Citrus Sinensis ID: 012526

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
MLFSLPILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEccccccccccEEEccHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccccEEEEEEcccccccccccccEEEEccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEcccHHHHHcccccccccHHHHHHHHccccccEEEEEEcccccEEEEEEccHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHHHHHccccccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEccHHHHHHcccccccccccHccEEEEEEEcccccccccEEEcHHHHHHHHHHHcHHcccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEEcHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHccEEEEEccccccccEEEEccccccccccccccccccEEEEEccccccccccccccEEEEEcccHcccccccHHHHHHHHccccccccccccEEccccccccccccccEEEEEcccccEEEEcccccccccHHHHHHHccccHcEEEEEcccccEEEEEEEccHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHcccccHHcccEEEEccccEcccccEEc
Coil and Loop (DISEMBL)
mlfslpiltpviagkhykyetigsddiatyvytsgttgnpkgvMLTHKNLLHQIRSLydivpaengdkflsmlppwhvyeRACGYFIFSRGIELMYTAVRNLKDDlqryqphymisvPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFcltrnqkqpSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIgiskagvsgggslpmHIDLFYEAIGVKVQVgygltesspviaarrptcnvlgsvghpinhteikivdaetnevlpagskgivkvrgsqvmqgyfknpsatkqaldedgwlntgdigwiaphhsrgrsrrcggvlvlegrakdtivlstgenveplELEEAALRSSLIRQIVVIgqdqrrpgaiivpdKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKwtskcsfqigpihvvdepftVNFLCLAL
Flexible Loop (DISEMBL)
mlfslpilTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGwiaphhsrgrsrrCGGVLVLegrakdtivlstgenveplELEEAALRSSLIRQIvvigqdqrrpgaiivpDKEEVLMAAKRLSIvhadaselskekTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Low Complexity Region (SEG)
MLFSLPILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSaarrvvaraliriSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHsrgrsrrcggVLVLEGRAKDTIVLSTGENVEPleleeaalRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered region (IsUnstruct)
**FSLPILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA*
Disordered Region (DISOPRED)
MLFSLPILTP************GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQK******AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH**A*ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISEMBL)
MLFSLPILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISPRO)
MLFSLPILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFSLPILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	461	2.2.26 [Sep-21-2011]
Q9LK39	722	Probable acyl-activating	yes	no	0.952	0.608	0.718	0.0
Q8W471	727	Long-chain-fatty-acid--[a	no	no	0.934	0.592	0.691	0.0
P44446	607	Putative long-chain-fatty	yes	no	0.776	0.589	0.313	2e-42
B2HGV4	600	Long-chain-fatty-acid--Co	no	no	0.718	0.551	0.311	2e-40
Q7TYX8	600	Long-chain-fatty-acid--Co	no	no	0.709	0.545	0.310	2e-39
O53521	600	Long-chain-fatty-acid--Co	yes	no	0.709	0.545	0.307	2e-38
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.772	0.507	0.306	3e-37
P41216	699	Long-chain-fatty-acid--Co	yes	no	0.767	0.506	0.291	4e-37
P33121	698	Long-chain-fatty-acid--Co	yes	no	0.767	0.507	0.293	9e-37
Q9JID6	698	Long-chain-fatty-acid--Co	yes	no	0.765	0.505	0.292	3e-36

>sp|Q9LK39|AAE16_ARATH Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/440 (71%), Positives = 376/440 (85%), Gaps = 1/440 (0%)

Query: 17  YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPW 76
           Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP W
Sbjct: 255 YEYEYIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSW 314

Query: 77  HVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSS 136
           H YERAC YFIF+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS
Sbjct: 315 HAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASS 374

Query: 137 AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHL 196
            AR+ +A  LI++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+
Sbjct: 375 PARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHM 434

Query: 197 LAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP 256
           LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR 
Sbjct: 435 LAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRL 494

Query: 257 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 316
            CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+
Sbjct: 495 RCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDD 554

Query: 317 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 376
           DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+L
Sbjct: 555 DGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNL 614

Query: 377 IRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWT 435
           I+QIVVIGQDQRR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWT
Sbjct: 615 IQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWT 674

Query: 436 SKCSFQIGPIHVVDEPFTVN 455
           S+CSFQ+GP+ +VDEPFT++
Sbjct: 675 SQCSFQVGPVLIVDEPFTID 694

May be involved in the activation of fatty acids to acyl-carrier-protein.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q8W471|AAE15_ARATH Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Arabidopsis thaliana GN=AAE15 PE=1 SV=1

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/441 (69%), Positives = 365/441 (82%), Gaps = 10/441 (2%)

Query: 15  KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 74
           + Y+ + I SDD A  +YTSGTTGNPKGVMLTH+NLLHQI+ L   VPA+ GDKFLSMLP
Sbjct: 269 RSYRNQFIDSDDTAAIMYTSGTTGNPKGVMLTHRNLLHQIKHLSKYVPAQAGDKFLSMLP 328

Query: 75  PWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFT 134
            WH YERA  YFIF+ G+E MYT++R LKDDL+RYQP+Y++SVPLVYETLYSGIQKQI  
Sbjct: 329 SWHAYERASEYFIFTCGVEQMYTSIRYLKDDLKRYQPNYIVSVPLVYETLYSGIQKQISA 388

Query: 135 SSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPL 194
           SSA R+ +A  LI++S AY   KRIYEG CLT+ QK P Y+VA +DWLWAR+I A+LWPL
Sbjct: 389 SSAGRKFLALTLIKVSMAYMEMKRIYEGMCLTKEQKPPMYIVAFVDWLWARVIAALLWPL 448

Query: 195 HLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR 254
           H+LA+KL+YKKI S+IGISKAG+SGGGSLP+H+D F+EAIGV +Q GYGLTE+SPV+ AR
Sbjct: 449 HMLAKKLIYKKIHSSIGISKAGISGGGSLPIHVDKFFEAIGVILQNGYGLTETSPVVCAR 508

Query: 255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 314
             +CNVLGS GHP++ TE KIVD ETN VLP GSKGI+KVRG QVM+GY+KNPS TKQ L
Sbjct: 509 TLSCNVLGSAGHPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYYKNPSTTKQVL 568

Query: 315 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS 374
           +E GW NTGD GWIAPHHS+GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS
Sbjct: 569 NESGWFNTGDTGWIAPHHSKGRSRHCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRS 628

Query: 375 SLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 434
            +I QIVVIGQD+RR GAII+P+KEE    A+R+        E SKE   SL+Y ELRKW
Sbjct: 629 RVIEQIVVIGQDRRRLGAIIIPNKEE----AQRVD------PETSKETLKSLVYQELRKW 678

Query: 435 TSKCSFQIGPIHVVDEPFTVN 455
           TS+CSFQ+GP+ +VD+PFT++
Sbjct: 679 TSECSFQVGPVLIVDDPFTID 699

Probably involved in the activation of fatty acids to acyl-carrier-protein prior to fatty acid elongation in plastids. Acts on medium- to long-chain fatty acids.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P44446|LCFH_HAEIN Putative long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0002 PE=3 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 191/405 (47%), Gaps = 47/405 (11%)

Query: 26  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY 85
           D+ T +YTSGTTG PKGVML + NL HQ+ +    +   + D  LS LP  H++ERA   
Sbjct: 186 DLFTIIYTSGTTGEPKGVMLDYANLAHQLETHDLSLNVTDQDISLSFLPFSHIFERAWAA 245

Query: 86  FIFSRGIELMYTAVRN-LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVAR 144
           +I  RG  L Y    N ++  L   +P  M +VP  YE +Y+ +  ++  +   R+++  
Sbjct: 246 YILHRGAILCYLEDTNQVRSALTEIRPTLMCAVPRFYEKIYAAVLDKVQKAPKLRQIMFH 305

Query: 145 ALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYK 204
             I +   Y         F L  N K   +L               L     LA+KLV  
Sbjct: 306 WAISVGQKY---------FDLRANNKAIPFL---------------LKKQFALADKLVLS 341

Query: 205 KIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS 263
           K++  +G   K    GG  L   I LF+ AIG+ +++GYG+TE++  ++          S
Sbjct: 342 KLRQLLGGRIKMMPCGGAKLEPAIGLFFHAIGINIKLGYGMTETTATVSCWHDFQFNPNS 401

Query: 264 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 323
           +G  +   E+KI   E NE+L         VRG  VM+GY+K P  T QA  EDG+L TG
Sbjct: 402 IGTLMPKAEVKI--GENNEIL---------VRGGMVMKGYYKKPEETAQAFTEDGFLKTG 450

Query: 324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 383
           D G               G L +  R K+ +  S G+ + P  +E    +   I QI +I
Sbjct: 451 DAGEFDEQ----------GNLFITDRIKELMKTSNGKYIAPQYIESKIGKDKFIEQIAII 500

Query: 384 GQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLY 428
              ++   A+IVP  + +   AK+L+I + D  EL K   I  ++
Sbjct: 501 ADAKKYVSALIVPCFDSLEEYAKQLNIKYHDRLELLKNSDILKMF 545

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|B2HGV4|FAC15_MYCMM Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD15 PE=3 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 184/388 (47%), Gaps = 57/388 (14%)

Query: 18  KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPP 75
           + + + S D AT +YTSGTTG PKG  LTH NLLH+IR   + +P     G + L  LP 
Sbjct: 174 RLDALRSSDPATLIYTSGTTGRPKGCQLTHSNLLHEIRGTQECLPTLLTPGQRLLVFLPL 233

Query: 76  WHVYERACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFT 134
            HV  RA     F+  + + +T+ ++NL      ++P  ++SVP V+E +Y+  ++    
Sbjct: 234 AHVLARALTLSAFASKVTVGFTSDIKNLLPLFAVFKPTVVVSVPRVFEKVYNTAEQNASN 293

Query: 135 SS--AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
               A  ++ A+  +  S A+              +  +P  L               L 
Sbjct: 294 DGKGAIFKLAAQTAVDWSRAW--------------DDGRPGLL---------------LR 324

Query: 193 PLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI 251
             H L ++LVY K+++A+G    A VSGG  L   +  FY  +G+ +  GYGLTE+S  +
Sbjct: 325 AKHALFDRLVYHKLRAALGGDCHAAVSGGAPLGARLGHFYRGVGLTIYEGYGLTETSAAV 384

Query: 252 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 311
              +     +G+VG  +    ++I D            G + VRG  V  GY++N  AT 
Sbjct: 385 TVNQIDALKIGTVGKLVPGNSLRIAD-----------DGELLVRGGVVFSGYWRNEQATD 433

Query: 312 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 371
           +A   DGW  TGD+G I             G L + GR K+ IV + G+NV P  LE+  
Sbjct: 434 EAF-TDGWFRTGDLGAIDDD----------GFLSITGRKKELIVTAGGKNVAPAVLEDQL 482

Query: 372 LRSSLIRQIVVIGQDQRRPGAIIVPDKE 399
               LI Q +V+G  +   GA+I  D E
Sbjct: 483 RAHPLISQAMVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q7TYX8|FAC15_MYCBO Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadD15 PE=3 SV=2

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 181/380 (47%), Gaps = 53/380 (13%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYER 81
           S D AT +YTSGTTG PKG  LT  NL+H+I+      P     G++ L  LP  HV  R
Sbjct: 180 STDPATLIYTSGTTGRPKGCQLTQSNLVHEIKGARAYHPTLLRKGERLLVFLPLAHVLAR 239

Query: 82  ACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 140
           A     F   + + +T+ ++NL   L  ++P  ++SVP V+E +Y+  ++    +   R 
Sbjct: 240 AISMAAFHSKVTVGFTSDIKNLLPMLAVFKPTVVVSVPRVFEKVYNTAEQNAANAGKGRI 299

Query: 141 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 200
               A   + ++           C   ++  P  L               L   H + ++
Sbjct: 300 FAIAAQTAVDWSEA---------C---DRGGPGLL---------------LRAKHAVFDR 332

Query: 201 LVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN 259
           LVY+K+++A+G + +A VSGG  L   +  FY   G+ +  GYGL+E+S  +A  +    
Sbjct: 333 LVYRKLRAALGGNCRAAVSGGAPLGARLGHFYRGAGLTIYEGYGLSETSGGVAISQFNDL 392

Query: 260 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW 319
            +G+VG P+    ++I D            G + VRG  V  GY++N  AT +A   DGW
Sbjct: 393 KIGTVGKPVPGNSLRIAD-----------DGELLVRGGVVFSGYWRNEQATTEAF-TDGW 440

Query: 320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 379
             TGD+G +             G L + GR K+ IV + G+NV P  LE+      LI Q
Sbjct: 441 FKTGDLGAVDED----------GFLTITGRKKEIIVTAGGKNVAPAVLEDQLRAHPLISQ 490

Query: 380 IVVIGQDQRRPGAIIVPDKE 399
            VV+G  +   GA+I  D E
Sbjct: 491 AVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium bovis (taxid: 1765)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O53521|FAC15_MYCTU Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium tuberculosis GN=fadD15 PE=1 SV=3

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 180/380 (47%), Gaps = 53/380 (13%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYER 81
           S D AT +YTSGTTG PKG  LT  NL+H+I+      P     G++ L  LP  HV  R
Sbjct: 180 STDPATLIYTSGTTGRPKGCQLTQSNLVHEIKGARAYHPTLLRKGERLLVFLPLAHVLAR 239

Query: 82  ACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 140
           A     F   + + +T+ ++NL   L  ++P  ++SVP V+E +Y+  ++    +   R 
Sbjct: 240 AISMAAFHSKVTVGFTSDIKNLLPMLAVFKPTVVVSVPRVFEKVYNTAEQNAANAGKGRI 299

Query: 141 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 200
               A   + ++           C   ++  P  L               L   H + ++
Sbjct: 300 FAIAAQTAVDWSEA---------C---DRGGPGLL---------------LRAKHAVFDR 332

Query: 201 LVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN 259
           LVY+K+++A+G + +A VSGG  L   +  FY   G+ +  GYGL+ +S  +A  +    
Sbjct: 333 LVYRKLRAALGGNCRAAVSGGAPLGARLGHFYRGAGLTIYEGYGLSGTSGGVAISQFNDL 392

Query: 260 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW 319
            +G+VG P+    ++I D            G + VRG  V  GY++N  AT +A   DGW
Sbjct: 393 KIGTVGKPVPGNSLRIAD-----------DGELLVRGGVVFSGYWRNEQATTEAF-TDGW 440

Query: 320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 379
             TGD+G +             G L + GR K+ IV + G+NV P  LE+      LI Q
Sbjct: 441 FKTGDLGAVDED----------GFLTITGRKKEIIVTAGGKNVAPAVLEDQLRAHPLISQ 490

Query: 380 IVVIGQDQRRPGAIIVPDKE 399
            VV+G  +   GA+I  D E
Sbjct: 491 AVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium tuberculosis (taxid: 1773)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  156 bits (395), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 184/408 (45%), Gaps = 52/408 (12%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG 84
           DD+AT  YTSGTTG PKGV+LTH NL+  +      V   + D ++S LP  H+YERA  
Sbjct: 261 DDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYISYLPLAHIYERANQ 320

Query: 85  YFIFSRGIELMYTAVRNLK--DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVV 142
                 G+ + +    N+K  DDL   +P    SVP +Y  +Y+GI   + TS   +  +
Sbjct: 321 ILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERL 380

Query: 143 ARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLV 202
             A      AY A K+                  AL++   A  I    W      ++LV
Sbjct: 381 FNA------AYNAKKQ------------------ALLNGKSASPI----W------DRLV 406

Query: 203 YKKIQSAIGISKAGVSGGGS--LPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV 260
           + KI+  +G     ++ G S   P  ++      G +V  GYG+TE+S VI+      N+
Sbjct: 407 FNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL 466

Query: 261 LGSVGHPINHTEIKIVDAETNEVLPAGS---KGIVKVRGSQVMQGYFKNPSATKQALDED 317
            G VG P    E+K+VD        A     +G + VRG  +  GY+K+   TK+ +DED
Sbjct: 467 TGHVGSPNPACEVKLVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDED 526

Query: 318 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLI 377
           GWL+TGDIG   P          GG L +  R K+   L+ GE + P ++E    +   +
Sbjct: 527 GWLHTGDIGLWLP----------GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFV 576

Query: 378 RQIVVIGQDQRRPGAIIVPDKEEVLMA-AKRLSIVHADASELSKEKTI 424
            Q  + G         +V    +VL + A    I   D  EL     +
Sbjct: 577 GQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIKGGDLRELCNNPRV 624

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 189/411 (45%), Gaps = 57/411 (13%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQ----IRSLYDIVPAENGDKFLSMLPPWHVYE 80
           +D+A   +TSGTTGNPKG M+TH+N+++     I++      A   D  +S LP  H++E
Sbjct: 269 EDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIKATESAFIASTDDVLISFLPLAHMFE 328

Query: 81  RACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA 138
                 +   G ++ +    +R L DDL+  QP     VP +   ++  I  Q       
Sbjct: 329 TVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQ------- 381

Query: 139 RRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLA 198
                        A T+ KR    F   R + +    +   + LW               
Sbjct: 382 -------------ANTSLKRWLLDFASKRKEAELRSGIVRNNSLW--------------- 413

Query: 199 EKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARR 255
           +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +       
Sbjct: 414 DKLIFHKIQSSLG-GKVRLMITGAAPVSATVLTFLRTALGCQFYEGYGQTECTAGCCLSL 472

Query: 256 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD 315
           P     G VG P+    +K+VD E    L +  +G V V+G+ V +GY K+P+ T +ALD
Sbjct: 473 PGDWTAGHVGAPMPCNYVKLVDVEEMNYLASKGEGEVCVKGANVFKGYLKDPARTAEALD 532

Query: 316 EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS 375
           +DGWL+TGDIG   P+          G L +  R K    L+ GE + P ++E   LRS 
Sbjct: 533 KDGWLHTGDIGKWLPN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYLRSE 582

Query: 376 LIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 425
            + Q+ V G+  Q    A++VPD E +   A++  +      EL + K I+
Sbjct: 583 AVAQVFVHGESLQAFLIAVVVPDVESLPSWAQKRGL-QGSFEELCRNKDIN 632

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1

 Score =  155 bits (391), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 185/409 (45%), Gaps = 55/409 (13%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQ----IRSLYDIVPAENGDKFLSMLPPWHVYE 80
           +D+A   +TSGTTGNPKG M+TH+N++      +++  + V     D  +S LP  H++E
Sbjct: 268 EDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVNPCPDDTLISFLPLAHMFE 327

Query: 81  RACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA 138
           R     +   G ++ +    +R L DDL+  QP     VP +   ++  I  Q       
Sbjct: 328 RVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRMFDRIFGQ------- 380

Query: 139 RRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLA 198
                        A T  KR    F   R + +    +   + LW R             
Sbjct: 381 -------------ANTTLKRWLLDFASKRKEAELRSGIIRNNSLWDR------------- 414

Query: 199 EKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRP 256
             L++ K+QS++G   +  V+G   +   +  F  A +G +   GYG TE +       P
Sbjct: 415 --LIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTMP 472

Query: 257 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 316
                G VG P+    IK+VD E    + A  +G V V+G  V QGY K+P+ T +ALD+
Sbjct: 473 GDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEALDK 532

Query: 317 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 376
           DGWL+TGDIG   P+          G L +  R K    L+ GE + P ++E   +RS  
Sbjct: 533 DGWLHTGDIGKWLPN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYMRSEP 582

Query: 377 IRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 424
           + Q+ V G+  Q    AI+VPD E +   A++         EL + K +
Sbjct: 583 VAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF-EGSFEELCRNKDV 630

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1

 Score =  153 bits (386), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 186/410 (45%), Gaps = 57/410 (13%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQ----IRSLYDIVPAENGDKFLSMLPPWHVYE 80
           DD+A   +TSGTTGNPKG M+THKN++      +++    +     D  +S LP  H+YE
Sbjct: 268 DDLAVICFTSGTTGNPKGAMITHKNVVSDCSAFVKATEKALVLNASDIHISFLPLAHMYE 327

Query: 81  RACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA 138
           +     +   G ++ +    +R L DDL+  QP     VP +   ++  I  Q       
Sbjct: 328 QLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIFAQ------- 380

Query: 139 RRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLA 198
                        A T  KR    F   R + +    +   + +W               
Sbjct: 381 -------------ANTTVKRWLLDFASKRKEAELRSGIIRNNSVW--------------- 412

Query: 199 EKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARR 255
           +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +   +   
Sbjct: 413 DKLIFHKIQSSLG-GKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCSLSV 471

Query: 256 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD 315
           P     G VG P+    IK+VD E    + A  +G V V+G  V +GY K+P+ T +ALD
Sbjct: 472 PGDWTAGHVGAPMPCNFIKLVDVEEMNYMAAMGEGEVCVKGPNVFKGYLKDPAKTAEALD 531

Query: 316 EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS 375
           +DGWL+TGDIG   P+          G L +  R K    L+ GE + P ++E   +RS 
Sbjct: 532 KDGWLHTGDIGKWLPN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYVRSE 581

Query: 376 LIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 424
            + Q+ V G+  Q    AI+VPD E +   A++         EL + K +
Sbjct: 582 PVAQVFVHGESLQAFLIAIVVPDAESLASWARKRGF-EGSFEELCRNKDV 630

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Cavia porcellus (taxid: 10141)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
224129204	706	predicted protein [Populus trichocarpa]	0.960	0.627	0.753	0.0
296089272	730	unnamed protein product [Vitis vinifera]	0.960	0.606	0.756	0.0
225439252	691	PREDICTED: long-chain-fatty-acid--CoA li	0.960	0.641	0.756	0.0
356512427	733	PREDICTED: putative acyl-CoA synthetase	0.960	0.604	0.731	0.0
22331297	722	AMP-dependent synthetase and ligase fami	0.952	0.608	0.718	0.0
224055821	694	predicted protein [Populus trichocarpa]	0.960	0.638	0.733	0.0
20799733	722	acyl-CoA synthetase-like protein [Arabid	0.952	0.608	0.718	0.0
297835432	722	hypothetical protein ARALYDRAFT_898924 [	0.958	0.612	0.713	0.0
449527657	672	PREDICTED: probable acyl-activating enzy	0.960	0.659	0.699	0.0
449441378	731	PREDICTED: probable acyl-activating enzy	0.960	0.606	0.699	0.0

>gi|224129204|ref|XP_002328916.1| predicted protein [Populus trichocarpa] gi|222839346|gb|EEE77683.1| predicted protein [Populus trichocarpa]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/443 (75%), Positives = 383/443 (86%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
           A +HYKYETI SDDIAT VYTSGTTGNPKGVMLTHKNLLHQI +L+D+VPA+  D+FLSM
Sbjct: 236 ARQHYKYETISSDDIATLVYTSGTTGNPKGVMLTHKNLLHQINNLWDVVPAQPADRFLSM 295

Query: 73  LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI 132
           LPPWH YERA  YFIF+ G E +YT VRNLK DLQ+YQPHY+I+VPLV+ETLYSGIQKQ+
Sbjct: 296 LPPWHAYERAAEYFIFTHGTEQVYTTVRNLKVDLQQYQPHYLITVPLVFETLYSGIQKQL 355

Query: 133 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
            TSSA R+++A   I+IS  Y   KRIYEG  L R++K+P Y V+++DWLWARII AIL 
Sbjct: 356 STSSALRKILAFMFIKISLTYMEMKRIYEGTYLVRSRKEPPYFVSMLDWLWARIIAAILL 415

Query: 193 PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
           P+H+LA+KLVY KI SAIGISKAGVSGGGSLP H+D F+EAIGV VQ GYG+TESSPV A
Sbjct: 416 PVHMLAKKLVYSKIHSAIGISKAGVSGGGSLPSHVDKFFEAIGVVVQNGYGMTESSPVTA 475

Query: 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
           ARRP+ NVLGS+G PI HTE KIVDAET E LP GSKGIVKVRG QVM+GY+KNP ATKQ
Sbjct: 476 ARRPSNNVLGSIGLPIRHTEFKIVDAETGEALPHGSKGIVKVRGPQVMKGYYKNPLATKQ 535

Query: 313 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
           A+DEDGWLN+GDIGWIAP+HSRGRSR CGGV+VLEGRAKDTIVL TGENVEPLELEEAA+
Sbjct: 536 AVDEDGWLNSGDIGWIAPYHSRGRSRHCGGVIVLEGRAKDTIVLLTGENVEPLELEEAAM 595

Query: 373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR 432
           RSSLI+QIVVIGQDQRR GAI+VP+K+EVL AAK+ SIV  DA+ELSK++  SLL  ELR
Sbjct: 596 RSSLIQQIVVIGQDQRRLGAIVVPNKDEVLEAAKKWSIVDPDATELSKKQITSLLNEELR 655

Query: 433 KWTSKCSFQIGPIHVVDEPFTVN 455
           KWTS CSFQIGPI V+DEPFT++
Sbjct: 656 KWTSGCSFQIGPILVIDEPFTID 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089272|emb|CBI39044.3| unnamed protein product [Vitis vinifera]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/443 (75%), Positives = 380/443 (85%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
           A K+Y YE I S+DIAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPAE GD+FLSM
Sbjct: 260 ARKNYIYEAISSNDIATLVYTSGTTGNPKGVMLTHQNLLHQIKNLWDIVPAEPGDRFLSM 319

Query: 73  LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI 132
           LP WH YERA  YFIF+ GIE +YT V NLK+DL+RYQP Y+ISVPLVYETLYSGIQKQI
Sbjct: 320 LPSWHAYERASEYFIFTHGIEQVYTTVPNLKEDLRRYQPQYLISVPLVYETLYSGIQKQI 379

Query: 133 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
            TSS  R++VA   IRIS AY   KRIYEG  L ++QKQ SY+ ++ DWLWA+II AILW
Sbjct: 380 STSSTVRKLVALTFIRISLAYMELKRIYEGKFLQKSQKQYSYIASIFDWLWAKIIAAILW 439

Query: 193 PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
           P+H+L +KLVY KI SAIGISKAGVSGGGSLP H+D F+EAI +KVQ GYGLTE SPV A
Sbjct: 440 PVHMLGKKLVYSKIHSAIGISKAGVSGGGSLPSHVDRFFEAIDIKVQNGYGLTECSPVTA 499

Query: 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
           ARRPTCNVLGSVGHPI HTEIKIVD+ET+E+LP GSKGIVKV+G  VM+GY+KN  ATK+
Sbjct: 500 ARRPTCNVLGSVGHPIRHTEIKIVDSETDELLPPGSKGIVKVKGPHVMKGYYKNELATKK 559

Query: 313 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
            LDEDGWLNTGDIGWIAPHHS GRSR CGGV+VLEGRAKDTIVLSTGENVEP ELEEAA+
Sbjct: 560 VLDEDGWLNTGDIGWIAPHHSVGRSRHCGGVIVLEGRAKDTIVLSTGENVEPTELEEAAM 619

Query: 373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR 432
           RS+LI+QIVVIGQDQRR GAIIVP+KEEVL AAKRLSI++A+ SELSKEK   LL+ E+R
Sbjct: 620 RSTLIQQIVVIGQDQRRLGAIIVPNKEEVLAAAKRLSILNANTSELSKEKITGLLHEEIR 679

Query: 433 KWTSKCSFQIGPIHVVDEPFTVN 455
            WT   SFQIGPI VVDEPFT++
Sbjct: 680 TWTEGFSFQIGPILVVDEPFTID 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439252|ref|XP_002263501.1| PREDICTED: long-chain-fatty-acid--CoA ligase FadD15-like [Vitis vinifera]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/443 (75%), Positives = 380/443 (85%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
           A K+Y YE I S+DIAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPAE GD+FLSM
Sbjct: 221 ARKNYIYEAISSNDIATLVYTSGTTGNPKGVMLTHQNLLHQIKNLWDIVPAEPGDRFLSM 280

Query: 73  LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI 132
           LP WH YERA  YFIF+ GIE +YT V NLK+DL+RYQP Y+ISVPLVYETLYSGIQKQI
Sbjct: 281 LPSWHAYERASEYFIFTHGIEQVYTTVPNLKEDLRRYQPQYLISVPLVYETLYSGIQKQI 340

Query: 133 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
            TSS  R++VA   IRIS AY   KRIYEG  L ++QKQ SY+ ++ DWLWA+II AILW
Sbjct: 341 STSSTVRKLVALTFIRISLAYMELKRIYEGKFLQKSQKQYSYIASIFDWLWAKIIAAILW 400

Query: 193 PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
           P+H+L +KLVY KI SAIGISKAGVSGGGSLP H+D F+EAI +KVQ GYGLTE SPV A
Sbjct: 401 PVHMLGKKLVYSKIHSAIGISKAGVSGGGSLPSHVDRFFEAIDIKVQNGYGLTECSPVTA 460

Query: 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
           ARRPTCNVLGSVGHPI HTEIKIVD+ET+E+LP GSKGIVKV+G  VM+GY+KN  ATK+
Sbjct: 461 ARRPTCNVLGSVGHPIRHTEIKIVDSETDELLPPGSKGIVKVKGPHVMKGYYKNELATKK 520

Query: 313 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
            LDEDGWLNTGDIGWIAPHHS GRSR CGGV+VLEGRAKDTIVLSTGENVEP ELEEAA+
Sbjct: 521 VLDEDGWLNTGDIGWIAPHHSVGRSRHCGGVIVLEGRAKDTIVLSTGENVEPTELEEAAM 580

Query: 373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR 432
           RS+LI+QIVVIGQDQRR GAIIVP+KEEVL AAKRLSI++A+ SELSKEK   LL+ E+R
Sbjct: 581 RSTLIQQIVVIGQDQRRLGAIIVPNKEEVLAAAKRLSILNANTSELSKEKITGLLHEEIR 640

Query: 433 KWTSKCSFQIGPIHVVDEPFTVN 455
            WT   SFQIGPI VVDEPFT++
Sbjct: 641 TWTEGFSFQIGPILVVDEPFTID 663

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512427|ref|XP_003524920.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Glycine max]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/443 (73%), Positives = 379/443 (85%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
           AG+ Y YE I +D IAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPAE GD+FLSM
Sbjct: 263 AGQRYIYEAINTDSIATLVYTSGTTGNPKGVMLTHRNLLHQIKNLWDIVPAEAGDRFLSM 322

Query: 73  LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI 132
           LPPWH YERAC YFIF+ GIE +YT VRNLKDDLQRYQP Y+ISVPLV+ETLYSGI KQI
Sbjct: 323 LPPWHAYERACEYFIFTCGIEQVYTTVRNLKDDLQRYQPQYLISVPLVFETLYSGIMKQI 382

Query: 133 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
            T S  R++VA   IR S AY  +KRIYEG CLT+N+KQ SY  +++DWLWAR I  IL 
Sbjct: 383 STGSVVRKLVALTFIRSSIAYMEYKRIYEGKCLTKNKKQASYAYSMLDWLWARTIATILL 442

Query: 193 PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
           PLH+LA+KLVY KI SAIGISKAG+SGGGSLP  +D F+EAIGVKVQ GYGLTE+SPVIA
Sbjct: 443 PLHILAKKLVYSKIHSAIGISKAGISGGGSLPWEVDKFFEAIGVKVQNGYGLTETSPVIA 502

Query: 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
           ARRP CNV+GSVGHPI HTE KIVD+ET+EVLP GSKGI+KVRG QVM+GYFKN  AT Q
Sbjct: 503 ARRPRCNVIGSVGHPIRHTEFKIVDSETDEVLPPGSKGILKVRGPQVMEGYFKNSLATNQ 562

Query: 313 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
           ALD DGWLNTGDIGWI PHHS GRSR   GV+V+EGRAKDTIVLSTGENVEPLELEEAA+
Sbjct: 563 ALDGDGWLNTGDIGWIVPHHSTGRSRNSSGVIVVEGRAKDTIVLSTGENVEPLELEEAAM 622

Query: 373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR 432
           RSS+I+QIVV+GQD+RR GA+IVP+KEEVL  A++LSI+ +++S++S+EK  SL+Y EL+
Sbjct: 623 RSSIIQQIVVVGQDKRRLGAVIVPNKEEVLKVARKLSIIDSNSSDVSEEKVTSLIYKELK 682

Query: 433 KWTSKCSFQIGPIHVVDEPFTVN 455
            WTS+  FQIGPI +V+EPFT++
Sbjct: 683 TWTSESPFQIGPILLVNEPFTID 705

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331297|ref|NP_189021.2| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] gi|75311239|sp|Q9LK39.1|AAE16_ARATH RecName: Full=Probable acyl-activating enzyme 16, chloroplastic; Flags: Precursor gi|9293952|dbj|BAB01855.1| long-chain-fatty-acid CoA ligase [Arabidopsis thaliana] gi|332643293|gb|AEE76814.1| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/440 (71%), Positives = 376/440 (85%), Gaps = 1/440 (0%)

Query: 17  YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPW 76
           Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP W
Sbjct: 255 YEYEYIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSW 314

Query: 77  HVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSS 136
           H YERAC YFIF+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS
Sbjct: 315 HAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASS 374

Query: 137 AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHL 196
            AR+ +A  LI++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+
Sbjct: 375 PARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHM 434

Query: 197 LAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP 256
           LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR 
Sbjct: 435 LAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRL 494

Query: 257 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 316
            CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+
Sbjct: 495 RCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDD 554

Query: 317 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 376
           DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+L
Sbjct: 555 DGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNL 614

Query: 377 IRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWT 435
           I+QIVVIGQDQRR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWT
Sbjct: 615 IQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWT 674

Query: 436 SKCSFQIGPIHVVDEPFTVN 455
           S+CSFQ+GP+ +VDEPFT++
Sbjct: 675 SQCSFQVGPVLIVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055821|ref|XP_002298670.1| predicted protein [Populus trichocarpa] gi|222845928|gb|EEE83475.1| predicted protein [Populus trichocarpa]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/443 (73%), Positives = 379/443 (85%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
           A +HYKYETI SDDIAT VYTSGTTGNPKGVMLTHKNLLHQI + ++IVPA+  D+FLSM
Sbjct: 224 ARQHYKYETISSDDIATLVYTSGTTGNPKGVMLTHKNLLHQINNFWEIVPAQPADRFLSM 283

Query: 73  LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI 132
           LPPWH YERAC YFIF+ G E +YT VRN K DLQ+YQPHY+ISVPLV+ETLYSGIQKQI
Sbjct: 284 LPPWHAYERACEYFIFANGAEQVYTTVRNFKVDLQQYQPHYLISVPLVFETLYSGIQKQI 343

Query: 133 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
             SS  R+++A   I+IS AY   KRIYEG  LTR+Q + SY V+++ WL ARI  AIL 
Sbjct: 344 SKSSTLRKLLAFTFIKISLAYMEMKRIYEGTYLTRSQNEQSYFVSILGWLRARIFAAILL 403

Query: 193 PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
           P+H+LAEKLVY KIQSAIGI KAGVSGGGSLP H+D F+EAIGV +  GYG+TESSPV+A
Sbjct: 404 PVHMLAEKLVYSKIQSAIGIRKAGVSGGGSLPAHVDKFFEAIGVVLLNGYGMTESSPVLA 463

Query: 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
           AR+ + NVLGSVGHPI HTE KIVDAET + LP GSKGIV+VRG QVM+GY+KNP ATKQ
Sbjct: 464 ARQLSNNVLGSVGHPIRHTEFKIVDAETGKSLPYGSKGIVRVRGPQVMKGYYKNPLATKQ 523

Query: 313 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
           A+DEDGWLNTGD+GWIAP+HSRG+S RCGG++VLEGRAKDTIVLSTGENVEPLELEEAA+
Sbjct: 524 AVDEDGWLNTGDLGWIAPYHSRGKSCRCGGIIVLEGRAKDTIVLSTGENVEPLELEEAAM 583

Query: 373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR 432
           +SSLI+QIVVIGQDQRR GAI+VP+KEEVL  AK+LSIV ADA+ELSK++  +LL  ELR
Sbjct: 584 KSSLIQQIVVIGQDQRRLGAIVVPNKEEVLEVAKKLSIVDADATELSKKQIANLLDKELR 643

Query: 433 KWTSKCSFQIGPIHVVDEPFTVN 455
           KWTS+ SFQIGP+ V+DE FT++
Sbjct: 644 KWTSEASFQIGPVLVIDESFTID 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20799733|gb|AAM28629.1|AF503771_1 acyl-CoA synthetase-like protein [Arabidopsis thaliana]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/440 (71%), Positives = 376/440 (85%), Gaps = 1/440 (0%)

Query: 17  YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPW 76
           Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP W
Sbjct: 255 YEYEYIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSW 314

Query: 77  HVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSS 136
           H YERAC YFIF+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS
Sbjct: 315 HAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASS 374

Query: 137 AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHL 196
            AR+ +A  LI++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+
Sbjct: 375 PARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHM 434

Query: 197 LAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP 256
           LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR 
Sbjct: 435 LAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRL 494

Query: 257 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 316
            CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+
Sbjct: 495 RCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDD 554

Query: 317 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 376
           DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+L
Sbjct: 555 DGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNL 614

Query: 377 IRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWT 435
           I+QIVVIGQDQRR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWT
Sbjct: 615 IQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWT 674

Query: 436 SKCSFQIGPIHVVDEPFTVN 455
           S+CSFQ+GP+ +VDEPFT++
Sbjct: 675 SQCSFQVGPVLIVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835432|ref|XP_002885598.1| hypothetical protein ARALYDRAFT_898924 [Arabidopsis lyrata subsp. lyrata] gi|297331438|gb|EFH61857.1| hypothetical protein ARALYDRAFT_898924 [Arabidopsis lyrata subsp. lyrata]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/444 (71%), Positives = 378/444 (85%), Gaps = 2/444 (0%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
           AGK Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSM
Sbjct: 252 AGK-YEYEFIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSM 310

Query: 73  LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI 132
           LP WH YERAC YFIF+ G+E  YT++R LK DL++YQPHY+ISVPLVYETLYSGIQKQI
Sbjct: 311 LPSWHAYERACEYFIFTCGVEQKYTSIRFLKGDLKQYQPHYLISVPLVYETLYSGIQKQI 370

Query: 133 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
            TSS  R+ +A  LI++S AYT  KRIYEG CLT+NQK P Y+V+L+DWLWAR++  +LW
Sbjct: 371 STSSPVRKFLALTLIKVSLAYTEMKRIYEGLCLTKNQKPPLYIVSLVDWLWARVVAFVLW 430

Query: 193 PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
           PLH+LAEKLV+KKI+S+IGI+KAGVSGGGSLPMH+D F+EAI V VQ GYGLTE+SPV++
Sbjct: 431 PLHILAEKLVHKKIRSSIGITKAGVSGGGSLPMHVDKFFEAISVNVQNGYGLTETSPVVS 490

Query: 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
           ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ
Sbjct: 491 ARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQ 550

Query: 313 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
            +D+DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+
Sbjct: 551 VIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAM 610

Query: 373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGEL 431
           RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V  + +ELSKE+  S++Y EL
Sbjct: 611 RSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDPEVNELSKERITSMVYEEL 670

Query: 432 RKWTSKCSFQIGPIHVVDEPFTVN 455
           +KWTS+CSFQ+GP+ +VDEPFT++
Sbjct: 671 KKWTSQCSFQVGPVLIVDEPFTID 694

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527657|ref|XP_004170826.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like, partial [Cucumis sativus]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/443 (69%), Positives = 374/443 (84%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
           A + Y YE I SDDIAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPA+ GDKFLSM
Sbjct: 202 AKQCYTYEPINSDDIATLVYTSGTTGNPKGVMLTHRNLLHQIKNLWDIVPAKVGDKFLSM 261

Query: 73  LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI 132
           LPPWH YERAC YFIF+ G+E  YT +RNLKDDL+ YQP Y+ISVPLVYETLYSGIQKQI
Sbjct: 262 LPPWHAYERACEYFIFTFGVEQAYTTIRNLKDDLRHYQPDYLISVPLVYETLYSGIQKQI 321

Query: 133 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
             SS  R+++  A I +S AY   KRIYEG  LTR+  QP++LV+ +DWL+AR+  +ILW
Sbjct: 322 LASSNLRKLIVLAFINVSLAYMELKRIYEGTYLTRSNVQPTHLVSALDWLFARMTASILW 381

Query: 193 PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
           P+H+LA+ +VY K+QSAIGI KAG+SGGGSLP H+DLF+EAIG+ VQ GYGLTE SPV+A
Sbjct: 382 PIHMLAKIIVYSKVQSAIGIWKAGISGGGSLPSHVDLFFEAIGITVQNGYGLTECSPVVA 441

Query: 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
           ARRPTCNVLGSVGHPI HTE +IVD ET + LP GS+GIV+VRG QVM+GY+KN SAT+Q
Sbjct: 442 ARRPTCNVLGSVGHPIRHTEFRIVDMETGDALPPGSRGIVEVRGPQVMKGYYKNSSATQQ 501

Query: 313 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
            LD++GW ++GDIGWIAPHHSRGRSRRCGGV+VL+GRAKDTIVL TGENVEP  +EEAA+
Sbjct: 502 VLDKEGWFSSGDIGWIAPHHSRGRSRRCGGVIVLDGRAKDTIVLLTGENVEPTVIEEAAM 561

Query: 373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR 432
           RS+LI+QIVVIGQDQRR GAI+ P+KEEVL AAK+LS   +  S++S E   +L+Y E+R
Sbjct: 562 RSTLIQQIVVIGQDQRRLGAIVFPNKEEVLSAAKKLSAEDSSTSDVSNETLTNLIYSEVR 621

Query: 433 KWTSKCSFQIGPIHVVDEPFTVN 455
           KWTS+C FQIGPI +V+EPFT++
Sbjct: 622 KWTSECPFQIGPILIVNEPFTID 644

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441378|ref|XP_004138459.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Cucumis sativus]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/443 (69%), Positives = 374/443 (84%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
           A + Y YE I SDDIAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPA+ GDKFLSM
Sbjct: 261 AKQCYTYEPINSDDIATLVYTSGTTGNPKGVMLTHRNLLHQIKNLWDIVPAKVGDKFLSM 320

