|+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  361 (426)
T PRK12307        309 FIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGL  361 (426)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhH
Confidence            3222221 2222222222222222211 1223445666788875 58888763

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=1.1e-31  Score=258.68  Aligned_cols=331  Identities=15%  Similarity=0.114  Sum_probs=249.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH
Q 012519           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (461)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  176 (461)
                      ....+..+.+..++..+.....++..|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++.++.+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            34456667777788888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh---hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-h-
Q 012519          177 ATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-Q-  251 (461)
Q Consensus       177 ~~~~~---~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~-  251 (461)
                      +.+++   .++  ++++.++++|+++|+|.|...+..++++.|+.|+++|+..+++.+..+.+|..+|+.+++.+.. . 
T Consensus       104 ~~~l~~~~~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        104 GAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99875   456  8999999999999999999999999999998877777778999999999999999999876541 0 


Q ss_pred             ------------------------cCchhHHHHHHHHHH-HHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCC
Q 012519          252 ------------------------AGIFGPFVIFGLSGF-LWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN  306 (461)
Q Consensus       252 ------------------------~gwr~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (461)
                                              .+||++|+....+.. +..++.....||.+++++                     .
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~---------------------~  240 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------------------S  240 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---------------------c
Confidence                                    256666765443333 322222222233211100                     0


Q ss_pred             CCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHH-HHhhCCCccccchhhhhhHHHHHHHHHHHHHhhh
Q 012519          307 KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF-NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (461)
                      .++........++++++|.++...+..++..........|.+.|+ ++.+|+++.++++.+....++.++++++++++.|
T Consensus       241 ~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~  320 (438)
T PRK10133        241 DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS  320 (438)
T ss_pred             cccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000111223456889999988887777888888888888999885 5667999999999999999999999999999999


Q ss_pred             hHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      |+++|       + .+ ..+.++....+++....+.. ..+..+.+.+++.+..++..++...+..|++.+++.|
T Consensus       321 r~g~~-------~-~l-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~  385 (438)
T PRK10133        321 RFAPH-------K-VL-AAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSS  385 (438)
T ss_pred             HcCHH-------H-HH-HHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchh
Confidence            99988       2 22 22222222222222222222 2344555667777788888888888888877666654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=7.6e-32  Score=255.78  Aligned_cols=329  Identities=14%  Similarity=0.098  Sum_probs=256.0

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc
Q 012519          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  183 (461)
                      +.++.++.........+.+|.+..+++.+..+.+++.+++.++..++.++.|+++||+|||++++.+.++..++.++.++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            34566667777778888889999999999999999999999999999999999999999999999999999988888877


Q ss_pred             cccc-----cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 012519          184 AADT-----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (461)
Q Consensus       184 ~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f  258 (461)
                      .  +     +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+||.+++.+.+..|||+.|
T Consensus        84 ~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~  161 (365)
T TIGR00900        84 V--ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAI  161 (365)
T ss_pred             H--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            7  6     99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHH
Q 012519          259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (461)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (461)
                      ++.++..++..++.+...++++++.+..+.++ + .               .++....++.++++|.++...+..++...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (365)
T TIGR00900       162 WVDAVGFAISALLIVSVRIPELAASEIQALSN-A-V---------------LRDTREGIKFVLKNPLLRTLLLLALLFNL  224 (365)
T ss_pred             HHHHHHHHHHHHHHHhcccccCCCccccccch-h-H---------------HHHHHhHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99887766655544443322221111100000 0 0               00011345678889999988888888777


Q ss_pred             HHHHHH-HhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHh
Q 012519          339 GFFVIL-SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (461)
Q Consensus       339 ~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (461)
                      ...... .+.|.|.++.+|.+..+.+.+.....++.+++.++.+++.||.+++         .....+....++......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       225 VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM---------ALMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHH
Confidence            777666 8899999887899999999999999999999999999999999877         233333444444444444


Q ss_pred             ccCh-hHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          418 AAKS-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       418 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      ..++ .+...+..++.+.+.+...+....+..+..| +++|++.|
T Consensus       296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (365)
T TIGR00900       296 LTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFG  340 (365)
T ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4432 4444444455555566666777778888876 46887765

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=4.1e-32  Score=259.24  Aligned_cols=261  Identities=13%  Similarity=0.196  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 012519           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (461)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  177 (461)
                      |.....++.+.+.... ....++.+|.+++|+|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..++.+++++
T Consensus         9 ~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~   87 (393)
T PRK09705          9 FMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG   87 (393)
T ss_pred             HHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence            3444444444443322 257789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cchh
Q 012519          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFG  256 (461)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~  256 (461)
                      .++++++  ++++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++.+.++. +||+
T Consensus        88 ~~~~~~a--~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~  164 (393)
T PRK09705         88 ALMRELY--PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ  164 (393)
T ss_pred             HHHHHHC--cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            9999999  999999999999999999999999999999997 88999999999999999999999999998875 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHH
Q 012519          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (461)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (461)
                      .+.+.++..++..+..+...++.|++++                     +  ++.    ..++.+++++.|...+..++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~--~~~----~~~~~l~~~~~~~l~~~~~~~  217 (393)
T PRK09705        165 TLAWWALPAVVALFAWWWQSAREVASSH---------------------K--TTT----TPVRVVFTPRAWTLGVYFGLI  217 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccc---------------------C--CCc----CCcccccCHhHHHHHHHHHHH
Confidence            9887766655444433333232222110                     0  000    112455678888887777778


Q ss_pred             HHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      ...++....|+|.|+++ +|++..+++...++..++.++++++.+++.||.++|
T Consensus       218 ~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~  270 (393)
T PRK09705        218 NGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR  270 (393)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            88888899999999988 699999999999999999999999999999999887

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=8.8e-33  Score=263.57  Aligned_cols=280  Identities=19%  Similarity=0.228  Sum_probs=231.3

Q ss_pred             HHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccc
Q 012519          106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA  185 (461)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  185 (461)
                      +.++..+.+...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+++.++.+++ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-   80 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-   80 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-
Confidence            3466777888899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCchhHHHHHHHH
Q 012519          186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL-VLSPILMSQAGIFGPFVIFGLS  264 (461)
Q Consensus       186 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~~~~l~~~~gwr~~f~~~~~~  264 (461)
                       ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+||+.|++.+++
T Consensus        81 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (379)
T TIGR00881        81 -TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGII  159 (379)
T ss_pred             -hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence             99999999999999999999999999999999999999999999999999999999 5777777888999999999888


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHH
Q 012519          265 GFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (461)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (461)
                      .++..++.++..+|++++.+..+.++.. ..+  .+....+.+++........++++++|.++...+..++.........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (379)
T TIGR00881       160 AIIVSLICFLLLRDSPQSCGLPPAEEMP-NEE--PDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL  236 (379)
T ss_pred             HHHHHHHHheeeCCCccccccCccccCc-ccc--cccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            8777776666667665433211111100 000  0000000111111222345678899999999988888888888999


Q ss_pred             HhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      .+.|.|+++.+|+++.+.+.......++.+++.++.+++.||..++
T Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  282 (379)
T TIGR00881       237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG  282 (379)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence            9999999988899999999999999999999999999999987544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.4e-31  Score=256.73  Aligned_cols=263  Identities=16%  Similarity=0.119  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh
Q 012519          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  181 (461)
                      ..+.+..+...+....+.+.+|.+.++++.+..+.++..+++.++++++++++|+++||+|||++++.+.++++++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            33455556677777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (461)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  261 (461)
                      +++  ++++.++++|+++|++.+...+....++.|++|+++|++++++......+|..+||++++.+.++.|||+.|++.
T Consensus        99 ~~a--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~  176 (413)
T PRK15403         99 LFT--TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII  176 (413)
T ss_pred             HHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999  999999999999999988777788889999999999999999999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (461)
                      +++.++..+..++..||++++.++.                     ...+....++++++|||.++...+..++.....+
T Consensus       177 ~~~~~i~~~~~~~~lp~~~~~~~~~---------------------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~  235 (413)
T PRK15403        177 AVMGLIAFVGLLLAMPETVKRGAVP---------------------FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMM  235 (413)
T ss_pred             HHHHHHHHHHHHHhCCCCccccCCC---------------------CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            9888877666565566654321100                     0001112466788999999998888888888888


Q ss_pred             HHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhH
Q 012519          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML  387 (461)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~  387 (461)
                      .+..+.|.++++.+|+++.+.++.......+.+++..+.+.+.++.
T Consensus       236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~  281 (413)
T PRK15403        236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP  281 (413)
T ss_pred             HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            8888999999998899999999988777777788777777665443

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=2.9e-31  Score=256.78  Aligned_cols=336  Identities=14%  Similarity=0.061  Sum_probs=233.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhh-hhhhc--CCCchhHHHHH-----HHHHHHHHHhHhhhhhhhhhhcchH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVP-LSLAH--GWSRSFSGIVQ-----SSFLWGYLVSPIAGGTLVDYYGGKI  165 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~  165 (461)
                      -.++++.+....++.+++++|...++...|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~   95 (438)
T PRK09952         17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR   95 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH
Confidence            3444567788888999999999999988775 55555  66665 45554     3455667899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccHH--------HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHH
Q 012519          166 IMAWGVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG  237 (461)
Q Consensus       166 ~~~~~~~~~~i~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  237 (461)
                      +++++.+++++++++++++  ++++        .++++|+++|++.|..++....++.|++|+++|++..+....+..+|
T Consensus        96 ~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G  173 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999  8877        58889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--------hcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCC
Q 012519          238 NAIGLVLSPILMS--------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHK  309 (461)
Q Consensus       238 ~~~g~~~~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (461)
                      ..++..+...+..        .+|||+.|++.+++.++. +......||+|+..+      .+   .+.       +  +
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~------~~---~~~-------~--~  234 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQ------QQ---HEQ-------A--A  234 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHH------HH---hhc-------c--c
Confidence            9999887776653        579999999887765442 222223344432110      00   000       0  0


Q ss_pred             CCCCChhHHHHhcchhhHHHHH-HHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHh
Q 012519          310 PATVIPPFRRLLSKMPTWSIIV-ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (461)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (461)
                      .+......+.++++|+.+...+ ..++..+..+....|.|.|+++.+|++...........++...++.++.|+++||++
T Consensus       235 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~g  314 (438)
T PRK09952        235 AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFG  314 (438)
T ss_pred             ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            0001112334667777666544 455556677788899999998888888765555555666777888899999999999


Q ss_pred             hcCcchhhhHHHHHHHhhHHHHHHHH--HH-hcc-ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          389 QRGTSVTLTRKILQSIGFIAPGIALI--GL-TAA-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      ||       + .+. .+.+...+..+  .. ... +.....+...++..+..+...+..+.+..|.+|. .|+++.|
T Consensus       315 rr-------~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g  382 (438)
T PRK09952        315 RR-------R-VYI-TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAG  382 (438)
T ss_pred             ch-------H-HHH-HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHh
Confidence            88       2 222 22222222211  11 112 2222222233334445555566778888998885 5766554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=2.1e-31  Score=253.77  Aligned_cols=262  Identities=19%  Similarity=0.186  Sum_probs=223.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      .+....+..+..........+.+|.+.+|+|.+..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   83 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA   83 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            34555667777777777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 012519          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (461)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~  259 (461)
                      +++++  +|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+.+..|||+.|+
T Consensus        84 l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~  161 (382)
T PRK10091         84 MFTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL  161 (382)
T ss_pred             HHHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence            99999  9999999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHH
Q 012519          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (461)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (461)
                      +.+++.++..+..++..||.+++.+.    +                      .... .+.++++..|...+..++....
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~~~~~~~----~----------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~  214 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDIRDEAKG----G----------------------LREQ-FHFLRSPAPWLIFAATMFGNAG  214 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCccccc----C----------------------HHHH-HHHhcChHHHHHHHHHHHHHHH
Confidence            99988777666656556664321110    0                      0011 2456777777766666655555


Q ss_pred             HHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      .+....+++.++.+.+|+++.+.+++.....++.++++++.+++.||++++
T Consensus       215 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~  265 (382)
T PRK10091        215 VFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL  265 (382)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch
Confidence            566667778888877899999999999999999999999999999999887

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=4.4e-32  Score=263.44  Aligned_cols=355  Identities=16%  Similarity=0.117  Sum_probs=255.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      .++|.++..+.+...........++..+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            34577777777777766666677888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccHHHHHH-HHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012519          175 SLATFLTPWAADTSLLALLA-MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (461)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  253 (461)
                      +++.++++++  ++++.+++ .|+++|++.+...+...+++.++++ ++|++++++...+..+|..++|++++.+.+.+|
T Consensus        95 ~~~~~~~~~~--~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        95 SLGMILASFS--SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHh--hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            9999999999  99998875 5799999999777788888999995 789999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCcc-ccCCCCCCCCCChhHHHHhcchhhHHHHHH
Q 012519          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPL-LMGNKHKPATVIPPFRRLLSKMPTWSIIVA  332 (461)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (461)
                      ||+.|++.+++.++..+..++..++.+.++....+++ +.......... ......++.....++ +++++|+++...+.
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  249 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-EGLPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYLSG  249 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-ccCCCCCccccccccchhhhhhhhcch-HHhcCchHHHHHHH
Confidence            9999999998887666555555443221110000000 00000000000 000000000011122 57889999988888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHH
Q 012519          333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA  412 (461)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (461)
                      .++.....+....++|.|+++ .|++..+++.+.++.+++.++++++.|++.||...++.     ++..+..+.+..++.
T Consensus       250 ~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-----~~~~~~~~~~~~~l~  323 (455)
T TIGR00892       250 NVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH-----VQYLFSFALLFNGLT  323 (455)
T ss_pred             HHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH-----HHHHHHHHHHHHHHH
Confidence            888888888888899999987 69999999999999999999999999999997422100     223333333333443


Q ss_pred             HHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          413 LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      ++.....++.+..+...++.+...+...+.......+..| +++|++.|
T Consensus       324 ~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g  372 (455)
T TIGR00892       324 HLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVG  372 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHh
Confidence            3333334444444444444445555555666677777765 46787765

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=3.2e-31  Score=256.62  Aligned_cols=331  Identities=15%  Similarity=0.102  Sum_probs=230.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHH-HHH-----HHHHHHhHhhhhhhhhhhcchHHHHHH
Q 012519           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQ-SSF-----LWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (461)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~-s~~-----~~~~~~~~~~~g~l~dr~Grr~~~~~~  170 (461)
                      +++....++++.+++++|...+++..|.+.++++.++.+.+.+. +..     .++..+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            45578888999999999999999999999999998887765443 322     233347889999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccHH--------HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHH
Q 012519          171 VALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (461)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  242 (461)
                      .++++++.++++++  ++++        .++++|+++|++.+...+....+++|++|+++|++++++...+.++|..+++
T Consensus        93 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         93 LSIMASGTLLIAFV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999  8877        4688999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHH--------hhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCC
Q 012519          243 VLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI  314 (461)
Q Consensus       243 ~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (461)
                      .+++.+.        +.+|||+.|++..+...+ .   ++. ++.+++.+    +..++   .        +.   .+..
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~---~~~-~~~~~e~~----~~~~~---~--------~~---~~~~  227 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-I---FLI-RRSLEETE----EFLAR---K--------HR---PSMR  227 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-H---HHH-HHhcCCCH----HHHHh---h--------hc---cccc
Confidence            8887763        467999999875443211 1   111 11111110    00000   0        00   0011


Q ss_pred             hhHHHHhcchhhHHH-HHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcc
Q 012519          315 PPFRRLLSKMPTWSI-IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (461)
Q Consensus       315 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (461)
                      ..++...++++.+.. ++..++....++....|.|.|+++.+|++..+.++...+..++++++.++.|+++||++||+  
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~--  305 (434)
T PRK15075        228 EIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP--  305 (434)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--
Confidence            224444556555543 33344455667778899999999888999888888888888999999999999999999882  


Q ss_pred             hhhhHHHHHHHhhHHHHHHHH---HHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          394 VTLTRKILQSIGFIAPGIALI---GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                            ...............   .....++........++...+.+...+....+..|..|+ +||++.|
T Consensus       306 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g  370 (434)
T PRK15075        306 ------VLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFS  370 (434)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchhee
Confidence                  222221111111111   111122222222222233334445555566777888875 5888765

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.2e-31  Score=257.44  Aligned_cols=354  Identities=20%  Similarity=0.232  Sum_probs=258.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      ++++..+..+.+..+...++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            34566667777778888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      +++.++.++.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..||
T Consensus        93 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        93 SVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHHHc--cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999998  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHh----hcCccc--cCCCCCCCCCChh-HHHHhcc---h
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILRE----KQKPLL--MGNKHKPATVIPP-FRRLLSK---M  324 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~-~~~~~~~---~  324 (461)
                      |+.|++.+++.++..++.+...|++++.....++++..+..++    ......  ..+.+.+...... .+.++++   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR  250 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence            9999998777776666666666776542211111111111110    000000  0000011111111 2223332   3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHH
Q 012519          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (461)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (461)
                      ..+.+.+..++.....+....+.|.+.++ +|+++.+.+.......++.+++.++.+++.||+++|         .....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~  320 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR---------VTALL  320 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---------HHHHH
Confidence            44455555666666777778888855554 699999999999999999999999999999999876         12122


Q ss_pred             hhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          405 GFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      ..+.............+........++.+.+.+...+....+..+..|+ ++|++.|
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g  377 (398)
T TIGR00895       321 LLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVG  377 (398)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            2222222222222233444444455555566666677788888888874 5887765

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.5e-34  Score=256.49  Aligned_cols=352  Identities=17%  Similarity=0.191  Sum_probs=271.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  173 (461)
                      .+..++.+.++++...++..|.+.+....+.+++.||++++..|++.+.+.+.+++++|++|+++|||.||+++.+|..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012519          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (461)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  253 (461)
                      +.++.++++++  ..||+++++|.+.|+|.+...++++++++|.+|..+|++++++++.+..+|..+|.+.+..+.+..+
T Consensus       108 W~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  108 WTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHH
Q 012519          254 -IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA  332 (461)
Q Consensus       254 -wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (461)
                       |||.|++.+++++++.++.+++.+|+++..+...+.+             .+........+++.+...+++.+....+.
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~-------------~~~~~~~ts~~kDl~~l~~~~v~v~~sl~  252 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGE-------------NKMVKPFTSVWKDLKVLAKIKVFVLSSLG  252 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCcccccccccccC-------------CcCCCCccchHHHHHHHHccCceeeehHH
Confidence             9999999999999999999998888765422111100             00112334456778888888888888888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHh---hCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhh--hHHHHHHHhhH
Q 012519          333 NAMHSWGFFVILSWMPIYFNFV---YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTL--TRKILQSIGFI  407 (461)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~--~~~~~~~~~~~  407 (461)
                      .....+...++..|.|.++..-   .|++..+..++..+...++.+|.+++|.++||+.++.++.-.  ........+..
T Consensus       253 ~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~  332 (493)
T KOG1330|consen  253 IIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAP  332 (493)
T ss_pred             HHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhh
Confidence            8888877777777777766543   356666777788888899999999999999998764322111  11122233333


Q ss_pred             HHHHHHHHHhccCh--hHHHHHHHHHHHHHHhhhhhchhHhhhhhc-ccccccccC
Q 012519          408 APGIALIGLTAAKS--PVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHG  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~g  460 (461)
                      .....+.++.....  .+..+++++++....-+..+.......++. |++|.++..
T Consensus       333 ~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a  388 (493)
T KOG1330|consen  333 LSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYA  388 (493)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHH
Confidence            33334443333322  233333334444444444445455555555 466776643

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=9.1e-31  Score=256.78  Aligned_cols=349  Identities=13%  Similarity=0.081  Sum_probs=259.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      .+++++++.++..++...+.+.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            34566777888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 012519          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (461)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~  259 (461)
                      +++++  ++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.++.|||+.|+
T Consensus        91 ~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         91 FCALS--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHh--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            99888  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHH----------HHhhcC-ccc------------------cCCCCCC
Q 012519          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI----------LREKQK-PLL------------------MGNKHKP  310 (461)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~------------------~~~~~~~  310 (461)
                      +......+..+......|+.+...++.+.......          ...... .+.                  ..+++..
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN  248 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98887777666666665554433222221110000          000000 000                  0000111


Q ss_pred             CCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      +.+..+. +++|||+++...+..++..........+.|.|++..+|.++.++++......++.+++.++.+++.||+++|
T Consensus       249 ~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~  327 (471)
T PRK10504        249 NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR  327 (471)
T ss_pred             CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            1222333 588999999988888888888777788899999987899999999999888888888889999999999987


Q ss_pred             CcchhhhHHHHHHHhhHHHHHHHHHHhcc--Ch-hHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          391 GTSVTLTRKILQSIGFIAPGIALIGLTAA--KS-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                             +  ++..+..+.++....+...  .. .+......++.+.+.+...+.......+..| +.+|.++|
T Consensus       328 -------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  392 (471)
T PRK10504        328 -------R--VLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS  392 (471)
T ss_pred             -------H--HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHH
Confidence                   2  2233333333332222221  12 2212222233334445555566666666666 55777654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=2.2e-30  Score=248.10  Aligned_cols=330  Identities=16%  Similarity=0.141  Sum_probs=251.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH
Q 012519           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (461)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  176 (461)
                      .++.+.+..+..++..+....+.+.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||+++.++.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            34455555555556666777788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 012519          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~  256 (461)
                      +.+++.++  ++++.+++.|++.|++.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.+..|||+
T Consensus        86 ~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         86 GTLVALFA--HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHH--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            99999888  9999999999999999998888888999999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHH
Q 012519          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (461)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (461)
                      .|++.++..++..++..+..||++++.++.                        .....++++.+++|+++...+..+..
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADARR------------------------TRVLASYRTLLSNRRFNCYLLMLIGT  219 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccch------------------------hHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            999988877766655555566654321110                        00123566788898888776666666


Q ss_pred             HHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHH
Q 012519          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (461)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (461)
                      .........+.+.++++.+|+++.+.+++.....++.+++.++.+++.||.+++        ............+.+...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~  291 (394)
T PRK11652        220 LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIP  291 (394)
T ss_pred             HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence            666666677788899888899998888888887788888888888888888743        122112222222222211


Q ss_pred             hc--cChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          417 TA--AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       417 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      ..  ..+.+......++.+.+.+...+.......+..|+++|++.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~  337 (394)
T PRK11652        292 GWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGA  337 (394)
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            11  123333344444555555666777777778888887777654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=6.2e-31  Score=250.68  Aligned_cols=318  Identities=15%  Similarity=0.185  Sum_probs=244.5

Q ss_pred             HHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHH
Q 012519          114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALL  193 (461)
Q Consensus       114 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~  193 (461)
                      ...++.+.+|.+.+++|+++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++  ++++.++
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~   83 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQLI   83 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 012519          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (461)
Q Consensus       194 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  273 (461)
                      +.|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+.+..+||+.|++.+++.++..++..
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888877766666


Q ss_pred             HhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012519          274 SATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF  353 (461)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (461)
                      +..||++++.++.+                    .+.+....++++.+++|.++...+..++.....+....+.|.++.+
T Consensus       164 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (377)
T PRK11102        164 FFIPETLPKERRQP--------------------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIE  223 (377)
T ss_pred             HhCCccCcccccCC--------------------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            66666543211100                    0001112355678889988888777777777777778888888888


Q ss_pred             hhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhh-HHHHHHHHHHhccC-hhHHHHHHHHH
Q 012519          354 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTAAK-SPVMASAWLTL  431 (461)
Q Consensus       354 ~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~  431 (461)
                      .+|+++.+.+.+.....++.+++.++.|++.||+++|       +........ ...++.+......+ ..+.......+
T Consensus       224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (377)
T PRK11102        224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL-------NMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAA  296 (377)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            8899999999999999999999999999999999988       222221111 11222222221111 22222222223


Q ss_pred             HHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          432 AIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      ..+..+...........+..|+++|++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  325 (377)
T PRK11102        297 FVGCVSMISSNAMAVILDEFPHMAGTASS  325 (377)
T ss_pred             HHHHHHHhhHHHHHHHhccccccchHHHH
Confidence            33333333444455566777877777654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=2.4e-30  Score=250.83  Aligned_cols=289  Identities=19%  Similarity=0.243  Sum_probs=226.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH
Q 012519           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (461)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  176 (461)
                      ++..+..+.+.+...+.+...+....|.+.+ +|.+..+.+++.+++.++..++.++.|+++||+|||++++.+.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4566677777777777777777888888776 599999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccc--cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcC
Q 012519          177 ATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAG  253 (461)
Q Consensus       177 ~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~g  253 (461)
                      +.++.++.+  .++++.+++.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+.+.+.+ ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            988876641  14678888999999999999999999999999999999999999999999999999888776544 578


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChh-HHHHhcchhhHHHHHH
Q 012519          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP-FRRLLSKMPTWSIIVA  332 (461)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  332 (461)
                      ||+.|++.++++++..+..+++.||+|++.+..+.++.+   ++..... .++.+.+...... .+.+++++.+|...+.
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR---NDYPDDY-NEKAEQELTAKEIFMQYVLPNKLLWYIAIA  259 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc---ccccccc-ccccccccchHHHHHHHHccCchHHHHHHH
Confidence            999999999988887776667777765432111100000   0000000 0000000011111 2347889999998888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      .++.....+....|+|.|+++..|+++.++++...+..+.++++.+++|++.||++++
T Consensus       260 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       260 NVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            8888888888899999999998899999999999999999999999999999999755

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.7e-31  Score=250.47  Aligned_cols=296  Identities=19%  Similarity=0.237  Sum_probs=254.8

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhhhH-hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHH
Q 012519           89 FLEFITSERVKVVSMLALALALCNADRVVMS-VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM  167 (461)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~  167 (461)
                      .+...++-.+.++..++..++....+...++ ..+..+.+|.+....+.+++.+++.++++++.+++|.+.||++..+.+
T Consensus        35 ~~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l  114 (495)
T KOG2533|consen   35 ERKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGL  114 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHH
Confidence            3344455567777788888888888876664 345557899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          168 AWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (461)
Q Consensus       168 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~  247 (461)
                      ....+++++..++....  +|++.+++.|++.|+..+..+|....+++.|+.+++|+..++++.+..++|.++|.+++..
T Consensus       115 ~~~~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g  192 (495)
T KOG2533|consen  115 SVSGILWGLFGFLTAAV--HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYG  192 (495)
T ss_pred             HHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHH
Confidence            99999999988888778  9999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HH------hhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHh
Q 012519          248 LM------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLL  321 (461)
Q Consensus       248 l~------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (461)
                      +.      ...||||.|++.++++++..++.++.+|+.|++.+-..++|.....++.++..  ....+++..+..+++.+
T Consensus       193 ~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~--~~~~~~~~~~~~~~~a~  270 (495)
T KOG2533|consen  193 VFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESP--SGGIENKFKWKGFKEAL  270 (495)
T ss_pred             hhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhcc--CCCcccccCHHHHHHHH
Confidence            63      35689999999999999999999999999999876666666443333222211  11111225667889999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHh
Q 012519          322 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (461)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (461)
                      ++|.+|...+..++.....+++.+|+|.|+++..|++..+++.+..+..++++++.+++|+++||++
T Consensus       271 ~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  271 KDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             hchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999965799999999999999999999999999999963

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=3.9e-30  Score=246.26  Aligned_cols=264  Identities=16%  Similarity=0.112  Sum_probs=220.9

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh
Q 012519          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  181 (461)
                      .+..+..+........+.+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||++++.+.++..++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~   85 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC   85 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            34444555555555666788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (461)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  261 (461)
                      .++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..|||+.|++.
T Consensus        86 ~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         86 SLA--ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             HHh--CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            998  999999999999999999999999999999999999999999999999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (461)
                      +++.++..++.+...||+++++++.                       +....+..++.+++++++...+...+......
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPARAPA-----------------------ASSKPRENSESLLNRFFLSRLVITTLSVTVIL  220 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccCC-----------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9888877776666666654321100                       00111234567788887776665555555555


Q ss_pred             HHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      ....+.|.++++.+|+++.+.+.+.....++.+++.++.+++.||+++|
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~  269 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR  269 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            6667778888888899998999999999999999999999999999987

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=9.4e-30  Score=244.39  Aligned_cols=322  Identities=19%  Similarity=0.125  Sum_probs=243.2

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc
Q 012519          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  183 (461)
                      +.+...+..+....+.+.+|.+.+++|.++++.+++.+++.++..++.+++|+++||+|||+++..+.++..++.+++++
T Consensus        11 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   90 (401)
T PRK11043         11 LAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW   90 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            33334445566677888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 012519          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (461)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  263 (461)
                      +  ++++.+++.|+++|++.+...+...+++.|++|+++++++.+.......+|..++|.+++.+.++.|||+.|++.++
T Consensus        91 ~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~  168 (401)
T PRK11043         91 V--ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFA  168 (401)
T ss_pred             h--cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            9  99999999999999998888888889999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 012519          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (461)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (461)
                      +.++..+..++..++++++ ++                         +....++++++++|+++...+...+....++..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (401)
T PRK11043        169 ITLLLILPTLRLKPSKKAR-KQ-------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAW  222 (401)
T ss_pred             HHHHHHHHHHHcCCCCCcc-cc-------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence            8877666555543332211 10                         001135668888988887666666666667777


Q ss_pred             HHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHh--ccCh
Q 012519          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--AAKS  421 (461)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  421 (461)
                      ..+.|.++++ +|+++.+.++......++.+++.++.+++.||+++|+.      .........+....+....  ..+.
T Consensus       223 ~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  295 (401)
T PRK11043        223 LTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL------LPWLLVLFAVSVIAIWLASLLSHPS  295 (401)
T ss_pred             HHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH------HHHHHHHHHHHHHHHHHHHHhccCc
Confidence            8889998877 69999889988888788889999999999999987721      0111111112222221111  1223


Q ss_pred             hHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      ....+....+..+..+...+.......+..|+++|++.|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  334 (401)
T PRK11043        296 LVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAA  334 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHH
Confidence            333333333444455555566566666667888887765

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=3.8e-30  Score=245.15  Aligned_cols=319  Identities=17%  Similarity=0.094  Sum_probs=237.2

Q ss_pred             HHHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHH-HHHHHHHHHHHhhc
Q 012519          106 LALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW-GVALWSLATFLTPW  183 (461)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~  183 (461)
                      +.+++..+......+.+|. +.+++|.+..+.|++.+++.+...+.+++.|+++||+||||.+++ +.++..++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            3456666666777777776 578899999999999999999999999999999999999887654 56666677788888


Q ss_pred             cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARA--VAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (461)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  261 (461)
                      +  ++++.+++.|+++|.+.+...|...+++.|+.|+++|+++  .++...+.++|..+||++++.+.+..|||+.|++.
T Consensus        84 ~--~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        84 N--RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             c--chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            8  9999999999999988888888888999999887777654  67888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (461)
                      +++.++..++.++..||.|++.++..                         ...+.++.+++|+++...+..++......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYPRGAPGAL-------------------------TRLEVRGLLASRDTRLLFVACTLMWGCNI  216 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcccCccccc-------------------------CcchhhhhhcCcchHHHHHHHHHHHHHHH
Confidence            98888777777766776554321100                         00123346677777766666666555556


Q ss_pred             HHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccCh
Q 012519          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS  421 (461)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (461)
                      ....++|.|+++.+|.++.+.+.+.....+..+++.++.|++.||+++|+        .+ ..+.+...+........++
T Consensus       217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~--------~~-~~~~~~~~~~~~~~~~~~~  287 (375)
T TIGR00899       217 LYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR--------LM-LLAALAGVAFYTGLAADNS  287 (375)
T ss_pred             HHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh--------HH-HHHHHHHHHHHHHHHHHHH
Confidence            66778899998888999999988887777778888999999999999882        22 2222333333333333334


Q ss_pred             hHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      .+......++.+.+.+...+....+.++..|+++++++|
T Consensus       288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  326 (375)
T TIGR00899       288 LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATT  326 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence            443333334444445555666677788888887776654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=5.3e-30  Score=245.69  Aligned_cols=267  Identities=12%  Similarity=0.044  Sum_probs=208.4

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh
Q 012519          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (461)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  182 (461)
                      ...++.++...........++.+.+++|.++.+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+++.
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~   96 (402)
T TIGR00897        17 WGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFI   96 (402)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            33444444444433444456667789999999999999999999999999999999999999999999999998876543


Q ss_pred             ---ccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCchhHH
Q 012519          183 ---WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN-AIGLVLSPILMSQAGIFGPF  258 (461)
Q Consensus       183 ---~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~gwr~~f  258 (461)
                         +. .++++.+++.|+++|++.+...+...+.+.+++|+++|++++|+.+++.++|. .++|++++.+.+.+||+..+
T Consensus        97 ~~~~~-~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~  175 (402)
T TIGR00897        97 VFGLG-HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTL  175 (402)
T ss_pred             HHhcc-CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence               22 15788999999999999988888888889999999999999999999999997 68999999998888987776


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHH
Q 012519          259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (461)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (461)
                      +......++..++.++..++.+++.+..++                   .+.++....+++++|+|.++...+..++...
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (402)
T TIGR00897       176 WSALAFVLTGGVIALFSNKDIFTPQHMQTR-------------------EKFSELGKAATILFTNPNVLLGGMVRIINTI  236 (402)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcccccCC-------------------cchhhHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            665544444444444444443221110000                   0001112346678999999988888888888


Q ss_pred             HHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      ..+...++.|.|+++ +|++..+.+.......++..++.++.|+++||+++|
T Consensus       237 ~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  287 (402)
T TIGR00897       237 GLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM  287 (402)
T ss_pred             HHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            888899999999977 799999988888888999999999999999999977

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=6.3e-30  Score=252.00  Aligned_cols=354  Identities=14%  Similarity=0.097  Sum_probs=237.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhc-----CCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAH-----GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA  168 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~  168 (461)
                      .+.++.++.++.++.+.++++....+.+.|.+.+++     +.+..+.+++.+.+.++..++.+++|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            456777888899999999999999999988887652     345667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccc------HHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHH
Q 012519          169 WGVALWSLATFLTPWAADTS------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (461)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  242 (461)
                      +++++..++.++++++  ++      ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|.++++
T Consensus        91 ~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~  168 (502)
T TIGR00887        91 MELIIMIIATVASGLS--PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA  168 (502)
T ss_pred             HHHHHHHHHHHHHHHc--cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887  54      789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-----------------------hcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC--CcchhHHHH-HHH
Q 012519          243 VLSPILMS-----------------------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP--QISKYELEY-ILR  296 (461)
Q Consensus       243 ~~~~~l~~-----------------------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~  296 (461)
                      .++..+..                       ..+||+.|.+.++++++..+ ..+..||+|+...  ..++++..+ ..+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~~~~~~~~a~~~~~~  247 (502)
T TIGR00887       169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTADVAKDVEQAASDMSA  247 (502)
T ss_pred             HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence            98876542                       23799999887777665444 4556799987421  111111111 111


Q ss_pred             hhcCcc--ccCC----CCCCCCCChhHHHHhcc---hh----hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccc
Q 012519          297 EKQKPL--LMGN----KHKPATVIPPFRRLLSK---MP----TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQAS  363 (461)
Q Consensus       297 ~~~~~~--~~~~----~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  363 (461)
                      ......  ..++    .++++....++++++++   ++    ++......+...+.+++...|.|.++++ .|++....+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~  326 (502)
T TIGR00887       248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAAT  326 (502)
T ss_pred             HhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccc
Confidence            111000  0000    00011112356666653   22    1222233444455666777889999976 588765432


Q ss_pred             h------------hhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhcc--C-hhHHHHHH
Q 012519          364 W------------FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA--K-SPVMASAW  428 (461)
Q Consensus       364 ~------------~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~  428 (461)
                      .            ...+..++.+++.++.++++||+|||       +  ++..+..+.++++.++...  . ........
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR-------~--~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  397 (502)
T TIGR00887       327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK-------P--IQLMGFFILTVLFFVLGFAYNHLSTHGFLAI  397 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch-------h--HHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence            2            12333456677889999999999998       2  2222333333322222211  1 11111111


Q ss_pred             HHHHHHHHhh-hhhchhHhhhhhccc-ccccccC
Q 012519          429 LTLAIGMKSF-SHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       429 ~~~~~~~~~~-~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      .++..++.+. ..+..+.+..|++|. .|+++.|
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g  431 (502)
T TIGR00887       398 YVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHG  431 (502)
T ss_pred             HHHHHHHHhcCCCchhhhhhhccCchhHHHHHHH
Confidence            1122222222 234566778899985 4888766

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.98  E-value=1.5e-29  Score=249.93  Aligned_cols=347  Identities=15%  Similarity=0.135  Sum_probs=237.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      +++++.+..++++.+++.++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45667888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      +++.++.+++  ++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.++.+|
T Consensus        96 ~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         96 SVGTLACGFA--PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc-chhHHHHHHHhhcCccccCCCCCCCCCChh---------HHHHh---
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQKPLLMGNKHKPATVIPP---------FRRLL---  321 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---  321 (461)
                      |+.|++.++..++ .++.....|+.++..++. ..++.+...+....        .++.....         ....+   
T Consensus       174 ~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  244 (496)
T PRK03893        174 RALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYR--------GEHRIINILLTLAAAAALWFCFAGN  244 (496)
T ss_pred             HHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHHHHhc--------chhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999875443332 223333334433211100 00000000000000        00000000         00000   


Q ss_pred             ----------------------------cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHH
Q 012519          322 ----------------------------SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM  373 (461)
Q Consensus       322 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  373 (461)
                                                  +.+......+..+......+....++|.|+++.+|++..+++.+.+...++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~  324 (496)
T PRK03893        245 LQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGA  324 (496)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence                                        0000111111111111111235578999998778999999999999999999


Q ss_pred             HHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHh-ccChhHHHH-HHHHHHHHHHhhhhhchhHhhhhhc
Q 012519          374 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-AAKSPVMAS-AWLTLAIGMKSFSHSGFLVNLQEIA  451 (461)
Q Consensus       374 ~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  451 (461)
                      +++.++.|++.||+++|       + .+ ..+.+..++..+... ......... ...++..+......+....+..+..
T Consensus       325 ~~g~~~~g~l~dr~g~~-------~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (496)
T PRK03893        325 AVGCCVGGFLGDWLGTR-------K-AY-VCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF  395 (496)
T ss_pred             HHHHHHHHHHHHHhcch-------H-HH-HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC
Confidence            99999999999999987       2 22 222222222222222 122222111 1112111222222344556677777


Q ss_pred             c-cccccccCC
Q 012519          452 P-QYSGVLHGI  461 (461)
Q Consensus       452 p-~~~g~~~gl  461 (461)
                      | +++|+++|+
T Consensus       396 ~~~~~g~~~~~  406 (496)
T PRK03893        396 DTEQRAAGLGF  406 (496)
T ss_pred             CHHHhhcccch
Confidence            7 468888764

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.98  E-value=3.6e-30  Score=253.32  Aligned_cols=349  Identities=17%  Similarity=0.182  Sum_probs=234.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhc--------CCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAH--------GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII  166 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  166 (461)
                      +...+.+++..++.+..+++...+++..|.+++++        +.+..+.+++.+++.++.+++++++|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34566777778889999999999999999888877        8889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc----------cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHH
Q 012519          167 MAWGVALWSLATFLTPWAA----------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS  236 (461)
Q Consensus       167 ~~~~~~~~~i~~~~~~~~~----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  236 (461)
                      ++++.++.+++.++++++.          .++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            9999999999888776530          123567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH--------hhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CcchhHHHHHHHhhcCccccCCC
Q 012519          237 GNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREKQKPLLMGNK  307 (461)
Q Consensus       237 G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  307 (461)
                      |..+++.+++.+.        +..|||+.|++.+++.++..+. .++.||+|+... +.+.++.+...++....      
T Consensus       168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~------  240 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGN------  240 (479)
T ss_pred             HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCC------
Confidence            9999988776654        3568999999988877776544 455677764321 11122221111111100      


Q ss_pred             CCCCCCChhHHHHhc-----chhhH-----H----HHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHH
Q 012519          308 HKPATVIPPFRRLLS-----KMPTW-----S----IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM  373 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~-----~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  373 (461)
                      .+.+....+.++.++     .+.++     .    .....+......+...++.|.+.++ .|++.....+.....++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~  319 (479)
T PRK10077        241 TLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVIN  319 (479)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHH
Confidence            000000001111111     00100     0    0111111122233445667777766 5888777777777888889


Q ss_pred             HHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHh--c-cChh-HHHHHHHHHHHHHHhh-hhhchhHhhh
Q 012519          374 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--A-AKSP-VMASAWLTLAIGMKSF-SHSGFLVNLQ  448 (461)
Q Consensus       374 ~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~  448 (461)
                      +++.+++++++||++||         .++..+.++.+++.+.+.  . .+.. ......+++..+..+. ..+..+.+..
T Consensus       320 ~i~~~~~g~l~dr~g~r---------~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (479)
T PRK10077        320 LTFTVLAIMTVDKFGRK---------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS  390 (479)
T ss_pred             HHHHHHHHHHHHHhcCh---------HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence            99999999999999988         233344444444333322  1 1111 1222222222222222 2356678888


Q ss_pred             hhcc-cccccccC
Q 012519          449 EIAP-QYSGVLHG  460 (461)
Q Consensus       449 ~~~p-~~~g~~~g  460 (461)
                      |..| ++||++.|
T Consensus       391 e~~p~~~r~~~~g  403 (479)
T PRK10077        391 EIFPNAIRGKALA  403 (479)
T ss_pred             hhCChhHHHHHHH
Confidence            9987 46888765

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.98  E-value=1e-29  Score=244.12  Aligned_cols=319  Identities=21%  Similarity=0.174  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  177 (461)
                      +.+..+.+..++..++..+..+.+|. +.+++|.++.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            44555677777777777788888886 67889999999999999999999999999999999999999999999988887


Q ss_pred             HHHhhccc------cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012519          178 TFLTPWAA------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (461)
Q Consensus       178 ~~~~~~~~------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  251 (461)
                      .++++++.      ..+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+|+.+++.+.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            66654431      025678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHH
Q 012519          252 AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIV  331 (461)
Q Consensus       252 ~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (461)
                      +||++.+++.+++.++..+.. ...|+.+++.     +                   +    ..++++.++  +++....
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~-------------------~----~~~~~~~~~--~~~~~~~  223 (399)
T PRK05122        175 GGLAGLGLLIMLLALLGLLLA-RPRPAVPPVK-----G-------------------E----RLPFRRVLG--RVWPYGM  223 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH-hcCCCCCCCC-----c-------------------c----chhHHHHHH--HHHHHHH
Confidence            999999887666554433222 1112111100     0                   0    012223332  2222233


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHH
Q 012519          332 ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (461)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (461)
                      ...+..+.+.....+++.|+.+. |+  ...+.......++.+++.++.|++.||+++|       +  ....+..+.++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-------~--~~~~~~~~~~~  291 (399)
T PRK05122        224 GLALASIGFGTIATFITLYYAAR-GW--DGAALALTLFGVAFVGARLLFGNLINRLGGL-------R--VAIVSLLVEIL  291 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-cc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccH-------H--HHHHHHHHHHH
Confidence            33344455666777888888763 65  3456667778888899999999999999877       2  22333344444


Q ss_pred             HHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          412 ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      +.......++.+..+...++.+.+.+...+.......+..| +++|++.|
T Consensus       292 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g  341 (399)
T PRK05122        292 GLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALG  341 (399)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44444444444444333344444444444444455555555 56887765

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=2e-29  Score=240.50  Aligned_cols=325  Identities=15%  Similarity=0.118  Sum_probs=234.5

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh
Q 012519          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (461)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  182 (461)
                      .++++.++..+.........+.+.++++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++.++++
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            34566666666555556666677889999999999999999999999999999999999999999999999999988877


Q ss_pred             ccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 012519          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (461)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~  262 (461)
                      ++  .+.   ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++.+.+.. |+..+.+.+
T Consensus        87 ~~--~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~  160 (393)
T PRK11195         87 FG--IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCA  160 (393)
T ss_pred             HH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            77  554   778999999999999999999999999999999999999999999999999999998864 777777766


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHH
Q 012519          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (461)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (461)
                      ...++.. +..+..||++++.+..+.+..... ++               ....++.++++|.+.......++.......
T Consensus       161 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  223 (393)
T PRK11195        161 LIYLLAA-LFNLFIPRLGARRPGQSWNPIALL-RD---------------FFHACRVLWRDKLGRFSLAGTTLFWGAGAT  223 (393)
T ss_pred             HHHHHHH-HHHhcCCCCcccccccCCCHHHHH-HH---------------HHHHHHHHHhCchhHHHHHHHHHHHHHHHH
Confidence            5544433 334455655433221111110000 00               012345678888877665555555555666


Q ss_pred             HHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChh
Q 012519          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (461)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (461)
                      ....+|.|+++.+|.++.+.|++.....++.+++.++.+++.||.+++       +  .+..+. ..+...+.+...++.
T Consensus       224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~-------~--~~~~g~-~~~~~~~~~~~~~~~  293 (393)
T PRK11195        224 LRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL-------R--VLPAGI-LMGLVVLLMALQHSL  293 (393)
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-------c--hHHHHH-HHHHHHHHHHHHhHH
Confidence            677788888888999999999999999999999999999999887665       1  222232 223333333333344


Q ss_pred             HHHHHHHHHHHHHHhhhhhchhHhhhhhcccc--cccccC
Q 012519          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQY--SGVLHG  460 (461)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~g~~~g  460 (461)
                      +......++.+.+.+...+...+..++..|++  +|++.|
T Consensus       294 ~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a  333 (393)
T PRK11195        294 LPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIA  333 (393)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHH
Confidence            43333444444555555566667777777764  466543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=2e-30  Score=255.30  Aligned_cols=294  Identities=17%  Similarity=0.115  Sum_probs=210.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCC--------chhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHH
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWS--------RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII  166 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  166 (461)
                      ++.+....++.++.++..++...+....+.+.++++.+        ..+.+++.+++.++..++++++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            33445555666677778888888999999998888777        8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012519          167 MAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS  245 (461)
Q Consensus       167 ~~~~~~~~~i~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~  245 (461)
                      ++++.++..++.+++.+.. ..+++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999885541 145678999999999999999999999999999999999999999999999999999998


Q ss_pred             ---HHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CcchhHHHHHHHhhcCcccc----------------C
Q 012519          246 ---PILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREKQKPLLM----------------G  305 (461)
Q Consensus       246 ---~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------~  305 (461)
                         ..+.+..+||+.|++.++..++.. +..++.||+|+... +.+.++.++..++.......                .
T Consensus       184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (481)
T TIGR00879       184 SGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI  262 (481)
T ss_pred             HHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence               665567899999999666555544 34445566653211 01111111111000000000                0


Q ss_pred             CCCCCCCCChhHHHHhc---chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHH
Q 012519          306 NKHKPATVIPPFRRLLS---KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGL  382 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~  382 (461)
                      +.+..+.....+.+.++   .+.++...+..+...........+.|.++++ .|++..+.+....+..++.+++.++.|+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~  341 (481)
T TIGR00879       263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIF  341 (481)
T ss_pred             HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000011112222222   2223333333333333344556677777766 5999888888888999999999999999


Q ss_pred             hhhhHhhc
Q 012519          383 LSDMLIQR  390 (461)
Q Consensus       383 l~dr~~~~  390 (461)
                      +.||+++|
T Consensus       342 l~d~~~~~  349 (481)
T TIGR00879       342 LVDRFGRR  349 (481)
T ss_pred             HHHHhcch
Confidence            99999988

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=6e-29  Score=237.67  Aligned_cols=322  Identities=17%  Similarity=0.140  Sum_probs=242.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  180 (461)
                      +.++++..++.++.....++..|.+++++|.+..+.|++.+.+.+++.+++++.|++.||+|||++++++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            45667777777888888899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhcc-ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 012519          181 TPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------  251 (461)
Q Consensus       181 ~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------  251 (461)
                      +..+ ..++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            5443 1268999999999999999999999999999999999999999999999999999999999887532        


Q ss_pred             ------------------cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCC
Q 012519          252 ------------------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATV  313 (461)
Q Consensus       252 ------------------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (461)
                                        .+||++|++.+++.++..++..+. +. |+..+. + +                   ++...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~-p~~~~~-~-~-------------------~~~~~  221 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KM-PALNHS-D-A-------------------KQISF  221 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCCCcc-c-c-------------------ccccc
Confidence                              369999999888777655444322 21 111100 0 0                   00011


Q ss_pred             ChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-CCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCc
Q 012519          314 IPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY-HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT  392 (461)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~  392 (461)
                      ..+.++++|+|.++...+..+++.........+++.|.++.. +.+...++...+....+..+|+++++++.||+++|  
T Consensus       222 ~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~--  299 (410)
T TIGR00885       222 SASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH--  299 (410)
T ss_pred             hhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--
Confidence            124457889999999888888888888888899999997632 33333445566666678899999999999999887  


Q ss_pred             chhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccccc
Q 012519          393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS  455 (461)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  455 (461)
                            +. +.+..+...+..++....++... ...+.+.+++.+..++..++...+..+++.
T Consensus       300 ------~~-l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~  354 (410)
T TIGR00885       300 ------KV-LMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDT  354 (410)
T ss_pred             ------HH-HHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                  23 33333333333343444444333 333444445555555777777777776653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=1e-29  Score=245.33  Aligned_cols=323  Identities=17%  Similarity=0.130  Sum_probs=238.9

Q ss_pred             HHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc---
Q 012519          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---  183 (461)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---  183 (461)
                      ..++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+.   
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  104 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF  104 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence            34555556667788889999999999999999999999999999999999999999999999888887777665432   


Q ss_pred             cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 012519          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (461)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  263 (461)
                      ...++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+..+|++.|++.++
T Consensus       105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            11278899999999999999988899999999999999999999999999999999999999999998999999998877


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 012519          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (461)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (461)
                      ..++..++.+ ..|+.++++++.+                    +..+.....++.++++|.++...+..++... ....
T Consensus       185 ~~~~~~~~~~-~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  242 (417)
T PRK10489        185 GTFITLLPLL-RLPALPPPPQPRE--------------------HPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAV  242 (417)
T ss_pred             HHHHHHHHHH-hCCCCCCCCcccc--------------------cchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhH
Confidence            7666555444 3444332211000                    0000112245567788887766555544333 4567


Q ss_pred             HHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhH
Q 012519          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (461)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (461)
                      ..++|.|+++.+|.++...+++.+...++.+++.++.+++.||.+++         ..+..+.++.++.++.+...++..
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~  313 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG---------LLMLLSTLGSFLAVGLFGLMPMWI  313 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc---------hHHHHHHHHHHHHHHHHHccchHH
Confidence            78899999997899999999999999999999999999999885444         223334444444444444444444


Q ss_pred             HHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      ......++.+.+.+...+....+.++..|+ +||+++|
T Consensus       314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g  351 (417)
T PRK10489        314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRING  351 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            333444444444455555666778888875 5888765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=2.7e-28  Score=233.18  Aligned_cols=312  Identities=14%  Similarity=0.072  Sum_probs=229.1

Q ss_pred             HHHHhhhHhh-hhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHH
Q 012519          112 NADRVVMSVA-IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL  190 (461)
Q Consensus       112 ~~~~~~~~~~-~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  190 (461)
                      ........+. .+.+.+++|.+..++|++.+.+.++..+.+++.|+++||+|||++++++.++.+++.+++.+.  ++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~  100 (400)
T PRK11646         23 VLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--HEPW  100 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--ccHH
Confidence            3333344444 445678999999999999999999999999999999999999999999999999999999998  9999


Q ss_pred             HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 012519          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (461)
Q Consensus       191 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  270 (461)
                      .+++.|+++|++.+...+...+++.|++|+++|++++++.....++|..+||++++.+. .+|||+.|++.++..++..+
T Consensus       101 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i  179 (400)
T PRK11646        101 LLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAA  179 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999888999999999999999999999999999999999999999998 67999999998887776655


Q ss_pred             HHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 012519          271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY  350 (461)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (461)
                      +..+..|+.++++.                         +++...++++.+++|+++...+..+...........++|.|
T Consensus       180 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  234 (400)
T PRK11646        180 FNAWLLPAYKLSTV-------------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIM  234 (400)
T ss_pred             HHHHhCCccccccc-------------------------chhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            55555444211100                         00112356678889988876666555554445556788999


Q ss_pred             HHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhh-HhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHH
Q 012519          351 FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWL  429 (461)
Q Consensus       351 ~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (461)
                      +++. +.++.+.+++.+...++...+....+++.|| ++.+       +  .+..+.+..+++.+.+...++.+......
T Consensus       235 ~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~-------~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  304 (400)
T PRK11646        235 VNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE-------H--RLMAGLLIMSLSMFPIGMVSNLQQLFTLI  304 (400)
T ss_pred             HHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-------H--HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9886 4467778888777776666555555555554 4333       1  22334444444444444444444333333


Q ss_pred             HHHHHHHhhhhhchhHhhhhhcc-cccccccCC
Q 012519          430 TLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI  461 (461)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~gl  461 (461)
                      ++...+.+...+.......+..| +++|++.|+
T Consensus       305 ~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~  337 (400)
T PRK11646        305 CLFYIGSIIAEPARETLSASLADARARGSYMGF  337 (400)
T ss_pred             HHHHHHHHHHHccHHHHHHhcCCcccchhhhhH
Confidence            34444445555666777778776 578988763

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=3.9e-28  Score=231.32  Aligned_cols=258  Identities=16%  Similarity=0.130  Sum_probs=207.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  180 (461)
                      +..+.++.++.........+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566777778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 012519          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (461)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~  260 (461)
                      ++++  ++++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+.+...|...+ .
T Consensus        88 ~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~  164 (381)
T PRK03633         88 LGLM--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW-V  164 (381)
T ss_pred             HHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH-H
Confidence            9999  999999999999999999988988888889999999999999999999999999999999987754343333 3


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHH
Q 012519          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (461)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (461)
                      .+........+ ++. +.++++.+                     +  +   ...+.++.+++|.++......+.....+
T Consensus       165 ~~~~~~~~~~~-~~~-~~~~~~~~---------------------~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (381)
T PRK03633        165 TGLVLAAILPL-LFT-RILNQQAE---------------------N--H---DSTSIWPMLKLRQARLGVNGCIISGIVL  216 (381)
T ss_pred             HHHHHHHHHHH-HHh-cccCCCCC---------------------C--C---CCCCHHHHHHhcchHHHHHHHHHHHHHH
Confidence            22222221111 221 11111100                     0  0   0123456788888776655555555556