Query: 73  LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI 132
           LPPWH YERAC YFIF+ G+E  YT +RNLKDDL+ YQP Y+ISVPLVYETLYSGIQKQI
Sbjct: 321 LPPWHAYERACEYFIFTFGVEQAYTTIRNLKDDLRHYQPDYLISVPLVYETLYSGIQKQI 380

Query: 133 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
             SS  R+++  A I +S AY   KRIYEG  LTR+  QP++LV+ +DWL+AR+  +ILW
Sbjct: 381 LASSNLRKLIVLAFINVSLAYMELKRIYEGTYLTRSNVQPTHLVSALDWLFARMTASILW 440

Query: 193 PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
           P+H+LA+ +VY K+QSAIGI KAG+SGGGSLP H+DLF+EAIG+ VQ GYGLTE SPV+A
Sbjct: 441 PIHMLAKIIVYSKVQSAIGIWKAGISGGGSLPSHVDLFFEAIGITVQNGYGLTECSPVVA 500

Query: 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
           ARRPTCNVLGSVGHPI HTE +IVD ET + LP GS+GIV+VRG QVM+GY+KN SAT+Q
Sbjct: 501 ARRPTCNVLGSVGHPIRHTEFRIVDMETGDALPPGSRGIVEVRGPQVMKGYYKNSSATQQ 560

Query: 313 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
            LD++GW ++GDIGWIAPHHSRGRSRRCGGV+VL+GRAKDTIVL TGENVEP  +EEAA+
Sbjct: 561 VLDKEGWFSSGDIGWIAPHHSRGRSRRCGGVIVLDGRAKDTIVLLTGENVEPTVIEEAAM 620

Query: 373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR 432
           RS+LI+QIVVIGQDQRR GAI+ P+KEEVL AAK+LS   +  S++S E   +L+Y E+R
Sbjct: 621 RSTLIQQIVVIGQDQRRLGAIVFPNKEEVLSAAKKLSAEDSSTSDVSNETLTNLIYSEVR 680

Query: 433 KWTSKCSFQIGPIHVVDEPFTVN 455
           KWTS+C FQIGPI +V+EPFT++
Sbjct: 681 KWTSECPFQIGPILIVNEPFTID 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
TAIR|locus:2095173	722	AAE16 "acyl activating enzyme	0.958	0.612	0.673	5e-163
TAIR|locus:2129371	727	AAE15 "acyl-activating enzyme	0.934	0.592	0.648	6.5e-154
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.531	0.348	0.303	3.3e-33
UNIPROTKB|Q9KP89	601	VC_2484 "Long-chain-fatty-acid	0.494	0.379	0.303	1.8e-32
TIGR_CMR|VC_2484	601	VC_2484 "long-chain-fatty-acid	0.494	0.379	0.303	1.8e-32
ZFIN|ZDB-GENE-040801-88	729	zgc:101071 "zgc:101071" [Danio	0.529	0.334	0.320	4.3e-32
UNIPROTKB|F1RSZ3	699	ACSL1 "Uncharacterized protein	0.466	0.307	0.339	2.5e-31
UNIPROTKB|Q0VCZ8	699	ACSL1 "Acyl-CoA synthetase lon	0.466	0.307	0.347	4.5e-31
UNIPROTKB|F1NNV2	683	ACSL5 "Uncharacterized protein	0.533	0.360	0.299	5.6e-31
MGI|MGI:102797	699	Acsl1 "acyl-CoA synthetase lon	0.468	0.309	0.320	6e-31

TAIR|locus:2095173 AAE16 "acyl activating enzyme 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
 Identities = 299/444 (67%), Positives = 354/444 (79%)

Query:    13 AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
             +GK Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSM
Sbjct:   252 SGK-YEYEYIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSM 310

Query:    73 LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI 132
             LP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI
Sbjct:   311 LPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQI 370

Query:   133 FTSSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 192
               SS             S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LW
Sbjct:   371 SASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLW 430

Query:   193 PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
             PLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++
Sbjct:   431 PLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVS 490

Query:   253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
             ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ
Sbjct:   491 ARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQ 550

Query:   313 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 372
              +D+DGW NTGD+GWI P H          V+VLEGRAKDTIVLSTGENVEP        
Sbjct:   551 VIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAM 610

Query:   373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGEL 431
             RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y EL
Sbjct:   611 RSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEEL 670

Query:   432 RKWTSKCSFQIGPIHVVDEPFTVN 455
             RKWTS+CSFQ+GP+ +VDEPFT++
Sbjct:   671 RKWTSQCSFQVGPVLIVDEPFTID 694

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2129371 AAE15 "acyl-activating enzyme 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1501 (533.4 bits), Expect = 6.5e-154, P = 6.5e-154
 Identities = 286/441 (64%), Positives = 339/441 (76%)

Query:    15 KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 74
             + Y+ + I SDD A  +YTSGTTGNPKGVMLTH+NLLHQI+ L   VPA+ GDKFLSMLP
Sbjct:   269 RSYRNQFIDSDDTAAIMYTSGTTGNPKGVMLTHRNLLHQIKHLSKYVPAQAGDKFLSMLP 328

Query:    75 PWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFT 134
              WH YERA  YFIF+ G+E MYT++R LKDDL+RYQP+Y++SVPLVYETLYSGIQKQI  
Sbjct:   329 SWHAYERASEYFIFTCGVEQMYTSIRYLKDDLKRYQPNYIVSVPLVYETLYSGIQKQISA 388

Query:   135 SSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPL 194
             SS             S AY   KRIYEG CLT+ QK P Y+VA +DWLWAR+I A+LWPL
Sbjct:   389 SSAGRKFLALTLIKVSMAYMEMKRIYEGMCLTKEQKPPMYIVAFVDWLWARVIAALLWPL 448

Query:   195 HLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR 254
             H+LA+KL+YKKI S+IGISKAG+SGGGSLP+H+D F+EAIGV +Q GYGLTE+SPV+ AR
Sbjct:   449 HMLAKKLIYKKIHSSIGISKAGISGGGSLPIHVDKFFEAIGVILQNGYGLTETSPVVCAR 508

Query:   255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 314
               +CNVLGS GHP++ TE KIVD ETN VLP GSKGI+KVRG QVM+GY+KNPS TKQ L
Sbjct:   509 TLSCNVLGSAGHPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYYKNPSTTKQVL 568

Query:   315 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRS 374
             +E GW NTGD GWIAPHH          V+VLEGRAKDTIVLSTGENVEP        RS
Sbjct:   569 NESGWFNTGDTGWIAPHHSKGRSRHCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRS 628

Query:   375 SLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 434
              +I QIVVIGQD+RR GAII+P+KEE    A+R+        E SKE   SL+Y ELRKW
Sbjct:   629 RVIEQIVVIGQDRRRLGAIIIPNKEE----AQRVD------PETSKETLKSLVYQELRKW 678

Query:   435 TSKCSFQIGPIHVVDEPFTVN 455
             TS+CSFQ+GP+ +VD+PFT++
Sbjct:   679 TSECSFQVGPVLIVDDPFTID 699

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0008922 "long-chain fatty acid [acyl-carrier-protein

GO:0009536 "plastid" evidence=IDA

GO:0030497 "fatty acid elongation" evidence=IDA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
 Identities = 80/264 (30%), Positives = 123/264 (46%)

Query:   199 EKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRP 256
             +KLV+KK+  A G + +  V G   L  ++  F   A+G  V  GYG TE +  I     
Sbjct:   420 DKLVFKKVHQAFGGNLRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTECTGAITLTVQ 479

Query:   257 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 316
               +V   VG P++   +K+VD    E     + G V VRGS V  GY+K+P  T +A+D 
Sbjct:   480 GDHVPNHVGPPVSCNAVKLVDVPEMEYFANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDS 539

Query:   317 DGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSL 376
             +GW +TGD+G   P+            L +  R K    LS GE + P         S  
Sbjct:   540 EGWHHTGDVGMWLPN----------GTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQY 589

Query:   377 IRQIVVIGQDQRRPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS-LLYGELRKW 434
             + Q+ V G+  +    A++VPD + VL      + V    S L   K +  L+  ++  W
Sbjct:   590 VNQVYVYGESLKSCIIAVVVPDTD-VLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNW 648

Query:   435 TSKC---SF-QIGPIHVVDEPFTV 454
               +    SF Q+  I++  +PF+V
Sbjct:   649 GKQSGLKSFEQVKDIYLHPDPFSV 672

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q9KP89 VC_2484 "Long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 247 (92.0 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   195 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   313 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 372
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 424
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   425 SLLYGELRKWTSKCSFQIGP 444
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TIGR_CMR|VC_2484 VC_2484 "long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 247 (92.0 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   195 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 252
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 312
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   313 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 372
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   373 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 424
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   425 SLLYGELRKWTSKCSFQIGP 444
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

ZFIN|ZDB-GENE-040801-88 zgc:101071 "zgc:101071" [Danio rerio (taxid:7955)]

 Score = 257 (95.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 85/265 (32%), Positives = 127/265 (47%)

Query:   199 EKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRP 256
             +K+++KK+Q+++G   +  V+G   +   +  F  A +G +   GYG TE +       P
Sbjct:   412 DKIIFKKVQASVGGCVRMMVTGAAPISEPVLTFLRAALGCQFYEGYGQTECTAGSTTTLP 471

Query:   257 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 316
                  G VG P+   +IK+VD        A  +G V VRG    +GY K+P  TK+ALDE
Sbjct:   472 GDWTAGHVGAPLPCNDIKLVDVAEMNYYAANGEGEVCVRGPNAFKGYLKDPEKTKEALDE 531

Query:   317 DGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSS 375
             +GW++TGDIG W+ P+            L +  R K    L+ GE + P        RS 
Sbjct:   532 EGWVHTGDIGRWL-PNGS----------LKIVDRKKHIFKLAQGEYIAPEKIENIYIRSE 580

Query:   376 LIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI--SLLYG--E 430
              + Q  V G   Q    AIIVPD + +   AK+  I      +L K K I  ++L    +
Sbjct:   581 AVVQAFVHGDSLQACLVAIIVPDPDFLPGWAKKRGI-EGTYEDLCKNKDIKKAILEDIIK 639

Query:   431 LRKWTSKCSF-QIGPIHVVDEPFTV 454
             L K +   SF Q+  I +  E FT+
Sbjct:   640 LGKESGLKSFEQVKDIALHSEMFTI 664

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1RSZ3 ACSL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
 Identities = 79/233 (33%), Positives = 116/233 (49%)

Query:   197 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 253
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +   + 
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCSL 470

Query:   254 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 313
               P     G VG P+  + IK+VD E    L A  +G V V+G  V QGY K+P+ T +A
Sbjct:   471 TVPGDWTAGHVGAPMPCSLIKLVDVEEMNYLAAKGEGEVCVKGPNVFQGYLKDPAKTAEA 530

Query:   314 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 372
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYL 579

Query:   373 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 424
             RS  + Q+ V G+  Q    AI+VPD E +   A++   V     EL + K +
Sbjct:   580 RSEPVAQVFVHGESLQAFLIAIVVPDVETLGHWAQKRGFV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q0VCZ8 ACSL1 "Acyl-CoA synthetase long-chain family member 1" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
 Identities = 81/233 (34%), Positives = 115/233 (49%)

Query:   197 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 253
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +     
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCL 470

Query:   254 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 313
                     G VG P+  + IK+VD E    L A  +G V V+GS V QGY K+P  T +A
Sbjct:   471 TVAGDWTAGHVGPPMPCSIIKLVDVEEMNYLAAKGEGEVCVKGSNVFQGYLKDPVKTAEA 530

Query:   314 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 372
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYQ 579

Query:   373 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 424
             RS  I Q+ V G+  Q    AI+VPD E +   A++  IV     EL + K +
Sbjct:   580 RSEPIAQVFVHGESLQAFLIAIVVPDVETLGTWAQKRGIV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 5.6e-31, Sum P(2) = 5.6e-31
 Identities = 80/267 (29%), Positives = 127/267 (47%)

Query:   197 LAEKLVYKKIQSAIGIS-KAGVSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAAR 254
             L +KLV+KK+Q  +G   +  V+G   + P  +     A+G +V   YG TE S      
Sbjct:   396 LLDKLVFKKVQETMGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFS 455

Query:   255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 314
              P     G VG P+    IK+ D E      + ++G V ++G  V +GY K+P  T +A+
Sbjct:   456 MPGDWTTGHVGPPLVCNIIKLDDVEEMNYFSSNNEGEVCIKGPNVFKGYLKDPEKTAEAI 515

Query:   315 DEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXR 373
             D+DGWL+TGD+G W+ P+            L +  R K+   L+ GE + P        R
Sbjct:   516 DKDGWLHTGDVGKWM-PN----------GTLKIIDRKKNIFKLAQGEYIAPEKIENVYIR 564

Query:   374 SSLIRQIVVIGQDQRRPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTI--SLLYGE 430
             S  + Q+ V G+  R     I+VPD E +   A +L I      ++ K   +  ++L   
Sbjct:   565 SVAVAQVFVHGESLRSCLIGIVVPDAETLPEFAAKLGI-KGSYEDICKNPAVKKAILEDL 623

Query:   431 LR--KWTSKCSF-QIGPIHVVDEPFTV 454
             +R  K     SF Q+  +++  E F+V
Sbjct:   624 VRLGKAAGLKSFEQVKDLYIHTELFSV 650

GO:0003824 "catalytic activity" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

MGI|MGI:102797 Acsl1 "acyl-CoA synthetase long-chain family member 1" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 6.0e-31, Sum P(2) = 6.0e-31
 Identities = 75/234 (32%), Positives = 116/234 (49%)

Query:   197 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 253
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +     
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMITGAAPVSATVLTFLRTALGCQFYEGYGQTECTAGCCL 470

Query:   254 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 313
               P     G VG P+    +K+VD E    L +  +G V V+G+ V +GY K+P+ T +A
Sbjct:   471 SLPGDWTAGHVGAPMPCNYVKLVDVEEMNYLASKGEGEVCVKGANVFKGYLKDPARTAEA 530

Query:   314 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 372
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYL 579

Query:   373 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 425
             RS  + Q+ V G+  Q    A++VPD E +   A++  +      EL + K I+
Sbjct:   580 RSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQKRGL-QGSFEELCRNKDIN 632

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005777 "peroxisome" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006641 "triglyceride metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0010033 "response to organic substance" evidence=ISO

GO:0015908 "fatty acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IMP

GO:0042178 "xenobiotic catabolic process" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043758 "acetate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=ISO

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LK39	AAE16_ARATH	6, ., 2, ., 1, ., -	0.7181	0.9522	0.6080	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	461
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-123
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-121
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-72
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	3e-52
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-49
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	4e-40
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-39
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	9e-39
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-36
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	4e-35
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-34
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	8e-34
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-33
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	7e-33
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-32
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-32
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-31
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-31
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-31
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-31
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-30
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-30
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	5e-30
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-29
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-29
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-28
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-28
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	8e-28
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-27
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-27
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	9e-27
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	4e-26
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	7e-26
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-25
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-24
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	7e-24
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-23
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-23
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-22
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-22
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	2e-22
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-22
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-22
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	7e-22
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-21
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	5e-21
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-20
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-20
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-20
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-20
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-20
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	6e-20
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	8e-20
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	2e-19
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-19
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-19
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-18
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-17
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	8e-17
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-16
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-16
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-16
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-16
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-16
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	8e-16
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	9e-16
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-15
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-15
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-15
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-15
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-15
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-15
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	4e-15
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	7e-15
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	9e-15
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-14
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-14
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-14
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-14
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-14
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-14
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	5e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	5e-14
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-13
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-13
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-13
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	4e-13
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	7e-13
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-12
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-12
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-12
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-12
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-12
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	4e-12
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	6e-12
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-12
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-11
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-11
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-11
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-11
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-11
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-11
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-11
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	3e-11
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	6e-11
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	7e-11
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	7e-11
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	8e-11
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-10
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-10
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-10
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	4e-10
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	8e-10
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	8e-10
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	9e-10
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	9e-10
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-09
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-09
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	1e-09
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-09
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-09
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	3e-09
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-09
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-09
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	5e-09
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	9e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	9e-09
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-08
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-08
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-08
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-08
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	4e-08
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	4e-08
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-08
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	5e-08
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	6e-08
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	7e-08
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-08
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-07
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-07
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-07
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-07
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-07
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-07
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-07
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-07
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	3e-07
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-07
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-07
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	5e-07
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	5e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	5e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	6e-07
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	7e-07
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	7e-07
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	8e-07
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	8e-07
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-06
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-06
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-06
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-06
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-06
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-06
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-06
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	4e-06
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	5e-06
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	5e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	5e-06
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	6e-06
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	7e-06
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	7e-06
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	7e-06
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-05
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-05
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-05
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-05
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-05
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	3e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-05
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-05
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	4e-05
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-05
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-05
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	6e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-05
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	8e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	9e-05
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	9e-05
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-04
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-04
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	1e-04
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-04
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-04
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-04
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-04
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	3e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-04
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	6e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-04
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	7e-04
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	8e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	8e-04
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	0.001
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	0.001
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.001
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.001
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	0.001
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	0.001
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	0.002
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.002
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.002
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	0.002
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	0.003
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.003
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	0.003
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	0.004

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  371 bits (954), Expect = e-123
 Identities = 148/438 (33%), Positives = 227/438 (51%), Gaps = 57/438 (13%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-ENGDKFLSMLPPWHVYERA 82
            DD+AT +YTSGTTG PKGVMLTH+NLL Q+  + +++P    GD+ LS LP  H++ERA
Sbjct: 190 PDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERA 249

Query: 83  CGYFIF--SRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 140
               +        L     R L +DL+  +P  MI VP V+E +Y GI +++  + A RR
Sbjct: 250 FEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRR 309

Query: 141 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 200
            + R  +++++   +                              ++        L+A++
Sbjct: 310 KLFRWALKVAYKKIS----------------------------RALLGGGPLSWLLVADR 341

Query: 201 LVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN 259
           LV++KI+ A+G   +  +SGG  L   +  F+ ++G+ +  GYGLTE+S V++   P   
Sbjct: 342 LVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDRF 401

Query: 260 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW 319
           VLG+VG P+   E+KI D            G + VRG  VM+GY+KNP AT +A  EDGW
Sbjct: 402 VLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGW 450

Query: 320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 379
             TGD+G +             G LV+ GR K+ I LS G+N+ P  +E    +S LI Q
Sbjct: 451 FRTGDLGELDE----------DGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQ 500

Query: 380 IVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIV-HADASELSK-EKTISLLYGELRK-WTS 436
           I V+G D++   A+IVPD + +   A+ L+ V  A   EL++  K + L+   + K    
Sbjct: 501 ICVVGDDKKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKR 560

Query: 437 KCSF-QIGPIHVVDEPFT 453
              F QI    ++ + FT
Sbjct: 561 LFGFEQIKKFVLLPKEFT 578

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  361 bits (929), Expect = e-121
 Identities = 141/439 (32%), Positives = 207/439 (47%), Gaps = 91/439 (20%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 82
             DD+AT +YTSGTTGNPKGVMLTH+NLL Q  +L +++P   GD+ LS LP  HV+E+ 
Sbjct: 86  KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQR 145

Query: 83  CG-YFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 140
            G Y   S G  + +      L +DL+  +P    +VP V+E +Y+GI+ +         
Sbjct: 146 LGEYLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAK--------- 196

Query: 141 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 200
            VA A           KR                   L  W       A+          
Sbjct: 197 -VAAA--------GPLKR------------------KLFRW-------ALG--------- 213

Query: 201 LVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV 260
                     G  +  VSGG  LP  +  F+ A+G+ +  GYGLTE+S V    RP    
Sbjct: 214 ---------GGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATVNRPGDIR 264

Query: 261 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 320
           +G+VG P+   E++I +            G + VRG  VM+GY+KNP AT +ALDEDGWL
Sbjct: 265 IGTVGKPLPGVEVRIAE-----------DGEILVRGPNVMKGYYKNPEATAEALDEDGWL 313

Query: 321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 380
           +TGDIG +             G LV+  R KD IV + G+N+ P  +E A   S  I Q 
Sbjct: 314 HTGDIGRLD----------EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQA 363

Query: 381 VVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-----LRKWT 435
           VV+G D+    A+IV D E +   A++  +     ++L+++  +  L  +       +  
Sbjct: 364 VVVGDDRPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEANARLA 423

Query: 436 SKCSFQIGPIHVVDEPFTV 454
                QI    ++ + F++
Sbjct: 424 R--VEQIKKFVLLPKEFSI 440

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  238 bits (609), Expect = 1e-72
 Identities = 145/461 (31%), Positives = 203/461 (44%), Gaps = 67/461 (14%)

Query: 14  GKHYKYETI--GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG--DKF 69
           GK  K        +D+AT +YTSGTTGNPKGVMLTH N++  +  +  IVP   G  D +
Sbjct: 98  GKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVY 157

Query: 70  LSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETLYSG 127
           +S LP  H++ER         G  + Y +   R LK D++  +P   + VP V + +Y G
Sbjct: 158 ISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTVFVGVPRVLDRIYKG 217

Query: 128 IQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARII 187
           I  ++      +R +       +FAY  +K       L R     S              
Sbjct: 218 ILAKVNAKGGLKRTL------FNFAY-NYKL----AALRRGHGYAS-------------- 252

Query: 188 CAILWPLHLLAEKLVYKKIQSAIGISKAG-----VSGGGSLPMHIDLFYEAI-GVKVQVG 241
                    L +KLV+KKI++A+G    G     +SGG  L      F     G  V  G
Sbjct: 253 --------PLWDKLVFKKIKAALG----GRVRLMLSGGAPLSPDTQEFLRVALGCPVLQG 300

Query: 242 YGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRGSQV 299
           YGLTE+        P     G VG P+   EIK+VD             +G + +RG  V
Sbjct: 301 YGLTETCAGGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNV 360

Query: 300 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 359
            +GY+KNP  T +A DEDGW +TGDIG   P           G L +  R K+   LS G
Sbjct: 361 FKGYYKNPEKTAEAFDEDGWFHTGDIGEWLP----------DGTLKIIDRKKNLFKLSQG 410

Query: 360 ENVEPLELEEAALRSSLIRQIVVIG-QDQRRPGAIIVPDKEEVLMAAKRLSIVHADASEL 418
           E V   +LE     S L+ QI V G   +    AI+VPD++ +   A        D  EL
Sbjct: 411 EYVALEKLENIYKSSPLVDQICVYGDSLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEEL 470

Query: 419 -SKEKTISLLYGELRKWTSKC---SF-QIGPIHVVDEPFTV 454
            + +K    +  +L +   +     F  +  IH+  EPFT 
Sbjct: 471 CNNKKLKKAILKDLNEIGKENGLKGFEIVKAIHLTPEPFTP 511

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  183 bits (466), Expect = 3e-52
 Identities = 119/446 (26%), Positives = 183/446 (41%), Gaps = 104/446 (23%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA-- 82
           +D+AT VYTSGTTG PKGVML+        +   +I+     D+ LS LP  H+ ER   
Sbjct: 137 EDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIV 196

Query: 83  ------CGYFI-FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTS 135
                  G  + F   ++   T       DLQR +P    SVP     L++  Q+ I   
Sbjct: 197 EGGSLYSGAEVFFVESLD---TFAA----DLQRARPTVFFSVP----RLWTKFQQGILAK 245

Query: 136 SAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLH 195
               +                        L    K P                       
Sbjct: 246 LPPEK------------------------LNLLLKIP----------------------- 258

Query: 196 LLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYEAIGVKVQVGYGLTESSPVIAA 253
            +   LV KKI   +G+ +A ++G G+ PM   L  +Y  +G+ +  GYG+TE+      
Sbjct: 259 -ILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTL 317

Query: 254 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 313
             P    +G+VG PI   E+KI  +E  E+L         +R   +M GY+K+P  T +A
Sbjct: 318 NYPGDRRIGTVGKPIPGVELKI--SEDGEIL---------IRSPGLMSGYYKDPEKTAEA 366

Query: 314 LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 373
             EDGWL+TGD G I             G L + GR K+    S G+ V P  +E     
Sbjct: 367 FTEDGWLHTGDKGEIDED----------GFLKITGRVKELFKTSKGKYVAPAPIENLLSA 416

Query: 374 SSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK 433
           +  + Q+ V+G    +P A++V  +    +  + +        E S ++T++ +  EL  
Sbjct: 417 NPHVEQVCVVGSGLPQPVALVVLSEAADPLEREEV--------EESLQQTLAKVNSELES 468

Query: 434 WTSKCSFQIGPIHVVDEPFTVNFLCL 459
                  ++  + VV E +TV    L
Sbjct: 469 HE-----RLSALVVVKEAWTVENGLL 489

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  178 bits (454), Expect = 1e-49
 Identities = 139/459 (30%), Positives = 202/459 (44%), Gaps = 89/459 (19%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG 84
           +D+AT  YTSGTTG PKGV+LTH NL+  +            D  +S LP  H+YER   
Sbjct: 221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQ 280

Query: 85  YFIFSRGIELMYTAVRNLK--DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVV 142
             +   G+ + +    NLK  DDL   +P    SVP +Y  +Y GI   +  S      +
Sbjct: 281 IVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESG----GL 336

Query: 143 ARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLV 202
              L     AY A K+  E      N K PS                 +W      ++LV
Sbjct: 337 KERLFNA--AYNAKKQALE------NGKNPS----------------PMW------DRLV 366

Query: 203 YKKIQSAIGISKAGVSGGGSLPMHIDL--FYE-AIGVKVQVGYGLTESSPVIAARRPTCN 259
           + KI++ +G  +      G+ P+  D+  F     G +V  GYG+TE+S VI+      N
Sbjct: 367 FNKIKAKLG-GRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDN 425

Query: 260 VLGSVGHPINHTEIKIVDAE----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD 315
           + G VG P    E+K+VD      T+E  P   +G + VRG  + +GY+K+   T++ +D
Sbjct: 426 LSGHVGSPNPACEVKLVDVPEMNYTSEDQPY-PRGEICVRGPIIFKGYYKDEVQTREVID 484

Query: 316 EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS 375
           EDGWL+TGDIG   P          GG L +  R K+   L+ GE + P ++E    +  
Sbjct: 485 EDGWLHTGDIGLWLP----------GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCK 534

Query: 376 LIRQIVVIGQDQRRPG--AIIVPDKEEVLM--AAKR----------------LSIVHADA 415
            + Q  V G D       A++V D  EVL   AA                   + V AD 
Sbjct: 535 FVAQCFVYG-DSLNSSLVAVVVVD-PEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADM 592

Query: 416 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV 454
             + +E        +LR +          + +V EPFTV
Sbjct: 593 DAVGRE-------AQLRGFE-----FAKAVTLVPEPFTV 619

Length = 651

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  152 bits (385), Expect = 4e-40
 Identities = 121/396 (30%), Positives = 192/396 (48%), Gaps = 59/396 (14%)

Query: 26  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK------FLSMLPPWHVY 79
           DI T +YTSGT+G+PKGV+LTH+ +   +R + D+   +  DK      +LS LP  H+ 
Sbjct: 221 DICTIMYTSGTSGDPKGVVLTHEAVATFVRGV-DLFMEQFEDKMTHDDVYLSFLPLAHIL 279

Query: 80  ERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSA 137
           +R    + F +G  + Y    +  L+DDL   +P  +  VP V+E ++ GIQK +   + 
Sbjct: 280 DRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNP 339

Query: 138 ARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLL 197
            RR++  AL +   A+    R Y       + K+ S                   P   +
Sbjct: 340 RRRLIFNALYKYKLAW--MNRGY-------SHKKAS-------------------P---M 368

Query: 198 AEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQV-GYGLTES-SPVIAAR 254
           A+ L ++K+++ +G   +  +SGG  L   I+ F         V GYGLTE+  P     
Sbjct: 369 ADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGF 428

Query: 255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQ 312
                +LG+VG P  + E+++ +       P G   +G + VRG  +  GY+KNP  T++
Sbjct: 429 PDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEE 488

Query: 313 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
            + +DGW +TGDIG I P+          GVL +  R K+ I LS GE V    LE    
Sbjct: 489 VM-KDGWFHTGDIGEILPN----------GVLKIIDRKKNLIKLSQGEYVALEYLENVYG 537

Query: 373 RSSLIRQIVVIGQDQRRPG--AIIVPDKEEVLMAAK 406
           ++ ++  I V G D  +    A++VP++E     AK
Sbjct: 538 QNPIVEDIWVYG-DSFKSMLVAVVVPNEENTNKWAK 572

Length = 660

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  145 bits (369), Expect = 1e-39
 Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 51/256 (19%)

Query: 214 KAGVSGGGSLPM-HIDLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNV---LGSVGHPI 268
           + G+SGG  +P   +    E   +  +  GYG+TE+S V              G+VG P+
Sbjct: 120 RTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPL 179

Query: 269 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
              E+KIVD +  EV P G  G + VRG  VM+GY+ +P AT +A+D DGWL+TGD+G++
Sbjct: 180 PGVEVKIVDPDGGEV-PPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYM 238

Query: 329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 388
                        G L + GR KD I +  GEN+ P E+EEA L    + +  V+G    
Sbjct: 239 DED----------GYLRIVGRIKDMI-IRGGENIYPAEIEEALLTHPAVAEAAVVG---- 283

Query: 389 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 444
                 VPD+   EV+ A   L       + L++E        EL  +   C  ++    
Sbjct: 284 ------VPDERLGEVVAAFVVL----KPGATLTEE--------ELIAF---CRGRLARFK 322

Query: 445 ----IHVVDE-PFTVN 455
               +  VDE P T +
Sbjct: 323 VPRYVRFVDELPRTAS 338

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  148 bits (375), Expect = 9e-39
 Identities = 113/394 (28%), Positives = 181/394 (45%), Gaps = 67/394 (17%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS------LYDIVPAENGDKFLSMLPPWHV 78
            DI T +YTSGTTG PKGV+LT++ ++ ++ S      + D V  E  D + S LP  HV
Sbjct: 220 TDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEE-DSYFSYLPLAHV 278

Query: 79  YERACGYFIFSRGIELMY--TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSS 136
           Y++    +  S+G  + +    +R L +D+Q  +P     VP VY+ +Y+GI ++I +  
Sbjct: 279 YDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGG 338

Query: 137 AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHL 196
             R+ +        FAY  +K       L + +  P                        
Sbjct: 339 MLRKKL------FDFAYN-YKLGNLRKGLKQEEASP------------------------ 367

Query: 197 LAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGVKVQV-GYGLTES-SPVIAA 253
             ++LV+ KI+  +G   +  +SG   LP H++ F       V   GYGLTES      +
Sbjct: 368 RLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTS 427

Query: 254 RRPTCNVLGSVGHPINHTEIKIV-------DAETNEVLPAGSKGIVKVRGSQVMQGYFKN 306
                +++G+VG P+   E ++        DA ++  +P   +G + +RG+ +  GY K 
Sbjct: 428 IANVFSMVGTVGVPMTTIEARLESVPEMGYDALSD--VP---RGEICLRGNTLFSGYHKR 482

Query: 307 PSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE 366
              T++ L  DGW +TGDIG   P+          G + +  R K+   LS GE V    
Sbjct: 483 QDLTEEVL-IDGWFHTGDIGEWQPN----------GAMKIIDRKKNIFKLSQGEYVAVEN 531

Query: 367 LEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKE 399
           LE    R  LI  I V G   +    A++VPD++
Sbjct: 532 LENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQ 565

Length = 660

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  141 bits (356), Expect = 1e-36
 Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 214 KAGVSGGGSLPMHIDLFYEAIGVKVQV--GYGLTESSPVIAA--RRPTCNVLGSVGHPIN 269
           +  +SGG  LP  +   +E     + +  GYGLTE+SPV+            GSVG P+ 
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP 353

Query: 270 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 329
             E++IVD +  EVLP G  G + VRG  VM+GY+  P AT +A DEDGWL TGD+G++ 
Sbjct: 354 GVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVD 412

Query: 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD--- 386
                       G L + GR KD I+   GEN+ P E+E        + +  V+G     
Sbjct: 413 ED----------GYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDER 461

Query: 387 -QRRPGAIIVPDKEEVLMAAKR 407
              R  A++V            
Sbjct: 462 WGERVVAVVVLKPGGDAELTAE 483

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  135 bits (343), Expect = 4e-35
 Identities = 79/227 (34%), Positives = 108/227 (47%), Gaps = 49/227 (21%)

Query: 217 VSGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGHPIN 269
           +SGG  LP+   + F E  G  +  GYGLTE+SPV         R+P     GS+G P+ 
Sbjct: 248 ISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKP-----GSIGLPLP 302

Query: 270 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 329
            TE+KIVD E NE+ P G  G + VRG QVM+GY+  P  T + L  DGWL TGDIG++ 
Sbjct: 303 GTEVKIVDDEGNEL-PPGEVGELVVRGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMD 360

Query: 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 389
                       G   +  R KD I +  G NV P E+EE       + +  V+G     
Sbjct: 361 ED----------GYFYIVDRKKDMI-IVGGFNVYPREIEEVLYSHPAVLEAAVVG----- 404

Query: 390 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 434
                VPD    E + A     +V  + + L++E        EL  +
Sbjct: 405 -----VPDPYRGEAVKAF----VVLKEGASLTEE--------ELIAF 434

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  131 bits (331), Expect = 6e-34
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 217 VSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCN--VLGSVGHPINHTE 272
           +SGG  LP   +    E  G V +  GYG TE++ V  A  P       GS+G P+   E
Sbjct: 253 LSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVE 312

Query: 273 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN--TGDIGWIAP 330
           +K++D E   V P G  G + +RG  V +GY  +P  T +   EDGW    TGD+G    
Sbjct: 313 VKVLDEEGEPV-PPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDE 371

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 382
                      G L + GR  D + +  GE +EP E+E   L    + +  V
Sbjct: 372 D----------GYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  134 bits (339), Expect = 8e-34
 Identities = 123/436 (28%), Positives = 193/436 (44%), Gaps = 68/436 (15%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-ENGDKFLSMLPPWHVYERA 82
            +DIA  +YTSG+TG PKGVM+TH N++  +  +  +VP     D +L+ LP  H+ E A
Sbjct: 249 PNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELA 308

Query: 83  CGYFIFSRGIELMYTAVRNLKD-----------DLQRYQPHYMISVPLVYETLYSGIQKQ 131
               + + G  + Y +   L D           D    +P  M +VP + + +  G++K+
Sbjct: 309 AESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKK 368

Query: 132 IFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID--WLWARIICA 189
           +     A+  +A+ L  I     A+KR                 +A I+  W  A  +  
Sbjct: 369 V----DAKGGLAKKLFDI-----AYKR----------------RLAAIEGSWFGAWGLEK 403

Query: 190 ILWPLHLLAEKLVYKKIQSAIGISKAGV-SGGGSLPMHIDLFYE-AIGVKVQVGYGLTES 247
           +LW      + LV+KKI++ +G     + SGG  L      F    +G  +  GYGLTE+
Sbjct: 404 LLW------DALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTET 457

Query: 248 SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS---KGIVKVRGSQVMQGYF 304
                        +G VG P+    +K+V  E    L +     +G + + G  V  GYF
Sbjct: 458 CAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYF 517

Query: 305 KNPSATKQA--LDEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 360
           KN   T +   +DE G  W  TGDIG   P           G L +  R KD + L  GE
Sbjct: 518 KNQEKTDEVYKVDERGMRWFYTGDIGQFHPD----------GCLEIIDRKKDIVKLQHGE 567

Query: 361 NVEPLELEEAALRSSLIRQIVVIGQDQRRPG--AIIVPDKEEVLMAAKRLSIVHADASEL 418
            V  L   EAAL  S     +++  D       A++VP ++ +   AK+  I +++ +EL
Sbjct: 568 YVS-LGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAEL 626

Query: 419 -SKEKTISLLYGELRK 433
             KE+ +  +   L K
Sbjct: 627 CEKEEAVKEVQQSLSK 642

Length = 696

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  128 bits (323), Expect = 3e-33
 Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 37/238 (15%)

Query: 214 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHT 271
           +  +SGG  L    ++ F E  G  +  GYGLTE+S V +    +     G+VG P+   
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGV 178

Query: 272 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331
           E+++VD E    LP G  G + VRG  VM+GY+ NP  T  A  EDGW  TGD+G++   
Sbjct: 179 EVRVVDEEGKP-LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEE 237

Query: 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 391
                     G L + GR+KD I    GENV P E+E   L+   + +  V+G       
Sbjct: 238 ----------GYLYITGRSKDLIK-VGGENVYPAEVESVLLQHPAVAEAAVVG------- 279

Query: 392 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD 449
            +   D+ E ++A     +V    ++   E        EL+        ++ P  V  
Sbjct: 280 -VPDEDRGERIVAF----VVLRPGADALAE--------ELKAH---LRERLAPYKVPR 321

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  126 bits (320), Expect = 7e-33
 Identities = 79/250 (31%), Positives = 112/250 (44%), Gaps = 53/250 (21%)

Query: 214 KAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPI 268
           +  + G    PM  +L     E  G     GYG+TE+ P      P   +  LGSVG P+
Sbjct: 118 RLIIYGAA--PMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPV 175

Query: 269 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
              E++IVD +  E+ P G  G + VRG  VM GY+  P AT +AL  DGWL+TGD+G++
Sbjct: 176 PGVEVRIVDEDGREL-PPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYL 233

Query: 329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 388
                        G L +  R KD I+ S GEN+ P E+E   L    +  + VIG    
Sbjct: 234 DED----------GYLYIVDRKKDMII-SGGENIYPAEVENVLLAHPAVADVAVIG---- 278

Query: 389 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 444
                 VPD+E  E ++A     +V    + L  E        EL  +   C  ++    
Sbjct: 279 ------VPDEEWGEAVVAV----VVLRPGATLDAE--------ELIAF---CRERLAGYK 317

Query: 445 ----IHVVDE 450
               +  VDE
Sbjct: 318 VPKSVEFVDE 327

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  131 bits (331), Expect = 1e-32
 Identities = 112/399 (28%), Positives = 167/399 (41%), Gaps = 64/399 (16%)

Query: 15  KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD--IVPAENGDKFLSM 72
            +YK +    D I + VYTSGT+G PKGVML++KNL + +  L    I    N    LS 
Sbjct: 294 TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSY 353

Query: 73  LPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETLYSGIQK 130
           LP  H+YER   Y  F  G  +   +  +     D+   + + +  VP V+  +Y+ I  
Sbjct: 354 LPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMT 413

Query: 131 QIFTSSAARRVVARALI--RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIIC 188
           +I      +R + + ++  R S     F +  EG  +T                      
Sbjct: 414 EINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEG--ITH--------------------- 450

Query: 189 AILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSL-PMHIDLFYEAIGVKVQVGYGLTE 246
                        +  KI+  +  + +  ++GGG L P   +     + V    GYGLTE
Sbjct: 451 -------------ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTE 497

Query: 247 SS-PVIAARRPTCNVLGSVGHPIN-HTEIKIVDAET---NEVLPAGSKGIVKVRGSQVMQ 301
           ++ P+        N   S+G PI+ +T+ K+   ET    + LP   KG + ++   +  
Sbjct: 498 TTGPIFVQHADDNNTE-SIGGPISPNTKYKVRTWETYKATDTLP---KGELLIKSDSIFS 553

Query: 302 GYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 361
           GYF     TK A  EDG+  TGDI  I  +          G L    R+K  + LS GE 
Sbjct: 554 GYFLEKEQTKNAFTEDGYFKTGDIVQINKN----------GSLTFLDRSKGLVKLSQGEY 603

Query: 362 VEPLELEEAALRSSLIRQIVVIGQDQRR-PGAIIVPDKE 399
           +E   L     + S I   VV G D    P AII  DK 
Sbjct: 604 IETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKY 642

Length = 746

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  130 bits (328), Expect = 1e-32
 Identities = 93/387 (24%), Positives = 166/387 (42%), Gaps = 69/387 (17%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPPW 76
           E+   +   T +YTSGTTG PKGVML+H N+    ++     D+      +  +S LP  
Sbjct: 145 ESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRT-VGQESVVSYLPLS 203

Query: 77  HVYER-----------ACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLY 125
           H+  +            C YF  ++   L  T V+ L++     +P   + VP V+E + 
Sbjct: 204 HIAAQILDIWLPISVGGCVYF--AQPDALKGTLVKTLRE----VRPTAFMGVPRVWEKIQ 257

Query: 126 SGIQKQIFTSSAARRVVARALIRISF-AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA 184
             ++     S+  +R +A     +                +      P            
Sbjct: 258 ERMKAVGAKSTGLKRKIASWAKGVGLETNLK--------LMGGESPPPMC---------- 299

Query: 185 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYEAIGVKVQVGY 242
                       LA+KLV+KK++ A+G+ +      G+ P+  +   F+ ++ + +   Y
Sbjct: 300 ----------FRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELY 349

Query: 243 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 302
           G++E+S       P    L S G  +   E KI + + + +      G + + G  V  G
Sbjct: 350 GMSETSGPHTVSNPQNYRLLSCGKALPGCETKIHNPDADGI------GEICIWGRHVFMG 403

Query: 303 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV 362
           Y      T++A+DEDGWL++GD+G++             G L + GR K+ I+ + GENV
Sbjct: 404 YLNMEEKTEEAIDEDGWLHSGDLGFLDDD----------GFLYITGRIKELIITAGGENV 453

Query: 363 EPLELEEAA-LRSSLIRQIVVIGQDQR 388
            P+ +EEA      +I   +++G  ++
Sbjct: 454 PPVPIEEAVKKELPIISNAMLVGDKRK 480

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  126 bits (319), Expect = 2e-31
 Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 27/222 (12%)

Query: 196 LLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAAR 254
           LL     Y    S++   +  + GG +LP   +  F E  G+ +  GYG+TE+SPV++  
Sbjct: 269 LLKAPRAYFVDFSSL---RLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVL 325

Query: 255 RPTCNVLG------SVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQGYFKNP 307
            P   + G      S G P+   E +IVD + +E+ P  G  G + VRG  +MQGY+  P
Sbjct: 326 PPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRP 385

Query: 308 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL 367
            AT + +D  GWL+TGD+G+I             G L +  R KD I+ S GEN+ P EL
Sbjct: 386 EATAETID-GGWLHTGDVGYIDED----------GYLYITDRIKDVII-SGGENIYPREL 433

Query: 368 EEAALRSSLIRQIVVIGQ-DQR---RPGAIIVPDKEEVLMAA 405
           E+A      + ++ VIG  D++   RP A++V      L A 
Sbjct: 434 EDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAK 475

Length = 521

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  127 bits (319), Expect = 2e-31
 Identities = 120/456 (26%), Positives = 198/456 (43%), Gaps = 59/456 (12%)

Query: 14  GKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG-----DK 68
           GK Y        DI T +YTSGTTG+PKGVM+++++++  I  +  ++ + N      D 
Sbjct: 212 GKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDV 271

Query: 69  FLSMLPPWHVYERACGYFIFSRG--IELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYS 126
           +LS LP  H+++R         G  I      V+ L +DL   +P    +VP V + +YS
Sbjct: 272 YLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYS 331

Query: 127 GIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARI 186
           G+QK++      ++ V  +     F                 +K  S++ A         
Sbjct: 332 GLQKKLSDGGFLKKFVFDSAFSYKFGNM--------------KKGQSHVEA--------- 368

Query: 187 ICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGL 244
                     L +KLV+ K++  +G + +  +SG   L  H++ F   +    V  GYGL
Sbjct: 369 --------SPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGL 420

Query: 245 TESSPVIAARRP-TCNVLGSVGHPINHTEIKI--VDAETNEVLPAGSKGIVKVRGSQVMQ 301
           TES        P   ++LG+VG P+ + +I++  V     + L +  +G + +RG  +  
Sbjct: 421 TESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFS 480

Query: 302 GYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 361
           GY+K    TK+ L  DGWL+TGD+G   P+          G + +  R K+   LS GE 
Sbjct: 481 GYYKREDLTKEVLI-DGWLHTGDVGEWQPN----------GSMKIIDRKKNIFKLSQGEY 529

Query: 362 VEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK- 420
           V    +E        +  + V G         I    +++L      + V  D + L + 
Sbjct: 530 VAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQN 589

Query: 421 EKTISLLYGELRKWTSKCSFQ----IGPIHVVDEPF 452
           EK    + GEL K   +   +    I  IH+   PF
Sbjct: 590 EKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPF 625

Length = 666

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  126 bits (318), Expect = 2e-31
 Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 48/229 (20%)

Query: 238 VQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 294
           V + YG+TE+SPV    R    +   + +VG  + H E+KIVD ET E +P G +G +  
Sbjct: 344 VTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCT 403

Query: 295 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 354
           RG  VM+GY+ +P  T +A+D DGW++TGD+  +             G + + GR KD I
Sbjct: 404 RGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEE----------GYVNIVGRIKDMI 453

Query: 355 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 412
           +   GEN+ P E+EE       I+ + V+G          VPD++  E + A   L    
Sbjct: 454 I-RGGENIYPREIEEFLYTHPKIQDVQVVG----------VPDEKYGEEVCAWIIL---R 499

Query: 413 ADASELSKEKTISLLYGELRKWTSKCSFQIG----P--IHVVDE-PFTV 454
             A  L++E        ++R +   C  +I     P  I  VDE P TV
Sbjct: 500 PGA-TLTEE--------DVRDF---CRGKIAHYKIPRYIRFVDEFPMTV 536

Length = 559

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  122 bits (309), Expect = 7e-31
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 27/173 (15%)

Query: 235 GVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 292
           G+ +   YG+TE++  +A  +P      LGSVG P+   E++IV+ +  E+L        
Sbjct: 213 GIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRIVNPQDGEIL-------- 264

Query: 293 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 352
            VRG  +  GY      T   LDEDGW +TGD+G++    + G        L + GR  D
Sbjct: 265 -VRGPSLFLGYLPQGGLT-PPLDEDGWFHTGDLGYL---DAEGY-------LYVLGRRDD 312

Query: 353 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV 401
            I+ S GEN+ P E+E   L+   + +  V+G        RP A +VP+ + V
Sbjct: 313 LII-SGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPV 364

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  124 bits (314), Expect = 1e-30
 Identities = 99/346 (28%), Positives = 157/346 (45%), Gaps = 78/346 (22%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-----IVPAENGDKFLSMLPPWHVY 79
           DD+A  +YTSGTTG+PKGVM TH +L   I +L D     I P E  + + S LP  H+ 
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIM 323

Query: 80  ERACGYFIFSRGIELMYTAVRNLKD-------DLQRYQPHYMISVPLVYETLYSGIQKQI 132
           E        +RG  + + + R L D       DL  ++P ++I VP +++T+   ++ ++
Sbjct: 324 EFGVTNIFLARGALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKL 383

Query: 133 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID------WLWARI 186
               + +R V             F   Y+           S L AL +      W     
Sbjct: 384 PPVGSLKRRV-------------FDHAYQ-----------SRLRALKEGKDTPYW----- 414

Query: 187 ICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGL 244
                        + V+   ++ +G   +A +SGGG L      F   + G+ +Q G+GL
Sbjct: 415 ------------NEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFGMVIQ-GWGL 461

Query: 245 TESSPVIAARRP---TCNVLGSVGHPINHTEIKIVDAE----TNEVLPAGSKGIVKVRGS 297
           TE+      +R      N   +VG  +   E+K++D E    T+   P   +G + +RG 
Sbjct: 462 TETVCCGGIQRTGDLEPN---AVGQLLKGVEMKLLDTEEYKHTDTPEP---RGEILLRGP 515

Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGV 343
            + +GY+K    T++ LDEDGW +TGD+G IA +   G  R  G V
Sbjct: 516 FLFKGYYKQEELTREVLDEDGWFHTGDVGSIAAN---GTLRIIGRV 558

Length = 700

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  122 bits (309), Expect = 3e-30
 Identities = 77/215 (35%), Positives = 100/215 (46%), Gaps = 31/215 (14%)

Query: 217 VSGGGSLPM-HIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTE 272
            SG   L     + F     GV++  GYG+TESSPV             GSVG  + + E
Sbjct: 281 GSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVE 340

Query: 273 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 332
            KIVD ET E LP    G + VRG QVM+GY  NP AT + +D+DGWL+TGD+G+     
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDE-- 398

Query: 333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 392
                    G L +  R K+ I    G  V P ELE   L    I    VI         
Sbjct: 399 --------DGYLFIVDRLKELIKYK-GFQVAPAELEALLLSHPEIADAAVIP-------- 441

Query: 393 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTIS 425
              PD+E  E+ MA     +V    SELS+++ + 
Sbjct: 442 --YPDEEAGEIPMAF----VVRQPGSELSEDEVMQ 470

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  121 bits (307), Expect = 5e-30
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 29/217 (13%)

Query: 214 KAGVSGGGSLPMH-IDLFYEAIGVK-VQVGYGLTESSPVIA---ARRPTCNVLGSVGHPI 268
           +  V+G  S+P+  ++ F   +GV  V  GYGL+E+S V            V G++G  I
Sbjct: 284 RLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI 343

Query: 269 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
              E KIV+    EV P G  G + VRG  VM+GY+ +P AT  A+D DGWL+TGD+G +
Sbjct: 344 AGVENKIVNELGEEV-PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRL 402

Query: 329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 388
                 G        L +  R KD   +  G NV P E+EE       + +  VIG    
Sbjct: 403 DE---EGY-------LYIVDRKKDMF-IVGGFNVYPAEVEEVLYEHPAVAEAAVIG---- 447

Query: 389 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 425
                 VPD  E L    +  +V    +EL++E+ I+
Sbjct: 448 ------VPD--ERLGEVGKAYVVLKPGAELTEEELIA 476

Length = 513

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  119 bits (301), Expect = 3e-29
 Identities = 100/386 (25%), Positives = 146/386 (37%), Gaps = 89/386 (23%)

Query: 21  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE 80
           T   D++A  ++TSGT G PKGVMLTH N+L   R+    +     D F+   P  H   
Sbjct: 183 TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH--- 239

Query: 81  RACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 140
            A G+                          H + +  L+       +   IFT  A   
Sbjct: 240 -ATGFL-------------------------HGVTAPFLIGARS---VLLDIFTPDACLA 270

Query: 141 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 200
           ++ +         T F  IY+   L   +KQP+ L AL  +L                  
Sbjct: 271 LLEQQRCTCMLGATPF--IYDLLNLL--EKQPADLSALRFFL------------------ 308

Query: 201 LVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSP--VIAARRPTC 258
                             GG ++P  +    +  G+K+   YG TESSP  V+    P  
Sbjct: 309 -----------------CGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLS 351

Query: 259 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 318
             + + G+     EIK+VD     + P G +G    RG  V  GY   P  T +ALDE+G
Sbjct: 352 RFMHTDGYAAAGVEIKVVDEARKTL-PPGCEGEEASRGPNVFMGYLDEPELTARALDEEG 410

Query: 319 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 378
           W  +GD+  +      G  +       + GR KD IV   GEN+   E+E+  L+   I 
Sbjct: 411 WYYSGDLCRM---DEAGYIK-------ITGRKKDIIV-RGGENISSREVEDILLQHPKIH 459

Query: 379 QIVVIGQDQRRPG----AIIVPDKEE 400
              V+     R G    A +V     
Sbjct: 460 DACVVAMPDERLGERSCAYVVLKAPH 485

Length = 547

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  118 bits (298), Expect = 3e-29
 Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 24/173 (13%)

Query: 242 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 296
           YG+TE     S+P+   RRP     G+VG P+   E++IVD +  E L AG  G ++VRG
Sbjct: 238 YGMTETGMALSNPLDGERRP-----GTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRG 292

Query: 297 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 356
             V   Y+  P AT +A  EDGW  TGD+G               G   + GR  D I+ 
Sbjct: 293 PNVFSEYWNKPEATAEAFTEDGWFKTGDVGV----------VDEDGYYRILGRKSDDIIK 342

Query: 357 STGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA 405
           S G  V  LE+EEA L    + ++ VIG           A++VP+    L  A
Sbjct: 343 SGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLA 395

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  115 bits (290), Expect = 1e-28
 Identities = 63/189 (33%), Positives = 88/189 (46%), Gaps = 21/189 (11%)

Query: 218 SGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAAR--RPTCNVLGSVGHPINHTEIK 274
           S    LP   +D   +  GV V   YG+TE++  IA+    P     GSVG P    E+ 
Sbjct: 125 SASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAG-VEVA 183

Query: 275 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 334
           I+D +    LP G +G + +RG  V  GY  NP A ++A   DGW  TGD+G++      
Sbjct: 184 ILD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAF-RDGWFRTGDLGYLDED--- 238

Query: 335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR---RP 390
                  G L L GR K+ I    GE + P E+EE  LR   + + VV G  D+      
Sbjct: 239 -------GYLFLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEV 290

Query: 391 GAIIVPDKE 399
            A +V   +
Sbjct: 291 AAAVVLRAD 299

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  116 bits (293), Expect = 3e-28
 Identities = 70/208 (33%), Positives = 93/208 (44%), Gaps = 29/208 (13%)

Query: 228 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 287
           +LF E  G+++  GYG TE SPVI+   P  N  G+VG P+   E++IV  ET+E LP G
Sbjct: 277 ELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIG 336

Query: 288 SKGIVKVRGSQVMQGYFKNPSATK-QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVL 346
             G++ VRG  VM GY  N   T    +  DGW +TGDIG I             G L +
Sbjct: 337 EGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDED----------GFLTI 386

Query: 347 EGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ---IVVIGQDQRRPGAIIV-------P 396
            GR K    +  GE V  L   E  L   L        V   D+++ G  IV        
Sbjct: 387 VGRLKRFAKIG-GEMV-SLTAVEELLSEILPEDSLHAAVEVPDEKK-GEKIVLLTTTEDL 443

Query: 397 DKEEVLMAAKRLSIVHADASELSKEKTI 424
           D EE+    +      A    L+  + I
Sbjct: 444 DPEELNAILR-----EAGLPNLAVPRKI 466

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  116 bits (291), Expect = 8e-28
 Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 49/229 (21%)

Query: 238 VQVGYGLTESSPVI---AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 294
           VQ+ YG+TE+SPV     A       + +VG    H E+K+VD +    +P G  G +  
Sbjct: 346 VQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCT 404

Query: 295 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 354
           RG  VM+GY+ NP AT +++DEDGW++TGD+  +             G + + GR+KD I
Sbjct: 405 RGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQ----------GYVRIVGRSKDMI 454

Query: 355 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 412
           +   GEN+ P E+EE       +  + V G          VPD++  E ++A  RL   H
Sbjct: 455 I-RGGENIYPREIEEFLFTHPAVADVQVFG----------VPDEKYGEEIVAWVRLHPGH 503

Query: 413 ADASELSKEKTISLLYGELRKWTSKCSFQIG----PIHV--VDE-PFTV 454
           A + E            ELR++   C  +I     P +   VDE P TV
Sbjct: 504 AASEE------------ELREF---CKARIAHFKVPRYFRFVDEFPMTV 537

Length = 558

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  113 bits (286), Expect = 1e-27
 Identities = 57/172 (33%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 217 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVIAARRPTCNVLGSVGHPINHTEIKI 275
           V G          F E  GVK+  GYG+TE+  P+IA   P     GS G P    E++I
Sbjct: 201 VFGAPLPAAIWPAFEERFGVKLVEGYGMTETGVPIIAPGDP--APPGSCGRPRPGVEVRI 258

Query: 276 VDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 332
           VD +  EV P G  G + VR  +   + +GY+  P AT +A   +GW +TGD G      
Sbjct: 259 VDEDGREV-PPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDED- 315

Query: 333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 384
                    G L    R KD I    GEN+   E+E A L    + +  V+ 
Sbjct: 316 ---------GFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA 357

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  113 bits (284), Expect = 4e-27
 Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 17/194 (8%)

Query: 218 SGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 275
           SG   L   + +   +      ++ GYG+TE+ P      P     GSVG  + + E KI
Sbjct: 270 SGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNVEAKI 329

Query: 276 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 335
           VD +  + L    +G + V+G Q+M+GY  NP ATK+ +DEDGWL+TGDIG+        
Sbjct: 330 VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDE----- 384

Query: 336 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPG 391
                 G   +  R K+ I    G  V P ELE   L    +    VIG         P 
Sbjct: 385 -----DGNFYIVDRKKELIKYK-GYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPR 438

Query: 392 AIIVPDKEEVLMAA 405
           A +V      L   
Sbjct: 439 AYVVLKPGSKLTEQ 452

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  112 bits (283), Expect = 9e-27
 Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 17/184 (9%)

Query: 214 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 272
           K  +SGG +L +     ++ + G  +  GYG+TE+SPV++        +G++G P+  T 
Sbjct: 329 KLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTL 388

Query: 273 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 332
            K++D + NE LP G  G + V+G QVM+GY++ P AT + LD DGWL TGDI  I    
Sbjct: 389 CKVIDDDGNE-LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQED- 446

Query: 333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE--AALRSSLIRQIVVIGQDQRRP 390
                    G + +  R KD I++S G NV P ELE+  AAL   L  Q   IG    + 
Sbjct: 447 ---------GYMRIVDRKKDMILVS-GFNVYPNELEDVLAALPGVL--QCAAIGVPDEKS 494

Query: 391 GAII 394
           G  I
Sbjct: 495 GEAI 498

Length = 562

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  110 bits (278), Expect = 4e-26
 Identities = 76/236 (32%), Positives = 112/236 (47%), Gaps = 46/236 (19%)

Query: 202 VYKKIQSAI---GISKAGV----SGGGSLPMHIDLFYEAI--GVKVQVGYGLTESSPVIA 252
           +Y+KI  A    G+  +GV    SG  +LP+     +E +  G+ V+ GYGLTE+SP+I 
Sbjct: 320 LYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVE-GYGLTETSPIIV 378

Query: 253 A------RRPTCNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFK 305
                  RRP     G VG P   TE++IVD E  +E +P G +G + VRG QV +GY+ 
Sbjct: 379 GNPMSDDRRP-----GYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWN 433

Query: 306 NPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 365
            P  T ++   DGW  TGD+  +             G + +  R K+ I+ + G NV P 
Sbjct: 434 RPEETAKSF-LDGWFRTGDVVVMEED----------GFIRIVDRIKELII-TGGFNVYPA 481

Query: 366 ELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKE 421
           E+EE       +    V+G     P      D  E ++AA    +V    + L  E
Sbjct: 482 EVEEVLREHPGVEDAAVVG----LPR----EDGSEEVVAA----VVLEPGAALDPE 525

Length = 573

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  110 bits (276), Expect = 7e-26
 Identities = 67/177 (37%), Positives = 97/177 (54%), Gaps = 16/177 (9%)

Query: 218 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTEIK 274
           SGG +L       +E + G  +  GYGLTE+SPV A+  P   +  LG+VG P+  T +K
Sbjct: 340 SGGTALVKATAERWEQLTGCTIVEGYGLTETSPV-ASTNPYGELARLGTVGIPVPGTALK 398

Query: 275 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 334
           ++D + NE LP G +G + ++G QVM+GY++ P AT +ALD +GW  TGDI  I P    
Sbjct: 399 VIDDDGNE-LPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPD--- 454

Query: 335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 391
                  G + +  R KD I++S G NV P E+E+  +    +     IG    R G
Sbjct: 455 -------GFVRIVDRKKDLIIVS-GFNVYPNEIEDVVMAHPKVANCAAIGVPDERSG 503

Length = 562

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  109 bits (274), Expect = 1e-25
 Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 22/177 (12%)

Query: 214 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAA-----RRPTCNVLGSVGHP 267
           +A +SG   LP+ +   +E + G K+  GYGLTESSPV  +     +R    V GS+G P
Sbjct: 326 RACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKR----VPGSIGVP 381

Query: 268 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
              TE  I+  ET E LP G  G + V+G Q+M+GY+  P  T   L +DGWL+TGD+G+
Sbjct: 382 WPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGY 440

Query: 328 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 384
           +             G   ++ R KD IV S G NV P E+EE       ++++V IG
Sbjct: 441 MDED----------GFFYVKDRKKDMIVAS-GFNVYPREVEEVLYEHEKVQEVVTIG 486

Length = 563

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  105 bits (265), Expect = 1e-24
 Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 36/221 (16%)

Query: 217 VSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN---VLGSVGHPINHTE 272
           + GG  +P        EA+G KV   YG+TE  P++    P         + G P+   E
Sbjct: 214 LCGGAPVPRELARRAAEALGAKVVRAYGMTEV-PLVTVGTPDDPDDKRAATDGRPVPGVE 272

Query: 273 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 332
           ++IVD + N+V P G +G ++VRG Q+  GY   P  T+   D DGW  TGD+G +    
Sbjct: 273 VRIVDDDGNDV-PPGEEGELQVRGPQLFLGYLDPPDNTEAFTD-DGWFRTGDLGRLDAD- 329

Query: 333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR--- 388
                    G L + GR KD I+   GEN+   E+E+  LR   + ++ V+   D+R   
Sbjct: 330 ---------GYLRITGRKKDIIIRG-GENISAREIEDLLLRHPAVAEVAVVAMPDERLGE 379

Query: 389 RPGAIIVP------DKEEVLMAAKRLSIVHADASELSKEKT 423
           R  A++VP         E+          H  A  L+K+K 
Sbjct: 380 RVCAVVVPAPGASLTLAELTE--------HLAAQGLAKQKW 412

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  103 bits (260), Expect = 7e-24
 Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 213 SKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPI 268
           S   +S GG + +     + + +  G  +  GYGLTE SP+++          GS+G P+
Sbjct: 325 SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPV 384

Query: 269 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
             TEIK+VD + NEV P G  G + V+G QVM GY++ P AT + + +DGWL TGDI  +
Sbjct: 385 PSTEIKLVDDDGNEV-PPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVM 442

Query: 329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 385
                        G L +  R KD I++S G NV P E+E+  +    + ++  +G 
Sbjct: 443 DEE----------GFLRIVDRKKDMILVS-GFNVYPNEIEDVVMLHPKVLEVAAVGV 488

Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  102 bits (257), Expect = 2e-23
 Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 228 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 287
             F         +   LT      AA  P       +G PI    I+IVD E   +LP G
Sbjct: 340 RGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGALLPEG 398

Query: 288 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLE 347
             G ++VRG  V  GY++NP A  +A  EDGW  TGD+G++  H          G L + 
Sbjct: 399 EVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL--HD---------GRLTIT 447

Query: 348 GRAKDTIVLSTGENVEPLELEEA 370
           GR KD I+++ G N    E+E A
Sbjct: 448 GREKDMIIIN-GVNYYNHEIEAA 469

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 99.7 bits (249), Expect = 8e-23
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 27/201 (13%)

Query: 212 ISKAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSP---VIAARRPTCNVLGSVG 265
           +S   V GGG   +   +        G+  + GYGLTE+          RP       +G
Sbjct: 198 LSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPK---PQCLG 254

Query: 266 HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNT 322
            P+  T+ +++D ET E LP G +G + VRG QV +GY+  P AT ++    D   +  T
Sbjct: 255 IPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRT 314

Query: 323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 382
           GD+G+I             G      R K  I +S G  V P E+E    +   + ++ V
Sbjct: 315 GDLGYIDEE----------GYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCV 363

Query: 383 IGQ-DQRR---PGAIIVPDKE 399
           IG+ D RR     A +V   +
Sbjct: 364 IGRPDPRRGEVVKAFVVLKPD 384

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  100 bits (251), Expect = 1e-22
 Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 34/208 (16%)

Query: 217 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT-----------CNVLGSVG 265
           V GG +LP  +    E  GV+V   +G+TE+SP+    R               +    G
Sbjct: 285 VVGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQG 344

Query: 266 HPINHTEIKIVDAETNEVLPAG-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 324
            P+   E++IVD E NE+   G + G + VRG  V   Y+K+P  T+  L  DGW  TGD
Sbjct: 345 RPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTE-ELTRDGWFRTGD 403

Query: 325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 384
           +  I             G + +  RAKD I  S GE +  +ELE A +    + +  V+G
Sbjct: 404 VAVIDED----------GYIQITDRAKDVIK-SGGEWISSVELENALMAHPAVAEAAVVG 452

Query: 385 QD----QRRPGAIIVP------DKEEVL 402
                   RP A++V        +EE+L
Sbjct: 453 VPHEKWGERPLAVVVLKPGAKVTEEELL 480

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 99.6 bits (249), Expect = 2e-22
 Identities = 53/168 (31%), Positives = 75/168 (44%), Gaps = 28/168 (16%)

Query: 263 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ------ALDE 316
           S G P+   E++IVD ET   LP G  G + VRG  V  GY+  P AT +      A DE
Sbjct: 356 SCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDE 415

Query: 317 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 376
            GWL TGD+G++             G L + GR KD I++  G N  P ++E    R+  
Sbjct: 416 GGWLRTGDLGFLH-----------DGELYVTGRLKDLIIIR-GRNHYPQDIEATVERAHP 463

Query: 377 IRQIVVIGQDQRRPGAIIVPDKEE---VLMAAKRLSIVHADASELSKE 421
             +            A  V    E   V++A  R   + AD + L++ 
Sbjct: 464 ALRPG-------AAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEA 504

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 99.3 bits (248), Expect = 2e-22
 Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 21/138 (15%)

Query: 263 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 322
            VG PI+  EI+IVD +  EVLP  + G ++++G  V  GY+ NP ATK+++  DGWL T
Sbjct: 315 EVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKT 373

Query: 323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 382
           GD+G++             G LV+ GRAKD I+++ G+N  P ++E  A          V
Sbjct: 374 GDLGFLR-----------NGRLVITGRAKDIIIVN-GQNYYPHDIERVA--------EQV 413

Query: 383 IGQDQRRPGAIIVPDKEE 400
            G    R  A  V D++E
Sbjct: 414 EGIKLGRVAACGVYDEKE 431

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =   99 bits (250), Expect = 3e-22
 Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 13/114 (11%)

Query: 228  DLFYEAIGVKVQVGYGLTESSPVIAARRP----------TCNVLGSVGHPINHTEIKIVD 277
            D F E  G+++  GYG TE+SPV +   P          T +  GSVG P+    ++IVD
Sbjct: 916  DAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD 975

Query: 278  AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTGDIGWI 328
             ET E LP G  G++ + G QVM+GY  +P  T + +   D  GW  TGD G +
Sbjct: 976  PETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029

Length = 1146

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 98.5 bits (246), Expect = 4e-22
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 5/93 (5%)

Query: 241 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 295
           GYG+TE+ PV+A     A+ P     GS G  + + E+KIVD ET   LP    G + +R
Sbjct: 330 GYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIR 389

Query: 296 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
           G Q+M+GY  +P AT   +D+DGWL+TGDIG+I
Sbjct: 390 GPQIMKGYLNDPEATANTIDKDGWLHTGDIGYI 422

Length = 537

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 98.0 bits (244), Expect = 7e-22
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 29/199 (14%)

Query: 218 SGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI-------AARRPTCNVLGSVGHPINH 270
           +GG   P  +   +   G     G+G+TE+SP +       A R+      GS+G P+  
Sbjct: 271 NGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKV-----GSIGKPVLF 325

Query: 271 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
            + +++D   N+V   G  G + +RG  VM+ Y+  P AT++ + +DGWL TGD+  +  
Sbjct: 326 CDYELIDENKNKV-EVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDE 383

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR- 389
                      G + + GR K+ I+ S GEN+ PLE+E+   + S + ++ V+G+   + 
Sbjct: 384 D----------GFVYIVGRKKEMII-SGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKW 432

Query: 390 ---PGAIIVPDKEEVLMAA 405
              P A IV     VL+  
Sbjct: 433 GEIPIAFIVKKSSSVLIEK 451

Length = 496

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 5/128 (3%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 79
             +  DD+A  +YTSGTTG PKGVMLTH+NLL     L +      GD+ L +LP     
Sbjct: 126 PPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLPLHFDG 185

Query: 80  ERACGYFIFSRGIELM-----YTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFT 134
                +     G  L+           L D +++Y+   +  VP +   L    +++ + 
Sbjct: 186 SVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEEKKYD 245

Query: 135 SSAARRVV 142
            S+ R V+
Sbjct: 246 LSSLRLVL 253

Length = 412

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 20/164 (12%)

Query: 242 YGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 299
           YG+TE++  I    P      LGS G P+   E+KI       V+P   +G + V+G  V
Sbjct: 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGV--VVPPFEEGEIVVKGPNV 342

Query: 300 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 359
            +GY     AT++   +DGW  TGDIG++             G L +  R  D I+ S G
Sbjct: 343 TKGYLNREDATRETF-QDGWFKTGDIGYLDEE----------GFLYVLDRRSDLII-SGG 390

Query: 360 ENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKE 399
           EN+ P E+EE  L    + +  V+G    +    P A +V   E
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE 434

Length = 483

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.5 bits (238), Expect = 5e-21
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 13/155 (8%)

Query: 231 YEAIGVKVQVGYGLTESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLPAGSK 289
            E  G  +  GYGL+E+SPV            G++G P+  TE+ I D + N+ LP G  
Sbjct: 348 LEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGND-LPLGEP 406

Query: 290 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 349
           G + +RG QVM GY+  P  T + +  DG+  TGD+G +     RG ++       +  R
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE---RGYTK-------IVDR 456

Query: 350 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 384
            KD I++S G NV P E+EE       + ++  +G
Sbjct: 457 KKDMILVS-GFNVYPNEIEEVVASHPGVLEVAAVG 490

Length = 557

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 94.2 bits (235), Expect = 1e-20
 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 21/132 (15%)

Query: 242 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 296
           YG+TE     S+P    RR      G+VG P+    +++ D ET   LP G  G+++V+G
Sbjct: 301 YGMTETNMNTSNPYDGERRA-----GTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG 355

Query: 297 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 356
             V +GY++ P  T +    DG+  TGD+G I             G + + GR KD I+ 
Sbjct: 356 PNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDER----------GYVHIVGRGKDLII- 404

Query: 357 STGENVEPLELE 368
           S G NV P E+E
Sbjct: 405 SGGYNVYPKEVE 416

Length = 504

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 91.9 bits (229), Expect = 2e-20
 Identities = 62/214 (28%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 218 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESS------PVIAARRPTCNVLGSVGHPINH 270
           +GG      I     A    K+   YGLTE+       P    RRP      S+G  I +
Sbjct: 125 AGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRP-----DSIGKAIPN 179

Query: 271 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-----DGWLNTGDI 325
            E+ +VD + N   P G  G +  RG+ VM+GY+ +P AT + L       +  L TGD+
Sbjct: 180 VELWVVDEDGNRCAP-GEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDL 238

Query: 326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 385
             +             G L   GR KD ++ + G  V P E+EE      L+ +  VIG 
Sbjct: 239 VRMDEE----------GYLYFVGR-KDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGV 287

Query: 386 DQRRPGAIIV----------PDKEEVLM-AAKRL 408
                G  IV           D++E+L    K L
Sbjct: 288 PDPLLGQAIVAVVVSADGESLDEKELLKHCRKHL 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 59/171 (34%), Positives = 80/171 (46%), Gaps = 28/171 (16%)

Query: 214 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGH 266
           +  ++G   LP+ +   F    GV V  GYG+TE + V A       RRP     GSVG 
Sbjct: 125 RYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRP-----GSVGL 179

Query: 267 PINHTEIKIV----DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 322
            + +T +++               G  G++ +RG  V  GY  N +    A  EDGWLNT
Sbjct: 180 RLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-NDAHNAGARLEDGWLNT 238

Query: 323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 373
           GD+G I             G L L GRAKD I+   G N++P  +EEA LR
Sbjct: 239 GDLGRIDAD----------GYLWLTGRAKDLIIRG-GHNIDPQMIEEALLR 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 92.3 bits (230), Expect = 3e-20
 Identities = 63/178 (35%), Positives = 84/178 (47%), Gaps = 33/178 (18%)

Query: 232 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 291
            A+G+ V  GYGL+E + V++   P  +  GSVG P+ H ++ I  A   E+L       
Sbjct: 258 RALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSI--ANDGEIL------- 308

Query: 292 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 351
             VRGS  M GY   P AT      D W  TGD+G +             G L + GR K
Sbjct: 309 --VRGSL-MLGYLGEPPAT------DDWWATGDLGHLDEE----------GYLYINGRKK 349

Query: 352 DTIVLSTGENVEPLELEEAALRSSL-IRQIVVIGQDQRRPGAIIVPDKE---EVLMAA 405
           + I+ S G NV P E  E+ L+ +  I Q VV G  Q    A+IVP      + L AA
Sbjct: 350 NLIITSFGRNVSP-EWVESELQQAPAIAQAVVFGDAQPFLVALIVPAPNISDDQLEAA 406

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 91.7 bits (228), Expect = 5e-20
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 27/189 (14%)

Query: 219 GGGSLPMHIDLFYEAI--GVKVQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKI 275
           GG ++P    L  EA   G+ + + YG+TE+ S V  A     +    VG P+   EIKI
Sbjct: 227 GGSAIP--APLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKI 284

Query: 276 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 335
                         G + V+G+ +M+GY      T  A ++ GW NTGDIG +       
Sbjct: 285 KVDNKEGH------GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTGDIGELDGE---- 333

Query: 336 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 391
                 G L + GR  D I+ S GEN+ P E+E    +   I++ VV+   D      P 
Sbjct: 334 ------GFLYVLGRRDDLII-SGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPV 386

Query: 392 AIIVPDKEE 400
           A IV + + 
Sbjct: 387 AYIVSESDI 395

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 91.8 bits (228), Expect = 6e-20
 Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 43/238 (18%)

Query: 208 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV---------IAARRPTC 258
           +A+    A  +GG        L +   G+ +  G+G++E+  V         I A+    
Sbjct: 249 AALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAK---- 304

Query: 259 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 318
              G+ G P    + ++VD + N+  PAG  G + +RG  +  GY++ P AT +A   DG
Sbjct: 305 --AGAAGIPTPTVQTRVVDDQGNDC-PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDG 361

Query: 319 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 378
           W  TGDI            R   G   +  R KD + +S GENV P E+E        IR
Sbjct: 362 WFRTGDIA----------RRDADGFFWVVDRKKD-MFISGGENVYPAEIEAVLADHPGIR 410

Query: 379 QIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 434
           +  V+G          + D +  EV      L+IV AD + L  E+  S L   L K+
Sbjct: 411 ECAVVG----------MADAQWGEV----GYLAIVPADGAPLDLERIRSHLSTRLAKY 454

Length = 488

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 91.5 bits (228), Expect = 8e-20
 Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 32/180 (17%)

Query: 230 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT---------EIKIVDAET 280
             E +G  +Q  +G+ E              L      I  T         EI+IVD + 
Sbjct: 275 VEERLGCPLQQVFGMAEGLV-------NYTRLDDPPDVIMRTQGRPISPADEIRIVDDQG 327

Query: 281 NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 340
             V P G  G +  RG   ++GY++ P    +A  +DG+  TGD+  I            
Sbjct: 328 EPV-PPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDA---------- 376

Query: 341 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIVP 396
            G   + GR KD I    GE + P E+E   L    +    V+G  D+    R  A +VP
Sbjct: 377 DGYYRVVGRIKDQINRG-GEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVP 435

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 107/476 (22%), Positives = 168/476 (35%), Gaps = 130/476 (27%)

Query: 9   TPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK 68
           TP  A        I  D +A Y++TSG+TG PK V+ T + +   I     + P E    
Sbjct: 204 TPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPP 263

Query: 69  FLSMLP--PWH------------VYERACGYFIFSRGI-ELMYTAVRNLKDDLQRYQPHY 113
               L   PW+            ++     Y    + +  +    +RNL++      P  
Sbjct: 264 PPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLRE----ISPTV 319

Query: 114 MISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI----YEGFCLTRNQ 169
             +VP  Y  L   ++K                +R SF    FK +    Y G       
Sbjct: 320 YGNVPAGYAMLAEAMEKD-------------DALRRSF----FKNLRLMAYGG------- 355

Query: 170 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL 229
                   L D L+ R+                      A+ +   G         H   
Sbjct: 356 ------ATLSDDLYERM---------------------QALAVRTTG---------HRIP 379

Query: 230 FYEAIGVKVQVGYGLTESSPVI-----AARRPTCNVLGSVGHPINHTEIKIVDAETNEVL 284
           FY   G         TE++P          R      G +G P+   E+K+         
Sbjct: 380 FYTGYGA--------TETAPTTTGTHWDTERV-----GLIGLPLPGVELKLA-------- 418

Query: 285 PAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHH-SRGRSRRCGG 342
           P G K  V+V+G  V  GY K+P  T  A DE+G+   GD   ++ P    +G       
Sbjct: 419 PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKG------- 471

Query: 343 VLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 400
            L+ +GR  +   LSTG   +V  L  +  A  S +I   VV GQD+   G +  P+   
Sbjct: 472 -LIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPN--- 527

Query: 401 VLMAAKRLSIVHADASE--LSKEKTISLLYGELRKWTSKC---SFQIGPIHVVDEP 451
              A ++L+     A E  +     +++L   L    ++    S +I    ++ EP
Sbjct: 528 -PAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEP 582

Length = 624

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 90.0 bits (224), Expect = 3e-19
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 35/196 (17%)

Query: 232 EAIGVKVQVGYGLTESSP--VIAARRPTCNVLGS---------VGHPINH-TEIKIVDAE 279
           E +G +V   YGLTE+     +   +P  + L +          G       E+ +VD E
Sbjct: 302 EELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPE 361

Query: 280 TNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS 337
           T + +P   K  G + +RG+ VM+GY+KNP AT++A    GW ++GD+  + P       
Sbjct: 362 TMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPD------ 414

Query: 338 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR---RPGAI 393
               G + ++ R+KD I++S GEN+  +E+E    +   + +  V+ + D++    P A 
Sbjct: 415 ----GYIEIKDRSKD-IIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469

Query: 394 IVPDK-----EEVLMA 404
           +V        EE L+ 
Sbjct: 470 VVLKPGASVTEEELIE 485

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 88.9 bits (221), Expect = 4e-19
 Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 18/189 (9%)

Query: 217 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 275
           VS G +LP  + + + EA G+++  G G TE   +  + RP     G+ G P+   E ++
Sbjct: 214 VSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARL 273

Query: 276 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 335
           VD    EV PAG+ G + VRG  +  GY+  P  T++ L  DGWL TGD           
Sbjct: 274 VDESGREV-PAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTGDR---------- 321

Query: 336 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 391
            SR   G    +GRA D I +S G+ V PLE+E A      + +  V+   D+    R  
Sbjct: 322 FSRDADGWYRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLK 380

Query: 392 AIIVPDKEE 400
           A +VP   E
Sbjct: 381 AFVVPRPGE 389

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 86.9 bits (216), Expect = 4e-18
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 42/173 (24%)

Query: 220 GGSLPMHIDL---FYEAIGVKVQVGYGLTES------SPVIAARRPTCNVLGSVGHPINH 270
            G+ P+ +++   F  A GV++  GYGLTE+      +P    RR      GSVG  + +
Sbjct: 340 CGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRI-----GSVGLRLPY 394

Query: 271 TEIKIV----------DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 320
             +++V          D   +EV      G++ + G  V  GY    +  K    EDGWL
Sbjct: 395 QRVRVVILDDAGRYLRDCAVDEV------GVLCIAGPNVFSGYL-EAAHNKGLWLEDGWL 447

Query: 321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 373
           NTGD+G I             G   L GRAKD I+   G N++P  +EEA LR
Sbjct: 448 NTGDLGRIDAD----------GYFWLTGRAKDLIIRG-GHNIDPAAIEEALLR 489

Length = 632

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 86.5 bits (214), Expect = 5e-18
 Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 15/162 (9%)

Query: 235 GVKVQVGYGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 292
           G+ +   YGLTE+SP  A   P       GS+G PI  T+  I D +   VL  G  G +
Sbjct: 354 GLTLVEAYGLTETSPA-ACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGEL 411

Query: 293 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 352
            ++G QVM+GY+K P  T + +D DGWL+TGDI          R    G V +++ R KD
Sbjct: 412 CIKGPQVMKGYWKRPEETAKVMDADGWLHTGDI---------ARMDEQGFVYIVD-RKKD 461

Query: 353 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAII 394
            I++S G NV P E+E+       + ++  +G    + G I+
Sbjct: 462 MILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIV 502

Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 84.2 bits (208), Expect = 2e-17
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 21/162 (12%)

Query: 241 GYGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
            YGLTE+     ++ A R     +GS G  + H EI+I D      LP   KG + +RG 
Sbjct: 296 AYGLTETCSGDTLMEAGREI-EKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGP 353

Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 357
           +V +GY+K+P  T +A     W  +GD+G++             G L L  R KD I +S
Sbjct: 354 KVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEE----------GFLYLTDRKKDMI-IS 401

Query: 358 TGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIV 395
            GEN+   E+E        + +  VIG  D R   R  A++V
Sbjct: 402 GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVV 443

Length = 497

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 82.4 bits (204), Expect = 8e-17
 Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 20/171 (11%)

Query: 232 EAIGVKVQVGYGLTESSPV--IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 289
            A+G K+   +G+TE+  V       P      + G P+   E+++VDA+    LPAG  
Sbjct: 334 AALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAP-LPAGQI 392

Query: 290 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 349
           G ++VRG     GY K P       D DGW +TGD+  I             G + + GR
Sbjct: 393 GRLQVRGCSNFGGYLKRPQLN--GTDADGWFDTGDLARIDA----------DGYIRISGR 440

Query: 350 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 396
           +KD +++  GEN+  +E+E    R   I Q+ ++     R G    A +VP
Sbjct: 441 SKD-VIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 264 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 323
           VG P+  TE KI D ET E+LP G++G + VR   +++GY+  P AT +AL  DGWL+TG
Sbjct: 389 VGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTG 447

Query: 324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 383
           DIG I             G L   GR K+ + ++ G +V P E+E    +   +    V+
Sbjct: 448 DIGKIDEQ----------GFLHYLGRRKEMLKVN-GMSVFPSEVEALLGQHPAVLGSAVV 496

Query: 384 GQDQRRPGAIIV 395
           G+     G + V
Sbjct: 497 GRPDPDKGQVPV 508

Length = 567

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 82.0 bits (202), Expect = 1e-16
 Identities = 94/396 (23%), Positives = 158/396 (39%), Gaps = 120/396 (30%)

Query: 32  YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG--DKFLSMLPPWHVYERACGYFIFS 89
           YTSGTT +PKGV+++H+     + +L  I+  E G    +L  LP +H     C  + F+
Sbjct: 193 YTSGTTADPKGVVISHRGAY--LSTLSAIIGWEMGTCPVYLWTLPMFH-----CNGWTFT 245

Query: 90  RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRI 149
            G     TA R       R+     ++ P +Y                 + +    +  +
Sbjct: 246 WG-----TAARGGTSVCMRH-----VTAPEIY-----------------KNIEMHNVTHM 278

Query: 150 SFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSA 209
               T F  + +G  L  + +                      P+H+L            
Sbjct: 279 CCVPTVFNILLKGNSLDLSPRSG--------------------PVHVL------------ 306

Query: 210 IGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVI----------------- 251
                   +GG   P  +    + +G +V   YGLTE++ PV+                 
Sbjct: 307 --------TGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 252 -AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPS 308
               R   ++LG         ++ + + ET E +P   K  G + ++GS +M+GY KNP 
Sbjct: 359 ELKARQGVSILGL-------ADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPK 411

Query: 309 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 368
           AT +A  + GWLNTGD+G I P           G + ++ R+KD I++S GEN+  +E+E
Sbjct: 412 ATSEAF-KHGWLNTGDVGVIHPD----------GHVEIKDRSKD-IIISGGENISSVEVE 459