Q ss_pred             HHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      .....++|.|+++ .|.++...+.+.+...++.+++++..|++.||+++|
T Consensus       217 ~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~  265 (381)
T PRK03633        217 GSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL  265 (381)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence            6677889999987 599988899988899899999999999999999987

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.97  E-value=6.6e-30  Score=255.14  Aligned_cols=289  Identities=17%  Similarity=0.181  Sum_probs=227.7

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh
Q 012519          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  181 (461)
                      +...+..+.........+..++.+.++|+++..+.|++.+.+.++++++.++.|+++||+|||+++.+++++++++++++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44455677777777888999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccc-------------------------------------------------cccHHHHHHHHHHHhhhhhchhhHHHH
Q 012519          182 PWAA-------------------------------------------------DTSLLALLAMRAVVGLAEGVALPAMNN  212 (461)
Q Consensus       182 ~~~~-------------------------------------------------~~~~~~l~~~r~l~G~~~g~~~~~~~~  212 (461)
                      ++.+                                                 ...+..++++|+++|+|.+..++...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7752                                                 002567889999999999999999999


Q ss_pred             HHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------CchhHHHHHHHHHHHHHH
Q 012519          213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA----------------------GIFGPFVIFGLSGFLWVL  270 (461)
Q Consensus       213 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----------------------gwr~~f~~~~~~~~~~~~  270 (461)
                      ++.|++|+++|+++++++..+..+|..+|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988643                      277778888888877766


Q ss_pred             HHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCC-CCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 012519          271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPI  349 (461)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (461)
                      .++++.++.|+...+.+.+..+.......+...... ....+.....++++++||.++...+..++.....+++.+|+|.
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~  355 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK  355 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655554444432211111100000000000000000 0001112345778999999999999999999999999999999


Q ss_pred             HHHHhhCCCccccchhhhhhHH-HHHHHHHHHHHhhhhHhhc
Q 012519          350 YFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       350 ~~~~~~g~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~  390 (461)
                      |+++.+|+++.+++++..+..+ +.+++.+++|+++||++.+
T Consensus       356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            9999999999999999887776 5688999999999999865

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=1.8e-28  Score=234.80  Aligned_cols=317  Identities=17%  Similarity=0.144  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      +..+.++.++.........+.+|. +.+++|.|..++|++.+++.++..++++++|+++||+||||+++.+.+...++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            333444555566666677777775 6789999999999999999999999999999999999999999999888776654


Q ss_pred             Hh---hccc---cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012519          180 LT---PWAA---DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (461)
Q Consensus       180 ~~---~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  253 (461)
                      ..   +...   .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+||++++.+.++.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382         97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            32   2210   15789999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHH
Q 012519          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (461)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (461)
                      ||+.+.+..+..++.... ....|+.+++.+                        ++    .+.++.++  .++...+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------------------~~----~~~~~~~~--~~~~~~~~~  225 (392)
T PRK12382        177 FAALALTTMVLPLLAWAF-NGTVRKVPAHAG------------------------ER----PSLWSVVG--LIWKPGLGL  225 (392)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHhccCCCCCcc------------------------cC----chHHHHHH--HHHHhHHHH
Confidence            998877655443332221 111122111000                        00    01112221  122222223


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHH
Q 012519          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (461)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (461)
                      ++..........+.|.|+++. +++  ..+.......++.++++++.|++.||+++|+       ..  ..+....++..
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~--~~~~~~~~~~~  293 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFASK-GWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK-------VA--IVSLLVETVGL  293 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhc-CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-------eh--HHHHHHHHHHH
Confidence            333445556677888888774 665  3556666677778899999999999999873       12  22333333333


Q ss_pred             HHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      +.....++.+..+...++.+...+...+.......+..| +++|++.|
T Consensus       294 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g  341 (392)
T PRK12382        294 LLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALG  341 (392)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHH
Confidence            333334444433333344444444445555555566555 67888765

>TIGR00898 2A0119 cation transport protein

Probab=99.97  E-value=3.2e-29  Score=248.06  Aligned_cols=322  Identities=16%  Similarity=0.102  Sum_probs=228.5

Q ss_pred             hhhhhhhhhcCCC---chhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 012519          120 VAIVPLSLAHGWS---RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (461)
Q Consensus       120 ~~~~~i~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (461)
                      +..+.+.+|++++   ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++  ++++.++++|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence            5678899999999   8999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 012519          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (461)
                      ++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+   ||+.|++.+++.++..+.. ++.
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999998877653   9999999998887766655 566


Q ss_pred             CCCCCCCC-CcchhHHHHHHHh----hcCccc-----c--CCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHH
Q 012519          277 SSTPDRHP-QISKYELEYILRE----KQKPLL-----M--GNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (461)
Q Consensus       277 ~~~~~~~~-~~~~~~~~~~~~~----~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (461)
                      ||+|+... +.+.++..+..++    ......     .  ++....+.....+++++++|.++...+...+..+......
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            88775321 1111221111111    100000     0  0000011112467789999988777666555444433333


Q ss_pred             HhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChh--
Q 012519          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP--  422 (461)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  422 (461)
                      ..++.+..+ .+.+.   .......++..+++.++.+++.||+|||         ..+..+.++.+++.+.....++.  
T Consensus       344 ~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr---------~~~~~~~~~~~~~~l~~~~~~~~~~  410 (505)
T TIGR00898       344 YGLVLDLGN-LGGNI---YLDLFISGLVELPAKLITLLLIDRLGRR---------YTMAASLLLAGVALLLLLFVPVDLY  410 (505)
T ss_pred             HHHhccccc-cCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHcCCCch
Confidence            333333333 34432   2334455677788999999999999988         23334444444444444333322  


Q ss_pred             HHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      +......++..++.+..++..+.+..|..|. .|+++.|
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g  449 (505)
T TIGR00898       411 FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVG  449 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHh
Confidence            3333444445555555667778888999985 5887766

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=9e-28  Score=231.47  Aligned_cols=323  Identities=18%  Similarity=0.127  Sum_probs=232.3

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchh-----HHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 012519          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSF-----SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (461)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  177 (461)
                      .++++.++.........+.+|.+.+++|.+..+     .|++.+++.++..++.++.|+++||+|||++++.+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            445556666777778888999999999988654     488999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 012519          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (461)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~  257 (461)
                      .+++++.  ++++.+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|..++|.+++.+.+..+||+.
T Consensus        98 ~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  174 (408)
T PRK09874         98 MVLMGLA--QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV  174 (408)
T ss_pred             HHHHHHH--hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            9988888  999999999999999865 5677888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHH-HHHHHH
Q 012519          258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII-VANAMH  336 (461)
Q Consensus       258 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  336 (461)
                      |++.+++.++..+..++..+|+++..++.+..                       ...+..+.+++++++... ...++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~  231 (408)
T PRK09874        175 FFITASVLFLCFLVTLFCIRENFQPVSKKEML-----------------------HMREVVTSLKNPKLVLSLFVTTLII  231 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccccchhhh-----------------------HHHHHHHhCcCCchHHHHHHHHHHH
Confidence            99999888777766666666543221110000                       001223456677665433 333444


Q ss_pred             HHHHHHHHHhHHHHHHHhhCCCcc---ccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHH
Q 012519          337 SWGFFVILSWMPIYFNFVYHIDLR---QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (461)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (461)
                      .........+++.|..+..+....   ..+.+..+.+++.+++.+..|++.||+++|+         .+..+....++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~  302 (408)
T PRK09874        232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK---------ILITALIFSVLLL  302 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch---------hHHHHHHHHHHHH
Confidence            444555667788888875332221   2345556667778888999999999999882         2223333333333


Q ss_pred             HHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      +.....++.+...+..++.+.+.+...+.......+..| +++|++.|
T Consensus       303 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  350 (408)
T PRK09874        303 IPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFS  350 (408)
T ss_pred             HHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeeh
Confidence            333333444444444444455555555666666666665 56787765

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=2.3e-28  Score=230.57  Aligned_cols=301  Identities=30%  Similarity=0.457  Sum_probs=259.7

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh
Q 012519          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (461)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  182 (461)
                      .+.+..+....+.....+..|.+.++++.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++..++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            44566777778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 012519          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (461)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~  262 (461)
                      +.  ++++.++++|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+..+||+.|++.+
T Consensus        83 ~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          83 FA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             Hh--ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99  9999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHH
Q 012519          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (461)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (461)
                      ++.++..+...+..                                               |.++...+..++.......
T Consensus       161 ~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~  193 (352)
T cd06174         161 ILGLLLALLLLFLL-----------------------------------------------RLLLLLALAFFLLSFGYYG  193 (352)
T ss_pred             HHHHHHHHHHHHHH-----------------------------------------------HHHHHHHHHHHHHHhHHHH
Confidence            88777666555431                                               5577788888888888999


Q ss_pred             HHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChh
Q 012519          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (461)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (461)
                      ...+.|.+.++.+|.+..+.+.......++..++.++.+++.||+++|       ++ .+..+.....++.+.....++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~i~~~~~~~~~~~  265 (352)
T cd06174         194 LLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-------RL-LLLIGLLLAALGLLLLALAPSL  265 (352)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hH-HHHHHHHHHHHHHHHHHHhccH
Confidence            999999999997799999999999999999999999999999999988       21 3444555555555555555555


Q ss_pred             HHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      +......++...+.+...+.......+..| +++|+.+|
T Consensus       266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (352)
T cd06174         266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASG  304 (352)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHH
Confidence            555556666667777777888888888888 56887665

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=1.2e-28  Score=232.77  Aligned_cols=244  Identities=16%  Similarity=0.196  Sum_probs=201.8

Q ss_pred             hhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q 012519          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (461)
Q Consensus       116 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~  195 (461)
                      ..+++.+|.+.+++|.+.++.+++.+++.++..++.++.|+++||+|||+++.++.++..++.+.+ ..  ++++.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHHH
Confidence            466789999999999999999999999999999999999999999999999999999988888877 67  899999999


Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHHH
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWL  273 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~  273 (461)
                      |++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+++.+.++.  +||+.|.+.+++.++..+.. 
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~-  171 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAW-  171 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Confidence            999999999888888889999996 68999999999999999999999999888765  39999988776544433222 


Q ss_pred             HhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012519          274 SATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF  353 (461)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (461)
                        .++.+++.++                    +   ++......++++|+|.++...+..++....++....|+|.|+++
T Consensus       172 --~~~~~~~~~~--------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~  226 (355)
T TIGR00896       172 --IPQVRRRVAA--------------------N---QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS  226 (355)
T ss_pred             --hhhhccccCC--------------------C---CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2222211100                    0   00001123467888988887777777778888888999999987


Q ss_pred             hhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          354 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       354 ~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                       .|++..+.+.+.+...++.++++++.|++.||+++|
T Consensus       227 -~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~  262 (355)
T TIGR00896       227 -HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ  262 (355)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence             599999999999999999999999999999999655

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=5.5e-28  Score=230.14  Aligned_cols=318  Identities=13%  Similarity=0.039  Sum_probs=243.4

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHH----HHHHHHHHHHHH
Q 012519          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM----AWGVALWSLATF  179 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~~i~~~  179 (461)
                      +.+.++..+.......|.+|.+.+++|.+..++|++.+++.+...++++++|+++||+||++..    .++..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            4566666667777888999999999999999999999999999999999999999999985433    233222222  2


Q ss_pred             HhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 012519          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (461)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~  259 (461)
                      .+..+  ++++.+++.|+++|.+.+...|...++..++  +++|+++.|......++|.+++|++++.+.+++|||..|+
T Consensus        87 ~~~~~--~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~  162 (382)
T TIGR00902        87 FSAGA--HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA  162 (382)
T ss_pred             HHHhh--hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            34466  8999999999999999888889988887765  4789999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHH
Q 012519          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (461)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (461)
                      +.+...++ .+..+...|+.+++.+. +                    +++.....++++++|+|+++...+..++....
T Consensus       163 ~~~~~~~~-~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~  220 (382)
T TIGR00902       163 ILTAGLAF-MLIGFLIKPTIPPKDAI-P--------------------EDESQGDSAFIALLKNPMNLRFLAAVCLIQGA  220 (382)
T ss_pred             HHHHHHHH-HHHHHHcCCCCCCCccc-c--------------------ccccccchhHHHHHcChHHHHHHHHHHHHHHH
Confidence            87655333 22233333322221110 0                    00001123567899999999999999998899


Q ss_pred             HHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhcc
Q 012519          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (461)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (461)
                      ......+.|.|+++ .|.++.+.|.+..+..++.+++.++.+++.||++.|         .++.++.+..++........
T Consensus       221 ~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~---------~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       221 HAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR---------DLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             HHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH---------HHHHHHHHHHHHHHHHHHhH
Confidence            99999999999988 699999999999988888899999999999999887         34456666777666666666


Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccccccccc
Q 012519          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLH  459 (461)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~  459 (461)
                      ++.+..+...++-+...+...+....++++..++++++..
T Consensus       291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q  330 (382)
T TIGR00902       291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQPGSEIAKLQ  330 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhHHHHH
Confidence            6666666666666677777777777788877334565543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=6.7e-28  Score=231.17  Aligned_cols=320  Identities=17%  Similarity=0.113  Sum_probs=232.4

Q ss_pred             HHHHHHHhhhHhhhhhhhhhcC--CCchhHHHHHHH-----HHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh
Q 012519          109 ALCNADRVVMSVAIVPLSLAHG--WSRSFSGIVQSS-----FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (461)
Q Consensus       109 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  181 (461)
                      +.++++...++...+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||++++++.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888877754  455666665543     333445688999999999999999999999999999999


Q ss_pred             hccccccHH--------HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 012519          182 PWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM----  249 (461)
Q Consensus       182 ~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~----  249 (461)
                      +++  ++++        .++++|+++|++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+.    
T Consensus        83 ~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        83 GLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             hhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999  7765        48889999999999999999999999999999999999999999999999999887664    


Q ss_pred             ----hhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchh
Q 012519          250 ----SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP  325 (461)
Q Consensus       250 ----~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (461)
                          +..+||+.|++.+++.++..++ ....+|+++..++     .                .+++....+.++.+++++
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~----------------~~~~~~~~~~~~~~~~~~  218 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEKA-----Q----------------EKHKKKRGPIRETLTKHR  218 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHHH-----H----------------hccccccCCHHHHHHhch
Confidence                3568999999877666554333 2233443321100     0                000111234556676665


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHH
Q 012519          326 --TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (461)
Q Consensus       326 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (461)
                        ++...+..++.....+....++|.|+++.+|.+..+.+.......++..++.++.|++.||+++|       + .+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-------~-~~~~  290 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR-------P-VLII  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-------H-HHHH
Confidence              77777777777788888889999999887899999999999999999999999999999999988       2 2222


Q ss_pred             HhhHHHHHH--HHH-HhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          404 IGFIAPGIA--LIG-LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       404 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      .+.+.....  .+. ....++.+......++.....+...+.......|..|+ +|+++.|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~  351 (394)
T TIGR00883       291 FTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGAS  351 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEee
Confidence            222222211  111 11223333333444445555566667778888898885 5887765

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.97  E-value=1.2e-27  Score=226.18  Aligned_cols=313  Identities=13%  Similarity=0.092  Sum_probs=231.2

Q ss_pred             hhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh-----cchHH-HHHHHHHHHHHHHHhhccc-ccc
Q 012519          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKII-MAWGVALWSLATFLTPWAA-DTS  188 (461)
Q Consensus       116 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~~-~~~  188 (461)
                      ...++..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++.. ..+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456778899999999999999999766 555555 99999999998     89986 5667777777766666652 135


Q ss_pred             HHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------chhHHHH
Q 012519          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--------IFGPFVI  260 (461)
Q Consensus       189 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g--------wr~~f~~  260 (461)
                      ++.+....++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.++.+        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            66777788888999898999999999999999999999999999999999999999999998888        9999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchh---hHHHHHHHHHHH
Q 012519          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP---TWSIIVANAMHS  337 (461)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  337 (461)
                      .++..++..+..++..||+.++.+. ++++.                   ++...++++++++|.   ++...+..++..
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASV-PKPLT-------------------QAVLKPIREFFQRKNMIQALLLLLLIVLYK  222 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCccccc-chhHH-------------------HHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            9988777665555555654322111 00000                   001134567777775   777777777778


Q ss_pred             HHHHHHHHhHHHHHHHhhCCCccccchhhhhhH-HHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHH
Q 012519          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW-SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (461)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (461)
                      ..++....+.|.|+++ +|+++.+.+.+....+ +..+++.+++|++.||+++|       +...  .+.++.++.....
T Consensus       223 ~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-------~~l~--~~~~~~~~~~~~~  292 (356)
T TIGR00901       223 LGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-------YALL--LFGIVQALTNAGF  292 (356)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-------HHHH--HHHHHHHHHHHHH
Confidence            8888889999999998 7999999888877666 56788999999999999987       2222  2223333322222


Q ss_pred             hcc-----------ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          417 TAA-----------KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       417 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      ...           ++.+......++..+..+...+...++..+..| +++|+..|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g  348 (356)
T TIGR00901       293 VWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMA  348 (356)
T ss_pred             HHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence            111           223333444445566677788888899998887 56888765

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=1.4e-27  Score=228.24  Aligned_cols=315  Identities=15%  Similarity=0.093  Sum_probs=212.4

Q ss_pred             HHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHH-HHHHhHhhhhhhhhhhcchHHH-HHHHHHHHHHHHHhhc
Q 012519          107 ALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIM-AWGVALWSLATFLTPW  183 (461)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~  183 (461)
                      ..++.........+.++. +.+++|.+.+++|++.+...+ +..++.++.++ .||+||||.+ +.+.++.+++.++.++
T Consensus        23 ~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~  101 (393)
T PRK15011         23 VAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW  101 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            344555555555565555 678999999999999876655 55555655555 9999999875 5566666677778888


Q ss_pred             cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTER--ARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (461)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  261 (461)
                      +  ++++.+++.+.+.|...+...+...+++.|+.++++|  +...++.+.+.++|.++||++++.+.+++|||..|++.
T Consensus       102 ~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~  179 (393)
T PRK15011        102 N--RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSA  179 (393)
T ss_pred             h--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHH
Confidence            8  8999887665555544556788888999998876555  34568889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcc-hhhHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK-MPTWSIIVANAMHSWGF  340 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  340 (461)
                      ++..++..+..++..||.+++++... +                ..       ..   ..++ +..+......++.....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~-------~~---~~~~~~~~~~~~~~~~~~~~~~  232 (393)
T PRK15011        180 AVAFIVCGVMVWLFLPSMRKELPLAT-G----------------TL-------EA---PRRNRRDTLLLFVICTLMWGTN  232 (393)
T ss_pred             HHHHHHHHHHHHhhcCccCCCCcccc-c----------------cc-------cc---cccccccHHHHHHHHHHHHHHH
Confidence            98888777776766676653322100 0                00       00   0011 22233333344444555


Q ss_pred             HHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccC
Q 012519          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (461)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (461)
                      ..+..+.|.|+++.+|+++.+.+.+.....++.+++.++.|+++||+++|       + .+ ..+.....+........+
T Consensus       233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-------~-~~-~~~~~~~~~~~~~~~~~~  303 (393)
T PRK15011        233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-------F-LM-RVAAVAGVCFYAGMLMAH  303 (393)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------H-HH-HHHHHHHHHHHHHHHHHh
Confidence            56677899999888899998888888877788888999999999999988       2 22 222222222222222233


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      +.+..+...++.....+...+....+.+|..|+++|+++|
T Consensus       304 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~  343 (393)
T PRK15011        304 SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATT  343 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHH
Confidence            3333333334444444554555566778888988887654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.96  E-value=3e-27  Score=225.23  Aligned_cols=314  Identities=12%  Similarity=0.022  Sum_probs=231.8

Q ss_pred             HHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcch----HHHHHHHHHHHHHHHHhhc
Q 012519          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK----IIMAWGVALWSLATFLTPW  183 (461)
Q Consensus       108 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~~~  183 (461)
                      ++........+.+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            444445556888889999999999999999999999999999999999999999984    3333332222  2233344


Q ss_pred             cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 012519          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (461)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  263 (461)
                      .  +++|.+++.|++.|++.+...+...+++.++  +++|+++.+......++|..+||++++++.+++|||..|++.++
T Consensus        91 ~--~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         91 A--HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             c--ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            5  8899999999999999998999888888877  46788999999999999999999999999999999999998776


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 012519          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (461)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (461)
                      ..++..+. .+..||++++.++                     +++.++...++++++|+|+++...+..++........
T Consensus       167 ~~~~~~~~-~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~  224 (382)
T PRK11128        167 GVASMLLG-QLLRPTIMPQGES---------------------RQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAY  224 (382)
T ss_pred             HHHHHHHH-HHccCCCCCcccc---------------------ccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhH
Confidence            55544333 3333332111100                     0000111246789999999999888888887777788


Q ss_pred             HHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhH
Q 012519          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (461)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (461)
                      ..+.|.|+++ .|++..+.|.+.+...++.++..++.+++.||++++         ..+..+.+..++..+.....++.+
T Consensus       225 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~  294 (382)
T PRK11128        225 YGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR---------DLLLLSAICGVVRWGLMGSTTALP  294 (382)
T ss_pred             HHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHhhhhHH
Confidence            8889999977 699998899998888888899999999999999887         233445555555555555556655


Q ss_pred             HHHHHHHHHHHHHhhhhhchhHhhhhhccccccccc
Q 012519          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLH  459 (461)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~  459 (461)
                      ..+...++.+...+...+....+..+..+++++++.
T Consensus       295 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (382)
T PRK11128        295 WLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQ  330 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHH
Confidence            555555555555666666666666666555555543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.2e-27  Score=230.72  Aligned_cols=347  Identities=20%  Similarity=0.162  Sum_probs=280.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  173 (461)
                      ..+.|.+++..++...........++...+.++++++.+.++++|+.++......+..++.+.+.||||.|.+.++|.++
T Consensus        41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v  120 (509)
T KOG2504|consen   41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV  120 (509)
T ss_pred             CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence            45668888888888888877788888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccHHHHHHH-HHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012519          174 WSLATFLTPWAADTSLLALLAM-RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (461)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~  252 (461)
                      .+++.++.+++  +++|++++. -++.|+|.|+.+.....++..|| +++|+.+.|+..++.++|.++-|.+..++.+.+
T Consensus       121 ~~~g~~lssF~--~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~  197 (509)
T KOG2504|consen  121 AALGLLLSSFA--TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY  197 (509)
T ss_pred             HHHHHHHHHHH--hhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence            99999999999  999998775 68999999999999999999998 589999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHH------------Hh--hcCccc----------cCCCC
Q 012519          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL------------RE--KQKPLL----------MGNKH  308 (461)
Q Consensus       253 gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--~~~~~~----------~~~~~  308 (461)
                      |||+.+++.+.+.+..++......|..++..+. .+++.+...            ..  ......          .+..+
T Consensus       198 G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (509)
T KOG2504|consen  198 GWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD  276 (509)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence            999999999999988777777777744443222 000000000            00  000000          00000


Q ss_pred             CCC--CCChhH----HHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHH
Q 012519          309 KPA--TVIPPF----RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGL  382 (461)
Q Consensus       309 ~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~  382 (461)
                      +..  ......    .+++++|.++.+.+...+...+++....++|.|..+ .|++..+++.++++.++..++++++.|+
T Consensus       277 ~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~  355 (509)
T KOG2504|consen  277 KWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGL  355 (509)
T ss_pred             cccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhh
Confidence            000  111111    488999999999999999999999999999999996 6999999999999999999999999999


Q ss_pred             hhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc
Q 012519          383 LSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP  452 (461)
Q Consensus       383 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  452 (461)
                      +.|+...+       ++.+..++++..++..+.....++.+..+.+.++.+...+.........+.++.+
T Consensus       356 laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g  418 (509)
T KOG2504|consen  356 LADKPGIR-------ALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVG  418 (509)
T ss_pred             hcCccccc-------hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99998865       4577778888888888777777777777777777777777776666666666664

>PRK10054 putative transporter; Provisional

Probab=99.96  E-value=2.6e-27  Score=226.01  Aligned_cols=319  Identities=14%  Similarity=0.088  Sum_probs=231.0

Q ss_pred             HHHHHHHHHHhhhHhhhh-hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcc
Q 012519          106 LALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (461)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  184 (461)
                      ...++.........+.++ .+.+++|.+..++|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.+++
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            344444555555555554 5667899999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 012519          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (461)
Q Consensus       185 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~  264 (461)
                        ++++.++++|++.|.+.+...+...++..|.+|+++|++++++.....++|..+||++++.+.+ .+|+..|++.+++
T Consensus        94 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~  170 (395)
T PRK10054         94 --NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC  170 (395)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence              9999999999999988888888899999999999999999999999999999999999998875 7999999998888


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHH
Q 012519          265 GFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (461)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (461)
                      .++..++..+..|+.++++++  +++                      ...+.++.+|+|+++...+..++..+......
T Consensus       171 ~~i~~i~~~~~~~~~~~~~~~--~~~----------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  226 (395)
T PRK10054        171 SAFPLVFIQIWVQRSEKAIAT--ETG----------------------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFA  226 (395)
T ss_pred             HHHHHHHHHHHHhcccccccc--chh----------------------hhhhhhhhccCceehHHHHHHHHHHHHHHHhh
Confidence            777655555544443221110  000                      00122577889999888888887777776666


Q ss_pred             HhHHHHHHHhh--CCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhcc-Ch
Q 012519          345 SWMPIYFNFVY--HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-KS  421 (461)
Q Consensus       345 ~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  421 (461)
                      .+.+.|+....  +.+....+.+.....+..+......|++.||.++|         ..+..++...++....+... ++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~  297 (395)
T PRK10054        227 SCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR---------PLMTAGTLCFVIGLVGFIFSGNS  297 (395)
T ss_pred             hhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch---------hHHHHHHHHHHHHHHHHHHcchH
Confidence            77777775532  44445566666666666666677888899988777         23333444444444333332 33


Q ss_pred             hHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      .+...+...+...+.+...+.....+.+..|+ .+|+..|
T Consensus       298 ~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~  337 (395)
T PRK10054        298 LLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFS  337 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHh
Confidence            33333333444444445455666777777774 5776543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=2.1e-26  Score=225.26  Aligned_cols=327  Identities=16%  Similarity=0.148  Sum_probs=231.5

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh-----cchHH-HHHHHHHHH
Q 012519          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKII-MAWGVALWS  175 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~  175 (461)
                      ..+.+.++..+.........+|...++.|.+..+++.+ +.....+ ++.+++|+++||+     ||||. ++++.++.+
T Consensus        15 ~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         15 AILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            34455555666666688888999999999999999997 4444444 5899999999999     99985 667777777


Q ss_pred             HHHHHhhccc-cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcC
Q 012519          176 LATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAG  253 (461)
Q Consensus       176 i~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~g  253 (461)
                      ++..+.++.. .++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ..|
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G  172 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG  172 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            7777766652 25788999999999999999999999999999999999999999999999999999999999998 579


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHH
Q 012519          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (461)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (461)
                      ||..|++.+++.++..+..++ .||+++..+. + ++                  .++....+++++++++..|...+..
T Consensus       173 Wr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~-~-~~------------------~~~~~~~~l~~~~~~~~~~~~ll~~  231 (491)
T PRK11010        173 WQGMYWLMAALLIPCIIATLL-APEPTDTIPV-P-KT------------------LEQAVVAPLRDFFGRNNAWLILLLI  231 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCCCcccccc-c-cc------------------hhhhHHHHHHHHHcCcCHHHHHHHH
Confidence            999999999887776555444 4654322110 0 00                  0001123567788888887777666


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhCCCccccchhhh-hhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhH--HHH
Q 012519          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA-VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI--APG  410 (461)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~--~~~  410 (461)
                      ++..........+.+.|+.+..|++..+.+.... ...++.+++.+++|+++||+++|       + .+...+.+  ...
T Consensus       232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-------~-~l~i~~~l~~l~~  303 (491)
T PRK11010        232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF-------R-ALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------H-HHHHHHHHHHHHH
Confidence            7766676677778888887778999999999874 55578899999999999999987       2 22222211  111


Q ss_pred             HHHHHHhcc-ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-cccccc
Q 012519          411 IALIGLTAA-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLH  459 (461)
Q Consensus       411 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~  459 (461)
                      +........ ++........++.....++..+...+...+..++ ..++..
T Consensus       304 l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~  354 (491)
T PRK11010        304 AGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQF  354 (491)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence            111112222 2322222233333334455555566777777764 355443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.96  E-value=4.2e-26  Score=211.31  Aligned_cols=337  Identities=11%  Similarity=0.053  Sum_probs=242.8

Q ss_pred             HHhhhHhhhhhhhhhcCCCchh-HHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHH
Q 012519          114 DRVVMSVAIVPLSLAHGWSRSF-SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (461)
Q Consensus       114 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l  192 (461)
                      .+...+.+.|.+.+++|+|..| .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++..++.+++  ++++.+
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L  118 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHM  118 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            4667888899999999999999 9999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH--HHHHHHHHH
Q 012519          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF--GLSGFLWVL  270 (461)
Q Consensus       193 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~--~~~~~~~~~  270 (461)
                      .+.|++.|++.|... +...++..|+|+++|+++.++..++..+|.++++++++. ...+|||+-+.+.  ...+....+
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~  196 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSV  196 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHH
Confidence            999999999999999 999999999999999999999999999999999999999 5578999866543  223333344


Q ss_pred             HHHHhcCCCCCCCCCcchhHHH-HHHHh--hcCcccc-CCCC-CC-------CCCChhHHHHhcchhhHHHHHHHHHHHH
Q 012519          271 VWLSATSSTPDRHPQISKYELE-YILRE--KQKPLLM-GNKH-KP-------ATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (461)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~-~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (461)
                      ++-+++|..++..-..++++.+ ....+  ....... ...+ .+       ...+..++...+||.++.-.+-+.+...
T Consensus       197 ~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~  276 (511)
T TIGR00806       197 FLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSA  276 (511)
T ss_pred             HHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhh
Confidence            4445556433321100000000 00000  0000000 0000 00       1123355667888988888888888888


Q ss_pred             HHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhc
Q 012519          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (461)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (461)
                      +++.+.+|......+..+-+....|.+-++..+.+.+..+..|++-.++.+.       ....+.+..++.+..++++..
T Consensus       277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~~  349 (511)
T TIGR00806       277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMSQ  349 (511)
T ss_pred             HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhhc
Confidence            8888888887777665332223567777777788888889999885554332       234455555566666777778


Q ss_pred             cChhHHHHHHHHHHHHHHhhhhhchhHhhhhhc-ccccccccCC
Q 012519          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGI  461 (461)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~gl  461 (461)
                      .++.+...+..+++...+.+..+....-+.... .+.-|.+.|+
T Consensus       350 t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGi  393 (511)
T TIGR00806       350 SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGI  393 (511)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEec
Confidence            888888887777777777777665554444333 3445666653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=8.3e-26  Score=202.19  Aligned_cols=327  Identities=17%  Similarity=0.131  Sum_probs=261.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  178 (461)
                      ..+..++...++.++......+.+|.+++.|+++..|++++...+..++.+.+++.|++.+|+|+|+.++.|+.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            45666777778888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcc-ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Q 012519          179 FLTPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ------  251 (461)
Q Consensus       179 ~~~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------  251 (461)
                      .+..-+ ...+|..++++-++.|.|.+...+.++.+++...++++-.+-+++.+...++|.++||++++.++.+      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            987422 2278999999999999999999999999999999998899999999999999999999999998762      


Q ss_pred             -------------cCchhHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhH
Q 012519          252 -------------AGIFGPFVIFGLSGFLWVLVWLSAT-SSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF  317 (461)
Q Consensus       252 -------------~gwr~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (461)
                                   -.|+++|...+...++..+...... |+.++..+                       +..+......
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~-----------------------~~~~~~~~~~  229 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAP-----------------------SLGASGSAGL  229 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccc-----------------------cccccccchH
Confidence                         2488888888877766655544432 22221111                       0111111145


Q ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhh
Q 012519          318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLT  397 (461)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~  397 (461)
                      .+++++|.++...+..|++.....+...|++.|+.+..|.+..+++...+..+.+.++|++++.++..|+...       
T Consensus       230 ~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~-------  302 (422)
T COG0738         230 SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE-------  302 (422)
T ss_pred             HHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-------
Confidence            6899999999999999999999999999999999997799999999999999999999999999999998776       


Q ss_pred             HHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccc
Q 012519          398 RKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVL  458 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~  458 (461)
                       |.+...+.+...++.. ....++ .+.+....+.+.+.+..+|..++...+..|++...+
T Consensus       303 -k~Laf~a~~~ill~~~-~~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~  360 (422)
T COG0738         303 -KYLAFYALIAILLLLA-VALIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVG  360 (422)
T ss_pred             -HHHHHHHHHHHHHHHH-HHHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccccc
Confidence             3444444333333332 333333 334445556667777777888888887777654443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.96  E-value=3.6e-26  Score=220.48  Aligned_cols=350  Identities=18%  Similarity=0.137  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 012519           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (461)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  177 (461)
                      ...+..+++.....++.....+..++.+.+|+| +.....|+.+.+.++.++..++.|+++|.||||.+++.+.++..+|
T Consensus        43 i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG  121 (599)
T PF06609_consen   43 IASFAAFSLAVIAAYFVLVLPASILPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVG  121 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhH
Confidence            333444555555555555666778899999999 4578899999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 012519          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (461)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~  257 (461)
                      .++++.+  +|...++++..+.|+|.|... .....++|..|.|.|+...++......+...+++.++..+..+.+|||.
T Consensus       122 ~Iv~atA--~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~  198 (599)
T PF06609_consen  122 SIVCATA--QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI  198 (599)
T ss_pred             HHHhhcC--CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence            9999999  999999999999999987655 4566689999999999888888777767677888888887777799999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCC--C-Ccch-hHHHHH------------------HHhhcC---cccc--------
Q 012519          258 FVIFGLSGFLWVLVWLSATSSTPDRH--P-QISK-YELEYI------------------LREKQK---PLLM--------  304 (461)
Q Consensus       258 f~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~------------------~~~~~~---~~~~--------  304 (461)
                      |++.+++..+.+++.+++..++++.+  . +... ++..+.                  ......   ++..        
T Consensus       199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv  278 (599)
T PF06609_consen  199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV  278 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence            99998887776655444443333221  1 1111 111111                  000000   0000        


Q ss_pred             -----------CCC-CCCCCCChhHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCcc---ccchhhhh
Q 012519          305 -----------GNK-HKPATVIPPFRRLLSK-MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLR---QASWFSAV  368 (461)
Q Consensus       305 -----------~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~  368 (461)
                                 .+. ...+.+..|. +++|+ |.+...++..++....++....+.|+.....++-++.   ..++....
T Consensus       279 iG~~~Lv~F~~wE~~~~~~~Pl~P~-~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~  357 (599)
T PF06609_consen  279 IGFVLLVAFVVWEWFGAPKDPLFPH-RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSP  357 (599)
T ss_pred             HHHHHHHHHHHhhhhccCCCCcCCH-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhh
Confidence                       011 1122334444 67787 5566667788888888889889999998888877663   56788888


Q ss_pred             hHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHH--HHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHh
Q 012519          369 PWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI--ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVN  446 (461)
Q Consensus       369 ~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (461)
                      .+++..++.++.|.+..++++-        |+.+.++.+.+..  +.+.....++....+.+.++.+.+.+.........
T Consensus       358 ~~fg~~~g~~i~g~l~~~ir~~--------Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  358 VGFGSCAGAVILGLLFSKIRHI--------KWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHccch--------hHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            8888899999999999888754        3444444433332  33333333444444455555555555554444555


Q ss_pred             hhhhcc-cccccccC
Q 012519          447 LQEIAP-QYSGVLHG  460 (461)
Q Consensus       447 ~~~~~p-~~~g~~~g  460 (461)
                      .+-..| ++.|++.|
T Consensus       430 ~ql~~p~~~ig~a~g  444 (599)
T PF06609_consen  430 AQLIVPDEDIGTATG  444 (599)
T ss_pred             eEeeeCchHHHHHHH
Confidence            555555 45776655

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.95  E-value=3.3e-26  Score=247.41  Aligned_cols=330  Identities=15%  Similarity=0.061  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHHHHhhhHhhh-hhhhhhcCCCc-hhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHH---HHHHHHH
Q 012519          102 SMLALALALCNADRVVMSVAI-VPLSLAHGWSR-SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW---GVALWSL  176 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~i  176 (461)
                      ...++..+.+.+....+.... ..+..+.+.+. ...++..+++.++++++++++|+++||+|||+++..   +.++..+
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~   97 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA   97 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence            333444444444443433332 34444444433 457888999999999999999999999999997633   2223333


Q ss_pred             HHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 012519          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~  256 (461)
                      ..+.+...  +++++++++|+++|++.+...|+..+++.+++|+++|++++++.+++.++|.++||++++++....+|++
T Consensus        98 ~~~~~~~~--~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~  175 (1140)
T PRK06814         98 LAIYGFHL--NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVI  175 (1140)
T ss_pred             HHHHHHHH--hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            33334445  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHH
Q 012519          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (461)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (461)
                      .|+..++..++..++. +..++.++.......+..                 ..+.....++.+.++|.++...+..++.
T Consensus       176 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (1140)
T PRK06814        176 LVALLMGIAVLGWLAS-LFIPKTGNAAPDLKIDRN-----------------IIRSTITLLKYAKADKRIWLAILGISWF  237 (1140)
T ss_pred             HHHHHHHHHHHHHHHH-hhCCCCCCCCCCCeeccc-----------------hHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            9955555444444433 344444322111100000                 0000123567888999999999988888


Q ss_pred             HHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHH
Q 012519          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (461)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (461)
                      ++....+..++|.|+++.+|.++...+++.+...++.+++.++.|++.++..+++.       ..  .+.++.+++.+.+
T Consensus       238 ~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~-------~~--~~~~~~~~~~~~l  308 (1140)
T PRK06814        238 WLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLY-------VP--IGALLMGLFGLDL  308 (1140)
T ss_pred             HHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee-------eh--HHHHHHHHHHHHH
Confidence            88888888999999999899999999999999999999999999999987665521       11  1111111111111


Q ss_pred             hc--------------------cChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          417 TA--------------------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       417 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      ..                    ..+.+..++..++.+.+.++..+...+..++..| +++|+++|
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g  373 (1140)
T PRK06814        309 AFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIA  373 (1140)
T ss_pred             HhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeH
Confidence            11                    1333434444444555556666667788888877 46998876

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=3.1e-26  Score=248.56  Aligned_cols=319  Identities=18%  Similarity=0.140  Sum_probs=230.7

Q ss_pred             hhhHhhhhhhhhhcCCCc--hhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH---hhccccccHH
Q 012519          116 VVMSVAIVPLSLAHGWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL---TPWAADTSLL  190 (461)
Q Consensus       116 ~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~~  190 (461)
                      .....+.+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++   +...  ++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~  104 (1146)
T PRK08633         27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--GWFW  104 (1146)
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--ccHH
Confidence            344455556666666554  44799999999999999999999999999999999988776655544   3345  7899


Q ss_pred             HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--------c-CchhHHHHH
Q 012519          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------A-GIFGPFVIF  261 (461)
Q Consensus       191 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~-gwr~~f~~~  261 (461)
                      .++++|+++|++.+...++..+++.|++|+++|++++++...+..+|.++|+++++++.+.        + +|++.+.+.
T Consensus       105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (1146)
T PRK08633        105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV  184 (1146)
T ss_pred             HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999876        2 345555444


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (461)
                      ++...+..++..+..|+.++......+.+               .....+.....++.+++++.++...+..++..+...
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  249 (1146)
T PRK08633        185 LLAVAVLGLIFAYRLPKVPAAAPEVFDKK---------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQ  249 (1146)
T ss_pred             HHHHHHHHHHHHhcCcCCCCCCccccccc---------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            44443333344444555543322110000               000001112356678888988888887777777777


Q ss_pred             HHHHhHHHHHHHhhCCCcc-ccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccC
Q 012519          342 VILSWMPIYFNFVYHIDLR-QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (461)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (461)
                      ....++|.|+++.+|++.. ..+++.+...++.+++.++.+++.||+++++         ++.++.++.+++++++....
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~---------~~~~~~~~~~~~~~~~~~~~  320 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG---------LVPLGALGLALSLFLLPTAP  320 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc---------chhHHHHHHHHHHHHHHHhh
Confidence            8888999999998999988 8899999999999999999999999988762         22233344444444444444


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      +.+..++..++.+++.++..+...+++.+..| +++|+++|
T Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~  361 (1146)
T PRK08633        321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLA  361 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhH
Confidence            44444444455555556666667777777776 56888765

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=1.9e-25  Score=195.77  Aligned_cols=354  Identities=16%  Similarity=0.098  Sum_probs=263.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      ..+.+|........+...+.+.......+.|.+.+..+.+..|..++......+..+++..+|.++|++|||+.+.+..+
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            45677888888888998888888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012519          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (461)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~  252 (461)
                      ..++..++.+.+  +|+..+++.|.+.|+|.|+ .|...++-.|..|..+|+..+-.. ..+.+|.+....++..++.++
T Consensus       152 ~t~v~~~is~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  152 VTGVFGVISGAS--PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHHHHHhhcCC--CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999  9999999999999999998 899999999999999998887777 999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CcchhH----HHHHHHhhcCcccc--------------------CCC
Q 012519          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYE----LEYILREKQKPLLM--------------------GNK  307 (461)
Q Consensus       253 gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~--------------------~~~  307 (461)
                      ||||.......+..+.+.+ .+..+|+|+..- +.++.+    .+++.+..++....                    .+.
T Consensus       228 gwr~~l~~~~~pl~~~a~f-~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~  306 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMFAARF-LVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS  306 (528)
T ss_pred             hHHHHHHHHHhHHHHHHHH-HhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence            9999988888665555544 444578776431 112221    22222222221000                    000


Q ss_pred             CCCCCCChhHHHHhcc---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhh--CC-----------------Cccccchh
Q 012519          308 HKPATVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVILSWMPIYFNFVY--HI-----------------DLRQASWF  365 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~-----------------s~~~~~~~  365 (461)
                      ...+....+...++..   ++.+..+..+|...+.+++.........+...  +.                 +...--.=
T Consensus       307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd  386 (528)
T KOG0253|consen  307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD  386 (528)
T ss_pred             ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence            1112233334444422   34445566666667777776555555544321  00                 00110111


Q ss_pred             hhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhH
Q 012519          366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV  445 (461)
Q Consensus       366 ~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (461)
                      ..+..+....|.++.+++.||+|||         ..+...++..+++++.+...........+.+.+-.+....+...+.
T Consensus       387 llitslaefPGlLIt~~iverlGRK---------kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYv  457 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRK---------KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYV  457 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcch---------hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEE
Confidence            2344567889999999999999988         3556677777787777777766666777778888888888889999


Q ss_pred             hhhhhccc-ccccccC
Q 012519          446 NLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       446 ~~~~~~p~-~~g~~~g  460 (461)
                      +..|++|. .|+++.|
T Consensus       458 YtPEVyPTavRatgvG  473 (528)
T KOG0253|consen  458 YTPEVYPTAVRATGVG  473 (528)
T ss_pred             ecCcccchhhhhcchh
Confidence            99999996 4877766

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=6e-26  Score=223.78  Aligned_cols=348  Identities=19%  Similarity=0.112  Sum_probs=233.9

Q ss_pred             HHHHHHHHHHHHHHHHH--HhhhHhhhhhhhhhc-----CCCc--hhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHH
Q 012519           98 VKVVSMLALALALCNAD--RVVMSVAIVPLSLAH-----GWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA  168 (461)
Q Consensus        98 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~-----~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~  168 (461)
                      ........+..+..+++  ......+...+.++.     ..+.  .+.+|+.+.+.++.+++++++|+++|++|||+.++
T Consensus        44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~  123 (513)
T KOG0254|consen   44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL  123 (513)
T ss_pred             HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33444445555555554  344555555555532     1122  35599999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          169 WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      ++.+++.++.++++++  +|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++...
T Consensus       124 ~~~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  124 LAVVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999  99999999999999999999999999999999999999999999999999999995555444


Q ss_pred             Hhh-cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-cchhHHHHHHHhhcC--ccccCC-----------CCCCCCC
Q 012519          249 MSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQK--PLLMGN-----------KHKPATV  313 (461)
Q Consensus       249 ~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~-----------~~~~~~~  313 (461)
                      .+. .+||..+.+..+++++..+. .++.||+|+..-+ .+.++.+........  ....+.           .......
T Consensus       202 ~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (513)
T KOG0254|consen  202 SKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG  280 (513)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence            332 48999999999999888888 7778888865422 222333322222111  000000           0000000


Q ss_pred             ChhHHHHhc----chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhh
Q 012519          314 IPPFRRLLS----KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (461)
Q Consensus       314 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~  389 (461)
                      ...++++++    ++.++.+.+..+.+..+......|.+.+++.. |.+... .....+.++..+++.+++.++.||+||
T Consensus       281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gR  358 (513)
T KOG0254|consen  281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGR  358 (513)
T ss_pred             cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc-CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            012233332    23344555555666666677778888888875 766443 556667777888888999999999998


Q ss_pred             cCcchhhhHHHHHHHhhHHHHHHHHHHhcc------------ChhHHHHHHHHHHHHHHhhh-hhchhHhhhhhccc-cc
Q 012519          390 RGTSVTLTRKILQSIGFIAPGIALIGLTAA------------KSPVMASAWLTLAIGMKSFS-HSGFLVNLQEIAPQ-YS  455 (461)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~-~~  455 (461)
                      |         .++..+...+.++.+++...            ...+..+...++....+... .+..+.+..|++|. .|
T Consensus       359 r---------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r  429 (513)
T KOG0254|consen  359 R---------KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLR  429 (513)
T ss_pred             H---------HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHH
Confidence            8         34444444444444433211            11223333333333333333 34666788999984 46


Q ss_pred             cccc
Q 012519          456 GVLH  459 (461)
Q Consensus       456 g~~~  459 (461)
                      +.+.
T Consensus       430 ~~~~  433 (513)
T KOG0254|consen  430 SKGA  433 (513)
T ss_pred             hhhH
Confidence            6554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.95  E-value=2e-25  Score=216.53  Aligned_cols=331  Identities=19%  Similarity=0.159  Sum_probs=258.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  180 (461)
                      +..++.+.+++.++..+....++-+..++.-|+...+++..+..+...+.++++|.++||++|||+++.+.++.++..++
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~   91 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL   91 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            34456677777777777888888888788889999999999999999999999999999999999999999887665444


Q ss_pred             hhc---cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 012519          181 TPW---AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (461)
Q Consensus       181 ~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~  257 (461)
                      .++   ....+.|.+++.-++.|++.+...|+..+++.|.+|+++...++++.+...++..++||.++|.+...+|-.+.
T Consensus        92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~  171 (524)
T PF05977_consen   92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAA  171 (524)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            332   22357899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHH
Q 012519          258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (461)
Q Consensus       258 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (461)
                      |.+.++..++..+......++.+++ + ..++.                  ..+.....++.+.++|.+...++..++.+
T Consensus       172 f~inalsfl~~i~~l~~~~~~~~~~-~-~~~e~------------------~~~~l~~G~ryv~~~~~l~~~l~~~~~~~  231 (524)
T PF05977_consen  172 FLINALSFLISILALLRWKPPPPPS-S-LPRER------------------FFSALREGLRYVRSSPPLRSVLLRSFLFN  231 (524)
T ss_pred             HHHHHHHHHHHHHHHHHcccccccc-c-cchhh------------------hhhhHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            9988876665544444433222111 1 11000                  01112235666677787777777666666


Q ss_pred             HHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHh
Q 012519          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (461)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (461)
                      +....+...+|.+.++.+|.++...|++.+..+++.++|.++.+++.+|++++         .++..+.+..+++++.+.
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~---------~lv~~~~~~~a~~~~~la  302 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR---------RLVLLASLLFALALLLLA  302 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc---------hhhHHHHHHHHHHHHHHh
Confidence            66667778899999999999999999999999999999999999998887766         234455666677777777


Q ss_pred             ccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          418 AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      ..++.+...+.+++.+.+.........+..++..|+ .+|++++
T Consensus       303 l~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~s  346 (524)
T PF05977_consen  303 LSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFS  346 (524)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHH
Confidence            777777766666676777677777777888888885 5988765

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.95  E-value=7.5e-25  Score=209.94  Aligned_cols=328  Identities=13%  Similarity=0.043  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhh-hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 012519          102 SMLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  180 (461)
                      +.+...+++.+.....+.+.+|.+ .+++|.+..+.|++.+++.++..+++++.|+++||+|||+.++.++...+++...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~   84 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAP   84 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            344555566666666777777654 5678999999999999999999999999999999999999998877766654432


Q ss_pred             h---hccc---cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          181 T---PWAA---DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       181 ~---~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      .   .+..   .+.++.+++.+++.|++.+...+....+..|..  ++++..++......++|..+||++++.+.+ .+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~  161 (396)
T TIGR00882        85 FFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDP  161 (396)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCc
Confidence            2   2220   012344567789999998888888888877754  344567788888899999999999998865 599


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHH
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (461)
                      |..|++.+++.++..++.+...+++|++++.  +++        .      +.++++....++++++|+|+++...+..+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~------~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  225 (396)
T TIGR00882       162 QIVFWLGSGFALILMLLLMFAKPKAPSSATV--ANA--------L------GANASAFSLKLALELFRQRKFWMFVLYVV  225 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCchhhhh--hcc--------c------ccccCCCCHHHHHHHHcCCcHHHHHHHHH
Confidence            9999999888887766665554444321100  000        0      00111222346788999999888777776


Q ss_pred             HHHHHHHHHHHhHHHHHHHhh---CCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHH
Q 012519          335 MHSWGFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (461)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (461)
                      +....+.....+.+.|+++.+   +.+....+...++..+...++.+..+++.||+++|+         ...++.++.++
T Consensus       226 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~---------~l~~~~~l~~l  296 (396)
T TIGR00882       226 GVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN---------ALLIAGTIMSV  296 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHH
Confidence            666666667778888888764   344556677888888888889999999999999882         23344444444


Q ss_pred             HHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-cccc
Q 012519          412 ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGV  457 (461)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~  457 (461)
                      ........++.+......++.+............+..+..|+ .+++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at  343 (396)
T TIGR00882       297 RIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSAT  343 (396)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence            444444444544443333333333322222333344444443 3444

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.3e-25  Score=211.27  Aligned_cols=354  Identities=18%  Similarity=0.112  Sum_probs=243.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhh--------hhcC--CCchh----HHHHHHHHHHHHHHhHhhhhhhhhh
Q 012519           95 SERVKVVSMLALALALCNADRVVMSVAIVPLS--------LAHG--WSRSF----SGIVQSSFLWGYLVSPIAGGTLVDY  160 (461)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~~~~~s~~~~~~~~~~~~~g~l~dr  160 (461)
                      ++.........++.+-.++....+++..+.+.        +.+|  .++++    .+.+.+++.+|.++|++..|+++||
T Consensus         7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~   86 (485)
T KOG0569|consen    7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR   86 (485)
T ss_pred             HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444555555666666666666665544433        3445  34433    4677789999999999999999999


Q ss_pred             hcchHHHHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHH
Q 012519          161 YGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA  239 (461)
Q Consensus       161 ~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  239 (461)
                      +|||..+.++.++..++.++..++ ..+++.+++++|++.|+..|........++.|..|++.||..-.+.+.+..+|.+
T Consensus        87 ~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l  166 (485)
T KOG0569|consen   87 FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGIL  166 (485)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHH
Confidence            999999999999888887775554 1278999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-H-HHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC--CcchhHHHHHHHhhcCc-----------ccc
Q 012519          240 IGLVLSP-I-LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP--QISKYELEYILREKQKP-----------LLM  304 (461)
Q Consensus       240 ~g~~~~~-~-l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~  304 (461)
                      ++..++. . +.+...|++.+.+..+++++..+. +.+.||+|+..-  +.+++++++..+.....           ...
T Consensus       167 l~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~  245 (485)
T KOG0569|consen  167 LGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI  245 (485)
T ss_pred             HHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            9976653 2 334456999999888887775554 445699997542  33444444333221111           001


Q ss_pred             CCCCCCCCCChhHHHHhcchhhHHH-----HHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHH
Q 012519          305 GNKHKPATVIPPFRRLLSKMPTWSI-----IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYL  379 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~  379 (461)
                      ++.+..+....+++++++++....-     .+.......+.+....|...++++. |++..++.+.....++..++..++
T Consensus       246 ~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a-G~~~~~a~~an~~~g~v~~~~t~~  324 (485)
T KOG0569|consen  246 EEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA-GFTPEEAQYANLGIGIVNLLSTLV  324 (485)
T ss_pred             HHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            1111222345578899988654443     2233333344566777888888875 999999999999999999999999


Q ss_pred             HHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhcc---C--h-hH---HHHHHHHHHHHHHhhh-hhchhHhhhh
Q 012519          380 GGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA---K--S-PV---MASAWLTLAIGMKSFS-HSGFLVNLQE  449 (461)
Q Consensus       380 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~  449 (461)
                      +.++.||.|||         .++..+..++.+..+++...   .  . .+   ..++..++....++++ .+..+-..+|
T Consensus       325 ~~~lid~~gRR---------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE  395 (485)
T KOG0569|consen  325 SPFLIDRLGRR---------PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE  395 (485)
T ss_pred             HHHHHHhcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence            99999999998         34444444444433332221   1  1 11   2234444455555555 4567788899


Q ss_pred             hccc-cccccc
Q 012519          450 IAPQ-YSGVLH  459 (461)
Q Consensus       450 ~~p~-~~g~~~  459 (461)
                      ++|+ .|..+.
T Consensus       396 Lf~~~~R~aa~  406 (485)
T KOG0569|consen  396 LFPQSARSAAQ  406 (485)
T ss_pred             hCCccchHHHH
Confidence            9985 476654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.95  E-value=2.1e-24  Score=207.04  Aligned_cols=264  Identities=12%  Similarity=0.066  Sum_probs=205.6

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh-----cchH-HHHHHHHHHHHH
Q 012519          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKI-IMAWGVALWSLA  177 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i~  177 (461)
                      ....++..+.........+|.+.++.|.+.+++|++..+...  .+..+++|+++||+     |||| .+.++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            345566677777788889999999999999999999777765  58999999999999     8875 788888888888


Q ss_pred             HHHhhccc-cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCch
Q 012519          178 TFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIF  255 (461)
Q Consensus       178 ~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr  255 (461)
                      ..+.++.. ..+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|..+++.++..+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            77777762 245788888888889888999999999999999999999999999999999999999999999885 5999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHH
Q 012519          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (461)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (461)
                      ..|++.+++.++..+.. +..||+++..++. + +.                  +++...++++++|+|.++..++..++
T Consensus       162 ~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~-~-~~------------------~~~~~~~~~~l~~~~~~~~~l~~~~l  220 (402)
T PRK11902        162 NTYLLMAGLMLAGALTT-LWAPEPEVPARPP-R-SL------------------GEAVVGPLRDFFSRRGAWALLLLIVL  220 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCCCccccccc-c-hh------------------HHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            99999888776655443 3445543321110 0 00                  00122356788999999887777777


Q ss_pred             HHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhH-HHHHHHHHHHHHhhhhHhhc
Q 012519          336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW-SVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~~~~  390 (461)
                      ..........+.+.++.+.+|+++.+.+++....+ ++.+++.+++|++.||+++|
T Consensus       221 ~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~  276 (402)
T PRK11902        221 YKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY  276 (402)
T ss_pred             HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            66554444445556676768999999998876655 45788999999999999987

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.94  E-value=8e-25  Score=211.35  Aligned_cols=326  Identities=14%  Similarity=0.051  Sum_probs=205.6

Q ss_pred             HHHHHHHHHHhhhHhhhh-hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh--
Q 012519          106 LALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--  182 (461)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--  182 (461)
                      +..++.........+.++ .+.+++|++..++|++.+++.++..++++++|+++||+|||++++++..+.+++.....  
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555 45566999999999999999999999999999999999999999887766655433211  


Q ss_pred             -ccc--c-ccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 012519          183 -WAA--D-TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (461)
Q Consensus       183 -~~~--~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f  258 (461)
                       .+.  . ..+...++++++.|.+.....+....+..+.  .+++++.++......++|..++|++++.+.+ .+|++.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f  173 (420)
T PRK09528         97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINF  173 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhH
Confidence             110  0 0111123334444444333334444443322  3467888899999999999999999999876 4899999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHH
Q 012519          259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (461)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (461)
                      ++.+++.++..++.++..++++++.+..+ ++               +.++++....+.++.+|+|+++...+..++...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~  237 (420)
T PRK09528        174 WLGSGSALILLVLLFFAKPDAPSTAKVAN-AL---------------GANASAVSLKDALALLKLPKFWFLVLYVIGVAC  237 (420)
T ss_pred             HHHHHHHHHHHHHHhcccccccchhhhcc-ch---------------hcccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence            99888887766666655544433211000 00               000111223456678899988877666655555


Q ss_pred             HHHHHHHhHHHHHHHhh---CCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHH
Q 012519          339 GFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (461)
Q Consensus       339 ~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (461)
                      .+.....+.|.|+.+.+   +.+..+.+.+.++..++..++.++.|++.||+++|+         .+..+.++.++...+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~l~~~~~~l  308 (420)
T PRK09528        238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN---------ALLLAGTIMAVRIIG  308 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch---------hhHHHHHHHHHHHHH
Confidence            55566667788877653   455566788888888888999999999999999882         223333444444444


Q ss_pred             HhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-ccccccc
Q 012519          416 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLH  459 (461)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~  459 (461)
                      ....++.+..+...++.+...+........+..+..| +.+++..
T Consensus       309 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~  353 (420)
T PRK09528        309 SGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIY  353 (420)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeee
Confidence            4445555544433333333444444444556666665 4566553

>PTZ00207 hypothetical protein; Provisional

Probab=99.94  E-value=3.4e-24  Score=208.33  Aligned_cols=360  Identities=12%  Similarity=0.040  Sum_probs=250.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      .+.++|..+.+......+. ...+.++...+.+++++|++..+++++.++. ....+++++.|++.||+|+|++++++.+
T Consensus        22 ~e~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l   99 (591)
T PTZ00207         22 NEPRRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT   99 (591)
T ss_pred             cccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            3455666555554444433 3345677888999999999999999998874 4456778889999999999999999999


Q ss_pred             HHHHHHHHhhcccc----ccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          173 LWSLATFLTPWAAD----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       173 ~~~i~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      +++++.++++++.+    ++++.+++.|++.|+|.+...+.+...+.+|+| ++||++.|+...+.++|..+.+.+...+
T Consensus       100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888621    589999999999999999999999999999996 7899999999999999997644444444


Q ss_pred             HhhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC---C--cchhHHH-HH-HHh----hcCc----------------
Q 012519          249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP---Q--ISKYELE-YI-LRE----KQKP----------------  301 (461)
Q Consensus       249 ~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~-~~-~~~----~~~~----------------  301 (461)
                      .. .+|+..|++.+++.++..++.+.+.+++|....   +  .++++.. +. .+.    .+.+                
T Consensus       179 ~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~  257 (591)
T PTZ00207        179 FS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIV  257 (591)
T ss_pred             HH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHH
Confidence            33 368999999999988888877777766653221   1  1121111 00 000    0000                


Q ss_pred             --------------------------------cc--------------c-C-----------------CC--------C-
Q 012519          302 --------------------------------LL--------------M-G-----------------NK--------H-  308 (461)
Q Consensus       302 --------------------------------~~--------------~-~-----------------~~--------~-  308 (461)
                                                      ..              . +                 .+        + 
T Consensus       258 yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (591)
T PTZ00207        258 FLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDY  337 (591)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccC
Confidence                                            00              0 0                 00        0 


Q ss_pred             CCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc--cchhhhhhHHHHHHHHHHHHHhhhh
Q 012519          309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ--ASWFSAVPWSVMAFTGYLGGLLSDM  386 (461)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--~~~~~~~~~~~~~i~~~~~g~l~dr  386 (461)
                      ..+.....+++.+++..+|.+++..++.......+...+.++.+..-|.+.+.  ...+.++.++++.+|++..|.+...
T Consensus       338 ~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~  417 (591)
T PTZ00207        338 IAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW  417 (591)
T ss_pred             CCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH
Confidence            00111126788889999999999999999999999999999888853663333  3347889999999999999999855


Q ss_pred             HhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccccccc
Q 012519          387 LIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGV  457 (461)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~  457 (461)
                      ..+|+......|...+.+..+ +.++.+++....+.....+..++.+.++|+.++.......|++.++-|+
T Consensus       418 ~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~  487 (591)
T PTZ00207        418 SQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAK  487 (591)
T ss_pred             HHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHH
Confidence            544432111223334444444 3333333333222234556667778888888888899999988766554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.6e-24  Score=191.05  Aligned_cols=314  Identities=15%  Similarity=0.170  Sum_probs=245.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 012519           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (461)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  177 (461)
                      +..+..+.+..+----.....++.++++++|+|+|.+.+|+++++..+...+.+++..+++.|+|.++.+..++++.+++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34444444444433344567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cchh
Q 012519          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFG  256 (461)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~  256 (461)
                      .++-...   +.+.++.+-.+.|.|.+......+.++.+.|| |+-+..+|+|.+...+|..+++.+...+.++. |||.
T Consensus        91 ~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          91 ILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            9997664   77888999999999999999999999999996 78899999999999999999999999998887 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHH
Q 012519          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (461)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (461)
                      ...+.+.++++.++.++.-. .+++ ..                        ..+....+-..++|+|.-|.+.+.+.++
T Consensus       167 aL~~WAl~allAl~~WlPq~-~r~~-~~------------------------~~~~~~~~~~~vw~~~~aW~vtLfmGlq  220 (395)
T COG2807         167 ALGFWALLALLALLIWLPQA-LREQ-AA------------------------SIATKLVSVRKVWRSPLAWQVTLFMGLQ  220 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhc-cccc-cc------------------------ccccccccccccccCchhHHHHHHHHhh
Confidence            99999999999888877652 1110 00                        0000111223689999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHH
Q 012519          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (461)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (461)
                      .+.+|....|+|.++.|. |+|+.++|.+.+...+.+++..+....+.+|..++        +.+......++.++++.+
T Consensus       221 S~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~--------r~~~~~~~~~~l~G~~G~  291 (395)
T COG2807         221 SLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ--------RPLVVLALLLMLVGLVGL  291 (395)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHH
Confidence            999999999999999996 99999999999999999999999999999996665        233344444455555544


Q ss_pred             hccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhc
Q 012519          417 TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA  451 (461)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (461)
                      .+.+....... .++.+...+..++.......+..
T Consensus       292 ~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs  325 (395)
T COG2807         292 LLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRS  325 (395)
T ss_pred             HHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhc
Confidence            44443332222 34444444444454444444433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8e-26  Score=200.74  Aligned_cols=265  Identities=20%  Similarity=0.162  Sum_probs=224.2

Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhc
Q 012519          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (461)
Q Consensus       126 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  205 (461)
                      .++++-.++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|+.++..+++++++.  +++++++++|.+||+|.++
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~  175 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAF  175 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHH
Confidence            34556688899999999999999999999999999999999999999999999999999  9999999999999999999


Q ss_pred             hhhHHHHHHHhhcCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 012519          206 ALPAMNNMVARWFPQTE-RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP  284 (461)
Q Consensus       206 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (461)
                      .+.+..++++|.+|+++ |++++|+...+.++|..+||++||.+.+..|.+.+|++.++++++-..+.++..++...+.+
T Consensus       176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence            99999999999998664 89999999999999999999999999999999999999999999988888877655432211


Q ss_pred             CcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccch
Q 012519          285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW  364 (461)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  364 (461)
                                               ......++++++++|.++.........+.........++.+..+.+..+.-+.|.
T Consensus       256 -------------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~  310 (464)
T KOG3764|consen  256 -------------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGL  310 (464)
T ss_pred             -------------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceee
Confidence                                     1112246789999999998888777777777777888889888877744448899


Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHH
Q 012519          365 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVM  424 (461)
Q Consensus       365 ~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (461)
                      .+....+..+++..+.|.+.||++..       |......+++..+++.....+.++...
T Consensus       311 ~fLp~~~~y~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~~~~~  363 (464)
T KOG3764|consen  311 AFLPASLSYAIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFATSIAQ  363 (464)
T ss_pred             eecccccchhccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhhhHHH
Confidence            99999999999999999999999955       334555666666666655555555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.94  E-value=3.7e-25  Score=195.33  Aligned_cols=315  Identities=16%  Similarity=0.073  Sum_probs=209.8

Q ss_pred             hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchh
Q 012519          128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL  207 (461)
Q Consensus       128 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  207 (461)
                      ..+.+..-.|.+.+.+.+.+.+.++.+|.++||+|||+++++|++..++...+.+++  .|+..++++|++.|+.-| ..
T Consensus        62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kg-nl  138 (451)
T KOG2615|consen   62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKG-NL  138 (451)
T ss_pred             cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccC-ch
Confidence            334455678999999999999999999999999999999999999999999999999  999777778999999988 56


Q ss_pred             hHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCchhHHHH----HHHHHHHHHHHHHHhcCCCC
Q 012519          208 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---QAGIFGPFVI----FGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       208 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---~~gwr~~f~~----~~~~~~~~~~~~~~~~~~~~  280 (461)
                      ..+.++++|.+++|+|+++++..+..+++|.++||.+|+++.+   ..|- .+|..    ..++...-.....++.||+-
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~-~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGS-YPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhcc-CchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            7889999999999999999999999999999999999999987   3332 22222    11222221233445567765


Q ss_pred             CCCCCcch-hHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchh-------hHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012519          281 DRHPQISK-YELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP-------TWSIIVANAMHSWGFFVILSWMPIYFN  352 (461)
Q Consensus       281 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (461)
                      +.+++.++ .+..+..+...+.        .+.....-...+||+.       ...+.+..+++...+..+.++.+.+..
T Consensus       218 ~~rk~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~  289 (451)
T KOG2615|consen  218 PLRKRNDEHSTLQEAADDRLAL--------LKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTH  289 (451)
T ss_pred             cchhhcccccchhhhhhhhhhh--------cchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence            44433311 1111111110000        0000000112233332       223444455555555555566666656


Q ss_pred             HhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHH
Q 012519          353 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA  432 (461)
Q Consensus       353 ~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (461)
                      ..+|+++.+.|.+++..++...+.+.......+|.+..       .+..+...+..+.-.++.+..............+.
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~  362 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLK  362 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence            77899999999999988877777776666666665522       12333344444444444555555555455555555


Q ss_pred             HHHHhhhhhchhHhhhhhcc-cccccccCC
Q 012519          433 IGMKSFSHSGFLVNLQEIAP-QYSGVLHGI  461 (461)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~p-~~~g~~~gl  461 (461)
                      .+......+....++....| ++||+++|+
T Consensus       363 sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi  392 (451)
T KOG2615|consen  363 SFSTASVVTCLTSLVHKYGPQSQRGTLNGI  392 (451)
T ss_pred             HHHHHHhhHHHHHHHHhcCCcccchHHHHH
Confidence            55566666677777777777 579999874

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=7.8e-24  Score=206.07  Aligned_cols=350  Identities=12%  Similarity=0.103  Sum_probs=222.1

Q ss_pred             HHHHHHHHHHHHHHHhhhH-hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMS-VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLAT  178 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~  178 (461)
                      +..+++..+...+..+.+. ....++.+++|.+.++.+++.+.+.....+..+++|+++|| +||||+++++.++++++.
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~   95 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY   95 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence            3444444444545444443 44556778899999999999999998898999999999999 999999999999999999


Q ss_pred             HHhhccccccHHH-HHHHHHHHhhhhhchhhHHHHHHHhhcCch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 012519          179 FLTPWAADTSLLA-LLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (461)
Q Consensus       179 ~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr  255 (461)
                      ++++++  ++... ++++|+++|+|.|...+...++++|.+|++  +|+++++++..+.++|..+||.+++++.++.|||
T Consensus        96 ~~~~~~--~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         96 FMTGMS--LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHh--ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            999988  65444 558999999999999999999999999877  4588999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCcchhHHHHH------------HHhhcCccccCC-------------
Q 012519          256 GPFVIFGLSGFLWVLVWLSATSSTPDR----HPQISKYELEYI------------LREKQKPLLMGN-------------  306 (461)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~~~-------------  306 (461)
                      +.|++.++..++ .++.+...++..++    .++.+.+.....            .....+......             
T Consensus       174 ~~F~i~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  252 (489)
T PRK10207        174 VTYNLCGAGLII-ALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTII  252 (489)
T ss_pred             HHHHHHHHHHHH-HHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            999996553333 33333222321111    101011100000            000000000000             


Q ss_pred             --CCCCCCCChhHHHHhcchhhHHHHH--HHHHHHHHHHHHHHhHHHHHHHhhCCCcc----ccchhhhhhHHHHHHHHH
Q 012519          307 --KHKPATVIPPFRRLLSKMPTWSIIV--ANAMHSWGFFVILSWMPIYFNFVYHIDLR----QASWFSAVPWSVMAFTGY  378 (461)
Q Consensus       307 --~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~s~~----~~~~~~~~~~~~~~i~~~  378 (461)
                        .++.+.     .+.+|+|.+....+  ...+.+..+....+.++.+.++..+.+..    ....+.+...+..++..+
T Consensus       253 f~~~~~~~-----~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~p  327 (489)
T PRK10207        253 FFREAFKL-----DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASP  327 (489)
T ss_pred             HHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHH
Confidence              000000     14555665444332  24444555556667788888753333210    122333344456667888


Q ss_pred             HHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHH-------Hhcc---ChhHHHHHHHHHHHHHHhhhhhchhHhhh
Q 012519          379 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG-------LTAA---KSPVMASAWLTLAIGMKSFSHSGFLVNLQ  448 (461)
Q Consensus       379 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (461)
                      +.+++.||+++|+.......|...  ++++.+++++.       ....   .+.++.+...++.+.+.++..+.......
T Consensus       328 l~~~l~~rl~~r~~~~~~~~k~~~--G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~  405 (489)
T PRK10207        328 ILAGIYTHLGSKGKDLSMPMKFTL--GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIA  405 (489)
T ss_pred             HHHHHHHHHhhCCCCCCcHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            889999999988654444434333  33333332221       1111   23344455555666667777777777777


Q ss_pred             hhccc-ccccccC
Q 012519          449 EIAPQ-YSGVLHG  460 (461)
Q Consensus       449 ~~~p~-~~g~~~g  460 (461)
                      +..|+ .+|.++|
T Consensus       406 ~~aP~~~~g~~~g  418 (489)
T PRK10207        406 ALVPQHLMGFILG  418 (489)
T ss_pred             HhChHHHHHHHHH
Confidence            77774 5777765

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.94  E-value=8.8e-24  Score=205.72  Aligned_cols=355  Identities=13%  Similarity=0.082  Sum_probs=237.7

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhh-hhh--cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHHHHHHHHHHH
Q 012519          102 SMLALALALCNADRVVMSVAIVPL-SLA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLA  177 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~  177 (461)
                      ..+.+..++..+..+...+.+|.+ .++  +|.+..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            334445555555555566666655 445  89999999999999999999999999999999 89999999999999999


Q ss_pred             HHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE---RARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      .++.+++  ++++.++++|++.|+|.|...+...++++|++|+++   |+.++++...+.++|..+||++++++.++.||
T Consensus        93 ~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924        93 HFMLAMS--IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             HHHHHhc--ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            9999998  889999999999999999999999999999998754   88999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCcchhHHHHHHHhh----------cCccccCCCCC------------
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATS---STPDRHPQISKYELEYILREK----------QKPLLMGNKHK------------  309 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------------  309 (461)
                      ++.|++.++..++..+..+...+   +.|++.+..++++.+......          .......+...            
T Consensus       171 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (475)
T TIGR00924       171 HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAV  250 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999988655554443333222   222111111111111000000          00000000000            


Q ss_pred             -------CCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc----cchhhhhhHHHHHHHHH
Q 012519          310 -------PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFSAVPWSVMAFTGY  378 (461)
Q Consensus       310 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~~~~~~~i~~~  378 (461)
                             ..++.....+..|...+..+++...+.+..+....+.++.+.++..+.+...    .+++.++..+..++..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p  330 (475)
T TIGR00924       251 IIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSP  330 (475)
T ss_pred             HHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHH
Confidence                   0000000011122234455566666667777777777888877754443222    56777777777777777


Q ss_pred             HHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhc---------cChhHHHHHHHHHHHHHHhhhhhchhHhhhh
Q 012519          379 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA---------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQE  449 (461)
Q Consensus       379 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (461)
                      +..++..|+.||+.......|  +.+++++.++++.....         ..+.++.+...++...+..+..+.......+
T Consensus       331 ~~~~~~~~l~~~~~~~~~~~k--~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~  408 (475)
T TIGR00924       331 VLAMIWTRLGRKGKDPTTPLK--FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTK  408 (475)
T ss_pred             HHHHHHHHHHhCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            766666677665332222222  24445555444443331         2456666667777777888888899999999


Q ss_pred             hccc-ccccccC
Q 012519          450 IAPQ-YSGVLHG  460 (461)
Q Consensus       450 ~~p~-~~g~~~g  460 (461)
                      ..|+ .||+.+|
T Consensus       409 ~aP~~~~g~~~g  420 (475)
T TIGR00924       409 IAPQRLMGQMLG  420 (475)
T ss_pred             hCCHHHHHHHHH
Confidence            9886 5888765

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.93  E-value=1e-23  Score=205.14  Aligned_cols=301  Identities=16%  Similarity=0.106  Sum_probs=217.0

Q ss_pred             hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh----hcchH-HHHHHHHHHHHHHHHhhcccccc------
Q 012519          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAADTS------  188 (461)
Q Consensus       120 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~~~------  188 (461)
                      ...+.+.+++|+++.++|++.++..+..++..++.|+++||    +|||| .++.+....+++.+++.+.  ++      
T Consensus        21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~--~~~~~~~~   98 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT--PDFSATGK   98 (437)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC--CCCCcchH
Confidence            45566778899999999999999999999999999999997    67744 6778888888888877766  33      


Q ss_pred             HHHHHHHHHHHhhhhhchhhHHHHHHHhhc-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCchhHHHH
Q 012519          189 LLALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVI  260 (461)
Q Consensus       189 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~gwr~~f~~  260 (461)
                      ++.+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+..       ..+||+.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i  178 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence            456777888899988888888888899987 57899999999999999998888777665543       4579999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHH
Q 012519          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (461)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (461)
                      .+++.++..++.++..+|++++.+.                    +++++......+++++++|.++..++..++.....
T Consensus       179 ~~~l~~~~~~~~~~~~~e~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  238 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKERYSEIPK--------------------NIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAF  238 (437)
T ss_pred             HHHHHHHHHHHHHcCCEecCCCCCc--------------------ccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            9998888777766666665422110                    00011122345678899999999888888888777


Q ss_pred             HHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhcc-
Q 012519          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-  419 (461)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  419 (461)
                      +....+.+.|.+...+ +....+.+.....++.+++.++.+++.||+|+|       +  ....+.++.+++.+..... 
T Consensus       239 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-------~--~~~~~~~~~~~~~~~~~~~~  308 (437)
T TIGR00792       239 NIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-------I--LFAGGILLMVLGYLIFFFAG  308 (437)
T ss_pred             HHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-------H--HHHHHHHHHHHHHHHHHHcc
Confidence            7776677777766555 445566677777888999999999999999987       2  2233333333333333322 


Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc
Q 012519          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP  452 (461)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  452 (461)
                      ++.+...+..++.+++.+...+..++...|..+
T Consensus       309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  341 (437)
T TIGR00792       309 SNLPLILVLIILAGFGQNFVTGLVWALVADTVD  341 (437)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            233333444444555555566667777776643

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.92  E-value=6.6e-23  Score=196.91  Aligned_cols=317  Identities=11%  Similarity=-0.038  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHHhhh-HhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHHhh
Q 012519          105 ALALALCNADRVVM-SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATFLTP  182 (461)
Q Consensus       105 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~  182 (461)
                      ++..++.+.....+ ++..+.+.+++|.+.+|+|++.+++.++..++++++|+++||+|| |+++.++.++..++..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889         8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555 555666778899999999999999999999999999999999965 7788988988888888888


Q ss_pred             ccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhh--------cCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW--------FPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      +.  ++++.+++.|++.|++.+...+...++..++        .....|.+..|      .+|..+||.+++.+....+|
T Consensus        88 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~  159 (418)
T TIGR00889        88 QV--TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSN  159 (418)
T ss_pred             Hh--cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchh
Confidence            88  8999999999999998877777666554222        22223444444      46888888888877433335


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHH
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (461)
                      + +|++.+++.++..++ .+..||.|+..++.+.+                   .++....+.++++|+|+++...+..+
T Consensus       160 ~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~-------------------~~~~~~~~~~~~~k~~~~~~~~~~~~  218 (418)
T TIGR00889       160 I-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMS-------------------IKVMLGLDAFILFKNKRMAIFFFFSM  218 (418)
T ss_pred             H-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccC-------------------HHHHhhhhHHHHhcCCCeeeHHHHHH
Confidence            5 455666655555544 34556654322110000                   00000113456889999888888888


Q ss_pred             HHHHHHHHHHHhHHHHHHHhhCCCc--------cccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhh
Q 012519          335 MHSWGFFVILSWMPIYFNFVYHIDL--------RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (461)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (461)
                      +..........+.+.|+++. |.++        ...+...++..+..+++.++.|++.||+++|         .++..+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r---------~~l~~~~  288 (418)
T TIGR00889       219 LLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK---------KVMLLSL  288 (418)
T ss_pred             HHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHH
Confidence            87776666778888888774 6554        4568888888889999999999999999988         2344444


Q ss_pred             HHHHHHHHHHhccC-hh---HHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          407 IAPGIALIGLTAAK-SP---VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       407 ~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      ++.++......... ..   +..+...++.+...+...+....++.+..| +++|+++|
T Consensus       289 ~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g  347 (418)
T TIGR00889       289 VAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQG  347 (418)
T ss_pred             HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            45554443333322 11   222223334444445555666677788887 45887765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.92  E-value=6.2e-22  Score=189.34  Aligned_cols=265  Identities=12%  Similarity=0.009  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHH--HHHHHHHHHHhHhhhhh-hhhhhcchHHHHHHHHHH-HH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIV--QSSFLWGYLVSPIAGGT-LVDYYGGKIIMAWGVALW-SL  176 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~g~-l~dr~Grr~~~~~~~~~~-~i  176 (461)
                      +..+...++..+.......+.+|.+.++.|.+.+++|++  .++..+...+.++++++ ..||+||||..++.+.+. .+
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            556677888888888899999999999999999999997  46678888888888855 799999999876655432 22


Q ss_pred             HHHHhh-cccccc-HHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          177 ATFLTP-WAADTS-LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       177 ~~~~~~-~~~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      .....+ +....+ ...++..-++.++..+...+...++..|..++++++...+....+..+|..+|+.+.+++.+++||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            222222 211122 334445556667777888888899999999988889999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHH
Q 012519          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (461)
                      |..|++.+++.++..+..++..|+++++.+.                        ++....++++.+|+|.++...+..+
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~  218 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA------------------------PLARRASLFRFFRRPLAWSLLALAL  218 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc------------------------chhhHHHHHHHHcCcCHHHHHHHHH
Confidence            9999999988877666665554443221110                        0001235678899999988888888


Q ss_pred             HHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHH-HHHHHHHHHHHhhhhHhhc
Q 012519          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~  390 (461)
                      +..........+.+.|+++ .|+++.+.+.......+ ..+++.++.|++.||++++
T Consensus       219 l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       219 LSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            8888888888899999988 59999999998887764 5567789999999999988

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.92  E-value=1.7e-23  Score=207.62  Aligned_cols=315  Identities=16%  Similarity=0.087  Sum_probs=219.7

Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhc
Q 012519          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (461)
Q Consensus       126 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  205 (461)
                      .+.+..+.....+..+++.+|.++|++++|+++||+|||+++++++++..++.++.+++  +|++.+++.|+++|++.+.
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccc
Confidence            35566788899999999999999999999999999999999999999999999999999  9999999999999999999


Q ss_pred             hhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 012519          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ  285 (461)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (461)
                      .......++.|++++++|+.+..+ ......|..++++.++++..  +||+.+++..++.++.+++ +++.+|+|+....
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLS  263 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHH
Confidence            999999999999999999999999 88888888888888888887  8999999999998877666 5566688765422


Q ss_pred             c-chhHHHHHHHhhcC------cc------c-cCC--CCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 012519          286 I-SKYELEYILREKQK------PL------L-MGN--KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPI  349 (461)
Q Consensus       286 ~-~~~~~~~~~~~~~~------~~------~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (461)
                      . +.++..+..++..+      ..      . ..+  ......+...+.++++.|++....+...+..+.+.....-++.
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~  343 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL  343 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence            2 22333333222110      00      0 000  0001112234667788876555444444444332222222222


Q ss_pred             HHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhH---HHH
Q 012519          350 YFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV---MAS  426 (461)
Q Consensus       350 ~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  426 (461)
                      .... +|.+   ........+.....+....+...|+.|||         .....+.+..+++++...+.....   ...
T Consensus       344 ~~~~-lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (521)
T KOG0255|consen  344 NVSG-LGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRR---------PPLFLSLFLAGIGLLLFGWLPDDLGGWLHW  410 (521)
T ss_pred             hhhh-cCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence            2222 2332   22333444446677777778999999877         455555555555555554443222   355


Q ss_pred             HHHHHHHHHHhhhhhchhHhhhhhccc-cccccc
Q 012519          427 AWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLH  459 (461)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~  459 (461)
                      ....++.++.+..+...+.+..|+.|. .|+.+.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~  444 (521)
T KOG0255|consen  411 ILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAV  444 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            566667777777777778889999985 355543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.91  E-value=5.2e-24  Score=192.63  Aligned_cols=357  Identities=14%  Similarity=0.148  Sum_probs=247.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhc-C-------CCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcch
Q 012519           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAH-G-------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK  164 (461)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr  164 (461)
                      ..+++...+.+..++.+.+.+|...++.+.|.+...+ +       .++...+.+..+..+|..+|++++|++.||+|||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            4567788899999999999999999999988887655 2       3456778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccc-----ccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHH
Q 012519          165 IIMAWGVALWSLATFLTPWAAD-----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA  239 (461)
Q Consensus       165 ~~~~~~~~~~~i~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  239 (461)
                      +++...+++..++++++++...     .-.+++.+.|++.|+|.|+.+|...++.+|...+++||...+...+.+++|..
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            9999999999999998887621     23678899999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhhc---------------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCcccc
Q 012519          240 IGLVLSPILMSQA---------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLM  304 (461)
Q Consensus       240 ~g~~~~~~l~~~~---------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (461)
                      .|.+++-.+..-+               =||..|.+.++++++....-+ ..||+++...-.. .+.+...++.++....
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M~Et~~Y~al~~-~~~~~a~~d~~k~~~~  272 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KMPETARYTALVS-KKLKQAAGDMKKVLSV  272 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhHHHHhh-cCHhhhhhcccccccc
Confidence            8888776664311               299999888887776544433 3355554331111 1111111111111000


Q ss_pred             ---------CCCCCCCCCChhHHHHhcc---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccch--------
Q 012519          305 ---------GNKHKPATVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW--------  364 (461)
Q Consensus       305 ---------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------  364 (461)
                               ...+.++.....+...+..   +.+...+..+|+.-.++|....+....++. .|+.+.....        
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~  351 (538)
T KOG0252|consen  273 DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAE  351 (538)
T ss_pred             ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHH
Confidence                     0000111111112222222   456677888899999999998888888887 4776665544        


Q ss_pred             hhhhhH-HHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChh----HHHHHHHHHHHHHHhhh
Q 012519          365 FSAVPW-SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP----VMASAWLTLAIGMKSFS  439 (461)
Q Consensus       365 ~~~~~~-~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  439 (461)
                      ...+.. .+.+.|..+...++|++||+         .+...+++++.+..+.+....+.    ...++...+..++..++
T Consensus       352 ~~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG  422 (538)
T KOG0252|consen  352 GNLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG  422 (538)
T ss_pred             HHHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC
Confidence            111111 22233556777889999988         66677888888877776665441    12233333444444444


Q ss_pred             h-hchhHhhhhhccc-ccccccCC
Q 012519          440 H-SGFLVNLQEIAPQ-YSGVLHGI  461 (461)
Q Consensus       440 ~-~~~~~~~~~~~p~-~~g~~~gl  461 (461)
                      . .....+..|++|. .||+..|+
T Consensus       423 Pn~ttfivpaE~FParvR~t~hGI  446 (538)
T KOG0252|consen  423 PNATTFIVPAEIFPARVRSTCHGI  446 (538)
T ss_pred             CCceeEEeehhhchHHHhhhhhhH
Confidence            3 4566778899995 59998774

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.91  E-value=2.6e-21  Score=189.50  Aligned_cols=350  Identities=15%  Similarity=0.104  Sum_probs=212.4

Q ss_pred             HHHHHHHHHHHHHhhhHhh-hhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHHHHHHHHHHHHHH
Q 012519          103 MLALALALCNADRVVMSVA-IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFL  180 (461)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~  180 (461)
                      .+++..+...+..+.+... ...+.+++|.+..+.+++.+.+........+++|+++|| +|||++++++.++.+++.++
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444 445668999999999999988887777777899999999 59999999999999999998


Q ss_pred             hhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 012519          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (461)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f  258 (461)
                      ++++. ++.+.++++|+++|+|.|...+...+++.|++|+++  |..++++++.+.++|..+||.+++++.+++|||+.|
T Consensus       105 ~~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F  183 (500)
T PRK09584        105 VAWSG-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF  183 (500)
T ss_pred             HHHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            88861 356677889999999999999999999999997543  556889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---HHhcCCCCCCCC--CcchhHHHHHH-----HhhcCccccCCCCCCCC---------------C
Q 012519          259 VIFGLSGFLWVLVW---LSATSSTPDRHP--QISKYELEYIL-----REKQKPLLMGNKHKPAT---------------V  313 (461)
Q Consensus       259 ~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------------~  313 (461)
                      ++.++..++..+..   ....++..++..  ..+........     -...........+....               .
T Consensus       184 ~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (500)
T PRK09584        184 ALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKE  263 (500)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99776544433322   223333211111  11111100000     00000000000000000               0


Q ss_pred             ChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHH--hhCCCcc------ccchhhhhhHHHHHHHHHHHHHhhh
Q 012519          314 IPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF--VYHIDLR------QASWFSAVPWSVMAFTGYLGGLLSD  385 (461)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~s~~------~~~~~~~~~~~~~~i~~~~~g~l~d  385 (461)
                      ....++.-+ ++.+.. +..++....++......+.++..  ..+.+..      ..+++.++..+..++..++.+++.+
T Consensus       264 ~~~~~~~~~-~~~~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~  341 (500)
T PRK09584        264 AFAMKGAAR-RKMIVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYN  341 (500)
T ss_pred             HhhcCHHHH-HHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            000001111 222222 22334444555566666666543  1122211      2445556666666777777767667


Q ss_pred             hHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccCh---------hHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-cc
Q 012519          386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS---------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YS  455 (461)
Q Consensus       386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~  455 (461)
                      |.++|..   .  ...+.+++++.+++++.+.....         .++.+...++...+..+..+.....+.+..|+ .|
T Consensus       342 ~l~~r~~---~--~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~r  416 (500)
T PRK09584        342 KMGDRLP---M--PHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLM  416 (500)
T ss_pred             HhCcCCC---c--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHH
Confidence            7665521   1  12334555555555544332211         33455556666777777778888888888885 58


Q ss_pred             ccccC
Q 012519          456 GVLHG  460 (461)
Q Consensus       456 g~~~g  460 (461)
                      |.++|
T Consensus       417 g~~~g  421 (500)
T PRK09584        417 GFIMG  421 (500)
T ss_pred             HHHHH
Confidence            88776

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.89  E-value=6.8e-20  Score=174.95  Aligned_cols=326  Identities=15%  Similarity=0.063  Sum_probs=216.7

Q ss_pred             HHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhh----hhcchHHHHHH-HHHHHHHHHHhhcccc
Q 012519          112 NADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGGKIIMAWG-VALWSLATFLTPWAAD  186 (461)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~~~~~~~  186 (461)
                      .+......+.++.+.+++|.+..+.+++..+..+...+.+++.|+++|    |+||||.++++ .+...++.++.+++  
T Consensus        17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~--   94 (477)
T TIGR01301        17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA--   94 (477)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--
Confidence            444555566667788899999999999999999999999999999999    59999988774 66666676777776  


Q ss_pred             ccHH-----------------HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          187 TSLL-----------------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTER--ARAVAIAMGGFTSGNAIGLVLSPI  247 (461)
Q Consensus       187 ~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~  247 (461)
                      ++.+                 .++++-.+..++.....+...++++|.+|+++|  +.+.++.+.+.++|.++|+.++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~  174 (477)
T TIGR01301        95 ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY  174 (477)
T ss_pred             chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432                 233333445567778888999999999998765  689999999999999999999987


Q ss_pred             H--Hhhc-------------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCC
Q 012519          248 L--MSQA-------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPAT  312 (461)
Q Consensus       248 l--~~~~-------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (461)
                      .  .+.+             +.|..|++.+++.++..+...+..+|.|....+...++ +     .       ++.++..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-~-----~-------~~~~~~~  241 (477)
T TIGR01301       175 SGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-E-----A-------APPSKHG  241 (477)
T ss_pred             HhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-h-----c-------ccccccc
Confidence            5  2222             56889999988888888888888887654221110000 0     0       0000001


Q ss_pred             CChhHHHHhc---c--hhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-hhCCCccc----------cchhhhhhHHHHHHH
Q 012519          313 VIPPFRRLLS---K--MPTWSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQ----------ASWFSAVPWSVMAFT  376 (461)
Q Consensus       313 ~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~----------~~~~~~~~~~~~~i~  376 (461)
                      ....++++++   +  |.++.+++..++.+++++.+..|.+.|+.+ .|+-++..          ..+......+...+.
T Consensus       242 ~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~  321 (477)
T TIGR01301       242 EEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGIT  321 (477)
T ss_pred             hhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112333333   2  678999999999999999999999988874 45543321          122334444555566


Q ss_pred             HHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccCh---------------------hHHHHHHHHHHHHH
Q 012519          377 GYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS---------------------PVMASAWLTLAIGM  435 (461)
Q Consensus       377 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~  435 (461)
                      +++..++.+|+|+|        |.+..++.++.++++....+.+.                     .+..+..+...+..
T Consensus       322 s~~l~~l~~~~g~~--------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~  393 (477)
T TIGR01301       322 SIGMEKLCRGWGAG--------KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIP  393 (477)
T ss_pred             HHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHH
Confidence            67777888888753        23334444444444433322111                     13344444555555


Q ss_pred             HhhhhhchhHhhhhhccc---ccccccC
Q 012519          436 KSFSHSGFLVNLQEIAPQ---YSGVLHG  460 (461)
Q Consensus       436 ~~~~~~~~~~~~~~~~p~---~~g~~~g  460 (461)
                      ....+..-++++.+..|+   ..|..+|
T Consensus       394 ~A~~~siPfal~s~~~~~~~~~~G~~mg  421 (477)
T TIGR01301       394 LAITYSIPFALASIRSSNLGAGQGLSMG  421 (477)
T ss_pred             HHHHHHHhHHHHHHHccccCCCCcchhh
Confidence            666667777777777763   3466555

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.88  E-value=1.3e-26  Score=226.17  Aligned_cols=342  Identities=19%  Similarity=0.181  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHHhhhHhhhhhhh--hhcCC---------CchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH
Q 012519          105 ALALALCNADRVVMSVAIVPLS--LAHGW---------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (461)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~---------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  173 (461)
                      .++.+..+++....+...+...  ..+..         +..+.+++.+...+|..+|++++|.++||+|||++++++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            4555777777777766655544  22222         223578999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccc---cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012519          174 WSLATFLTPWAADT---SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (461)
Q Consensus       174 ~~i~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~  250 (461)
                      ..++.++.+++  +   +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+.+
T Consensus        86 ~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~  163 (451)
T PF00083_consen   86 MIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY  163 (451)
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999  8   999999999999999999999999999999999999999999999999999999888766644


Q ss_pred             hc---CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc-chhHHHHHHHhhcCc-----cccCCC---CCCCCCChhHH
Q 012519          251 QA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQKP-----LLMGNK---HKPATVIPPFR  318 (461)
Q Consensus       251 ~~---gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~  318 (461)
                      ..   +||..+++.++++++..+.. .+.||+|+..-.. +.++.++..++....     ...+..   ++.......++
T Consensus       164 ~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (451)
T PF00083_consen  164 YSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWR  242 (451)
T ss_pred             ccccccccccccccccccccccccc-cccccccceecccccccccccccccccccccccccccccccccccccccceeee
Confidence            34   49999999988887655544 5679998754222 222333322221100     000000   00000113355


Q ss_pred             HHhcchh----hHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcc
Q 012519          319 RLLSKMP----TWSIIVANAMH-SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (461)
Q Consensus       319 ~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (461)
                      ++++++.    +...+....+. ....+....+.+.++++ .+.+..  -.......+...++.+++.++.||+|||+  
T Consensus       243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~--  317 (451)
T PF00083_consen  243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRK--  317 (451)
T ss_pred             eccccccccccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccc--
Confidence            6666532    33333333333 22334445566666655 466655  23334445566777888889999999983  


Q ss_pred             hhhhHHHHHHHhhHHHHHHHHHHh-----ccCh----hHHHHHHHHHHHHHHh-hhhhchhHhhhhhccc-ccccccCC
Q 012519          394 VTLTRKILQSIGFIAPGIALIGLT-----AAKS----PVMASAWLTLAIGMKS-FSHSGFLVNLQEIAPQ-YSGVLHGI  461 (461)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~-~~g~~~gl  461 (461)
                             +...+....+++.+.+.     ..+.    ....+....+.....+ ...+..+.+..|++|. .|+++.|+
T Consensus       318 -------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~  389 (451)
T PF00083_consen  318 -------LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGL  389 (451)
T ss_pred             -------ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence                   22333333333332221     1111    1222222222323333 2235556888999995 58777663

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.88  E-value=1.2e-19  Score=174.10  Aligned_cols=350  Identities=12%  Similarity=0.075  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh-cchHHHHHHHHHHHHHHHHh
Q 012519          104 LALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLT  181 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~  181 (461)
                      ++...+...+..+.+...+|. +.+++|.+..+.+.+.+.+.....++.+++|+++||+ ||||+++++.++..++.++.
T Consensus        14 l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll   93 (493)
T PRK15462         14 VVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL   93 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Confidence            333344444444445445554 4567899999999999999999999999999999999 99999999999999998777


Q ss_pred             hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 012519          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (461)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~  259 (461)
                      +... .+...++++..+.++|.|...+...++++|.+|++  +|..++++...+.++|..++|.+.+++.+..||++.|.
T Consensus        94 ~~~~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~  172 (493)
T PRK15462         94 GASE-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFG  172 (493)
T ss_pred             HHhh-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHH
Confidence            6541 22233444445555666777777889999999875  69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC----CCCCcchhHHHH---------------HHHhh-cCcccc--------------C
Q 012519          260 IFGLSGFLWVLVWLSATSSTPD----RHPQISKYELEY---------------ILREK-QKPLLM--------------G  305 (461)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------------~~~~~-~~~~~~--------------~  305 (461)
                      +.++..++.++..+...+..++    +.+..++++...               ..... ......              -
T Consensus       173 iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (493)
T PRK15462        173 LAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLA  252 (493)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776554444433332211111    011111110000               00000 000000              0


Q ss_pred             CCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----hCCCccccchhhhhhHHHHHHHHHHH
Q 012519          306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV-----YHIDLRQASWFSAVPWSVMAFTGYLG  380 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~i~~~~~  380 (461)
                      .....+....   +--|-..+..+.+...+.+..+....+-+..|.++.     +|++ ....++.++..+..++.+++.
T Consensus       253 ~~~~~~~~~~---er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~  328 (493)
T PRK15462        253 KIYRKAENQK---QRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFL  328 (493)
T ss_pred             HHHHhcCCHH---HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHH
Confidence            0000000000   000001223333444444445555556666666653     2332 235677788888888888888


Q ss_pred             HHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHh--c---c----ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhc
Q 012519          381 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--A---A----KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA  451 (461)
Q Consensus       381 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (461)
                      +++-.|..+|+.......|..  ++++.++++.+.+.  .   .    .+.++.+...++...+..+..|...+.+.++.
T Consensus       329 a~lw~~l~~~~~~~s~~~Kfa--~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~la  406 (493)
T PRK15462        329 AWVVKESVAGNRTVRIWGKFA--LGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIE  406 (493)
T ss_pred             HHHHHHHhcCCCCCCcHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhC
Confidence            888777755433333334443  33344444333221  1   1    13344445555566666777888899999999


Q ss_pred             cc-ccccccC
Q 012519          452 PQ-YSGVLHG  460 (461)
Q Consensus       452 p~-~~g~~~g  460 (461)
                      |+ .+|..+|
T Consensus       407 P~~~~g~~mg  416 (493)
T PRK15462        407 IPGVTGVLTG  416 (493)
T ss_pred             hHHHHHHHHH
Confidence            96 4887765

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.87  E-value=1.2e-19  Score=164.79  Aligned_cols=280  Identities=15%  Similarity=0.139  Sum_probs=228.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHH
Q 012519           92 FITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (461)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  171 (461)
                      ...++||.++++.++..+.+.+.+..+++.......-|+ +...+-|+.-+|++.+....+++-|+.|++|-|...+++.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            356788999999999999999999999999999999999 8888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccc----ccHH--HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012519          172 ALWSLATFLTPWAAD----TSLL--ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS  245 (461)
Q Consensus       172 ~~~~i~~~~~~~~~~----~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~  245 (461)
                      .+.++|..+-..+..    +.++  ....+..+.+.+.-.....-..+..-|+++++|..+..+-..+..+|..+|.++.
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            999999998666521    4556  7778889999888877777778888999999999999999999999999999988


Q ss_pred             HHHHhhc------Cchh--HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhH
Q 012519          246 PILMSQA------GIFG--PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF  317 (461)
Q Consensus       246 ~~l~~~~------gwr~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (461)
                      ..+..+-      .|-.  .|+..+.++.+.+++..+..+++|+..+.......                 .........
T Consensus       197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~-----------------~~~~f~~si  259 (480)
T KOG2563|consen  197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL-----------------QDASFPKSI  259 (480)
T ss_pred             ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh-----------------hcCcHHHHH
Confidence            8887643      3554  35555555555556666666665554432211111                 122245678


Q ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      ++.++|+++....+.+......+++..+.+-.-+... |++...+|+......+++++++++.|.+.||.++-
T Consensus       260 ~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f  331 (480)
T KOG2563|consen  260 KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF  331 (480)
T ss_pred             HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccc-cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            8999999999999999998888888888777666553 88888999999999999999999999999998765

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1.1e-21  Score=166.36  Aligned_cols=341  Identities=15%  Similarity=0.152  Sum_probs=237.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVA  172 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~  172 (461)
                      ..+|...+..+++..|-+++..-..+....++..|.+++.++..++.+.|.....+..+++|++.|| +|-|..-++-+.
T Consensus        39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~  118 (459)
T KOG4686|consen   39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI  118 (459)
T ss_pred             hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence            3456677788888888888888888888899999999999999999999999999999999999996 788887777777


Q ss_pred             HHHHHHHHhhccc-cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012519          173 LWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (461)
Q Consensus       173 ~~~i~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  251 (461)
                      +..+|.++++... .+.+|.+.++|++.|+|.-....+.++++.-|+..|+.+.++|+......+|..+--.+.+++.+.
T Consensus       119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            7777777655431 278999999999999998888889999999999999999999999999999998887777777765


Q ss_pred             cCc------hhHH---HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhc
Q 012519          252 AGI------FGPF---VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLS  322 (461)
Q Consensus       252 ~gw------r~~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (461)
                      .+-      +...   +..+...+..-+......        ...++.+++..+.....      ..+.....+.++  -
T Consensus       199 ~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l--------g~~D~rAerilh~e~g~------~Ge~pkLtdv~~--f  262 (459)
T KOG4686|consen  199 MGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL--------GLSDDRAERILHLEEGF------LGEEPKLTDVNT--F  262 (459)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhhHHHHHHhhhcCc------ccCCcccccccc--c
Confidence            431      1111   111111111111111110        00111122221111100      000111111111  1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHH
Q 012519          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ  402 (461)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~  402 (461)
                      .|.+|.+.++.+++..+.+.+...-|.++++.+|+|+..++.+.+.......+..++.|.++||.|++        .+.+
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n--------~~wv  334 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN--------LWWV  334 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce--------ehhH
Confidence            47899999999999999999999999999999999999999999999999999999999999999988        1222


Q ss_pred             HHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      ..+.+....+-..+.++  .+.....+.+.+..+.......|.++..+.|+ +-|++.|
T Consensus       335 ~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTayg  391 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYG  391 (459)
T ss_pred             HHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHH
Confidence            22222222222222222  11122234444444555556678888888886 5888776

>PRK09669 putative symporter YagG; Provisional

Probab=99.86  E-value=4.4e-19  Score=172.49  Aligned_cols=301  Identities=15%  Similarity=0.074  Sum_probs=200.7

Q ss_pred             HhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh----hcch-HHHHHHHHHHHHHHHHhhcccc----ccH
Q 012519          119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGK-IIMAWGVALWSLATFLTPWAAD----TSL  189 (461)
Q Consensus       119 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~----~~~  189 (461)
                      ......+.+++|++..++|++.++..+..++..|+.|+++||    +||| +.++.+.+..+++.++....+.    ..+
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            345566778899999999999999999999999999999998    7875 5666777777777665544411    224


Q ss_pred             HHHHHHHHHHhhhhhchhhHHHHHHHhhc-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCchhHHHHH
Q 012519          190 LALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIF  261 (461)
Q Consensus       190 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~gwr~~f~~~  261 (461)
                      +.+++..++.+.+.........++.+|+. ++++|.+..++...+..+|..+++.+...+..       ..+|+..+.+.
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~  189 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM  189 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            56666777777777777777889999988 56889999999888888888888766554433       24688888888


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (461)
                      ++++++..+..++..+|+++..+                       +++.+...+++.++|||.++..++..++......
T Consensus       190 ~ii~~v~~~~~~~~~~e~~~~~~-----------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~  246 (444)
T PRK09669        190 GLLGVVLFFCCFFMTKERYTPEV-----------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVV  246 (444)
T ss_pred             HHHHHHHHHHHhCCeEEecCCCC-----------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            88777766655555544322110                       0111233567788999999988887777666665


Q ss_pred             HHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHH-HHHHHh-cc
Q 012519          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI-ALIGLT-AA  419 (461)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~  419 (461)
                      ......++|.+...+ ++...+.+.....+..+++.++.+++.||+|+|       +....  +.+...+ ...... ..
T Consensus       247 ~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-------~~~~~--~~~~~~~~~~~~~~~~~  316 (444)
T PRK09669        247 TRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRV-------RAFKW--TIVAFVILSALIFFIPP  316 (444)
T ss_pred             HHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------HHHHH--HHHHHHHHHHHHHHhCc
Confidence            555555555444333 223334445555567788888999999999987       22222  2222221 221222 22


Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc
Q 012519          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP  452 (461)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  452 (461)
                      ++.+..++..++.+.+.+...+..+++..|+.+
T Consensus       317 ~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d  349 (444)
T PRK09669        317 SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVD  349 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344444444455566666667777888887764

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.85  E-value=1.3e-18  Score=164.27  Aligned_cols=322  Identities=15%  Similarity=0.094  Sum_probs=229.1

Q ss_pred             HHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhc-chHHHHHHHHHHHHHHHHhhc
Q 012519          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-GKIIMAWGVALWSLATFLTPW  183 (461)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~  183 (461)
                      ...+++.+.....+.|.++.+-++.|.|..|+|.+.+...+...+.++++|.++||++ +||.+.+..++.++.......
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566667778888889999999999999999999999999999999999986 677887877877777777777


Q ss_pred             cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhcC---chhHHH
Q 012519          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL-SPILMSQAG---IFGPFV  259 (461)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~~~~g---wr~~f~  259 (461)
                      .  ++++.+++.-++..+......|...++.-+...  +++.-.|-.-...++|.+++... +..+....+   ....++
T Consensus        88 ~--~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   88 S--SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             h--ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            7  889998888888888888888899998888874  44556666667777777776544 233333333   234566


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHH
Q 012519          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (461)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (461)
                      +.+...++.....+ ..|+.|.+++.                    +...++....+..+++|+|+++...+..++....
T Consensus       164 i~~~~~~ll~~~~l-~lp~~~~~~~~--------------------~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~  222 (400)
T PF03825_consen  164 IAAILSLLLAGFAL-FLPKTPPKRSA--------------------KESVKKLLGLDALKLLKNPRFLVFLLAAFLIGIS  222 (400)
T ss_pred             HHHHHHHHHHHHHH-hCCCCcccccc--------------------CCCcccccchHHHHHhcCccHHHHHHHHHHHHHH
Confidence            66655544443333 34555422111                    1111112223445899999999999999999999


Q ss_pred             HHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhcc
Q 012519          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (461)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (461)
                      ......+.+.|+++..|.+....+.+.++..+..++.-+..+++.+|+|.+         .++.++.+..++=..++...
T Consensus       223 ~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  223 HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999997447777778877787788888888888888888876         45566666666665555555


Q ss_pred             -ChhHHHHHHHHH----HHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          420 -KSPVMASAWLTL----AIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       420 -~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                       ++.+..++...+    -+..++........++.+..|+ .++++.|
T Consensus       294 ~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~  340 (400)
T PF03825_consen  294 SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQG  340 (400)
T ss_pred             cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence             333333333333    4555666677778888888885 4777655

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.83  E-value=3.7e-19  Score=172.15  Aligned_cols=302  Identities=18%  Similarity=0.185  Sum_probs=229.1

Q ss_pred             hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhh----hhcchH-HHHHHHHHHHHHHHHhhcc-c-c----cc
Q 012519          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGGKI-IMAWGVALWSLATFLTPWA-A-D----TS  188 (461)
Q Consensus       120 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~-~~~~~~~~~~i~~~~~~~~-~-~----~~  188 (461)
                      ...+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+|||| .++++.+..+++.++.... + .    ..
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4456677788999999999999999999999999999999    899776 5567878888877776654 1 0    12


Q ss_pred             HHHHHHHHHHHhhhhhchhhHHHHHHHhhcC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CchhHHHH
Q 012519          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVI  260 (461)
Q Consensus       189 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------gwr~~f~~  260 (461)
                      ...+.+..++..++.........++..|..+ +++|.+..++-..+..+|..+...+.+.+.+..       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            3345667777789989899999999999997 578999999999999999877777666665432       59999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHH
Q 012519          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (461)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (461)
                      .+++.++..++..+..+|.+++.+                     +++++.+..+.++.+++||.++...+..++.....
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~---------------------~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~  241 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVT---------------------EQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAF  241 (428)
T ss_pred             HHHHHHHHhhhhhheeeecccccc---------------------ccccccccccchhhhcccchHHHHHHHHHHHHhhh
Confidence            999888888888887777221111                     12223334556789999999999999999999998


Q ss_pred             HHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhcc-
Q 012519          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-  419 (461)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  419 (461)
                      .......++|.+...|.+ ...+.+.....++.+++.++.++++||+|+|+         ....+.+..+++.+..... 
T Consensus       242 ~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~---------~~~~~~~~~~~~~~~~~~~~  311 (428)
T PF13347_consen  242 ALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK---------VYIIGLLLAALGFLLLFFLG  311 (428)
T ss_pred             hhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee---------ehhhhHHHHHHHHHHHHHHH
Confidence            888889999999987776 55677777888899999999999999999983         2233333333333333322 