Query: 369 EAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE 400
               +   + +  V+          P A +V +K E
Sbjct: 460 NVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGE 495

Length = 579

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 81.8 bits (203), Expect = 2e-16
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 31/209 (14%)

Query: 219 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSVGHPINHT 271
            G +L   +      +     G ++++  G G+TE++P         +  G++G P    
Sbjct: 342 AGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGC 401

Query: 272 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAP 330
           E+K+V        P G K  V+V+G  V  GY++ P  T +A DE+G+  +GD   ++ P
Sbjct: 402 EVKLV--------PVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDP 453

Query: 331 HH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQDQ 387
               RG        L+ +GR  +   LS+G   +V PL     +  + L++ +V+ G D+
Sbjct: 454 ADPERG--------LMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR 505

Query: 388 RRPGAIIVPDKEEVLMAAKRLSIVHADAS 416
              G ++ P+    L A +RL+ + ADAS
Sbjct: 506 DEIGLLVFPN----LDACRRLAGLLADAS 530

Length = 614

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 81.6 bits (201), Expect = 2e-16
 Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 30/171 (17%)

Query: 235 GVKVQVGYGLTESSPV------------IAARRPTCNVLGSVGHPINHTEIKIVDAETNE 282
           GV+VQ  YGLTE S +            IA +        SVG  + + E+K +D +T  
Sbjct: 329 GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKK-------NSVGFILPNLEVKFIDPDTGR 381

Query: 283 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 342
            LP  + G + VR   VMQGY+ N   T + +DEDGWL+TGDIG+I            G 
Sbjct: 382 SLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDD---------GD 432

Query: 343 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAI 393
           + +++ R K+ I    G  V P ELE   L    +    V+       G I
Sbjct: 433 IFIVD-RIKELIKYK-GFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEI 481

Length = 546

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 31/180 (17%)

Query: 242 YGLTESSPVIAARRPTCNV--------LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 293
           +G TE SPV      TC +        LGSVG  I     ++VD   N+V P G  G + 
Sbjct: 323 FGQTEMSPV------TCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDV-PVGEVGEIV 375

Query: 294 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 353
            R   +M GY+ NP AT +A    GW ++GD+          R    G V V++ R KD 
Sbjct: 376 YRAPTLMSGYWNNPEATAEAFA-GGWFHSGDL---------VRQDEEGYVWVVD-RKKDM 424

Query: 354 IVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS 409
           I+ S GEN+   E+E        I ++ VIG+   +    P A+     ++  +  + L+
Sbjct: 425 II-SGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLA 483

Length = 542

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 22/136 (16%)

Query: 265 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 324
           G  +   EI+I + E    LP    G + VRG  +M GYF++  +    L  DGWL+TGD
Sbjct: 388 GKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGD 445

Query: 325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-----LRSSLIRQ 379
           +G++             G L + GRAKD I+++ G N+ P ++E  A     LRS     
Sbjct: 446 LGYLL-----------DGYLYITGRAKDLIIIN-GRNIWPQDIEWIAEQEPELRS---GD 490

Query: 380 IVVIGQDQRRPGAIIV 395
                  Q     I++
Sbjct: 491 AAAFSIAQENGEKIVL 506

Length = 579

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 19/144 (13%)

Query: 272 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331
            ++  D +   +LP G  G +++R   +M+GY  NP AT +AL +DG+  TGD+G     
Sbjct: 360 RVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLG----- 414

Query: 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG---QDQR 388
           ++RG      G  V + R  D++ L  G  V P E+E A      +    V+G     + 
Sbjct: 415 YTRGD-----GQFVYQTRMGDSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468

Query: 389 RPGAIIVPD-----KEEVLMAAKR 407
            P A ++P       E  LMAA R
Sbjct: 469 VPVAFVIPTDGASPDEAGLMAACR 492

Length = 540

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 79.2 bits (196), Expect = 8e-16
 Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 32/212 (15%)

Query: 219 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVI-AARRPTCNVLGSVGHPINH 270
            G +LP  +      L     G ++ +  G G TE++P       PT    G +G P   
Sbjct: 297 AGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRS-GVIGLPAPG 355

Query: 271 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA- 329
           TE+K+V        P G K  V+V+G  V  GY+++P  T +A DE+G+   GD      
Sbjct: 356 TELKLV--------PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVD 407

Query: 330 PHH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQD 386
           P    RG        LV +GR  +   L++G   +V  L +   A  + L++  VV G D
Sbjct: 408 PDDPERG--------LVFDGRVAEDFKLASGTWVSVGALRVALVAALAPLVQDAVVAGHD 459

Query: 387 QRRPGAIIVPDKEEVLMAAKRLSIVHADASEL 418
           +   G ++ P+   +    +   +  A A ++
Sbjct: 460 RDEIGLLVFPN---LAACRRLAGLAEASAEDV 488

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 79.3 bits (196), Expect = 9e-16
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 23/151 (15%)

Query: 261 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 320
           L ++G P+   E+++VD +   VLP    G++++RG  V  GY         A D DGWL
Sbjct: 359 LATLGPPLPGLEVRVVDEDGQ-VLPPRGVGVIELRGESVTPGYL-TMDGFIPAQDADGWL 416

Query: 321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ- 379
           +TGD+G++             G +V+ GR KD I+++ G N+ P ++E AA R   +R  
Sbjct: 417 DTGDLGYLTE----------EGEVVVCGRVKDVIIMA-GRNIYPTDIERAAARVEGVRPG 465

Query: 380 -IVVIGQD--QRRPG-AIIV-----PDKEEV 401
             V +  D    R G A+ V      D  EV
Sbjct: 466 NAVAVRLDAGHSREGFAVAVESNAFEDPAEV 496

Length = 545

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 78.3 bits (194), Expect = 1e-15
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 14  GKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLS 71
                   +  DD+A   YT GTTG PKG MLTH+NL+  ++ +   V    E  D+FL+
Sbjct: 114 APLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLT 173

Query: 72  MLPPWHVYERACG--YFIFSRGIELMYTAVR--NLKDDLQRYQPHYMISVPLVYETLYSG 127
            LP +H++         +      ++    R  N+  +++RY+      VP    TLY+ 
Sbjct: 174 ALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP----TLYNA 229

Query: 128 I 128
           +
Sbjct: 230 L 230

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 35/202 (17%)

Query: 217 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 275
           VS G  L P  ID +  A G+ ++ GYG TE+  ++A         GS+G P     + I
Sbjct: 203 VSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAI 262

Query: 276 VDAETNEVLPAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331
           +D E NE LP G +G + VR       + +GY K+P  T+  +    W  TGD       
Sbjct: 263 IDDEGNE-LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAI---- 316

Query: 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 391
                 +   G     GRA D ++ S+G  + P E+E A +    + +  V+G       
Sbjct: 317 ------KDEDGYFWFVGRADD-VIKSSGYRIGPFEVESALIEHPAVAEAAVVG------- 362

Query: 392 AIIVPDKEEVLMAAKRLSIVHA 413
               PD         R  +V A
Sbjct: 363 ---SPDPV-------RGEVVKA 374

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 34/221 (15%)

Query: 230 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 289
           FY A+GV +   YG TE+     A RP     GS G P+    ++ VD E N V P   +
Sbjct: 310 FYSALGVWILDIYGQTETGMGFIAGRPPV-KNGSSGLPLPGYAVRRVDDEGNPVPPGVGE 368

Query: 290 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 349
            +V++    +   Y+ +P   K+A     +  TGD                 G   L GR
Sbjct: 369 LVVRLPWPGMALTYWNDPERYKEAYFGRWYR-TGDWAERDED----------GYFWLHGR 417

Query: 350 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 409
           + D I +S G+ + PLE+E   L    + +  V+G           P K ++++A   L+
Sbjct: 418 SDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPD--------PGKGQIVLAFVVLA 468

Query: 410 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDE 450
               + +EL++         E+R+  ++    IGP  +  +
Sbjct: 469 -AGVEPNELAE---------EIRRHVAR---NIGPHAIPRK 496

Length = 528

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 23/137 (16%)

Query: 261 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 320
           +G+ G      E++I D E  E LP G  G + V G  V  GY+ NP A  +A   DGW 
Sbjct: 339 IGTCGFERTGMEVQIQDDEGRE-LPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWF 396

Query: 321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 380
            TGD+G     H   R     G L + GRA D + +S G NV P E+EE  L    + ++
Sbjct: 397 RTGDLG-----HLDAR-----GFLYITGRASD-MYISGGSNVYPREIEEKLLTHPAVSEV 445

Query: 381 VVIGQDQRRPGAIIVPD 397
            V+G          VPD
Sbjct: 446 AVLG----------VPD 452

Length = 528

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 20/154 (12%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE-RA 82
            DD A  ++TSG+ G PKGV+L+H+NLL  I  +  ++     D  L  LP +H +    
Sbjct: 144 PDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTV 203

Query: 83  CGYFIFSRGIELMY----TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI----FT 134
                   G+ ++Y       + + + ++ Y+   +   P    T   G  +      F+
Sbjct: 204 TLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTP----TFLRGYARNAHPEDFS 259

Query: 135 SSAARRVVA-----RALIRISFAYTAFKRIYEGF 163
           S   R VVA         R  F      RI EG+
Sbjct: 260 S--LRLVVAGAEKLPEATRELFEEKFGIRILEGY 291

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 59/187 (31%), Positives = 77/187 (41%), Gaps = 34/187 (18%)

Query: 221 GSLPMHIDLFYEAIG----VKVQVGYGLTESSPVIAARRP------TCNVLGSVGHPINH 270
           G+ PM      EAI     +  Q  YG TE+  VI   R           L S G P   
Sbjct: 289 GASPMSPVRLAEAIERFGPIFAQY-YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347

Query: 271 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
             + ++D +  EV   G  G + VRG  VM GY+  P  T +A   DGWL+TGD+     
Sbjct: 348 LRVALLDEDGREV-AQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVA---- 401

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 390
                      G   +  R KD IV + G NV P E+E+       + Q+ VIG      
Sbjct: 402 ------REDEDGFYYIVDRKKDMIV-TGGFNVFPREVEDVLAEHPAVAQVAVIG------ 448

Query: 391 GAIIVPD 397
               VPD
Sbjct: 449 ----VPD 451

Length = 524

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 76.9 bits (190), Expect = 4e-15
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 28/157 (17%)

Query: 232 EAIGVKVQVGYGLTES---SPVIA----------ARRPTCNVLGSVGHPINHTEIKIVDA 278
           E IG  +   YGLTE+   + V A            R        V +P+    + ++D 
Sbjct: 317 EEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPL-QEGVTVLDP 375

Query: 279 ETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 336
           +T + +PA  +  G +  RG+ VM+GY KNP AT++A    GW +TGD+  + P      
Sbjct: 376 DTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPD----- 429

Query: 337 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 373
                G + ++ R+KD I++S GEN+  +E+E+   R
Sbjct: 430 -----GYIKIKDRSKD-IIISGGENISSIEVEDVLYR 460

Length = 545

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 46/204 (22%)

Query: 219 GGGSLPMHIDLFYEAIGV----KVQVGYGLTES----------SPVIAARRPTCNVLGS- 263
           GGGSL     L  +A  +    K+   YG+TE+           P + + + T   +   
Sbjct: 296 GGGSLSS--RLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQT 353

Query: 264 ------------VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 311
                       VG P  H E+KI   E++ V      G +  RG  VM GY+   S T 
Sbjct: 354 KSSSVHQPQGVCVGKPAPHVELKIGLDESSRV------GRILTRGPHVMLGYWGQNSETA 407

Query: 312 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 371
             L  DGWL+TGDIGWI             G L L GR+ D I  + GENV P E+E   
Sbjct: 408 SVLSNDGWLDTGDIGWIDK----------AGNLWLIGRSNDRIK-TGGENVYPEEVEAVL 456

Query: 372 LRSSLIRQIVVIGQDQRRPGAIIV 395
            +   +  +VV+G    R   ++V
Sbjct: 457 SQHPGVASVVVVGVPDSRLTEMVV 480

Length = 563

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 76.1 bits (188), Expect = 9e-15
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 32/193 (16%)

Query: 242 YGLTESSPVI-------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 294
           YG TE +P+          RRP     GS G P+ + E ++VD + N+V   G  G +  
Sbjct: 319 YGQTEIAPLATVLGPEEHLRRP-----GSAGRPVLNVETRVVDDDGNDV-APGEVGEIVH 372

Query: 295 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 354
           R  Q+M GY+ +P  T +A    GW ++GD+G +             G + +  R KD I
Sbjct: 373 RSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEE----------GYITVVDRKKDMI 421

Query: 355 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSI 410
             + GENV   E+EEA      + ++ VIG    +      A++VP K    +    L I
Sbjct: 422 K-TGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVP-KAGATVTEDEL-I 478

Query: 411 VHADASELSKEKT 423
            H  A  L+  K 
Sbjct: 479 AHCRAR-LAGFKV 490

Length = 523

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 62/189 (32%), Positives = 83/189 (43%), Gaps = 41/189 (21%)

Query: 232 EAIGVKVQVGYGLTESSPVIAARRPTCNVL-----GSVGHPINHTEIKIVDAETNEVLPA 286
           + +G+ V   YG TE++ V+      C  L     GS+G P+   E+ +VD     V P 
Sbjct: 229 DELGLTVNEFYGQTEANLVVG----NCAALGPARPGSMGKPVPGHEVAVVDDAGRPVPP- 283

Query: 287 GSKGIVKV-RGSQVM-QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 344
           G  G + V R   VM  GY+ NP AT  A     WL TGD+G           R   G L
Sbjct: 284 GEVGEIAVKRPDPVMFLGYWNNPEATA-AKFAGDWLLTGDLG----------RRDADGYL 332

Query: 345 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA 404
             +GRA D I  S+G  + P E+EE  L+   + +  V+G          VPD E     
Sbjct: 333 WFKGRADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVG----------VPDPE----- 376

Query: 405 AKRLSIVHA 413
             R  IV A
Sbjct: 377 --RGEIVKA 383

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 40/193 (20%)

Query: 228 DLFYEAIGVKVQVGYGLTES-------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAET 280
           D F E  GV++   YG+TE+        P    R P      S+G P    E +I D + 
Sbjct: 305 DAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWP------SIGRPGFCYEAEIRD-DH 357

Query: 281 NEVLPAGSKG---IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR- 336
           N  LPAG  G   I  V G  + + Y+ +P AT + L+ DGWL+TGD G++      G  
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYV---DEEGFF 414

Query: 337 ---SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRRPGA 392
               RRC             ++   GENV  +ELE        I+ IVV+G +D  R  A
Sbjct: 415 YFVDRRC------------NMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEA 462

Query: 393 I---IVPDKEEVL 402
           I   +V ++ E L
Sbjct: 463 IKAFVVLNEGETL 475

Length = 517

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 24/176 (13%)

Query: 217 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR-----RPTCNVLGSVGHPINH 270
           VSG  +LP+ + D      G +    YG+TE+   ++ R     RP     G VG P+  
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRP-----GWVGLPLAG 301

Query: 271 TEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
            E ++VD E    +P    + G ++VRG  +  GY   P AT  A   DGW  TGD+  +
Sbjct: 302 VETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV 360

Query: 329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 384
            P           G+  + GR    ++ S G  +   E+E A L    +R+  V+G
Sbjct: 361 DP----------DGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVG 406

Length = 471

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 75.0 bits (184), Expect = 2e-14
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 26/181 (14%)

Query: 218 SGGGSLPMHIDLFYE-AIGVKVQVGYGLTE------SSPVIAARRPTCNVLGSVGHPINH 270
           SGG  LP+ +  F+E   G+K++ G+G+TE        P     +P     GS+G  +  
Sbjct: 319 SGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKP-----GSIGLMLPG 373

Query: 271 TEIKIVDAE-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 329
            E+ +V  +   +VLP G  G +++RG  V +GY+  P  + +A   D +L TGDIG++ 
Sbjct: 374 IELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYMD 432

Query: 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR 388
                       G   L  R KD I+ S G NV P  +E+A      +++++VIG  DQ 
Sbjct: 433 TD----------GYFFLVDRKKDMII-SGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQY 481

Query: 389 R 389
           R
Sbjct: 482 R 482

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 74.1 bits (183), Expect = 3e-14
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 39/171 (22%)

Query: 232 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 291
           E  G++   GYGLTE +  + A+R   + L  VG P+   E+K+VD    E+        
Sbjct: 261 EQQGIRCWCGYGLTEMASTVCAKR--ADGLAGVGSPLPGREVKLVD---GEIW------- 308

Query: 292 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRA 350
             +RG+ +  GY++        ++++GW  T D G W              G L + GR 
Sbjct: 309 --LRGASLALGYWRQ-GQLVPLVNDEGWFATRDRGEWQ------------NGELTILGRL 353

Query: 351 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI-------GQDQRRPGAII 394
            D +  S GE ++P E+E    +  L++Q+ V+       GQ   RP A++
Sbjct: 354 -DNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQ---RPVAVV 400

Length = 458

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 73.8 bits (182), Expect = 3e-14
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 264 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED---GWL 320
           +G+P       I+D +   V P G +G + + G QV  GY  NP  T +A  +D    W 
Sbjct: 274 IGYPKPGLRALILDEDGRPV-PPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWY 332

Query: 321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 380
            TGD+ ++             G+LV  GR    I L  G  +E  E+E A      + + 
Sbjct: 333 RTGDLVYLED----------DGLLVYLGRKDFQIKLH-GYRIELEEIEAALRALPGVEEA 381

Query: 381 VVIGQD 386
           VV+   
Sbjct: 382 VVLPVP 387

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 74.2 bits (182), Expect = 4e-14
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 20/171 (11%)

Query: 232 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAGSK 289
           E +G  +   +G+TE+  V            S   G P+   E+K++DA     L  G  
Sbjct: 332 ELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN-GAKLSQGET 390

Query: 290 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 349
           G + VRG     GY K P     + D +GW +TGD+ +              G + + GR
Sbjct: 391 GRLLVRGCSNFGGYLKRPHL--NSTDAEGWFDTGDLAFQDAE----------GYIRINGR 438

Query: 350 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 396
           +KD +++  GEN+  +E+E    +   + Q+ ++     R G    A++VP
Sbjct: 439 SKD-VIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 73.5 bits (181), Expect = 5e-14
 Identities = 63/200 (31%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 213 SKAGVSGGG-SLPMHI-DLFYEAIGVKVQVGYGLTES-SPVIA--ARRPTCNVLGSVGHP 267
           S   + GGG ++P  + +   E  G+    GYGLTE+ +   +    RP    LG    P
Sbjct: 306 SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGI---P 362

Query: 268 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGD 324
               + +++D ET E LP G  G + V G QV +GY+  P AT +A  E DG  +  TGD
Sbjct: 363 TFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD 422

Query: 325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 384
           +G +             G   +  R K  I  S G  V P E+E    +   I++  VI 
Sbjct: 423 LGRMDEE----------GYFFITDRLKRMINAS-GFKVWPAEVENLLYKHPAIQEACVIA 471

Query: 385 -QDQRRPG----AIIVPDKE 399
             D RR G    A++V   E
Sbjct: 472 TPDPRR-GETVKAVVVLRPE 490

Length = 546

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 73.6 bits (181), Expect = 5e-14
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 38/209 (18%)

Query: 217 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV--IAARRP---------TCNVLGSVG 265
           V GG ++P  +   +E +GV+V+  +G+TE SP+  +AA +P           +VL   G
Sbjct: 300 VCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQG 359

Query: 266 HPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 323
           +P    E+KI D    E LP   K  G +KVRG  V   Y++      + LD+DG+ +TG
Sbjct: 360 YPPFGVEMKITDDAGKE-LPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDGFFDTG 415

Query: 324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 383
           D+  I  +          G + +  R+KD I  S GE +  ++LE  A+    + +  VI
Sbjct: 416 DVATIDAY----------GYMRITDRSKDVIK-SGGEWISSIDLENLAVGHPKVAEAAVI 464

Query: 384 GQDQ----RRPGAIIV------PDKEEVL 402
           G        RP  I+         +EE+L
Sbjct: 465 GVYHPKWDERPLLIVQLKPGETATREEIL 493

Length = 542

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 72.6 bits (179), Expect = 2e-13
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 21  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 77
           T   DD AT +++SG+ G PKGVML+H N+L  I  + D+    N D  LS LP +H
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834

Length = 1146

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 37/204 (18%)

Query: 241 GYGLTESSPVIAARRPTCNVL---GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
           GYG+TES+ V   R      L    SVG    + + K+VD  T  +LP G+ G + ++G 
Sbjct: 351 GYGMTESTAV-GTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGP 409

Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 357
            VM+GY  NP AT+  +D+DGWL TGDI +              G L +  R K+ I+  
Sbjct: 410 GVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDED----------GYLYIVDRLKE-IIKY 458

Query: 358 TGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADA 415
            G  + P +LE   +    I    V            VPDKE  E+ +A     +V    
Sbjct: 459 KGFQIAPADLEAVLISHPEIIDAAVTA----------VPDKECGEIPVAF----VVRRQG 504

Query: 416 SELSKEKTISLL------YGELRK 433
           S LS+E  I+ +      Y ++RK
Sbjct: 505 STLSQEAVINYVAKQVAPYKKVRK 528

Length = 560

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 40/174 (22%)

Query: 242 YGLTESSPVIAARRPTCNVL---------------GSVGHPINHTEIKIVDAETNEVLPA 286
           YGL ES+  +    P   +                  +G+PI   E++I  +  +     
Sbjct: 310 YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRI--SPGDGAAGV 367

Query: 287 GSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 344
             + I  +++RG+ +M GY          +D D W  TGD+G++             G L
Sbjct: 368 AGREIGEIEIRGASMMSGYLGQAP-----IDPDDWFPTGDLGYLV-----------DGGL 411

Query: 345 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ--IVVIGQDQR--RPGAII 394
           V+ GRAK+ I ++ G N+ P E+E  A +   +R+  +V +G  +   RPG +I
Sbjct: 412 VVCGRAKELITVA-GRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVI 464

Length = 525

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 27/166 (16%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVY 79
           +  DD+A  +YTSGTTG PKGV+LTH+NLL     +   +       D  LS LP +H++
Sbjct: 168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIF 227

Query: 80  ERACGYFIFSRGIELMYTAV---------RNLKDDLQRYQPHYMISVPLVY--------- 121
                  + +  +    T V           +   +++Y+   +  VP            
Sbjct: 228 --GLIVGLLA-PLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK 284

Query: 122 -ETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT 166
            +   S   + + +  A    +   L+           I EG+ LT
Sbjct: 285 DDDDLSSSLRLVLSGGAP---LPPELLERFEERFGPIAILEGYGLT 327

Length = 534

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 70.3 bits (173), Expect = 7e-13
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 77
              DDIA   YTSG+TG PKGVM+TH NLL  +R++      +  D  +S LP +H
Sbjct: 145 PDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 68.7 bits (169), Expect = 2e-12
 Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 23/149 (15%)

Query: 16  HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LH--QIRSLYDIVPAENGDKFLSM 72
            + +  I  +D A  +YTSGTTG+PKGV+L+H+NL LH   + +   +      D +L +
Sbjct: 158 TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSR---DDVYLVI 214

Query: 73  LPPWHVYERACGYFIFSRGIELMYTA---VRNLKDDLQRYQPHYMISVPLVYETL----- 124
           +P +HV+     Y     G + +        NL D ++  +  +  +VP +++ L     
Sbjct: 215 VPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPR 274

Query: 125 -----YSGIQKQIFTSSAARRVVARALIR 148
                +S ++  I+  +A    +  AL+R
Sbjct: 275 AYFVDFSSLRLVIYGGAA----LPPALLR 299

Length = 521

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 260 VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 318
           ++ + G P++   E+++VDA+ N V P G  G +  RG   ++GY++ P    +A D DG
Sbjct: 356 IIHTQGRPLSPDDEVRVVDADGNPVAP-GEVGELLTRGPYTIRGYYRAPEHNARAFDADG 414

Query: 319 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 378
           +  +GD+            R   G LV+EGR KD I    GE +   E+E   LR   + 
Sbjct: 415 FYRSGDL----------VRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVH 463

Query: 379 QIVVIG-QDQ---RRPGAIIVPDKEEVLMAAK 406
              ++   D+    +  A IV  KE  L AA+
Sbjct: 464 DAALVAMPDELLGEKSCAFIVV-KEPPLRAAQ 494

Length = 542

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 67.2 bits (165), Expect = 3e-12
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 25 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 79
          DD A   YTSGTTG PKG MLTH+N+L+   S+   +    GD+ L  +P +HV+
Sbjct: 2  DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF 56

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 235 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD--AETNEVLPAGSKG-I 291
           G KV + YG TE+   +  R P     G+   P   +E++IV      +E LP G +G +
Sbjct: 295 GEKVNI-YGTTEAMNSLYMRDPRT---GTEMRPGFFSEVRIVRIGGSPDEALPNGEEGEL 350

Query: 292 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 351
           V         GY   P AT + L +DGW  T D+  + P           G + + GR  
Sbjct: 351 VVAAADATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDPS----------GTVRILGRVD 399

Query: 352 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKR 407
           D I+ S GEN+ P E+E    R+  + ++VVIG    R G    A +VP + E L +A  
Sbjct: 400 DMII-SGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETL-SADA 457

Query: 408 LSIVHADASELSKEK 422
           L      ASEL+  K
Sbjct: 458 LDTF-CRASELADFK 471

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 217 VSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 275
           VS G +LP  I   + E  G+++  G G TE   +  + RP     G+ G P+   E+K+
Sbjct: 284 VSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGAVKYGTSGKPVPGYEVKL 343

Query: 276 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 335
           VD +  EV   G  G + VRG     GY+     T++      W  TGD           
Sbjct: 344 VDEDGEEV-ADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWTRTGD----------K 391

Query: 336 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPG 391
             R   G     GR+ D + +S G  V P E+E+A L+   + +  V+G +      +P 
Sbjct: 392 YYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPK 450

Query: 392 AIIVP 396
           A +V 
Sbjct: 451 AFVVL 455

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 36/187 (19%)

Query: 242 YGLTESSPVIAARRPTCNVLG--SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 299
           YG+TE++  IA  +P   + G  S G  + H +I I          A   G + ++   +
Sbjct: 261 YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSL 311

Query: 300 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 359
             GY+       Q LD  G   T D+G++               L + GR    I ++ G
Sbjct: 312 ALGYYP------QILDSQGIFETDDLGYLDAQGY----------LHILGRNSQKI-ITGG 354

Query: 360 ENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSIVHADA 415
           ENV P E+E A L + L++ + V+G      G    AI VP    +        +  A  
Sbjct: 355 ENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI----SLEELKTAIK 410

Query: 416 SELSKEK 422
            +LS  K
Sbjct: 411 DQLSPFK 417

Length = 452

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 14/119 (11%)

Query: 275 IVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 332
           +VD +T + +PA  K  G + +RG+ VM+GY KNP A ++A   +GW ++GD+G   P  
Sbjct: 386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPD- 443

Query: 333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 391
                    G + ++ R+KD I++S GEN+  LE+E        + +  V+ +   R G
Sbjct: 444 ---------GYIEIKDRSKD-IIISGGENISSLEVENVVYTHPAVLEASVVARPDERWG 492

Length = 567

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 22/116 (18%)

Query: 241 GYGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 294
           GYG TE SPVI        +  +C     VG PI   ++ IV  ET   + +G  G+V  
Sbjct: 331 GYGTTECSPVITINTVNSPKHESC-----VGMPIRGMDVLIVSEETKVPVSSGETGLVLT 385

Query: 295 RGSQVMQGYFKN-PSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 349
           RG+ +  GY           L  + W  TGD+G++  H          G L L+GR
Sbjct: 386 RGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRH----------GELFLKGR 431

Length = 539

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 26/53 (49%), Positives = 30/53 (56%)

Query: 26  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
           D A  +YTSGTTG PKGV+LTH NL    R+L +       D  L  LP  HV
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHV 141

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 21  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 79
            +  DD+A  ++TSGTTG PKG MLTH+ LL       + +    GD++L+  P +HV+
Sbjct: 162 EVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVF 220

Length = 513

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVY 79
           DD A  +Y+SGTTG PKGVML+HKN+   L Q++      P  + D  L+ LP +H Y
Sbjct: 146 DDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAY 203

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 35/172 (20%)

Query: 242 YGLTESSPVI------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 295
           YG TES  V       A   P     G+VG      E++ VD +    LP G  G +  R
Sbjct: 303 YGSTESGAVTFATSEDALSHP-----GTVGKAAPGAELRFVDEDGRP-LPQGEIGEIYSR 356

Query: 296 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 355
            +      + N    +  +D  G++ +GD+G++             G L L  R +D +V
Sbjct: 357 IAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDAD----------GYLFLCDRKRD-MV 405

Query: 356 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAA 405
           +S G N+ P E+E        +    V G          +PD E  E LMA 
Sbjct: 406 ISGGVNIYPAEIEAVLHAVPGVHDCAVFG----------IPDAEFGEALMAV 447

Length = 509

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 57/188 (30%), Positives = 79/188 (42%), Gaps = 43/188 (22%)

Query: 242 YGLTE-SSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 295
           YG TE +   IA     A  P       VG P     +KI+D   NEV P G  G + V 
Sbjct: 355 YGSTEVAFATIATPEDLAEAPGT-----VGRPPKGVTVKILDENGNEV-PRGVVGRIFVG 408

Query: 296 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 355
                +GY       KQ    DG L++GD+G+              G+L ++GR  D IV
Sbjct: 409 NGFPFEGY--TDGRDKQI--IDGLLSSGDVGYFDED----------GLLFVDGRDDDMIV 454

Query: 356 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS--IVHA 413
            S GENV P E+E+       + +  VIG          V D+E      +RL   +V A
Sbjct: 455 -SGGENVFPAEVEDLLAGHPDVVEAAVIG----------VDDEE----FGQRLRAFVVKA 499

Query: 414 DASELSKE 421
             + L ++
Sbjct: 500 PGAALDED 507

Length = 549

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 26  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG- 84
           D A  +YTSGTTG PKGV+L+H+NLL   ++L   +    GD  LS+LP +HV     G 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 85  YFIFSRGIEL-MYTAVRNLKD---DLQRYQPHYMISVPLVYETL 124
                 G  + +Y            +++Y+   +  VP +Y+ L
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL 104

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 64.9 bits (159), Expect = 3e-11
 Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 37/195 (18%)

Query: 241 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 300
           G G+T  +       P     GSVG  +   E++I+D + NE LP G  G V        
Sbjct: 299 GGGVTVITSEDWLAHP-----GSVGKAV-LGEVRILDEDGNE-LPPGEIGTVYFEMDGYP 351

Query: 301 QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 360
             Y  +P  T  A +  GW+  GD+G++             G L L  R  D I+ S G 
Sbjct: 352 FEYHNDPEKTAAARNPHGWVTVGDVGYLDED----------GYLYLTDRKSDMII-SGGV 400

Query: 361 NVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH-ADASELS 419
           N+ P E+E   +    +  + V G          VPD+E   M  +  ++V  AD ++  
Sbjct: 401 NIYPQEIENLLVTHPKVADVAVFG----------VPDEE---MGERVKAVVQPADGADAG 447

Query: 420 KEKTISLLYGELRKW 434
                  L  EL  W
Sbjct: 448 DA-----LAAELIAW 457

Length = 502

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 24/149 (16%)

Query: 242 YGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 295
           YG +E S V A       RRP      SVG P ++ +++I +    EV   G  G V V+
Sbjct: 286 YGASELSFVTALVDEESERRPN-----SVGRPFHNVQVRICNEAGEEVQK-GEIGTVYVK 339

Query: 296 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 355
             Q   GY        + L+ DGW+   D+G+              G + + GR K+ I+
Sbjct: 340 SPQFFMGY-IIGGVLARELNADGWMTVRDVGYEDEE----------GFIYIVGREKNMIL 388

Query: 356 LSTGENVEPLELEEAALRSSLIRQIVVIG 384
              G N+ P E+E        + +IVVIG
Sbjct: 389 FG-GINIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 26/185 (14%)

Query: 217 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-IAAR----RPTCNVLGSVGHPINH 270
           VS G +LP  +   +YE  G+K+  G G TE   + I+A     +P     G+ G P+  
Sbjct: 267 VSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISANEENAKP-----GATGKPVPG 321

Query: 271 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
            E +IVD + NEV P G  G + VRG    + Y  +    +Q    DGW  TGDI     
Sbjct: 322 YEARIVDDQGNEV-PRGEAGRLAVRGPTGCR-YLDDER--QQEYVRDGWNVTGDIFRQDE 377

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 390
                      G      R+ D IV S G N+   E+E+A L    + +  VIG      
Sbjct: 378 D----------GYFHYVARSDDMIV-SAGYNIAAPEVEDALLTHPDVAECAVIGVPDEER 426

Query: 391 GAIIV 395
           G I+ 
Sbjct: 427 GQIVC 431

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 30/201 (14%)

Query: 228 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 287
           + F E  G+K+  G+G TE++  IA         GS+G P    +I I+D +       G
Sbjct: 319 NTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSC-EVG 377

Query: 288 SKGIVKVRGSQ-----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 342
            +G + +R S      +  GY+++P  T +    DG+ +TGD  W              G
Sbjct: 378 EEGEIVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAW----------MDEDG 426

Query: 343 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD--KEE 400
            L   GRA D ++ S+G  + P E+E A ++   + +  V G          VPD  + +
Sbjct: 427 YLWFVGRADD-LIKSSGYRIGPFEVESALIQHPAVLECAVTG----------VPDPIRGQ 475

Query: 401 VLMAAKRLSIVHADASELSKE 421
           V+ A   L+  +  + EL KE
Sbjct: 476 VVKATIVLTKGYEPSEELKKE 496

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 18/162 (11%)

Query: 214 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEI 273
           +  +  G    +H   F E  GV +  GYG TE++ VIA    +    GS+G      E 
Sbjct: 297 RVALGPGVPAALHAA-FRERFGVDLLDGYGSTETNFVIAVTHGSQRP-GSMGRLAPGFEA 354

Query: 274 KIVDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
           ++VD    E LP G  G + +R  +      GYF  P  T +A   + W +TGD      
Sbjct: 355 RVVDEHDQE-LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRV---- 408

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 372
                  R   G      R KD I    GEN+   E+E+  L
Sbjct: 409 ------VRDADGWFRFVDRIKDAI-RRRGENISSFEVEQVLL 443

Length = 542

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 265 GHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 323
           G P++   E+++VD   N V P G  G++  RG    +GY+K P     A D +G+  TG
Sbjct: 354 GRPMSPDDEVRVVDDHGNPVAP-GETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVV 382
           D+  + P           G +V+ GRAKD I    GE +   E+E   L   ++    +V
Sbjct: 413 DLVRLTPE----------GYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHDAALV 461

Query: 383 IGQDQ---RRPGAIIVPDKEEV 401
              D+    +  A IV     +
Sbjct: 462 SMPDELLGEKSCAFIVVRDPAL 483

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVY 79
           I  DD+A   Y+SGTTG  KGVMLTH+NL+  +  L        +  D  L +LP +H+Y
Sbjct: 155 IKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIY 214

Query: 80  ERA-CGYFIFSRGIELMYTAVRNLKDDL---QRYQPHYMISVP 118
                   +   G  ++     +L+  L   ++Y+  ++  VP
Sbjct: 215 GLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPVVP 257

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 77
            DDIA   ++SG+TG PKGV+LTHKNLL  I ++ +     + D FLS +P  H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTH 158

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 41/240 (17%)

Query: 217 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 275
           VS G  L P  I+   +A G+ ++ GYG TE++ +I          GS+G P+    + +
Sbjct: 205 VSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVKPGSMGRPLPGYRVVL 264

Query: 276 VDAETNEVLPAGSKGIVKV--RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS 333
           +D E  E+     +  + +  R   +M GY  +P  T  A    G+  TGD         
Sbjct: 265 LDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFR-GGYYRTGDKA------- 316

Query: 334 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR--- 389
               R   G L   GRA D +  S+   + P E+E A L    + +  V+   D  R   
Sbjct: 317 ---YRDEDGYLWFVGRADD-VFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAV 372

Query: 390 PGAIIV------PDKE----------EVLMAAKRLSIVHADASELSKEKTISLLYGELRK 433
           P A IV      P +E          E L   KR+  +     EL   KTIS   G++R+
Sbjct: 373 PKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRI-EFVGELP--KTIS---GKIRR 426

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%)

Query: 265 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 324
           G P   TEI+I+D +  E +P G  G + VR      GY     +TK     DG++ +GD
Sbjct: 368 GRPAEGTEIRILDQDFRE-VPTGEVGTIFVRNDTQFDGY--TSGSTKDF--HDGFMASGD 422

Query: 325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 384
           +G++      GR       L + GR  + IV S GENV P+E+E+       + +  VIG
Sbjct: 423 VGYL---DENGR-------LFVVGRDDEMIV-SGGENVYPIEVEKTLATHPDVAEAAVIG 471

Query: 385 QDQRRPG----AIIVPDKE 399
            D  + G    A +V    
Sbjct: 472 VDDEQYGQRLAAFVVLKPG 490

Length = 537

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 47/223 (21%)

Query: 220 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG--------SVGHPIN 269
           GGS   P+ I  + E  GV V   +G+TE+SPV    RP   V G        S G    
Sbjct: 306 GGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPA 365

Query: 270 HTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSAT----------------K 311
             E +IV+    +V+ +  +  G ++VRG+ V   Y+ +P+                   
Sbjct: 366 SLEYRIVN--DGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAN 423

Query: 312 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 371
                DGWL TGD+G +             G L +  RA+D I  S GE +   +LE   
Sbjct: 424 DRFTADGWLRTGDVGSVTRD----------GFLTIHDRARDVI-RSGGEWIYSAQLENYI 472

Query: 372 LRSSLIRQIVVIG-QDQR---RPGAIIV--PDKEEVLMAAKRL 408
           + +  + +  VIG  D +   RP A+ V  P  E     A+RL
Sbjct: 473 MAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERL 515

Length = 576

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 60.7 bits (148), Expect = 8e-10
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 33/133 (24%)

Query: 235 GVKVQVGYGLTESSPV--IAARRPTCNVLGS------------VGHPINHTEIKIVDAET 280
             ++   YG TE+ P+  I +R     +L +            VG P++  E++I+    
Sbjct: 315 DAEILTPYGATEALPISSIESR----EILFATRAATDNGAGICVGRPVDGVEVRIIAISD 370

Query: 281 N--------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WLNTGDIGWI 328
                      L  G  G + V G  V + Y+  P AT+ A   D  G  W   GD+G++
Sbjct: 371 APIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYL 430

Query: 329 APHHSRGRSRRCG 341
                 GR   CG
Sbjct: 431 DAQ---GRLWFCG 440

Length = 552

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWH 77
                DD+A  +YTSGTTG PKG  LTH+NL          VP   +  ++ L+ LP +H
Sbjct: 214 PRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFH 273

Query: 78  VYERA-CGYFIFSRGIELMYTA---VRNLKDDLQRYQPHYMISVPLVYETL 124
            Y    C     S G EL+      +  + D ++++ P ++  VP +YE +
Sbjct: 274 AYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKI 324

Length = 573

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 60.3 bits (147), Expect = 9e-10
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 82
           G+DD+A  +YTSGTTG  KG ML+H NLL    +L D       D  +  LP +H +   
Sbjct: 154 GADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTH--- 210

Query: 83  CGYFIFSRGI 92
            G F+ +   
Sbjct: 211 -GLFVATNVA 219

Length = 504

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 11/77 (14%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC 83
            DD+A  +YTSG+TG PKGVML+H+NL    RS+   +     D+ L++LP         
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLP--------- 51

Query: 84  GYFIFSRGIELMYTAVR 100
             F F  G+  + TA R
Sbjct: 52  --FSFDYGLSQLLTAFR 66

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 31/231 (13%)

Query: 162 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYK-KIQSAIGISKAGVSGG 220
           G C+T  +   S L  L       +    L P   L  KLV + K  +A   S   V  G
Sbjct: 240 GLCVTGGENTTSLLEILTT---NAVATTCLVPT--LLSKLVSELKSANATVPSLRLVGYG 294

Query: 221 GSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPINHTEI 273
           GS  +  D+ F EA GV+    YGL+E+    A   PT +        G+VG P    ++
Sbjct: 295 GSRAIAADVRFIEATGVRTAQVYGLSETG-CTALCLPTDDGSIVKIEAGAVGRPYPGVDV 353

Query: 274 KIVDAE-----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
            +   +          P+ S G + ++    M GY+ NP  T + L  DGW+NTGD+   
Sbjct: 354 YLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDL--- 409

Query: 329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 379
                    RR  G   ++GR+ + I+   G N+ P E++  A   S +R+
Sbjct: 410 -------LERREDGFFYIKGRSSEMII-CGGVNIAPDEVDRIAEGVSGVRE 452

Length = 540

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 59.8 bits (146), Expect = 1e-09
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 24  SDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 70
            DD+A YV YTSG+TG PKGVM+ H+ L++ +  L +      GD+ L
Sbjct: 92  PDDLA-YVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVL 138

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 71
           G DD+A  +YTSG+TG PKGV++TH++L++ +  L      +  D+ L 
Sbjct: 118 GPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQ 166

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 21  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 70
           T   DD A  +YTSG+TG PKGV++TH+N+ + +R+   I+    GD+ L
Sbjct: 95  TSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVL 144

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
           DD+A   YTSGTTG PKG M TH+ +L    +             L+ LP +HV
Sbjct: 84  DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV 137

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 10/65 (15%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-------GDKFLSMLP 74
           I  DD+    Y+SGTTG PKGVMLTHK L   + S+   V  EN        D  L +LP
Sbjct: 176 ISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFHSDDVILCVLP 232

Query: 75  PWHVY 79
            +H+Y
Sbjct: 233 MFHIY 237

Length = 537

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 31/203 (15%)