Q ss_pred             -ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc
Q 012519          420 -KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP  452 (461)
Q Consensus       420 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  452 (461)
                       ++.+..++..++.+.+.+......+++..|+.+
T Consensus       312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id  345 (428)
T PF13347_consen  312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVID  345 (428)
T ss_pred             hhhHHHHHHHHHHhHhhhcccccccccccccchh
Confidence             466666666667777777777777888887775

>TIGR00788 fbt folate/biopterin transporter

Probab=99.83  E-value=6.4e-19  Score=171.26  Aligned_cols=342  Identities=12%  Similarity=-0.006  Sum_probs=215.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhc-----chHHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKIIMAWGVAL  173 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~  173 (461)
                      ..+.++...++..+..........+.+.+++|++.++++...++..+...+-.+ +|+++||++     ||+.++++.++
T Consensus        26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            345556666777777644445566777778999999999999999999998655 999999998     77788888777


Q ss_pred             HH-HHHHHhhccccccHH-HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHH---HHHHHHHHHHHHHHHHHHHHHH
Q 012519          174 WS-LATFLTPWAADTSLL-ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARA---VAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       174 ~~-i~~~~~~~~~~~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      .+ ++....+..  ++.. ...+..++.+++.+...+++-++..|..+ +++...   .++......+|..+|+.+++.+
T Consensus       105 ~~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l  181 (468)
T TIGR00788       105 GSAILYGLLPGK--VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL  181 (468)
T ss_pred             HHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence            63 444444443  4544 44448899999999999999999999998 555443   3333444568999999999999


Q ss_pred             HhhcCchhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhH
Q 012519          249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPD-RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (461)
Q Consensus       249 ~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (461)
                      .++++||..|++.+++.++..+. ..+.+|++. ..++..+++..........     .....++.....++.+++|.++
T Consensus       182 ~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~i~  255 (468)
T TIGR00788       182 LDKTLTRILFLITAALLLLQLFV-SNLSKERRAFVRPRIGTYLEMNMALLTLG-----VLANVKVQILGLRGAIQLLEIA  255 (468)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHH-HHhcccccccccccccccchhhhhhhhhh-----HHHHHHHHHHHHHHHHhcHHHH
Confidence            99999999999998888776443 344455431 1111000000000000000     0000001123455667888888


Q ss_pred             HHHHHHHH-HHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhh
Q 012519          328 SIIVANAM-HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (461)
Q Consensus       328 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (461)
                      ...+..++ +.........+. .+.++..|+++...|.+....+++.+++..+.+++.+|++.|         .++.++.
T Consensus       256 ~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r---------~~l~~~~  325 (468)
T TIGR00788       256 KPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR---------LLFGVTT  325 (468)
T ss_pred             HHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH---------HHHHHHH
Confidence            76665555 222211111111 122345799999999999999999999999998888888766         3334444


Q ss_pred             HHHHHHHHHHh-c---------cChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          407 IAPGIALIGLT-A---------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       407 ~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      ++.+++.+... .         .++.+......++.....++.......++.+..|+ ++|+..|
T Consensus       326 ~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~a  390 (468)
T TIGR00788       326 LLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFA  390 (468)
T ss_pred             HHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHH
Confidence            44444332211 0         12222233334445555666666778888888774 5777654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.82  E-value=2.3e-18  Score=158.16  Aligned_cols=241  Identities=12%  Similarity=0.052  Sum_probs=174.0

Q ss_pred             ccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Q 012519          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ---------------  251 (461)
Q Consensus       187 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------------  251 (461)
                      .+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+.++++|..+||.+++.+...               
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~   87 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE   87 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence            78999999999999999999999999999999999999999999999999999999999988732               


Q ss_pred             -cCchhHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHH
Q 012519          252 -AGIFGPFVIFGLSGFLWVLVWLSA-TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSI  329 (461)
Q Consensus       252 -~gwr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (461)
                       .+|+++|++.+.+.++..+++.+. .||.+++..    ++               ...++.   ...++.+++|.++..
T Consensus        88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~----~~---------------~~~~~~---~~~~~~~~~~~~~l~  145 (310)
T TIGR01272        88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV----AR---------------VSSGDT---TQKTSAFQFTHLVLG  145 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc----cc---------------cccccc---cchhhHHhhHHHHHH
Confidence             469999997777655555444333 222211100    00               000000   112256778889988


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHh--hCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhH
Q 012519          330 IVANAMHSWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (461)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (461)
                      .+..+++.....+...|.+.|+.+.  +|+++.+.+...+....+.++|+++++++.||++++       | .+ .++.+
T Consensus       146 ~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~-------~-~l-~~~~~  216 (310)
T TIGR01272       146 ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG-------R-YL-AFNAF  216 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-------H-HH-HHHHH
Confidence            8888888889999999999999864  689999999999999999999999999999999977       2 22 23333


Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccccccccc
Q 012519          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLH  459 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~  459 (461)
                      +..++.++....+... ....+++.+++.+..+|...+...+..|++.+++.
T Consensus       217 l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~as  267 (310)
T TIGR01272       217 LAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGS  267 (310)
T ss_pred             HHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence            3333333332323322 22334455566666777777777776776555443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.82  E-value=5.7e-18  Score=165.72  Aligned_cols=306  Identities=11%  Similarity=-0.013  Sum_probs=199.9

Q ss_pred             hhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhh----hhcc-hHHHHHHHHHHHHHHHHhhcccc--c--cHHH
Q 012519          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGG-KIIMAWGVALWSLATFLTPWAAD--T--SLLA  191 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~i~~~~~~~~~~--~--~~~~  191 (461)
                      ....+.+.+|++..++|.+..+..+.-++..|+.|.++|    |+|| |+.++++.+..+++.++....+.  +  .++.
T Consensus        29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~  108 (473)
T PRK10429         29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF  108 (473)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence            445566778999999999999999999999999999999    6698 56777788887777666544310  1  1345


Q ss_pred             HHHHHHHHhhhhhchhhHHHHHHHhhc-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCchhHHHHHHH
Q 012519          192 LLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-------AGIFGPFVIFGL  263 (461)
Q Consensus       192 l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~f~~~~~  263 (461)
                      +++..++.+++.........+++.|.. ++++|.+..++-..+.++|..+.+.+...+.+.       .+|+....+.++
T Consensus       109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~  188 (473)
T PRK10429        109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIA  188 (473)
T ss_pred             HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            566677778888888888999999998 588999999997777787766666555443322       246666666666


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 012519          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (461)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (461)
                      +.++..+..++..+|.++.....                  .+.+++......++.+++||.++.+++..++........
T Consensus       189 ~~~~~~~~~~~~~~e~~~~~~~~------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~  250 (473)
T PRK10429        189 FFIVSTIITLRNVHEVYSSDNQV------------------SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNII  250 (473)
T ss_pred             HHHHHHHHHHcCceecCCccccc------------------cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            66665555555555543211000                  000111223345566779999998888888888777777


Q ss_pred             HHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHH---hccC
Q 012519          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL---TAAK  420 (461)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  420 (461)
                      ..+.++|.+...+ +....+.+.....++.+++.++.+++.||+|+|       +...........+......   ....
T Consensus       251 ~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-------~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
T PRK10429        251 NGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRR-------ILWAGASIFPVLSCGVLLLMGLAAPH  322 (473)
T ss_pred             hhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHhccCch
Confidence            7777766665433 444556666666688899999999999999988       2222222211111111111   1122


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc
Q 012519          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP  452 (461)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  452 (461)
                      +.+..++..++.+...+...+..+++.+|..+
T Consensus       323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id  354 (473)
T PRK10429        323 NALLIVIAGILLNIGTALFWVLQVIMVADTVD  354 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33333333344445555566667777877755

>PRK09848 glucuronide transporter; Provisional

Probab=99.81  E-value=1.6e-17  Score=161.76  Aligned_cols=299  Identities=11%  Similarity=0.021  Sum_probs=183.7

Q ss_pred             hhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh----cchHHH-HHHHHHHHHHHHHhhccc---cc--cHH
Q 012519          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY----GGKIIM-AWGVALWSLATFLTPWAA---DT--SLL  190 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~~~~~---~~--~~~  190 (461)
                      ....+.+.+|++..++|.+.+...+..++..++.|+++||.    ||||.. +++.+...+..++....+   .+  ..+
T Consensus        31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            34567777899999999999999999999999999999996    777644 555554544444321111   01  233


Q ss_pred             HHHHHHHHHhhhhhchhhHHHHHHHhhcC-chhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhhc--CchhHHHHHH
Q 012519          191 ALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFT-----SGNAIGLVLSPILMSQA--GIFGPFVIFG  262 (461)
Q Consensus       191 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~G~~~g~~~~~~l~~~~--gwr~~f~~~~  262 (461)
                      .+++..++.+++.+...+...++..+..+ +++|.+..++-..+.+     +|..++|.+++......  +|.....+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~  190 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLA  190 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            34555667788888888878888777664 4678887776654433     44555555554321111  1211112223


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHH
Q 012519          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (461)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (461)
                      +++++..+......||+++.+.                        ++......++.++|||.++...+..++.......
T Consensus       191 v~~~~~~~~~~~~~~e~~~~~~------------------------~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~  246 (448)
T PRK09848        191 IAGMVLYFICFKSTRENVVRIV------------------------AQPSLKISLQTLKRNRPLFMLCIGALCVLISTFA  246 (448)
T ss_pred             HHHHHHHHHHHcCcEeccCCCc------------------------cCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            3333333333333333321110                        1112234577899999999999988888888888


Q ss_pred             HHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhcc--C
Q 012519          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA--K  420 (461)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  420 (461)
                      ...+.|.|+++.+|.+....++......++.+++.++.+++.||+++|       +  .+.++.++..++.+.+...  .
T Consensus       247 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-------~--~~~~g~~~~~i~~~~~~~~~~~  317 (448)
T PRK09848        247 VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-------N--TFLIGALLGTCGYLLFFWVSVW  317 (448)
T ss_pred             HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-------H--HHHHHHHHHHHHHHHHHHcCch
Confidence            888888899888887766555544444566788889999999999987       2  2233333333333333232  2


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhchhHhhhhhcc
Q 012519          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP  452 (461)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  452 (461)
                      +.+......++...+.+...+...+...+..+
T Consensus       318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~  349 (448)
T PRK09848        318 SLPVALVALAIASIGQGVTMTVMWALEADTVE  349 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33333333444445555666666777777665

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.79  E-value=1.1e-16  Score=148.45  Aligned_cols=322  Identities=16%  Similarity=0.090  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHHhhhHhhhhhhhh-hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH--HHH-HHH
Q 012519          105 ALALALCNADRVVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW--SLA-TFL  180 (461)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~--~i~-~~~  180 (461)
                      .+.++..++.....-+..+...+ ..|++.+++|.+.++..+...+.+++.|.++||+|.||-++....+.  ..+ .+.
T Consensus        13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~   92 (412)
T PF01306_consen   13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFI   92 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            34444444545566666666555 48999999999999999999999999999999999666544333222  222 222


Q ss_pred             hhccc--cccH-HHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 012519          181 TPWAA--DTSL-LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (461)
Q Consensus       181 ~~~~~--~~~~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~  257 (461)
                      ..+.+  ..|+ ...+++-+..|++.....++.-+++.++.  ++.+.-.|-.-+..++|.+++..++|.+.+. +-+..
T Consensus        93 ~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~  169 (412)
T PF01306_consen   93 YVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNII  169 (412)
T ss_dssp             HTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHH
Confidence            22220  0233 23344445556666666677777776664  5567777888889999999999999999873 55778


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHH
Q 012519          258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (461)
Q Consensus       258 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (461)
                      ||+....+++..++.++..|+.+++....+.+                ..++++...++..+++|+|++|.+.+......
T Consensus       170 fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~  233 (412)
T PF01306_consen  170 FWIASAAAIILLLLLLLLKPDVPPQAEVADAL----------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVA  233 (412)
T ss_dssp             HHHHHHHHHHHHHHHHSS---SSSSS-SSTTS----------------SS------HHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcCchhhhhhccc----------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHH
Confidence            88777666666555555554444332111000                11112223345678999999999998888888


Q ss_pred             HHHHHHHHhHHHHHHHhhC---CCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHH
Q 012519          338 WGFFVILSWMPIYFNFVYH---IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (461)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (461)
                      ..+..+....+.|....+.   .+....|++.++.-+..++.-.+.+++.+|+|.|         ..+.++..++.+=..
T Consensus       234 ~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k---------~~Lllag~i~~iRi~  304 (412)
T PF01306_consen  234 AIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK---------NLLLLAGVIMAIRII  304 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH---------hHHHHHHHHHHHHHH
Confidence            8888888888888876432   3345577888888888888889999999999988         344455566777777


Q ss_pred             HHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccc
Q 012519          415 GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQY  454 (461)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  454 (461)
                      +....++.+.....-.+-..-..+......-+..+..|++
T Consensus       305 ~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r  344 (412)
T PF01306_consen  305 GSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR  344 (412)
T ss_dssp             HHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence            7777788776666666666666666666777777777654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=4.1e-18  Score=165.88  Aligned_cols=292  Identities=16%  Similarity=0.149  Sum_probs=230.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  178 (461)
                      ..+.++++..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|+++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            45566677777777777778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccc-------------------c----------------------------cc--HH-HHHHHHHHHhhhhhchhh
Q 012519          179 FLTPWAA-------------------D----------------------------TS--LL-ALLAMRAVVGLAEGVALP  208 (461)
Q Consensus       179 ~~~~~~~-------------------~----------------------------~~--~~-~l~~~r~l~G~~~g~~~~  208 (461)
                      +++++-+                   .                            .+  +| .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            9876430                   0                            00  33 567789999999999999


Q ss_pred             HHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------C-chhHHHHHHHHHHHHH
Q 012519          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA------------------G-IFGPFVIFGLSGFLWV  269 (461)
Q Consensus       209 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------------------g-wr~~f~~~~~~~~~~~  269 (461)
                      ...+|+-|...+++-+..+|+......+|.++|-++++++...+                  | |..-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999986522                  2 6777888888888888


Q ss_pred             HHHHHhcCCCCCCCCCcchhHHHHHHHhhc-CccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHH
Q 012519          270 LVWLSATSSTPDRHPQISKYELEYILREKQ-KPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMP  348 (461)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (461)
                      +..+++.++.|+..++.+..+.+....+.. ........+.-+.....++++++||.+....+...+....+.++.+|+|
T Consensus       337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP  416 (735)
T KOG3626|consen  337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP  416 (735)
T ss_pred             HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence            888888766666554322221111111110 0000000011123345678899999999999999999999999999999


Q ss_pred             HHHHHhhCCCccccchhhhhhHHH-HHHHHHHHHHhhhhHhhc
Q 012519          349 IYFNFVYHIDLRQASWFSAVPWSV-MAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       349 ~~~~~~~g~s~~~~~~~~~~~~~~-~~i~~~~~g~l~dr~~~~  390 (461)
                      -|++..||.++..+..++....+. ..+|.+++|++.+|+.-+
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            999999999999999988776664 477889999999998765

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.79  E-value=1.1e-15  Score=147.10  Aligned_cols=305  Identities=19%  Similarity=0.103  Sum_probs=219.8

Q ss_pred             hhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHH-HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHH
Q 012519          134 SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM-AWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN  212 (461)
Q Consensus       134 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  212 (461)
                      +..++..++..+..++..|+.|.++|+-|+||.+ .+..++..+++++..+....+++...+.-++.-++.+......++
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4457888999999999999999999999877644 445555555666666653355666666667777788888999999


Q ss_pred             HHHhhcCchhh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCchhHH
Q 012519          213 MVARWFPQTER--------------------------ARAVAIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPF  258 (461)
Q Consensus       213 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~gwr~~f  258 (461)
                      ++.|..+++++                          ++..+.-.....+|.++.-.+.-.+...        .+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999998888                          8999998888889988877776655432        2248888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCc-chhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHH
Q 012519          259 VIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (461)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (461)
                      .+.++.-++..+..++..|+.|+.++.. ...-.....               ++....++++.|.|.+...++..+++.
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~---------------~~l~~t~k~~~~~~~~~~fLia~~l~~  294 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF---------------KRLWRTFKEIRKLRQLFLFLIAYFLYS  294 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH---------------HHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            8888888888888888888877632111 111111000               112235667778899999999999999


Q ss_pred             HHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHH-HHHHHHH
Q 012519          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP-GIALIGL  416 (461)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  416 (461)
                      -+...+......|.++.+|++..+...+..+..+.+++|+++.|++.||+|.|.       +..+...++.. .+.+...
T Consensus       295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~-------~~~l~~~l~~~~~i~~~g~  367 (477)
T PF11700_consen  295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT-------KRTLLISLILWIIIPLYGL  367 (477)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-------hHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999882       22222222222 2222222


Q ss_pred             h-------ccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          417 T-------AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       417 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      .       ..++.+..+++.++.+.+.|...+..-++..++.|+ +.+..+|
T Consensus       368 ~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFg  419 (477)
T PF11700_consen  368 FGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFG  419 (477)
T ss_pred             HHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHH
Confidence            1       134455555566667777777777778888888885 4554433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11462 putative transporter; Provisional

Probab=99.78  E-value=5.2e-16  Score=150.87  Aligned_cols=245  Identities=14%  Similarity=0.076  Sum_probs=177.7

Q ss_pred             hhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh----hcchH-HHHHHHHHHHHHHHHhhcccccc----HHH
Q 012519          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAADTS----LLA  191 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~~~----~~~  191 (461)
                      ....+.+.+|+++..+|.+..+.-+--++..|+.|.++||    +|||| .++++.+..+++.+++...+..+    +..
T Consensus        32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y  111 (460)
T PRK11462         32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY  111 (460)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            4455667889999999999999999999999999999995    78765 55567777777776655442111    445


Q ss_pred             HHHHHHHHhhhhhchhhHHHHHHHhhcC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CchhHHHHHHH
Q 012519          192 LLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIFGL  263 (461)
Q Consensus       192 l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------gwr~~f~~~~~  263 (461)
                      +++.-++..++.......-.++..|..+ +++|.+..++...+..+|..+++.+...+.+..       +|+....+.++
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i  191 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV  191 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            6666777788888888888999999986 788999999999999999888887766555443       47777777777


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 012519          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (461)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (461)
                      +.+++.++.+...+|+++..+                        ++......++..++||.++.++...++........
T Consensus       192 i~~i~~~i~~~~~kE~~~~~~------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~  247 (460)
T PRK11462        192 VAFMMLAFCFFTTKERVEAPP------------------------TTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVR  247 (460)
T ss_pred             HHHHHHHHHHhcceeccCCCc------------------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            766666555555555432110                        01112345678889998888777766666665555


Q ss_pred             HHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      .....+|.+...|. +...+.+.....++++++.++++++.||+++|
T Consensus       248 ~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk  293 (460)
T PRK11462        248 GGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV  293 (460)
T ss_pred             HhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            55555555554443 23344566677788889999999999999887

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.77  E-value=4.3e-16  Score=145.78  Aligned_cols=304  Identities=16%  Similarity=0.125  Sum_probs=232.3

Q ss_pred             hhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh----hcchH-HHHHHHHHHHHHHHHhhcccc----ccHHH
Q 012519          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAAD----TSLLA  191 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~----~~~~~  191 (461)
                      ++-.+.+.+|+++..+|.+..+.-+--++..|+.|.++||    +||+| .++.+.+..++.+.++-.+++    .+...
T Consensus        35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y  114 (467)
T COG2211          35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY  114 (467)
T ss_pred             HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence            3445667789999999999999999999999999999995    78654 677787888888888877731    34566


Q ss_pred             HHHHHHHHhhhhhchhhHHHHHHHhhcC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCchhHHHHHHH
Q 012519          192 LLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIFGL  263 (461)
Q Consensus       192 l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~gwr~~f~~~~~  263 (461)
                      .++...+.+++.........++.+|..+ ++||.+..++-+.+.++|..+...+...+..       ..||+...++.++
T Consensus       115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~v  194 (467)
T COG2211         115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGV  194 (467)
T ss_pred             HHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHH
Confidence            7778889999999999999999999884 7899999999999999998777776666654       3478888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 012519          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (461)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (461)
                      ++++..+++++-.+|++.+....                   +...+.+....+..+++||++...++..++...+....
T Consensus       195 i~~i~~l~~~~~v~ER~~~~~~~-------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~  255 (467)
T COG2211         195 IGVILLLFCFFNVKERVVETQPT-------------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIR  255 (467)
T ss_pred             HHHHHHHHHHHHhhcccCccccC-------------------cccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            88888888888877776532210                   11122223344557889999999999888888888888


Q ss_pred             HHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhc--cCh
Q 012519          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA--AKS  421 (461)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  421 (461)
                      .....+|.+...|.+.............+.+++.++..++.+|+|+|       +  +...+.++..++.+++.+  .++
T Consensus       256 ~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-------~--~~~~~~~~~~i~~~~~~f~~~~~  326 (467)
T COG2211         256 GSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-------K--LFLIGLLLLAVGYLLLYFTPAGS  326 (467)
T ss_pred             hhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-------H--HHHHHHHHHHHHHHHHHhhcCcc
Confidence            88889999888888887887787777778888899999999999998       2  333333333333333333  334


Q ss_pred             hHHHHHHHHHHHHHHhhhhhchhHhhhhhcc
Q 012519          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP  452 (461)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  452 (461)
                      ....+++.++...+.+...+..+++++|+..
T Consensus       327 ~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD  357 (467)
T COG2211         327 VVLIVVALIIAGVGTGIANPLPWAMVADTVD  357 (467)
T ss_pred             hHHHHHHHHHHHHHhhccccccHHHhcchhh
Confidence            5555556677788888888999999988764

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.75  E-value=1.3e-19  Score=176.70  Aligned_cols=288  Identities=16%  Similarity=0.159  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh
Q 012519          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (461)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  182 (461)
                      .+++..++...........+..+.++|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.++++++++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            33444444566666777889999999999999999999999999999999999999998888899999999999998876


Q ss_pred             ccc-----------c-------------------------------------ccHHHHHHHHHHHhhhhhchhhHHHHHH
Q 012519          183 WAA-----------D-------------------------------------TSLLALLAMRAVVGLAEGVALPAMNNMV  214 (461)
Q Consensus       183 ~~~-----------~-------------------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i  214 (461)
                      +-+           .                                     .-++.++++.++.|+|....++...+|+
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            420           0                                     0145688899999999999999999999


Q ss_pred             HhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------C-chhHHHHHHHHHHHHHHHH
Q 012519          215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA---------------------G-IFGPFVIFGLSGFLWVLVW  272 (461)
Q Consensus       215 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---------------------g-wr~~f~~~~~~~~~~~~~~  272 (461)
                      -|..++++-+..+|+..+...+|.++|-++++.+.+.+                     | |-.-|++.+.+.++..+..
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998775421                     2 6666777777777777777


Q ss_pred             HHhcCCCCCCCCCcchhHHHHHHHh--hcCccccC-----CCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Q 012519          273 LSATSSTPDRHPQISKYELEYILRE--KQKPLLMG-----NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILS  345 (461)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (461)
                      +.+.++-|+..+..+..+.++..+.  ..+.....     .....+.....++++++||.+....+......+...++.+
T Consensus       247 ~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~t  326 (539)
T PF03137_consen  247 FFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFAT  326 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            7776555554211111111100000  00000000     0122344556778999999999999999999999999999


Q ss_pred             hHHHHHHHhhCCCccccchhhhhhHH-HHHHHHHHHHHhhhhHhhc
Q 012519          346 WMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       346 ~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~  390 (461)
                      ++|.|++..++.++.+++++.....+ ++++|.+++|++.+|++-+
T Consensus       327 F~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~  372 (539)
T PF03137_consen  327 FLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS  372 (539)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence            99999999999999999998877666 5578889999999998755

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.73  E-value=2.4e-15  Score=139.53  Aligned_cols=347  Identities=14%  Similarity=0.132  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHHHhhh-HhhhhhhhhhcC----CCchhHHHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHHHHHHHHHHH
Q 012519          104 LALALALCNADRVVM-SVAIVPLSLAHG----WSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLA  177 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~  177 (461)
                      +....+..-+..+-+ .+..-++..+++    ++++++.-+.+.|..-.-+...++|+++|| +|+|++++.|.++..+|
T Consensus        26 if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iG  105 (498)
T COG3104          26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIG  105 (498)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            334444444433333 333444555555    999999999999988888999999999999 59999999999999999


Q ss_pred             HHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 012519          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (461)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr  255 (461)
                      .++.+.........++++-++.++|.|..-+...++++|.+|++  +|-..++++..+.++|..++|++.+++.+++||.
T Consensus       106 h~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~  185 (498)
T COG3104         106 HLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWH  185 (498)
T ss_pred             HHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHH
Confidence            99988871126888999999999999999999999999999865  4788899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCcchhHHHHH---------HH----hh-cCc---------------
Q 012519          256 GPFVIFGLSGFLWVLVWLSATSSTPD-----RHPQISKYELEYI---------LR----EK-QKP---------------  301 (461)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---------~~----~~-~~~---------------  301 (461)
                      ..|...++-..+.++..+...+.-..     +.......+....         ..    .. .+.               
T Consensus       186 ~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~  265 (498)
T COG3104         186 VGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAII  265 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888887776666555422111     0000000000000         00    00 000               


Q ss_pred             cccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCC----ccccchhhhhhHHHHHHHH
Q 012519          302 LLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHID----LRQASWFSAVPWSVMAFTG  377 (461)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s----~~~~~~~~~~~~~~~~i~~  377 (461)
                      ...+..+.++.. ..-++++   ....+.+...+++..+....+.+..|..+..+.+    ....+++.+...+.-++..
T Consensus       266 ~~~~~~~~~~~~-~er~r~~---~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~  341 (498)
T COG3104         266 YFAEAFRSPKVF-DERRRLL---AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFS  341 (498)
T ss_pred             HHHHHhccCccH-HHHHHHH---HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHH
Confidence            000000001000 1111111   1222233333333333333444445544432222    1345677788888888888


Q ss_pred             HHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHh---cc-----ChhHHHHHHHHHHHHHHhhhhhchhHhhhh
Q 012519          378 YLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT---AA-----KSPVMASAWLTLAIGMKSFSHSGFLVNLQE  449 (461)
Q Consensus       378 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (461)
                      ++..++..|.++++.......|.-+...+..++...+...   ..     .+.++.+...++..+..-+..+.-..++..
T Consensus       342 pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~  421 (498)
T COG3104         342 PILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTK  421 (498)
T ss_pred             HHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            8888998887776554444444443333333333333222   11     134455555556666666777777788888


Q ss_pred             hcccc
Q 012519          450 IAPQY  454 (461)
Q Consensus       450 ~~p~~  454 (461)
                      +.|+.
T Consensus       422 laP~~  426 (498)
T COG3104         422 LAPPA  426 (498)
T ss_pred             hChHH
Confidence            87753

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.72  E-value=1.1e-14  Score=130.56  Aligned_cols=245  Identities=15%  Similarity=0.093  Sum_probs=176.0

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (461)
                      ..+|..-.+.+++|.+..|++.+........++..++.|.++||+|||+.-++-+++.+++++.- ..  ++++.++++|
T Consensus        52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~--~~~~~L~~GR  128 (354)
T PF05631_consen   52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HS--SNYPVLLLGR  128 (354)
T ss_pred             hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hc--cccHHHHHHH
Confidence            44444445567899999999999999999999999999999999999999999999999998753 44  8999999999


Q ss_pred             HHHhhhhhchhhHHHHHH-Hhh----cCchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCc--hhHHHHHHHHHHHH
Q 012519          197 AVVGLAEGVALPAMNNMV-ARW----FPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGI--FGPFVIFGLSGFLW  268 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gw--r~~f~~~~~~~~~~  268 (461)
                      ++.|++......+--++. .|.    +|++..+..++... ...++-.+++.+++..+.+..+.  ..+|.....+.++.
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            999999999988888775 443    23333444444443 23344456666667777776654  78898888888777


Q ss_pred             HHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHH
Q 012519          269 VLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMP  348 (461)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (461)
                      .+++...-+|+..+..+..+                    ..+.....++.++++|+++.+.++..+.-...+.+....+
T Consensus       209 ~~~I~~~W~ENyg~~~~~~~--------------------~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWt  268 (354)
T PF05631_consen  209 AVLILKTWPENYGDTSSSSS--------------------LSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWT  268 (354)
T ss_pred             HHHHHhcccccCCCcccccc--------------------hHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeee
Confidence            77666555555433211100                    0111123456778899999999999998888887764444


Q ss_pred             HHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhh
Q 012519          349 IYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM  386 (461)
Q Consensus       349 ~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr  386 (461)
                      .-++.  +-....-|++++.+.++.++|+.+..++..+
T Consensus       269 PaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  269 PALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             ceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44442  2233457899999999999999888765543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.71  E-value=6.1e-16  Score=148.76  Aligned_cols=161  Identities=14%  Similarity=0.078  Sum_probs=135.2

Q ss_pred             hhhhhhhhhcCCC--------chhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcccc--ccH
Q 012519          120 VAIVPLSLAHGWS--------RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD--TSL  189 (461)
Q Consensus       120 ~~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~  189 (461)
                      ...+...++.+.+        ....+.+.++..++..++.++.|+++||+|+|+++.++.++.+++..+......  .++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            3345555555544        366799999999999999999999999999999999999999888776665310  134


Q ss_pred             HHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhh------cCchhHHHHHH
Q 012519          190 LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQ------AGIFGPFVIFG  262 (461)
Q Consensus       190 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~------~gwr~~f~~~~  262 (461)
                      +.+++.+++.|++.+...+....++.|++|+++|++++++.+ ....+|..+||+++|.+.++      +||+..|++.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            677888999999999888999999999999999999999997 67889999999999999987      46999999999


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 012519          263 LSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~  280 (461)
                      ++.++..++.+++.+|+.
T Consensus       389 ~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHHHhCCcc
Confidence            998888888888877653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.70  E-value=1.9e-16  Score=128.03  Aligned_cols=137  Identities=21%  Similarity=0.366  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcC
Q 012519          140 QSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP  219 (461)
Q Consensus       140 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  219 (461)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.  ++++.+.+.+++.|++.+...+....++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            455678889999999999999999999999999999999988888  899999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCC
Q 012519          220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSS  278 (461)
Q Consensus       220 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  278 (461)
                      +++|+++.++......+|..+++.+++.+.+..+|++.|++.+.+.++..+..++..||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999999999999888887777766666543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.69  E-value=2.8e-14  Score=130.01  Aligned_cols=307  Identities=15%  Similarity=0.110  Sum_probs=210.1

Q ss_pred             hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhc-----chH-HHHHHHHHHHHHHHHhhcc----cc-------c
Q 012519          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKI-IMAWGVALWSLATFLTPWA----AD-------T  187 (461)
Q Consensus       125 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~-~~~~~~~~~~i~~~~~~~~----~~-------~  187 (461)
                      +..|++++..-.+.+.++..+... ..+.+|..+|+.+     ||. .+..|.+....+..+..++    ..       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            567899999999999998888775 5889999999988     775 4455666666655544333    11       1


Q ss_pred             c-HH--HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH---H
Q 012519          188 S-LL--ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI---F  261 (461)
Q Consensus       188 ~-~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~---~  261 (461)
                      . .+  ...+...+.|+|.+.......++++|..|+++|+++.++...+.-+|.+++..+.+.+.+.+.-.-..-+   .
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            2 22  2344567889999999999999999999999999999999999999999999999999887663222222   2


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (461)
                      +++.++..++..+- .|++..+..                  ...++++......++++..+|+...+.+..++...+++
T Consensus       165 a~i~~~l~~ia~wg-~E~r~~~~~------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~  225 (403)
T PF03209_consen  165 ALIALLLNLIALWG-QEPRRSRRA------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFF  225 (403)
T ss_pred             HHHHHHHHHHHHHh-cccCCcccc------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            22332222222222 222221111                  01222333344567788889998888888888888888


Q ss_pred             HHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhh-HhhcCcchhhhHHHHHHHhhHHHHHHHH---HHh
Q 012519          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQSIGFIAPGIALI---GLT  417 (461)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  417 (461)
                      .-...+-.|--+++|+++.+...+......+.+++-.+.|++..| .+++       +  ....++.....++.   ...
T Consensus       226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-------~--~a~~G~~~~~~~f~lii~a~  296 (403)
T PF03209_consen  226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-------R--TAALGCLLGALAFALIILAG  296 (403)
T ss_pred             hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-------H--HHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999999999987764 3333       1  22223232222222   233


Q ss_pred             ccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhc-ccccccccC
Q 012519          418 AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHG  460 (461)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~g  460 (461)
                      ...+.+......++.+...|.+.........+.. +++.|..+|
T Consensus       297 ~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG  340 (403)
T PF03209_consen  297 PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMG  340 (403)
T ss_pred             hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHH
Confidence            3445555666666666667777666666666666 466776655

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.67  E-value=2.6e-14  Score=129.76  Aligned_cols=305  Identities=14%  Similarity=0.089  Sum_probs=213.8

Q ss_pred             CchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchH-HHHHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHhhhhhchhhH
Q 012519          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI-IMAWGVALWSLATFLTPWAAD-TSLLALLAMRAVVGLAEGVALPA  209 (461)
Q Consensus       132 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~  209 (461)
                      +.+..+...++..+..++.+|+.|.++|+.|+|| .+-....+..++.++..+++. ++++..++.-.+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            3456788889999999999999999999999665 555566666666777777743 34556666788889999999999


Q ss_pred             HHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH---H---------------hhcCchhHHHHHHHHHHHHHHH
Q 012519          210 MNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL---M---------------SQAGIFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       210 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l---~---------------~~~gwr~~f~~~~~~~~~~~~~  271 (461)
                      ..+++.+..++++-++..++-.....+|..+.-++.-..   .               +...-|..+.+.++.-++..+.
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            999999999988888887777776777766554443111   1               2224688899999988888888


Q ss_pred             HHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012519          272 WLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF  351 (461)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (461)
                      .++..++.++...... .   ...+.            -++....++++.+++++..++++.+++.=+..++......|.
T Consensus       216 m~~~v~~~~~~~~~~~-~---~l~~g------------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg  279 (438)
T COG2270         216 MILNVHDAEKISSPPP-T---ALRNG------------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFG  279 (438)
T ss_pred             HHhcccccccccccch-H---HHHHH------------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            8888777664321100 0   00000            011234677888889999999999999999999999999999


Q ss_pred             HHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHH
Q 012519          352 NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTL  431 (461)
Q Consensus       352 ~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (461)
                      ...+|++..+...+.....+.+++|+++.|++.||++.|+         ++..+++...+..+...+.......+.+.++
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~---------vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll  350 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKP---------VLMIGLVILSIAALYLIFLEGELDFWILGLL  350 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCce---------eehHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            9889999999999999999999999999999999999882         2222322222222222223333333333344


Q ss_pred             HHHHHhhhhhchhHhhhhhcc-cccccccCC
Q 012519          432 AIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI  461 (461)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~p-~~~g~~~gl  461 (461)
                      .+...|-.....-++..+..| ++.++.+|+
T Consensus       351 ~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgl  381 (438)
T COG2270         351 VGTSLGGAQASSRSYLARLVPKGKEGRFFGL  381 (438)
T ss_pred             HHHhcchHHHHHHHHHHHhCCCccccceeeh
Confidence            444444445555666677776 456666653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.67  E-value=1.3e-14  Score=139.46  Aligned_cols=157  Identities=18%  Similarity=0.173  Sum_probs=133.7

Q ss_pred             hhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh
Q 012519          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (461)
                      ..+.+.++.+.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.  ++.+.+++..++.|
T Consensus       238 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G  313 (399)
T PRK05122        238 FITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--PSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHH
Confidence            34444455555  345677788899999999999999999999999999999888888888887  88888888999999


Q ss_pred             hhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       201 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      ++.+...+.....+.|.+|+++|+++.++++....+|..+++++.+.+.++.||++.|++.+++.++..+..++..++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99998888888888999999999999999999999999999999999999999999999988888877766666655444


Q ss_pred             C
Q 012519          281 D  281 (461)
Q Consensus       281 ~  281 (461)
                      +
T Consensus       394 ~  394 (399)
T PRK05122        394 R  394 (399)
T ss_pred             c
Confidence            3

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.67  E-value=1.1e-14  Score=138.64  Aligned_cols=339  Identities=18%  Similarity=0.154  Sum_probs=225.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCc-hhHHHHHHH----HHHHHHHhHhhhhhhhhhhcchHHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSR-SFSGIVQSS----FLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~~~~s~----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  173 (461)
                      .......+-.+..++.........+...+.++.+. ...+.....    ..+...+.++..|.++||+|||..+.+.+..
T Consensus        22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            34444555555555555455555566555554322 222333333    3678888999999999999999999999999


Q ss_pred             HHHHHHHhhccccccHHHHHHHHHHHhhhh--hchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012519          174 WSLATFLTPWAADTSLLALLAMRAVVGLAE--GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (461)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~--g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  251 (461)
                      ..+..+...+.  . +|.++    +.|+..  +.....+.++++|....++|....|+.+.....+..++|.+++.+...
T Consensus       102 ~~l~~~~~~~~--~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~  174 (463)
T KOG2816|consen  102 TILPALCLLFQ--G-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF  174 (463)
T ss_pred             HHHhHHHHHHH--H-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            99998888776  4 44444    444432  356778899999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHH
Q 012519          252 AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIV  331 (461)
Q Consensus       252 ~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (461)
                      .|.-..|.+..+..++..+..++..||+..+......+..+    ....   .....+........+..-.+|..+.+++
T Consensus       175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~r~~l~l~l  247 (463)
T KOG2816|consen  175 LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE----LTPG---SLDSSHVADAFQSLTKVGPDRLLLLLLL  247 (463)
T ss_pred             cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc----cCCC---cccchhhhhhhhhhcccCCCccchHHHH
Confidence            99999999999999999998888888876544332100000    0000   0000001111111112223455555555


Q ss_pred             HHHHHHHHHHHHHH-hHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHH-HhhhhHhhcCcchhhhHHHHHHHhhHHH
Q 012519          332 ANAMHSWGFFVILS-WMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG-LLSDMLIQRGTSVTLTRKILQSIGFIAP  409 (461)
Q Consensus       332 ~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~  409 (461)
                      ..++.......-.. ..+.|+...++++..+.+.+.+.......++.++.. .+...++.+         .++..++..-
T Consensus       248 ~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~---------~~i~lGl~~~  318 (463)
T KOG2816|consen  248 VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK---------RLISLGLLSE  318 (463)
T ss_pred             HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHhhHHHHHH
Confidence            55554444433222 457788888999999999999999999999997776 677777776         3666777777


Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhc-ccccccccCC
Q 012519          410 GIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGI  461 (461)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~gl  461 (461)
                      .+..+...+....|..+....+.. +.....+..-+...... ++++|.+.++
T Consensus       319 ~~~~~~~af~~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e~g~v~~~  370 (463)
T KOG2816|consen  319 FLQLLLFAFATETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEEQGKVFGI  370 (463)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHH-hhcchhHHHHhHHHhhcccccccchhhH
Confidence            777777777776665554443333 33344444455555444 5778887763

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.66  E-value=3.2e-15  Score=142.34  Aligned_cols=149  Identities=15%  Similarity=0.077  Sum_probs=128.8

Q ss_pred             hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Q 012519          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (461)
Q Consensus       120 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~  199 (461)
                      ...+.+.++++.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..++.++..+.+..+...+++..++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            34455667889999999999999999999999999999999999999999999998888877776212333455667888


Q ss_pred             hhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 012519          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (461)
Q Consensus       200 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  268 (461)
                      |++.+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.++.||++.|++.+++.++.
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            988888888888899999999999999999999999999999999999999999999999988776654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.66  E-value=1.7e-14  Score=135.40  Aligned_cols=256  Identities=14%  Similarity=0.150  Sum_probs=184.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhh--cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcc-hHHHHHHHH
Q 012519           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVA  172 (461)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~  172 (461)
                      .+|+.+.++.+..++.......+.+..-++.++  .+.+.+..|++.++..++.+++++++|+...|.+. |+.++.+.+
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i  110 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL  110 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence            356777788888888888777777766555555  77788999999999999999999999999999986 888999999


Q ss_pred             HHHHHHHHh-hcc--ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          173 LWSLATFLT-PWA--ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (461)
Q Consensus       173 ~~~i~~~~~-~~~--~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~  249 (461)
                      +..++.++. ++.  +....+.++++|++.|+|.| .....-+|+++....++|.++++....+..+|.++||.++..+.
T Consensus       111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            999999987 433  22368899999999999977 56778999999888899999999999999999999999888775


Q ss_pred             hh--cC-----------chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChh
Q 012519          250 SQ--AG-----------IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP  316 (461)
Q Consensus       250 ~~--~g-----------wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (461)
                      .-  .|           +..+-|+.+++.++..+...++.+|.+++......++.++    .+     .+.++.+..+.+
T Consensus       190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~d  260 (488)
T KOG2325|consen  190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE----EK-----SDIEKVKKPKLD  260 (488)
T ss_pred             hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh----hc-----cchhhhccCChh
Confidence            41  12           2346678888888877777777777665442221111100    00     000001111111


Q ss_pred             HHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhh
Q 012519          317 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA  367 (461)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  367 (461)
                      +      +..+.+.+..+...+.+....+..+.+....++++..++....+
T Consensus       261 ~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~g  305 (488)
T KOG2325|consen  261 W------VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNG  305 (488)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhh
Confidence            1      22445666666667777777777777777778887766544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.66  E-value=2.2e-15  Score=145.66  Aligned_cols=152  Identities=13%  Similarity=0.091  Sum_probs=133.4

Q ss_pred             hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhch
Q 012519          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVA  206 (461)
Q Consensus       127 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~  206 (461)
                      .+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++  ++.+.+++.+++.|++.+..
T Consensus       255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~  332 (420)
T PRK09528        255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA--TGPLEVSILKLLHAFEVPFL  332 (420)
T ss_pred             hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHH
Confidence            3346677889999999999999999999999999999999999999999998888888  89999999999999998888


Q ss_pred             hhHHHHHHHhhcCchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          207 LPAMNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       207 ~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      .+....++.|.+|++.|+...+. ++....+|..+++.+.|++.+..||+..|.+.+++.++..++.++..++++
T Consensus       333 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        333 LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            88888999999999988887665 677888999999999999999999999999988888777666666655544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.65  E-value=3.3e-14  Score=139.97  Aligned_cols=163  Identities=13%  Similarity=0.123  Sum_probs=124.5

Q ss_pred             hhHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH---hhccccccHHHH
Q 012519          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL---TPWAADTSLLAL  192 (461)
Q Consensus       117 ~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~~~l  192 (461)
                      .....+|.+. +++|.+..+.++..+...++..++.++.|+++||+|||++++++.++..++.+.   ...+  ++...+
T Consensus       268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  345 (490)
T PRK10642        268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS--NVIGLI  345 (490)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHH
Confidence            3444556544 567888888888888899999999999999999999999988887654433322   2223  567888


Q ss_pred             HHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHH
Q 012519          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       193 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~  271 (461)
                      ++++++.|++.+........++.|.+|++.|++++++......++..++|.+.+++.+..+ |+.++++..+++++.++.
T Consensus       346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~  425 (490)
T PRK10642        346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT  425 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            8899999988877777888889999999999999998555556667889999998887654 787777766666665555


Q ss_pred             HHHhcCCCCCC
Q 012519          272 WLSATSSTPDR  282 (461)
Q Consensus       272 ~~~~~~~~~~~  282 (461)
                      .+ +.||+|+.
T Consensus       426 ~~-~~pes~~~  435 (490)
T PRK10642        426 GV-TMKETANR  435 (490)
T ss_pred             HH-HhccccCC
Confidence            44 44787764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.64  E-value=1.9e-14  Score=138.58  Aligned_cols=157  Identities=19%  Similarity=0.133  Sum_probs=132.3

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (461)
                      ......|.+.++.|.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.+...++.++..+.  ++.+.+.+..
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  315 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--PSFAGMLLAG  315 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence            33445677778889999999999999999999999999999999999999988877777777777777  7888888888


Q ss_pred             HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHh
Q 012519          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      ++.|++.+...+...+++.|.+|+++|++++|+.+....+|..+||.+++.+.++.+ |...++..+...++..++.++.
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            899998888888999999999999999999999999999999999999999988754 5666666665555555555544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.64  E-value=2.2e-14  Score=144.51  Aligned_cols=140  Identities=17%  Similarity=0.166  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHh
Q 012519          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR  216 (461)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  216 (461)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.  ++.+.+++++++.|++.+..++...++++|
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567778999999999999999999999999999999999999888  888888888999999888889999999999


Q ss_pred             hcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          217 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       217 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      ++|.++|++++|+..+...+|.++||++++.+.+. +...+|++.+++.++.+++.+++ ||+.
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET~  737 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL-PDTR  737 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCCc
Confidence            99999999999999999999999999999988764 45677888777777766655544 6543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.64  E-value=3.9e-14  Score=135.07  Aligned_cols=154  Identities=12%  Similarity=0.018  Sum_probs=136.4

Q ss_pred             HhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHH
Q 012519          115 RVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (461)
Q Consensus       115 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~  194 (461)
                      ...+....|.+.+++|.+..++|++.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++  ++.+.+++
T Consensus       221 ~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~  298 (382)
T TIGR00902       221 HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI--EAFPLIFL  298 (382)
T ss_pred             HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHH
Confidence            3344445566667899999999999999999999999999999999999999999999999999999988  99999999


Q ss_pred             HHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 012519          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW  272 (461)
Q Consensus       195 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  272 (461)
                      .+++.|+..+...+....++.+. |+++|++..++++ ...++|..+|+.++|.+.+++|+ ..|++.++++++..++.
T Consensus       299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998 9999999999986 57889999999999999999996 67888887777654443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.63  E-value=2.9e-14  Score=136.47  Aligned_cols=153  Identities=11%  Similarity=0.014  Sum_probs=128.0

Q ss_pred             hhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHH
Q 012519          120 VAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAV  198 (461)
Q Consensus       120 ~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l  198 (461)
                      ...|. +.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......+.  ++.+.+++.+++
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l  314 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--HSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHH
Confidence            34554 456789999999999888888888899999999999999998888777666655555556  788888889999


Q ss_pred             HhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       199 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      .+++.|...+....+..|..| ++|++++++++....+|..+|+.+++.+.++.||+..|++.+++.++..+..++.
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            998888777788888899997 5699999999999999999999999999999999999998888777766655544

>PRK12382 putative transporter; Provisional

Probab=99.62  E-value=5.2e-14  Score=134.87  Aligned_cols=153  Identities=18%  Similarity=0.216  Sum_probs=131.9

Q ss_pred             hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Q 012519          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (461)
Q Consensus       120 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~  199 (461)
                      ...+.+.++.+.+  +.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.  ++.+.++++.++.
T Consensus       237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~  312 (392)
T PRK12382        237 TFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--PTAWVALAGAALT  312 (392)
T ss_pred             HHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHH
Confidence            3344444555654  35666777888889999999999999999999999999999988888887  8888888899999


Q ss_pred             hhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 012519          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (461)
Q Consensus       200 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (461)
                      |++.+...+...+.+.|.+|+++||++.++.+....+|..+||.+.+.+.++.||++.|++.+++.++..+..++..
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            99999888888889999999999999999999999999999999999999999999999999988887776666543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.61  E-value=6.4e-14  Score=135.37  Aligned_cols=162  Identities=14%  Similarity=0.063  Sum_probs=140.3

Q ss_pred             hHhhhhhhhhh-cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 012519          118 MSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (461)
Q Consensus       118 ~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (461)
                      .....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.  ++.+.++++.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHHH
Confidence            33455666666 89999999999999999999999999999999888888888888888888888887  8888888889


Q ss_pred             HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 012519          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (461)
                      ++.|++.+...+...+++.|..|+++||++++++.....+|..+|+.+.|.+.+..|++..+++.+.+.++..++.....
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            99999988877888899999999999999999999999999999999999999999999999988887777666666665


Q ss_pred             CCCCC
Q 012519          277 SSTPD  281 (461)
Q Consensus       277 ~~~~~  281 (461)
                      ++.++
T Consensus       400 ~~~~~  404 (417)
T PRK10489        400 GELRR  404 (417)
T ss_pred             ccccc
Confidence            55443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.61  E-value=2.6e-14  Score=137.77  Aligned_cols=158  Identities=17%  Similarity=0.152  Sum_probs=132.4

Q ss_pred             hHhhhhhhhhhcCCCch----hHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHH
Q 012519          118 MSVAIVPLSLAHGWSRS----FSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALL  193 (461)
Q Consensus       118 ~~~~~~~i~~~~~~s~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~  193 (461)
                      ..+..+.+..+.+.+..    ..+.+.++..++..++.++.|++.||+|||+.+..+..+..++.+...+.  ++.+.++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  315 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQLG  315 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHHH
Confidence            33444544444332322    34666677788888999999999999999999999998888888877777  8888899


Q ss_pred             HHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 012519          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (461)
Q Consensus       194 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  273 (461)
                      +.+++.|++.+...+...+++.+..|+++||+.+++......+|..+||.+++.+.++.||++.|++.+++.++..++.+
T Consensus       316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888777666


Q ss_pred             HhcC
Q 012519          274 SATS  277 (461)
Q Consensus       274 ~~~~  277 (461)
                      +..+
T Consensus       396 ~~~~  399 (408)
T PRK09874        396 NSLR  399 (408)
T ss_pred             HHHH
Confidence            5443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.61  E-value=5.7e-14  Score=132.31  Aligned_cols=163  Identities=25%  Similarity=0.327  Sum_probs=145.4

Q ss_pred             HHHHHHHhhhHhhhhhhhhhc-CCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchH-HHHHHHHHHHHHHHHhhcccc
Q 012519          109 ALCNADRVVMSVAIVPLSLAH-GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI-IMAWGVALWSLATFLTPWAAD  186 (461)
Q Consensus       109 ~~~~~~~~~~~~~~~~i~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~  186 (461)
                      +.............|.+.++. |.+..+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.++....  
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  262 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--  262 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--
Confidence            333344444555566666654 899999999999999999999999999999999999 9999999999999999888  


Q ss_pred             ccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 012519          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGF  266 (461)
Q Consensus       187 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~  266 (461)
                      ++.+.+++..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..|++.+++.+
T Consensus       263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~  342 (352)
T cd06174         263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL  342 (352)
T ss_pred             ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHH
Q 012519          267 LWVLVWL  273 (461)
Q Consensus       267 ~~~~~~~  273 (461)
                      +..+..+
T Consensus       343 i~~i~~~  349 (352)
T cd06174         343 LAALLLL  349 (352)
T ss_pred             HHHHHhe
Confidence            7766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.59  E-value=1.3e-13  Score=131.21  Aligned_cols=148  Identities=13%  Similarity=0.048  Sum_probs=127.4

Q ss_pred             hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh
Q 012519          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE  203 (461)
Q Consensus       124 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~  203 (461)
                      .+.+++|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..+...+.  ++.+.+++.+++.|++.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~  302 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLNAIFI  302 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            3457789999999999888888888889999999999999999988887776666666666  78888888999999999


Q ss_pred             hchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 012519          204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (461)
Q Consensus       204 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  274 (461)
                      +...+....++.|..|+ ++++++++++....+|..++|.+++.+.+..||+..|++.+++.++..++..+
T Consensus       303 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       303 GILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            98888888999999874 66799999999999999999999999999999999999988887776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.59  E-value=9.6e-14  Score=135.97  Aligned_cols=171  Identities=18%  Similarity=0.083  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH-
Q 012519          103 MLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-  180 (461)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-  180 (461)
                      .+++..++............|. +.+++|.+..+.++..+...++..++.+++|+++||+|||+.++....+..++..+ 
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~  341 (467)
T PRK09556        262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLG  341 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence            3444444444444445555664 55679999999999999999999999999999999999998776655444443322 


Q ss_pred             -hhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHh--------
Q 012519          181 -TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMS--------  250 (461)
Q Consensus       181 -~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~--------  250 (461)
                       ....  ++.+.+.+.+++.|++.............|.+|+++||.+.|+.+....+ |..++|.+.|.+.+        
T Consensus       342 ~~~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        342 VYQHA--TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHhc--CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence             2233  56777778888888654444444446777999999999999999988886 77999999999999        


Q ss_pred             ----hcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          251 ----QAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       251 ----~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                          ..||+..|++.++..++..+..++.
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence                5789999999877777765555443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.59  E-value=1.1e-11  Score=114.61  Aligned_cols=330  Identities=13%  Similarity=0.078  Sum_probs=220.5

Q ss_pred             hhhhhhhhh-cCCCchhHH-HHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Q 012519          120 VAIVPLSLA-HGWSRSFSG-IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (461)
Q Consensus       120 ~~~~~i~~~-~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  197 (461)
                      ...|.+.+. .|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+.-+.  ++.+.+-+..+
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q~  102 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQF  102 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHHH
Confidence            334555554 788888764 55566677778888999999999999999999999999999999999  99999999999


Q ss_pred             HHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHHHHh
Q 012519          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       198 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      +.|++.+. ..+.++++-...|+++-.++.+...++.-+|..++.++|..+...-  +.+...++......+..+..+ +
T Consensus       103 ~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~-f  180 (412)
T PF01770_consen  103 FYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIAL-F  180 (412)
T ss_pred             HHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-H
Confidence            99999884 7788899998999999999999999999999999999999887743  345454554443334344434 3


Q ss_pred             cCCCCCCC---CCcch-h-----HHHHHHHhhcCc--cccCCCCCCC-------CCChhHHHHhcchhhHHHHHHHHHHH
Q 012519          276 TSSTPDRH---PQISK-Y-----ELEYILREKQKP--LLMGNKHKPA-------TVIPPFRRLLSKMPTWSIIVANAMHS  337 (461)
Q Consensus       276 ~~~~~~~~---~~~~~-~-----~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (461)
                      +|..++..   +.... .     +.+...+.....  ..........       ..+.++++..++|.++...+-+.+..
T Consensus       181 LP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~at  260 (412)
T PF01770_consen  181 LPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFAT  260 (412)
T ss_pred             cCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            45444321   11100 0     000000000000  0000000000       12345567778899998888888888