Query: 227 IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVL--GSVGHPINHTEIKIVDAETNEVL 284
           +  F   +GV +   YG TE+   +       + +  GS+G P+    I ++D +   + 
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLA 281

Query: 285 PAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 340
             G  G + +  +        GY+ +P  T + +    W  TGD+            R  
Sbjct: 282 D-GEPGQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLV----------ERDE 329

Query: 341 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD--K 398
            G     GRA D I+ S G  + P ++E A L    + +  V+G          VPD  +
Sbjct: 330 DGYFWFIGRADDVII-SAGYRIGPFDVESALLEHPAVAEAAVVG----------VPDPLR 378

Query: 399 EEVLMAAKRLSIVHADASELSKE 421
            E++ A   L   +A + EL++E
Sbjct: 379 GEIVKAFVVLKEGYAGSDELAEE 401

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE-R 81
             +D+A  ++TSGT   PKGV LTH NLL   R+       +  D  +S LPP+H Y   
Sbjct: 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFN 240

Query: 82  ACGYFIFSRGIELMYT 97
           +C  F    G+ +++ 
Sbjct: 241 SCTLFPLLSGVPVVFA 256

Length = 539

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.3 bits (139), Expect = 9e-09
 Identities = 23/58 (39%), Positives = 31/58 (53%)

Query: 21  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
           T G DD+A   YTSGTTG PKG M TH+ ++           +      L++LP +HV
Sbjct: 186 TAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHV 243

Length = 546

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 57.9 bits (140), Expect = 9e-09
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query: 260 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG 318
           VL S G       + IVD ++ EVL     G +   G  +  GY++NP A+ +   E DG
Sbjct: 368 VLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDG 427

Query: 319 --WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 368
             WL TGD+G++         R   G L + GR KD +++  G N+ P ++E
Sbjct: 428 RTWLRTGDLGFL---------RD--GELFVTGRLKDMLIVR-GHNLYPQDIE 467

Length = 4334

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 55.9 bits (136), Expect = 1e-08
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 25 DDIATYVYTSGTTGNPKGVMLTHKNLL-HQIRSLYDIVPAENGDKFLSMLPPWH 77
          DD A  +YTSGTTG PKGVMLTH+NLL + + +L  +  +  GD +L   P +H
Sbjct: 1  DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSP-GDVYLLAAPLYH 53

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)

Query: 232 EAIGVKVQVGYGLTESSPVIAARR---------PTCNVLGSVGHPINHTEIKIVDAETNE 282
                 V   +G+TE++  +   +         P  +  G VG      +I+IV ++   
Sbjct: 317 TEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST-GLVGRSTG-AQIRIVGSDGLP 374

Query: 283 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 342
            LPAG+ G V +RG+ V++GY  +P+ T      DGWL TGD+G          S    G
Sbjct: 375 -LPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLG----------SLSAAG 422

Query: 343 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQ---RRPGAIIVP 396
            L + GR K+ I    GE + P  +E        + +  V G  DQ       A+IVP
Sbjct: 423 DLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVP 479

Length = 534

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKF 69
           AG+        +DD+A   YT GTTG  KG MLTH+NL   + Q R+L      E  +  
Sbjct: 195 AGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEIL 254

Query: 70  LSMLPPWHVY 79
           ++ LP +H+Y
Sbjct: 255 IAPLPLYHIY 264

Length = 562

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 25/55 (45%), Positives = 32/55 (58%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
            DD+A  +YTSGTTG PKGVM TH  LL ++RS  + +     D  L   P  H+
Sbjct: 92  PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHI 146

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER-A 82
            DD+A Y +T GTTG PK    +H+N +        +     GD  L+ LP +HV     
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 83  CGYFIFSRGIELMY---------TAVRNLKDDLQRYQPHYMISVPLVY 121
            G    +RG  ++            V N    ++RY+   + +VP V 
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL 108

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 18/119 (15%)

Query: 229  LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 288
             + E  G+++  GYG+TE++PVIA   P  N  G+VG  +   E ++        +  G 
Sbjct: 926  TWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPG---IDEG- 981

Query: 289  KGIVKVRGSQVMQGYFK--NPSATKQALDEDGWLNTGDI------GWIAPHHSRGRSRR 339
             G + VRG  VM GY +  NP   +     DGW +TGDI      G+I     +GR++R
Sbjct: 982  -GRLFVRGPNVMLGYLRAENPGVLEPP--ADGWYDTGDIVTIDEEGFIT---IKGRAKR 1034

Length = 1140

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 6/58 (10%)

Query: 24 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPPWHV 78
           DD A  ++TSGTTG PKGV LTHKNLL   R++   + + P    D+ L+++P +H+
Sbjct: 1  PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTP---SDRCLNVMPLFHI 55

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 54.9 bits (133), Expect = 4e-08
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 26  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
           D A  +YTSGTTG PKGV+LTH  LL   R    ++     D  L+ LP +H+
Sbjct: 82  DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI 134

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 57/237 (24%)

Query: 220 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPV--------------IAARRPTCNVLGS 263
           GGS   P  I  F +  GV+V   +G+TE SP+              +  +R    +L  
Sbjct: 301 GGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQR---KLLEK 357

Query: 264 VGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 321
            G  I   ++KIV  +  E LP   K  G ++VRG  V+  YF+  ++    L  DGW  
Sbjct: 358 QGRVIYGVDMKIVGDDGRE-LPWDGKAFGDLQVRGPWVIDRYFRGDAS---PLV-DGWFP 412

Query: 322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIV 381
           TGD+  I             G + +  R+KD I  S GE +  +++E  A+    + +  
Sbjct: 413 TGDVATIDAD----------GFMQITDRSKDVIK-SGGEWISSIDIENVAVAHPAVAEAA 461

Query: 382 VIGQDQRRPGAIIVP----DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 434
            I                 D+  +L+  KR        +E+++E+ ++   G++ KW
Sbjct: 462 CIA----------CAHPKWDERPLLVVVKR------PGAEVTREELLAFYEGKVAKW 502

Length = 539

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
           D IAT ++TSGTTG PK V  T +N         + +     D +L  LP +H+
Sbjct: 111 DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHI 164

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLL---HQIRSLYDIVPAENGDKFLSMLPPWHVYE 80
            +D A  ++TSG+ G+PKGV+ +HK+LL    QI+++ D  P    D+F+S LP +H + 
Sbjct: 364 PEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN---DRFMSALPLFHSFG 420

Query: 81  RACGYF 86
              G F
Sbjct: 421 LTVGLF 426

Length = 718

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER 81
           IG DD+A Y +T GTTG PK    TH N +        ++    GD     LP +HV   
Sbjct: 210 IGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNAL 269

Query: 82  -ACGYFIFSRGIELMY---------TAVRNLKDDLQRYQPHYMISVPLVYETL 124
              G    +RG  ++            + N    ++RY+ +++  VP VY  L
Sbjct: 270 LVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAAL 322

Length = 632

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI----VPAENGD- 67
           A    ++  +  DD+A   YT GTTG PKG MLTH NL   + S+YD+      A  GD 
Sbjct: 180 AAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAV-SIYDVWGKPSRATRGDV 238

Query: 68  -KFLSMLPPWHVY 79
            + + +LP +H+Y
Sbjct: 239 ERVICVLPLFHIY 251

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI---RSLYDIVPAENGDKFLSMLPPWHVY 79
             DD+A  ++TSG+TG PKGV+ TH     QI   R  Y I P   G+  L   P + ++
Sbjct: 172 APDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEP---GEIDLPTFPLFALF 228

Query: 80  ERACG------YFIFSR 90
             A G          +R
Sbjct: 229 GPALGMTSVIPDMDPTR 245

Length = 552

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSMLPPWH 77
           +  DD+A  +YTSGT   PKG MLTH+ L+ +  S   IV  +    D  L  LP +H
Sbjct: 168 LADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC--IVAGDMSADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLH---QIRSLYDIVPAENGDKFL 70
           DD+A  ++TSG+TG PKGV ++H NL      +   +D+     GD F 
Sbjct: 97  DDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTE---GDVFS 142

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 25/192 (13%)

Query: 241 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 300
            YG TE++    A R T     ++G P+ +    ++D +   ++P G+ G + + G  V 
Sbjct: 237 TYGPTEATVTATASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVA 296

Query: 301 QGYFKNPSATKQALDEDGWLN---------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 351
           +GY   P  T +    D +           TGD+                G L   GR K
Sbjct: 297 RGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLED----------GSLEFLGR-K 345

Query: 352 DTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPDKEEVLMAAKR 407
           D  V   G+ +E  E+E        +    V+        ++  A +  D       A  
Sbjct: 346 DDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADV 405

Query: 408 LSI-VHADASEL 418
               + +   E 
Sbjct: 406 DIALLRSALRER 417

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 19  YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP--- 75
            + +  D +A  +YTSG+TG PKGV + H+ L + +         +  D+ L++      
Sbjct: 360 PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFD 419

Query: 76  ---WHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 124
              + ++              L+      L + L+      ++ VPL+   L
Sbjct: 420 ASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLL 471

Length = 642

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 32  YTSGTTGNPKGVMLTHKNLL 51
           YTSGTTG PKG  LTH+N+L
Sbjct: 206 YTSGTTGFPKGATLTHRNIL 225

Length = 559

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
           D  AT ++TSG+TG PK V+ T  N L   R   + +     D +L  LP +HV
Sbjct: 77  DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV 130

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 33/190 (17%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNL----LHQIRSLYDIVPAENGDKFLSMLPPWHVYE 80
           +D+A   YT GTTG PKGVMLTHKNL    L  ++ LY+    E  +  L +LP +HVY 
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGE--EVVLGVLPFFHVYG 263

Query: 81  RAC--------GY---FIFSRGIELMYTAVRNLKDDLQRYQPHYMISV---PLVYETLYS 126
                      GY    I    +++++ A++  K  L    P   I++   PL+ E   S
Sbjct: 264 MTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDIS 323

Query: 127 GIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARI 186
            I+  I  S+     V      ++       ++ EG+ LT      S  V   ++LW + 
Sbjct: 324 SIRACISGSAPLPVEVQEKFETVTGG-----KLVEGYGLTE-----SSPVTHSNFLWEKR 373

Query: 187 I---CAILWP 193
           +     + WP
Sbjct: 374 VPGSIGVPWP 383

Length = 563

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
            DD A  + TSG+TG PK V+LTH+N+L +      +      D  L+ +P  HV
Sbjct: 166 PDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLDHV 220

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV 61
           A + +++E + +DD    +YTSGTTG PKG++ +H   L + R      
Sbjct: 159 ASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH 207

Length = 528

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 9/65 (13%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-------SLYDIVPAENGDKFLSMLP 74
           I  DD+A  +Y+SGTTG  KGV+LTH+NL+  +        S Y+   ++N   +L+ LP
Sbjct: 195 IKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDN--VYLAALP 252

Query: 75  PWHVY 79
            +H+Y
Sbjct: 253 MFHIY 257

Length = 560

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 22/207 (10%)

Query: 176 VALIDWLWARIICAILW---PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPM-HIDLFY 231
            AL++ L A+ I  +L     L LL    +   + S     +  +SGG +LP+  +    
Sbjct: 447 AALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLL 506

Query: 232 EAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAG 287
           +   +  ++   YG TE++    +   +  +   V  G P+ +T++ I+D +    LP G
Sbjct: 507 QLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLG 565

Query: 288 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVL 346
             G + + G  +  GY   P  T +         TGD+   +A            G L  
Sbjct: 566 VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLAD-----------GALEY 614

Query: 347 EGRAKDTIVLSTGENVEPLELEEAALR 373
            GR  D+ V   G  +E  E+E A   
Sbjct: 615 LGRK-DSQVKIRGFRIELGEIEAALAE 640

Length = 642

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 13/115 (11%)

Query: 260 VLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 318
           +  + G P+    E+ + DA+ N + P G  G +  RG    +GY+K+P     A D +G
Sbjct: 351 IFTTQGRPMSPDDEVWVADADGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 409

Query: 319 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 373
           +  +GD+  I P           G + + GR KD I    GE +   E+E   LR
Sbjct: 410 FYCSGDLVSIDP----------DGYITVVGREKDQIN-RGGEKIAAEEIENLLLR 453

Length = 536

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 74
             D+A  +YTSG+TG PKGV+L+H+NL+   +S+   +     D+ L++LP
Sbjct: 162 DSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLP 212

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 71
            DD+A  +YTSG+TG PKGV ++H+ L++ + S+         D+ L+
Sbjct: 92  PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLA 139

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKN 49
           E    D++AT +YTSGTTG PKGV+ T+ N
Sbjct: 136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGN 165

Length = 483

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 20/116 (17%)

Query: 21  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-------QIRSLYDIVPAENGDKFLSML 73
            + +DD A  ++TSGTT  PKGV++TH NL         Q     D       D +L+++
Sbjct: 169 PLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDD-------DVYLTVM 221

Query: 74  PPWHV-YERACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVYETL 124
           P +H+  +       FS G   +    Y+A R     + +Y+      +P++  TL
Sbjct: 222 PAFHIDCQCTAAMAAFSAGATFVLLEKYSA-RAFWGQVCKYRATITECIPMMIRTL 276

Length = 517

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYER 81
           DD A  ++TSG+TG PKGV+ TH+     +  +RSLY I     GD+ L+  PP+ ++  
Sbjct: 85  DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIRE---GDRDLAAFPPFALFGP 141

Query: 82  ACG 84
           A G
Sbjct: 142 ALG 144

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 52/234 (22%)

Query: 217 VSGGGSLPMHIDL---FYEAI--GVKVQVGYGLTESSPV--------IAARRP------- 256
           +S G   P+  DL   F   +    ++   YG TE+ PV        +A           
Sbjct: 205 LSAGA--PVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAGAG 262

Query: 257 TCNVLGSVGHPINHTEIKIVDA--------ETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 308
            C     VGHP+   +++I+          + +  LP G  G + V G  V + Y+  P 
Sbjct: 263 VC-----VGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPE 317

Query: 309 ATKQA---LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 365
           ATK A        W   GD+G+      +GR       L   GR K   V + G  +  +
Sbjct: 318 ATKLAKISDGNRIWHRMGDLGYFDD---QGR-------LWFCGR-KAHRVETAGGTLFTV 366

Query: 366 ELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADAS 416
            +E+   R   +R+  ++G  +   + P  ++ P    +    +    + A A 
Sbjct: 367 PVEQVFNRHPGVRRSALVGVGKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAK 420

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 51.4 bits (124), Expect = 7e-07
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNL-LHQIRS-LYDIVPAENGDKFLSMLPPWHV 78
           +  A   YTSGTTGNPKGV+ +H++L LH + S L D +     D  L ++P +HV
Sbjct: 162 NTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFHV 217

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-----ENGDKFLSMLPPW 76
           I  DDIA   YT GTTG  KG MLTH+NL+  ++  +  +       E  +  ++ LP +
Sbjct: 205 IEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLY 264

Query: 77  HVYERACGYFIF 88
           H++       +F
Sbjct: 265 HIFALTANGLVF 276

Length = 560

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 50.9 bits (123), Expect = 8e-07
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 27/177 (15%)

Query: 241 GYGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 296
            YG TE++  +       + L      +G PI +T + ++D +   V P G  G + + G
Sbjct: 240 AYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLDEDLRPV-PVGVPGELYIGG 298

Query: 297 SQVMQGYFKNPSATKQALDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLEGR 349
           + V +GY   P  T +    D +         TGD+    P           G L   GR
Sbjct: 299 AGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPD----------GNLEFLGR 348

Query: 350 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVL 402
           A D + +  G  +E  E+E A L    +R+ VV+ ++         A +VP     L
Sbjct: 349 ADDQVKIR-GYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAEL 404

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 51.5 bits (124), Expect = 8e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 77
           DD A  ++TSG+ G PKGV+L+H+NLL     +   +     DK  + LP +H
Sbjct: 793 DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFH 845

Length = 1140

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 26/124 (20%)

Query: 19  YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK--FLSMLPPW 76
           +  +G D +A Y++TSG+TG PK V+ TH+ L      +    P    +    +  L PW
Sbjct: 158 FAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWL-PW 216

Query: 77  -HVYERACGYFIFSRGIE---------------LMYTAVRNLKDDLQRYQPHYMISVPLV 120
            H +    G   F+  +                L    +RNL++      P    +VP  
Sbjct: 217 NHTFG---GNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLRE----VSPTVYFNVPKG 269

Query: 121 YETL 124
           +E L
Sbjct: 270 FEML 273

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 27/212 (12%)

Query: 217 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 275
           V+GG  L P  ++ +    G+ +  GYG TE+  + A  +      GS+G      +++I
Sbjct: 297 VTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANFKGMKIKPGSMGKASPPYDVQI 356

Query: 276 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
           +D   N VLP G++G + +R            Y  NP  T   +  D ++ TGD      
Sbjct: 357 IDDNGN-VLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGD------ 408

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQRR 389
              RG      G     GRA D ++ S+G  + P E+E A +   +++   VV   D  R
Sbjct: 409 ---RGIMDE-DGYFWFVGRADD-VINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIR 463

Query: 390 PGAIIVPDKEEVLMAAKRLSIVHADASELSKE 421
            G ++   K  V++A + LS    D  +L+KE
Sbjct: 464 -GEVV---KAFVVLAPQFLS---HDPEQLTKE 488

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 44/188 (23%)

Query: 235 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKG- 290
           G +V+ GYG +E + VI  R P     GS+G       + I + ET          + G 
Sbjct: 288 GCQVEDGYGSSEGA-VIVVREPGTPP-GSIGRGAP--GVAIYNPETLTECAVARFDAHGA 343

Query: 291 ----------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 340
                     +V   G+   +GY+ NP AT + +   G   +GD+ +          R  
Sbjct: 344 LLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAY----------RDA 392

Query: 341 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 400
            G +   GR  D + +  GEN+    +E   LR   I ++ V            VPD E 
Sbjct: 393 DGWIYFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA----------VPD-ER 440

Query: 401 V---LMAA 405
           V   +MAA
Sbjct: 441 VGDQVMAA 448

Length = 540

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 14  GKHYKY--ETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDK 68
           G+  +Y    +  +D+A   YT GTTG  KG MLTH+N+   L Q ++ Y  +     + 
Sbjct: 193 GRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKEL 252

Query: 69  FLSMLPPWHVYERA--CGYFIFSRGIELMYTAVRNLK---DDLQRYQ 110
            ++ LP +H++     C  FI   G  L+ T  R++     +L++Y 
Sbjct: 253 VVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYP 299

Length = 560

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 9   TPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAEN 65
           TP  A     +  +G D IA +++TSG+TG PK V+ TH+ L      +   +    AE 
Sbjct: 193 TPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP-FLAEE 251

Query: 66  GDKFLSMLPPWH 77
               +  L PW+
Sbjct: 252 PPVLVDWL-PWN 262

Length = 614

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 25/155 (16%)

Query: 241 GYGLTESSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 295
            YG TE++    A               +G P+ +T + ++D +   V P G  G + + 
Sbjct: 267 LYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPV-PVGVVGELYIG 325

Query: 296 GSQVMQGYFKNPSATKQA-LDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLE 347
           G  V +GY   P  T +  + +            TGD+                G L   
Sbjct: 326 GPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLV----------RYLPDGNLEFL 375

Query: 348 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 382
           GR  D + +  G  +E  E+E A LR   +R+ VV
Sbjct: 376 GRIDDQVKIR-GYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLL 51
           + +DD+A  +YTSG+TG PKGV + H+ ++
Sbjct: 124 VDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 16/128 (12%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-------RSLYDIVPAEN 65
           A + +K   +G DD+A   YT GTTG  KG  L H+N++  +       +  ++  P  +
Sbjct: 192 ARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPD 251

Query: 66  GDKFLSMLPPWHVYERACGYFIFSR--GIELMYTAVRNLK---DDLQRYQPHYMISVPLV 120
              F+  LP +H++       +  R  G  ++    R++     +L++YQ H   +V   
Sbjct: 252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV--- 308

Query: 121 YETLYSGI 128
             TLY+ +
Sbjct: 309 -NTLYNAL 315

Length = 557

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 245 TESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLP---AGSKGIVKVRGS--Q 298
           TE+  ++ A  P   V  GS+G P+   E  +++ + + + P    G  G + ++     
Sbjct: 242 TETGAIMIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPS 301

Query: 299 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLST 358
           + +GY  N      +   DGW  TGD+ +          R   G     GRA D I  + 
Sbjct: 302 MFRGYLGNEERYASSF-VDGWYLTGDLAY----------RDEDGYFWFVGRADDVI-KTA 349

Query: 359 GENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 395
           G  V P E+E A +    + +  VIG+     G I+ 
Sbjct: 350 GHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVK 386

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 41/197 (20%)

Query: 224 PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV 283
           P  I  F    G  V  G+G TE   V   R P     G++G       + IVD +T   
Sbjct: 279 PGDIARFARRFGCVVVDGFGSTEGG-VAITRTPDTPP-GALGPLPP--GVAIVDPDTGTE 334

Query: 284 LPAGSKG-------------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
            P                  +V   G    +GY+ +P A  + +   G   +GD+ +   
Sbjct: 335 CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDA 393

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 390
                      G     GR  D + +  GEN+    +E   LR     ++ V        
Sbjct: 394 D----------GYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATEVAVYA------ 436

Query: 391 GAIIVPDKE--EVLMAA 405
               VPD    + +MAA
Sbjct: 437 ----VPDPVVGDQVMAA 449

Length = 529

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-RSLYDIVPAENGD-KFL 70
           AG     E I   D+    ++SGTTG  KGVMLTH+NL+  +  SL+ + P   G    L
Sbjct: 172 AGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTL 231

Query: 71  SMLPPWHVY 79
            ++P +H+Y
Sbjct: 232 GLIPFFHIY 240

Length = 546

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 22  IGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRS 56
           +  DD+A YV +TSG+TG PKGVM+TH+  ++ I  
Sbjct: 123 VDPDDLA-YVIFTSGSTGEPKGVMITHRAAVNTILD 157

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 242 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 296
           YG TE++  + + + T  +L       +G       + I+D E  E LP G KG + + G
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVG 349

Query: 297 SQVMQGYFKNPSATKQALDEDGWL---NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 353
             V +GY  NP  T +A           TGD G I             G L  +GR    
Sbjct: 350 PSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT-----------DGQLFYQGRLDFQ 398

Query: 354 IVLSTGENVEPLELEEAALRSSLIRQIVVI 383
           I L  G  +E  ++E    +SS I   VV+
Sbjct: 399 IKLH-GYRIELEDIEFNLRQSSYIESAVVV 427

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 47.9 bits (115), Expect = 6e-06
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 30/160 (18%)

Query: 242 YGLTE------SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 295
           YG TE       + V AA  P      ++G PI +T++ ++D +  + +P G  G + + 
Sbjct: 237 YGPTETTIWSTCARVTAADGP-----VTIGRPIANTQVYVLDED-LQPVPPGVPGELYIG 290

Query: 296 GSQVMQGYFKNPSATKQAL-----DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEG 348
           G  V +GY   P  T +       D+ G     TGD           R  R  G L   G
Sbjct: 291 GDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGD---------LVR-WRPDGRLEYLG 340

Query: 349 RAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 388
           RA D + +  G  +E  E+E A      +   VV+ +++ 
Sbjct: 341 RADDQVKIR-GFRIELGEIEAALRAHPGVADAVVVVREEG 379

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 55
           G DD+   +YTSGTTG PKGVM T   L+  I 
Sbjct: 195 GPDDVTQLIYTSGTTGEPKGVMHTANTLMANIV 227

Length = 547

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 38/162 (23%)

Query: 242 YGLTES------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 295
           YGLTE+       P    RRP      S+G  I + E+ ++  + +E  P     +V  R
Sbjct: 309 YGLTEAFRSTYLPPEEVDRRPD-----SIGKAIPNAEVLVLREDGSECAPGEEGELVH-R 362

Query: 296 GSQVMQGYFKNPSATKQ------------ALDEDG-WLNTGDIGWIAPHHSRGRSRRCGG 342
           G+ V  GY+ +P  T +             L E   W  +GD             R   G
Sbjct: 363 GALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW--SGDTVR----------RDEEG 410

Query: 343 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 384
            L   GR +D ++ ++G  V P E+EE A  + L+ + V  G
Sbjct: 411 FLYFVGR-RDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFG 451

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 24/68 (35%), Positives = 34/68 (50%)

Query: 10  PVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKF 69
           P   G  +       D IA   YTSG+T  P GV +TH NL   +  + D +  + GD+ 
Sbjct: 165 PDEVGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRG 224

Query: 70  LSMLPPWH 77
           +S LP +H
Sbjct: 225 VSWLPFFH 232

Length = 631

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 17/73 (23%)

Query: 21  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI---RSLYDIVPAENGDKFLS------ 71
           T GSDD A  +YTSGTTG PKG +  H+ LL  +      +++ P   GD F +      
Sbjct: 84  TDGSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAP-RPGDVFWTPADWAW 142

Query: 72  -------MLPPWH 77
                  +LP  +
Sbjct: 143 IGGLLDVLLPALY 155

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYERA 82
           DD+A ++Y+SG+TG PKGV+  H ++L      Y  +++     D   S    +  Y   
Sbjct: 161 DDMAFWLYSSGSTGRPKGVVHLHHDMLVTAE-AYAKNVLGITEDDVVFSAAKLFFAYGLG 219

Query: 83  CG-YFIFSRGIELMYTAVRNLKDD----LQRYQPHYMISVPLVYETLYSGI 128
            G YF  S G   +    R   D     ++RY+P     VP    TLY+ +
Sbjct: 220 NGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVP----TLYAAM 266

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 224 PMHIDLFYEAI-GVKVQVGYGLTES-----SPVIAARRPTCNVLGSV--GHPINHTEIKI 275
           P H+     A  G+++  GYG TE+       VI           S+  G PI +T + I
Sbjct: 254 PAHVRRVLAACPGLRLINGYGPTENTTFSTCHVITRLDE---AADSIPIGRPIPNTTVYI 310

Query: 276 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN------TGDIGWIA 329
           +D E   V P G  G + V G  +  GY   P  T +    D +        TGD     
Sbjct: 311 LDEEGQPV-PIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGD----- 364

Query: 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQ 385
                 R  R  G +   GR  D  V   G  +E  E+E+A L+   +R+  V+      
Sbjct: 365 ----LAR-WRPDGNIEFLGRI-DRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAA 418

Query: 386 DQRRPGAIIVPD 397
             +R  A +V  
Sbjct: 419 GDKRLVAYVVAR 430

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLL 51
           DD    ++TSGTTG PKGV ++H NL+
Sbjct: 143 DDNYYIIFTSGTTGKPKGVQISHDNLV 169

Length = 503

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 22/94 (23%)

Query: 273 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLN 321
           ++IVD +T    PAG+ G + V G  V  GY++ P  T++              E  WL 
Sbjct: 381 VRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLR 440

Query: 322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 355
           TGD+G+I+            G L + GR KD ++
Sbjct: 441 TGDLGFIS-----------EGELFIVGRIKDLLI 463

Length = 578

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKN 49
            D  +  YTSGTTGNPKGV+ TH+ 
Sbjct: 167 WDPISLNYTSGTTGNPKGVVYTHRG 191

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-VPAENGDKFLSMLP 74
           D +A   YT GTTG PKG   T +++++   + Y + V       FLS LP
Sbjct: 209 DALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLP 259

Length = 567

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 53
             DIA   YT GTTG PKGVM TH+++   
Sbjct: 167 PPDIAGLAYTGGTTGKPKGVMGTHRSIATM 196

Length = 524

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 31/194 (15%)

Query: 229 LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 288
           L+ +  G+++  GYG+TE +PV++   P     G+VG  +   + +++      V     
Sbjct: 498 LWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLL-----SVPGIEQ 552

Query: 289 KGIVKVRGSQVMQGYFK--------NPSA-TKQALDEDGWLNTGDIGWIAPHHSRGRSRR 339
            G ++++G  +M GY +         P+A   +   E GW +TGDI              
Sbjct: 553 GGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQ-------- 604

Query: 340 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ-IVVIGQDQRRPGAIIV--P 396
             G + ++GRAK    ++ GE V    +E+ AL  S  +Q    I  D  +  A+++   
Sbjct: 605 --GFVQIQGRAKRFAKIA-GEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT 661

Query: 397 DKE---EVLMAAKR 407
           D E   E L    R
Sbjct: 662 DSELTREKLQQYAR 675

Length = 718

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 40/179 (22%)

Query: 219 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIV 276
           GGG  P  +     A G+ V   YG++E          T    G V  G P++   +++ 
Sbjct: 159 GGGPAPAPVLDAAAAAGINVVRTYGMSE----------TSG--GCVYDGVPLDGVRVRVE 206

Query: 277 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 336
           D            G + + G  + +GY +NP        E GW  T D+G +        
Sbjct: 207 D------------GRIALGGPTLAKGY-RNP-VDPDPFAEPGWFRTDDLGAL---DD--- 246

Query: 337 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 395
                GVL + GRA D  + + G  V P  +E A      +    V G    R G  +V
Sbjct: 247 -----GVLTVLGRA-DDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVV 299

Length = 358

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKF 69
            G   K   +G DDIA   YT GTTG  KG MLTH NL   + Q+R+    +  +     
Sbjct: 195 RGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLM 254

Query: 70  -------LSMLPPWHVY 79
                  ++ LP +H+Y
Sbjct: 255 KEGQEVMIAPLPLYHIY 271

Length = 562

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE-NGDKFLSMLPPWH 77
            G DD+A    TSG+TG+PK V +TH NL     +++     +   D  +S LP +H
Sbjct: 149 TGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205

Length = 545

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 22/55 (40%), Positives = 26/55 (47%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 77
             DD+   +YTSGTTG PKGVM T   L   I    + +    GD  L   P  H
Sbjct: 193 SPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAH 247

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLL 51
           DD     YTSGTTG PKG  L+H N+L
Sbjct: 201 DDPINIQYTSGTTGFPKGATLSHHNIL 227

Length = 558

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 15/108 (13%)

Query: 262 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG-WL 320
           G+VG  +   ++ I+D +  E LP G  G +   G +  + Y  +P+ T +A   DG W 
Sbjct: 328 GTVGRAM-FGDLHILDDDGAE-LPPGEPGTIWFEGGRPFE-YLNDPAKTAEARHPDGTWS 384

Query: 321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 368
             GDIG++             G L L  RA   I +S G N+ P E E
Sbjct: 385 TVGDIGYVDE----------DGYLYLTDRAAFMI-ISGGVNIYPQEAE 421

Length = 511

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)

Query: 242 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 296
           YG TE++  + +   T  +L       +G+    + + I+D E    LP G +G + + G
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISG 351

Query: 297 SQVMQGYFKNPSATKQAL-DEDGW--LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 353
             V +GY  NP  T +A    DG    +TGD G++             G+L  +GR    
Sbjct: 352 PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-----------DGLLFYQGRIDFQ 400

Query: 354 IVLSTGENVEPLELEE--AALR-SSLIRQIVVI 383
           I L    N   +ELEE    LR SS +   VV+
Sbjct: 401 IKL----NGYRIELEEIEQNLRQSSYVESAVVV 429

Length = 503

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 29/184 (15%)

Query: 242 YGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
           YG TE++  I     TC   G     +G PI +    I+DA    V P G  G + + G 
Sbjct: 803 YGPTEAA--IDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPV-PVGVLGELYLAGR 859

Query: 298 QVMQGYFKNPSATKQALDEDGWLN------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 351
            + +GY   P  T +      ++       TGD           R R   GV+   GR  
Sbjct: 860 GLARGYHGRPGLTAERFVPSPFVAGERMYRTGD---------LARYRA-DGVIEYAGRID 909

Query: 352 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE-----EVLMAAK 406
             + L  G  +E  E+E   L    +R+  V+  D ++    +V + E     E L A  
Sbjct: 910 HQVKLR-GLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESEGGDWREALKAHL 968

Query: 407 RLSI 410
             S+
Sbjct: 969 AASL 972

Length = 5163

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK-NLLHQIRSLY-DIVPAENGDKFL 70
           A   + ++T   +  A   YTSGTTG+PKGV+ +H+ N+LH + +   D +     D  L
Sbjct: 165 ADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTML 224

Query: 71  SMLPPWH 77
            ++P +H
Sbjct: 225 PVVPLFH 231

Length = 542

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 28/136 (20%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-GDKFLSMLPPWHVYE 80
             +DDIA ++YTSGTTG PKGVM  H++          +  AE    + L + P   ++ 
Sbjct: 88  TEADDIAYWLYTSGTTGKPKGVMHRHRDP---------LTFAEAFARELLGLQPGDRIFS 138

Query: 81  RACGYFIFSRGIELMY------TAVRN--------LKDDLQRYQPHYMISVPLVYETLYS 126
            +  +F +  G  L++      +AV          + D L R++P  +  VP     LY 
Sbjct: 139 SSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVP----ALYR 194

Query: 127 GIQKQIFTSSAARRVV 142
            + +    S+   R V
Sbjct: 195 ALLESGAGSAPLFRSV 210

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 74
           +  DD    +YTSG+TGNPKGV ++H NL+     +    P   G +FL+  P
Sbjct: 138 VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAP 190

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 32  YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 74
           YTSG+TG PKGV L+   L    +SL + +     ++ L +LP
Sbjct: 119 YTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERHLCLLP 161

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 26  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY 85
           D+A +  + GTTG PK +  TH + L+  R+  +    + G  +L++LP  H +  +   
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPG 199

Query: 86  FI 87
            +
Sbjct: 200 LL 201

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 16  HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSML 73
            Y +  +     A   Y++GTTG PKGV+ +H++L  Q  SL   D +   +G+ FL  +
Sbjct: 172 VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCV 231

Query: 74  PPWHV 78
           P +HV
Sbjct: 232 PIYHV 236

Length = 576

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 41/166 (24%)

Query: 263 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ---------- 312
           S G         IVD +T   LP G  G + + G  + +GY+  P  T++          
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRL 462

Query: 313 --------ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEP 364
                   A D+  WL TGD+G               G L + GR  D IV+  G N  P
Sbjct: 463 AEGSHADGAADDGTWLRTGDLGVYL-----------DGELYITGRIADLIVID-GRNHYP 510

Query: 365 LELE-EAALRSSLIRQIVVIGQDQRRPGAIIVP--DKEEVLMAAKR 407
            ++E   A  S ++R+  V         A  VP  D E +++ A+R
Sbjct: 511 QDIEATVAEASPMVRRGYV--------TAFTVPAEDNERLVIVAER 548

Length = 612

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 77
             + + D A Y+YTSGTTG PK  +++H   L  +     ++     D     LP +H
Sbjct: 194 SGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYH 251

Length = 600

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 53
           I +D  A  +YTSGTTG PKG +LTH NL  Q
Sbjct: 171 IPNDSPALIMYTSGTTGRPKGAVLTHANLTGQ 202

Length = 542

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 33  TSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGI 92
           TSGTTG PKG      + L  +  L   VP   G+  L   P +H    A G+   +  +
Sbjct: 215 TSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFH----ATGWAHLTLAM 270

Query: 93  ELMYTAV-------RNLKDDLQRYQPHYMISVP 118
            L  T V           +D+ +++   ++ VP
Sbjct: 271 ALGSTVVLRRRFDPEATLEDIAKHKATALVVVP 303

Length = 549

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLL 51
            +DD+A   +TSGTTG PKG M  H+++L
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDIL 173

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 2   LFSLPILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ---IRSLY 58
           L  +  L P +A + ++   +  DDIA   YTSG+T  PKGV ++H NL+     IR  +
Sbjct: 144 LLCVDTLDPALA-EAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGF 202

Query: 59  DIVPAENGDKFLSMLPPWH 77
            I    + D  +S LP +H
Sbjct: 203 GIDLNPD-DVIVSWLPLYH 220

Length = 4334

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLY----DIVPAENGDKFLSMLPP 75
                A   YTSG+T  P GVM++H+N+     Q+ S Y      VP  +    +S LP 
Sbjct: 158 DLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDT-TVVSWLPF 216

Query: 76  WH 77
           +H
Sbjct: 217 YH 218

Length = 578

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 214  KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS--VGHPINHT 271
            K  V GG +LP  +     A G+ +   YG TE++  +   +       +  +G PI + 
Sbjct: 3314 KRIVCGGEALPADLQQQVFA-GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANR 3372

Query: 272  EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW------LNTGDI 325
               I+D     V P G+ G + + G  + +GY   P  T +    D +        TGD+
Sbjct: 3373 ACYILDGSLEPV-PVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDL 3431

Query: 326  GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 385
                         R  GV+   GR  D  V   G  +E  E+E   L    +R+ VV+  
Sbjct: 3432 A----------RYRADGVIEYIGRV-DHQVKIRGFRIELGEIEARLLEHPWVREAVVLAV 3480

Query: 386  DQRRPGAIIVPDKEE 400
            D R+  A +VP+ E 
Sbjct: 3481 DGRQLVAYVVPEDEA 3495

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLL 51
           +  D++A  +YTSG+TG PKGV ++H  L 
Sbjct: 653 LDPDNLAYVIYTSGSTGQPKGVAISHGALA 682

Length = 3956

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 25 DDIATYVYTSGTTGNPKGVMLTHKNL 50
          DD+A  V TSGTTG PKG MLT   L
Sbjct: 35 DDVALVVATSGTTGTPKGAMLTAAAL 60

Length = 358

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLH 52
           DD A ++Y+SG+TG PKGV+ TH N   
Sbjct: 161 DDPAFWLYSSGSTGMPKGVVHTHSNPYW 188

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 55
            DD+A  +YTSG+TG PKGV + H+N    ++
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQ 135

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 242 YGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ 298
           YG +E    S              S+G P+  T+  ++DA    V P G  G + + G+ 
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTP-SIGRPLAGTQAYVLDAHLQPV-PVGVPGELYIGGAG 303

Query: 299 VMQGYFKNPSATKQALDEDGWLN--------TGDIGWIAPHHSRGRSRRCGGVLVLEGRA 350
           V +GY   P  T +    + +          TGD+            RR  G L   GR 
Sbjct: 304 VARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLV----------RRRADGQLEYLGRI 353

Query: 351 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPD 397
            D + +  G  +E  E+E A      + + VV+        R+  A IV D
Sbjct: 354 DDQVKVR-GFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVAD 403

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 32  YTSGTTGNPKGVMLTHKN-LLHQIRS-LYDIVPAENGDKFLSMLPPWHV 78
           YTSGTTGNPKG + +H++ +LH   + L D +     D  L ++P +HV
Sbjct: 183 YTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHV 231

Length = 539

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 22   IGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLS 71
            +   ++A  +YTSG+TG PKG    H  L   L   +  Y +  A+   +F S
Sbjct: 1715 LAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTS 1767

Length = 3956

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 26/166 (15%)

Query: 217 VSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAA--RRPTCNVLGS-------VGH 266
           +  GGS      +        +V+ GYGLTE+SPV+     +     L            
Sbjct: 275 LVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 334

Query: 267 PINH--TEIKIVDAETNEVLPAGSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 322
            +      +++ D E   V P   K +  V+++G  +  GY+ N  AT+ AL  DG+  T
Sbjct: 335 GLPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 393

Query: 323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 368
           GDI                G + ++ R KD I    GE +  ++LE
Sbjct: 394 GDIAVWDEE----------GYVEIKDRLKDLIKSG-GEWISSVDLE 428

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 6   PILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN 65
            +    +      Y     DD     +TSGTTG PKGV ++H  L+ Q  +   IV    
Sbjct: 154 MLKQRALGTTELDY-AWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGE 212

Query: 66  GDKFLSMLPPWHV 78
            D +L   P  H+
Sbjct: 213 DDVYLHTAPLCHI 225

Length = 563

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 10  PVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK----NLLHQIRSLYDIVPAEN 65
           P  AG+ +    + +DD++   YTSG+T  P GV +TH+    NL+  I S+  +    +
Sbjct: 178 PDSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTH 237

Query: 66  GDKFLSMLPPWH 77
           G   +S LP +H
Sbjct: 238 G---VSWLPLYH 246

Length = 612

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
            +I  + ++  ++TSGT+G PKGVML+ +NL     +   +   +    FL   P +H+
Sbjct: 130 PSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHI 188

Length = 488

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTH 47
           DD   + +TSGTTG PK  +LTH
Sbjct: 163 DDPCWFFFTSGTTGRPKAAVLTH 185

Length = 528

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 25   DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLS 71
            +++A  +YTSG+TG PKGV ++H  L+   ++    Y++ PA+   +F+S
Sbjct: 2146 ENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMS 2195

Length = 5163

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 77
           DD A  +YTSGTTG PKG  ++ +  L     L   +  +  D+  + +P +H
Sbjct: 87  DDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYH 139

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 26  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
             A Y+YTSGTTG PK   ++H  +L Q   +  +      D   + LP +H 
Sbjct: 143 STALYIYTSGTTGLPKAARISHLRVL-QCSGMLSLCGVTADDVVYTTLPLYHS 194

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 26/143 (18%)

Query: 274 KIVDAETNEVLPA-GSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGWIA 329
            ++D + +EV P  G  G +   G  V  GY+K+P  T +   E DG  +   GD   + 
Sbjct: 199 VVLDEDGSEVPPGSGEVGWIARGGR-VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVE 257

Query: 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 389
                       G + L GR    I  + GE V P E+EEA      +   +V+G    R
Sbjct: 258 A----------DGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPDER 306

Query: 390 PGAIIV----------PDKEEVL 402
            G  +V           D  E+ 
Sbjct: 307 WGQRVVAVVQLRAGAGLDLAELR 329

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 275 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ-----------------ALDED 317
           IVD ET   LP G  G + + G+ +  GY+  P  T                   A D+ 
Sbjct: 404 IVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA 463

Query: 318 GWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS 375
            W+ TGD G +              G L + GR KD +++  G N  P +LE  A  ++
Sbjct: 464 LWVRTGDYGVYF------------DGELYITGRVKDLVIID-GRNHYPQDLEYTAQEAT 509