Q ss_pred             HHHHHHHHhHHHHHHHh--hCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHH
Q 012519          338 WGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (461)
Q Consensus       338 ~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (461)
                      .+++.+.+|......+.  -+-+..-.|.+-+...+.+.++.+..|++..++.+.       ....+....++.+..+++
T Consensus       261 cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~l  333 (412)
T PF01770_consen  261 CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFL  333 (412)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHH
Confidence            88888888887777764  123334567777888888888888888885555544       234444445556666667


Q ss_pred             HhccChhHHHHHHHHHHHHHHhhhhhchhHhhh-hhcccccccccC
Q 012519          416 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ-EIAPQYSGVLHG  460 (461)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~g~~~g  460 (461)
                      ....++.+...+..++....+.+.......-++ .+..+.-|.+.|
T Consensus       334 m~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFG  379 (412)
T PF01770_consen  334 MSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFG  379 (412)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeee
Confidence            777778887777777666666665544333333 333345665555

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.58  E-value=4.4e-13  Score=127.83  Aligned_cols=151  Identities=15%  Similarity=0.169  Sum_probs=126.2

Q ss_pred             hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Q 012519          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (461)
Q Consensus       120 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~  199 (461)
                      ..+|.+.++.|.+..+.+++.+.+.++..+++++.|++.||+|+|+++..+..+..++.+...    +. +..+...++.
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~----~~-~~~~~~~~l~  295 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML----SQ-AAMAPALFIL  295 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----hh-HHHHHHHHHH
Confidence            346667777899999999999999999999999999999999999999988888877665442    22 2334566778


Q ss_pred             hhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       200 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      |++.+...|...+++.|..|+++++.+.+......++|..+||.++|.+.++.||++.|.+.+.+.++..+..++.
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            8877778899999999999988888888998899999999999999999999999999999888887665555543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.57  E-value=4.4e-13  Score=128.28  Aligned_cols=153  Identities=17%  Similarity=0.099  Sum_probs=126.9

Q ss_pred             hhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH-HhhccccccHHHHHHHHHHHh
Q 012519          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LTPWAADTSLLALLAMRAVVG  200 (461)
Q Consensus       122 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~~r~l~G  200 (461)
                      .+.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.. .+..+..++.. +....  ++.+.++++.++.|
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA--NSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh--chHHHHHHHHHHHH
Confidence            3445666899999999999999999999999999999999988754 44444444433 33455  77888888999999


Q ss_pred             hhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCC
Q 012519          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSS  278 (461)
Q Consensus       201 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  278 (461)
                      ++.+...+...+.+.+..| ++|+++++++.....+|..+||+++|.+.+++|++..|++.+++.++.++..+...++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFRR  382 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHccc
Confidence            9988777777888888876 6889999999999999999999999999999999999999999888877777766543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.57  E-value=2.3e-13  Score=130.37  Aligned_cols=166  Identities=17%  Similarity=0.110  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHhhhHhhhhhh-hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchH--HH------HHHHHHHHH
Q 012519          106 LALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI--IM------AWGVALWSL  176 (461)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~~------~~~~~~~~i  176 (461)
                      +..++............|.+ .++++.+..+.+++.+...++..++.++.|+++||+|||+  ..      ..+.++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (399)
T TIGR00893       222 LGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSL  301 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence            33333344444455555544 4568999999999999999999999999999999999996  11      111111222


Q ss_pred             HHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ch
Q 012519          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IF  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr  255 (461)
                      ........  ++.+..+...++.+++.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |+
T Consensus       302 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~  378 (399)
T TIGR00893       302 LMFATNYV--NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFA  378 (399)
T ss_pred             HHHHhccc--hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchh
Confidence            22222222  455555555555555555 789999999999999999999999999999999999999999999988 99


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 012519          256 GPFVIFGLSGFLWVLVWLS  274 (461)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~  274 (461)
                      ..|++.+++.++..+..+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       379 GALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999988887776655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.57  E-value=7.1e-14  Score=138.32  Aligned_cols=152  Identities=13%  Similarity=0.108  Sum_probs=120.6

Q ss_pred             hHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 012519          118 MSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (461)
Q Consensus       118 ~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (461)
                      ....+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++..++.++.......+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            345566666 5899999999999999999999999999999999999999998887777665544433224445555555


Q ss_pred             HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 012519          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV  269 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~  269 (461)
                      ++.++......+...+++.|.+|+++|++++++......+|..+||.+++.+.+++||+..+.+.+....+..
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~  446 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVV  446 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence            5555444445567778899999999999999999999999999999999999999999988877665444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.55  E-value=1.4e-13  Score=134.04  Aligned_cols=153  Identities=14%  Similarity=0.061  Sum_probs=126.8

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh--cchHHHHH--HHHHHHHHHHHhhccccccHHHH
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAW--GVALWSLATFLTPWAADTSLLAL  192 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~~~~~l  192 (461)
                      .....++.+.+++|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.++....  ++++.+
T Consensus       259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~  336 (455)
T TIGR00892       259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--GDYTGL  336 (455)
T ss_pred             chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--chHHHH
Confidence            344455666678899999999999999999999999999999983  34443333  344444555566667  889999


Q ss_pred             HHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHHH
Q 012519          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       193 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~  271 (461)
                      ++.+++.|++.+...+...+++.|.+|++++++++++++....+|..+||.+++.+.+.. +|++.|++.+++.++..+.
T Consensus       337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       337 VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999887 4999999988877665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.55  E-value=1.4e-13  Score=131.95  Aligned_cols=159  Identities=13%  Similarity=0.120  Sum_probs=123.1

Q ss_pred             HHHHHHHHhhhHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHH--HHhhcc
Q 012519          108 LALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT--FLTPWA  184 (461)
Q Consensus       108 ~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~~  184 (461)
                      .+.............|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..  ++..+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T TIGR00883       228 VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL  307 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333344445556555 6789999999999999999999999999999999999998776555444332  222222


Q ss_pred             ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHH
Q 012519          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFG  262 (461)
Q Consensus       185 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~  262 (461)
                      ..++.+.+++..++.|++.+...+...+++.|.+|+++|+++.++. +....+|..++|.+++.+.++.| |++.++..+
T Consensus       308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            1256777788889999999889999999999999999999999984 56677899999999999999988 988877766


Q ss_pred             HHHH
Q 012519          263 LSGF  266 (461)
Q Consensus       263 ~~~~  266 (461)
                      ...+
T Consensus       388 ~~~l  391 (394)
T TIGR00883       388 ALAL  391 (394)
T ss_pred             HHHH
Confidence            5544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03699 putative transporter; Provisional

Probab=99.55  E-value=2.7e-13  Score=129.85  Aligned_cols=156  Identities=12%  Similarity=0.088  Sum_probs=130.9

Q ss_pred             hhHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q 012519          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (461)
Q Consensus       117 ~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~  195 (461)
                      .+....|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|+|+.+.....+..+...+....  ++.+.+.+.
T Consensus       223 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~  300 (394)
T PRK03699        223 TFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--DDPSHLLYA  300 (394)
T ss_pred             HHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc--CCchHHHHH
Confidence            4444566555 6789999999999999999999999999999999999999998888777777776666  777777778


Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      .++.|++.+..++...++..|..| +++++..+.......+|..++|.+.+.+.+..||+..+++.+++.++..+..+..
T Consensus       301 ~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        301 ILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            889999888888888888888775 5567888999999999999999999999999999999998888777765544443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.54  E-value=9.1e-13  Score=126.06  Aligned_cols=163  Identities=15%  Similarity=0.106  Sum_probs=129.7

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (461)
                      ......|.+.+++|.+..+.++..+.+.++..++.++.|++.||+|||+.+.++..+..++.++....+ ++...+.  -
T Consensus       223 ~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~--~  299 (393)
T PRK09705        223 SLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-LQLPVLW--A  299 (393)
T ss_pred             HHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-chHHHHH--H
Confidence            444455666667899999999999999999999999999999999999999998888877776554431 3322222  2


Q ss_pred             HHHhhhhhchhhHHHHHHHhhcC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHH
Q 012519          197 AVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLS  274 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~  274 (461)
                      ++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.++.| |...|++.++.+++..+..+.
T Consensus       300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK09705        300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR  379 (393)
T ss_pred             HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            46688888888887777777774 6789999999999999999999999999999886 888888888777777666666


Q ss_pred             hcCCCCCC
Q 012519          275 ATSSTPDR  282 (461)
Q Consensus       275 ~~~~~~~~  282 (461)
                      +.||++++
T Consensus       380 ~~~~~~~~  387 (393)
T PRK09705        380 FAPARFPQ  387 (393)
T ss_pred             hccccccc
Confidence            66665543

>TIGR00897 2A0118 polyol permease family

Probab=99.54  E-value=9.3e-13  Score=126.48  Aligned_cols=165  Identities=12%  Similarity=0.089  Sum_probs=126.1

Q ss_pred             HHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHH-HHHHHHHHHHHHhhcc---
Q 012519          109 ALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA-WGVALWSLATFLTPWA---  184 (461)
Q Consensus       109 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~---  184 (461)
                      ++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+.   
T Consensus       232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~  311 (402)
T TIGR00897       232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH  311 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333333344455667777889999999999999999999999999999999999988764 3333333333332211   


Q ss_pred             ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 012519          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (461)
Q Consensus       185 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~  264 (461)
                      ..++.+.+++..++.|++.+...+ ....+.|.. +++|++++|+.+....+|..++|.+++.+.+..||+..|++.+++
T Consensus       312 ~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       312 FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            115677778888999998886654 455667765 468999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHh
Q 012519          265 GFLWVLVWLSA  275 (461)
Q Consensus       265 ~~~~~~~~~~~  275 (461)
                      .++..++..+.
T Consensus       390 ~~i~~~~~~~~  400 (402)
T TIGR00897       390 YVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHh
Confidence            87766665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.53  E-value=3.2e-13  Score=132.95  Aligned_cols=181  Identities=17%  Similarity=0.108  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      .+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  364 (481)
T TIGR00879       285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF  364 (481)
T ss_pred             HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33333444443333334445566778888999998899999999999999999999999999999999999888888777


Q ss_pred             Hhhc---cccc------cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012519          180 LTPW---AADT------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (461)
Q Consensus       180 ~~~~---~~~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~  250 (461)
                      +.++   ...+      +...+....++.+.......+....++.|.+|+++|++++++......+|.+++|.+.+.+.+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~  444 (481)
T TIGR00879       365 VLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE  444 (481)
T ss_pred             HHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6652   1112      333333333333332233446667788999999999999999999999999999999999999


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       251 ~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      +.+|++.|++.++++++..+..+++.||.+
T Consensus       445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             hcCccceehhHHHHHHHHHHHHheecccCC
Confidence            999999999999888887777776666543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.53  E-value=1.4e-12  Score=126.53  Aligned_cols=160  Identities=14%  Similarity=0.023  Sum_probs=114.4

Q ss_pred             hhhHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh--cch-HHHHH---HHHHHHHHHHHhhcccccc
Q 012519          116 VVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGK-IIMAW---GVALWSLATFLTPWAADTS  188 (461)
Q Consensus       116 ~~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr-~~~~~---~~~~~~i~~~~~~~~~~~~  188 (461)
                      ......+|.+. +++|.+..+.++..+.+.++..++.++.|+++||+  ++| .....   +..+..++..... .  .+
T Consensus       260 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~--~~  336 (434)
T PRK11663        260 AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-F--AS  336 (434)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-c--cc
Confidence            34444555554 67899999999999999999999999999999999  333 32222   2222222222222 2  34


Q ss_pred             HHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 012519          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (461)
Q Consensus       189 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  268 (461)
                      ...+.+..+..|++..........++.|.+|+++|++++|+.+....+|..++|.+.+++.++.||+..|++.++++++.
T Consensus       337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~  416 (434)
T PRK11663        337 YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS  416 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence            44444444555554332333345567899999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHhcCC
Q 012519          269 VLVWLSATSS  278 (461)
Q Consensus       269 ~~~~~~~~~~  278 (461)
                      .+..++..++
T Consensus       417 ~~~~~~~~~~  426 (434)
T PRK11663        417 ALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHhh
Confidence            7766665443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.53  E-value=8.9e-13  Score=128.60  Aligned_cols=160  Identities=11%  Similarity=0.004  Sum_probs=113.4

Q ss_pred             hhHhhhhhhhh-hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh--cchHHH-HHHHHHHHHHHHHhhccccccHHHH
Q 012519          117 VMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIM-AWGVALWSLATFLTPWAADTSLLAL  192 (461)
Q Consensus       117 ~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~l  192 (461)
                      .....+|.+.+ ++|.+..+.++....+.++..++.++.|+++||+  |||+.. +....+..++.++..+....+.+.+
T Consensus       271 ~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  350 (452)
T PRK11273        271 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVD  350 (452)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence            44455666554 5789999999999999999999999999999999  555432 2223333333333222211455555


Q ss_pred             HHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 012519          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA-IGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       193 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  271 (461)
                      +++.++.|.+..........+..|.+|+++||++.|+.+....+|.. ++|.+.+.+.+++||+..|++.++.+++.++.
T Consensus       351 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        351 MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            55556666544333334455678999999999999999988888765 47999999999999999999988877776665


Q ss_pred             HHHhc
Q 012519          272 WLSAT  276 (461)
Q Consensus       272 ~~~~~  276 (461)
                      ...+.
T Consensus       431 ~~~~~  435 (452)
T PRK11273        431 LIVVM  435 (452)
T ss_pred             HHHHh
Confidence            55443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.52  E-value=1.9e-12  Score=123.52  Aligned_cols=146  Identities=19%  Similarity=0.085  Sum_probs=125.4

Q ss_pred             hhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh
Q 012519          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (461)
                      ..|.+.++.|.+..+.|++.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.++.  ++.+.+++..++.|
T Consensus       227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g  304 (382)
T PRK11128        227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQILHC  304 (382)
T ss_pred             HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHH
Confidence            3344556789999999999999999999999999999999999999999999999988888888  89999999999999


Q ss_pred             hhhhchhhHHHHHHHhhcCchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 012519          201 LAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (461)
Q Consensus       201 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  270 (461)
                      ++.+...+....++.+. ++++++++.++.+ ....+|..+||.++|.+.+.+|+ ..|+..+++.++.++
T Consensus       305 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        305 GTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            99998899999998887 5677889999886 56678889999999999999987 467766666654433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.49  E-value=5.5e-13  Score=128.38  Aligned_cols=136  Identities=13%  Similarity=0.082  Sum_probs=115.7

Q ss_pred             hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH-HhhccccccHHHHHHHHHHHhhh
Q 012519          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LTPWAADTSLLALLAMRAVVGLA  202 (461)
Q Consensus       124 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~~r~l~G~~  202 (461)
                      .+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+..+ +....  ++.+.+.+..++.|++
T Consensus       264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  341 (405)
T TIGR00891       264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG--ANVAVLGLGLFFQQML  341 (405)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999888776643332 33344  6777777777888887


Q ss_pred             hhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHH
Q 012519          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIF  261 (461)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~  261 (461)
                      .+...+....++.|.+|+++|++++|+.+....+|..++|++++.+.++.| |+..+...
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            777788888999999999999999999999999999999999999999998 88766653

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.49  E-value=1.7e-12  Score=125.89  Aligned_cols=143  Identities=13%  Similarity=0.080  Sum_probs=108.5

Q ss_pred             hHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Q 012519          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (461)
Q Consensus       118 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  197 (461)
                      +...+|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..++......++...+.+..+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            34456777777899999999999999999999999999999999999999988887776665544331123332222222


Q ss_pred             HHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 012519          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (461)
Q Consensus       198 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~  260 (461)
                      ..+++.....+..+.++.|.+|+++||+++|+......+|..++|.+.+++.++.|+....++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            223332334456677889999999999999999999999999999999999998886654333

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.49  E-value=3.5e-11  Score=118.20  Aligned_cols=155  Identities=14%  Similarity=0.060  Sum_probs=123.6

Q ss_pred             hhhhhhhhcCCCchhHHHHHH-HHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh---hccccccHHHHHHHH
Q 012519          121 AIVPLSLAHGWSRSFSGIVQS-SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMR  196 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~l~~~r  196 (461)
                      ..|.+.+++|.+..+.+++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.++.   +.. .++.+.+.+.-
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~l~~~~  323 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHH
Confidence            344556679999999999974 6678999999999999999999998877666555544322   232 14565666666


Q ss_pred             HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 012519          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (461)
                      +++.++.|...+...++..+..+++.+++..++.+....+|..+++.+.|.+.+..||+..|.+.++++++.++...+..
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666666667777889999999999999999999999999999999999999999999999998888888776666553

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.48  E-value=2e-12  Score=127.39  Aligned_cols=164  Identities=18%  Similarity=0.069  Sum_probs=124.8

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcccccc-H-HHHHH
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS-L-LALLA  194 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~-~-~~l~~  194 (461)
                      ......|.+.+++|.+.....+......+...++.++.|+++||+|||++++.+.++.+++.++.+.....+ . .....
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            344456888888998888788888888889999999999999999999999999999888877765431011 1 12233


Q ss_pred             HHHHHhhhhhc-hhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH------HhhcCchhHHHHHHHHHHH
Q 012519          195 MRAVVGLAEGV-ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL------MSQAGIFGPFVIFGLSGFL  267 (461)
Q Consensus       195 ~r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l------~~~~gwr~~f~~~~~~~~~  267 (461)
                      +-++.+++.+. ..+....++.|.+|+++|++++|+......+|..+++.+.+.+      .+..+|++.|++.++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  448 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence            34444444443 3467889999999999999999999999999999887666544      3578899999998888777


Q ss_pred             HHHHHHHhcCCCC
Q 012519          268 WVLVWLSATSSTP  280 (461)
Q Consensus       268 ~~~~~~~~~~~~~  280 (461)
                      ..++.+++.||++
T Consensus       449 ~~~~~~~~~~e~~  461 (479)
T PRK10077        449 AALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHhccccCC
Confidence            7777666666554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.48  E-value=6.6e-12  Score=115.51  Aligned_cols=163  Identities=20%  Similarity=0.205  Sum_probs=136.4

Q ss_pred             HHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHH
Q 012519          112 NADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLA  191 (461)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (461)
                      ......+..+-|.+++..|++.+.++++.-.|.++..++..+.|+++|| +.|+.+.....+..+..+...+.. ++.+.
T Consensus       225 ~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-~~~~~  302 (394)
T COG2814         225 TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-ASPAL  302 (394)
T ss_pred             cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-chHHH
Confidence            3344567778899999999999999999999999999999999999999 999999988787777777665552 56667


Q ss_pred             HHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 012519          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       192 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  271 (461)
                      .++.-++.|++.+.........+++. -++.+..+.++....+++|..+|..+||.+.+++|+....++.+++.++..++
T Consensus       303 ~~~~~~~wg~a~~~~~~~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~  381 (394)
T COG2814         303 ALALLFLWGFAFSPALQGLQTRLARL-APDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLL  381 (394)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence            77777778887776666666666663 35889999999999999999999999999999999999999999998888777


Q ss_pred             HHHhcC
Q 012519          272 WLSATS  277 (461)
Q Consensus       272 ~~~~~~  277 (461)
                      .+...+
T Consensus       382 ~~~~~~  387 (394)
T COG2814         382 ALLSAR  387 (394)
T ss_pred             HHHHHh
Confidence            666543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.47  E-value=1.4e-12  Score=118.59  Aligned_cols=181  Identities=19%  Similarity=0.112  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh--cchH-HHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKI-IMAWGVALW  174 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~-~~~~~~~~~  174 (461)
                      ..++.+++++++.+..+..+.--.|. +.|..|.+..++++..+++-++...+.+++|+++||+  |||. +-++.++..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            45677778888888777777666654 5567799999999999999999999999999999995  6775 445555555


Q ss_pred             HHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcC
Q 012519          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAG  253 (461)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~g  253 (461)
                      .++.+..-++++.|+++..++-++.|+..-+..-..-....|..|++--|.+.|+...+..+ |...+....+++.+.+|
T Consensus       332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g  411 (448)
T COG2271         332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG  411 (448)
T ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence            55666666664456788999999999987777777777789999999999999999999999 99999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCC
Q 012519          254 IFGPFVIFGLSGFLWVLVWLSATSST  279 (461)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~  279 (461)
                      |...|.+..+.+++..++.+.....+
T Consensus       412 W~g~Fi~~~~~a~l~~lll~~~~~~~  437 (448)
T COG2271         412 WDGGFIVLSIAALLAILLLLPVWNAE  437 (448)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999998888887777666554433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.47  E-value=6.9e-12  Score=122.39  Aligned_cols=154  Identities=21%  Similarity=0.205  Sum_probs=138.8

Q ss_pred             hHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 012519          118 MSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (461)
Q Consensus       118 ~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (461)
                      +...+|.+. +++|.++..+|++.+++.+|..+++++.+++.+|+++++.+..+.++++++.+..+++  ++.+..++.-
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~l  314 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIAL  314 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHHH
Confidence            344567665 5689999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 012519          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  273 (461)
                      ++.|++.........+.+.+..|++.||++++++.+....+..+|..+.|.+.+.+|-+..+.+.++..++..++.+
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888999999999999999999999999999999999999999999999999999887776655555444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09952 shikimate transporter; Provisional

Probab=99.46  E-value=1.1e-11  Score=120.38  Aligned_cols=152  Identities=11%  Similarity=0.042  Sum_probs=115.0

Q ss_pred             hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHhh
Q 012519          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMRAVVGL  201 (461)
Q Consensus       124 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~l~~~r~l~G~  201 (461)
                      .+.+++|.+......+.....+...++.++.|+++||+|||++++.+.++..++.+.....  ..++.+.+++..++.|+
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            4456788888776666666777778889999999999999999988877665554332221  11345555566677788


Q ss_pred             hhhchhhHHHHHHHhhcCchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHHHHh
Q 012519          202 AEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       202 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      +.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+..  +|+..+...++..++..+..+..
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            888888889999999999999999999854 445589999999999998854  48888888777777766665543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.46  E-value=4e-12  Score=121.98  Aligned_cols=143  Identities=13%  Similarity=0.091  Sum_probs=124.3

Q ss_pred             CCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhH
Q 012519          130 GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPA  209 (461)
Q Consensus       130 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  209 (461)
                      +.+....|++.++..+...++.+..|++.||+|+|+.+.++.++.+++..+.+.+  ++.+.+++.+++.|++.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHH
Confidence            5566778999999999999999999999999999999999999999888887777  89999999999999998777777


Q ss_pred             HHHHHHhhcCchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 012519          210 MNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (461)
Q Consensus       210 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  274 (461)
                      ...++.+..+++.++...+. .+....+|..+++.++|++.+..||+..|.+.+++.++..+...+
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888777766 678899999999999999999999999999999888776665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.46  E-value=2.9e-12  Score=121.44  Aligned_cols=132  Identities=17%  Similarity=0.235  Sum_probs=119.8

Q ss_pred             hhhhhhhhh-cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccc-cHHHHHHHHH
Q 012519          120 VAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT-SLLALLAMRA  197 (461)
Q Consensus       120 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~-~~~~l~~~r~  197 (461)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++.++..+.  + +++.+++..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  309 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--PPNFPLFLVLWF  309 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHH
Confidence            456666665 89999999999999999999999999999999999999999888888888888777  6 4888889999


Q ss_pred             HHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012519          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (461)
Q Consensus       198 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  253 (461)
                      +.|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+++.+.+++|
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999988754

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.44  E-value=1e-11  Score=118.85  Aligned_cols=151  Identities=18%  Similarity=0.122  Sum_probs=117.2

Q ss_pred             hhhhhhhhcCCCchhHHHHHHHHHH-HHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc-c---ccccHHHHHHH
Q 012519          121 AIVPLSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-A---ADTSLLALLAM  195 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~---~~~~~~~l~~~  195 (461)
                      ..+.+.+|.|.+++++|++.....+ ...++.++.|++.||+|+|+.+.++.++.++..+.... .   ..++.+.++..
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            3455566789999999999888764 66677899999999999999998877666333322211 1   01344555556


Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFPQ-TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  271 (461)
                      .++.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.++.||+..|++.+++.++..+.
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            6677777787788888888888766 789999999999999999999999999999999999999888776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00895 2A0115 benzoate transport

Probab=99.44  E-value=5.4e-12  Score=121.10  Aligned_cols=141  Identities=21%  Similarity=0.220  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccc
Q 012519          106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA  185 (461)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  185 (461)
                      +..++............|.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+....+...+..++.... 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  335 (398)
T TIGR00895       257 LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTL-  335 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh-
Confidence            3333333444445556678888999999999999999999999999999999999999955544444443333333334 


Q ss_pred             cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       186 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                       ++.+.+++..++.|++.+...+...+++.|.+|+++|++++|+......+|..+||.++|.+
T Consensus       336 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       336 -FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             -hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence             67788888899999999999999999999999999999999999999999999999998875

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.44  E-value=1.7e-11  Score=118.44  Aligned_cols=157  Identities=15%  Similarity=0.161  Sum_probs=136.6

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcch--HHHHHHHHHHHHHHHHhhc--------ccc
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALWSLATFLTPW--------AAD  186 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~~~  186 (461)
                      ..........+++|++..+...+..+..+..+++++++|++.||+|.|  ++++++++++.+..+...+        .  
T Consensus       300 i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~--  377 (477)
T PF11700_consen  300 IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL--  377 (477)
T ss_pred             HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc--
Confidence            334444555668999999999999999999999999999999999999  8988888888665555444        4  


Q ss_pred             ccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHH
Q 012519          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSG  265 (461)
Q Consensus       187 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~  265 (461)
                      ++-+.+++.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++.+.+.+..| -|+.++...++.
T Consensus       378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf  457 (477)
T PF11700_consen  378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLF  457 (477)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            7888999999999999999999999999999999999999999999999999999999999999887 888888888777


Q ss_pred             HHHHHHHHHh
Q 012519          266 FLWVLVWLSA  275 (461)
Q Consensus       266 ~~~~~~~~~~  275 (461)
                      ++.+++.++.
T Consensus       458 ~~gl~ll~~v  467 (477)
T PF11700_consen  458 LIGLILLFFV  467 (477)
T ss_pred             HHHHHHHhhc
Confidence            7766666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.42  E-value=8.9e-12  Score=121.33  Aligned_cols=132  Identities=17%  Similarity=0.164  Sum_probs=110.5

Q ss_pred             hhhhhhh-cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh
Q 012519          122 IVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (461)
Q Consensus       122 ~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (461)
                      .+.+.++ ++ +..+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+.. ++.+.+++..++.|
T Consensus       245 ~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  322 (437)
T TIGR00792       245 QVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILAG  322 (437)
T ss_pred             hheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHH
Confidence            3444333 34 566778888888999999999999999999999999999998888877766652 46677778888999


Q ss_pred             hhhhchhhHHHHHHHhhcC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 012519          201 LAEGVALPAMNNMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (461)
Q Consensus       201 ~~~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr  255 (461)
                      ++.+...+...++++|..+       ++++|.+.++.+....+|..+++.+.+.+.+..||.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       323 FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999899999999998865       456799999999999999999999999999887774

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.40  E-value=3.5e-11  Score=116.84  Aligned_cols=141  Identities=17%  Similarity=0.091  Sum_probs=104.1

Q ss_pred             HhhhHhhhhhhhh-hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH-Hh-hccccccHHH
Q 012519          115 RVVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LT-PWAADTSLLA  191 (461)
Q Consensus       115 ~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~-~~~~~~~~~~  191 (461)
                      ........|.+.+ .+|.+..+.++....+.++..++.++.|+++||+|||++++++.++..+... .. .....+++..
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFAR  333 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            3344455666554 4799999999999999999999999999999999999988876554433221 11 1111145555


Q ss_pred             HHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCch
Q 012519          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG-GFTSGNAIGLVLSPILMSQAGIF  255 (461)
Q Consensus       192 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~gwr  255 (461)
                      +.+..++.|++.+...+....++.|.+|+++|+.++++... +..++..++|.+.+.+.++.|++
T Consensus       334 ~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        334 MLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            55556666777777777777889999999999999999644 44456788999999999988865

>PRK10504 putative transporter; Provisional

Probab=99.40  E-value=1.6e-11  Score=120.64  Aligned_cols=139  Identities=13%  Similarity=0.142  Sum_probs=115.9

Q ss_pred             hhhHhhhhhhhh-hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccc-cccHHHHH
Q 012519          116 VVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-DTSLLALL  193 (461)
Q Consensus       116 ~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~l~  193 (461)
                      .......|.+.+ .+|.++.+.+++...+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.. .++.+.+.
T Consensus       278 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (471)
T PRK10504        278 GMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLP  357 (471)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            344555666555 5899999999999999999999999999999999999999999888888766655532 13445555


Q ss_pred             HHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       194 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      +..++.|++.+...+....++.+..|+++++.+.++.+....+|..+|+.+++.+.+..|+
T Consensus       358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6678889998888889999999999999999999999999999999999999999877665

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.39  E-value=9.9e-12  Score=120.72  Aligned_cols=176  Identities=18%  Similarity=0.177  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhc--chHHHHHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG--GKIIMAWGVALWSL  176 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i  176 (461)
                      ..+....+...+...........+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..+++++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            4556666667777777778888899999999999999999999999999999999999999988  55688888899999


Q ss_pred             HHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ch
Q 012519          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IF  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr  255 (461)
                      +.+.++++  ++++.++...++.|++.|........++.|..+.++-..+.|+.....+++.++||++++.+.+..| |.
T Consensus       378 ~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  378 ARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            99999999  9999999999999999999888888899999999999999999999999999999999999998887 99


Q ss_pred             hHHHHHHHHHHHHHHHHHHhc
Q 012519          256 GPFVIFGLSGFLWVLVWLSAT  276 (461)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~  276 (461)
                      ..|+..++..++..+++++..
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eehhhcChHHHHHHHHHHHhH
Confidence            999999998888776666553

>PRK10054 putative transporter; Provisional

Probab=99.39  E-value=1.3e-11  Score=118.11  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=125.9

Q ss_pred             hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhch
Q 012519          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVA  206 (461)
Q Consensus       127 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~  206 (461)
                      ++.+.+....+++.+.+.+......++.|++.||+++|+.+..++.+..++.+...+.. ++.+.+++..++.|+|.+..
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~  315 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-NSLLLWGMSAAVFTVGEIIY  315 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHH
Confidence            45566777888888888888888889999999999999999999988888887776541 56777788889999999888


Q ss_pred             hhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          207 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       207 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      .|....++.+..|++.|+++.+..+ ...+|..+||.++|.+.++.|.+..|++.+....+..++.+.-.+|+|
T Consensus       316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            8888999999999999999998765 566899999999999999999998998877777666666554444444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.39  E-value=4.6e-11  Score=111.22  Aligned_cols=152  Identities=14%  Similarity=0.120  Sum_probs=133.1

Q ss_pred             hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchh
Q 012519          128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL  207 (461)
Q Consensus       128 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  207 (461)
                      +-+.++..+|.+.+...+.-++...+..++.+|+|.|+.++++..+.++=.++++++  ++.+.+.+.+.+.|+-.+...
T Consensus       253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~~i~~~klLH~~e~~l~l  330 (412)
T PF01306_consen  253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPWVISLIKLLHALEFPLLL  330 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHHH
Confidence            334456779999999999999999999999999999999999999999999999999  999999999999999999999


Q ss_pred             hHHHHHHHhhcCchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012519          208 PAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPD  281 (461)
Q Consensus       208 ~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~  281 (461)
                      .....|+++.+|+|-.++...+. +...++|..+.+.++|.+.|+.|.+.+|++.+.+.+...++..+.++++++
T Consensus       331 va~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  331 VAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            99999999999988888888874 788999999999999999999999999999999988888888877765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.38  E-value=2.5e-11  Score=117.96  Aligned_cols=162  Identities=11%  Similarity=-0.026  Sum_probs=112.3

Q ss_pred             hHhhhhhhhh-hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHH---HHHHHhhccccccHHHHH
Q 012519          118 MSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATFLTPWAADTSLLALL  193 (461)
Q Consensus       118 ~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~~~~~~~~~l~  193 (461)
                      .....|.+.+ ..|.+..+.++....+.++..++.++.|+++||+|+++....+..+..   ++.+........+.+...
T Consensus       270 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T TIGR00712       270 VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDM  349 (438)
T ss_pred             HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            3344555554 468999999999999999999999999999999975432222322221   222222222113444444


Q ss_pred             HHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 012519          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG-NAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW  272 (461)
Q Consensus       194 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  272 (461)
                      +.-++.|++.............|.+|+++|+.+.|+.+....+| ..+||.+.+.+.++.||...|++.++..++..+..
T Consensus       350 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  429 (438)
T TIGR00712       350 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  429 (438)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            44555565433333333456789999999999999998887776 57899999999999999999999888877777777


Q ss_pred             HHhcCCC
Q 012519          273 LSATSST  279 (461)
Q Consensus       273 ~~~~~~~  279 (461)
                      +++.+|+
T Consensus       430 ~~~~~~~  436 (438)
T TIGR00712       430 IVVMIGE  436 (438)
T ss_pred             HHHHhhc
Confidence            7666654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.38  E-value=2.3e-11  Score=105.91  Aligned_cols=179  Identities=17%  Similarity=0.102  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 012519           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (461)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  177 (461)
                      |..+........ .....+.++..-|++++.+|.|.+|...+.+...+|..+ .++.|.+.|++|++.++.+|.+...+|
T Consensus         2 W~~l~a~~~v~~-~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G   79 (250)
T PF06813_consen    2 WLSLVASIWVQL-CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG   79 (250)
T ss_pred             hhhHHHHHHHHH-hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            444444444333 334566788889999999999999999999999999986 588899999999999999999999999


Q ss_pred             HHHhhcc-----ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012519          178 TFLTPWA-----ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (461)
Q Consensus       178 ~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~  252 (461)
                      ..+...+     ...++|.+.+..++.|.+.+....++.....+.|| ++||.+.|+.-...+++..+-..+...+.+.-
T Consensus        80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~  158 (250)
T PF06813_consen   80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD  158 (250)
T ss_pred             HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence            8876554     12578999998999999888777888787889997 68999999999999999888877777665542


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          253 GIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       253 gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      .-+ .+++.+....+..+...++.+..|
T Consensus       159 ~~~-fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  159 PSS-FLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             hHH-HHHHHHHHHHHHHHHHhhheeccC
Confidence            233 333344433333333333344333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.38  E-value=9.3e-11  Score=107.85  Aligned_cols=156  Identities=16%  Similarity=0.133  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhhh---hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 012519          104 LALALALCNADRVVMSVAIVPLSL---AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  180 (461)
                      ..++.++............+.+.+   .+|.++.+.++..+.+..+..++.++.+++.||+|+|+++.++..+..++.++
T Consensus       145 ~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l  224 (310)
T TIGR01272       145 GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIG  224 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            344444444334444444444443   36899999999999999999999999999999999999999888888887766


Q ss_pred             hhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 012519          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (461)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~  260 (461)
                      ....  ++...+ .+-++.|++.+..+|...+...+..|+ +.+.+.++. ....+|..++|++.|.+.+..|.+..|++
T Consensus       225 ~~~~--~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       225 AALT--HGYVAM-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             HHHc--CCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence            6555  444333 355688999999999999999998864 456666775 56679999999999999999999998875


Q ss_pred             HHHH
Q 012519          261 FGLS  264 (461)
Q Consensus       261 ~~~~  264 (461)
                      ..+.
T Consensus       300 ~~~~  303 (310)
T TIGR01272       300 PVPC  303 (310)
T ss_pred             HHHH
Confidence            4443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.38  E-value=1.9e-11  Score=116.38  Aligned_cols=142  Identities=16%  Similarity=0.050  Sum_probs=105.5

Q ss_pred             hhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhc-chHH-HHHH-HHHHHHHHHHhhccccccHHHH
Q 012519          117 VMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-GKII-MAWG-VALWSLATFLTPWAADTSLLAL  192 (461)
Q Consensus       117 ~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~-~~~~-~~~~~i~~~~~~~~~~~~~~~l  192 (461)
                      ......|. +.+++|.+..+.+++.+.+.++..++.++.|++.||++ +|+. +... .....++..........+.+.+
T Consensus       234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
T TIGR00881       234 GILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMD  313 (379)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence            34444444 45668999999999999999999999999999999864 3332 2222 1222222222222211455666


Q ss_pred             HHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 012519          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (461)
Q Consensus       193 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f  258 (461)
                      ++..++.|+......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.||++.|
T Consensus       314 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       314 LICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            677778887666666677788999999999999999999999999999999999999999999764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.38  E-value=7e-12  Score=123.97  Aligned_cols=163  Identities=20%  Similarity=0.073  Sum_probs=109.4

Q ss_pred             hHhhhhhhhhhcCCCchhHHH------------HHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccc
Q 012519          118 MSVAIVPLSLAHGWSRSFSGI------------VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA  185 (461)
Q Consensus       118 ~~~~~~~i~~~~~~s~~~~~~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  185 (461)
                      .....|.+.++.|.+..+.+.            ......++..++.++.++++||+|||++++++.++.+++.++.++..
T Consensus       307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~  386 (502)
T TIGR00887       307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY  386 (502)
T ss_pred             cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            334467777777776543211            22344456667888999999999999999988888777766555431


Q ss_pred             c--ccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cC
Q 012519          186 D--TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ----------AG  253 (461)
Q Consensus       186 ~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----------~g  253 (461)
                      .  ++...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.+++|.+.+++.+.          .+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  466 (502)
T TIGR00887       387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW  466 (502)
T ss_pred             HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence            0  11111111112222222234556777889999999999999999999999999999999998873          34


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012519          254 IFGPFVIFGLSGFLWVLVWLSATSSTPD  281 (461)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~  281 (461)
                      +...|++.+++.++..+.. ++.||+..
T Consensus       467 ~~~~~~i~~~~~~~~~i~~-~~lpEt~~  493 (502)
T TIGR00887       467 MGHVLEIFALFMFLGILFT-LLIPETKG  493 (502)
T ss_pred             chHHHHHHHHHHHHHHHHh-eEeccCCC
Confidence            5667888887777665544 45566543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.37  E-value=4.7e-11  Score=114.96  Aligned_cols=156  Identities=13%  Similarity=0.033  Sum_probs=122.2

Q ss_pred             hhhh-hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccc---cccHHHHHHHHH
Q 012519          122 IVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA---DTSLLALLAMRA  197 (461)
Q Consensus       122 ~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~~~l~~~r~  197 (461)
                      .|.+ .+++|.++.+.++......++..++.++.|++.||+|+|+.+.++.++..++.++.++..   .++++.++++-+
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS  317 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            4443 567899999999998888889999999999999999999999998888877776665431   146777788889


Q ss_pred             HHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcC
Q 012519          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATS  277 (461)
Q Consensus       198 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  277 (461)
                      +.|++.+...+......... ++++||++.+..+....+|..+|+.+++.+.+..+|....+..++.+++.+++...+.+
T Consensus       318 ~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK15402        318 LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLK  396 (406)
T ss_pred             HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999988777666665444 45899999999999999999999999999988888776666655555555454444443


Q ss_pred             C
Q 012519          278 S  278 (461)
Q Consensus       278 ~  278 (461)
                      +
T Consensus       397 ~  397 (406)
T PRK15402        397 D  397 (406)
T ss_pred             c
Confidence            3

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.36  E-value=1.4e-10  Score=110.96  Aligned_cols=148  Identities=15%  Similarity=0.144  Sum_probs=119.1

Q ss_pred             hhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh
Q 012519          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (461)
                      ..|.+.+++|.+..+.+++...+.++..++.++.+++.||.+++..+....+...+..++....  ++.+.+.+..++.|
T Consensus       239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~G  316 (394)
T PRK10213        239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWG--SDKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Confidence            3466777889999999999999999999999999999999654433443333344444444455  67888888899999


Q ss_pred             hhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 012519          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       201 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  271 (461)
                      ++.+...+...+++.+..| ++++++.++......+|..+|+.++|.+.+..|++..++..+.+.++..+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            9999999999989999887 567788888888999999999999999999999999998877766554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.34  E-value=1.6e-10  Score=111.13  Aligned_cols=148  Identities=18%  Similarity=0.131  Sum_probs=109.4

Q ss_pred             hhhhhhcCCCchhHHHHHHHH-HHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh---hccccccHHHHHHHHH-
Q 012519          123 VPLSLAHGWSRSFSGIVQSSF-LWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMRA-  197 (461)
Q Consensus       123 ~~i~~~~~~s~~~~~~~~s~~-~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~l~~~r~-  197 (461)
                      +.+.+++|.+..+++++.+.. .++..++.++.|++.||+|+|+.+.++.++..+..+..   ++.+ ++.+.+++.-+ 
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~  312 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-KHLWTMALAIGI  312 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHH
Confidence            456677899999999998665 45688999999999999999998887777666554433   3331 45566655543 


Q ss_pred             ---HHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 012519          198 ---VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (461)
Q Consensus       198 ---l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  274 (461)
                         ..|++.+...+....++.+.+|.+++    ++.+...++|..+++.++|.+.+++||+..|.+.++++++..++.+.
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence               45566666677777777777775554    45555567777777778999999999999999998888776665544


Q ss_pred             h
Q 012519          275 A  275 (461)
Q Consensus       275 ~  275 (461)
                      .
T Consensus       389 ~  389 (402)
T PRK11902        389 M  389 (402)
T ss_pred             H
Confidence            3

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.33  E-value=5.1e-11  Score=114.23  Aligned_cols=152  Identities=16%  Similarity=0.136  Sum_probs=120.3

Q ss_pred             hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhh-hhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHH
Q 012519          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-YYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAV  198 (461)
Q Consensus       120 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l  198 (461)
                      ...|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.++.  ++++.+++..++
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l  306 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--SNLQQLFTLICL  306 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence            4466666666557888999988888777766666677776 4676777788888888888888788  888888888888


Q ss_pred             HhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---Cc-hhHHHHHHHHHHHHHHHHH
Q 012519          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA---GI-FGPFVIFGLSGFLWVLVWL  273 (461)
Q Consensus       199 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---gw-r~~f~~~~~~~~~~~~~~~  273 (461)
                      .|++.+...+...+++.+..|+++||+++++.+....+|..+||.++|.+.++.   ++ ...+++.++++++..+...
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence            999988888899999999999999999999999999999999999999999874   33 4555555555555544433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.33  E-value=2e-10  Score=111.43  Aligned_cols=156  Identities=17%  Similarity=0.082  Sum_probs=101.8

Q ss_pred             hHhhhhhh-hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh--ccccccHHHHHH
Q 012519          118 MSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--WAADTSLLALLA  194 (461)
Q Consensus       118 ~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~  194 (461)
                      ....+|.+ .+++|.+..+.++..++..++..++.++.|+++||+|||+.++++.++.++..+...  ....++.+..+.
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            33445554 466899999999999988888899999999999999999988776665433332111  110133333222


Q ss_pred             HHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHH
Q 012519          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVW  272 (461)
Q Consensus       195 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~  272 (461)
                      .-.+.+++.+...+....+++|++|++.|+.++|+.+....+ .....|.+.+.+ +..| |...++..++..++..+..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~  420 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVS  420 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHH
Confidence            223333334444456678899999999999999998866554 344577777755 4456 5556666666665555554


Q ss_pred             HH
Q 012519          273 LS  274 (461)
Q Consensus       273 ~~  274 (461)
                      ++
T Consensus       421 ~~  422 (432)
T PRK10406        421 LM  422 (432)
T ss_pred             HH
Confidence            44

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.32  E-value=2.8e-10  Score=107.86  Aligned_cols=168  Identities=17%  Similarity=0.214  Sum_probs=129.4

Q ss_pred             HHHHHHhhhHhhhhhhhhhcC-CCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcccccc
Q 012519          110 LCNADRVVMSVAIVPLSLAHG-WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS  188 (461)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~  188 (461)
                      +.......+....+...++.| .+....+.+.++..++-...-...+++..|+|.|+++.++.+..++=..+.+... ++
T Consensus       218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-~~  296 (400)
T PF03825_consen  218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-DP  296 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            333334445555566677777 6777888888888888899999999999999999999999999999888877762 23


Q ss_pred             HHHH----HHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCch------hH
Q 012519          189 LLAL----LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG-GFTSGNAIGLVLSPILMSQAGIF------GP  257 (461)
Q Consensus       189 ~~~l----~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~gwr------~~  257 (461)
                      .+..    +....++|+..+..+.++..++.+..|++.|+++.+++++ ..++|..+|..++|++.+++|-+      ..
T Consensus       297 ~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~  376 (400)
T PF03825_consen  297 WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAV  376 (400)
T ss_pred             cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            3332    3345679999999999999999999999999999999876 57899999999999999987744      44


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC
Q 012519          258 FVIFGLSGFLWVLVWLSATSS  278 (461)
Q Consensus       258 f~~~~~~~~~~~~~~~~~~~~  278 (461)
                      +.+.+++.++..++.+++.+|
T Consensus       377 ~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  377 FLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHhhccC
Confidence            555555555555554444444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.32  E-value=2.6e-10  Score=108.86  Aligned_cols=151  Identities=14%  Similarity=0.029  Sum_probs=113.1

Q ss_pred             hhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHHH
Q 012519          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-AADTSLLALLAMRAVV  199 (461)
Q Consensus       121 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~l~~~r~l~  199 (461)
                      ..|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .  ++.+..++..++.
T Consensus       222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~  299 (382)
T PRK10091        222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG--GMKTASLIFAFIC  299 (382)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence            345566678999999999999999999999999999999999999999988888887765543 4  5556666666777


Q ss_pred             hhhhhchhhHHH-HHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHh
Q 012519          200 GLAEGVALPAMN-NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       200 G~~~g~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      +++.....+... ....+..+++.++.+.  .+....+|..+||.+++.+.+. .+|++.+.+.+++.++........
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        300 CAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            776554444434 3444444555555543  4667889999999999999985 689999999877766654444433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.31  E-value=4.4e-09  Score=105.21  Aligned_cols=157  Identities=18%  Similarity=0.243  Sum_probs=128.2

Q ss_pred             hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHHHHHHHHHHHHHHhhccccc------cHHHH
Q 012519          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADT------SLLAL  192 (461)
Q Consensus       120 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~------~~~~l  192 (461)
                      .....+.+.+|.+.+++..+...+....-+..+++|+++|+ +|+++.++++.++..+|.++.++...+      .....
T Consensus         9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            34445566789999999999999999999999999999996 799999999999999998887765211      12346


Q ss_pred             HHHHHHHhhhhhchhhHHHHHHHhhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CchhHHHHHH
Q 012519          193 LAMRAVVGLAEGVALPAMNNMVARWFPQT---ERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIFG  262 (461)
Q Consensus       193 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------gwr~~f~~~~  262 (461)
                      +++-.+..+|.|+.-+...+...|.++++   +|-..+.++..+.++|.++++++.+++.+..       +|...|.+.+
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            67778888999999999999999999753   4778899999999999999999999887543       6999999998


Q ss_pred             HHHHHHHHHHHHhc
Q 012519          263 LSGFLWVLVWLSAT  276 (461)
Q Consensus       263 ~~~~~~~~~~~~~~  276 (461)
                      ++.++..++.+...
T Consensus       169 i~m~ia~lvf~~g~  182 (654)
T TIGR00926       169 ILMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88887776655443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.31  E-value=5.9e-11  Score=116.37  Aligned_cols=148  Identities=17%  Similarity=0.026  Sum_probs=106.9

Q ss_pred             hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcch-------HHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 012519          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK-------IIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (461)
Q Consensus       124 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (461)
                      .+.+++|.+..+.+++.+++.++..++.+++|+++||+|||       ..+.+..++.++..++.+..  ++.+..++.-
T Consensus       278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~--~~~~~~~~~~  355 (476)
T PLN00028        278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA--NSLGAAIVVM  355 (476)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc--chHHHHHHHH
Confidence            34567899999999999999999999999999999999865       23333444444444445555  6666666666


Q ss_pred             HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      ++.+++.+...+...+++.+.. +++||.+.|+...+..+|..+++.+.+ ..+..+|+..|++.+++.++..++.++.
T Consensus       356 ~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        356 ILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            6777766666666666677765 478999999988777777777766543 1123469999999988887776665554

>TIGR00896 CynX cyanate transporter

Probab=99.30  E-value=1.5e-10  Score=109.43  Aligned_cols=136  Identities=17%  Similarity=0.082  Sum_probs=109.8

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh-cchHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~  195 (461)
                      .....+|.+.++.|.+..+.+++.+.+.++..++.++.|++.||+ +||+.+.++.++.+++.++..+.  ++.+... .
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~  291 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--PMHGLWA-W  291 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHHH-H
Confidence            334456777778899999999999999999999999999999999 56777788888888887777766  4333222 4


Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ch
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IF  255 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr  255 (461)
                      -++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.++.| |.
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            567899999888888887776554 5677999999999999999999999999999876 44

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.30  E-value=4.7e-11  Score=114.95  Aligned_cols=161  Identities=14%  Similarity=0.032  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhhhhc--CCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHH-HHHHHHHHHHHHH
Q 012519          103 MLALALALCNADRVVMSVAIVPLSLAH--GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII-MAWGVALWSLATF  179 (461)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~~  179 (461)
                      ...+.+++.......+...+|.+.+++  +.+..+.++..+...++..++.++.|+++||+++|+. +....++.+++.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~  325 (412)
T TIGR02332       246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWL  325 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHH
Confidence            334444444444445566677777765  5677889999999999999999999999999997774 4444444444433


Q ss_pred             HhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHH
Q 012519          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPF  258 (461)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f  258 (461)
                      +....  ++....+++-++.++|.....+.......|.+|+++|+.++|+.+....+|..++|.+.+.+.+..| |++.|
T Consensus       326 ~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~  403 (412)
T TIGR02332       326 LASAT--DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGL  403 (412)
T ss_pred             HHHhc--CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhH
Confidence            32222  3322222222333344333334444555778899999999999999999999999999999999875 99999


Q ss_pred             HHHHHHH
Q 012519          259 VIFGLSG  265 (461)
Q Consensus       259 ~~~~~~~  265 (461)
                      ++.++..
T Consensus       404 ~~~~~~~  410 (412)
T TIGR02332       404 WFVAALL  410 (412)
T ss_pred             HHHHHHH
Confidence            8776643

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.30  E-value=3.5e-11  Score=115.71  Aligned_cols=161  Identities=19%  Similarity=0.137  Sum_probs=131.0

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh---c--chHHHHHHHHHHHHHHHHhhccc--cccH
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY---G--GKIIMAWGVALWSLATFLTPWAA--DTSL  189 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~---G--rr~~~~~~~~~~~i~~~~~~~~~--~~~~  189 (461)
                      ......+.+.+++|+++++.....+...+...+ .++.|.++|-+   |  ||+-++++.++..++.+..+..+  ..+.
T Consensus         8 ~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen    8 SRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            344567888999999999999999999998865 77889999975   3  55677777777766666555542  1356


Q ss_pred             HHHHHHHHHHhhhhhchhhHHHHHHHhhcC--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 012519          190 LALLAMRAVVGLAEGVALPAMNNMVARWFP--QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (461)
Q Consensus       190 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  267 (461)
                      ....+.-++..+|.+....++-+++.|...  ++.||...+.......+|.+++..++|.+.+..+++..|.+.+++.++
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l  166 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLL  166 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHH
Confidence            677777788899999999999999999873  344888899999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhcCC
Q 012519          268 WVLVWLSATSS  278 (461)
Q Consensus       268 ~~~~~~~~~~~  278 (461)
                      ..+..++..+|
T Consensus       167 ~~~~~~~~~~e  177 (433)
T PF03092_consen  167 MLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHhhhh
Confidence            77777777665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00898 2A0119 cation transport protein

Probab=99.29  E-value=2e-10  Score=114.07  Aligned_cols=148  Identities=19%  Similarity=0.110  Sum_probs=114.4

Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhc
Q 012519          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (461)
Q Consensus       126 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  205 (461)
                      .++++.+..   +......+....+.++.+++.||+|||+.+.++.++.+++.++..+.+..+.+..++.-++.+++.+.
T Consensus       350 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (505)
T TIGR00898       350 LGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITS  426 (505)
T ss_pred             ccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            344454432   33345566777888899999999999999999999999888887776222235556666777787787


Q ss_pred             hhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCC
Q 012519          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (461)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  279 (461)
                      .++..+.+..|.+|++.|+.++|+.+....+|.+++|.+.+ + ...++..++++.++..++..++.++ .||+
T Consensus       427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet  497 (505)
T TIGR00898       427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPET  497 (505)
T ss_pred             HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCC
Confidence            88889999999999999999999999999999999999988 4 4456778888888877776666554 4554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.27  E-value=4.1e-10  Score=107.46  Aligned_cols=175  Identities=16%  Similarity=0.105  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh
Q 012519          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (461)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  182 (461)
                      .+++.+++.+.....++..+|.+.++ ..+.........+..+...+..+++|+++||+|+|+++.++.+...++.....
T Consensus       256 llslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~  334 (462)
T PRK15034        256 LLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLF  334 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence            33444444444444455555555444 22333333334455677888999999999999999999999887777664322


Q ss_pred             cc-c---cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCc---------------------hhhhHHHHHHHHHHHHH
Q 012519          183 WA-A---DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ---------------------TERARAVAIAMGGFTSG  237 (461)
Q Consensus       183 ~~-~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~---------------------~~r~~~~~~~~~~~~~G  237 (461)
                      .. +   ..+++.+.+.-+...++.|......+.++.+++|+                     ++-|.+.|+..+...+|
T Consensus       335 l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~G  414 (462)
T PRK15034        335 LTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVG  414 (462)
T ss_pred             HHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcc
Confidence            22 1   13567777766666666777777888888888874                     25688999999999999


Q ss_pred             HHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHhcCC
Q 012519          238 NAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSATSS  278 (461)
Q Consensus       238 ~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~  278 (461)
                      ..+-|.+.+...+..| +...|++..+..+++.++.+...-+
T Consensus       415 gf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        415 GFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             cchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999988788777655 8888988888888777766665433

>PRK09848 glucuronide transporter; Provisional

Probab=99.26  E-value=4.5e-10  Score=109.61  Aligned_cols=138  Identities=19%  Similarity=0.151  Sum_probs=110.1

Q ss_pred             hhHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q 012519          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (461)
Q Consensus       117 ~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~  195 (461)
                      ......+.+. +.+|.+....++......++..++.++++++.||+|+|+++.++.++..++.++..+.+.++++.+++.
T Consensus       246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  325 (448)
T PRK09848        246 AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA  325 (448)
T ss_pred             HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence            3333455443 446766555555555556778889999999999999999999999998888877766533467778888


Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcCch-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFPQT-------ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      .++.|+|.+...+...++.+|..|.+       ++|...++.+....+|..+|+.+.+.+.+..|+
T Consensus       326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88999999999999999999988754       359999999999999999999999998877665

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.26  E-value=1.7e-10  Score=105.33  Aligned_cols=172  Identities=16%  Similarity=0.181  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      ..+++.-..+.++.+. .....-..-.+++|++..+..++.....+..+++++++|++.||+|.|+++.++.++..+.++
T Consensus       255 ~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~  333 (438)
T COG2270         255 VLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL  333 (438)
T ss_pred             HHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH
Confidence            3344444444444432 222223334459999999999999999999999999999999999999999999999999988


Q ss_pred             HhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHH
Q 012519          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPF  258 (461)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f  258 (461)
                      ...+.  ..-..+.++..+.|+..|..+..+.++.++.+|++|-++.+|+++.....+..+||.+.+.+.+..| -|..+
T Consensus       334 ~~~~~--~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~  411 (438)
T COG2270         334 YLIFL--EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV  411 (438)
T ss_pred             HHHHc--cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence            87777  6666777788999999999999999999999999999999999999999999999999999988766 67776


Q ss_pred             HHHHHHHHHHHHHHHH
Q 012519          259 VIFGLSGFLWVLVWLS  274 (461)
Q Consensus       259 ~~~~~~~~~~~~~~~~  274 (461)
                      ....++..+.++..+.
T Consensus       412 ~~i~vll~iGl~~L~~  427 (438)
T COG2270         412 LSIIVLLLIGLLLLLR  427 (438)
T ss_pred             HHHHHHHHhhHhhEEe
Confidence            6666655554444333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.25  E-value=2.4e-10  Score=104.27  Aligned_cols=175  Identities=17%  Similarity=0.110  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      .+.+++.++..+.....++..+|. +.++|+.+..++|.....+.+...+..+.+|+++||+|.+|++.+....++++..
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~  299 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA  299 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence            344555666655655566666665 5667999999999999999999999999999999999999999999999988888


Q ss_pred             Hhhccc-----cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Q 012519          180 LTPWAA-----DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-  253 (461)
Q Consensus       180 ~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-  253 (461)
                      +..+..     ..+....++.-+..++..|.-...++.++..++| ++-|.+.|+.....++|...-|..-+...+..| 
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            877662     1234444444445555555555567788888885 688999999999999999999999999988888 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhc
Q 012519          254 IFGPFVIFGLSGFLWVLVWLSAT  276 (461)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~  276 (461)
                      +...|++.....+++.+..+...
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888777655543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.23  E-value=3.5e-10  Score=107.48  Aligned_cols=182  Identities=16%  Similarity=0.117  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  180 (461)
                      ...+.+.......+..........+-++-|++..++.+......+...+..+++..+.||+|||+.++.+..+..+..++
T Consensus       272 ~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~  351 (485)
T KOG0569|consen  272 LIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL  351 (485)
T ss_pred             HHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            33333333334444455666667788888999999999999999999999999999999999999999999999888777


Q ss_pred             hhccc--cccH--H---HHHHHHHHHhhhhh-chhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012519          181 TPWAA--DTSL--L---ALLAMRAVVGLAEG-VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (461)
Q Consensus       181 ~~~~~--~~~~--~---~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~  252 (461)
                      .....  ....  |   ..+++.++..++.+ +.-|...-+.+|.+|++.|+.++++......+..++-...-..+.+.+
T Consensus       352 ~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~  431 (485)
T KOG0569|consen  352 MSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI  431 (485)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55441  0111  1   12334444433333 246788889999999999999999999999999888888777777777


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 012519          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRH  283 (461)
Q Consensus       253 gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~  283 (461)
                      |- +.|+...+++++..+..++.+||++.+.
T Consensus       432 g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  432 GP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             cc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            75 7888889999999999999998886543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.23  E-value=2.8e-10  Score=124.36  Aligned_cols=143  Identities=17%  Similarity=0.193  Sum_probs=123.0

Q ss_pred             hhhhhhcCCCch-hHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhh
Q 012519          123 VPLSLAHGWSRS-FSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL  201 (461)
Q Consensus       123 ~~i~~~~~~s~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~  201 (461)
                      +.+.+.+|.+.. +.+++.+...++.+++.+++|++.||+++|+++.++.++.+++.++..+.  .+.+.++++.++.|+
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLFFLFGF  334 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH
Confidence            345567899998 99999999999999999999999999999999999999888888888888  888888899999999


Q ss_pred             hhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCchhHHHHHHHHHHH
Q 012519          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGIFGPFVIFGLSGFL  267 (461)
Q Consensus       202 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gwr~~f~~~~~~~~~  267 (461)
                      +.++..+...+++.+..|+++||+++++.+....+|.++++.+++.+.. .+++...|++.+.+.++
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888888877654 23455666665554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.22  E-value=3.6e-10  Score=111.63  Aligned_cols=134  Identities=15%  Similarity=0.229  Sum_probs=114.8

Q ss_pred             Hhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc--cccccHHHHHHH
Q 012519          119 SVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW--AADTSLLALLAM  195 (461)
Q Consensus       119 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~~  195 (461)
                      ....|.+. +.+|.++.+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+  .+..+++.++..
T Consensus       275 ~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (485)
T TIGR00711       275 FYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALP  354 (485)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            34455544 457999999999999999999999999999999999999999999988888877663  222467777788


Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~  252 (461)
                      .++.|+|.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++.
T Consensus       355 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       355 QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999888888888888899999999999999999999999999999987753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10133 L-fucose transporter; Provisional

Probab=99.21  E-value=1.6e-09  Score=104.90  Aligned_cols=141  Identities=11%  Similarity=0.100  Sum_probs=115.3

Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhc
Q 012519          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (461)
Q Consensus       126 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  205 (461)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.  ++.+ .+..-++.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHV-GLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CChH-HHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999988887777766666  5543 34556789999999


Q ss_pred             hhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHH
Q 012519          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~  271 (461)
                      .+|..++...+..| ++.+.+.++... ..+|..++|++.+.+.+..| -|..|++..+..+.....
T Consensus       364 i~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        364 QYPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            99999999999986 456777777764 44788999999999999887 788888666555544433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.20  E-value=1.2e-09  Score=104.41  Aligned_cols=139  Identities=14%  Similarity=0.160  Sum_probs=103.8

Q ss_pred             hhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccc---cccHHHHHHH
Q 012519          120 VAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA---DTSLLALLAM  195 (461)
Q Consensus       120 ~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~~~l~~~  195 (461)
                      ...|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++..+..   .++.+.+++.
T Consensus       227 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (385)
T TIGR00710       227 SGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGP  306 (385)
T ss_pred             HcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            33454 4457899999999999999999999999999999999999999888888777766655431   1234556667


Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhHHHH
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFVI  260 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~gwr~~f~~  260 (461)
                      .++.|++.+...+.......|..| ++|+++.++.+..... |.+.++.+ +.+.+..+|...+..
T Consensus       307 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       307 MMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV-SLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH-HhccccChHHHHHHH
Confidence            788999999888998899999886 6899999998877655 55555554 444444344443333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.19  E-value=2.3e-09  Score=102.77  Aligned_cols=135  Identities=16%  Similarity=0.070  Sum_probs=97.8

Q ss_pred             hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh
Q 012519          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEG  204 (461)
Q Consensus       125 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g  204 (461)
                      +.+++|.+..+.+.+.+...++..++.++.+++.||+|||+++.++..+..++.++..+.  ++.+..+..-++.++|.+
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~  307 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS--PSHAVSLFGITLICAGFS  307 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999988888887776  555544444444444444


Q ss_pred             chhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 012519          205 VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGF  266 (461)
Q Consensus       205 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~  266 (461)
                      ...+.  ....+..|.++|+   +.......++..+|+.+++++.+..|+.....+.+.+.+
T Consensus       308 ~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~  364 (392)
T PRK10473        308 VGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILIA  364 (392)
T ss_pred             HHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            33333  2334455555553   444455667888888888888888888765555554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.19  E-value=4.7e-10  Score=110.10  Aligned_cols=172  Identities=14%  Similarity=0.075  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhh-hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHH--------HHHHHH
Q 012519          102 SMLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII--------MAWGVA  172 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~--------~~~~~~  172 (461)
                      ....+..+........+...+|.+ .+.+|.+..+.+++.++..++..++.++.|+++||+++|+.        +..+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  343 (465)
T TIGR00894       264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG  343 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            334444444444444444556654 56689999999999999999999999999999999875421        111111


Q ss_pred             HH--HHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012519          173 LW--SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (461)
Q Consensus       173 ~~--~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~  250 (461)
                      ..  ++..+..... ..+.+..+++-++.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+.+
T Consensus       344 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~  421 (465)
T TIGR00894       344 GLGPGIFAYALPYL-SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS  421 (465)
T ss_pred             HHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence            11  1111112221 1344444555555566555555555555667775 589999999999999999999999998876


Q ss_pred             hc---CchhHHHHHHHHHHHHHHHHHHh
Q 012519          251 QA---GIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       251 ~~---gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      ..   +|+..|++.++..++..++..++
T Consensus       422 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       422 QDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            43   38889999888877766655544

>PRK09669 putative symporter YagG; Provisional

Probab=99.17  E-value=1.5e-09  Score=105.79  Aligned_cols=133  Identities=8%  Similarity=0.099  Sum_probs=101.3

Q ss_pred             hhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhh
Q 012519          123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLA  202 (461)
Q Consensus       123 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~  202 (461)
                      ..+.++.--+....+.+.....+...++.+++++++||+|+|+.+.++.++..++.+...+.+.++.+.+++..++.|++
T Consensus       253 ~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~  332 (444)
T PRK09669        253 LYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFI  332 (444)
T ss_pred             heeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence            34433332234444556667778888899999999999999999998887666544433332226788888888999999


Q ss_pred             hhchhhHHHHHHHhhcCc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 012519          203 EGVALPAMNNMVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (461)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr  255 (461)
                      .+...+...++++|..+.       ++.|...+.......+|..+|+.+++.+.+..|+.
T Consensus       333 ~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        333 QNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999998852       23467788999999999999999999998877763

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.16  E-value=2.5e-09  Score=104.95  Aligned_cols=139  Identities=14%  Similarity=-0.010  Sum_probs=108.0

Q ss_pred             hhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc---cccccHHHH
Q 012519          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---AADTSLLAL  192 (461)
Q Consensus       116 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~l  192 (461)
                      .......+.+.+....+....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+   ....+.+.+
T Consensus       248 ~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (473)
T PRK10429        248 NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLI  327 (473)
T ss_pred             HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHH
Confidence            34444445555554445667778888878899999999999999999999999888876666554332   222567778


Q ss_pred             HHHHHHHhhhhhchhhHHHHHHHhhcC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          193 LAMRAVVGLAEGVALPAMNNMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       193 ~~~r~l~G~~~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      ++.-++.|++.+...+...++++|..+       .++.|..++.......+|..+++.+.+.+.+..|+
T Consensus       328 ~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        328 VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888889999999999999999999965       23346689999999999999999999999887665

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.16  E-value=4.9e-10  Score=105.58  Aligned_cols=126  Identities=19%  Similarity=0.238  Sum_probs=108.3

Q ss_pred             hhHhhhhhh-hhhcCCC-chhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccc-cccHHHHH
Q 012519          117 VMSVAIVPL-SLAHGWS-RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-DTSLLALL  193 (461)
Q Consensus       117 ~~~~~~~~i-~~~~~~s-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~l~  193 (461)
                      ......|.+ .+++|.+ ..+.+++.+...++..++.++.|++.||+|+|+...+......++.+...+.. .++....+
T Consensus       224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (352)
T PF07690_consen  224 GFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLI  303 (352)
T ss_dssp             HHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHH
T ss_pred             HhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            355556664 8889999 79999999999999999999999999999998888887777777777666551 13557777


Q ss_pred             HHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHH
Q 012519          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (461)
Q Consensus       194 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  242 (461)
                      +.-++.|++.+...+....++.|.+|+++||++.++.+...++|..+||
T Consensus       304 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  304 IALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7889999999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.16  E-value=2.2e-09  Score=102.65  Aligned_cols=143  Identities=18%  Similarity=0.143  Sum_probs=114.3

Q ss_pred             hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh
Q 012519          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE  203 (461)
Q Consensus       124 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~  203 (461)
                      .+.+.+|.++.+.|++.+.+.++..++++..+++.||+++|+++..+.. .++..++.++.  ++++..++..++.|++.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~--~~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ--HSLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH--hHHHHHHHHHHHHHHhh
Confidence            4556689999999999999999999999999999999999998888754 34444455556  77887788888999999


Q ss_pred             hchhhHHHHHHHhhcCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 012519          204 GVALPAMNNMVARWFPQTE-RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (461)
Q Consensus       204 g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  270 (461)
                      +...+...+.+.+..|++. +|++.++.+...++|..++..+.+.+ ...|-|..+.+.+...++...
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  374 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALA  374 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence            9888888888888766554 79999999999999999999998865 566766666664444444333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.15  E-value=2.5e-07  Score=88.60  Aligned_cols=275  Identities=11%  Similarity=-0.020  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCC-----CchhHHHHHHHHHHHHHHh-HhhhhhhhhhhcchHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGW-----SRSFSGIVQSSFLWGYLVS-PIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----s~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      ..++.+.+..|+..+..+..    -++++.+.+     +.+.+.++-+...+..++. .++.+++++|++|++++-+...
T Consensus         7 ~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            34444455555544444433    444555544     4478999999888887777 8999999999999999888887


Q ss_pred             HHHHHHHHhhcccc--c---------------------------cHHHHHHHHHHHhhhhhchhh-HHHHHHHhhcCchh
Q 012519          173 LWSLATFLTPWAAD--T---------------------------SLLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTE  222 (461)
Q Consensus       173 ~~~i~~~~~~~~~~--~---------------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~  222 (461)
                      .+....+++++...  +                           +.|...+..+..-+-...... .-..+++|.++.++
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            77777666555410  1                           123333444444444444444 77888999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-Cch----hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhH
Q 012519          223 RARAVAIAMGGFTSGNAIGLVLSPILMSQ-------A-GIF----GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE  290 (461)
Q Consensus       223 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~-gwr----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (461)
                      -.|..++...+.++|.++++.+..++.+.       . .|.    ..+.+.++.+++...+.....++.. ..+.....+
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~  241 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVL-TDPRSYNPA  241 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCccccchh
Confidence            99999999999999999999999888732       1 242    2333334343443333333322221 111100000


Q ss_pred             HHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc----cchhh
Q 012519          291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFS  366 (461)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~  366 (461)
                      .       +    .++++.+......++.++++|.++.+++...+++.....+..-.-..+.+.+- ++.+    .|.+.
T Consensus       242 ~-------~----~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~  309 (472)
T TIGR00769       242 L-------K----EKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFS  309 (472)
T ss_pred             h-------c----cccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Confidence            0       0    01112233445678899999999998888888877777776655555665442 3322    22333


Q ss_pred             hhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          367 AVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       367 ~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      ...++..++..++.+++.+|+|-+
T Consensus       310 ~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       310 TWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHH
Confidence            444455555566668888888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.15  E-value=1.2e-09  Score=107.87  Aligned_cols=132  Identities=22%  Similarity=0.279  Sum_probs=113.5

Q ss_pred             hhhh-hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcc-ccccHHHHHHHHH
Q 012519          120 VAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAMRA  197 (461)
Q Consensus       120 ~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~r~  197 (461)
                      ...| .+++.+|.++.+.|+....+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+. ..++.+...+..+
T Consensus       280 ~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  359 (495)
T PRK14995        280 LLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMA  359 (495)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            3444 4555689999999999999999999999999999999999999999988888877655432 1246667777889


Q ss_pred             HHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012519          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (461)
Q Consensus       198 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  251 (461)
                      +.|+|.|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.++
T Consensus       360 l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        360 LLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998999999999999999999999999999999999999988653

>TIGR00901 2A0125 AmpG-related permease

Probab=99.15  E-value=4.7e-10  Score=106.03  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=97.6

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHH-HHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcc--cc-------
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFL-WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--AD-------  186 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~-------  186 (461)
                      ......|.+.+++|.+..+++.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.  ..       
T Consensus       227 ~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (356)
T TIGR00901       227 AATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITF  306 (356)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence            4444556666669999999999888766 6788999999999999999999998888887776654432  11       


Q ss_pred             ccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHH
Q 012519          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFT  235 (461)
Q Consensus       187 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  235 (461)
                      ++.+.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            2457788888999999999999999999999999999999999887654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.15  E-value=9.7e-10  Score=119.83  Aligned_cols=149  Identities=15%  Similarity=0.117  Sum_probs=118.7

Q ss_pred             hhhhhh-hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcc--------------
Q 012519          120 VAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--------------  184 (461)
Q Consensus       120 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--------------  184 (461)
                      ..+|.+ .+.+|.+..+.|++.+.+.++..++.++.|++.|+.++++.+..+.++.+++.+..++.              
T Consensus       246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  325 (1140)
T PRK06814        246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI  325 (1140)
T ss_pred             HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence            345554 45579999999999999999999999999999998887776666666555554433321              


Q ss_pred             ----ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCchhHHH
Q 012519          185 ----ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGIFGPFV  259 (461)
Q Consensus       185 ----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gwr~~f~  259 (461)
                          ..++.|.++++.++.|++.+...+...+++.+.+|+++||+++|+.+....+|..+|+++++.+.+ ..++...|+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~  405 (1140)
T PRK06814        326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL  405 (1140)
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence                115677788889999999999999999999999999999999999999999999999999998874 456677666


Q ss_pred             HHHHHHHHH
Q 012519          260 IFGLSGFLW  268 (461)
Q Consensus       260 ~~~~~~~~~  268 (461)
                      +.+++.++.
T Consensus       406 ~~~~~~~~~  414 (1140)
T PRK06814        406 FIALANLIV  414 (1140)
T ss_pred             HHHHHHHHH
Confidence            655544443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.15  E-value=1.4e-09  Score=100.03  Aligned_cols=261  Identities=16%  Similarity=0.151  Sum_probs=158.2

Q ss_pred             HHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh----hcchHHHH-HHHHHHHHHHHHhhccccc
Q 012519          113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKIIMA-WGVALWSLATFLTPWAADT  187 (461)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~-~~~~~~~i~~~~~~~~~~~  187 (461)
                      +.+..--...+++.+++|++....+.+..+.-+...+.+++.|..+||    |||||.++ .+.+...++.++.+++  .
T Consensus        46 f~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~a--a  123 (498)
T KOG0637|consen   46 FGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYA--A  123 (498)
T ss_pred             HHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhH--h
Confidence            333344456777888999999999999999999999999999999994    89887554 4556666777777776  3


Q ss_pred             cH-----------------HHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          188 SL-----------------LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERAR-AVAIAMGGFTSGNAIGLVLSPILM  249 (461)
Q Consensus       188 ~~-----------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l~  249 (461)
                      ++                 .+++++--+.-++.-.....+-+++.|...++++.+ +++++....++|+.+|..+++++ 
T Consensus       124 Dig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~-  202 (498)
T KOG0637|consen  124 DIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL-  202 (498)
T ss_pred             hhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc-
Confidence            32                 233444445555666778889999999997766666 99999999999999999988744 


Q ss_pred             hhcCchhH--HHHHHHHHHHHHHHHH-------HhcCCC------CCCCCCcchh-HHHHHHHhhcCccccCCCCCCCCC
Q 012519          250 SQAGIFGP--FVIFGLSGFLWVLVWL-------SATSST------PDRHPQISKY-ELEYILREKQKPLLMGNKHKPATV  313 (461)
Q Consensus       250 ~~~gwr~~--f~~~~~~~~~~~~~~~-------~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  313 (461)
                         +|+-.  |...-.+-+.+..+-.       +...++      ++++++..+. +.+             ....+...
T Consensus       203 ---~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~~-------------~~~~~~~~  266 (498)
T KOG0637|consen  203 ---GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTAR-------------SKSSKLPF  266 (498)
T ss_pred             ---CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCccccc-------------ccccCcch
Confidence               54432  2222221111111111       111111      1111100000 000             00000000


Q ss_pred             ChhHHHHh--cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-hhCCCccc----------------cchhhhhhHHHHH
Q 012519          314 IPPFRRLL--SKMPTWSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQ----------------ASWFSAVPWSVMA  374 (461)
Q Consensus       314 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~----------------~~~~~~~~~~~~~  374 (461)
                      .......+  ..|..+.+++...+.+.+.+.+..|.+.++-+ .|+-++..                -.+=+.+..+...
T Consensus       267 ~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lg  346 (498)
T KOG0637|consen  267 LLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLG  346 (498)
T ss_pred             HHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHH
Confidence            00111111  23678889999999999999888877777654 34333221                1223344555566


Q ss_pred             HHHHHHHHhhhhHhhcCc
Q 012519          375 FTGYLGGLLSDMLIQRGT  392 (461)
Q Consensus       375 i~~~~~g~l~dr~~~~~~  392 (461)
                      +.+.+.-++.+|+|-|++
T Consensus       347 i~S~~~~~l~~~~g~r~~  364 (498)
T KOG0637|consen  347 IYSLLVEKLSRKFGTRKR  364 (498)
T ss_pred             HHHHHHHHHHHhcCcceE
Confidence            777788888899985543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.14  E-value=3.6e-09  Score=99.90  Aligned_cols=162  Identities=12%  Similarity=0.044  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcc---hHHHH-HHHHHHHHHHH
Q 012519          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG---KIIMA-WGVALWSLATF  179 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---r~~~~-~~~~~~~i~~~  179 (461)
                      +.+..++.......+..-+|.+.++.|.+.. .+...++..+...++   .++++||.+|   |+... ...++.++...
T Consensus       197 ~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~  272 (368)
T TIGR00903       197 IGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFL  272 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3333444444444555567777777777754 555555555544444   4777777654   33333 24444444444


Q ss_pred             HhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 012519          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (461)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~  259 (461)
                      ..++.  .+.+..++.-++.|++....++...++.+|.+|++.|+++.|+.+....+|..++|++.+.+..  |-+..|.
T Consensus       273 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~  348 (368)
T TIGR00903       273 ALAFE--LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFT  348 (368)
T ss_pred             HHHHc--cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence            55555  4555555556677777777778888999999999999999999999999999999999887773  6777888


Q ss_pred             HHHHHHHHHHHHHH
Q 012519          260 IFGLSGFLWVLVWL  273 (461)
Q Consensus       260 ~~~~~~~~~~~~~~  273 (461)
                      +.+++.++..+..+
T Consensus       349 ~~~~~~~i~~~~~~  362 (368)
T TIGR00903       349 FLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877777666554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11043 putative transporter; Provisional

Probab=99.14  E-value=5.9e-09  Score=100.24  Aligned_cols=136  Identities=18%  Similarity=0.232  Sum_probs=104.4

Q ss_pred             hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH---hhccccccHHHHHHHH
Q 012519          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL---TPWAADTSLLALLAMR  196 (461)
Q Consensus       120 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~~~l~~~r  196 (461)
                      ...|.+.+++|.+..+.++....+.++..++.+..+++.||+|+|+.+....++.+++.+.   ......++++.+++..
T Consensus       224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (401)
T PRK11043        224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF  303 (401)
T ss_pred             HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            3456677788999999999988889999999999999999999998766655554444332   2221115666666777


Q ss_pred             HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 012519          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~  256 (461)
                      .+.|++.+...+...+...|..| ++||++.++.+.....+..+++.+.+.+.+...-..
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        304 CVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            88899989889988888888875 689999999999888888888888888876433333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.13  E-value=4.9e-10  Score=99.83  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=100.3

Q ss_pred             HHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHH--HHHHHHHHHhhhhhchhhHHHHHHHhhcCc
Q 012519          143 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL--ALLAMRAVVGLAEGVALPAMNNMVARWFPQ  220 (461)
Q Consensus       143 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  220 (461)
                      ..+.-.-|.++.+++.||+|||++|..+.+++++..++...+..+|..  ++..+|++.-.    .+.+.+.|..|.+|.
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg----~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG----AFQVAYVYTPEVYPT  465 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc----hheEEEEecCcccch
Confidence            345556788899999999999999999999999999887776334433  34445665533    455678899999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCC
Q 012519          221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (461)
Q Consensus       221 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  279 (461)
                      +-|+...|.-+.+.-+|+++.|+++  +.....-..+..+.+.+.++..+...++.-|+
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999999999998  43334455666777777777777666664343

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.11  E-value=6.6e-09  Score=99.02  Aligned_cols=121  Identities=17%  Similarity=0.107  Sum_probs=88.7

Q ss_pred             hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh---hccccccHHHHHHHHHHHh
Q 012519          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMRAVVG  200 (461)
Q Consensus       124 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~l~~~r~l~G  200 (461)
                      .+.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..+..+..   ... ..+++.+.++-.+.+
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  298 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-DLGFWALVVGVAAFV  298 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHH
Confidence            3456689999999999999999999999999999999999999988887654433222   222 135566555555555


Q ss_pred             hhhhchhhHHHHHHHhhcCchhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 012519          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGG-FTSGNAIGLVLSP  246 (461)
Q Consensus       201 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~  246 (461)
                      .+.+........++.|..| ++++++.++.... ..+|..+++.+++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        299 GCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5556666667777888776 7899999987654 4567777776654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.11  E-value=6.5e-09  Score=95.87  Aligned_cols=158  Identities=31%  Similarity=0.493  Sum_probs=130.4

Q ss_pred             HHHHHHHhhhHhhhhhhhhhcCCCc--hhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcccc
Q 012519          109 ALCNADRVVMSVAIVPLSLAHGWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (461)
Q Consensus       109 ~~~~~~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~  186 (461)
                      +....+........+.+..+++.+.  .+.++..+.+.++..++.++.|++.||+|||+.+..+.....++.++.++.  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--   89 (338)
T COG0477          12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--   89 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC--
Confidence            3333555666777888888887666  589999999999999999999999999999998888887766666777777  


Q ss_pred             cc--HHHHHHHHHHHhhhhhchhhHHHHHHHhhcCc-hhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhh--cCchhHHHH
Q 012519          187 TS--LLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-TERARAVAIAMG-GFTSGNAIGLVLSPILMSQ--AGIFGPFVI  260 (461)
Q Consensus       187 ~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~--~gwr~~f~~  260 (461)
                      .+  .+.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|.+
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL  169 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            55  89999999999999999999999999999987 689999999888 6888999999888777654  579997776


Q ss_pred             HHHHHHHH
Q 012519          261 FGLSGFLW  268 (461)
Q Consensus       261 ~~~~~~~~  268 (461)
                      ........
T Consensus       170 ~~~~~~~~  177 (338)
T COG0477         170 AALLGLLL  177 (338)
T ss_pred             HHHHHHHH
Confidence            66655443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.10  E-value=1.6e-09  Score=93.11  Aligned_cols=160  Identities=14%  Similarity=0.090  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHH-HH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS-LA  177 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~-i~  177 (461)
                      .++..++..+.+..+.....+  -..++++||+|+..++-+.+....-.++.+++.|.++||+|++...+.+..+.. ++
T Consensus       267 w~~~iicv~yyva~fPFi~lg--~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~  344 (459)
T KOG4686|consen  267 WVLVIICVLYYVAWFPFITLG--PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG  344 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhhhh--HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH
Confidence            344555555555544433333  345788999999999999998888888999999999999999976666554444 44


Q ss_pred             HHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---c
Q 012519          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---I  254 (461)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g---w  254 (461)
                      -....+.    ++.=+.+..+.|+............++...|+++.|++.|..+...++|..+-|++++.+.++-|   |
T Consensus       345 H~~l~Ft----~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~  420 (459)
T KOG4686|consen  345 HSGLFFT----FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN  420 (459)
T ss_pred             hhhHHhh----hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence            4443333    33334566788888777766677888899999999999999999999999999999999988655   5


Q ss_pred             hhHHHHHHHH
Q 012519          255 FGPFVIFGLS  264 (461)
Q Consensus       255 r~~f~~~~~~  264 (461)
                      --.|.+....
T Consensus       421 le~ffl~~~~  430 (459)
T KOG4686|consen  421 LEAFFLIIGL  430 (459)
T ss_pred             HHHHHHHHHH
Confidence            4455544333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.09  E-value=2.6e-09  Score=103.59  Aligned_cols=149  Identities=15%  Similarity=0.090  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcccc
Q 012519          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (461)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~  186 (461)
                      ..++............+.+.++.--++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~  312 (428)
T PF13347_consen  233 AFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP  312 (428)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence            33334444445555556555554334477888889999999999999999999999999999999999999999888832


Q ss_pred             ccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 012519          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (461)
Q Consensus       187 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr  255 (461)
                      +|.+.+++.-++.|++.+..+....++++|..+.       ++.|..++..+....+|..+++.+.+.+.+..|+.
T Consensus       313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            4999999999999999999999999999999863       33589999999999999999999999888766543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.06  E-value=1.7e-08  Score=98.72  Aligned_cols=140  Identities=16%  Similarity=0.039  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHhHhhhhh----hhhh-hcchHHH--HHHHHHHHHHHHHhhcc-------ccccHHHHHHHHHHHhh
Q 012519          136 SGIVQSSFLWGYLVSPIAGGT----LVDY-YGGKIIM--AWGVALWSLATFLTPWA-------ADTSLLALLAMRAVVGL  201 (461)
Q Consensus       136 ~~~~~s~~~~~~~~~~~~~g~----l~dr-~Grr~~~--~~~~~~~~i~~~~~~~~-------~~~~~~~l~~~r~l~G~  201 (461)
                      .+++.+...+...+.+++..+    +.+| .+.+...  .+|+++.+++.+..++.       ...|+|+++...++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            778889898888888888664    4444 2333333  77888888887776641       01689999999999999


Q ss_pred             hhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       202 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      |.....|...+++.+..|++.||+++|++.....+|..+++.+.....+..+|...|...++..++..++.++.
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888777789998988888777766665554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.04  E-value=1.3e-08  Score=86.83  Aligned_cols=313  Identities=14%  Similarity=0.064  Sum_probs=172.2

Q ss_pred             HHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHH
Q 012519          113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (461)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l  192 (461)
                      .....-+|..-.+.+.++....++|.+..+..-..++...+.|-++|+-|||+.-+.-++...++++- -.+  ++|-.+
T Consensus        51 AgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhS--pqYkVL  127 (454)
T KOG4332|consen   51 AGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHS--PQYKVL  127 (454)
T ss_pred             hhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcC--CceEEE
Confidence            33445566777788889999999999998888889999999999999999999765555555444432 234  899999


Q ss_pred             HHHHHHHhhhhhchhhHHHHH-HHhhcCchhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHhhc--CchhHHHHH
Q 012519          193 LAMRAVVGLAEGVALPAMNNM-VARWFPQTERARAVAIAM--------GGFTSGNAIGLVLSPILMSQA--GIFGPFVIF  261 (461)
Q Consensus       193 ~~~r~l~G~~~g~~~~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~  261 (461)
                      +++|++.|+..+....+.-++ +.|..  ++|+.-.-+..        .+..+=.+++.+.+..+.+.+  |--.+|-..
T Consensus       128 mVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAA  205 (454)
T KOG4332|consen  128 MVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAA  205 (454)
T ss_pred             eehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHH
Confidence            999999999999888887776 45554  34443322222        223333445555556666654  345566544


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (461)
                      +.+..+...+.+.-..|.-.+.     .+.+....               ......+.+..++++..+..+..+.-...+
T Consensus       206 acfLaigmAvil~~W~ENygdp-----s~~kdllt---------------qf~gaa~aiaSD~ki~LLG~iqsLFE~smy  265 (454)
T KOG4332|consen  206 ACFLAIGMAVILSSWSENYGDP-----SENKDLLT---------------QFKGAARAIASDEKIALLGAIQSLFEGSMY  265 (454)
T ss_pred             HHHHHHHHHHHHhhhhhccCCh-----hhhHHHHH---------------HhhHhHHHHhcchHHHHHHHHHHHHhhhhh
Confidence            4433333333322211111110     00000000               011123345566666666555555555544


Q ss_pred             HHH-HhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhc--
Q 012519          342 VIL-SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA--  418 (461)
Q Consensus       342 ~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  418 (461)
                      .+. .|.|. +..  +-...--|.+++.+.+..++|+-+..++..|-..+   .-..  ..+.+.....++.+.+...  
T Consensus       266 tFVFLWTPa-Lsp--n~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~---ve~y--mqivf~vs~a~l~Lpilt~~v  337 (454)
T KOG4332|consen  266 TFVFLWTPA-LSP--NDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPK---VESY--MQIVFLVSIAALLLPILTSSV  337 (454)
T ss_pred             eeeeeeccc-CCC--CcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcc---cchH--HHHHHHHHHHHHHHHHHHhcc
Confidence            443 33332 221  11122346777777677777666655554443322   1111  1111111122222222222  


Q ss_pred             c---ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccc-cccc
Q 012519          419 A---KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQY-SGVL  458 (461)
Q Consensus       419 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~  458 (461)
                      .   .+....++.+++.-.+.|..++...-+-....|+. |+++
T Consensus       338 sP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearsti  381 (454)
T KOG4332|consen  338 SPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTI  381 (454)
T ss_pred             CCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhh
Confidence            1   12333455566666777788887777777777753 5554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.01  E-value=2e-07  Score=88.26  Aligned_cols=288  Identities=13%  Similarity=-0.002  Sum_probs=167.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhhhcCC-CchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSLAHGW-SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      ...+....++...+.-++....+.+..+..- +---.+...-.-.+..++.++..|.+.||..|.+++..+.+.--++..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            3456778888888888888888877777642 333344445555677778889999999999999987776554433222


Q ss_pred             Hh----h--ccccc----cHHHHHHH---HHHHhhhhhc-hhhHHHHHHHhhc------CchhhhHHHHHHHHHHHHHHH
Q 012519          180 LT----P--WAADT----SLLALLAM---RAVVGLAEGV-ALPAMNNMVARWF------PQTERARAVAIAMGGFTSGNA  239 (461)
Q Consensus       180 ~~----~--~~~~~----~~~~l~~~---r~l~G~~~g~-~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~  239 (461)
                      +.    .  +...+    +-+....+   -.+.|.-.-. ......++=.||.      +++.+.+.++...-.=.+..+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence            21    1  11101    11222222   1222211111 1111222223553      345566777777777778899


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh----cCCCCCCCCCcchhHHHHHHHhhcCccccCCC-------C
Q 012519          240 IGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA----TSSTPDRHPQISKYELEYILREKQKPLLMGNK-------H  308 (461)
Q Consensus       240 ~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  308 (461)
                      ++|++.|.+.+..+.+...++.++..++..++=+++    .+..|+-+.+.++++.+...+...........       +
T Consensus       164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (432)
T PF06963_consen  164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWN  243 (432)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHH
Confidence            999999999998898888888777777655532222    22222211111100000000000000000000       0


Q ss_pred             CCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHh
Q 012519          309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (461)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (461)
                      .-+....+++..+++|.+... +...+.++...++...+..|+... |+++...|.+-+...+.++.+.++..++.+|+|
T Consensus       244 ~~~~~~~~w~~Y~~q~vflas-~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG  321 (432)
T PF06963_consen  244 PLRTIIRGWRTYFRQPVFLAS-FALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG  321 (432)
T ss_pred             HHHHHhccHHHHHhCHHHHHH-HHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            001122345556666655444 444444445666778888999986 999999999999999999999999999999999


Q ss_pred             hc
Q 012519          389 QR  390 (461)
Q Consensus       389 ~~  390 (461)
                      ..
T Consensus       322 lv  323 (432)
T PF06963_consen  322 LV  323 (432)
T ss_pred             ch
Confidence            76

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.99  E-value=4.6e-07  Score=84.29  Aligned_cols=136  Identities=15%  Similarity=0.179  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHh
Q 012519          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR  216 (461)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  216 (461)
                      +.+.-+-.+...+..+.+.+..+|+..+.=+.++.++..++.++.+++  ++.+.-+++-++.+++.|........+ +.
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~tfL~l-t~  138 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEVTFLSL-TH  138 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHHHHHHH-HH
Confidence            446666677788888888999999886665666777888899999999  999999999999999999888877776 44


Q ss_pred             hcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--hhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          217 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI--FGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       217 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      .+++    ..++-++.+.+.++++|+..-..+.+ .|+  |..+++...+.++..+..++.+|.++
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~  199 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPP  199 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            6653    46788999999999999987766666 564  77888877777666666666665443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.99  E-value=5.3e-08  Score=87.29  Aligned_cols=178  Identities=16%  Similarity=0.120  Sum_probs=137.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh-cchHHHHHH
Q 012519           92 FITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWG  170 (461)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~  170 (461)
                      |+++..|.+...+.+-.+    ..+..-.-+|.+..|-|+|..+.|++.+...+.....++....+++|. ++|+..+..
T Consensus       205 w~~~~aW~vtLfmGlqS~----~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~  280 (395)
T COG2807         205 WRSPLAWQVTLFMGLQSL----LYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA  280 (395)
T ss_pred             ccCchhHHHHHHHHhhHH----HHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            444445555444444333    334555668999999999999999999999999999999999999964 578888888


Q ss_pred             HHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (461)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~  249 (461)
                      .+++.++.+.+.+.+.++++.-   -++.|+|.|..++.+..++.+-.+ +++-+.-.++.+....+=..+||.+.|++.
T Consensus       281 ~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lh  357 (395)
T COG2807         281 LLLMLVGLVGLLLAPGQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLH  357 (395)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence            8888888888877732232222   489999999999999999998875 444566666777777777788999999999


Q ss_pred             hhcC-chhHHHHHHHHHHHHHHHHHHhc
Q 012519          250 SQAG-IFGPFVIFGLSGFLWVLVWLSAT  276 (461)
Q Consensus       250 ~~~g-wr~~f~~~~~~~~~~~~~~~~~~  276 (461)
                      |..| |+..+...+...+++.+.-+..-
T Consensus       358 Da~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         358 DATGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             HhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            9775 99999998888888777766653

>TIGR00788 fbt folate/biopterin transporter

Probab=98.96  E-value=1.8e-08  Score=98.38  Aligned_cols=153  Identities=14%  Similarity=0.139  Sum_probs=122.6

Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccc--------cccHHHHHHHHH
Q 012519          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--------DTSLLALLAMRA  197 (461)
Q Consensus       126 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--------~~~~~~l~~~r~  197 (461)
                      .+.+|.++.+.|++.....++..++....+++.+|++.|+++.++.++.+++.+......        .++.+.++..-+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            357899999999999999999999999999999999999999999999998876543210        033445666778


Q ss_pred             HHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----chhHHHHHHHHHH--HHHH
Q 012519          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-----IFGPFVIFGLSGF--LWVL  270 (461)
Q Consensus       198 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-----wr~~f~~~~~~~~--~~~~  270 (461)
                      +.+++.+........++.+..|++++|...++..+..++|..+++.+++.+.++.|     ++..+....+..+  +..+
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l  439 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL  439 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence            99999998999999999999999999999999999999999999999999998877     5544444333222  2233


Q ss_pred             HHHHhcCC
Q 012519          271 VWLSATSS  278 (461)
Q Consensus       271 ~~~~~~~~  278 (461)
                      ..++++|+
T Consensus       440 ~~~~llP~  447 (468)
T TIGR00788       440 PLLHLLPR  447 (468)
T ss_pred             HHHHhCCC
Confidence            33346675

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.96  E-value=7e-08  Score=92.71  Aligned_cols=140  Identities=13%  Similarity=0.174  Sum_probs=104.9

Q ss_pred             hhhhhhhhhc--CCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Q 012519          120 VAIVPLSLAH--GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (461)
Q Consensus       120 ~~~~~i~~~~--~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  197 (461)
                      ..++.+.++.  +.+....+...+.+..+..++.++.+++.||+++|+++.++.++..+..++..+.  ++... +.+-+
T Consensus       253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~--~~~~~-~~~l~  329 (410)
T TIGR00885       253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA--GGHVG-LYCLT  329 (410)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CChHH-HHHHH
Confidence            3444444443  4444555666777778889999999999999999999999999999888888887  66544 56667


Q ss_pred             HHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CchhHHHHHHHH
Q 012519          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA------GIFGPFVIFGLS  264 (461)
Q Consensus       198 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------gwr~~f~~~~~~  264 (461)
                      +.|++.+..+|..+++..+..+++.+....++..+  .+|..++|++.|.+.|..      +.+..|++..++
T Consensus       330 ~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       330 LCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            88888888999999999999975543333333333  399999999999999954      477777764443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11462 putative transporter; Provisional

Probab=98.95  E-value=9e-08  Score=93.40  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=88.0

Q ss_pred             CchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHH
Q 012519          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMN  211 (461)
Q Consensus       132 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~  211 (461)
                      ++...+++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+..+.+.+++.-++.|++.+...+...
T Consensus       261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455677788889999999999999999999998776555544433433333213333445555677888777777777


Q ss_pred             HHHHhhcC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          212 NMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       212 ~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      ++++|..+       +++.|..++.......+|..+|+.+++.+.+..|+
T Consensus       341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            78887765       23335666777788999999999999998876665

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.95  E-value=9.2e-08  Score=91.76  Aligned_cols=126  Identities=17%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHH-HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh
Q 012519          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW-GVALWSLATFLTPWAADTSLLALLAMRAVVGLAE  203 (461)
Q Consensus       125 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~  203 (461)
                      +.+.+|.+..+.+++.....++..++.++.+++.||++++..... +..+..+...........+.+.+++..++.|++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            344489999999999999999999999999999999984433322 2222222222222221146677888889999999


Q ss_pred             hchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012519          204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (461)
Q Consensus       204 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  251 (461)
                      +...+...++..|.+| +++|.+.++.+....+|..+++.+++.+...
T Consensus       314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            9999999999999986 6889999999999999999999998887654

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=1.1e-07  Score=89.96  Aligned_cols=294  Identities=16%  Similarity=0.062  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcC
Q 012519          140 QSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP  219 (461)
Q Consensus       140 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  219 (461)
                      .++....+.+..++.+.+.|+.|.|+.++++........+..-+   +|-+.++++-.+.|+|.+..|...-.+++|..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            67778888899999999999999999999999999888777655   578888999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------Cch-h-------HHHH---HHHHHHHHHHHHHHhcCCCC
Q 012519          220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--------GIF-G-------PFVI---FGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       220 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--------gwr-~-------~f~~---~~~~~~~~~~~~~~~~~~~~  280 (461)
                      ++.+.+..++.-+....+.++|..+...+...-        +-+ .       .+.+   .+++..+..+...-.... |
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~-p  211 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL-P  211 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec-C
Confidence            999999999999999998888876554442211        111 0       1111   111111111111111111 1


Q ss_pred             CCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCc-
Q 012519          281 DRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDL-  359 (461)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-  359 (461)
                      .+...   .+.+.            .+...........+++++|+...+....+..++.........|..+.-....+. 
T Consensus       212 ~~~~~---~~~~~------------~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n  276 (461)
T KOG3098|consen  212 SKDVV---NCKSS------------SETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSN  276 (461)
T ss_pred             ccchh---hhhhh------------ccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCc
Confidence            11000   00000            000000111233356677887777776666655555555555555443312221 


Q ss_pred             --cccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHH--HHHHhccC---------------
Q 012519          360 --RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA--LIGLTAAK---------------  420 (461)
Q Consensus       360 --~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------------  420 (461)
                        ...+......+++.+++....+.+.+|.++.+..      ..+.++.++....  +..+....               
T Consensus       277 ~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~------~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~  350 (461)
T KOG3098|consen  277 TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK------PTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFT  350 (461)
T ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC------cchhHHHHHHHHHHHHHhccccccCCCCCCcccccccc
Confidence              2234445555666777777777777777665432      2222332222222  22221111               


Q ss_pred             -hhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccc
Q 012519          421 -SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVL  458 (461)
Q Consensus       421 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~  458 (461)
                       ......+..++.+..-.......+.....+.|+++..+
T Consensus       351 ~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~  389 (461)
T KOG3098|consen  351 PSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQA  389 (461)
T ss_pred             cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHH
Confidence             12233344444555566666777778888888765543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.93  E-value=4.2e-09  Score=98.72  Aligned_cols=149  Identities=16%  Similarity=0.195  Sum_probs=134.0

Q ss_pred             hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh
Q 012519          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEG  204 (461)
Q Consensus       125 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g  204 (461)
                      -.||++..+...|.....-..+-.+.-++.+++.+|+|+-+++.+++.+..+=.+...+.  +|.|+.+-..+++|+..+
T Consensus       397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgit~a  474 (618)
T KOG3762|consen  397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGITHA  474 (618)
T ss_pred             HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHHHHH
Confidence            356777777778888788888888899999999999999999999999999999999999  999999999999999999


Q ss_pred             chhhHHHHHHHhhcCchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          205 VALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       205 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      ..|.++.+|+++..||+-|..+.++.+ ...++|-.+|.++||.+.+.+|-|..|.+.++.+++.+++....
T Consensus       475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999985 56789999999999999999999999999998888766655443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.8e-07  Score=88.51  Aligned_cols=158  Identities=16%  Similarity=0.118  Sum_probs=121.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhh-hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      +.++++...+   ..++........+....++.+ -+|.++.+..+.......+..++.+++.++.+|+|+|+++.++.+
T Consensus       234 ~Nrp~~~~l~---~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~  310 (467)
T COG2211         234 KNRPLLLLLL---MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL  310 (467)
T ss_pred             ccchHHHHHH---HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence            3344444443   333333444455555444443 356667777788888888888889999999999999999999999


Q ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCc-------hhhhHHHHHHHHHHHHHHHHHHHHH
Q 012519          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLS  245 (461)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~  245 (461)
                      +..++.++..+.+.++.+.+++..++.++|.+...+...++++|..+-       ++-|...+......-+|..++..+.
T Consensus       311 ~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         311 LLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             HHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888556899999999999999999999999999887642       2347788888888889999999888


Q ss_pred             HHHHhhcCc
Q 012519          246 PILMSQAGI  254 (461)
Q Consensus       246 ~~l~~~~gw  254 (461)
                      +++....|+
T Consensus       391 g~~L~~~Gy  399 (467)
T COG2211         391 GWILGAIGY  399 (467)
T ss_pred             HHHHHHcCC
Confidence            888776653

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=8.3e-09  Score=93.26  Aligned_cols=163  Identities=18%  Similarity=0.159  Sum_probs=128.6

Q ss_pred             HHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhc--chHHHHHHHHHHHHHHHHhhccccc
Q 012519          111 CNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG--GKIIMAWGVALWSLATFLTPWAADT  187 (461)
Q Consensus       111 ~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~  187 (461)
                      ........-|.++. +.+.+..+..+.|+..--..+.+.++..+.|.++||++  |-.....+++..+..+....++  +
T Consensus       282 ~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~--~  359 (464)
T KOG3764|consen  282 SNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA--T  359 (464)
T ss_pred             ccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh--h
Confidence            33333444555555 56677766679999999999999999999999999999  4344555666666666667778  9


Q ss_pred             cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT------ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (461)
Q Consensus       188 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  261 (461)
                      ++.++++-++..|++.+..............+.+      -.|...++...++.+|..+||.++|.+.+..|++|...+.
T Consensus       360 ~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii  439 (464)
T KOG3764|consen  360 SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII  439 (464)
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence            9999999999999998887777666666666543      3478899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 012519          262 GLSGFLWVLVWLSA  275 (461)
Q Consensus       262 ~~~~~~~~~~~~~~  275 (461)
                      ++..++-..+...+
T Consensus       440 g~~n~iyapvl~ll  453 (464)
T KOG3764|consen  440 GILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHHHH
Confidence            98888766554443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.86  E-value=1.1e-07  Score=93.81  Aligned_cols=139  Identities=16%  Similarity=0.047  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHhHhhh----hhhhhhhcchHHHHHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHhhhhh
Q 012519          136 SGIVQSSFLWGYLVSPIAG----GTLVDYYGGKIIMAWGVALWSLATFLTPWAAD-------TSLLALLAMRAVVGLAEG  204 (461)
Q Consensus       136 ~~~~~s~~~~~~~~~~~~~----g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g  204 (461)
                      .+++.++..+...+..++.    +++.+|++..+.+.+|+++.+++.+..++...       -|.++++...++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5667777776666666665    77777777778999999999999888666510       125688889999999999


Q ss_pred             chhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hcCchhHHHHHHHHHHHHHHHHHH
Q 012519          205 VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS----------QAGIFGPFVIFGLSGFLWVLVWLS  274 (461)
Q Consensus       205 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~gwr~~f~~~~~~~~~~~~~~~~  274 (461)
                      ...|...+++.+..|++.||+++|++.....+|..++..+......          ..+..+.|...++.+++..++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888877777777666543211          113567787777766654444443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.84  E-value=2.1e-07  Score=84.81  Aligned_cols=164  Identities=20%  Similarity=0.227  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhhh-cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      +....++.|+...........++.+.++ .|.+..+.+...+.+..+.++|.++.-++..|+...|.+....++..+-++
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~  317 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL  317 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3444555666666666777777766666 788999999999999999999999999999999999999999988888888


Q ss_pred             HhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 012519          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (461)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~  259 (461)
                      ..++.  ++.+.++. -++.|+..+..+|...++..+..|  +.....+..-....+|+.+-|.+.|++.|..|-...+.
T Consensus       318 ~~~l~--~g~v~~~~-l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         318 AVALI--GGVVALYA-LFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHHh--cChHHHHH-HHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            88888  78655554 477889999999999999999998  44555666666778899999999999999999888887


Q ss_pred             HHHHHHHHHH
Q 012519          260 IFGLSGFLWV  269 (461)
Q Consensus       260 ~~~~~~~~~~  269 (461)
                      ....++.+.+
T Consensus       393 ~~pllc~lyV  402 (422)
T COG0738         393 IVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHH
Confidence            6666665555

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.82  E-value=8.2e-08  Score=85.11  Aligned_cols=318  Identities=14%  Similarity=0.063  Sum_probs=199.0

Q ss_pred             hcCCCchhHH-HHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhch
Q 012519          128 AHGWSRSFSG-IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVA  206 (461)
Q Consensus       128 ~~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~  206 (461)
                      +.+++..|.. -+.-...-.+.+.-.+.=.+.|..-.|++++.-.+...+...+.-+.  ++.+.+-+.-++.|...+ .
T Consensus        35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g--~sV~~mQvlE~FyG~~tA-a  111 (433)
T KOG3810|consen   35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG--PSVKAMQVLEFFYGPATA-A  111 (433)
T ss_pred             CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc--CCchheeeehhhcChHHH-H
Confidence            3455555432 22223344445555666678999999999988888888888888888  999999999999999876 5


Q ss_pred             hhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh--HHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 012519          207 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG--PFVIFGLSGFLWVLVWLSATSSTPDRHP  284 (461)
Q Consensus       207 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (461)
                      ..+.++++-+.++++++.++.+...+..-.|..+|..++..+++.-.+..  .=.+.-....+.. +...++|..++..-
T Consensus       112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~-~~A~fLP~v~rSl~  190 (433)
T KOG3810|consen  112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAV-LLALFLPRVKRSLY  190 (433)
T ss_pred             HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHH-HHHhhCCCCchhhh
Confidence            67889999999999999999999999999999999999999877543332  2222222222223 33334444442221


Q ss_pred             CcchhHHHHHHHhhcCccccCCCCCCC---------CCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 012519          285 QISKYELEYILREKQKPLLMGNKHKPA---------TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY  355 (461)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (461)
                      ....++ +....+.++.    ..+.+.         ..+.++.+..+||++..-.+-+.+...+++.+..|....-.+..
T Consensus       191 f~~~~~-~~~v~~~e~~----~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~  265 (433)
T KOG3810|consen  191 FHRLED-KISVGDLEEM----NPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA  265 (433)
T ss_pred             hhcccc-cceeccchhc----CccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC
Confidence            111111 0000110000    000000         11234556778898888888888888888888887776666642


Q ss_pred             -CCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHH
Q 012519          356 -HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG  434 (461)
Q Consensus       356 -g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (461)
                       +-.....|..=++..+.++++.+..|.+.-.+.|+       +..++.++.+..+-.++.+....+.++..+..++...
T Consensus       266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~  338 (433)
T KOG3810|consen  266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRV  338 (433)
T ss_pred             CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHh
Confidence             11112245555666677788888888886665555       3566666666666667777777777776666666655


Q ss_pred             HHhhhhhch-hHhhhhhcccccccccCC
Q 012519          435 MKSFSHSGF-LVNLQEIAPQYSGVLHGI  461 (461)
Q Consensus       435 ~~~~~~~~~-~~~~~~~~p~~~g~~~gl  461 (461)
                      .+.+..... .....++..+.-|.+.|+
T Consensus       339 ~y~l~itiA~~~iA~nL~~e~~gLvFGi  366 (433)
T KOG3810|consen  339 IYQLTITIATFQIARNLSSELFGLVFGI  366 (433)
T ss_pred             hHhhhhhHHHHHHHHhhhhhhheeeeeh
Confidence            555554433 333344555556666553

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.81  E-value=8.7e-07  Score=81.60  Aligned_cols=158  Identities=16%  Similarity=0.071  Sum_probs=127.4

Q ss_pred             hhHhhhhhh-hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhh-hhcchHHHHHHHHHHHHHHHHhhcc-ccccHHHHH
Q 012519          117 VMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-YYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALL  193 (461)
Q Consensus       117 ~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~  193 (461)
                      +-.+++.++ .+-||.+..+..-+......|..++....|++.. |.++|+...+++....++..+..++ ...+.+.+.
T Consensus       226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~  305 (403)
T PF03209_consen  226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFR  305 (403)
T ss_pred             hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            334455444 4568999999999999999999999999999988 6788888888888888876664443 226889999


Q ss_pred             HHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CchhHHHHHHH
Q 012519          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA----------GIFGPFVIFGL  263 (461)
Q Consensus       194 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----------gwr~~f~~~~~  263 (461)
                      ..-++.|++.|.......+...+...+++-|..+|.+...+.++..+|..+++.+.|..          ++-..|.+-++
T Consensus       306 ~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~  385 (403)
T PF03209_consen  306 PGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAV  385 (403)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887631          35556666666