Length = 631

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 21/153 (13%)

Query: 235 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 294
           G+ +  G G TE      + R     LG++G  +   EI++V A        G +G + V
Sbjct: 286 GIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVV-APDGTTAGPGVEGDLWV 344

Query: 295 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC---GGVLVLEGRAK 351
           RG  + +GY+  P +    +  +GWL+T             R R C    G +    RA 
Sbjct: 345 RGPAIAKGYWNRPDSP---VANEGWLDT-------------RDRVCIDSDGWVTYRCRAD 388

Query: 352 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 384
           DT V+  G NV+P E+E   +    + +  V+ 
Sbjct: 389 DTEVIG-GVNVDPREVERLIIEDEAVAEAAVVA 420

Length = 705

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 33/167 (19%)

Query: 262 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDGW 319
           GSVG  +    + I D + NE LPAG  G V     ++   Y  +P  T  A       W
Sbjct: 323 GSVGRSVLGD-LHICDDDGNE-LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFW 380

Query: 320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 379
              GD+G +             G L L  R K  +++S G N+ P E E A      +  
Sbjct: 381 TTVGDLGSVDED----------GYLYLADR-KSFMIISGGVNIYPQETENALTMHPAVHD 429

Query: 380 IVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADA-----SELSKE 421
           + VIG          VPD E   M  +  +++          EL++E
Sbjct: 430 VAVIG----------VPDPE---MGEQVKAVIQLVEGIRGSDELARE 463

Length = 501

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 26  DIATYVYTSGTTGNPKGVMLTHKNLL 51
           D A Y+YTSGTTG PK  +++H+  L
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWL 107

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 13/65 (20%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLL----HQIRSLYDIVPAENGDKFL------SMLP 74
           DD A  +YTSGTTG PKG + TH          I   +D+ P   GD+ L       M+ 
Sbjct: 100 DDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKP---GDRLLWITDMGWMMG 156

Query: 75  PWHVY 79
           PW V 
Sbjct: 157 PWLVL 161

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 21  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-YDIVPAENGDKFLSMLPPWH 77
               DDIA   Y+SG+T  P+GV++TH+ L+  +R++ +D +    GD+ +S LP +H
Sbjct: 172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 23   GSDDIATYVYTSGTTGNPKGVMLTHKNLL 51
            G D++A  +YTSG+TG PKGVM+  + +L
Sbjct: 3867 GPDNLAYVIYTSGSTGLPKGVMVEQRGML 3895

Length = 4334

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 23/150 (15%)

Query: 265 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WL 320
           G P+ + +  ++D +  +  P    G + + G  V  GY+ +P  T +       G    
Sbjct: 303 GKPLPNQKFYVLDEDGRDC-PDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLY 361

Query: 321 NTGDIGWIAPHHSRGRSRRCGGVLVLE--GRAKDTIVLSTGENVEPLELEEAALRSSLIR 378
            TGD          GR R  G    +E  GR  D  V   G  VE  E+E A  R   ++
Sbjct: 362 RTGD---------LGRYRPDG---TIEFLGR-ADHQVKIRGYRVELGEIEAALARHPGVQ 408

Query: 379 QIVVIGQDQRRPGAI---IVPDKEEVLMAA 405
           + VV+        A+   +V +    + AA
Sbjct: 409 RAVVVVVGDGGAKALAAFVVAEDGAAVDAA 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 13/17 (76%), Positives = 15/17 (88%)

Query: 32  YTSGTTGNPKGVMLTHK 48
           YTSGTTGNPKGV+  H+
Sbjct: 189 YTSGTTGNPKGVVYHHR 205

Length = 545

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.98
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.95
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.95
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.83
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.76
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.67
PRK09188	365	serine/threonine protein kinase; Provisional	99.6
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.29
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.15
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.59
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	98.55
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.39
PLN02249	597	indole-3-acetic acid-amido synthetase	97.96
PLN02247	606	indole-3-acetic acid-amido synthetase	97.94
PLN02620	612	indole-3-acetic acid-amido synthetase	97.82
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	92.99

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=3.1e-59  Score=480.74  Aligned_cols=393  Identities=37%  Similarity=0.629  Sum_probs=338.9

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC-CCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY-   96 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~-   96 (461)
                      ....++|+|.|+|||||||.||||++||+|+++++..+...+. +.++|++++++|++|++...+ ....++.|.++.+ 
T Consensus       186 ~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~  265 (613)
T COG1022         186 APPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK  265 (613)
T ss_pred             CCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEec
Confidence            3567899999999999999999999999999999999999997 999999999999999999987 5566777777776 


Q ss_pred             cchhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           97 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        97 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                      .+++.+++++++.+||+++++|.+|+.+.+.+.+...+....++.+-+++......  .+.+                  
T Consensus       266 ~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~--~~~~------------------  325 (613)
T COG1022         266 EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK--KISR------------------  325 (613)
T ss_pred             CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--HHHh------------------
Confidence            47999999999999999999999999999999888766665554333333322111  0000                  


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  255 (461)
                              +..+....+....+++|+++++++.+| .++.+++||+++++++..+++..|++++++||+||++..+++++
T Consensus       326 --------~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~  397 (613)
T COG1022         326 --------ALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNP  397 (613)
T ss_pred             --------hhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEcc
Confidence                    011112223334488999999999998 57999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCC
Q 012526          256 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  335 (461)
Q Consensus       256 ~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~  335 (461)
                      +.....+++|.|+|+++++|.|           .|||+|+||++|.|||++|+.|++.|++||||+|||+|.+++     
T Consensus       398 ~~~~~~gtvG~p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~-----  461 (613)
T COG1022         398 PDRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE-----  461 (613)
T ss_pred             ccCcccCCcCCcCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcC-----
Confidence            9999999999999999999998           599999999999999999999999999999999999999999     


Q ss_pred             cccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeEEEEEcChHHHHHHHHHcCCCcC-C
Q 012526          336 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHA-D  414 (461)
Q Consensus       336 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~-~  414 (461)
                           +|++++.||++|+|++++|++|.|+.||+.+.++|.|.+++|+|..+..++|+||++.+.+..++..++.... +
T Consensus       462 -----~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~  536 (613)
T COG1022         462 -----DGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDALEKWAESLNKVISAS  536 (613)
T ss_pred             -----CCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCcceEEEEeCCHHHHHHHHHhccccccCC
Confidence                 8999999999999999999999999999999999999999999988899999999999999988887764432 2


Q ss_pred             -ccccCcHHHHHHHHHHHHHHhccCC--CccccEEEecCCCCCCCCcccC
Q 012526          415 -ASELSKEKTISLLYGELRKWTSKCS--FQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       415 -~~~~~~~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                       .+-....++++....++.+......  +++++|.+++++|+.++|++|+
T Consensus       537 ~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~  586 (613)
T COG1022         537 REELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTP  586 (613)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCcccc
Confidence             2234567777777777777665544  9999999999999999999884

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-59  Score=476.29  Aligned_cols=418  Identities=34%  Similarity=0.521  Sum_probs=349.9

Q ss_pred             cccccccccccCcccCC-CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhc---CCCCCcEEEEECCh
Q 012526            3 FSLPILTPVIAGKHYKY-ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIV---PAENGDKFLSMLPP   75 (461)
Q Consensus         3 ~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~---~~~~~d~~~~~~p~   75 (461)
                      +|+..+.+......+.+ .+..|+|.+.|.|||||||.||||++||+|+++.+....   ...   .....|++++++|+
T Consensus       232 ~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPL  311 (691)
T KOG1256|consen  232 YSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPL  311 (691)
T ss_pred             EEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcH
Confidence            34455555444455555 578899999999999999999999999999988655321   111   12346999999999


Q ss_pred             hhhHHHhhhhhhhccCeEEEEc--chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHH
Q 012526           76 WHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  153 (461)
Q Consensus        76 ~~~~~~~~~~~~l~~G~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (461)
                      .|++...+-...++.|+++.+.  ++..+.+++++.+||++.++|.+|.++.+..++...++..+++.+..++.......
T Consensus       312 AHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~  391 (691)
T KOG1256|consen  312 AHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEH  391 (691)
T ss_pred             HHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            9999999988888999999986  67888999999999999999999999999999998887777766655544433311


Q ss_pred             HHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeccCCCchhHHHHHH
Q 012526          154 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYE  232 (461)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg~~l~~~~~~~~~  232 (461)
                          .+..|.+.+                           ...+++++++++++..|| ..|.+++|++|+++++..+++
T Consensus       392 ----~~~~G~~~~---------------------------~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r  440 (691)
T KOG1256|consen  392 ----RLMKGKSRS---------------------------RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFR  440 (691)
T ss_pred             ----HhhCCCCcc---------------------------cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHH
Confidence                122222210                           356899999999999998 479999999999999988887


Q ss_pred             Hh-CCeeeeecccCCCccceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhc
Q 012526          233 AI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  311 (461)
Q Consensus       233 ~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~  311 (461)
                      .. |++|+++||+||+++.++...+.+...+++|.|.|+++++++|......-+.|..|||+|+|+++|+||++||+.|+
T Consensus       441 ~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~  520 (691)
T KOG1256|consen  441 AALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTA  520 (691)
T ss_pred             HhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHh
Confidence            75 79999999999999766666666668999999999999999997666666777799999999999999999999999


Q ss_pred             cccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC-CCee
Q 012526          312 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRP  390 (461)
Q Consensus       312 ~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~-~~~~  390 (461)
                      +.|++|||++|||+|++++          +|.++|.||+++++++++|++|.|+.||++..+.+.|.+.+|.|.+ +..+
T Consensus       521 e~ideDGWLhTGDiG~~~p----------~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~L  590 (691)
T KOG1256|consen  521 EAIDEDGWLHTGDIGEWDP----------NGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFL  590 (691)
T ss_pred             hhhccccccccccceeECC----------CccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcE
Confidence            9999999999999999999          9999999999999999999999999999999999999999999997 6789


Q ss_pred             EEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhc----cCCCccccEEEecCCCCCCCCcccC
Q 012526          391 GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       391 ~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      +|+|+++.+...+.+..+++..+-..-....++++.+...|-++..    +..+++++|++.+++|+.+||.||+
T Consensus       591 vaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltP  665 (691)
T KOG1256|consen  591 VAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTP  665 (691)
T ss_pred             EEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccch
Confidence            9999999998888887666653222335667888888888888765    3348999999999999999999985

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.3e-56  Score=479.07  Aligned_cols=399  Identities=29%  Similarity=0.457  Sum_probs=315.1

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhc-----CCCCCcEEEEECChhhhHHHhhhhhhhccCeEEE
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV-----PAENGDKFLSMLPPWHVYERACGYFIFSRGIELM   95 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~   95 (461)
                      ...++|+++|+|||||||.||||++||++++..+......+     ++.++|++++++|++|++++...+..+..|++++
T Consensus       219 ~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~  298 (666)
T PLN02614        219 IKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIG  298 (666)
T ss_pred             CCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEE
Confidence            34679999999999999999999999999988776654433     5788999999999999999876666678899988


Q ss_pred             Ec--chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           96 YT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        96 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      +.  ++..+++.+++++||+++++|.+|..++............+++.+..+.....     +.....+..         
T Consensus       299 ~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~---------  364 (666)
T PLN02614        299 FWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYK-----FGNMKKGQS---------  364 (666)
T ss_pred             EeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH-----HHHHHcCCC---------
Confidence            74  67889999999999999999999999987654432222211111111100000     000000000         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeccCCCchhHHHHHHHh-CCeeeeecccCCCccce
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVI  251 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg~~l~~~~~~~~~~~-~~~v~~~YG~tE~~~~~  251 (461)
                                       ......+.+.+.++++++.++ .+|.+++||+++++++.++.+.+ ++.++++||+||++...
T Consensus       365 -----------------~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  427 (666)
T PLN02614        365 -----------------HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGT  427 (666)
T ss_pred             -----------------CcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhhe
Confidence                             001122455667777777774 78999999999999888888887 58999999999997655


Q ss_pred             eccCCCC-CCccccccCCCCeEEEEEeC-C-CCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEee
Q 012526          252 AARRPTC-NVLGSVGHPINHTEIKIVDA-E-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  328 (461)
Q Consensus       252 ~~~~~~~-~~~~~~G~~~~~~~i~i~d~-~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~  328 (461)
                      +...+.. ...+++|+|.|+++++|+|. + .+.++++|+.|||+|+||+++.|||++|+.|++.| .+|||+|||+|++
T Consensus       428 ~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~  506 (666)
T PLN02614        428 FVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEW  506 (666)
T ss_pred             eeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEE
Confidence            5444332 35689999999999999983 3 34678999999999999999999999999999999 5899999999999


Q ss_pred             ccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC-CCeeEEEEEcChHHHHHHHHH
Q 012526          329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       329 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~-~~~~~a~vv~~~~~~~~~~~~  407 (461)
                      ++          ||+++|.||.||+|++++|++|+|.+||++|.+||+|.+++|+|.+ ++.++|+||++.+.+..++++
T Consensus       507 d~----------dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~  576 (666)
T PLN02614        507 QP----------NGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAE  576 (666)
T ss_pred             cC----------CCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHh
Confidence            99          8999999999999997689999999999999999999999999998 578999999999999999988


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhc----cCCCccccEEEecCCCCCCCCcccC
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      +++...........++++.+.+.+.+...    +..++|++|++++++|+++||+||+
T Consensus       577 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTp  634 (666)
T PLN02614        577 NGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTP  634 (666)
T ss_pred             cCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCH
Confidence            87652211224557788888888766522    3338999999999999999999984

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=8.4e-57  Score=459.23  Aligned_cols=333  Identities=31%  Similarity=0.478  Sum_probs=294.4

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhh-hccCeEEEE-
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY-   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~-l~~G~~~~~-   96 (461)
                      ......+|+++++|||||||.||||++||+++..+.........++..|+.++.+|++|.+|+...+.+ +..|.++++ 
T Consensus       178 ~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~  257 (537)
T KOG1176|consen  178 IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICL  257 (537)
T ss_pred             cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEEC
Confidence            344566999999999999999999999999998887776666777889999999999999999988775 556666665 


Q ss_pred             --cchhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           97 --TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        97 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                        +++..+++.|++|++|++.++|.++..|++.....                                           
T Consensus       258 ~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~-------------------------------------------  294 (537)
T KOG1176|consen  258 RKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVK-------------------------------------------  294 (537)
T ss_pred             CCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccC-------------------------------------------
Confidence              47899999999999999999999999887743111                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC-CeeeeecccCCCcccee
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIA  252 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~-~~v~~~YG~tE~~~~~~  252 (461)
                                                      ...+.+++.+.+||++++++. +++.+.++ ..+.++||+||+++.++
T Consensus       295 --------------------------------~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~  342 (537)
T KOG1176|consen  295 --------------------------------KYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLIT  342 (537)
T ss_pred             --------------------------------cccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCcee
Confidence                                            145666799999999998765 77778887 88999999999998777


Q ss_pred             ccCCCC-CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          253 ARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       253 ~~~~~~-~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      .+.... ..++++|.+++++.+.+.+ +++..+++++.||||++|++++.||++||+.|++.|+++|||+|||+|++|+ 
T Consensus       343 ~~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~-  420 (537)
T KOG1176|consen  343 SNDWGPERKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDE-  420 (537)
T ss_pred             ecCCCccCcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcC-
Confidence            766555 4789999999988888777 8899999999999999999999999999999999998789999999999999 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~  407 (461)
                               ||+++|.+|.+|+||. +|++|+|.|||++|..||.|.||+|+|.+|+.    ++|+||.+++        
T Consensus       421 ---------DG~l~IvdR~KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g--------  482 (537)
T KOG1176|consen  421 ---------DGYLYIVDRSKDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKG--------  482 (537)
T ss_pred             ---------CCeEEEecchhhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCC--------
Confidence                     9999999999999997 99999999999999999999999999998764    5699998753        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCcc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  459 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~  459 (461)
                              ..+++++++++++++|+.|+     .++++.|+++.|+..|||+
T Consensus       483 --------~~lte~di~~~v~k~l~~y~-----~~~~V~Fvd~lPKs~~GKi  521 (537)
T KOG1176|consen  483 --------STLTEKDIIEYVRKKLPAYK-----LPGGVVFVDELPKTPNGKI  521 (537)
T ss_pred             --------CcCCHHHHHHHHHhhCChhh-----ccCeEEEeccCCCCCcchH
Confidence                    67899999999999999976     8899999999999999996

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.8e-55  Score=468.33  Aligned_cols=395  Identities=27%  Similarity=0.378  Sum_probs=314.6

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhc--CCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV--PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~   97 (461)
                      ....++|+++|+|||||||.||||++||+|+++++.......  ...+.|++++++|++|++++...+.+++.|+++++.
T Consensus       299 ~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~  378 (746)
T PTZ00342        299 QNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIW  378 (746)
T ss_pred             CCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEe
Confidence            345789999999999999999999999999998876654322  233568999999999999998777889999999874


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.|++++||+++++|.+|..++..........+..++.+..++.......      ..+.            
T Consensus       379 ~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~------------  440 (746)
T PTZ00342        379 SKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSN------NNGG------------  440 (746)
T ss_pred             CCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh------hcCC------------
Confidence              58889999999999999999999999988765544333333333322222221110      0000            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHhhcC-CceeEEeccCCCchhHHHHHH-HhCCeeeeecccCCCccce
Q 012526          176 VALIDWLWARIICAILWPLHLLAEK--LVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVI  251 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~~i~~gg~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~  251 (461)
                                        ...+...  .+++++++.++ .+|.+++||+++++++.+++. .+|+.++++||+||+++..
T Consensus       441 ------------------~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~  502 (746)
T PTZ00342        441 ------------------FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPI  502 (746)
T ss_pred             ------------------cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCccccee
Confidence                              0011111  15677777774 689999999999999866664 5799999999999998776


Q ss_pred             eccCCCCCCccccccCC-CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeecc
Q 012526          252 AARRPTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  330 (461)
Q Consensus       252 ~~~~~~~~~~~~~G~~~-~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~  330 (461)
                      +...+.....+++|.|+ |+++++++|.+++...+.+..|||+++||+++.|||++|+.|++.|++||||+|||+|++++
T Consensus       503 ~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~  582 (746)
T PTZ00342        503 FVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINK  582 (746)
T ss_pred             eeccCCCCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECC
Confidence            66666566778999998 99999999865555555556899999999999999999999999998899999999999999


Q ss_pred             CCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC-CCeeEEEEEcChHHHHHHHHHcC
Q 012526          331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLS  409 (461)
Q Consensus       331 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~-~~~~~a~vv~~~~~~~~~~~~~~  409 (461)
                                ||+++|+||.||+|++++|++|+|.+||+++.+||.|.+|+|+|.+ .+.++|+|+++.+.+..++++.+
T Consensus       583 ----------dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~  652 (746)
T PTZ00342        583 ----------NGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDN  652 (746)
T ss_pred             ----------CCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcC
Confidence                      8999999999999998789999999999999999999999999986 56899999999999999887654


Q ss_pred             C------CcCCc------cccCcHHHHHHHHHHHHHHhc----cCCCccccEEEecCCCCCCCCcccC
Q 012526          410 I------VHADA------SELSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       410 ~------~~~~~------~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      +      ...+.      ..+...++++++.+.+.+...    +..++|++|++++++|++ +|+||+
T Consensus       653 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~-~~~lTp  719 (746)
T PTZ00342        653 MLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDT-NNYLTP  719 (746)
T ss_pred             CccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCC-CCccCh
Confidence            2      22111      123455678889988888822    233999999999999999 568884

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.1e-54  Score=461.04  Aligned_cols=399  Identities=28%  Similarity=0.449  Sum_probs=310.0

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC-----CCCCcEEEEECChhhhHHHhhhhhhhccCeEEE
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-----AENGDKFLSMLPPWHVYERACGYFIFSRGIELM   95 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~-----~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~   95 (461)
                      ...++|+++|+|||||||.||||++||++++..+......++     +.++|++++++|++|++++...+.++..|++++
T Consensus       216 ~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~  295 (660)
T PLN02861        216 PKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIG  295 (660)
T ss_pred             ccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEE
Confidence            346799999999999999999999999999988776655443     468899999999999999877666889999988


Q ss_pred             Ec--chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           96 YT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        96 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      +.  ++..+++.+++++||+++++|.+|..+++...........+++.+.++.........  .   .+.          
T Consensus       296 ~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~--~---~~~----------  360 (660)
T PLN02861        296 FWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNL--R---KGL----------  360 (660)
T ss_pred             EeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH--h---cCC----------
Confidence            74  678899999999999999999999999876655443333333322222211111100  0   000          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeccCCCchhHHHHHHHhCC-eeeeecccCCCccce
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVI  251 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg~~l~~~~~~~~~~~~~-~v~~~YG~tE~~~~~  251 (461)
                                      .........+.++++++++.++ .+|.+++||+++++++.++.+.++. .++++||+||+++.+
T Consensus       361 ----------------~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~  424 (660)
T PLN02861        361 ----------------KQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGC  424 (660)
T ss_pred             ----------------CCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhce
Confidence                            0000112345567777888885 6899999999999999888887764 799999999997765


Q ss_pred             eccCCC-CCCccccccCCCCeEEEEEeC-CCC-CcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEee
Q 012526          252 AARRPT-CNVLGSVGHPINHTEIKIVDA-ETN-EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  328 (461)
Q Consensus       252 ~~~~~~-~~~~~~~G~~~~~~~i~i~d~-~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~  328 (461)
                      +..... ....+++|+|+++++++++|. +.+ ..+++++.|||+|+||+++.|||++|+.|.+.| .+|||+|||+|++
T Consensus       425 ~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~  503 (660)
T PLN02861        425 FTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEW  503 (660)
T ss_pred             eecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEE
Confidence            543332 234689999999999999983 333 444566789999999999999999999999999 5899999999999


Q ss_pred             ccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC-CeeEEEEEcChHHHHHHHHH
Q 012526          329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-RRPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       329 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~-~~~~a~vv~~~~~~~~~~~~  407 (461)
                      ++          ||+++|.||+||+|++++|++|+|.+||++|.+||.|.+|+|+|.++ +.+.|+||+..+.+..++++
T Consensus       504 d~----------dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~  573 (660)
T PLN02861        504 QP----------NGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAAN  573 (660)
T ss_pred             CC----------CCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHHH
Confidence            99          89999999999999976899999999999999999999999999984 67899999999988888887


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhc----cCCCccccEEEecCCCCCCCCcccC
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      .+............++++.+.+++.+.+.    +..++|++|++.+++|+.+||+||+
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~  631 (660)
T PLN02861        574 NNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITP  631 (660)
T ss_pred             cCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCH
Confidence            75421111112223455666666665533    4448999999999999999999984

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.6e-54  Score=460.83  Aligned_cols=397  Identities=29%  Similarity=0.431  Sum_probs=314.7

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--c
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--A   98 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--~   98 (461)
                      ...++|+++|+|||||||.||||++||+++..++.+....+++.++|++++++|++|++++...+.++..|+++++.  +
T Consensus       217 ~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~  296 (651)
T PLN02736        217 PPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGD  296 (651)
T ss_pred             CCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCC
Confidence            45789999999999999999999999999999988888888899999999999999999998777789999999875  5


Q ss_pred             hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHH
Q 012526           99 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  178 (461)
Q Consensus        99 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (461)
                      +..+++.++++++|+++++|.+|..+.+............++.+.........     ..+                   
T Consensus       297 ~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------------------  352 (651)
T PLN02736        297 NLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKK-----QAL-------------------  352 (651)
T ss_pred             HHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-----HHH-------------------
Confidence            67899999999999999999999999887654433333222211111000000     000                   


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeccCCCchhHHHHH-HHhCCeeeeecccCCCccceeccCC
Q 012526          179 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg~~l~~~~~~~~-~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                ....+.....+.+.+++++..++ .+|.+++||+++++++.+++ +.+++.+++.||+||+++.++....
T Consensus       353 ----------~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~  422 (651)
T PLN02736        353 ----------ENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDE  422 (651)
T ss_pred             ----------HcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCC
Confidence                      00001112334556667777775 68999999999999875544 4679999999999999877666555


Q ss_pred             CCCCccccccCCCCeEEEEEeCCCCC---cCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCC
Q 012526          257 TCNVLGSVGHPINHTEIKIVDAETNE---VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  333 (461)
Q Consensus       257 ~~~~~~~~G~~~~~~~i~i~d~~~~~---~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~  333 (461)
                      .....+++|+|.|+++++|+|.+++.   ...++..|||+|+||+++.||+++|+.|++.|+++|||+|||+|++++   
T Consensus       423 ~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~---  499 (651)
T PLN02736        423 GDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP---  499 (651)
T ss_pred             CCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcC---
Confidence            55667899999999999999854332   223445799999999999999999999999998899999999999999   


Q ss_pred             CCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC-CCeeEEEEEcChHHHHHHHHHcCCCc
Q 012526          334 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVH  412 (461)
Q Consensus       334 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~-~~~~~a~vv~~~~~~~~~~~~~~~~~  412 (461)
                             ||.++|+||.||+|++++|++|+|.+||++|.+||.|.+|+|+|.. .+.+.|+||++++.+..+++...+..
T Consensus       500 -------dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~  572 (651)
T PLN02736        500 -------GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKY  572 (651)
T ss_pred             -------CCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHHHHHcCCCc
Confidence                   8999999999999997679999999999999999999999999976 46789999999988887777665543


Q ss_pred             CCccc-cCcHHHHHHHHHHHHHHhcc----CCCccccEEEecCCCCCCCCcccC
Q 012526          413 ADASE-LSKEKTISLLYGELRKWTSK----CSFQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       413 ~~~~~-~~~~~l~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      .+..+ ...+++++.+.+.|.+++..    ..++|++|.+++++|+++||++|.
T Consensus       573 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~  626 (651)
T PLN02736        573 EDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTP  626 (651)
T ss_pred             cCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCCh
Confidence            22222 34467777777777776432    227999999999999999999874

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=9.3e-54  Score=461.11  Aligned_cols=402  Identities=28%  Similarity=0.411  Sum_probs=314.1

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhc-CCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcch
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV   99 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~   99 (461)
                      ...++|+++|+|||||||.||||++||++++.++......+ ++.++|++++++|++|++++...+..+..|+++.+..+
T Consensus       246 ~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~  325 (696)
T PLN02387        246 LPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSP  325 (696)
T ss_pred             CCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECCh
Confidence            34679999999999999999999999999998887765543 57889999999999999998876666777777765322


Q ss_pred             -----------hhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526          100 -----------RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  168 (461)
Q Consensus       100 -----------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                                 ..++..+++++||++.++|.++..+.+.............+.+.+........     . ..+...   
T Consensus       326 ~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~-----~-~~~~~~---  396 (696)
T PLN02387        326 LTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLA-----A-IEGSWF---  396 (696)
T ss_pred             hhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----H-hccCCc---
Confidence                       23456899999999999999999998765433222222222111111110000     0 000000   


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhc-CCceeEEeccCCCchhHHHHHHH-hCCeeeeecccCC
Q 012526          169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAI-GISKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTE  246 (461)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~i~~gg~~l~~~~~~~~~~-~~~~v~~~YG~tE  246 (461)
                       ..                   ......+++.+.+++++..+ +.+|.+++||+++++++.++.+. +|+.++++||+||
T Consensus       397 -~~-------------------~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TE  456 (696)
T PLN02387        397 -GA-------------------WGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTE  456 (696)
T ss_pred             -cc-------------------ccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhh
Confidence             00                   00122356777888888888 46899999999999999877775 6999999999999


Q ss_pred             CccceeccCCCCCCccccccCCCCeEEEEEeC-CCCCcC--CCCCceEEEEecCCccccccCCchhhcccc--CCCC--c
Q 012526          247 SSPVIAARRPTCNVLGSVGHPINHTEIKIVDA-ETNEVL--PAGSKGIVKVRGSQVMQGYFKNPSATKQAL--DEDG--W  319 (461)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~-~~~~~~--~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f--~~~~--~  319 (461)
                      ++..++.........+++|.|.++++++|+|. +++..+  .++..|||+|+||+++.|||++|+.|.+.|  +++|  |
T Consensus       457 t~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W  536 (696)
T PLN02387        457 TCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRW  536 (696)
T ss_pred             cccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCce
Confidence            98777666555556789999999999999994 433322  344579999999999999999999999998  3345  9


Q ss_pred             ccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC-CCeeEEEEEcCh
Q 012526          320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDK  398 (461)
Q Consensus       320 ~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~-~~~~~a~vv~~~  398 (461)
                      |+|||+|++++          ||+++|.||.||+|++++|++|+|.+||++|.+||.|.+++|+|.+ ++.++|+|++++
T Consensus       537 ~~TGDig~~d~----------dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~  606 (696)
T PLN02387        537 FYTGDIGQFHP----------DGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQ  606 (696)
T ss_pred             eecCceEEECC----------CCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCH
Confidence            99999999999          8999999999999998679999999999999999999999999998 778999999999


Q ss_pred             HHHHHHHHHcCCCcCCccc-cCcHHHHHHHHHHHHHHhcc----CCCccccEEEecCCCCCCCCcccC
Q 012526          399 EEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTSK----CSFQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      +.+..+++++++...+..+ ....++++.+.+.+.+....    ..++|++|++++++|+++||+||+
T Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~  674 (696)
T PLN02387        607 QALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTA  674 (696)
T ss_pred             HHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCCh
Confidence            9999888887765433222 45678888888888887442    228999999999999999999984

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-54  Score=421.28  Aligned_cols=414  Identities=28%  Similarity=0.417  Sum_probs=344.1

Q ss_pred             cccccccccccCcccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhc-CCCCCcEEEEECChhhhHHH
Q 012526            3 FSLPILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV-PAENGDKFLSMLPPWHVYER   81 (461)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~   81 (461)
                      .++..+.+.......+..+..|+|+|+|+|||||||.||||+++|+|+++.+....... .+.+.|+++.++|+.|++.+
T Consensus       215 ~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl  294 (678)
T KOG1180|consen  215 ISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILEL  294 (678)
T ss_pred             EEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHH
Confidence            45555555544444555555889999999999999999999999999999988876665 68899999999999999999


Q ss_pred             hhhhhhhccCeEEEEcchhhHH-----------HHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Q 012526           82 ACGYFIFSRGIELMYTAVRNLK-----------DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRIS  150 (461)
Q Consensus        82 ~~~~~~l~~G~~~~~~~~~~~~-----------~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (461)
                      ..-+.+++.|+.+-+.++..+.           .++...+||++.++|.+|.++.++.-......+.+.+-+-       
T Consensus       295 ~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF-------  367 (678)
T KOG1180|consen  295 TAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLF-------  367 (678)
T ss_pred             HHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHH-------
Confidence            9888899999999886554433           3567899999999999999999887665544444332110       


Q ss_pred             HHHHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeccCCCchhHHH
Q 012526          151 FAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDL  229 (461)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg~~l~~~~~~  229 (461)
                           +..+..             -.++.+         .--+-..+++.++|++++..+| .+|.+++||++++++.++
T Consensus       368 -----~~aY~~-------------K~~~~~---------~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQr  420 (678)
T KOG1180|consen  368 -----WTAYER-------------KLSLIE---------RNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQR  420 (678)
T ss_pred             -----HHHHHH-------------HHHHHh---------ccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHH
Confidence                 000000             000000         0112345789999999999997 589999999999999999


Q ss_pred             HHHHh-CCeeeeecccCCCccceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCC--ceEEEEecCCccccccCC
Q 012526          230 FYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRGSQVMQGYFKN  306 (461)
Q Consensus       230 ~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~--~Gel~v~~~~~~~gy~~~  306 (461)
                      +.... .+++.++||.||++..++...+.+...+.+|.|++.++++++|-+.+.--+.+.  .|||+|+|+++..||+++
T Consensus       421 F~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn  500 (678)
T KOG1180|consen  421 FMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKN  500 (678)
T ss_pred             HHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCC
Confidence            99875 779999999999999999888888888999999999999999965555444444  899999999999999999


Q ss_pred             chhhccccCC-CC--cccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEE
Q 012526          307 PSATKQALDE-DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI  383 (461)
Q Consensus       307 ~~~~~~~f~~-~~--~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~  383 (461)
                      |+.|++.|.. +|  ||+|||+|++.+          ||.+.|.+|++|.+|+.+|+.|+++-+|+++...|.|...+|+
T Consensus       501 ~ekT~e~ft~~~G~~WF~TGDIGe~~p----------dG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvy  570 (678)
T KOG1180|consen  501 EEKTKEDFTVEDGQRWFRTGDIGEFHP----------DGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVY  570 (678)
T ss_pred             hhhhhhhceecCCcEEEeccccceecC----------CCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEe
Confidence            9999999977 88  999999999999          9999999999999999999999999999999999999999999


Q ss_pred             eCC-CCeeEEEEEcChHHHHHHHHHcCCCcCCccc-cCcHHHHHHHHHHHHHHhccCC----CccccEEEecCCCCCCCC
Q 012526          384 GQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTSKCS----FQIGPIHVVDEPFTVNFL  457 (461)
Q Consensus       384 ~~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~g  457 (461)
                      +.+ +..++++|||++..+...+++.++....-.+ ....++++.+...|.+......    |.+.+|.+.+++||++||
T Consensus       571 Ad~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenG  650 (678)
T KOG1180|consen  571 ADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENG  650 (678)
T ss_pred             cccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCcc
Confidence            985 5688999999999999999999888765444 5678888999999888876544    888999999999999999


Q ss_pred             ccc
Q 012526          458 CLA  460 (461)
Q Consensus       458 ~~~  460 (461)
                      .+|
T Consensus       651 lvT  653 (678)
T KOG1180|consen  651 LVT  653 (678)
T ss_pred             ccH
Confidence            987

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3e-53  Score=454.63  Aligned_cols=398  Identities=30%  Similarity=0.473  Sum_probs=319.0

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh-----cCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-----VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY   96 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~-----~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~   96 (461)
                      ..++|+++++|||||||.||||++||+++..++......     .+++++|++++++|++|.++....+.++..|+++++
T Consensus       217 ~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~  296 (660)
T PLN02430        217 PKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGY  296 (660)
T ss_pred             cCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEE
Confidence            467899999999999999999999999998877665332     246789999999999999998877677889999877


Q ss_pred             c--chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           97 T--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        97 ~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                      .  ++..+++.+++++||++.++|.+|+.+.+............++.+...+.........     .+..          
T Consensus       297 ~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------  361 (660)
T PLN02430        297 YHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMN-----RGYS----------  361 (660)
T ss_pred             eCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh-----cCCC----------
Confidence            4  5788999999999999999999999998877655443333333222222222211100     0000          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeccCCCchhHHHHHHHhC-CeeeeecccCCCcccee
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIG-VKVQVGYGLTESSPVIA  252 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg~~l~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~  252 (461)
                                      ......+++.+.++++++.++ .+|.+++||+++++++.++.+.++ +.++++||+||+++..+
T Consensus       362 ----------------~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  425 (660)
T PLN02430        362 ----------------HKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTT  425 (660)
T ss_pred             ----------------CCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceE
Confidence                            000122456677888888885 689999999999999988888875 67999999999987766


Q ss_pred             ccCCC-CCCccccccCCCCeEEEEEeC-CCC-CcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          253 ARRPT-CNVLGSVGHPINHTEIKIVDA-ETN-EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       253 ~~~~~-~~~~~~~G~~~~~~~i~i~d~-~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      ...+. ....+++|.|.+++++++.|. +.+ .+++.+..|||+|+||+++.|||++|+.|++.| .+|||+|||+|+++
T Consensus       426 ~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d  504 (660)
T PLN02430        426 LGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEIL  504 (660)
T ss_pred             eeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceeccceEEEC
Confidence            55443 234689999999999999873 333 455666789999999999999999999999999 59999999999999


Q ss_pred             cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC-CCeeEEEEEcChHHHHHHHHHc
Q 012526          330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRL  408 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~-~~~~~a~vv~~~~~~~~~~~~~  408 (461)
                      +          ||+++|.||.||+|++++|++|+|.+||+++.+||.|.+|+|+|.+ ++.++|+||++++.+..++++.
T Consensus       505 ~----------dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~  574 (660)
T PLN02430        505 P----------NGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDN  574 (660)
T ss_pred             C----------CCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhC
Confidence            8          8999999999999998789999999999999999999999999987 5789999999999998888877


Q ss_pred             CCCcCCccccCcHHHHHHHHHHHHHHhc----cCCCccccEEEecCCCCCCCCcccC
Q 012526          409 SIVHADASELSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      ++..........+++++.+.+.+.+++.    +..++|++|++.+++|+++||+||+
T Consensus       575 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~  631 (660)
T PLN02430        575 GFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTA  631 (660)
T ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCCh
Confidence            6653222234567889999998888853    2238999999999999999999984

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-52  Score=449.43  Aligned_cols=395  Identities=27%  Similarity=0.406  Sum_probs=309.5

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhc----C-CCCCcEEEEECChhhhHHHhhhhhhhccCeEEE
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV----P-AENGDKFLSMLPPWHVYERACGYFIFSRGIELM   95 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~----~-~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~   95 (461)
                      ...++|+++++|||||||.||||++||+++++++......+    + +.++|++++++|++|++++......+..|+.+.
T Consensus       260 ~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~  339 (700)
T PTZ00216        260 PENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIG  339 (700)
T ss_pred             CCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEE
Confidence            34678999999999999999999999999998877665443    2 468899999999999999876666678888887


Q ss_pred             EcchhhHHH-------HHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526           96 YTAVRNLKD-------DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  168 (461)
Q Consensus        96 ~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      +.++..+.+       .+++++||++.++|.+|+.+.+...........+++.+.........     ..+..+      
T Consensus       340 ~~~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~~------  408 (700)
T PTZ00216        340 FGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRL-----RALKEG------  408 (700)
T ss_pred             ECCHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-----HHHHcC------
Confidence            766666655       68999999999999999999887654433333322222111111110     000000      


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeccCCCchhHHHHHHH-hCCeeeeecccCC
Q 012526          169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTE  246 (461)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg~~l~~~~~~~~~~-~~~~v~~~YG~tE  246 (461)
                                              .....++.+++++.+..++ .+|.+++||+++++++.++++. ++ .++++||+||
T Consensus       409 ------------------------~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TE  463 (700)
T PTZ00216        409 ------------------------KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTE  463 (700)
T ss_pred             ------------------------CCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCccc
Confidence                                    0011345667777777775 6899999999999998777665 47 9999999999


Q ss_pred             CccceeccCCCCCCccccccCCCCeEEEEEeCCCC-CcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCce
Q 012526          247 SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN-EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  325 (461)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDl  325 (461)
                      ++...+.........+++|+|+++++++|+|.++. ...+++..|||+|+|++++.|||++|+.|++.|+.+|||+|||+
T Consensus       464 t~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDi  543 (700)
T PTZ00216        464 TVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDV  543 (700)
T ss_pred             ccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccce
Confidence            98776665555556789999999999999996542 23456678999999999999999999999999988999999999


Q ss_pred             EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccE---EEEEeCCCCeeEEEEEcChHHHH
Q 012526          326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ---IVVIGQDQRRPGAIIVPDKEEVL  402 (461)
Q Consensus       326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~---a~V~~~~~~~~~a~vv~~~~~~~  402 (461)
                      |++++          ||.++|+||.||+|+..+|++|+|.+||+++.+||.|.+   +++++..++.++|+|+++.+.+.
T Consensus       544 g~~d~----------dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~  613 (700)
T PTZ00216        544 GSIAA----------NGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAM  613 (700)
T ss_pred             EEEcC----------CCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHH
Confidence            99998          899999999999998569999999999999999999996   44455567889999999999888


Q ss_pred             HHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhcc----CCCccccEEEecCCCCCCCCcccC
Q 012526          403 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSK----CSFQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      .+++++++...-......+++++.+.+.+.+....    ..++|++|++++++|+++||+||+
T Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~  676 (700)
T PTZ00216        614 AFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTA  676 (700)
T ss_pred             HHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCCh
Confidence            88887765422122345677888888888877432    238999999999999999999984

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.4e-51  Score=431.82  Aligned_cols=333  Identities=35%  Similarity=0.555  Sum_probs=290.0

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC--CCCCcEEEEECChhhhHHHhhhhhh-hccCeEEEEc-
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT-   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~~~~~~~~~-l~~G~~~~~~-   97 (461)
                      .+++|+++++|||||||.||||++||+++..+...+...++  +++.|++++++|++|.+|+..++.+ +..|+++++. 
T Consensus       168 ~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~  247 (534)
T COG0318         168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLS  247 (534)
T ss_pred             CCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCC
Confidence            67899999999999999999999999999999999888888  8999999999999999999987776 8899888884 


Q ss_pred             ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                          +++.++..+.+++++++.++|.++..++.......                                         
T Consensus       248 ~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~-----------------------------------------  286 (534)
T COG0318         248 PEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD-----------------------------------------  286 (534)
T ss_pred             CCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-----------------------------------------
Confidence                47789999999999999999999999877533221                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeccCCCchhH-HHHHHHhC-CeeeeecccCCCccc
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPV  250 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg~~l~~~~-~~~~~~~~-~~v~~~YG~tE~~~~  250 (461)
                                                        ..+. .+|.+++||+++++++ +++.+.++ ..+++.||+||++..
T Consensus       287 ----------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~  332 (534)
T COG0318         287 ----------------------------------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPV  332 (534)
T ss_pred             ----------------------------------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCce
Confidence                                              1111 2599999999998876 66777887 579999999999987


Q ss_pred             eeccCCCC--CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEee
Q 012526          251 IAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  328 (461)
Q Consensus       251 ~~~~~~~~--~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~  328 (461)
                      ++......  ...+++|.|.++++++|+|+++++++| |++|||+|+||+++.|||++|+.|...|+.+|||+|||+|++
T Consensus       333 ~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~  411 (534)
T COG0318         333 VTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYV  411 (534)
T ss_pred             eecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEE
Confidence            77766555  456778999999999999988776766 999999999999999999999999998865699999999999


Q ss_pred             ccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHH
Q 012526          329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  404 (461)
Q Consensus       329 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~  404 (461)
                      ++          +|+++|.||.+|+|+. +|++|+|.|||+++.+||+|.+++|+|.+++    .+.|+|++++..    
T Consensus       412 d~----------~G~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~----  476 (534)
T COG0318         412 DE----------DGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGG----  476 (534)
T ss_pred             cC----------CccEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCC----
Confidence            98          8999999999999996 9999999999999999999999999999876    455777776420    


Q ss_pred             HHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          405 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                               + ...+.++++++++.+++.|+     .++++.++++.|.+.+||+.
T Consensus       477 ---------~-~~~~~~~i~~~~~~~l~~~~-----~P~~v~~v~~lP~t~sGKi~  517 (534)
T COG0318         477 ---------D-AELTAEELRAFLRKRLALYK-----VPRIVVFVDELPRTASGKID  517 (534)
T ss_pred             ---------C-CCCCHHHHHHHHHhhhhccc-----CCeEEEEeCCCCCCCchhhh
Confidence                     0 23378999999999999997     77899999999999999974

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=4.8e-51  Score=414.85  Aligned_cols=338  Identities=25%  Similarity=0.318  Sum_probs=284.8

Q ss_pred             cCcccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHH-HHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhcc
Q 012526           13 AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSR   90 (461)
Q Consensus        13 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~   90 (461)
                      .++.++...++++|+++++|||||||.||||+|+|+.++.... .....+.+.++|++++..++.|++|... .+.++..
T Consensus       159 ~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~  238 (528)
T COG0365         159 ASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLAS  238 (528)
T ss_pred             cCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhc
Confidence            3556667779999999999999999999999999997665543 4455677889999999999999999987 6777999


Q ss_pred             CeEEEEc------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012526           91 GIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFC  164 (461)
Q Consensus        91 G~~~~~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (461)
                      |++++++      +++.+++.|+++++|.+++.|+.++.|.+....                                  
T Consensus       239 Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~----------------------------------  284 (528)
T COG0365         239 GATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLG----------------------------------  284 (528)
T ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCc----------------------------------
Confidence            9999874      277899999999999999999999998764320                                  


Q ss_pred             cccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecc
Q 012526          165 LTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYG  243 (461)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG  243 (461)
                                                               .+..++++|.+.+.|||++++. +.+.+.+|+.|.+.||
T Consensus       285 -----------------------------------------~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~g  323 (528)
T COG0365         285 -----------------------------------------EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYG  323 (528)
T ss_pred             -----------------------------------------ccccchhheeeeccCCCCCHHHHHHHHHHhCCCEecccc
Confidence                                                     0134556699999999998876 6666777999999999


Q ss_pred             cCCCccceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecC--CccccccCCchhhccccCCCCccc
Q 012526          244 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATKQALDEDGWLN  321 (461)
Q Consensus       244 ~tE~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~--~~~~gy~~~~~~~~~~f~~~~~~~  321 (461)
                      +||++.......+ ....++.|.|.||+++.++|++ ++++++|+ |+|+++.+  +++.+||+||+.+.+.+... ||.
T Consensus       324 qTEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~  399 (528)
T COG0365         324 QTETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYR  399 (528)
T ss_pred             ccccCccccCCCC-CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eee
Confidence            9999965554444 4455666999999999999977 99999999 99999987  99999999999999888544 999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcC
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  397 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~  397 (461)
                      |||.+++|+          ||+++|+||.||+|++ .|++|.+.|||++|.+||+|.||+|+|.+|+    .+.||||++
T Consensus       400 tGD~~~~De----------dGy~~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~  468 (528)
T COG0365         400 TGDWAERDE----------DGYFWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLA  468 (528)
T ss_pred             cCceeEEcc----------CCCEEEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEec
Confidence            999999999          9999999999999997 7999999999999999999999999999764    466899987


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCcc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  459 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~  459 (461)
                      +.                .+.+  +|.+.+++.+.+..-+ ...+++|.++++.|++.|||+
T Consensus       469 ~g----------------~~~~--~L~~ei~~~vr~~~~~-~~~p~~i~fv~~LPkT~sGKI  511 (528)
T COG0365         469 AG----------------VEPN--ELAEEIRRHVARNIGP-HAIPRKIRFVDELPKTASGKI  511 (528)
T ss_pred             CC----------------CChH--HHHHHHHHHHHhccCc-ccCCceEEEecCCCCCCcccH
Confidence            54                1122  6666676666665555 338899999999999999997

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-51  Score=393.91  Aligned_cols=334  Identities=27%  Similarity=0.421  Sum_probs=290.9

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-   97 (461)
                      ..+.|+|++-|.|||||||.|||+.+||.|++++......+++++..+++++..|++|.+|... .+.++..|++++++ 
T Consensus       229 k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~  308 (596)
T KOG1177|consen  229 KWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPA  308 (596)
T ss_pred             hhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeC
Confidence            4468899999999999999999999999999999999999999999999999999999999766 45569999999995 


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++.+.++.|.++++|.++++|+++..+++..+....+.                                       
T Consensus       309 ~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~---------------------------------------  349 (596)
T KOG1177|consen  309 PSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDL---------------------------------------  349 (596)
T ss_pred             CCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCch---------------------------------------
Confidence               58899999999999999999999999987665554333                                       


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCe-eeeecccCCCcccee
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIA  252 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~-v~~~YG~tE~~~~~~  252 (461)
                                                          +++|.++.||+++|+++ +...+..+.. +...||+||++...+
T Consensus       350 ------------------------------------s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~  393 (596)
T KOG1177|consen  350 ------------------------------------SSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLF  393 (596)
T ss_pred             ------------------------------------hhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCccee
Confidence                                                22377899999999987 5555655543 677899999998777


Q ss_pred             ccCCCC---CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          253 ARRPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       253 ~~~~~~---~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      .....+   ....++|+..++.+..++| +.|..++.|..|||++||.+.+.|||++++.|.+...+|.||+|||+|.++
T Consensus       394 ~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~  472 (596)
T KOG1177|consen  394 MSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMD  472 (596)
T ss_pred             eecCCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEc
Confidence            665444   4457899999999999999 778999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeEEEEE----cChHHHHHHH
Q 012526          330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV----PDKEEVLMAA  405 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv----~~~~~~~~~~  405 (461)
                      +          +|.++|+||.+|+|+. +|++|+|.|||+.|.+||.|.++.|+|++|++++..|+    +...      
T Consensus       473 e----------nG~i~iVGRskdmI~r-GGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~------  535 (596)
T KOG1177|consen  473 E----------NGTIEIVGRSKDMIIR-GGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEG------  535 (596)
T ss_pred             C----------CCcEEEEEcccCeEEe-CCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecc------
Confidence            9          9999999999999996 99999999999999999999999999999998774443    3322      


Q ss_pred             HHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCcc
Q 012526          406 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  459 (461)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~  459 (461)
                              .......++|+.+|+.+|..|+     .|+.|.++++-|.+-+||+
T Consensus       536 --------~e~~~t~E~lKa~Ck~klaHFK-----iPky~vf~~~FPlT~tGKI  576 (596)
T KOG1177|consen  536 --------AEGKTTAETLKAMCKGKLAHFK-----IPKYFVFVDEFPLTTTGKI  576 (596)
T ss_pred             --------ccccccHHHHHHHHhccccccc-----CCcEEEEeccCcccccccc
Confidence                    1122688999999999999987     6678999999999999986

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.1e-48  Score=417.25  Aligned_cols=354  Identities=23%  Similarity=0.363  Sum_probs=284.2

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCC--CCcEEEEECChhhhHHHhh-hhhhhccCeEEEEcc
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTA   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~--~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~   98 (461)
                      ..++|+++|+|||||||.||||++||+++..++......++..  +++++++++|++|++++.. .+.++..|+++++.+
T Consensus       206 ~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~  285 (614)
T PRK08180        206 VGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDD  285 (614)
T ss_pred             CCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeC
Confidence            4678999999999999999999999999998887776666653  5689999999999999765 456788999998742


Q ss_pred             -------hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526           99 -------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus        99 -------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                             +..+++.++++++|+++++|.+|..+++.......    .                                 
T Consensus       286 ~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~----~---------------------------------  328 (614)
T PRK08180        286 GKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA----L---------------------------------  328 (614)
T ss_pred             CCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh----h---------------------------------
Confidence                   23678889999999999999999998775422100    0                                 


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHH-----hC--Ceeeeeccc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-----IG--VKVQVGYGL  244 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~-----~~--~~v~~~YG~  244 (461)
                                                        ....+.++|.+++||+++++++.+.+..     ++  +.+++.||+
T Consensus       329 ----------------------------------~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~  374 (614)
T PRK08180        329 ----------------------------------RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGM  374 (614)
T ss_pred             ----------------------------------hhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecc
Confidence                                              0012345699999999999887444432     33  679999999


Q ss_pred             CCCccceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCc
Q 012526          245 TESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  324 (461)
Q Consensus       245 tE~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGD  324 (461)
                      ||++.+++.........+++|+|.++++++++|+        |..|||+++|++++.||+++|+.+.+.|+.+|||+|||
T Consensus       375 TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGD  446 (614)
T PRK08180        375 TETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD  446 (614)
T ss_pred             cccCCceEecccccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccc
Confidence            9998776655444456789999999999999873        34699999999999999999999999998899999999


Q ss_pred             eEeeccCCCCCcccccCCeEEEeccccceEEcCCceeec--chhHHHHHhcCccccEEEEEeCCCCeeEEEEEcChHHHH
Q 012526          325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE--PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVL  402 (461)
Q Consensus       325 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~--~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~~~~~  402 (461)
                      +|++++.      .+++|.++|.||.||+|++++|++|+  +.|+|.++.+||.|.+|+|+|.+++.++|+|+++++...
T Consensus       447 lg~~~~~------~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~~~a~V~~~~~~~~  520 (614)
T PRK08180        447 AVRFVDP------ADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDEIGLLVFPNLDACR  520 (614)
T ss_pred             eEEecCC------cCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCceEEEEEcCHHHHH
Confidence            9999310      01179999999999999877898776  778899999999999999999999999999999887654


Q ss_pred             HHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCC---CccccEEEecCCCCCCCCcccC
Q 012526          403 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS---FQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      ..+... .........+.++++++++++|.+|+....   ++|++|.++++.|++++||+|.
T Consensus       521 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~  581 (614)
T PRK08180        521 RLAGLL-ADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITD  581 (614)
T ss_pred             HHHhhc-ccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCc
Confidence            444333 111111234678899999999999996533   4899999999999999999973

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.1e-48  Score=408.97  Aligned_cols=331  Identities=24%  Similarity=0.376  Sum_probs=273.9

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~--   97 (461)
                      ...++|+++++|||||||.||+|++||+++..+.......++++++|++++++|++|.+++.. .+.++..|+++++.  
T Consensus       179 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~  258 (539)
T PRK06334        179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYN  258 (539)
T ss_pred             CCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecC
Confidence            457799999999999999999999999999988877777888999999999999999999865 56678899998873  


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.|+++++|++.++|+++..+++......                                           
T Consensus       259 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------------------  295 (539)
T PRK06334        259 PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE-------------------------------------------  295 (539)
T ss_pred             CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc-------------------------------------------
Confidence              57889999999999999999999998876432210                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccceec
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~~  253 (461)
                                                      ..+.++|.+++||+++++.+ +.+.+.+ ++.+++.||+||++.+++.
T Consensus       296 --------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  343 (539)
T PRK06334        296 --------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI  343 (539)
T ss_pred             --------------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence                                            12344599999999999887 5555666 6899999999999877665


Q ss_pred             cCCCC-CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhcccc-CCCCcccCCceEeeccC
Q 012526          254 RRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL-DEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       254 ~~~~~-~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f-~~~~~~~TGDlg~~~~~  331 (461)
                      ..... ...+++|+|+++++++++|++++.++++|+.|||+|+|++++.||+++++.+.... ..++||+|||+|++++ 
T Consensus       344 ~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~-  422 (539)
T PRK06334        344 NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR-  422 (539)
T ss_pred             ccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC-
Confidence            44332 23467999999999999998888999999999999999999999999988654322 3478999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccE------EEEEeCCCCeeEEEEEcChHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ------IVVIGQDQRRPGAIIVPDKEEVLMAA  405 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~------a~V~~~~~~~~~a~vv~~~~~~~~~~  405 (461)
                               +|.+++.||.||+|++ +|++|+|.|||++|.+||+|.+      ++|++.+++...++++...       
T Consensus       423 ---------~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-------  485 (539)
T PRK06334        423 ---------HGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTF-------  485 (539)
T ss_pred             ---------CCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEec-------
Confidence                     8999999999999997 8999999999999999999987      8888887765433332211       


Q ss_pred             HHcCCCcCCccccCcHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          406 KRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                 ..+.++++++++++ ++.|+     +|+.|.++++.|.+.|||+.
T Consensus       486 -----------~~~~~~~~~~l~~~~~~~~~-----~P~~i~~v~~lP~t~~GKi~  525 (539)
T PRK06334        486 -----------PTSISEVNDILKNSKTSSIL-----KISYHHQVESIPMLGTGKPD  525 (539)
T ss_pred             -----------cCChHHHHHHHHhcCCcccc-----cchheeeecccccccCCccc
Confidence                       12356788888875 56665     66789999999999999985

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-47  Score=407.11  Aligned_cols=352  Identities=25%  Similarity=0.335  Sum_probs=278.8

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCC---CcEEEEECChhhhHHHhhh-hhhhccCeEEEEc
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN---GDKFLSMLPPWHVYERACG-YFIFSRGIELMYT   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~---~d~~~~~~p~~~~~~~~~~-~~~l~~G~~~~~~   97 (461)
                      ..++|+++++|||||||.||||++||+++..+.......+...+   .+++++++|++|.+++... +.++..|+++++.
T Consensus       217 ~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~  296 (624)
T PRK12582        217 ITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYID  296 (624)
T ss_pred             CCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEc
Confidence            46789999999999999999999999999887766555444443   5899999999999998664 4568889998874


Q ss_pred             c-------hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           98 A-------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        98 ~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                      +       ...+++.++++++|++.++|.++..+.+.......    .                                
T Consensus       297 ~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~----~--------------------------------  340 (624)
T PRK12582        297 DGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDA----L--------------------------------  340 (624)
T ss_pred             CCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHH----H--------------------------------
Confidence            3       23456778899999999999999888664322100    0                                


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHH-----h--CCeeeeecc
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-----I--GVKVQVGYG  243 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~-----~--~~~v~~~YG  243 (461)
                                                         ....++++|.+++||+++++++.+.+..     +  ++.+++.||
T Consensus       341 -----------------------------------~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG  385 (624)
T PRK12582        341 -----------------------------------RRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYG  385 (624)
T ss_pred             -----------------------------------HHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccc
Confidence                                               0012334599999999999987554443     2  368999999


Q ss_pred             cCCCccceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCC
Q 012526          244 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG  323 (461)
Q Consensus       244 ~tE~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TG  323 (461)
                      +||++.++..........+++|+|.+|+++++++        .|+.|||+|+|++++.||+++|+.+.+.|+++|||+||
T Consensus       386 ~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~--------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TG  457 (624)
T PRK12582        386 ATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLG  457 (624)
T ss_pred             cccccceeecccCCCCCCCCCCcCCCCcEEEEcc--------CCCceEEEEECCcccccccCCccchhhhcCccCCcccc
Confidence            9999876654333345578999999999999863        46789999999999999999999999999889999999


Q ss_pred             ceEee-ccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHH--HHHhcCccccEEEEEeCCCCeeEEEEEcChHH
Q 012526          324 DIGWI-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE--EAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE  400 (461)
Q Consensus       324 Dlg~~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE--~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~~~  400 (461)
                      |+|++ ++       .+++|.++|.||.||+|++++|++|+|.+||  .++.+||.|.+|+|+|.+++.++++|+++.+.
T Consensus       458 Dlg~~~d~-------~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~lv~p~~~~  530 (624)
T PRK12582        458 DAARFVDP-------DDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPAA  530 (624)
T ss_pred             ceEEecCC-------cCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEEEecCHHH
Confidence            99998 42       1126899999999999998789999998885  68889999999999999999999999998765


Q ss_pred             HHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCC--C-ccccEEEecCCCCCCCCcccC
Q 012526          401 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS--F-QIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      ....+...+.  ......+.+++.++++.+|.+++...+  . +|+++.+++++|+.++||+|.
T Consensus       531 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  592 (624)
T PRK12582        531 CRQLAGDPDA--APEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITD  592 (624)
T ss_pred             HHHHHhcCCC--CHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCc
Confidence            4333332111  011224668899999999999996544  5 999999999999999999983

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7e-48  Score=412.67  Aligned_cols=342  Identities=18%  Similarity=0.232  Sum_probs=272.7

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHH-HHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKN-LLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT   97 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~-l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~   97 (461)
                      +...+++|+++|+|||||||.||||+++|++ +......+...+...++|++++..|+.|+.+....+.++..|+++++.
T Consensus       248 ~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~  327 (647)
T PTZ00237        248 YVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMF  327 (647)
T ss_pred             ceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEe
Confidence            3456789999999999999999999999998 444333344556677889999999999987666667789999999885


Q ss_pred             c---------hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526           98 A---------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  168 (461)
Q Consensus        98 ~---------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      +         +..+++.|+++++|++.++|++++.|.+.......    .                              
T Consensus       328 ~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----~------------------------------  373 (647)
T PTZ00237        328 EGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATI----I------------------------------  373 (647)
T ss_pred             CCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccc----c------------------------------
Confidence            3         46799999999999999999999888763211000    0                              


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHH-HHHhCCeeeeecccCCC
Q 012526          169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTES  247 (461)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~-~~~~~~~v~~~YG~tE~  247 (461)
                                                          .....+.++|.+++||+++++++.++ .+.+++.+++.||+||+
T Consensus       374 ------------------------------------~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~  417 (647)
T PTZ00237        374 ------------------------------------RSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEI  417 (647)
T ss_pred             ------------------------------------ccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHh
Confidence                                                00012345699999999999987554 45579999999999999


Q ss_pred             ccceeccCCCC-CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecC---CccccccCCchhhccccCC-CCcccC
Q 012526          248 SPVIAARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALDE-DGWLNT  322 (461)
Q Consensus       248 ~~~~~~~~~~~-~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~f~~-~~~~~T  322 (461)
                      +.......... ...+++|+|.++++++|+|+ ++++++.|+.|||++++|   +++.|||++++.+.+.|.. +|||+|
T Consensus       418 ~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~-~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~T  496 (647)
T PTZ00237        418 GITYLYCYGHINIPYNATGVPSIFIKPSILSE-DGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNS  496 (647)
T ss_pred             ChhhhccCCCCCCCCCCCccCcCCceEEEECC-CCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEEC
Confidence            86554333222 23478999999999999994 788899999999999986   7899999999999887754 799999


Q ss_pred             CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcCh
Q 012526          323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDK  398 (461)
Q Consensus       323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~  398 (461)
                      ||+|++++          +|+++|+||.||+|++ +|++|+|.|||++|.+||.|.+|+|+|.++    +.+.++|++++
T Consensus       497 GDlg~~d~----------dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~  565 (647)
T PTZ00237        497 GDLGFKDE----------NGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQ  565 (647)
T ss_pred             CcEEEECC----------CCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEecc
Confidence            99999998          8999999999999997 799999999999999999999999999975    45678888764


Q ss_pred             HHHHHHHHHcCCCcCCccccCc----HHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          399 EEVLMAAKRLSIVHADASELSK----EKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +.             +....+.    ++|+++++++|..++     .|++|.++++.|.+.|||+.
T Consensus       566 ~~-------------~~~~~~~~~l~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~T~sGKi~  613 (647)
T PTZ00237        566 DQ-------------SNQSIDLNKLKNEINNIITQDIESLA-----VLRKIIIVNQLPKTKTGKIP  613 (647)
T ss_pred             Cc-------------cccCCCHHHHHHHHHHHHHhhcCccc-----cCcEEEEcCCCCCCCCccEe
Confidence            20             0112233    345566666666665     77899999999999999973

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=4.9e-47  Score=405.68  Aligned_cols=330  Identities=28%  Similarity=0.433  Sum_probs=277.7

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEcch-
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTAV-   99 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~-   99 (461)
                      ..++++++++|||||||.||+|.+||++++.+.......+++.++|++++.+|++|.++... .+.++..|+++++.++ 
T Consensus       210 ~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~  289 (632)
T PRK07529        210 IGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQ  289 (632)
T ss_pred             CCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCcc
Confidence            46789999999999999999999999999988877777888899999999999999998875 5667999999988642 


Q ss_pred             --------hhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526          100 --------RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus       100 --------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                              ..+++.++++++|++.++|+++..+.+....                                         
T Consensus       290 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------------------------------------  328 (632)
T PRK07529        290 GYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-----------------------------------------  328 (632)
T ss_pred             ccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-----------------------------------------
Confidence                    4788999999999999999999888652100                                         


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV  250 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~  250 (461)
                                                         ...+.++|.+++||+++++++ +.+.+.+++++++.||+||++..
T Consensus       329 -----------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~  373 (632)
T PRK07529        329 -----------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCV  373 (632)
T ss_pred             -----------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcc
Confidence                                               012344599999999999987 45556679999999999999877


Q ss_pred             eeccCCC-CCCccccccCCCCeEEEEEeC-CCC---CcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCce
Q 012526          251 IAARRPT-CNVLGSVGHPINHTEIKIVDA-ETN---EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  325 (461)
Q Consensus       251 ~~~~~~~-~~~~~~~G~~~~~~~i~i~d~-~~~---~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDl  325 (461)
                      +..+... ....+++|.|.++++++++.. +++   +++++|+.|||+|+||+++.||++++ .+...|..++||+|||+
T Consensus       374 ~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDl  452 (632)
T PRK07529        374 SSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDL  452 (632)
T ss_pred             cccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcCcE
Confidence            7655443 236789999999999998632 334   78899999999999999999999865 45566657899999999


Q ss_pred             EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHH
Q 012526          326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  401 (461)
Q Consensus       326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~  401 (461)
                      |++++          +|.+++.||.||+|+. +|++|+|.+||++|.+||+|.+|+|++.+++    .++++|++.+.  
T Consensus       453 g~~d~----------dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~--  519 (632)
T PRK07529        453 GRIDA----------DGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPG--  519 (632)
T ss_pred             EEEcC----------CceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCC--
Confidence            99998          8999999999999996 8999999999999999999999999998764    46678877543  


Q ss_pred             HHHHHHcCCCcCCccccCcHHHHHHHHHHHHH-HhccCCCccccEEEecCCCCCCCCccc
Q 012526          402 LMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                    ...+.++++++++++|+. ++     .+++|.++++.|.+.+||+.
T Consensus       520 --------------~~~~~~~l~~~~~~~l~~~~~-----~P~~i~~v~~lP~t~~GKi~  560 (632)
T PRK07529        520 --------------ASATEAELLAFARDHIAERAA-----VPKHVRILDALPKTAVGKIF  560 (632)
T ss_pred             --------------CCCCHHHHHHHHHHhcchhcc-----CCcEEEEecCCCCCCCCccc
Confidence                          345678999999999874 44     67899999999999999974

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.6e-47  Score=411.17  Aligned_cols=338  Identities=17%  Similarity=0.196  Sum_probs=275.3

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHH-HHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~   97 (461)
                      ..++++|+++|+|||||||.||||+++|++++. ....+...++++++|++++.+|+.|+.+... .+.++..|+++++.
T Consensus       270 ~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~  349 (666)
T PLN02654        270 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVF  349 (666)
T ss_pred             eecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEE
Confidence            345789999999999999999999999999864 3455666788999999999999999998755 56679999999874


Q ss_pred             -------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           98 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        98 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                             ++..+++.|+++++|++.++|+++..|.+......                                      
T Consensus       350 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------  391 (666)
T PLN02654        350 EGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV--------------------------------------  391 (666)
T ss_pred             CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcccc--------------------------------------
Confidence                   46789999999999999999999988875321100                                      


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC---CeeeeecccCC
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTE  246 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~---~~v~~~YG~tE  246 (461)
                                                         ....+.++|.++++|++++++. +.+.+.+|   +.+.+.||+||
T Consensus       392 -----------------------------------~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE  436 (666)
T PLN02654        392 -----------------------------------TRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE  436 (666)
T ss_pred             -----------------------------------ccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccc
Confidence                                               0012334599999999999886 55556676   68999999999


Q ss_pred             CccceeccCCC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec--CCccccccCCchhhccccCC--CCcc
Q 012526          247 SSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DGWL  320 (461)
Q Consensus       247 ~~~~~~~~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~f~~--~~~~  320 (461)
                      +++......+.  ...++++|.|.+|++++|+| +++++++.++.|||++++  |+++.|||++++.+...+..  +|||
T Consensus       437 ~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~  515 (666)
T PLN02654        437 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYY  515 (666)
T ss_pred             cCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEE
Confidence            98766544332  24568899999999999999 457788888899999999  78999999999988766532  7999


Q ss_pred             cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEc
Q 012526          321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  396 (461)
Q Consensus       321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~  396 (461)
                      +|||+|++++          ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+++|++.+++    .+.++|++
T Consensus       516 ~TGD~~~~d~----------dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl  584 (666)
T PLN02654        516 FSGDGCSRDK----------DGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTL  584 (666)
T ss_pred             EeCceEEECC----------CCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEE
Confidence            9999999998          8999999999999997 8999999999999999999999999998764    56788887


Q ss_pred             ChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          397 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++..             .......++|+++++++|..++     .+++|.++++.|.+.|||+.
T Consensus       585 ~~~~-------------~~~~~l~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~T~sGKi~  630 (666)
T PLN02654        585 VEGV-------------PYSEELRKSLILTVRNQIGAFA-----APDKIHWAPGLPKTRSGKIM  630 (666)
T ss_pred             CCCC-------------CCCHHHHHHHHHHHHHhCCCCc-----CCCEEEECCCCCCCCCcCch
Confidence            6430             0011112467777777777776     67789999999999999973

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=6.4e-47  Score=394.17  Aligned_cols=336  Identities=17%  Similarity=0.123  Sum_probs=264.2

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc----c
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----A   98 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~----~   98 (461)
                      +++|+++|+|||||||.||||++||++++.++......++++++|++++.+|++|.+++...+.++..|+++++.    +
T Consensus       117 ~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~  196 (499)
T PLN03051        117 PVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPL  196 (499)
T ss_pred             CccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCC
Confidence            568999999999999999999999999887666555667889999999999999999987667779999999874    3


Q ss_pred             hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHH
Q 012526           99 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  178 (461)
Q Consensus        99 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (461)
                      +..+++.|+++++|++.++|+++..|.+......                                              
T Consensus       197 ~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~----------------------------------------------  230 (499)
T PLN03051        197 GRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAM----------------------------------------------  230 (499)
T ss_pred             cHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccc----------------------------------------------
Confidence            5789999999999999999999988865211000                                              


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHH-h--CCeeeeecccCCCccceecc-
Q 012526          179 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-I--GVKVQVGYGLTESSPVIAAR-  254 (461)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~-~--~~~v~~~YG~tE~~~~~~~~-  254 (461)
                                                 ....+.++|.+++||++++++..++.+. +  +..+++.||+||++...... 
T Consensus       231 ---------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  283 (499)
T PLN03051        231 ---------------------------EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISST  283 (499)
T ss_pred             ---------------------------ccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccc
Confidence                                       0012233589999999998877555544 3  47899999999986543322 


Q ss_pred             CCCCCCccccccCCCCeEEEEEeCCCCCcCCCC--CceEEEEecCCc--cccccCCchhhccccCC--------CCcccC
Q 012526          255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQV--MQGYFKNPSATKQALDE--------DGWLNT  322 (461)
Q Consensus       255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g--~~Gel~v~~~~~--~~gy~~~~~~~~~~f~~--------~~~~~T  322 (461)
                      .......+++|+|.++++++|+| +++++++.|  +.|||+++||.+  +.||++++. +...++.        ..||+|
T Consensus       284 ~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~T  361 (499)
T PLN03051        284 LLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRH  361 (499)
T ss_pred             ccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cceeeecCCccccCCcceeec
Confidence            22223457899999999999999 567888888  489999999976  589997653 3322211        126899


Q ss_pred             CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhc-CccccEEEEEeCCCC-----eeEEEE--
Q 012526          323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQR-----RPGAII--  394 (461)
Q Consensus       323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~-~p~V~~a~V~~~~~~-----~~~a~v--  394 (461)
                      ||+|++++          ||+++|+||.||+|+. +|++|+|.|||++|.+ ||+|.+|+|++.+++     .+.|+|  
T Consensus       362 GDlg~~d~----------dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~  430 (499)
T PLN03051        362 GDIMKRTP----------GGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVL  430 (499)
T ss_pred             CCeEEECC----------CCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEc
Confidence            99999998          8999999999999997 8999999999999996 999999999998763     455666  


Q ss_pred             -EcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          395 -VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       395 -v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                       |++++               ....+.++++++|++++.+...+. .++++|.++++.|.+.|||+.
T Consensus       431 ~v~~~~---------------~~~~~~~~l~~~~~~~l~~~l~~~-~~~~~i~~v~~lP~t~~GKi~  481 (499)
T PLN03051        431 GEEKKG---------------FDQARPEALQKKFQEAIQTNLNPL-FKVSRVKIVPELPRNASNKLL  481 (499)
T ss_pred             ceeccc---------------ccccchHHHHHHHHHHHHhhcCCc-cCCceEEEcCCCCCCCCccHH
Confidence             55432               013466889999988887654332 266789999999999999974

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-47  Score=400.34  Aligned_cols=329  Identities=24%  Similarity=0.324  Sum_probs=279.2

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---c
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---~   98 (461)
                      ..++++++++|||||||.||+|.++|+++...+......+++.++|++++..|++|.+++...+.++..|+++++.   +
T Consensus       204 ~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~  283 (549)
T PRK07788        204 KPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFD  283 (549)
T ss_pred             CCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCCCC
Confidence            3457889999999999999999999999998888888888899999999999999999998777789999999884   6


Q ss_pred             hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHH
Q 012526           99 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  178 (461)
Q Consensus        99 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (461)
                      +..+++.++++++|++.++|+++..+++......                                              
T Consensus       284 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------------------------  317 (549)
T PRK07788        284 PEATLEDIAKHKATALVVVPVMLSRILDLGPEVL----------------------------------------------  317 (549)
T ss_pred             HHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc----------------------------------------------
Confidence            8899999999999999999999988876422100                                              


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceeccCCC
Q 012526          179 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT  257 (461)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  257 (461)
                                                 ....+.++|.+++||+++++.+ +.+.+.++..+++.||+||++..+......
T Consensus       318 ---------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~  370 (549)
T PRK07788        318 ---------------------------AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPED  370 (549)
T ss_pred             ---------------------------CCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhh
Confidence                                       0012344599999999999887 555667898999999999988655433322


Q ss_pred             -CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCc
Q 012526          258 -CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  336 (461)
Q Consensus       258 -~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~  336 (461)
                       ...++++|+|.++++++++| +++++++.|+.|||+++|++++.||++++..  . + .+|||+|||+|++++      
T Consensus       371 ~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~------  439 (549)
T PRK07788        371 LAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDE------  439 (549)
T ss_pred             hhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcC------
Confidence             23457899999999999999 5578889999999999999999999998765  2 2 379999999999998      


Q ss_pred             ccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCc
Q 012526          337 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  412 (461)
Q Consensus       337 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  412 (461)
                          +|.+++.||.||+|+. +|++|+|.+||++|.+||+|.+++|++.+++    .+.++|++.++             
T Consensus       440 ----~g~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~-------------  501 (549)
T PRK07788        440 ----DGLLFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPG-------------  501 (549)
T ss_pred             ----CCCEEEeccCcceEEE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCC-------------
Confidence                8999999999999996 8999999999999999999999999998765    46788887543             


Q ss_pred             CCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          413 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       413 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                         ...+.++++++++++|+.|+     .+++|.++++.|.+.|||+.
T Consensus       502 ---~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~  541 (549)
T PRK07788        502 ---AALDEDAIKDYVRDNLARYK-----VPRDVVFLDELPRNPTGKVL  541 (549)
T ss_pred             ---CCCCHHHHHHHHHHhhhcCC-----CCcEEEEeCCCCCCCCcCEe
Confidence               34677899999999999987     66789999999999999974

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=7.4e-47  Score=399.21  Aligned_cols=334  Identities=27%  Similarity=0.414  Sum_probs=278.1

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh----hcC-CCCCcEEEEECChhhhHHHhhhh-hhhccCeEE
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVP-AENGDKFLSMLPPWHVYERACGY-FIFSRGIEL   94 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~----~~~-~~~~d~~~~~~p~~~~~~~~~~~-~~l~~G~~~   94 (461)
                      ...++++++++|||||||.||+|++||+++..++..+..    .+. ....++++..+|++|.+++...+ .++..|+++
T Consensus       194 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~  273 (560)
T PLN02574        194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTI  273 (560)
T ss_pred             CCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEE
Confidence            346789999999999999999999999999887765543    122 23568889999999999987654 456788888


Q ss_pred             EEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526           95 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus        95 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                      ++.   ++..+++.++++++|++.++|+++..+.+......                                       
T Consensus       274 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------  314 (560)
T PLN02574        274 VVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVC---------------------------------------  314 (560)
T ss_pred             EEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccc---------------------------------------
Confidence            774   67889999999999999999999988876421100                                       


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCcc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSP  249 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~  249 (461)
                                                         ...+..+|.+++||+++++.. +++.+.+ ++.+++.||+||++.
T Consensus       315 -----------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~  359 (560)
T PLN02574        315 -----------------------------------GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA  359 (560)
T ss_pred             -----------------------------------cCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCc
Confidence                                               012334588999999998876 5666677 789999999999986


Q ss_pred             ceeccC--CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEe
Q 012526          250 VIAARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  327 (461)
Q Consensus       250 ~~~~~~--~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~  327 (461)
                      +.+...  ......+++|.+.++++++|+|++++.+++.|+.|||+|+|++++.||+++++.+.+.|+.+|||+|||+|+
T Consensus       360 ~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~  439 (560)
T PLN02574        360 VGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAY  439 (560)
T ss_pred             eeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEE
Confidence            654322  222456789999999999999988899999999999999999999999999999999998899999999999


Q ss_pred             eccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHH
Q 012526          328 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  403 (461)
Q Consensus       328 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~  403 (461)
                      +++          +|.+++.||.||+|++ +|++|++.+||++|.+||+|.+++|++.+++    .+.++|+.+++    
T Consensus       440 ~~~----------~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~----  504 (560)
T PLN02574        440 FDE----------DGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQG----  504 (560)
T ss_pred             EEC----------CCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCC----
Confidence            998          8999999999999998 8999999999999999999999999998764    35577776532    


Q ss_pred             HHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          404 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                  ...+.+++.++++++|+.|+     .++.|.++++.|.+.+||+.
T Consensus       505 ------------~~~~~~~l~~~~~~~l~~~~-----~p~~v~~v~~iP~t~~GKi~  544 (560)
T PLN02574        505 ------------STLSQEAVINYVAKQVAPYK-----KVRKVVFVQSIPKSPAGKIL  544 (560)
T ss_pred             ------------CCCCHHHHHHHHHHhccCcc-----cCcEEEEeeccCCCCcchhh
Confidence                        34566889999999999887     56789999999999999974

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.7e-46  Score=401.38  Aligned_cols=344  Identities=18%  Similarity=0.175  Sum_probs=273.9

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHH-HHHHhhhcCCCCCcEEEEECChhhhHHHh-hhhhhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ-IRSLYDIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~-~~~~~~~~~~~~~d~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~~   97 (461)
                      ....++++++|+|||||||.||||+++|++++.+ .......++++++|++++..|+.|+.+.. ..+.++..|+++++.
T Consensus       227 ~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~  306 (628)
T TIGR02316       227 EWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLY  306 (628)
T ss_pred             eecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEe
Confidence            3357799999999999999999999999997543 44556678899999999999999998865 456679999999874


Q ss_pred             -------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           98 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        98 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                             ++..+++.++++++|++.++|++++.|.+.....                                       
T Consensus       307 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------------------  347 (628)
T TIGR02316       307 EGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW---------------------------------------  347 (628)
T ss_pred             CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------------------------------------
Confidence                   3678999999999999999999998775421000                                       


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-HHhCCeeeeecccCCCcc
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSP  249 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-~~~~~~v~~~YG~tE~~~  249 (461)
                                                        .....+.++|.+++||+++++.+.++. +.++..+++.||+||++.
T Consensus       348 ----------------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~  393 (628)
T TIGR02316       348 ----------------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGW  393 (628)
T ss_pred             ----------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCc
Confidence                                              000234456999999999998875554 557999999999999985


Q ss_pred             ceeccCCC----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecC---CccccccCCchhhcccc---CCCCc
Q 012526          250 VIAARRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQAL---DEDGW  319 (461)
Q Consensus       250 ~~~~~~~~----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~f---~~~~~  319 (461)
                      .++.....    ....+++|.|+++++++|+|++++++++.|+.|||++++|   +.+.||+++++.+...+   ..++|
T Consensus       394 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~  473 (628)
T TIGR02316       394 PVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPL  473 (628)
T ss_pred             eeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCE
Confidence            44332221    2345789999999999999977899999999999999998   57899999988776654   24689


Q ss_pred             ccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEE
Q 012526          320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIV  395 (461)
Q Consensus       320 ~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv  395 (461)
                      |+|||+|++++          ||+++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.++|+
T Consensus       474 ~~TGD~g~~d~----------dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv  542 (628)
T TIGR02316       474 YSSFDWGIRDE----------DGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAI  542 (628)
T ss_pred             EECCceEEEcC----------CCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEE
Confidence            99999999998          8999999999999997 8999999999999999999999999998654    4567777


Q ss_pred             cChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          396 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +++...        ...........++|+++++++|+.|+     .|++|.++++.|.+.|||+.
T Consensus       543 ~~~~~~--------~~~~~~~~~~~~~i~~~~~~~L~~~~-----~P~~v~~v~~lP~t~sGKi~  594 (628)
T TIGR02316       543 LKESDS--------AGDAHDPHAVETGMMDCVVRQLGAVA-----RPARVYFVAALPKTRSGKLL  594 (628)
T ss_pred             EcCCcc--------cccccchHHHHHHHHHHHHHhcCCCc-----CCCEEEEcCCCCCCCchHHH
Confidence            653210        00000011234678888888888876     67899999999999999973

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.7e-46  Score=401.43  Aligned_cols=339  Identities=17%  Similarity=0.205  Sum_probs=274.7

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHH-HHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~   96 (461)
                      ....+++|+++|+|||||||.||||+++|++++.+. ......+++.++|++++..|++|+.+... .+.++..|+++++
T Consensus       230 ~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl  309 (625)
T TIGR02188       230 PEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVM  309 (625)
T ss_pred             ceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEE
Confidence            345677899999999999999999999999986544 34455678899999999999999988654 5667899999887


Q ss_pred             c-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCC
Q 012526           97 T-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  169 (461)
Q Consensus        97 ~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      .       ++..+++.++++++|++.++|+++..|.+......                                     
T Consensus       310 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------------  352 (625)
T TIGR02188       310 FEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV-------------------------------------  352 (625)
T ss_pred             ECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc-------------------------------------
Confidence            4       47889999999999999999999988866321100                                     


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HHHHhC---CeeeeecccC
Q 012526          170 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIG---VKVQVGYGLT  245 (461)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~~~~~---~~v~~~YG~t  245 (461)
                                                          ....+.++|.+++||+++++++.+ +.+.++   +++++.||+|
T Consensus       353 ------------------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~T  396 (625)
T TIGR02188       353 ------------------------------------KKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQT  396 (625)
T ss_pred             ------------------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEeccccc
Confidence                                                001234569999999999988744 445554   7899999999


Q ss_pred             CCccceeccCCC--CCCccccccCCCCeEEEEEeCCCCCcCC-CCCceEEEEec--CCccccccCCchhhccccC--CCC
Q 012526          246 ESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDG  318 (461)
Q Consensus       246 E~~~~~~~~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~-~g~~Gel~v~~--~~~~~gy~~~~~~~~~~f~--~~~  318 (461)
                      |++..+....+.  ...++++|+|.++++++++| +++++++ +|+.|||+|++  |+++.|||++++.+...+.  .+|
T Consensus       397 E~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g  475 (625)
T TIGR02188       397 ETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPG  475 (625)
T ss_pred             ccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCC
Confidence            998775544332  34568899999999999999 6688888 99999999999  6899999999988777653  378


Q ss_pred             cccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEE
Q 012526          319 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAII  394 (461)
Q Consensus       319 ~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~v  394 (461)
                      ||+|||+|++++          +|.++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    .+.++|
T Consensus       476 ~~~TGDl~~~d~----------dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~v  544 (625)
T TIGR02188       476 YYFTGDGARRDK----------DGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFV  544 (625)
T ss_pred             EEECCceEEEcC----------CCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEE
Confidence            999999999998          8999999999999997 8999999999999999999999999998654    567888


Q ss_pred             EcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          395 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       395 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++.++.             .......++++++++++|+.++     .|+.|.++++.|.+.|||+.
T Consensus       545 v~~~~~-------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sGKi~  592 (625)
T TIGR02188       545 TLKDGY-------------EPDDELRKELRKHVRKEIGPIA-----KPDKIRFVPGLPKTRSGKIM  592 (625)
T ss_pred             EeCCCC-------------CCCHHHHHHHHHHHHhhcCCCc-----cCcEEEECCCCCCCCCccch
Confidence            876430             0011123567777777777776     77899999999999999973

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4.9e-46  Score=393.24  Aligned_cols=342  Identities=26%  Similarity=0.323  Sum_probs=273.0