Q ss_pred             HHHHHHHHHHH
Q 012519          264 SGFLWVLVWLS  274 (461)
Q Consensus       264 ~~~~~~~~~~~  274 (461)
                      ..++.+.+...
T Consensus       386 ll~~a~~ll~~  396 (403)
T PF03209_consen  386 LLLAALVLLGR  396 (403)
T ss_pred             HHHHHHHHHHH
Confidence            65555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.80  E-value=6.2e-08  Score=91.89  Aligned_cols=113  Identities=15%  Similarity=0.083  Sum_probs=87.7

Q ss_pred             hhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHhh
Q 012519          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT--SLLALLAMRAVVGL  201 (461)
Q Consensus       124 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~l~~~r~l~G~  201 (461)
                      .+.+.+|.+..+.+++.+...+...++.++.|++.||+|+|+.+..+.....++..+..+...+  +.+.+++.-.+.++
T Consensus       251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (366)
T TIGR00886       251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF  330 (366)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            4455689999999999999999999999999999999999988887777766666555443112  56665555566666


Q ss_pred             hhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHH
Q 012519          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG  237 (461)
Q Consensus       202 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  237 (461)
                      +.|.......+++.+..| +++|.+.|+.+...++|
T Consensus       331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            666666677788888886 79999999998887776

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.77  E-value=9.6e-08  Score=91.97  Aligned_cols=177  Identities=12%  Similarity=0.050  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcc---------hHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG---------KIIMA  168 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---------r~~~~  168 (461)
                      ..++.++++.+........+....|.+. +-+|.+..+.|++.++..+...+..+++|.++||.-+         |..=.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            4556667777777776667777777654 5689999999999999999999999999999998744         33444


Q ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHH-HhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          169 WGVALWSLATFLTPWAADTSLLALLAMRAV-VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (461)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l-~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~  247 (461)
                      ++....+++.+..++....+.+.-+++..+ .++ .|...+..+.-..|.. +++-+..+|+.+....+..+++|.+.+.
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~-~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~  415 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL-SGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGI  415 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH-cccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheee
Confidence            555566666666676632233222222222 222 2333333333344444 5889999999999999999999999999


Q ss_pred             HHh---hcCchhHHHHHHHHHHHHHHHHHHhcC
Q 012519          248 LMS---QAGIFGPFVIFGLSGFLWVLVWLSATS  277 (461)
Q Consensus       248 l~~---~~gwr~~f~~~~~~~~~~~~~~~~~~~  277 (461)
                      +..   ...||+.|++.+++.++..++..++-.
T Consensus       416 ~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  416 IVTDNTREEWRIVFLIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             EeCCCCHHHHHHHHHHHHHHHHHhchheeEeec
Confidence            984   236999999999998887766655543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.74  E-value=9.4e-07  Score=85.17  Aligned_cols=153  Identities=12%  Similarity=0.008  Sum_probs=101.1

Q ss_pred             hhhHhhhhhhhh-hcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh----ccccccHH
Q 012519          116 VVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP----WAADTSLL  190 (461)
Q Consensus       116 ~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~----~~~~~~~~  190 (461)
                      ..+....|.+.+ .+|.+..+.++.......+..++..+.+++.++.++++.+.....+..++.++..    .. .++++
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~-~~~~~  313 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW-PHVWL  313 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc-cccHH
Confidence            344445665544 5689999999998888888888888888877555444443322222222322221    12 14555


Q ss_pred             HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 012519          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (461)
Q Consensus       191 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  270 (461)
                      .++++.++.|+|.+...+......-.- ....+|++.++.+.....+..+++.+++++..+ +=++.|...+++..+...
T Consensus       314 ~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~  391 (413)
T PRK15403        314 WSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVV  391 (413)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHH
Confidence            567788888999888877777533211 223479999999999999999999999988766 557777666655554433


Q ss_pred             H
Q 012519          271 V  271 (461)
Q Consensus       271 ~  271 (461)
                      .
T Consensus       392 ~  392 (413)
T PRK15403        392 F  392 (413)
T ss_pred             H
Confidence            3

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.72  E-value=4.3e-06  Score=75.37  Aligned_cols=264  Identities=13%  Similarity=0.033  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhh-----hhcchHHHHH-H
Q 012519           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-----YYGGKIIMAW-G  170 (461)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~  170 (461)
                      ...-+..+.+.+.+.+.-..... .+|.+.+.-|.|.++.+...-++. .+ ..-+++.++.|     |+||||..++ +
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P~-sLKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-PF-SLKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-HH-HHHHHHHhhhHHHHHHhhccccceeeeh
Confidence            34455666677777777777777 889998888888887766543332 22 34678889999     9999985433 3


Q ss_pred             HHHHHHHHHHhhcc---------ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHH
Q 012519          171 VALWSLATFLTPWA---------ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (461)
Q Consensus       171 ~~~~~i~~~~~~~~---------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  241 (461)
                      ..+.+..+.+.+.-         ..++...+-..-++.-+..+.-..+.-.+.-....+++-|.+......+.+.|.+++
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG  185 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence            33333333332222         113444444455667777787788888888888888888877777766666666666


Q ss_pred             HHHHHHHHh-------hcCch---------hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccC
Q 012519          242 LVLSPILMS-------QAGIF---------GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMG  305 (461)
Q Consensus       242 ~~~~~~l~~-------~~gwr---------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (461)
                      ..+.-.+-+       ..+|.         ..+++.+.+.++.-.+..+..+|.++...   ++                
T Consensus       186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~---~e----------------  246 (510)
T KOG3574|consen  186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD---EE----------------  246 (510)
T ss_pred             cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh---hh----------------
Confidence            544322211       11232         23444555555555555555444433211   00                


Q ss_pred             CCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhh
Q 012519          306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (461)
                      .+...+...+-++++++-|.+...++.....-.++.+-....+.-+.|. |++..+.++...+.    +.-.+..++...
T Consensus       247 ~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~v~~----~plqI~l~~~~g  321 (510)
T KOG3574|consen  247 LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEELALIAVPL----VPLQIALPLYIG  321 (510)
T ss_pred             hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhHheeeeeeh----hhHHHhhhhhhe
Confidence            0011111223456788889988888888888888888888888888884 99988877765443    344444444444


Q ss_pred             hH
Q 012519          386 ML  387 (461)
Q Consensus       386 r~  387 (461)
                      |+
T Consensus       322 k~  323 (510)
T KOG3574|consen  322 KW  323 (510)
T ss_pred             ee
Confidence            44

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.69  E-value=1.3e-06  Score=85.65  Aligned_cols=140  Identities=16%  Similarity=0.013  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhcchHH-------HHHHHHHHHHHHHHh-----hcc---ccccHHHHHHHHHHHh
Q 012519          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKII-------MAWGVALWSLATFLT-----PWA---ADTSLLALLAMRAVVG  200 (461)
Q Consensus       136 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-------~~~~~~~~~i~~~~~-----~~~---~~~~~~~l~~~r~l~G  200 (461)
                      .+++.+...+...+..++.+++.||+|+|+.       +.+|+++.+++.+..     .++   ...++|+++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4667777778888899999999999999873       777777777665432     121   1146788888999999


Q ss_pred             hhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hcCchhHHHHHHHHHHHHHH
Q 012519          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS----------QAGIFGPFVIFGLSGFLWVL  270 (461)
Q Consensus       201 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~gwr~~f~~~~~~~~~~~~  270 (461)
                      +|.++..+....++.+..|++.++.++|++....++|..+|..++.....          .-...+.|...++.+++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888865521          11245667767766665555


Q ss_pred             HHHHh
Q 012519          271 VWLSA  275 (461)
Q Consensus       271 ~~~~~  275 (461)
                      +.+..
T Consensus       471 ~~~~~  475 (489)
T PRK10207        471 VMALM  475 (489)
T ss_pred             HHHHH
Confidence            44443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.67  E-value=1.2e-07  Score=66.76  Aligned_cols=80  Identities=20%  Similarity=0.196  Sum_probs=73.9

Q ss_pred             HHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHH
Q 012519          111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL  190 (461)
Q Consensus       111 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  190 (461)
                      .+..++.+.+.+|.+++|.++|.++.|++.+...+|+.+|++...++.++..+++.+..+++...+..+.+++.  ++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~--~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT--HSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hchH
Confidence            35678899999999999999999999999999999999999999999999889999999999999999999998  7766


Q ss_pred             HH
Q 012519          191 AL  192 (461)
Q Consensus       191 ~l  192 (461)
                      ..
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            54

Note that many members are hypothetical proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.67  E-value=2.5e-06  Score=68.79  Aligned_cols=108  Identities=14%  Similarity=0.171  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhc
Q 012519          139 VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF  218 (461)
Q Consensus       139 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  218 (461)
                      -.++......+..++.+.+.+++|.|+.++++.+...+-.... +-  ++.+.++.+-++.|++.+..|++.-.++.+..
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FY--PNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hh--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            3455566677788888999999999999999999998665554 34  78899999999999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          219 PQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (461)
Q Consensus       219 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~  249 (461)
                      ++++|++..++.-.....+.++|.++.-.+.
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888887665553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.63  E-value=1.2e-07  Score=87.50  Aligned_cols=176  Identities=15%  Similarity=0.035  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHH--------HHH-HHHHHHHHhHhhhhhhhhhhcchHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGI--------VQS-SFLWGYLVSPIAGGTLVDYYGGKIIMAW  169 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~--------~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~  169 (461)
                      +.+...+..+|+.-...+..+.....+.+.+++.+.+...        ... +..+++..+-.+...++|+.|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5666677777776666667777777888877765554333        111 2223333466667889999999999999


Q ss_pred             HHHHHHHHHHHhhcccccc----HH----HHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHH
Q 012519          170 GVALWSLATFLTPWAADTS----LL----ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (461)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~----~~----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  241 (461)
                      +.+++.+..+..+..  .|    -.    ...+..++.-+|   .......+-+|.+|.+-|+.+-|+..+..-+|+++|
T Consensus       384 GF~~~~i~~~~~~~~--y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg  458 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGP--YNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVG  458 (538)
T ss_pred             hHHHHHHHHHHHcCC--cccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHH
Confidence            999999999988887  44    11    222333444443   233445567899999999999999999999999999


Q ss_pred             HHHHHHHHh-----hcCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          242 LVLSPILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       242 ~~~~~~l~~-----~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      ......+.+     ..+.|+.|++.+.++++..+..+++ ||+.
T Consensus       459 ~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk  501 (538)
T KOG0252|consen  459 AFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETK  501 (538)
T ss_pred             HHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe-eccc
Confidence            999999988     7789999999999998877766665 4443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.63  E-value=0.0002  Score=69.36  Aligned_cols=281  Identities=11%  Similarity=-0.005  Sum_probs=164.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHH-HHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      ..+..+..+.+..++..+.....-..-..+.-+-. .++.+..+-....+ ...+...+..++++++++.+++-+....+
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~-gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F   99 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ-GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPF   99 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            33455566666666666655444443333222212 67777777665555 44556778899999999999888877777


Q ss_pred             HHHHHHhhccc-------ccc----------------------HHHHHHHHHHHhhhhhchhh-HHHHHHHhhcCchhhh
Q 012519          175 SLATFLTPWAA-------DTS----------------------LLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTERA  224 (461)
Q Consensus       175 ~i~~~~~~~~~-------~~~----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~  224 (461)
                      .....++++.-       +++                      .|.+.+..++.-+-.....+ .-..+..|.++.++-.
T Consensus       100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAK  179 (491)
T PF03219_consen  100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAK  179 (491)
T ss_pred             HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            76666655530       111                      11122222222222222222 4577889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh---------hcCchhHHHHHH----HHHHHHHHHHHHhcCCCCCCCCCcchhHH
Q 012519          225 RAVAIAMGGFTSGNAIGLVLSPILMS---------QAGIFGPFVIFG----LSGFLWVLVWLSATSSTPDRHPQISKYEL  291 (461)
Q Consensus       225 ~~~~~~~~~~~~G~~~g~~~~~~l~~---------~~gwr~~f~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (461)
                      +..++...+.++|.+++..+..++.+         ...|...+....    +.+++.........++..++.... +...
T Consensus       180 RfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-~~~~  258 (491)
T PF03219_consen  180 RFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-PSAK  258 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-hhhh
Confidence            99999999999999999999988887         123554332221    122222222222211111111100 0000


Q ss_pred             HHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc----cchhhh
Q 012519          292 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFSA  367 (461)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~  367 (461)
                                 ..++.+.+......++.++++|.+..+++...+++.....+....-..+++.+. ++.+    .|....
T Consensus       259 -----------~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~  326 (491)
T PF03219_consen  259 -----------KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSS  326 (491)
T ss_pred             -----------cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence                       011222233345677888999999999998888888888777766666666543 3322    233444


Q ss_pred             hhHHHHHHHHHHHHHhhhhHhhc
Q 012519          368 VPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       368 ~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      ..++..++..++++.+.+|+|.+
T Consensus       327 ~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  327 WTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHH
Confidence            55556666667788888888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.62  E-value=3.7e-07  Score=85.97  Aligned_cols=137  Identities=8%  Similarity=0.024  Sum_probs=103.4

Q ss_pred             ChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcc
Q 012519          314 IPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (461)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (461)
                      +.+..+++.++....+.+...+..++...+.+++=-++++. +-.+..-|........+.++.-++.+++.+|+|+-+  
T Consensus       361 ~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~--  437 (618)
T KOG3762|consen  361 LADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN--  437 (618)
T ss_pred             HHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc--
Confidence            33444678888877777777788888888888887888885 656666676666667777888889999999999873  


Q ss_pred             hhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          394 VTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                             ++..++.+...=++.+....++|..+..-++-+...+..+....+++..+.|. .+.++.|
T Consensus       438 -------v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~  498 (618)
T KOG3762|consen  438 -------VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQG  498 (618)
T ss_pred             -------eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence                   44566666666667777778888888888888888888888888899988874 4655544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.62  E-value=7.3e-06  Score=79.22  Aligned_cols=142  Identities=12%  Similarity=0.001  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHHhhcccccc---------------------HHHHHHH
Q 012519          138 IVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATFLTPWAADTS---------------------LLALLAM  195 (461)
Q Consensus       138 ~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~---------------------~~~l~~~  195 (461)
                      |....+.+...+.+++..++.+|+|+ |++..++.++.+++.+...+.  ++                     .+..++.
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  386 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLV--TYVAKNSRYYDGDGESLPPPTGIKASALIV  386 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH--HhhhhccccccccccccCcchhhHHHHHHH
Confidence            44455666666777888999999994 777799988888887776654  22                     3777888


Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--chhHHHHHHHHHHHHHHH
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--IFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~  271 (461)
                      -.+.|+..+..+..-++++++..++  ++.|..+|+.+.+..+.+++..+..|.+.+.+|  -.+.+.+.++..++..++
T Consensus       387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~  466 (477)
T TIGR01301       387 FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLL  466 (477)
T ss_pred             HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHH
Confidence            8999999999999999999999985  456999999999999999999988888666555  667888889999999999


Q ss_pred             HHHhcCCCCC
Q 012519          272 WLSATSSTPD  281 (461)
Q Consensus       272 ~~~~~~~~~~  281 (461)
                      .++.+|+++.
T Consensus       467 ~~~~~~~~~~  476 (477)
T TIGR01301       467 ALILLPRPRV  476 (477)
T ss_pred             HHHhCCCCCC
Confidence            8888887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.59  E-value=3.9e-10  Score=110.28  Aligned_cols=163  Identities=16%  Similarity=0.181  Sum_probs=112.2

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh--c-c-ccc----c
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--W-A-ADT----S  188 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~-~-~~~----~  188 (461)
                      ......+.+.+..+.+..  -+......+...++.++...+.||+|||+.++.+..+.+++.+..+  . . ...    +
T Consensus       271 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (451)
T PF00083_consen  271 FIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS  348 (451)
T ss_pred             cccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344455777777777666  2222334455556777778999999999999999999888877664  1 1 111    2


Q ss_pred             HHHHHHHHHH-HhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 012519          189 LLALLAMRAV-VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (461)
Q Consensus       189 ~~~l~~~r~l-~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  267 (461)
                      +..+...... .+++. +..+....+..|.+|.+.|+++.++......++..+++.+...+.+..+-...|++.+.++++
T Consensus       349 ~~~i~~~~l~~~~~~~-g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  349 ILSIVFLALFFAFFSL-GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             cccceeeeeccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            2222222221 12222 344666688899999999999999999999999999998888887766634566677777777


Q ss_pred             HHHHHHHhcCCCCCC
Q 012519          268 WVLVWLSATSSTPDR  282 (461)
Q Consensus       268 ~~~~~~~~~~~~~~~  282 (461)
                      ..+..+++.||+..+
T Consensus       428 ~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  428 AIIFVYFFLPETKGK  442 (451)
T ss_pred             HHhheeEEEeeCCCC
Confidence            777777888887543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.51  E-value=1.1e-06  Score=85.16  Aligned_cols=129  Identities=16%  Similarity=0.161  Sum_probs=89.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhH-hhcCcchhhhHHHH
Q 012519          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTSVTLTRKIL  401 (461)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-~~~~~~~~~~~~~~  401 (461)
                      .+.++.++...+...+.++++..++|.|+++.+|++..+++.+.....+...++.+++|+++||+ |||       |  .
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr-------r--~   78 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR-------M--A   78 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH-------H--H
Confidence            34567777788888889999999999999998899999999999999999999999999999999 887       2  3


Q ss_pred             HHHhhHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc---ccccccC
Q 012519          402 QSIGFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ---YSGVLHG  460 (461)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~g~~~g  460 (461)
                      +.++.+..+++.+++.... ........+.+...+.+...+...++..|.+|+   +|+++.|
T Consensus        79 iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~  141 (493)
T PRK15462         79 VMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFS  141 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceeh
Confidence            3344444444433333221 112122222223333455556667788898874   4666554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.48  E-value=7e-06  Score=81.54  Aligned_cols=181  Identities=16%  Similarity=0.091  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      .+..+.+..+.............+.+-+..+.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.+
T Consensus       296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            333444444444444445555566777777766544 5555666777777888889999999999999999999999988


Q ss_pred             Hhhcccc--c---------cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          180 LTPWAAD--T---------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       180 ~~~~~~~--~---------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      +.+....  .         .+..+...-+..........+....+.+|.+|.+-|+++.++......+...+-......+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~  454 (513)
T KOG0254|consen  375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI  454 (513)
T ss_pred             HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7765410  0         1122222223333333334556667889999999999999998877777665554444445


Q ss_pred             HhhcCchhHHHHHHHHHHHHHH-HHHHhcCCCCC
Q 012519          249 MSQAGIFGPFVIFGLSGFLWVL-VWLSATSSTPD  281 (461)
Q Consensus       249 ~~~~gwr~~f~~~~~~~~~~~~-~~~~~~~~~~~  281 (461)
                      .+..++...|...+..+.+..+ +.+++.||+..
T Consensus       455 ~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg  488 (513)
T KOG0254|consen  455 TEALGIGGTFGYFGGICLLSLIIFVFFFVPETKG  488 (513)
T ss_pred             HHhccccchHHHHHHHHHHHHHHHheEEcccCCC
Confidence            4444456777777777776666 67777777653

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.47  E-value=1.4e-05  Score=78.58  Aligned_cols=148  Identities=13%  Similarity=0.098  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhh-hcCCCc---hhHHHHHHHHHHHHHHhHhhhhhhhhhhcchH-HHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSL-AHGWSR---SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI-IMAWGVALWS  175 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~---~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~  175 (461)
                      +.+..+..++.++.........|.... -|+-+.   ...++....+.++..+++.+.|.+..+++|-| .++++.++..
T Consensus       312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t  391 (599)
T PF06609_consen  312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT  391 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            344444555555555555556665443 344333   35788888899999999999999999887655 5567776766


Q ss_pred             HHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       176 i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      ++..+.+....+|....+..-++.|+|.|...........-..|+++.|.+.++..+...+|+.+|..+...+
T Consensus       392 a~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  392 AFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            6555554443356666678889999999988888888888888999999999999999999999998776544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=98.46  E-value=9.2e-06  Score=80.34  Aligned_cols=174  Identities=11%  Similarity=0.009  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhc-CC-CchhHHH-HHHHHHHHHHHhHhhhhhhhhh---------hcchHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIVPLSLAH-GW-SRSFSGI-VQSSFLWGYLVSPIAGGTLVDY---------YGGKII  166 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-s~~~~~~-~~s~~~~~~~~~~~~~g~l~dr---------~Grr~~  166 (461)
                      .-++++++..++.......+..-+.+|.+.+ |. .+.+... +++++.++..+|-+..|.+...         +.|--.
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~  432 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIA  432 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHH
Confidence            3445556666665555556666677788888 65 2232233 7888889999999888887721         212223


Q ss_pred             HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHH-HHHH
Q 012519          167 MAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG-LVLS  245 (461)
Q Consensus       167 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g-~~~~  245 (461)
                      +.+..+ +.++.++.++.  -....+++.-++.|++.|..++.....++|.|- |+-|+-..+......+|..+- ..+.
T Consensus       433 l~~~~~-~~~~~lll~~~--~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~  508 (591)
T PTZ00207        433 LFIPSV-CIITMLTLFLT--LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLY  508 (591)
T ss_pred             HHHHHH-HHHHHHHHHHH--CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHH
Confidence            444444 66667766666  333689999999999999999999999999998 999999999999999998776 5667


Q ss_pred             HHHHhhc----------C---chhHHHHHHHHHHHHHHHHHHhc
Q 012519          246 PILMSQA----------G---IFGPFVIFGLSGFLWVLVWLSAT  276 (461)
Q Consensus       246 ~~l~~~~----------g---wr~~f~~~~~~~~~~~~~~~~~~  276 (461)
                      |.+.|+-          |   .|.+|++.+.++++..+....+.
T Consensus       509 G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        509 GEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            7776531          2   78899999988888777665543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.39  E-value=1.7e-06  Score=83.74  Aligned_cols=164  Identities=13%  Similarity=0.053  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhhhhhhh-cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh----hcchHHHHHHHH
Q 012519           98 VKVVSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKIIMAWGVA  172 (461)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~~~~~  172 (461)
                      -..++..++..++.....+.+...+|.+.++ .|.+..+.+.+...+.++.+++.+++|+++||    ..+|......+.
T Consensus       272 dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~  351 (495)
T KOG2533|consen  272 DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC  351 (495)
T ss_pred             chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3455667777777777777788888888887 56899999999999999999999999999999    677776666666


Q ss_pred             HHHHHH-HHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchh-hhHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 012519          173 LWSLAT-FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE-RARAVAIAMGGFTSGNAIGLV-LSPILM  249 (461)
Q Consensus       173 ~~~i~~-~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~-~~~~l~  249 (461)
                      +..+.. +.....  ++......+-+..+.+.....+.....+.+...++. |-...+....+.+.+..++|. .-+...
T Consensus       352 ~~~~~g~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a  429 (495)
T KOG2533|consen  352 LYAIIGAISLLAA--AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA  429 (495)
T ss_pred             HHHHHHHHHHHhh--ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC
Confidence            665544 444444  445555554455555566667777788888775443 444445555555555544444 334444


Q ss_pred             hhcCchhHHHHHHH
Q 012519          250 SQAGIFGPFVIFGL  263 (461)
Q Consensus       250 ~~~gwr~~f~~~~~  263 (461)
                      ..++|-+.|+....
T Consensus       430 p~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  430 PRYGWGAVFYMLVA  443 (495)
T ss_pred             cchhhhhHHHHHHH
Confidence            55788888854333

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.39  E-value=2.6e-06  Score=59.70  Aligned_cols=71  Identities=18%  Similarity=0.108  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Q 012519          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  174 (461)
                      +-..+++.+.......|.++...++.|+|+.++|.+.++..+...++++++|.++||+|+++.++....++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34456666666677788888888899999999999999999999999999999999999998877765543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.28  E-value=1.6e-05  Score=75.52  Aligned_cols=111  Identities=21%  Similarity=0.240  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcccc-cc------HHHHHHHHHHHhhhhhchhhHHHHHHHhhcCch---hhhHHHHHHHHHH
Q 012519          165 IIMAWGVALWSLATFLTPWAAD-TS------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQT---ERARAVAIAMGGF  234 (461)
Q Consensus       165 ~~~~~~~~~~~i~~~~~~~~~~-~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  234 (461)
                      |+++++.++..+|.++..++.. +.      .+.++++-++.++|.|+.-+...++.+|.++++   +|...+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            6788899999999888444311 22      367899999999999999999999999999765   5788999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       235 ~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      ++|..++..+.+++-++.||.+.|.+.++..++..+..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998888776665544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.23  E-value=2.2e-05  Score=71.16  Aligned_cols=123  Identities=20%  Similarity=0.203  Sum_probs=111.9

Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhc--chHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh
Q 012519          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG--GKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE  203 (461)
Q Consensus       126 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~  203 (461)
                      .+.||.++.|.|-+.+...+...+.+....+..||..  -+-.+..++.+..-..++.+.+  .....++.+-.+--+..
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l~sf~~  366 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTLKSFST  366 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc--ccchhhhHHHHHHHHHH
Confidence            3789999999999999999999999999999999988  7778888888888788888888  88888999999999999


Q ss_pred             hchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012519          204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (461)
Q Consensus       204 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~  250 (461)
                      +...+....++....|.++||.++|+......++-++||+++|.+..
T Consensus       367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            98899999999999999999999999999999999999999988765

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.21  E-value=0.00015  Score=72.42  Aligned_cols=159  Identities=15%  Similarity=0.107  Sum_probs=111.2

Q ss_pred             hhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHh
Q 012519          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSL-LALLAMRAVVG  200 (461)
Q Consensus       122 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-~~l~~~r~l~G  200 (461)
                      +......+|.+......+..   ..........+...|++|||..+..+..+..++.++.++...... +...+...+..
T Consensus       341 l~~~~~~lg~~~~~~~~~~~---~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
T KOG0255|consen  341 LSLNVSGLGGNIYLNFTLSG---LVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGK  417 (521)
T ss_pred             hhhhhhhcCchHHHHHHHHH---HHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            33344445544433333333   344555555589999999999999999999999999988832222 24555666666


Q ss_pred             hhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       201 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      ++.+..+.....+.+|.+|...|+.+.+..+....+|.+++|.+...... ......+.+.+..+.+..++...+.||+.
T Consensus       418 ~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  418 FFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            66677777789999999999999999999999999999999988765544 22222333346666666666667777776


Q ss_pred             CCCC
Q 012519          281 DRHP  284 (461)
Q Consensus       281 ~~~~  284 (461)
                      ....
T Consensus       497 ~~~l  500 (521)
T KOG0255|consen  497 GKPL  500 (521)
T ss_pred             CCCC
Confidence            5543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.20  E-value=7.1e-05  Score=72.08  Aligned_cols=126  Identities=20%  Similarity=0.230  Sum_probs=112.4

Q ss_pred             hhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhh-hhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh
Q 012519          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG-TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (461)
Q Consensus       122 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (461)
                      .-.+...++++..+.+...+...+...+++++.. .+...+|-|+++..|++.-.+...+.+++  ++.|+++...++.+
T Consensus       265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--~~~w~~~~~~v~~~  342 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--TETWMMFAAGVVVA  342 (463)
T ss_pred             EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--ccchhhhHHHHHHH
Confidence            4456678999999999888888888888888877 77788999999999999999999999999  99999999988888


Q ss_pred             hhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012519          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (461)
Q Consensus       201 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~  250 (461)
                      +. ....++..+.++.+..++++|+++++......+..+++|.+-+.+..
T Consensus       343 ~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  343 LA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            76 55789999999999999999999999999999999999998887754

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.17  E-value=0.00031  Score=66.44  Aligned_cols=282  Identities=10%  Similarity=-0.015  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhhhh--cCCCchhHHHHHHHHHHHHHHhHhhhhhhhh-----hhcchHHHHH-HHHH
Q 012519          102 SMLALALALCNADRVVMSVAIVPLSLA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-----YYGGKIIMAW-GVAL  173 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~  173 (461)
                      .++.+.+++.+.-.+.....+|.+.++  -+.+.+|.+...-+ ...+. .-+++.++.|     |+||||..++ .-.+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l   80 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL   80 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence            345566777766655555567888877  67788887755321 11221 3455556655     8999986544 3333


Q ss_pred             HHHHHHHhhccc-----------------c---cc--HHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHH
Q 012519          174 WSLATFLTPWAA-----------------D---TS--LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM  231 (461)
Q Consensus       174 ~~i~~~~~~~~~-----------------~---~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~  231 (461)
                      .++..+..+...                 .   ++  ...+....++.=+-.+.-..++-.+.-....+++++.|..-..
T Consensus        81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt  160 (544)
T PF13000_consen   81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT  160 (544)
T ss_pred             HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence            333333322210                 0   01  1122233333333445555666666666777788777776666


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-c---Cch------------hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHH
Q 012519          232 GGFTSGNAIGLVLSPILMSQ-A---GIF------------GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL  295 (461)
Q Consensus       232 ~~~~~G~~~g~~~~~~l~~~-~---gwr------------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (461)
                      .+.++|..++-.+.-.+-+. +   -+|            .-..+.+.+.++.-+...++.+|.|......+.+..+...
T Consensus       161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~  240 (544)
T PF13000_consen  161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD  240 (544)
T ss_pred             hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence            66666666655444333210 0   011            1223344444455555566666655332111111000000


Q ss_pred             HhhcCc--cccCCC----CC---CCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhh
Q 012519          296 REKQKP--LLMGNK----HK---PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFS  366 (461)
Q Consensus       296 ~~~~~~--~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~  366 (461)
                      ++.++.  ...+..    ++   -+.....+.+++|-|++..+.+..+..-.++.+...-...=+.+ .|++.++.+.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~  319 (544)
T PF13000_consen  241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLV  319 (544)
T ss_pred             ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHH
Confidence            000000  000000    00   11122334567788999988888888888877777666666777 499988776554


Q ss_pred             hhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          367 AVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       367 ~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      .    ..+...++.|+++.|+-+.
T Consensus       320 l----i~~P~qii~~~~~~Kws~g  339 (544)
T PF13000_consen  320 L----IDFPFQIILPYYIGKWSAG  339 (544)
T ss_pred             H----HhhhHHHHHHHHhhhhhcC
Confidence            3    3566666777776666543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.07  E-value=2e-05  Score=55.25  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      .+-..+++.+.+...+..++|.|+++ .|+++.+.|.+.++..+..+++.++.|.++||.+++
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            44566778888888999999999998 599999999999999999999999999999999988

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.04  E-value=3.8e-05  Score=72.89  Aligned_cols=108  Identities=10%  Similarity=-0.097  Sum_probs=79.9

Q ss_pred             HHHhHHHHHHHhhCCCccc-cchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccCh
Q 012519          343 ILSWMPIYFNFVYHIDLRQ-ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS  421 (461)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (461)
                      ...+...++.+.+|++..+ .|.+...+..+..+..+.+|+++||+|.|         .++..+.+.-++..++..+.++
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K---------~vL~l~~l~Wsl~t~L~~fa~S  114 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK---------PVLVLQALSFVCVWLLLLLGTS  114 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666678999999 99999999999999999999999999988         3445555555555555555555


Q ss_pred             hHHHHHHHHHHHHHHhhhhhchhHhhhhhcc-cccccccC
Q 012519          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (461)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g  460 (461)
                      .....+.-++.+.+.+... ....++...+| ++|++++|
T Consensus       115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~rats  153 (511)
T TIGR00806       115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAA  153 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHH
Confidence            6555556566666666666 77777777776 56888765

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.02  E-value=0.014  Score=55.37  Aligned_cols=279  Identities=10%  Similarity=-0.013  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhc---CCCchhHHHHHHHHHH-HHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAH---GWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      .+..++.+.+..++..+.....-.    +.+.+   ...++.+.++-+..-+ +..+..++.+++.+++.+.+++-+.+.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR~----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~  100 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLRS----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG  100 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            445555556666655554444433    34444   3457778888888888 678889999999999999999988888


Q ss_pred             HHHHHHHHhhccc-------ccc-----------------------HHHHHHHHHHHhhhhhchhh-HHHHHHHhhcCch
Q 012519          173 LWSLATFLTPWAA-------DTS-----------------------LLALLAMRAVVGLAEGVALP-AMNNMVARWFPQT  221 (461)
Q Consensus       173 ~~~i~~~~~~~~~-------~~~-----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~  221 (461)
                      .+....+++++.-       +++                       .|..-+..++.=+=...... .-.....|.+..+
T Consensus       101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~  180 (509)
T COG3202         101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE  180 (509)
T ss_pred             HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            8888777777651       112                       12222222222222222222 4556678899889


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHH
Q 012519          222 ERARAVAIAMGGFTSGNAIGLVLSPILMSQAG----------IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL  291 (461)
Q Consensus       222 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g----------wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (461)
                      +-.|..++++.+.+++..++..+..++..+..          -+..+.+.+..+++...+..+.-+...++.....+...
T Consensus       181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~  260 (509)
T COG3202         181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK  260 (509)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc
Confidence            99999999999999999999988888866321          23344444444444444444432222222111100000


Q ss_pred             HHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCcccc---chhhhh
Q 012519          292 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQA---SWFSAV  368 (461)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~~~  368 (461)
                             +    .+..+.+......++.+.|+|.++.+.+...+++.....+....-.-.++.+-...+..   |.+...
T Consensus       261 -------k----k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~  329 (509)
T COG3202         261 -------K----KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIW  329 (509)
T ss_pred             -------c----cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHH
Confidence                   0    00112222334567788888998888888888887777765444343444333222222   223333


Q ss_pred             hHHH-HHHHHHHHHHhhhhHhhc
Q 012519          369 PWSV-MAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       369 ~~~~-~~i~~~~~g~l~dr~~~~  390 (461)
                      .++. .++...+++.+.+|.|-.
T Consensus       330 tgvv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         330 TGVVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhHH
Confidence            3333 344556777777777754

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.95  E-value=0.0007  Score=63.41  Aligned_cols=116  Identities=12%  Similarity=0.015  Sum_probs=83.8

Q ss_pred             cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH---HHHHhhccccccHHHHHHHHHHHhhhhhc
Q 012519          129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL---ATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (461)
Q Consensus       129 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i---~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  205 (461)
                      +.-...+..+...+|.+|..++.--...+  |+-+-+.+.+-..+..+   ...+.-+.  ++.|.+++.-+..|+..|.
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fi--psi~ivf~lif~eGLlGGa  351 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFI--PSIWIVFVLIFYEGLLGGA  351 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHhhhH
Confidence            33346778888888888877764433222  33222222222222222   22234445  8899999999999999999


Q ss_pred             hhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      .+......+.|-.++++|..++|....+-++|..++.+++-.+
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887655

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.74  E-value=0.0015  Score=62.01  Aligned_cols=142  Identities=16%  Similarity=0.080  Sum_probs=108.0

Q ss_pred             hhHHHHHHHHHHHHHHhHhhhhhhhhhhcch-------HHHHHHHHHHHHHHHHhhcc--------ccccHHHHHHHHHH
Q 012519          134 SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK-------IIMAWGVALWSLATFLTPWA--------ADTSLLALLAMRAV  198 (461)
Q Consensus       134 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~--------~~~~~~~l~~~r~l  198 (461)
                      -..+|..+...+...+.+++..++-.+.++|       .=+-+++.+.+.+.++....        ...+.++++...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            4557888888888999999988888885554       23445555555555543322        12478999999999


Q ss_pred             HhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHH------HHhhcCchhHHHHHHHHHHHHHHHH
Q 012519          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI------LMSQAGIFGPFVIFGLSGFLWVLVW  272 (461)
Q Consensus       199 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~------l~~~~gwr~~f~~~~~~~~~~~~~~  272 (461)
                      +++|.=+..|...++++...|+.-.+.+++.+......|..++..+++.      ..+...-...|+..+...++..+..
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988887773      3334455667777777777666554


Q ss_pred             HHh
Q 012519          273 LSA  275 (461)
Q Consensus       273 ~~~  275 (461)
                      +..
T Consensus       484 ~~~  486 (498)
T COG3104         484 LLL  486 (498)
T ss_pred             HHh
Confidence            444

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.74  E-value=0.007  Score=54.14  Aligned_cols=70  Identities=17%  Similarity=0.174  Sum_probs=52.3

Q ss_pred             HHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhc
Q 012519          146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF  218 (461)
Q Consensus       146 ~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  218 (461)
                      ..+...++.+.+..++|-|++++++...........- -  +.+..++-...+.|+|.+..+..--+|+++.-
T Consensus        70 ~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl-~--pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   70 SLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL-E--PRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc-c--hhHHhhccHHHhhccccccccccCcceecHHH
Confidence            3344555555899999999999998888776544332 2  67888999999999999988877666665543

>PRK03612 spermidine synthase; Provisional

Probab=97.74  E-value=0.003  Score=62.34  Aligned_cols=142  Identities=20%  Similarity=0.205  Sum_probs=87.0

Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHH---HHH-HHhhccc-cccH-HHHHHHHHHH
Q 012519          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LAT-FLTPWAA-DTSL-LALLAMRAVV  199 (461)
Q Consensus       126 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~-~~~~~~~-~~~~-~~l~~~r~l~  199 (461)
                      .--+|.+..+.+.+.+++.+|.++|+.+++++.++.-++.. .+-+.+..   ++. ++..... ...+ ..++..-++.
T Consensus        42 ~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         42 SYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33468888899999999999999999999988744333322 11111111   111 1111110 0111 2233445567


Q ss_pred             hhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCchhHHHHHHHHHHHHH
Q 012519          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFGPFVIFGLSGFLWV  269 (461)
Q Consensus       200 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~~f~~~~~~~~~~~  269 (461)
                      |+..|+..|....+..+.. .++-+...|-......+|.++|+++.+++. ..+|-....++.+.+.++..
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            7888888887777666543 234567788899999999999999988764 46775444444444444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.72  E-value=8e-05  Score=69.51  Aligned_cols=124  Identities=12%  Similarity=0.035  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhH
Q 012519          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (461)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (461)
                      .+++...+...--+.+-..++. .++.+|.+....|++...+.+...+..+++|++.||+.|+         .++.++..
T Consensus        37 il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~---------~v~~vG~~  106 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK---------RVIAVGIF  106 (493)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc---------eEEeeHHH
Confidence            3444444444444444443332 3445899999999999999999999999999999999988         34455555


Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccCC
Q 012519          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGI  461 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~gl  461 (461)
                      +-.++.++..+....|...++=.+.+.+.....+...+.++|.+|+ +|++++|+
T Consensus       107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~i  161 (493)
T KOG1330|consen  107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGI  161 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHH
Confidence            5555555555556666666666667777777788999999999996 59887764

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.64  E-value=0.0014  Score=64.99  Aligned_cols=159  Identities=18%  Similarity=0.117  Sum_probs=126.2

Q ss_pred             hhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHHHHHHHHHHHHHHhhcc-------cc--
Q 012519          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWA-------AD--  186 (461)
Q Consensus       117 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~-------~~--  186 (461)
                      .....+..+..+++.+...+.-..+.+.-......+..+.++|- +||-+++.++.++..++.++..+.       +.  
T Consensus        56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~  135 (571)
T KOG1237|consen   56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC  135 (571)
T ss_pred             chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence            34667788888999888888888889988889999999999996 589999999999998886554332       00  


Q ss_pred             -----------cc---HHHHHHHHHHHhhhhhchhhHHHHHHHhhcC---c-hh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 012519          187 -----------TS---LLALLAMRAVVGLAEGVALPAMNNMVARWFP---Q-TE--RARAVAIAMGGFTSGNAIGLVLSP  246 (461)
Q Consensus       187 -----------~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~-~~--r~~~~~~~~~~~~~G~~~g~~~~~  246 (461)
                                 ++   ...++.+.-+..+|.|+.-+...++-+|-++   + ++  +...+.++....++|..++..+..
T Consensus       136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v  215 (571)
T KOG1237|consen  136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV  215 (571)
T ss_pred             cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence                       01   2356677778888999999999999999997   2 22  347888999999999999988888


Q ss_pred             HHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          247 ILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       247 ~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      +.=++.+|.+.|.+..+...+..++.+..
T Consensus       216 yiq~~~~w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  216 YIQDNVGWKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             hhhhcccceeeccHHHHHHHHHHHHHHcC
Confidence            87778899999999888777766655543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.53  E-value=0.00039  Score=60.98  Aligned_cols=114  Identities=19%  Similarity=0.122  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHH
Q 012519          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (461)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (461)
                      ....|.+..|.|..- +.+|+|..+...+.....++..+ .++.|.+.|++|.+         ..+.++.+...++....
T Consensus        15 ~Gt~Y~Fs~yS~~Lk-~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~---------~~l~iG~~~~~~GY~~~   83 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLK-SRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW---------VVLLIGAVLGFVGYGLL   83 (250)
T ss_pred             cCcccchhhhhHHHH-HHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH---------HHHHHHHHHHHHHHHHH
Confidence            334566666666655 45899999999888888888876 48889999999987         34444444444443322


Q ss_pred             h--ccC-----hhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccCC
Q 012519          417 T--AAK-----SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI  461 (461)
Q Consensus       417 ~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  461 (461)
                      .  ...     +.+......+++................+.+|++||++.|+
T Consensus        84 ~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgi  135 (250)
T PF06813_consen   84 WLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGI  135 (250)
T ss_pred             HHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehh
Confidence            2  221     22222222222322223333344444556779999999875

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.49  E-value=0.00025  Score=56.50  Aligned_cols=88  Identities=16%  Similarity=0.038  Sum_probs=56.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhch
Q 012519          364 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF  443 (461)
Q Consensus       364 ~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (461)
                      ++.+...++..++.++.|++.||++||       +  ....+.....+..+.....++.+......++.+...+...+..
T Consensus         2 ~~~~~~~~~~~~~~~~~g~~~d~~g~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   72 (141)
T TIGR00880         2 LLLAGYALGQLIYSPLSGLLTDRFGRK-------P--VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAG   72 (141)
T ss_pred             EEEEeehhHHHHHHhhHHHHHhhcchh-------H--HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhH
Confidence            345566778899999999999999988       2  2233333444444444444555555555555555666666777


Q ss_pred             hHhhhhhccc-ccccccC
Q 012519          444 LVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       444 ~~~~~~~~p~-~~g~~~g  460 (461)
                      .....|..|+ +++++.|
T Consensus        73 ~~~~~~~~~~~~~~~~~~   90 (141)
T TIGR00880        73 AALIADIYPPEERGVALG   90 (141)
T ss_pred             HHHHHHHCChhhhhHHHH
Confidence            7888888874 5776654

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.47  E-value=0.0027  Score=55.04  Aligned_cols=100  Identities=17%  Similarity=0.216  Sum_probs=57.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHH---Hh--hcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHH
Q 012519          221 TERARAVAIAMGGFTSGNAIGLVLSPIL---MS--QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL  295 (461)
Q Consensus       221 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l---~~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (461)
                      |+|+....+...++++|.++.-..--.-   .+  ..+|++.+.+.+++.++.+++..++-.+-....++ ++++     
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~-----   75 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQE-----   75 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-cccc-----
Confidence            4566666666777788877654332111   11  23599999999988887777666653321111111 0000     


Q ss_pred             HhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHH
Q 012519          296 REKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (461)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (461)
                                +.+..........+.+|++..|...+.+...
T Consensus        76 ----------k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~w  106 (267)
T PF07672_consen   76 ----------KENSTLSKKPSYKSILKEKETWKWILIYGIW  106 (267)
T ss_pred             ----------cccccccccchHHHHHccchHHHHHHHHHHH
Confidence                      1111222335678999999998877655543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.40  E-value=0.0011  Score=58.62  Aligned_cols=139  Identities=17%  Similarity=0.161  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHH
Q 012519          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA  215 (461)
Q Consensus       136 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  215 (461)
                      .|.+.-+-.+...+..+.+....||+---.=+.+..++.+.+.++.+++  ++.++-+.+-.+..++.|.....-.++-+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs--~s~~~sL~GV~~aSissGlGEiTFL~lss  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS--NSVPMSLLGVVFASISSGLGEITFLALSS  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec--cchhHHHhhhhhhhhcCCcceeehhhhhc
Confidence            4555556667777778888888888653333445566778888899999  99999888888888888866555444433


Q ss_pred             hhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCchhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012519          216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--AGIFGPFVIFGLSGFLWVLVWLSATSSTPD  281 (461)
Q Consensus       216 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~  281 (461)
                      . ++    ....+.++.+.+.++++|..--..+.+.  +.-|.+.++...+.++.+...++.+++++.
T Consensus       142 ~-Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes  204 (409)
T KOG3880|consen  142 R-YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPES  204 (409)
T ss_pred             c-CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCcc
Confidence            3 32    2455667777777788887766666653  447888888877777767666666655443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.39  E-value=0.014  Score=55.84  Aligned_cols=148  Identities=19%  Similarity=0.119  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  180 (461)
                      ++...++..+-++....++..+..+...-|+++..+|..-+...+....+.+...++.+|+|..|.=+++...-.++..+
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~  339 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL  339 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence            44445555555555555566666666666999999999999999999999999999999999888777766644433332


Q ss_pred             hh---cccc-c----cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          181 TP---WAAD-T----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       181 ~~---~~~~-~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      +.   +.+. +    +...++.+-++.=+|.=+..-...-++.|..|+++||...|.-.+..++--++-..++-.+
T Consensus       340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            22   1211 2    3334444444444554466778888999999999999999999999988877766655433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.37  E-value=0.0048  Score=57.48  Aligned_cols=122  Identities=13%  Similarity=-0.005  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHH----HHhHhhhhhhhhhhcchHHHHHHHHHHH
Q 012519          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGY----LVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (461)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~----~~~~~~~g~l~dr~Grr~~~~~~~~~~~  175 (461)
                      .....++..+-....+..+..+.+++.+++-.+.. .......+.+..    .+....-..+.-|. |+++.........
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~i   96 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAI   96 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            33444444444555666777777888877744433 333333333333    33444444444452 2222111111111


Q ss_pred             HHHHHhhcc-------ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhh
Q 012519          176 LATFLTPWA-------ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERA  224 (461)
Q Consensus       176 i~~~~~~~~-------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~  224 (461)
                      +..+.+.++       ....++..++.-++.|++.|..+...+...++. |+|.-+
T Consensus        97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytq  151 (406)
T KOG1479|consen   97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQ  151 (406)
T ss_pred             HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHH
Confidence            111112221       123466677777888899888888877777766 555433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.35  E-value=0.00063  Score=63.52  Aligned_cols=175  Identities=11%  Similarity=0.033  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhc-chHHHHHHHHHHHHHHHHhh
Q 012519          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-GKIIMAWGVALWSLATFLTP  182 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~  182 (461)
                      +.+.+.......+.....+....+.-|.+....|++.....++.++++...|.+.||.. .|.++++......++.....
T Consensus       271 l~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~  350 (480)
T KOG2563|consen  271 LAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLL  350 (480)
T ss_pred             HHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344555555444555666688999999999999999999999999976 45566666666666632211


Q ss_pred             -cc-ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---chh-
Q 012519          183 -WA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---IFG-  256 (461)
Q Consensus       183 -~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g---wr~-  256 (461)
                       +. .....+.++....+.|++.....|...-+-.|..-|..-+.-.|+.....++=+++-..+-+.+.+..+   |.. 
T Consensus       351 ~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~  430 (480)
T KOG2563|consen  351 TCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFP  430 (480)
T ss_pred             HhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCcc
Confidence             11 112345566667788888888899888888876534444566677666666555555666666666554   333 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Q 012519          257 PFVIFGLSGFLWVLVWLSATSS  278 (461)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~  278 (461)
                      .-+......++..++..++.|+
T Consensus       431 ~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  431 ANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             chhHhHHHHHHHHHHHhhhhhh
Confidence            3333444444444455555433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.35  E-value=0.00034  Score=71.04  Aligned_cols=52  Identities=2%  Similarity=-0.132  Sum_probs=41.8

Q ss_pred             HHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      ...++....-.-+++.++++..+.|++.+...++.+++.++.+++.||.+||
T Consensus        47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~   98 (633)
T TIGR00805        47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP   98 (633)
T ss_pred             HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc
Confidence            3333433333445566899999999999999999999999999999999988

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.33  E-value=0.0033  Score=60.83  Aligned_cols=123  Identities=15%  Similarity=0.103  Sum_probs=99.5

Q ss_pred             CCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhcc--------ccccHHHHHHHHHHHhhh
Q 012519          131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--------ADTSLLALLAMRAVVGLA  202 (461)
Q Consensus       131 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--------~~~~~~~l~~~r~l~G~~  202 (461)
                      .++...+.+..+..++..++..+.....-+..-|+++.++.++..+..+.....        ..++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            889999999999999999999999888888899999988888877766542211        012333344455667777


Q ss_pred             hhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012519          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (461)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  253 (461)
                      .+..+-....+++|..|+..-|...++..+..++|..++..++..+.+.++
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            777777888999999999999999999999999999999999999988765

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.029  Score=53.77  Aligned_cols=111  Identities=15%  Similarity=0.202  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhh---hhcchHHHHHHHHHHHHHHHHhhccc----------------cccHHHHHHHHH
Q 012519          137 GIVQSSFLWGYLVSPIAGGTLVD---YYGGKIIMAWGVALWSLATFLTPWAA----------------DTSLLALLAMRA  197 (461)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~g~l~d---r~Grr~~~~~~~~~~~i~~~~~~~~~----------------~~~~~~l~~~r~  197 (461)
                      +...-...++..++..+.+.+.+   ++||++.+.++..+..++.++.-...                .+++...++.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            33334455555666666777765   58999999999999988888765441                124667788889


Q ss_pred             HHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       198 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      +.|++.+......+.++++.+ +++|..+.++.-.-..++..++-......
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999999 58899999999888888887766554443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.15  E-value=0.029  Score=54.16  Aligned_cols=52  Identities=12%  Similarity=0.171  Sum_probs=35.6

Q ss_pred             cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHH
Q 012519          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL  244 (461)
Q Consensus       188 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~  244 (461)
                      .++..++.-++.|++.+..+....++.+ .+|++    .++.+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            4667777788899999988888888777 45544    3455555666666555543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.95  E-value=0.06  Score=51.99  Aligned_cols=112  Identities=15%  Similarity=0.054  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhcch-HHHHHHHHH---HHHHHHHhhccc-------cccHHHHHHHHHHHhhhhh
Q 012519          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGK-IIMAWGVAL---WSLATFLTPWAA-------DTSLLALLAMRAVVGLAEG  204 (461)
Q Consensus       136 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-~~~~~~~~~---~~i~~~~~~~~~-------~~~~~~l~~~r~l~G~~~g  204 (461)
                      .-.....+.++-.+|..+..+.. .-++| +.+.+..+.   +....++|..-+       -++-+..++..++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            34556677777777776554321 11222 122222222   222233333210       1466777777999999999


Q ss_pred             chhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          205 VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       205 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      -....+..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998875444

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.59  E-value=0.012  Score=41.79  Aligned_cols=76  Identities=17%  Similarity=0.219  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHH
Q 012519          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (461)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (461)
                      ..+-+.+...+|...++ .++|..+.+++.+...++.++|.+...++.++.+++         .++..+++...+..+..
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR---------RLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHH
Confidence            34556677788888877 599999999999999999999999999988875444         34455556666655555


Q ss_pred             hccChh
Q 012519          417 TAAKSP  422 (461)
Q Consensus       417 ~~~~~~  422 (461)
                      ...++.
T Consensus        75 a~~~~~   80 (85)
T PF06779_consen   75 ALTHSF   80 (85)
T ss_pred             HHHhch
Confidence            555443

Note that many members are hypothetical proteins.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.34  E-value=0.012  Score=56.52  Aligned_cols=179  Identities=11%  Similarity=0.095  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHhh-hhhhhhhcCCCchhHHHHHH----HHHHHHHHhHhhhhhhh-hhhcchHHHHH
Q 012519           96 ERVKVVSMLALALALCNADRVVMSVA-IVPLSLAHGWSRSFSGIVQS----SFLWGYLVSPIAGGTLV-DYYGGKIIMAW  169 (461)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~~~~~~~~s----~~~~~~~~~~~~~g~l~-dr~Grr~~~~~  169 (461)
                      ..|....++.+..+............ -+.....++++.++.-+..+    +..+-.....+..+... -++..|+.++.
T Consensus       259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~  338 (488)
T KOG2325|consen  259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILL  338 (488)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeee
Confidence            34555555555555555544443333 33344456776666544433    22222222222222222 23344555555


Q ss_pred             HHHHHHHHHHHhhcc----c-------------------------cccHHHHHHHH-HHHhhhhhchhhHHHHHHHhhcC
Q 012519          170 GVALWSLATFLTPWA----A-------------------------DTSLLALLAMR-AVVGLAEGVALPAMNNMVARWFP  219 (461)
Q Consensus       170 ~~~~~~i~~~~~~~~----~-------------------------~~~~~~l~~~r-~l~G~~~g~~~~~~~~~i~~~~~  219 (461)
                      +.++......+.-+-    .                         ..+++.++++. ++.|++.-.......++-+|...
T Consensus       339 g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLg  418 (488)
T KOG2325|consen  339 GFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILG  418 (488)
T ss_pred             hHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhC
Confidence            544444333322111    0                         01233344443 45677766777788899999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 012519          220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (461)
Q Consensus       220 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  274 (461)
                      +++++.+.++++....++..+||++........|.|+...+.+...++...++..
T Consensus       419 p~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~  473 (488)
T KOG2325|consen  419 PRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV  473 (488)
T ss_pred             CccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877766665554444433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.97  E-value=0.19  Score=47.49  Aligned_cols=100  Identities=11%  Similarity=-0.003  Sum_probs=75.0

Q ss_pred             CchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHH--HHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhH
Q 012519          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA--WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPA  209 (461)
Q Consensus       132 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~--~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  209 (461)
                      ...--|.+-++..+..+++++..|++-.++.+-.-+.  +..++.+...++.++.  +|.|..+++-++.+.......+.
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t--~~Iwv~Y~~yIif~~~y~fliTi  360 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT--GNIWVCYAGYIIFRSLYMFLITI  360 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344588888888999999999999977777654333  3334444555566777  99999999999988888888888


Q ss_pred             HHHHHHhhcCchhhhHHHHHHHHH
Q 012519          210 MNNMVARWFPQTERARAVAIAMGG  233 (461)
Q Consensus       210 ~~~~i~~~~~~~~r~~~~~~~~~~  233 (461)
                      +..-++.....+.-|..+|+....
T Consensus       361 A~~qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  361 ASFQIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHHHHHhccccceeeeeeeHHHH
Confidence            888888888777777777765543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.78  E-value=0.29  Score=45.04  Aligned_cols=38  Identities=18%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             HhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          353 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       353 ~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      +.+|++..+++.++....+.+++...+.|.+.||+|||
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk   99 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK   99 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            34799999999999999999999999999999999998

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.73  E-value=0.0027  Score=62.97  Aligned_cols=153  Identities=14%  Similarity=0.125  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhh-hhhhhcCCCchhHHHHHHHHHH-HHHHhHhhhhhhhhhhc--chHHHHHHHHHH
Q 012519           99 KVVSMLALALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYG--GKIIMAWGVALW  174 (461)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~  174 (461)
                      .++....++..........+....| +++.+|+.++++++++.++..+ +.++|.+++|++..|+.  .|..+....+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            3455556666666665555666665 5666899999999999876666 66789999999999875  445544444444


Q ss_pred             HHHHHH---hhcc------------cc-------------------------------------ccHHHHHHHHHHHhhh
Q 012519          175 SLATFL---TPWA------------AD-------------------------------------TSLLALLAMRAVVGLA  202 (461)
Q Consensus       175 ~i~~~~---~~~~------------~~-------------------------------------~~~~~l~~~r~l~G~~  202 (461)
                      .++.++   ..+.            +.                                     +++..+++..++.-+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            433332   0000            00                                     0123344444444444


Q ss_pred             hhchhhHHHHHHHhhcCchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 012519          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGF-TSGNAIGLVLSPILMSQ  251 (461)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~G~~~g~~~~~~l~~~  251 (461)
                      .+........++-+.+|+++|..++|+..... -+|.+-||++.|.++|.
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            55555556666678889999999999987554 56889999999999885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.97  E-value=1.5  Score=38.66  Aligned_cols=136  Identities=13%  Similarity=0.079  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhcch--HHHHHHHHHHHHHHHHhh----cccc-ccHHHHHHHHHHHhhhhhchhh
Q 012519          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALWSLATFLTP----WAAD-TSLLALLAMRAVVGLAEGVALP  208 (461)
Q Consensus       136 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~----~~~~-~~~~~l~~~r~l~G~~~g~~~~  208 (461)
                      -|.+.+.++++.++|+-+..++..|-..|  ..+.+..++..+...+..    .++. .+...-+++.++.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48899999999999999999998876655  345554444444433322    2210 1222334555566677888999


Q ss_pred             HHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 012519          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       209 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  271 (461)
                      ....+=+++.|++.|...+.++-.-.++=..++-..--.=....+-|..|-++.....+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            999999999999999999998766555433332111000001234678888877776665443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=93.97  E-value=1.3  Score=42.68  Aligned_cols=64  Identities=9%  Similarity=0.003  Sum_probs=51.9

Q ss_pred             HHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 012519          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (461)
Q Consensus       192 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr  255 (461)
                      +++..++.-+..-..+.+..++-+.+.+|.-=|+.|.+.++..++|+---..+.-++++++.++
T Consensus       408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~  471 (544)
T PF13000_consen  408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA  471 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence            4445677778778888999999999999999999999999999999876666666666665555

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.60  E-value=1.2  Score=36.16  Aligned_cols=116  Identities=9%  Similarity=-0.065  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhC-----CCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhH
Q 012519          333 NAMHSWGFFVILSWMPIYFNFVYH-----IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (461)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g-----~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (461)
                      .++.+.++..........+++...     .+....-.-.++......++.++.+.+.+++|.|         +.+.++.+
T Consensus         5 f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~   75 (156)
T PF05978_consen    5 FMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSL   75 (156)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHH
Confidence            334444444444444444443321     2222233345666677788889999999999987         45555555


Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccc
Q 012519          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVL  458 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~  458 (461)
                      ...+...... .++.+..+..-.+.+...+..+...-.++.+...+ .+++-
T Consensus        76 ~y~~y~~~~~-~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~  126 (156)
T PF05978_consen   76 GYAIYIASFF-YPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRN  126 (156)
T ss_pred             HHHHHHHHHH-hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhH
Confidence            5554444433 33455555555556666666666666666666543 35443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.31  E-value=0.029  Score=51.63  Aligned_cols=108  Identities=16%  Similarity=0.003  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhh-cchHHHHHHHHHHHH---HHHHhhccc--------cccHHHHHHHHHHHhhhhhc
Q 012519          138 IVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSL---ATFLTPWAA--------DTSLLALLAMRAVVGLAEGV  205 (461)
Q Consensus       138 ~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i---~~~~~~~~~--------~~~~~~l~~~r~l~G~~~g~  205 (461)
                      ....++.++-.+|..+.++..-+- .+|++. +..+.-.+   ..++|..-+        -+|-+..++.-++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            345678888888888776642111 244433 32222222   122221110        14556777788999999999


Q ss_pred             hhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012519          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSP  246 (461)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~  246 (461)
                      ....++.+..+..++++|..+-.+...+..+|..+|..++-
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             --HHHH-----------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888888888888877654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=92.96  E-value=1.1  Score=42.28  Aligned_cols=113  Identities=17%  Similarity=0.085  Sum_probs=77.1

Q ss_pred             CchhHHHHHHH-HHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHH-h------hccccccHHHHHHHHHHHhhhh
Q 012519          132 SRSFSGIVQSS-FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-T------PWAADTSLLALLAMRAVVGLAE  203 (461)
Q Consensus       132 s~~~~~~~~s~-~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~------~~~~~~~~~~l~~~r~l~G~~~  203 (461)
                      +..-.-++..+ +.+.-.+|.+.+.++-+.=.|+......+=...+-.+. |      .+-  .+-+++++.-.+.|+..
T Consensus       280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~--~~~~~~~~l~~~lglsn  357 (406)
T KOG1479|consen  280 GDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVF--ESDGWFIFLMSLLGLSN  357 (406)
T ss_pred             chhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCcee--cCchHHHHHHHHHHhcc
Confidence            34444555566 88888888777777666533332322222222333332 1      122  56777888899999999


Q ss_pred             hchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012519          204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSP  246 (461)
Q Consensus       204 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~  246 (461)
                      |=.....+.+..+-+|++++..+-.+.......|...|..++.
T Consensus       358 GYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  358 GYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             chHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            9888889999999999999888888888888888888777653

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=92.44  E-value=2.3  Score=39.50  Aligned_cols=167  Identities=13%  Similarity=0.070  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCc-hhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 012519          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSR-SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (461)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  179 (461)
                      .+.+.+++++.....-++......++.+++-+. ...+.-...-.....+..++.|...|+..|+|++...+.+--++.+
T Consensus        29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~  108 (503)
T KOG2601|consen   29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVI  108 (503)
T ss_pred             eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHH
Confidence            345677888877777777777777777776433 2333333344455667788889999999999998877665433322


Q ss_pred             ------Hhhcccc----ccHHHHHHHHHHHhhhhhc--hhhHHHHH--HHhhc----CchhhhHH---HHHHHHHHHHHH
Q 012519          180 ------LTPWAAD----TSLLALLAMRAVVGLAEGV--ALPAMNNM--VARWF----PQTERARA---VAIAMGGFTSGN  238 (461)
Q Consensus       180 ------~~~~~~~----~~~~~l~~~r~l~G~~~g~--~~~~~~~~--i~~~~----~~~~r~~~---~~~~~~~~~~G~  238 (461)
                            +..+.+.    .++..+..+-++.-...+.  ....+.++  -.||.    ..+.+...   .+..-..=..-.
T Consensus       109 vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn  188 (503)
T KOG2601|consen  109 VAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTN  188 (503)
T ss_pred             HHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhh
Confidence                  2223321    2444444443333222221  11111111  12343    22333333   355555555667


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 012519          239 AIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (461)
Q Consensus       239 ~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  267 (461)
                      .+.|.+.|.+.+..+-|..-.+.++..++
T Consensus       189 ~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  189 LLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             chhhhhhcccceeechhhhhhhhHHHHHH
Confidence            89999999999888888766666666555

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=92.36  E-value=1.1  Score=40.22  Aligned_cols=118  Identities=14%  Similarity=0.028  Sum_probs=79.3

Q ss_pred             hhcCCC-chhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHH---HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhh
Q 012519          127 LAHGWS-RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII---MAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLA  202 (461)
Q Consensus       127 ~~~~~s-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~---~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~  202 (461)
                      +.+..+ ..|+-|....|.+|..+..--.-..--+  .-+.   +-.-.+++.+...+..+.  +++|..++.-+.-|+-
T Consensus       280 ~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ft--psi~ivf~lI~~EGLl  355 (409)
T KOG3880|consen  280 HGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFT--PSIWIVFALILFEGLL  355 (409)
T ss_pred             cCCccchhhcchhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhc
Confidence            334433 3468899988888765432211111101  1112   222233344445556677  9999999999999998


Q ss_pred             hhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      .|..+....--+.+-.++++|-.+++.....-++|..++..++-.+
T Consensus       356 GGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  356 GGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             CchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            8888888888888878889999999999999888888877765433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.68  E-value=14  Score=36.15  Aligned_cols=73  Identities=12%  Similarity=0.043  Sum_probs=57.6

Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  268 (461)
                      -++.|+.........-..+.+.+| +++|...+|-++...++..++..++++.+.+.+||.....+.-++.++.
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            345566666777777788888886 4578999999999888888777777799999999999888877666554

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=91.15  E-value=1.5  Score=39.63  Aligned_cols=106  Identities=12%  Similarity=0.009  Sum_probs=59.0

Q ss_pred             HHHHHHHHhHHHHHHHhhCCCc--cccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHH
Q 012519          338 WGFFVILSWMPIYFNFVYHIDL--RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (461)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (461)
                      ..........+.+..+. +.+.  ...++......+...++.++.|.+.||.|||       +........  .....+.
T Consensus        16 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~--~~~~~~~   85 (338)
T COG0477          16 LDLGLLSPALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR-------KVLIIGLLL--FLLGTLL   85 (338)
T ss_pred             HhcchHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch-------HHHHHHHHH--HHHHHHH
Confidence            33344445566665553 4444  3577888888888888889999999999777       222222221  1222222


Q ss_pred             HhccCh--hHHHHHHHHHHHHHHhhhhhchhHhhhhhccc
Q 012519          416 LTAAKS--PVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ  453 (461)
Q Consensus       416 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  453 (461)
                      ......  ...........+...+...+....+..+..|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  125 (338)
T COG0477          86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPE  125 (338)
T ss_pred             HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence            222222  33333333333444455566777777777775

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=91.13  E-value=19  Score=36.45  Aligned_cols=32  Identities=16%  Similarity=-0.020  Sum_probs=16.9

Q ss_pred             CccccchhhhhhHHHHHHHHHHHHHhhhhHhh
Q 012519          358 DLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (461)
Q Consensus       358 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~  389 (461)
                      ++...+..+..++++..+--++.+....|+.+
T Consensus       323 ~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lp  354 (571)
T PRK00293        323 DLLLGGLTLYLLALGMGLPLILITTFGNKLLP  354 (571)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33444555666666665555555555544433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=90.63  E-value=0.2  Score=47.42  Aligned_cols=129  Identities=14%  Similarity=0.017  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHh
Q 012519          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR  216 (461)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  216 (461)
                      .|-..++.+...+.++...++.||+|-|+.+..+...+.++..+.++.  ++.+....-+-..|+-.+.....-+..+++
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~--~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~  412 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLV--LNTYVVLSHRSTAGILSSPLLTVPYGALAL  412 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhh--hhHHHHHHHHhhcceeecchhcccHHHHHH
Confidence            355567777888899999999999998777777777788888888888  888888888888886555555544444444


Q ss_pred             hcCc-----------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHH
Q 012519          217 WFPQ-----------------------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFL  267 (461)
Q Consensus       217 ~~~~-----------------------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~  267 (461)
                      +.-.                       ..+|...|+.++...+.+++.....|.+.+.+| =+.+-++.+.+++.
T Consensus       413 y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~  487 (498)
T KOG0637|consen  413 YAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL  487 (498)
T ss_pred             HHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence            3211                       235777788888888888888888888877766 34444444444443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=90.55  E-value=4.6  Score=35.60  Aligned_cols=103  Identities=14%  Similarity=0.145  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHH----HHHHHHHHHHHHhhcc-ccc--cHHHHHHHHHHHhhhhhchhh
Q 012519          137 GIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMA----WGVALWSLATFLTPWA-ADT--SLLALLAMRAVVGLAEGVALP  208 (461)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~----~~~~~~~i~~~~~~~~-~~~--~~~~l~~~r~l~G~~~g~~~~  208 (461)
                      ....-++..|..+|.+..|+.... +.||+.+.    .+++++.+..+..+.. ..+  ++..+++.-++.|++.=+.++
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            444556667777777777888774 55666433    3455555554442122 112  366788888888877544444


Q ss_pred             HHHHHHHhhcCchhhhHHHHHHHHHHHHHHHH
Q 012519          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAI  240 (461)
Q Consensus       209 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  240 (461)
                      +...+ ..-++..++.+.--.++..+++|.++
T Consensus       224 ViL~l-PhEyK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  224 VILNL-PHEYKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HHhcC-hhhhcCCCcceehhHHHHHHHHHHHH
Confidence            33322 22222222223333334445555444

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=89.96  E-value=1.2  Score=45.47  Aligned_cols=52  Identities=10%  Similarity=0.190  Sum_probs=42.2

Q ss_pred             HHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhc
Q 012519          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (461)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (461)
                      .+|++...+..|+.+.+|++...+..+...+....-+..+++|+++|++-.+
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~   53 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK   53 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4566777788888888899988888888888888888889999999976544

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=89.26  E-value=0.097  Score=45.40  Aligned_cols=63  Identities=3%  Similarity=0.075  Sum_probs=43.9

Q ss_pred             hHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHH
Q 012519          316 PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGY  378 (461)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~  378 (461)
                      +|..-|++-.+.-+.+.+.+.-...+.-..|++.|..+..+++....+++-.+..++....+.
T Consensus       193 ~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~  255 (412)
T KOG4830|consen  193 HWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSM  255 (412)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHh
Confidence            444556676777788888888888888888999998887777766655655555555444443

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=87.99  E-value=16  Score=31.29  Aligned_cols=43  Identities=21%  Similarity=0.270  Sum_probs=24.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 012519          221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (461)
Q Consensus       221 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~  264 (461)
                      +++.+--.......-++..+|..+++.+.+..+.. ..++.+.+
T Consensus       158 ~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~-al~~~~~~  200 (209)
T PF06912_consen  158 KDRALRRALRYLLIILSFFIGAILGALLYRRLGFW-ALLLPALL  200 (209)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence            33333444455556666777777777777777743 44443333

The function of this family is unknown although a few members are thought to be membrane proteins.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=87.80  E-value=0.17  Score=46.62  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHH
Q 012519          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (461)
Q Consensus       197 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  242 (461)
                      ++.|++.+..+...+++.+. +|++.    +.....+.++++++..
T Consensus         5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s   45 (309)
T PF01733_consen    5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVS   45 (309)
T ss_dssp             ----------------------------------------------
T ss_pred             EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHH
Confidence            45677777777777777775 55544    3344444555554443

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=87.03  E-value=25  Score=32.54  Aligned_cols=148  Identities=18%  Similarity=0.190  Sum_probs=86.7

Q ss_pred             hhhhhhhc-CCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH-------HHHHhhccccccHHHHH
Q 012519          122 IVPLSLAH-GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL-------ATFLTPWAADTSLLALL  193 (461)
Q Consensus       122 ~~~i~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i-------~~~~~~~~~~~~~~~l~  193 (461)
                      +..+...+ |-.--|.+++.+.|.....+|+...-++.|.--.-+.+.+-.++..+       ..+.+++-..++-+.++
T Consensus        30 l~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly  109 (508)
T COG4262          30 LGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLY  109 (508)
T ss_pred             HHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHH
Confidence            33344433 55677899999999999999999988888753333222222222211       12223332235677888


Q ss_pred             HHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCchhHHHHHHHHHHHHHHH
Q 012519          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL-MSQAGIFGPFVIFGLSGFLWVLV  271 (461)
Q Consensus       194 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l-~~~~gwr~~f~~~~~~~~~~~~~  271 (461)
                      +.-++.|.-.|...|..+.++..-.  .+-....+.....-.+|...+.++-.++ ....|---.-...+++.++..+.
T Consensus       110 ~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv  186 (508)
T COG4262         110 ALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVV  186 (508)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999887732  1222222233333566766666665554 33445333333445555554433

>PRK03612 spermidine synthase; Provisional

Probab=85.39  E-value=16  Score=36.54  Aligned_cols=58  Identities=12%  Similarity=-0.018  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhh
Q 012519          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM  386 (461)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr  386 (461)
                      +.+..++..++...........+...+|.+....+.+.+++.++..+|+.+++++.++
T Consensus        19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3444555566666666666677777778888888888888888888888887776533

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.78  E-value=3.8  Score=41.96  Aligned_cols=79  Identities=15%  Similarity=0.136  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhh-hhhhhcCCCchhHHHHHHHHHH-HHHHhHhhhhhhhhhhc--chHHHHHHHHHHH
Q 012519          100 VVSMLALALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYG--GKIIMAWGVALWS  175 (461)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~  175 (461)
                      +..+..++..+......-+...+| ++.++|+.+.+.+..+.+...+ +.++|.+++|++..|+-  .|.+..+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            455566666666665555666666 4666899999999999865555 45788889999999864  4555444444444


Q ss_pred             HHH
Q 012519          176 LAT  178 (461)
Q Consensus       176 i~~  178 (461)
                      +..
T Consensus       473 l~l  475 (735)
T KOG3626|consen  473 LSL  475 (735)
T ss_pred             HHH
Confidence            433

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=82.81  E-value=21  Score=35.61  Aligned_cols=71  Identities=8%  Similarity=0.200  Sum_probs=33.9

Q ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhh
Q 012519          318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (461)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~  389 (461)
                      .++||.|+- ...+..++...............+....-+++..-|.+.....+.-++.++++|+.+-|+-+
T Consensus       252 gDVFR~P~~-~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk  322 (521)
T PF02990_consen  252 GDVFRPPKH-PMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYK  322 (521)
T ss_pred             HHHhcCcCC-chHHHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            377877652 22222333333333333333333333222455555555555555556666666666665543

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=82.43  E-value=14  Score=34.18  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHH--HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHHHH
Q 012519          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW--GVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV  214 (461)
Q Consensus       137 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~--~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  214 (461)
                      |..-++..+..+++.+..|.+--.+.|..-+++  +.+.-+...++++..  ++.|..+++.++-+.-.....+.+..-+
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t--~~Iw~~Ya~yvlfr~~y~l~itiA~~~i  351 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT--QHIWVCYAGYVLFRVIYQLTITIATFQI  351 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc--cceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence            555566777788889999999888877654444  434444444455555  8999999988888887787888888888


Q ss_pred             HhhcCchhhhHHHHHHHHH
Q 012519          215 ARWFPQTERARAVAIAMGG  233 (461)
Q Consensus       215 ~~~~~~~~r~~~~~~~~~~  233 (461)
                      ++....+.-|..+|+....
T Consensus       352 A~nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  352 ARNLSSELFGLVFGINTFV  370 (433)
T ss_pred             HHhhhhhhheeeeehHHHH
Confidence            8888888888888876543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=80.65  E-value=62  Score=32.00  Aligned_cols=75  Identities=11%  Similarity=0.052  Sum_probs=55.9

Q ss_pred             HHHHhhhhhchhhHHHHHHHhhcC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 012519          196 RAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (461)
Q Consensus       196 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  270 (461)
                      -+..|+.........-..+.+.+| ++++...+|-++...++-.++-..+++.+.+.+||+..-.+.-++.++..+
T Consensus       289 vi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~  364 (491)
T PF03219_consen  289 VIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGL  364 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Confidence            344566666666777777888886 456788888888888877777778889999999999988886655554443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	461
1pw4_A	451	Crystal Structure Of The Glycerol-3-Phosphate Trans		1e-04

>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 24/254 (9%)
Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATF 179
           +P  +  G+SR   G   S     Y  S    G++ D    ++ +  G+ L +   L   
Sbjct: 51  MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 110
Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA 239
             PWA  +S+  +  +  + G  +G+  P     +  W+ Q ER   V++       G  
Sbjct: 111 FVPWAT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169
Query: 240 IGLVLSPILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--PQISKYELE 292
           I  +L  + M+      A ++ P         L  L   +    TP     P I +Y+ +
Sbjct: 170 IPPLLFLLGMAWFNDWHAALYMP----AFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 225
Query: 293 Y--ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           Y     EK +  L   +     V+P   +LL     W I +AN       + IL W P Y
Sbjct: 226 YPDDYNEKAEQELTAKQIFMQYVLP--NKLL-----WYIAIANVFVYLLRYGILDWSPTY 278
Query: 351 FNFVYHIDLRQASW 364
              V H  L ++SW
Sbjct: 279 LKEVKHFALDKSSW 292

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-54
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	5e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  186 bits (473), Expect = 5e-54
 Identities = 60/345 (17%), Positives = 118/345 (34%), Gaps = 23/345 (6%)

Query: 97  RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           R ++   +    A     R   ++A+ P  +  G+SR   G   S     Y  S    G+
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           + D    ++ +  G+ L +       +   A +S+  +  +  + G  +G+  P     +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-----GIFGPFVIFGLSGFLWV 269
             W+ Q ER   V++    +   + +G  + P+L                +      L  
Sbjct: 145 VHWWSQKERGGIVSV----WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 200

Query: 270 LVWLSATSSTPD--RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW 327
           L   +    TP     P I +Y+ +Y     +K      + +        + +L     W
Sbjct: 201 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA-----EQELTAKQIFMQYVLPNKLLW 255

Query: 328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML 387
            I +AN       + IL W P Y   V H  L ++SW   +          L G +SD +
Sbjct: 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315

Query: 388 IQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA 432
            +     T    +      +     +  +  A +P +    + + 
Sbjct: 316 FRGNRGATGVFFMT----LVTIATIVYWMNPAGNPTVDMICMIVI 356

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 37/295 (12%), Positives = 88/295 (29%), Gaps = 36/295 (12%)

Query: 141 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 200
            ++L  Y VS +  G + D  G + ++  G++++ LAT +      +SL  L+A  A+ G
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQG 99

Query: 201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---IFGP 257
           +  GV       +    + +T+   A ++   G      +  ++  +L +       +  
Sbjct: 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159

Query: 258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF 317
            ++        +  W+  T        ++        L                     +
Sbjct: 160 LLVLCAGVTFSMARWMPETRPVDAPRTRL--------LTS-------------------Y 192

Query: 318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTG 377
           + L         ++       G     +   +    V  +     S    +P        
Sbjct: 193 KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAF--- 249

Query: 378 YLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA 432
             G   +    +R +++     I   +  +   I           ++  A L   
Sbjct: 250 -FGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFF 303

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 33/255 (12%), Positives = 64/255 (25%), Gaps = 93/255 (36%)

Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW-------FPQTERARAVAIAMG 232
           L      T+   L ++     +AE     ++ + +A W         +       ++   
Sbjct: 318 LPREVLTTNPRRL-SI-----IAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLN-- 364

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIF--------GLSGFLW---------VLVWLSA 275
                     VL P    +  +F    +F         L   +W         V+V    
Sbjct: 365 ----------VLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 276 TSSTPDRHPQISKYELEYI-LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
             S  ++ P+ S   +  I L  K K       H         R ++         +   
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH---------RSIVDHYN-----IPKT 458

Query: 335 MHSWGFFVILSWMPIYFNFVYHI-----------------DLRQASWFSA------VPWS 371
             S            Y +  +H+                 D R   +           W+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWN 515

Query: 372 VMAFTGYLGGLLSDM 386
               +G +   L  +
Sbjct: 516 A---SGSILNTLQQL 527

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 29/329 (8%)

Query: 119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT 178
            + +     A   +   +G++QS+F +GY + PI  G L+     K  +  G+ L++L  
Sbjct: 46  DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105

Query: 179 FL-TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG 237
            L  P A   +    L    ++    G    A N  V    P++     + +    F   
Sbjct: 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNL-AQTF--- 161

Query: 238 NAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKY-------- 289
           N+ G +++ +      I              +     +           + Y        
Sbjct: 162 NSFGAIIAVVFGQSL-ILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVL 220

Query: 290 ---ELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSW 346
               L  + +         +  K  +      RL         ++A   +        S+
Sbjct: 221 LVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSY 280

Query: 347 MPIYFN-FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 405
           +  Y    +  +    A+ +            + G  L               K+L +  
Sbjct: 281 LIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP--------HKVLAAYA 332

Query: 406 FIAPGIALIGLTAAKSPVMASAWLTLAIG 434
            IA  + LI      +             
Sbjct: 333 LIAMALCLISAF---AGGHVGLIALTLCS 358

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	461
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.98
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.98
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.95
2xut_A	524	Proton/peptide symporter family protein; transport	99.93
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.7
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.6
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.59
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.41
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.39
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.25
2xut_A	524	Proton/peptide symporter family protein; transport	99.02

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=4.1e-37  Score=299.13  Aligned_cols=352  Identities=18%  Similarity=0.187  Sum_probs=278.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      .++.++..+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            3455677888888899999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc----cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519          173 LWSLATFLTPW----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (461)
Q Consensus       173 ~~~i~~~~~~~----~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  248 (461)
                      +.+++.+++++    +  ++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+
T Consensus       101 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    8  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcC-chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChh--HHHHhcchh
Q 012519          249 MSQAG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP--FRRLLSKMP  325 (461)
Q Consensus       249 ~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  325 (461)
                      .+..| ||+.|++.+++.++..++.++..||+|++.+..+.++.++..+.   .  .+...+++....+  .++.+++|.
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~  253 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD---D--YNEKAEQELTAKQIFMQYVLPNKL  253 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------CCTHHHHHHTSSCHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc---c--chhhhhcccccccchHHHHHcCHH
Confidence            99998 99999999999888777777777877655432211110000000   0  0000111111122  467889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhH--hhcCcchhhhHHHHHH
Q 012519          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML--IQRGTSVTLTRKILQS  403 (461)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--~~~~~~~~~~~~~~~~  403 (461)
                      ++...+..++..+..+....++|.|+++.+|++..+++++.+...++.+++.++.|++.||+  ++|        +.+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~  325 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--------GATGV  325 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhHHH
Confidence            99999999999999999999999999998899999999999999999999999999999998  766        23333


Q ss_pred             HhhHHHHHHHHHHhccC--hhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          404 IGFIAPGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       404 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      ...+...++++.+...+  +.+......++.+.+.+...+....+..+..|+ ++|++.|
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  385 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG  385 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence            33333324444444432  333334444444444555556667788888875 5887765

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.6e-36  Score=293.72  Aligned_cols=330  Identities=15%  Similarity=0.108  Sum_probs=269.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH
Q 012519           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (461)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  176 (461)
                      ++..+..+++..++.+++.....+..|.+.+++|.+..+.|++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~  103 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence            45566677778888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh---hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhc
Q 012519          177 ATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQA  252 (461)
Q Consensus       177 ~~~~~---~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~  252 (461)
                      +.+++   +++  ++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus       104 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          104 GAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999   888  999999999999999999999999999999999999999999999999999999999999998 555


Q ss_pred             C-------------------------chhHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCcchhHHHHHHHhhcCccccCC
Q 012519          253 G-------------------------IFGPFVIFGLSGFLWVLVWLSA-TSSTPDRHPQISKYELEYILREKQKPLLMGN  306 (461)
Q Consensus       253 g-------------------------wr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (461)
                      +                         ||+.|++.+++.++..++.++. .||++++.+                     +
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------------------~  240 (438)
T 3o7q_A          182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------------------S  240 (438)
T ss_dssp             CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC---------------------C
T ss_pred             ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---------------------c
Confidence            4                         9999988887777665554443 233222110                     1


Q ss_pred             CCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHH-HHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhh
Q 012519          307 KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY-FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (461)
                      +++++....++++++++|.++...+..++..........++|.| +++.+|++..+++.......++.+++.++.|++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  320 (438)
T 3o7q_A          241 DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS  320 (438)
T ss_dssp             CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11222334567889999999999999999999999999999999 88888999999999999999999999999999999


Q ss_pred             hHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccccccccc
Q 012519          386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLH  459 (461)
Q Consensus       386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~  459 (461)
                      |+++|         ..+..+.++.+++++.....++....+. +++.+++.+...+....+..+..|++++.+.
T Consensus       321 r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (438)
T 3o7q_A          321 RFAPH---------KVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQDTKYGS  384 (438)
T ss_dssp             HSCHH---------HHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGGHHHHH
T ss_pred             Hhcch---------HHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccccchh
Confidence            99988         2333444455555555555555544333 3444455566667777777777776655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=6.2e-35  Score=276.72  Aligned_cols=324  Identities=14%  Similarity=0.103  Sum_probs=265.0

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh
Q 012519          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (461)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  181 (461)
                      .++++..++..++...+.+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            45667777888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (461)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  261 (461)
                      +++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.++.|||+.|++.
T Consensus        83 ~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            999  999999999999999999999999999999999999999999999999999999999999999988999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (461)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (461)
                      +++.++..+...+..||+++++++                        +++...++++.+|+|+++...+..++......
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAP------------------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIA  216 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCC------------------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcccCCCCcc------------------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence            888877666555555665433211                        01122344578889999999999999999999


Q ss_pred             HHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhh-HHHHHHHHHHhc--
Q 012519          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTA--  418 (461)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--  418 (461)
                      ....+.|.|+++.+|+++.+.+.+.....++.+++.++.+++.||.+++         ....... ...+..++....  
T Consensus       217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~  287 (375)
T 2gfp_A          217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFG  287 (375)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999998899999999999999999999999999999998864         1111111 111111111111  


Q ss_pred             cChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (461)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g  460 (461)
                      .++.+......++.+.+.+...+....+..|..|+++|++.|
T Consensus       288 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g  329 (375)
T 2gfp_A          288 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGA  329 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHH
Confidence            123333444445555666777788888889988988887765

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.98  E-value=3.8e-30  Score=252.80  Aligned_cols=326  Identities=15%  Similarity=0.143  Sum_probs=229.9

Q ss_pred             cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchh
Q 012519          129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL  207 (461)
Q Consensus       129 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  207 (461)
                      +|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++  ++++.++++|+++|++.+...
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999 899999999999999999999999  999999999999999999999


Q ss_pred             hHHHHHHHhhcCchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCC--
Q 012519          208 PAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--  283 (461)
Q Consensus       208 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~--  283 (461)
                      +...++++|++|+++  |+.++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+..++..++..++.  
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL  206 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            999999999999988  8888999999999999999999999999999999999988777766655554433222111  


Q ss_pred             ---CCcchhHHHHHHHh----------------hcCccccCCC-----------------CCCCCCChhHHHHhcchhhH
Q 012519          284 ---PQISKYELEYILRE----------------KQKPLLMGNK-----------------HKPATVIPPFRRLLSKMPTW  327 (461)
Q Consensus       284 ---~~~~~~~~~~~~~~----------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  327 (461)
                         ....+++.++..+.                ..+....+..                 ...+.......+..+....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (491)
T 4aps_A          207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI  286 (491)
T ss_dssp             CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence               11112222211111                0000000000                 00000000001111223345


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhH
Q 012519          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (461)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (461)
                      ...+..++....+.....++|.|.++..+.+....+.......++.+++.++.+++.||++||+...    ...+..+.+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~~  362 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGLM  362 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHHH
Confidence            5555666666666777788899999888888788899999999999999999999999999884321    122233444


Q ss_pred             HHHHHHHHHhcc---------ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          408 APGIALIGLTAA---------KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       408 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      +.+++++.....         .+.+......++.+.+.+...+....+..+..|+ .||++.|
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g  425 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMS  425 (491)
T ss_dssp             HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHH
Confidence            444443333221         1334444444555555666667778888898885 5888876

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.98  E-value=2.9e-31  Score=260.71  Aligned_cols=354  Identities=16%  Similarity=0.139  Sum_probs=238.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCC--------CchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchH
Q 012519           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGW--------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI  165 (461)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~  165 (461)
                      +++.+.+.++.+++.++.++|...++.++|.+.++++.        +..+.|++.+++.+|.+++++++|+++||+|||+
T Consensus         7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~   86 (491)
T 4gc0_A            7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            34556666777888999999999999999999887743        3456789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc------------------cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHH
Q 012519          166 IMAWGVALWSLATFLTPW------------------AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAV  227 (461)
Q Consensus       166 ~~~~~~~~~~i~~~~~~~------------------~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~  227 (461)
                      +++++.+++.++.+++++                  +  +|+++++++|+++|+|.|...+....+++|+.|+++|++..
T Consensus        87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~  164 (491)
T 4gc0_A           87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV  164 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence            999999999999999884                  5  89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--------cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CcchhHHHHHHHhh
Q 012519          228 AIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREK  298 (461)
Q Consensus       228 ~~~~~~~~~G~~~g~~~~~~l~~~--------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  298 (461)
                      ++.+.+..+|.++++.++..+...        .+||+.+.+..+..++.. +..+..||+|+... +.+.++.++..++.
T Consensus       165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~  243 (491)
T 4gc0_A          165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKI  243 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence            999999999999999988877653        236766666665555543 44556688875321 11112211111110


Q ss_pred             cCc-c------ccCCCCCCCCCChhHHHHhcchhhHHHHHHH-HHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhH
Q 012519          299 QKP-L------LMGNKHKPATVIPPFRRLLSKMPTWSIIVAN-AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW  370 (461)
Q Consensus       299 ~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~  370 (461)
                      ... .      ...+..............++.++........ +......+.+..|.|.+.+. .+.+.........+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  322 (491)
T 4gc0_A          244 MGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVG  322 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHH
Confidence            000 0      0000000000001112333344444433333 33344455566667766665 4777777777777888


Q ss_pred             HHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHH--h--ccChhHHHHHHHHHHHHHHhhh-hhchhH
Q 012519          371 SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL--T--AAKSPVMASAWLTLAIGMKSFS-HSGFLV  445 (461)
Q Consensus       371 ~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  445 (461)
                      +..+++.++++++.||+|||       +..  ..+....+++++.+  .  ........+...++...+.... .+..+.
T Consensus       323 ~~~~~~~~~~~~l~dr~Grr-------~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (491)
T 4gc0_A          323 VINLTFTVLAIMTVDKFGRK-------PLQ--IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV  393 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCSH-------HHH--HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCc-------chh--ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            88999999999999999998       222  22222222222221  1  1222233333333333333333 356678


Q ss_pred             hhhhhccc-ccccccC
Q 012519          446 NLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       446 ~~~~~~p~-~~g~~~g  460 (461)
                      +..|++|. .|+++.|
T Consensus       394 ~~~E~fPt~~R~~~~g  409 (491)
T 4gc0_A          394 LLSEIFPNAIRGKALA  409 (491)
T ss_dssp             HHHHSSCTTTHHHHHH
T ss_pred             HHHHhCCHhHHHHHHH
Confidence            89999995 5887765

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.95  E-value=4.1e-27  Score=225.96  Aligned_cols=317  Identities=14%  Similarity=0.073  Sum_probs=203.5

Q ss_pred             hhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHH---HHhhccccccHH-
Q 012519          116 VVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---FLTPWAADTSLL-  190 (461)
Q Consensus       116 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~~~~-  190 (461)
                      ....+.+|. +.+++|.+..+.|++.+.+.++..++++++|+++||+|||++++++..+.+++.   ....+.  +... 
T Consensus        24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~  101 (417)
T 2cfq_A           24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQY  101 (417)
T ss_dssp             HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            344455555 556799999999999999999999999999999999999999999888775532   222222  2211 


Q ss_pred             HHHHHHHHHhhhhhchhhHHHHHHHhhcCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 012519          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (461)
Q Consensus       191 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  268 (461)
                      .++..+++.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++.
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~  180 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALIL  180 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence            234456666665554444444444444432  456778888888899999999999999987 58999999877765444


Q ss_pred             HHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHH
Q 012519          269 VLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMP  348 (461)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (461)
                      .+..++..||+++..+.   ++             .++.++++....++++++++|+++...+..++....+.....++|
T Consensus       181 ~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (417)
T 2cfq_A          181 AVLLFFAKTDAPSSATV---AN-------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFA  244 (417)
T ss_dssp             HHHSCSSCCCCSCSSCS---SS-------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCccccccccc---cc-------------ccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            44333333333221100   00             000011112234566888999998877766666666666677889


Q ss_pred             HHHHHhhCC---CccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHH
Q 012519          349 IYFNFVYHI---DLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA  425 (461)
Q Consensus       349 ~~~~~~~g~---s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (461)
                      .|+.+.++.   +....++...+..++.+++.++.|+++||+++|       +  .+..+.++.++.++.....++.+..
T Consensus       245 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-------~--~l~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T 2cfq_A          245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-------N--ALLLAGTIMSVRIIGSSFATSALEV  315 (417)
T ss_dssp             HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-------H--HHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-------H--HHHHHHHHHHHHHHHHHHhccHHHH
Confidence            888775442   233456677777788889999999999999988       2  2334444455555455444444433


Q ss_pred             HHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      ++..++.....+...+..+.+..|..|+ .||++.|
T Consensus       316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g  351 (417)
T 2cfq_A          316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYL  351 (417)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            3333333333444445557788888874 4776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.93  E-value=9.2e-25  Score=216.20  Aligned_cols=167  Identities=17%  Similarity=0.178  Sum_probs=144.5

Q ss_pred             HHHHHHHHHhhhHhhh-hhhhhhcC------CCchhHHHHHHHHHHHHHHhHhhhhhhhhhh-cchHHHHHHHHHHHHHH
Q 012519          107 ALALCNADRVVMSVAI-VPLSLAHG------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLAT  178 (461)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~i~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~  178 (461)
                      ..++..+........+ +.+.+++|      .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.
T Consensus        20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~   99 (524)
T 2xut_A           20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH   99 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3333333333343444 45677889      9999999999999999999999999999999 99999999999999999


Q ss_pred             HHhhccccc-cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519          179 FLTPWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI---AMGGFTSGNAIGLVLSPILMSQAGI  254 (461)
Q Consensus       179 ~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~gw  254 (461)
                      ++++++  + +++.++++|++.|++.+...+...+++.|++|+++|+++.+.   ...+.++|..+||.+++.+.+..||
T Consensus       100 ~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (524)
T 2xut_A          100 AFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA  177 (524)
T ss_dssp             HHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred             HHHHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            999999  8 999999999999999999999999999999999999876666   9999999999999999999998999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 012519          255 FGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~  275 (461)
                      |+.|++.+++.++..+..++.
T Consensus       178 ~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          178 AVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999888877665555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.70  E-value=6.5e-16  Score=149.51  Aligned_cols=171  Identities=11%  Similarity=-0.024  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHhhhHhhhhhhhhh-cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh--cchHHHHHHHHHHH-HHHHH
Q 012519          105 ALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAWGVALWS-LATFL  180 (461)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~~  180 (461)
                      .+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+.++..+.. ++.++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (451)
T 1pw4_A          258 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV  337 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            333444444444555666666665 899999999999999999999999999999999  99999888887776 77777


Q ss_pred             hhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhHHH
Q 012519          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFV  259 (461)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~gwr~~f~  259 (461)
                      ..+....+.+.+++..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||+..|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  417 (451)
T 1pw4_A          338 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM  417 (451)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred             HHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            76663347888888889999999988999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 012519          260 IFGLSGFLWVLVWLSA  275 (461)
Q Consensus       260 ~~~~~~~~~~~~~~~~  275 (461)
                      +.+++.++..++.++.
T Consensus       418 ~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          418 VMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888888776665554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.60  E-value=2.3e-14  Score=137.07  Aligned_cols=146  Identities=14%  Similarity=0.093  Sum_probs=126.6

Q ss_pred             chhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHH
Q 012519          133 RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN  212 (461)
Q Consensus       133 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  212 (461)
                      ....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.  ++.+.+++..++.+++.+...+....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566888888888999999999999999999999999999988888888887  88888888888888887777777889


Q ss_pred             HHHhhcCchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519          213 MVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (461)
Q Consensus       213 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (461)
                      ++.|.+|++.|+.+.++ ++....+|..++|.+++.+.++.|++..|.+.+++.++..++.++..+|++
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999999999999 488889999999999999999889999999988888877776666555543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.59  E-value=7.9e-14  Score=134.29  Aligned_cols=150  Identities=11%  Similarity=0.123  Sum_probs=125.9

Q ss_pred             hhhHhhhhhh-h-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHH
Q 012519          116 VVMSVAIVPL-S-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALL  193 (461)
Q Consensus       116 ~~~~~~~~~i-~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~  193 (461)
                      .......|.+ . +.+|.+..+.+++.+...++..++.++.|+++||+|||+++.++.++..++.++..+.  ++.+.++
T Consensus       275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  352 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGLI  352 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CCcHHHH
Confidence            3444444544 4 4459999999999999999999999999999999999999999999999999888888  7776655


Q ss_pred             HHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHH
Q 012519          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVL  270 (461)
Q Consensus       194 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~  270 (461)
                      .. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++..+
T Consensus       353 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          353 AL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            44 8889999999999999999999855 888888877 566999999999999999999 99999987655544333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.41  E-value=5.1e-13  Score=130.67  Aligned_cols=162  Identities=16%  Similarity=0.073  Sum_probs=126.5

Q ss_pred             hhHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHH-----HHHHHHHHHHHHhhcc------
Q 012519          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA-----WGVALWSLATFLTPWA------  184 (461)
Q Consensus       117 ~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~------  184 (461)
                      .....++.+. +.++.+..+.+++.+...++..++.++.|++.||+|||+...     ++.++.+++.++.++.      
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4aps_A          301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT  380 (491)
T ss_dssp             GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred             hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3334444443 446766678888899999999999999999999999986554     7777777777766653      


Q ss_pred             -ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 012519          185 -ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (461)
Q Consensus       185 -~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  263 (461)
                       ...+.+.+++.-++.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+ .++.+.|++.++
T Consensus       381 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~  459 (491)
T 4aps_A          381 SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGL  459 (491)
T ss_dssp             CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence             113778888889999999999999999999999999999999999999999999999999887765 467788888888


Q ss_pred             HHHHHHHHHHHhcCCC
Q 012519          264 SGFLWVLVWLSATSST  279 (461)
Q Consensus       264 ~~~~~~~~~~~~~~~~  279 (461)
                      +.++..++.++..++.
T Consensus       460 ~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          460 GSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             HHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8877777666665443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.39  E-value=1.3e-11  Score=120.57  Aligned_cols=178  Identities=17%  Similarity=0.070  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc
Q 012519          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  183 (461)
                      .....+........+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~  361 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  361 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence            33333434444445555667788888888888888888888999999999999999999999999988888877766543


Q ss_pred             c--ccccHHHHHHHH--HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------hcC
Q 012519          184 A--ADTSLLALLAMR--AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------QAG  253 (461)
Q Consensus       184 ~--~~~~~~~l~~~r--~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~g  253 (461)
                      .  ...+.+..++.-  +..+++. ...+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+      ..+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~  440 (491)
T 4gc0_A          362 AFYTQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH  440 (491)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred             HHhcccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3  112222222222  2223332 3457778999999999999999999999999999999888766533      456


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012519          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDR  282 (461)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~  282 (461)
                      +.+.|++.++++++..++.+++.||+..+
T Consensus       441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          441 NGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             hhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            77889999999999888888888887543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.25  E-value=8.2e-12  Score=117.53  Aligned_cols=154  Identities=17%  Similarity=0.053  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHhhhHhhhhhhhhh-cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH-HHHHHHH--h
Q 012519          106 LALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL-WSLATFL--T  181 (461)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~~--~  181 (461)
                      +..++............|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|++  +..+..+ ..++..+  .
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~  283 (375)
T 2gfp_A          206 LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIP  283 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            33334444444555666766555 899999999999999999999999999999999883  2333332 2222221  1


Q ss_pred             hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (461)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  261 (461)
                      .....++.+.+++..++.|++.+...+...+++.|.+| ++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.
T Consensus       284 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          284 DWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             hhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            22111477778888899999999999999999999997 89999999999999999999999999998887888777764


Q ss_pred             H
Q 012519          262 G  262 (461)
Q Consensus       262 ~  262 (461)
                      +
T Consensus       363 ~  363 (375)
T 2gfp_A          363 L  363 (375)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.02  E-value=4.7e-10  Score=110.55  Aligned_cols=144  Identities=13%  Similarity=0.024  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhh----hhhcc----hHHHHHHHHHHHHHHHHhhccc-------cccHHHHHHHHHHH
Q 012519          135 FSGIVQSSFLWGYLVSPIAGGTLV----DYYGG----KIIMAWGVALWSLATFLTPWAA-------DTSLLALLAMRAVV  199 (461)
Q Consensus       135 ~~~~~~s~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~i~~~~~~~~~-------~~~~~~l~~~r~l~  199 (461)
                      ..+++.+...++..++.++.+++.    ||.|+    ++.+.++.++.+++.++.++..       ..+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            466777777777777788877775    55543    3567788888888888776641       14778888889999


Q ss_pred             hhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--Cc---------hhHHHHHHHHHHHH
Q 012519          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GI---------FGPFVIFGLSGFLW  268 (461)
Q Consensus       200 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--gw---------r~~f~~~~~~~~~~  268 (461)
                      |++.+...+...+++.|.+|+++||+++|+.+....+|..+||.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887632  23         33477777777766


Q ss_pred             HHHHHHhcCC
Q 012519          269 VLVWLSATSS  278 (461)
Q Consensus       269 ~~~~~~~~~~  278 (461)
                      .++.++..++
T Consensus       496 ~~~~~~~~~~  505 (524)
T 2xut_A          496 AIVFALYARS  505 (524)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHHHHH
Confidence            6665555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	461
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-18
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	7e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.002

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 85.9 bits (211), Expect = 1e-18
 Identities = 62/360 (17%), Positives = 124/360 (34%), Gaps = 9/360 (2%)

Query: 97  RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           R ++   +    A     R   ++A+ P  +  G+SR   G   S     Y  S    G+
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPW--AADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           + D    ++ +  G+ L +       +   A +S+  +  +  + G  +G+  P     +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS 274
             W+ Q ER   V++       G  I  +L  + M+    +   +      F  +LV L 
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP--AFCAILVALF 199

Query: 275 ATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
           A +   D         +E    +         + +        + +L     W I +AN 
Sbjct: 200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 259

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV 394
                 + IL W P Y   V H  L ++SW   +          L G +SD + +     
Sbjct: 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319

Query: 395 TLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQY 454
           T     +  +  +     +  +  A +P +    + +   +         ++  E+AP+ 
Sbjct: 320 T----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 34/314 (10%), Positives = 81/314 (25%), Gaps = 4/314 (1%)

Query: 116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS 175
                  + L   +  S+S +GI+ ++     L+     G L D  G +  + W +    
Sbjct: 25  AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84

Query: 176 LATFL----TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM 231
           +                 + + ++   + L       A                    A 
Sbjct: 85  VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144

Query: 232 GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL 291
                G A+G  +  I+ +    F  ++  G +  L VL++ + T +        +    
Sbjct: 145 MFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN 204

Query: 292 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF 351
                 K    L          +       +               +      + +  Y 
Sbjct: 205 HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYV 264

Query: 352 NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI 411
             +  +      +F+ +  + +     L    + M ++   S   T  +   I       
Sbjct: 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF 324

Query: 412 ALIGLTAAKSPVMA 425
            +  L       + 
Sbjct: 325 EVPFLLVGCFKYIT 338

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 24/221 (10%), Positives = 60/221 (27%), Gaps = 3/221 (1%)

Query: 54  VGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNA 113
           +    +   +     S+   +   A +   +L      F   +   +   +       + 
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238

Query: 114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL 173
                +                 G V +               +++  GGK  +     +
Sbjct: 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298

Query: 174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG- 232
            S+    + +A  TS L ++ ++ +        L      +   F     A    +    
Sbjct: 299 MSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL 273
                     VL+  +    G  G +++ GL    + L+ +
Sbjct: 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	461
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.69
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.6

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-36  Score=293.43  Aligned_cols=358  Identities=18%  Similarity=0.183  Sum_probs=275.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (461)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  172 (461)
                      .++.+|.++..++++++..+++...++.+.|.+. |+|+|.+|+|++.+++.++++++++++|+++||+|||+++.++.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            3456788888889999999999989998888876 589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc--cccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012519          173 LWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (461)
Q Consensus       173 ~~~i~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~  250 (461)
                      +.+++.++++++.  .++++.++++|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999999887761  14788999999999999999999999999999999999999999999999999999999988777


Q ss_pred             hc-CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHH
Q 012519          251 QA-GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSI  329 (461)
Q Consensus       251 ~~-gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (461)
                      .. +||+.|++.+++.++..++.++..+++|++.+....++.+....+..   ....+++........+..++++.++..
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDY---NEKAEQELTAKQIFMQYVLPNKLLWYI  254 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CCTHHHHHHTSSCHHHHHH
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccch---hhccccccchhhHHHHHHHcCchHHHH
Confidence            54 79999999999998888888888888776554332222111000000   001111222233456678889999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHH
Q 012519          330 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP  409 (461)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  409 (461)
                      ....++.....+....+.|.|+++.++++..+.+.......++.+++.++.|++.||.++++.      ...........
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~  328 (447)
T d1pw4a_         255 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR------GATGVFFMTLV  328 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH------HHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccc------ccccchhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988731      12222222222


Q ss_pred             HHHHHHHhc--cChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          410 GIALIGLTA--AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       410 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      .........  ..+.+......++.++..+...+....+..|..|+ .+|++.|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g  382 (447)
T d1pw4a_         329 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG  382 (447)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            222222222  23344444444444444555556677788888875 5787765

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.2e-23  Score=196.63  Aligned_cols=329  Identities=13%  Similarity=0.019  Sum_probs=225.1

Q ss_pred             HHHHHHHHHHHHhhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhh
Q 012519          104 LALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (461)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  182 (461)
                      +.+..++..+......+.+|. +.+++|.|.+++|++.+++.++..++++++|+++||+|||++++++..+..++..+..
T Consensus        12 l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   91 (417)
T d1pv7a_          12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            344445555555566777776 6677999999999999999999999999999999999999999999999999888887


Q ss_pred             ccccccHHH----HHHHHHHHhhhhhchhhHHHHHHHhhcCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 012519          183 WAADTSLLA----LLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (461)
Q Consensus       183 ~~~~~~~~~----l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~  256 (461)
                      +.  .+...    .++.+.+.+.+.+...........+..++  +++....+........+..+++.+++.+.+. +|+.
T Consensus        92 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  168 (417)
T d1pv7a_          92 IF--IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQF  168 (417)
T ss_dssp             HH--THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHH
T ss_pred             Hh--hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccc
Confidence            76  55443    34556666666555555544444444332  3456677888888999999999999988765 6666


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHH
Q 012519          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (461)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (461)
                      .+........+..++.++..++.++..+..++++                ...++.......+.++++..+.........
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (417)
T d1pv7a_         169 VFWLGSGCALILAVLLFFAKTDAPSSATVANAVG----------------ANHSAFSLKLALELFRQPKLWFLSLYVIGV  232 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH----------------SCCCCCCHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHhcccccchhhhhhhh----------------hhcccccccccccccccccccchhhhhHHH
Confidence            6766666666666666666666655443222111                112222233444556666655555555554


Q ss_pred             HHHHHHHHHhHHHHHHHh---hCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHH
Q 012519          337 SWGFFVILSWMPIYFNFV---YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (461)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (461)
                      ...........+.+....   .+.+....+.......++..++..+.+++.||.+++         ..+..+.++.++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~  303 (417)
T d1pv7a_         233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRI  303 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc---------cchhhhHHHHHHhh
Confidence            444444444444443322   233444566677777788889999999999999987         34455566666666


Q ss_pred             HHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519          414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG  460 (461)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g  460 (461)
                      +.....++.+..+...++.+...+...+....+.++..|+ .+|++.|
T Consensus       304 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (417)
T d1pv7a_         304 IGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYL  351 (417)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHH
T ss_pred             hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHH
Confidence            6677777777777777777777777888888888998874 5777654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.6e-16  Score=147.41  Aligned_cols=158  Identities=13%  Similarity=0.076  Sum_probs=140.1

Q ss_pred             hhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Q 012519          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (461)
Q Consensus       120 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~  199 (461)
                      .......++.+.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.  ++.+.+++..++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~  322 (417)
T d1pv7a_         245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLH  322 (417)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc--cccchhhHHHHHH
Confidence            33444445555677788889999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             hhhhhchhhHHHHHHHhhcCchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCC
Q 012519          200 GLAEGVALPAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSS  278 (461)
Q Consensus       200 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  278 (461)
                      |++.+...+...+++.|.+|+++|+++.++. +....+|..++|.++|++.+++||+..|++.+++.++..++.++..++
T Consensus       323 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         323 MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999986 566789999999999999999999999999999888877777776654


Q ss_pred             C
Q 012519          279 T  279 (461)
Q Consensus       279 ~  279 (461)
                      +
T Consensus       403 ~  403 (417)
T d1pv7a_         403 P  403 (417)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.8e-14  Score=135.37  Aligned_cols=154  Identities=12%  Similarity=-0.029  Sum_probs=123.4

Q ss_pred             hhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHH---HHHHHHHHHHHhhccccccHHHHHHHHHH
Q 012519          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW---GVALWSLATFLTPWAADTSLLALLAMRAV  198 (461)
Q Consensus       122 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~~~l~~~r~l  198 (461)
                      ...+.+.++.+..+.++..+...++..++.++.|++.||++||+....   ...+..++.++.......+.+..+++-++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (447)
T d1pw4a_         273 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV  352 (447)
T ss_dssp             HHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred             hhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            344566789999999999999999999999999999999998753332   23333333333333333678888888899


Q ss_pred             HhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 012519          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (461)
Q Consensus       199 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (461)
                      .|++.+...+....++.|.+|+++|+++.|+.+....+ |.+++|.+.+.+.++.||+..|++.++..++..++.+++
T Consensus       353 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         353 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888899999999999999999999999887776 567789999999999999999998888777766655554