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---c
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---~   98 (461)
                      ..++++++++|||||||.||+|+++|+++..+.......+++.++|++++.+|++|.+++...+.++..|+++++.   +
T Consensus       169 ~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~  248 (563)
T PLN02860        169 WAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFD  248 (563)
T ss_pred             CCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecCCCC
Confidence            4678999999999999999999999999988777766778899999999999999999988777889999998874   6


Q ss_pred             hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHH
Q 012526           99 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  178 (461)
Q Consensus        99 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (461)
                      +..+++.++++++|++.++|+++..+.+......                                              
T Consensus       249 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------------------------  282 (563)
T PLN02860        249 AKAALQAIKQHNVTSMITVPAMMADLISLTRKSM----------------------------------------------  282 (563)
T ss_pred             HHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh----------------------------------------------
Confidence            7889999999999999999999988876432110                                              


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccceeccCC
Q 012526          179 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                 ....+..+|.+++||+++++.+ +.+.+.+ +.++++.||+||++..++....
T Consensus       283 ---------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  335 (563)
T PLN02860        283 ---------------------------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTL  335 (563)
T ss_pred             ---------------------------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccc
Confidence                                       0022344589999999999887 5555666 7899999999998765433211


Q ss_pred             CC-----------------------CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccc
Q 012526          257 TC-----------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA  313 (461)
Q Consensus       257 ~~-----------------------~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~  313 (461)
                      ..                       ....++|+|.+++++++++++      +|+.|||+++|++++.||+++|+.+...
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~  409 (563)
T PLN02860        336 HDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASV  409 (563)
T ss_pred             cccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchh
Confidence            10                       112368999999999999854      5789999999999999999999999999


Q ss_pred             cCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----e
Q 012526          314 LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----R  389 (461)
Q Consensus       314 f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~  389 (461)
                      |..+|||+|||+|++++          +|.+++.||.||+|+. +|++|+|.+||+++.+||+|.+++|++.+++    .
T Consensus       410 ~~~~g~~~TGDl~~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~  478 (563)
T PLN02860        410 LSNDGWLDTGDIGWIDK----------AGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEM  478 (563)
T ss_pred             ccCCCeEEccceEEEcC----------CCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCce
Confidence            98899999999999998          8999999999999997 8999999999999999999999999998654    5


Q ss_pred             eEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEe-cCCCCCCCCccc
Q 012526          390 PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVV-DEPFTVNFLCLA  460 (461)
Q Consensus       390 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~  460 (461)
                      +.++|+++++...  ..............+.+++++++++ +|+.|+     .|+.|.++ ++.|.+.+||+.
T Consensus       479 ~~a~v~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~-----~P~~~~~~~~~lP~t~~GKi~  544 (563)
T PLN02860        479 VVACVRLRDGWIW--SDNEKENAKKNLTLSSETLRHHCREKNLSRFK-----IPKLFVQWRKPFPLTTTGKIR  544 (563)
T ss_pred             EEEEEEECCcccc--ccccchhhcccccccHHHHHHHHhhCcccccc-----cceEEEEEecCCCCCcccchh
Confidence            6788887643100  0000000001123456788888887 488876     66677665 668889999974

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-46  Score=390.81  Aligned_cols=336  Identities=25%  Similarity=0.362  Sum_probs=286.1

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-   97 (461)
                      ....++++++++|||||||.||+|.++|++++.++......+++.++|++++.+|++|++++.. .+.++..|+++++. 
T Consensus       185 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~  264 (546)
T PRK08314        185 HTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMP  264 (546)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecC
Confidence            3456789999999999999999999999999998888888888999999999999999999865 45669999999985 


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.++++++|++.++|.++..+.......                                            
T Consensus       265 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~--------------------------------------------  300 (546)
T PRK08314        265 RWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLA--------------------------------------------  300 (546)
T ss_pred             CCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCcc--------------------------------------------
Confidence              4678999999999999999999987775421000                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceecc
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                     ...+..++.+++||+++++.+ +++.+.++.++++.||+||++......
T Consensus       301 -------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  349 (546)
T PRK08314        301 -------------------------------ERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSN  349 (546)
T ss_pred             -------------------------------ccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecC
Confidence                                           011223488999999999887 556667899999999999998877665


Q ss_pred             CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC---CCcccCCceEeeccC
Q 012526          255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWLNTGDIGWIAPH  331 (461)
Q Consensus       255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~---~~~~~TGDlg~~~~~  331 (461)
                      .......+++|.|.++++++++|++++++++.|+.|||+++|++++.||+++++.+...|..   ++||+|||+|++++ 
T Consensus       350 ~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~-  428 (546)
T PRK08314        350 PPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE-  428 (546)
T ss_pred             CCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcC-
Confidence            55445567899999999999999888999999999999999999999999999998887732   45999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.+++.||.||+|++ +|++|+|.+||++|.++|+|.+++|++.++    +.+.++++++++.       
T Consensus       429 ---------~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~-------  491 (546)
T PRK08314        429 ---------EGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEA-------  491 (546)
T ss_pred             ---------CCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCC-------
Confidence                     8999999999999997 899999999999999999999999999865    3577888876431       


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                             ....+.++++++++++|+.|+     .++++.++++.|...|||+.
T Consensus       492 -------~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKv~  532 (546)
T PRK08314        492 -------RGKTTEEEIIAWAREHMAAYK-----YPRIVEFVDSLPKSGSGKIL  532 (546)
T ss_pred             -------CCCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCCcccee
Confidence                   012456899999999999987     77899999999999999984

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.1e-46  Score=394.41  Aligned_cols=337  Identities=21%  Similarity=0.297  Sum_probs=278.3

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-   97 (461)
                      ....++++++++|||||||.||+|+++|++++.++......+++.++|++++..|++|.++... .+.++..|+++++. 
T Consensus       200 ~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~  279 (570)
T PRK04319        200 EWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDG  279 (570)
T ss_pred             cccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEEC
Confidence            3456789999999999999999999999999988888778888999999999999999888654 55678999998774 


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|+++++|++++.+.+......                                          
T Consensus       280 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------  317 (570)
T PRK04319        280 GRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV------------------------------------------  317 (570)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc------------------------------------------
Confidence               58899999999999999999999988865321100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HHHHhCCeeeeecccCCCccceec
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~~~~~~~v~~~YG~tE~~~~~~~  253 (461)
                                                     ....+.++|.+++||+++++++.+ +.+.++.++++.||+||++..+..
T Consensus       318 -------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~  366 (570)
T PRK04319        318 -------------------------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIA  366 (570)
T ss_pred             -------------------------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEe
Confidence                                           001234459999999999998755 445579999999999999876554


Q ss_pred             cCCC-CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec--CCccccccCCchhhccccCCCCcccCCceEeecc
Q 012526          254 RRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  330 (461)
Q Consensus       254 ~~~~-~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~  330 (461)
                      .... ...++++|+|.++++++++|+ ++.++++|+.|||++++  ++++.||+++++.+...|. +|||+|||++++++
T Consensus       367 ~~~~~~~~~~~~G~p~~g~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~  444 (570)
T PRK04319        367 NYPAMDIKPGSMGKPLPGIEAAIVDD-QGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDE  444 (570)
T ss_pred             cCCCCCCCCCcCcCCCCCCEEEEECC-CCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECC
Confidence            3332 345678999999999999994 56677999999999997  8999999999999999885 89999999999998


Q ss_pred             CCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHH
Q 012526          331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  406 (461)
Q Consensus       331 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~  406 (461)
                                +|.++++||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.+++++.++.      
T Consensus       445 ----------~g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~------  507 (570)
T PRK04319        445 ----------DGYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGY------  507 (570)
T ss_pred             ----------CeeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCC------
Confidence                      8999999999999997 8999999999999999999999999998764    455667765320      


Q ss_pred             HcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          407 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       407 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                             .......++++++++++|+.|+     ++++|.++++.|.+.+||+.
T Consensus       508 -------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKv~  549 (570)
T PRK04319        508 -------EPSEELKEEIRGFVKKGLGAHA-----APREIEFKDKLPKTRSGKIM  549 (570)
T ss_pred             -------CCCHHHHHHHHHHHHHhccccc-----CCcEEEEeCCCCCCCchhhh
Confidence                   0011123578888888888776     77899999999999999973

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-45  Score=389.73  Aligned_cols=331  Identities=22%  Similarity=0.330  Sum_probs=269.3

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE--
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY--   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~--   96 (461)
                      .....++++++++|||||||.||+|++||+++..++......+++.++|+.++.+|++|.+++.       .|.++++  
T Consensus       168 ~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-------~g~~~~~~~  240 (552)
T PRK09274        168 MADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGPA-------LGMTSVIPD  240 (552)
T ss_pred             CCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhhh-------hCCeEEecC
Confidence            3345678999999999999999999999999999888888888999999999999998876653       3444443  


Q ss_pred             --------cchhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526           97 --------TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  168 (461)
Q Consensus        97 --------~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                              +++..+++.++++++|+++++|+++..+.+......                                    
T Consensus       241 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------------------  284 (552)
T PRK09274        241 MDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG------------------------------------  284 (552)
T ss_pred             cccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC------------------------------------
Confidence                    357889999999999999999999998876432211                                    


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh--CCeeeeecccC
Q 012526          169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI--GVKVQVGYGLT  245 (461)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~--~~~v~~~YG~t  245 (461)
                                                             ..+.++|.+++||+++++++ +.+.+.+  ++++++.||+|
T Consensus       285 ---------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~T  325 (552)
T PRK09274        285 ---------------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGAT  325 (552)
T ss_pred             ---------------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEcccccc
Confidence                                                   12334589999999999887 5555667  46999999999


Q ss_pred             CCccceeccCCC----------CCCccccccCCCCeEEEEEeCC--------CCCcCCCCCceEEEEecCCccccccCCc
Q 012526          246 ESSPVIAARRPT----------CNVLGSVGHPINHTEIKIVDAE--------TNEVLPAGSKGIVKVRGSQVMQGYFKNP  307 (461)
Q Consensus       246 E~~~~~~~~~~~----------~~~~~~~G~~~~~~~i~i~d~~--------~~~~~~~g~~Gel~v~~~~~~~gy~~~~  307 (461)
                      |++.++......          .....++|+|+++++++|+|++        ++++++.|+.|||+++|++++.||+++|
T Consensus       326 E~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~  405 (552)
T PRK09274        326 EALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRP  405 (552)
T ss_pred             ccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCCh
Confidence            998765543221          1112368999999999999853        4578899999999999999999999999


Q ss_pred             hhhcccc--CCCC--cccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEE
Q 012526          308 SATKQAL--DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI  383 (461)
Q Consensus       308 ~~~~~~f--~~~~--~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~  383 (461)
                      +.+...|  +.+|  ||+|||+|++++          +|.+++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|+
T Consensus       406 ~~t~~~~~~~~~g~~w~~TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~  474 (552)
T PRK09274        406 EATRLAKIPDGQGDVWHRMGDLGYLDA----------QGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALV  474 (552)
T ss_pred             HHhhhhhcccCCCCcEEEcCCEEEEcc----------CCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEE
Confidence            9988776  3356  999999999998          8999999999999997 89999999999999999999999999


Q ss_pred             eCCCC---eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCC--CCCc
Q 012526          384 GQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV--NFLC  458 (461)
Q Consensus       384 ~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~g~  458 (461)
                      +.+++   .+.++|++.+.                ...+.+++.+.+++.+..+..+  ..+++|.++++.|..  .|||
T Consensus       475 ~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~~~lP~t~~~~GK  536 (552)
T PRK09274        475 GVGVPGAQRPVLCVELEPG----------------VACSKSALYQELRALAAAHPHT--AGIERFLIHPSFPVDIRHNAK  536 (552)
T ss_pred             EeCCCCCceEEEEEEccCc----------------cccchHHHhhhhHHHHHhcCCC--cceeEEeccCCCCcccccccc
Confidence            98654   45677776542                3345567888898888887433  467899999999877  6999


Q ss_pred             cc
Q 012526          459 LA  460 (461)
Q Consensus       459 ~~  460 (461)
                      +.
T Consensus       537 i~  538 (552)
T PRK09274        537 IF  538 (552)
T ss_pred             cc
Confidence            74

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1e-45  Score=388.62  Aligned_cols=336  Identities=29%  Similarity=0.450  Sum_probs=281.0

Q ss_pred             CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh----hcCCCCCcEEEEECChhhhHHHhh-hhhhhccCe
Q 012526           18 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGI   92 (461)
Q Consensus        18 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~   92 (461)
                      +.....++++++++|||||||.||+|++||+++...+.....    .+++.++|++++.+|++|.+++.. .+.++..|+
T Consensus       172 ~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  251 (537)
T PLN02246        172 PEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGA  251 (537)
T ss_pred             CCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCC
Confidence            334456889999999999999999999999999887665433    467889999999999999999865 445688999


Q ss_pred             EEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCC
Q 012526           93 ELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  169 (461)
Q Consensus        93 ~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      ++++.   ++..+++.++++++|++.++|+++..+.+......                                     
T Consensus       252 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------------------------  294 (537)
T PLN02246        252 AILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEK-------------------------------------  294 (537)
T ss_pred             EEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccc-------------------------------------
Confidence            99885   57889999999999999999999887765221100                                     


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCC
Q 012526          170 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTES  247 (461)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~  247 (461)
                                                            ..+..+|.+++||+++++++ +.+.+.+ +..+++.||+||+
T Consensus       295 --------------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~  336 (537)
T PLN02246        295 --------------------------------------YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEA  336 (537)
T ss_pred             --------------------------------------cCccceeEEEEecCcCCHHHHHHHHHHcCCCeEecccccccc
Confidence                                                  11233589999999999887 4555556 6789999999999


Q ss_pred             ccceeccC-----CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccC
Q 012526          248 SPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT  322 (461)
Q Consensus       248 ~~~~~~~~-----~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~T  322 (461)
                      +.+++...     .....++++|+|+++++++++|++++++++.|+.|||+++|+.++.||+++++.+...|+.++||+|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~T  416 (537)
T PLN02246        337 GPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHT  416 (537)
T ss_pred             CcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeee
Confidence            87654322     1123457899999999999999888999999999999999999999999999999999988999999


Q ss_pred             CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcCh
Q 012526          323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDK  398 (461)
Q Consensus       323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~  398 (461)
                      ||+|++++          +|.+++.||.||+|+. +|++|+|.+||+++.+||+|.+++|++.++.    .+.+++++.+
T Consensus       417 GD~~~~~~----------~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  485 (537)
T PLN02246        417 GDIGYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSN  485 (537)
T ss_pred             cceEEEeC----------CCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCC
Confidence            99999998          8999999999999997 8999999999999999999999999997654    4567777653


Q ss_pred             HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          399 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +                ...+.++++++++++|+.|+     .|++|.++++.|.+.+||+.
T Consensus       486 ~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~~~~~P~t~~GKi~  526 (537)
T PLN02246        486 G----------------SEITEDEIKQFVAKQVVFYK-----RIHKVFFVDSIPKAPSGKIL  526 (537)
T ss_pred             C----------------CCCCHHHHHHHHHhhCcCcc-----ccceEEEeccCCCCCcchhh
Confidence            2                34567889999999998887     66799999999999999974

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.5e-46  Score=397.78  Aligned_cols=339  Identities=17%  Similarity=0.205  Sum_probs=274.1

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHH-HHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~   96 (461)
                      .....++|+++++|||||||.||+|+++|++++.+.. .....+++.++|++++.+|++|+.+... .+.++..|+++++
T Consensus       239 ~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~  318 (637)
T PRK00174        239 PEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLM  318 (637)
T ss_pred             ccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEE
Confidence            3445778999999999999999999999999875543 3445578889999999999999988754 5667899999887


Q ss_pred             c-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCC
Q 012526           97 T-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  169 (461)
Q Consensus        97 ~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      .       ++..+++.|+++++|++.++|+++..+.+......                                     
T Consensus       319 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------------  361 (637)
T PRK00174        319 FEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP-------------------------------------  361 (637)
T ss_pred             ECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc-------------------------------------
Confidence            3       47889999999999999999999988876321100                                     


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-HHhC---CeeeeecccC
Q 012526          170 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIG---VKVQVGYGLT  245 (461)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-~~~~---~~v~~~YG~t  245 (461)
                                                          ....+..+|.+++||+++++++.++. +.++   +++++.||+|
T Consensus       362 ------------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~T  405 (637)
T PRK00174        362 ------------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQT  405 (637)
T ss_pred             ------------------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEeccccc
Confidence                                                00123445999999999998875544 4554   7899999999


Q ss_pred             CCccceeccCCC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec--CCccccccCCchhhcccc--CCCCc
Q 012526          246 ESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQAL--DEDGW  319 (461)
Q Consensus       246 E~~~~~~~~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~f--~~~~~  319 (461)
                      |++..+....+.  ...++++|+|+++++++|+| +++++++.|+.|||+|++  |+++.|||++++.+...+  ..+||
T Consensus       406 E~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~  484 (637)
T PRK00174        406 ETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGM  484 (637)
T ss_pred             ccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCE
Confidence            998766543332  23467899999999999999 567889999999999999  689999999998877665  23789


Q ss_pred             ccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEE
Q 012526          320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIV  395 (461)
Q Consensus       320 ~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv  395 (461)
                      |+|||+|++++          +|.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.++|+
T Consensus       485 ~~TGDl~~~d~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv  553 (637)
T PRK00174        485 YFTGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVT  553 (637)
T ss_pred             EECCceEEEcC----------CCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEE
Confidence            99999999998          8999999999999997 8999999999999999999999999998653    5778888


Q ss_pred             cChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          396 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +.++.             .......++|+++++++|+.++     .++.|.++++.|.+.|||+.
T Consensus       554 ~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~  600 (637)
T PRK00174        554 LKGGE-------------EPSDELRKELRNWVRKEIGPIA-----KPDVIQFAPGLPKTRSGKIM  600 (637)
T ss_pred             ECCCC-------------CCCHHHHHHHHHHHHhhcCCcc-----CCCEEEEcCCCCCCCCcchH
Confidence            76430             0011124578888888888776     67799999999999999973

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-45  Score=399.81  Aligned_cols=330  Identities=23%  Similarity=0.328  Sum_probs=271.8

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh-hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY-DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-   97 (461)
                      ...+++++|++|||||||.||+|.++|+++..++..+. ..+++.++|++++..|++|.+++.. .+.++..|+++++. 
T Consensus       141 ~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~  220 (705)
T PRK06060        141 PMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINS  220 (705)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeC
Confidence            34678999999999999999999999999988776653 4578899999999999999988754 55678899998874 


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..++..++++++|+++++|+++..+++....                                            
T Consensus       221 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--------------------------------------------  256 (705)
T PRK06060        221 APVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP--------------------------------------------  256 (705)
T ss_pred             CCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc--------------------------------------------
Confidence               356778899999999999999999877653110                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCcccee
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~  252 (461)
                                                       ..+.++|.+++||+++++.+ +.+.+.+ +.++++.||+||++..+.
T Consensus       257 ---------------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  303 (705)
T PRK06060        257 ---------------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFV  303 (705)
T ss_pred             ---------------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEE
Confidence                                             12234589999999999887 5556667 589999999999987655


Q ss_pred             ccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCC
Q 012526          253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  332 (461)
Q Consensus       253 ~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~  332 (461)
                      .........+++|+|+++++++++|+ ++++++.|+.|||+|+|++++.||+++|+.+.   ..++||+|||+|++++  
T Consensus       304 ~~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~--  377 (705)
T PRK06060        304 SNRVDEWRLGTLGRVLPPYEIRVVAP-DGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDS--  377 (705)
T ss_pred             eccCCCCCcCcccccCCCcEEEEECC-CCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECC--
Confidence            44333345678999999999999995 57889999999999999999999999988653   3579999999999998  


Q ss_pred             CCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHc
Q 012526          333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  408 (461)
Q Consensus       333 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~  408 (461)
                              +|+++++||.||+|++ +|++|++.|||++|.+||+|.+++|++.+++    .+.+++++..+.        
T Consensus       378 --------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~--------  440 (705)
T PRK06060        378 --------DGWVTYRCRADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGA--------  440 (705)
T ss_pred             --------CceEEEecccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEecccc--------
Confidence                    8999999999999997 8999999999999999999999999988653    577888865320        


Q ss_pred             CCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          409 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           .......++++++++++|+.|+     .+.+|.++++.|.+.|||+.
T Consensus       441 -----~~~~~~~~~i~~~l~~~L~~~~-----~P~~i~~v~~iP~t~~GKid  482 (705)
T PRK06060        441 -----TIDGSVMRDLHRGLLNRLSAFK-----VPHRFAVVDRLPRTPNGKLV  482 (705)
T ss_pred             -----CcChHHHHHHHHHHHHhCCCCc-----CCcEEEEeecCCCCcchhhH
Confidence                 0011123578888999998887     66789999999999999974

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-45  Score=381.01  Aligned_cols=332  Identities=24%  Similarity=0.369  Sum_probs=279.4

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhh-hhhhccCeEEEEc-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~-~~~l~~G~~~~~~-   97 (461)
                      ....++++++++|||||||.||+|.++|+++..........+++.++|++++.+|++|..++... +.++..|++++++ 
T Consensus       144 ~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~  223 (496)
T PRK06839        144 VEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPR  223 (496)
T ss_pred             CCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEcc
Confidence            34566889999999999999999999999997766666667788999999999999999998654 4568889998874 


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.++++++|++.++|.++..+.......                                            
T Consensus       224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------  259 (496)
T PRK06839        224 KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE--------------------------------------------  259 (496)
T ss_pred             CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc--------------------------------------------
Confidence              5788999999999999999999998887632110                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccC
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR  255 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  255 (461)
                                                     ...+..+|.+++||+++++.+.+.++..++++.+.||+||++..+....
T Consensus       260 -------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~  308 (496)
T PRK06839        260 -------------------------------TTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLS  308 (496)
T ss_pred             -------------------------------cCCCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCcceEecc
Confidence                                           0123345899999999999885555555999999999999987554332


Q ss_pred             CC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCC
Q 012526          256 PT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  333 (461)
Q Consensus       256 ~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~  333 (461)
                      ..  ....+++|+|.++++++|+|+++ ..++.|+.|||+|+++.++.||+++++.+...+ .+|||+|||++++++   
T Consensus       309 ~~~~~~~~~~~G~p~~~~~~~i~d~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~---  383 (496)
T PRK06839        309 EEDARRKVGSIGKPVLFCDYELIDENK-NKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDE---  383 (496)
T ss_pred             cccccccCCCCcccCCCceEEEECCCc-CCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcC---
Confidence            22  24467899999999999999654 558999999999999999999999999988877 589999999999998   


Q ss_pred             CCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHHcC
Q 012526          334 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS  409 (461)
Q Consensus       334 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~~~  409 (461)
                             +|.+++.||.+|+|+. +|++|+|.+||++|.++|+|.+++|++.+++.    +.++|+++++          
T Consensus       384 -------~g~~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~----------  445 (496)
T PRK06839        384 -------DGFVYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSS----------  445 (496)
T ss_pred             -------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC----------
Confidence                   8999999999999996 89999999999999999999999999987654    6688887643          


Q ss_pred             CCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          410 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       410 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                            ...+.++++++++.+|+.++     ++.+|.++++.|.+.+||+.
T Consensus       446 ------~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~~P~t~~GKi~  485 (496)
T PRK06839        446 ------SVLIEKDVIEHCRLFLAKYK-----IPKEIVFLKELPKNATGKIQ  485 (496)
T ss_pred             ------CCCCHHHHHHHHHhhCcCCC-----CCcEEEEeccCCCCcccccc
Confidence                  34566889999999998886     67889999999999999974

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-45  Score=386.14  Aligned_cols=332  Identities=28%  Similarity=0.454  Sum_probs=274.9

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC--CCC-CcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AEN-GDKFLSMLPPWHVYERAC-GYFIFSRGIELMY   96 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~--~~~-~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~   96 (461)
                      ...++++++++|||||||.||+|+++|+++..++......++  +.. .+++++.+|++|.+++.. .+.++..|...++
T Consensus       203 ~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~  282 (562)
T PRK05677        203 NPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNIL  282 (562)
T ss_pred             CCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEE
Confidence            346789999999999999999999999999877665544433  333 468899999999999865 3445667776655


Q ss_pred             c----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           97 T----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        97 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                      .    ++..+++.++++++|.+.++|+++..+........                                        
T Consensus       283 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------------------  322 (562)
T PRK05677        283 ISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRK----------------------------------------  322 (562)
T ss_pred             ecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCccccc----------------------------------------
Confidence            3    46778999999999999999999987765211000                                        


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccce
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI  251 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~  251 (461)
                                                         ..+.++|.+++||+++++.+ +.+.+.+++++++.||+||++.++
T Consensus       323 -----------------------------------~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  367 (562)
T PRK05677        323 -----------------------------------LDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVV  367 (562)
T ss_pred             -----------------------------------CChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcce
Confidence                                               01223589999999999887 445556799999999999998877


Q ss_pred             eccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          252 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       252 ~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      .........++++|.|.++++++++|+ ++.+++.|+.|||+++|+.++.||+++|+.+...|..++||+|||+|++++ 
T Consensus       368 ~~~~~~~~~~~~vG~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~-  445 (562)
T PRK05677        368 SVNPSQAIQVGTIGIPVPSTLCKVIDD-DGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE-  445 (562)
T ss_pred             eecCccCCCCCccCccCCCCEEEEECC-CCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC-
Confidence            665554556678999999999999995 478899999999999999999999999999999998899999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.+++    .+.+++++.+.        
T Consensus       446 ---------~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~--------  507 (562)
T PRK05677        446 ---------DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPG--------  507 (562)
T ss_pred             ---------CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCC--------
Confidence                     8999999999999997 7999999999999999999999999998754    45566665432        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.++++++++++|+.|+     .++.|.++++.|.+.|||+.
T Consensus       508 --------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~sGKi~  547 (562)
T PRK05677        508 --------ETLTKEQVMEHMRANLTGYK-----VPKAVEFRDELPTTNVGKIL  547 (562)
T ss_pred             --------CCCCHHHHHHHHHHhhhhcc-----CCcEEEEeccCCCCCccccc
Confidence                    34567899999999999987     67889999999999999974

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=5.2e-45  Score=384.12  Aligned_cols=329  Identities=25%  Similarity=0.382  Sum_probs=277.4

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc---
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~---   97 (461)
                      ..++++++++|||||||.||+|+++|++++.++......+++.++|++++.+|++|..++.. .+.++..|+++++.   
T Consensus       194 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~  273 (547)
T PRK13295        194 PGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIW  273 (547)
T ss_pred             CCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCC
Confidence            46689999999999999999999999999988888888888999999999999999998765 55668999999885   


Q ss_pred             chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHH
Q 012526           98 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  177 (461)
Q Consensus        98 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (461)
                      ++..+++.++++++|++.++|+++..+........                                             
T Consensus       274 ~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~---------------------------------------------  308 (547)
T PRK13295        274 DPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG---------------------------------------------  308 (547)
T ss_pred             CHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC---------------------------------------------
Confidence            57889999999999999999999988765321110                                             


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceeccCC
Q 012526          178 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                    ..+.++|.+++||+++++.+ +.+.+.+++++++.||+||++.++.....
T Consensus       309 ------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  358 (547)
T PRK13295        309 ------------------------------RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLD  358 (547)
T ss_pred             ------------------------------CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCC
Confidence                                          12334589999999999887 45556689999999999999876655432


Q ss_pred             C--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          257 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       257 ~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                      .  .....++|+|.++++++|+|+ ++.+++.|+.|||+|+|++++.||+++|+.+...  .+|||+|||+|++++    
T Consensus       359 ~~~~~~~~~~G~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~----  431 (547)
T PRK13295        359 DPDERASTTDGCPLPGVEVRVVDA-DGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDA----  431 (547)
T ss_pred             CcchhccCccccccCCcEEEEECC-CCCCCCCCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcC----
Confidence            2  223467899999999999995 5788899999999999999999999999988766  478999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  410 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~  410 (461)
                            +|.+++.||.+|+|++ +|++|+|.+||++|.+|++|.+++|++.+++    .+.++|++.+.           
T Consensus       432 ------~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------  493 (547)
T PRK13295        432 ------DGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPG-----------  493 (547)
T ss_pred             ------CceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCC-----------
Confidence                  8999999999999997 8999999999999999999999999997543    56677777532           


Q ss_pred             CcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          411 VHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       411 ~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           ...+.+++.+++++ .++.|+     .+.+|.++++.|...+||+.
T Consensus       494 -----~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sgK~~  534 (547)
T PRK13295        494 -----QSLDFEEMVEFLKAQKVAKQY-----IPERLVVRDALPRTPSGKIQ  534 (547)
T ss_pred             -----CCCCHHHHHHHHHhccCcccc-----CCcEEEEeccCCCCCCcccc
Confidence                 23455788888886 577776     66789999999999999974

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=4.7e-45  Score=382.80  Aligned_cols=333  Identities=21%  Similarity=0.343  Sum_probs=278.9

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh--hhhhhccCeEEEE
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMY   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~l~~G~~~~~   96 (461)
                      .....++++++++|||||||.||+|++||+++..++......+.++++|++++.+|++|++++..  .+.++..|+++++
T Consensus       177 ~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~  256 (527)
T TIGR02275       177 FPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVL  256 (527)
T ss_pred             CCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEE
Confidence            34557789999999999999999999999999988888778888999999999999999999864  4566888999888


Q ss_pred             c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      .   ++..+++.+++++++++.++|.++..+.+......                                         
T Consensus       257 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-----------------------------------------  295 (527)
T TIGR02275       257 APDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-----------------------------------------  295 (527)
T ss_pred             CCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-----------------------------------------
Confidence            4   57789999999999999999999987765432110                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                        ..+..+|.+++||++++..+ ..+.+.++.++++.||+||++....
T Consensus       296 ----------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~  341 (527)
T TIGR02275       296 ----------------------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYT  341 (527)
T ss_pred             ----------------------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCcccc
Confidence                                              12234589999999999987 4455668999999999999754332


Q ss_pred             ccC-CCCCCccccccCC-CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeecc
Q 012526          253 ARR-PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  330 (461)
Q Consensus       253 ~~~-~~~~~~~~~G~~~-~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~  330 (461)
                      ... ......+++|+|+ ++..++++| +++++++.|+.|||+++|++++.||+++++.+...|+.++||+|||+|++++
T Consensus       342 ~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~  420 (527)
T TIGR02275       342 RLDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTP  420 (527)
T ss_pred             CCCCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcC
Confidence            211 1223346789999 478999999 5578899999999999999999999999999999998899999999999998


Q ss_pred             CCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHH
Q 012526          331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  406 (461)
Q Consensus       331 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~  406 (461)
                                +|.+++.||.||+|+. +|++|+|.+||++|.+||+|.+++|++.+++    .+.++++++.+       
T Consensus       421 ----------~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-------  482 (527)
T TIGR02275       421 ----------EGYIVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-------  482 (527)
T ss_pred             ----------CccEEEEecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-------
Confidence                      8999999999999996 8999999999999999999999999999754    45677776532       


Q ss_pred             HcCCCcCCccccCcHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          407 RLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       407 ~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ..+.++++++++++ ++.++     .+.++.++++.|.+.+||+.
T Consensus       483 ----------~~~~~~l~~~l~~~~l~~~~-----~P~~i~~v~~iP~t~sGKv~  522 (527)
T TIGR02275       483 ----------ALKAAQLRRFLRERGLAEYK-----LPDRVEFIDSLPLTAVGKID  522 (527)
T ss_pred             ----------CCCHHHHHHHHHhCCCcccc-----CCCEEEEeccCCCCCcccee
Confidence                      35667888888875 77776     67799999999999999974

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.5e-45  Score=383.52  Aligned_cols=328  Identities=23%  Similarity=0.313  Sum_probs=258.8

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCC-CCcEEEEECChhhhHHHhhhhhhhccCeEEEEcc--
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE-NGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~-~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~--   98 (461)
                      ..++|+++++|||||||.||||+++|+++...+..+...+++. ++|++++++|++|.+++...+.++..|+++++.+  
T Consensus       149 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~  228 (525)
T PRK05851        149 PDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTT  228 (525)
T ss_pred             CCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHH
Confidence            4678999999999999999999999999999888888888888 8999999999999999987778899999998853  


Q ss_pred             -----hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           99 -----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        99 -----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                           +..+++.+++++++++...|.++..+........                                         
T Consensus       229 ~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~-----------------------------------------  267 (525)
T PRK05851        229 AFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVS-----------------------------------------  267 (525)
T ss_pred             HHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcccc-----------------------------------------
Confidence                 4578899999999977544433333322110000                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHH---hCC---eeeeecccCC
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA---IGV---KVQVGYGLTE  246 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~---~~~---~v~~~YG~tE  246 (461)
                                                       ...+..+|.+++||+++++++ +++.+.   +|.   .+++.||+||
T Consensus       268 ---------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE  314 (525)
T PRK05851        268 ---------------------------------DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAE  314 (525)
T ss_pred             ---------------------------------CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhh
Confidence                                             011223488999999999876 444443   454   4999999999


Q ss_pred             CccceeccCCC---------------CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhc
Q 012526          247 SSPVIAARRPT---------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  311 (461)
Q Consensus       247 ~~~~~~~~~~~---------------~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~  311 (461)
                      ++..+....+.               ....+++|+|+++++++|+|+++..+++.|+.|||+++|++++.||+++++.+ 
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-  393 (525)
T PRK05851        315 STCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-  393 (525)
T ss_pred             hceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-
Confidence            97665543221               12345799999999999999776677899999999999999999999988643 


Q ss_pred             cccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC---
Q 012526          312 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR---  388 (461)
Q Consensus       312 ~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~---  388 (461)
                          .++||+|||+|+++           +|.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++   
T Consensus       394 ----~~~~~~TGDl~~~~-----------~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~  457 (525)
T PRK05851        394 ----PDDWFPTGDLGYLV-----------DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGS  457 (525)
T ss_pred             ----CCCceeccceEEEE-----------CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCC
Confidence                47899999999885           5999999999999998 8999999999999999999999999987543   


Q ss_pred             -eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCCCCCccc
Q 012526          389 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCLA  460 (461)
Q Consensus       389 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~  460 (461)
                       ...++++...                 ...+.++++++++++|+.+..   ..++++.+++  +.|.+.|||+.
T Consensus       458 ~~~~~~v~~~~-----------------~~~~~~~~~~~~~~~l~~~l~---~~P~~~~~v~~~~lP~t~~GKi~  512 (525)
T PRK05851        458 ARPGLVIAAEF-----------------RGPDEAGARSEVVQRVASECG---VVPSDVVFVAPGSLPRTSSGKLR  512 (525)
T ss_pred             CceeEEEEEEe-----------------cCcchHHHHHHHHHHHHHHhC---CCccEEEEECCCCcCcCcchHHH
Confidence             3445554321                 113456788889999888731   2677899999  89999999974

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.5e-45  Score=375.59  Aligned_cols=328  Identities=26%  Similarity=0.388  Sum_probs=278.1

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~--   97 (461)
                      ...++|+++++|||||||.||+|.++|+++..++..+...+++.++|++++.+|++|..++.. .+.++..|+++++.  
T Consensus       124 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  203 (471)
T PRK07787        124 EPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGR  203 (471)
T ss_pred             CCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCC
Confidence            356789999999999999999999999999998888888888999999999999999999876 45568999999874  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++ ++++.+.++|+++..+.+....                                              
T Consensus       204 ~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~----------------------------------------------  236 (471)
T PRK07787        204 PTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA----------------------------------------------  236 (471)
T ss_pred             CCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc----------------------------------------------
Confidence             5788999999 9999999999999887652100                                              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceeccC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~~  255 (461)
                                                    ...+..+|.+++||+++++.+ +.+.+.++..+++.||+||++...+...
T Consensus       237 ------------------------------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  286 (471)
T PRK07787        237 ------------------------------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRA  286 (471)
T ss_pred             ------------------------------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCC
Confidence                                          012334588999999999887 4555567999999999999987655444


Q ss_pred             CCCCCccccccCCCCeEEEEEeCCCCCcCC-CCC-ceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCC
Q 012526          256 PTCNVLGSVGHPINHTEIKIVDAETNEVLP-AGS-KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  333 (461)
Q Consensus       256 ~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~-~g~-~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~  333 (461)
                      .....++++|+|.++++++|+|++ +.+++ .|+ .|||+++|++++.||+++++.+...|.+++||+|||+|++++   
T Consensus       287 ~~~~~~~~vG~~~~g~~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~---  362 (471)
T PRK07787        287 DGERRPGWVGLPLAGVETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDP---  362 (471)
T ss_pred             CCcccCCcccccCCCcEEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcC---
Confidence            444456789999999999999965 66676 444 899999999999999999999999998899999999999998   


Q ss_pred             CCcccccCCeEEEeccc-cceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHc
Q 012526          334 RGRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  408 (461)
Q Consensus       334 ~~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~  408 (461)
                             ||.+++.||. ||+++. +|++|+|.+||++|..++.|.+++|++.++.    .+.+++++.           
T Consensus       363 -------dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~-----------  423 (471)
T PRK07787        363 -------DGMHRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA-----------  423 (471)
T ss_pred             -------CCCEEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC-----------
Confidence                   8999999996 889996 8999999999999999999999999998653    566777763           


Q ss_pred             CCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          409 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                             ...+.+++.++++++|+.++     .|.+|.++++.|...+||+.
T Consensus       424 -------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~~~~GKi~  463 (471)
T PRK07787        424 -------DDVAADELIDFVAQQLSVHK-----RPREVRFVDALPRNAMGKVL  463 (471)
T ss_pred             -------CCCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCCCcccc
Confidence                   23567889999999999886     66789999999999999974

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.3e-45  Score=382.59  Aligned_cols=328  Identities=22%  Similarity=0.315  Sum_probs=275.1

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE---cch
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---TAV   99 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~---~~~   99 (461)
                      .+++.++++|||||||.||+|.++|+++..+...+...+.+..++++++.+|++|++++...+.++..|+++++   +++
T Consensus       194 ~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~  273 (537)
T PRK13382        194 TGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDP  273 (537)
T ss_pred             CCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCCcCH
Confidence            46789999999999999999999999988887777777888899999999999999998777778888999887   468


Q ss_pred             hhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHH
Q 012526          100 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  179 (461)
Q Consensus       100 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (461)
                      ..+++.++++++|++.++|+++..+.+.......                                              
T Consensus       274 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----------------------------------------------  307 (537)
T PRK13382        274 EATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRN----------------------------------------------  307 (537)
T ss_pred             HHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcc----------------------------------------------
Confidence            8999999999999999999999888653211000                                              


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceeccCCC-
Q 012526          180 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-  257 (461)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-  257 (461)
                                                 ...+.++|.+++||+++++++ ..+.+.++..+++.||+||++.++..+... 
T Consensus       308 ---------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  360 (537)
T PRK13382        308 ---------------------------RYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADL  360 (537)
T ss_pred             ---------------------------cCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHh
Confidence                                       011223589999999998876 666677888999999999998766544322 


Q ss_pred             CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcc
Q 012526          258 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  337 (461)
Q Consensus       258 ~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~  337 (461)
                      ...++++|+|.++++++++|+ ++++++.|+.|||+++|++++.||+  ++.+.. | .+|||+|||++++++       
T Consensus       361 ~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~-------  428 (537)
T PRK13382        361 RAAPDTAGRPAEGTEIRILDQ-DFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDE-------  428 (537)
T ss_pred             ccCCCCccccCcCcEEEEECC-CCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeC-------
Confidence            245678999999999999995 5788899999999999999999998  444443 3 379999999999998       


Q ss_pred             cccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCcC
Q 012526          338 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  413 (461)
Q Consensus       338 ~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  413 (461)
                         +|++++.||.||+|+. +|++|++.+||++|.+||+|.+++|++.+++    .+.++|++.++              
T Consensus       429 ---~g~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~--------------  490 (537)
T PRK13382        429 ---NGRLFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPG--------------  490 (537)
T ss_pred             ---CCcEEEeccccceeEE-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCC--------------
Confidence               8999999999999996 8999999999999999999999999998765    36678877543              


Q ss_pred             CccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          414 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       414 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                        ...+.++++++++++|+.|+     .++++.++++.|...+||+.
T Consensus       491 --~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~gK~~  530 (537)
T PRK13382        491 --ASATPETLKQHVRDNLANYK-----VPRDIVVLDELPRGATGKIL  530 (537)
T ss_pred             --CCCCHHHHHHHHHHhccCCC-----CCcEEEEeccCCCCCCCCCc
Confidence              23566889999999999887     66789999999999999974

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5e-45  Score=390.53  Aligned_cols=339  Identities=22%  Similarity=0.260  Sum_probs=268.9

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---   97 (461)
                      ...++++++++|||||||.||||++||+++..++......+++.++|++++++|++|.+++...+.++..|+++++.   
T Consensus       176 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~  255 (631)
T PRK07769        176 EANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPA  255 (631)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChH
Confidence            35678999999999999999999999999998888777888899999999999999999998777777788888764   


Q ss_pred             ----chhhHHHHHhHhCC---cEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           98 ----AVRNLKDDLQRYQP---HYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                          ++..+++.++++++   +.+.++|.++..+.........                                     
T Consensus       256 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~-------------------------------------  298 (631)
T PRK07769        256 AFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKD-------------------------------------  298 (631)
T ss_pred             HHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchh-------------------------------------
Confidence                35567888888876   7888899887666432000000                                     


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh---C---Ceeeeecc
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---G---VKVQVGYG  243 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~---~---~~v~~~YG  243 (461)
                                                       .+-...+.++|.+++||+++++++ +.+.+.+   |   ..+++.||
T Consensus       299 ---------------------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG  345 (631)
T PRK07769        299 ---------------------------------GEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYG  345 (631)
T ss_pred             ---------------------------------cccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccc
Confidence                                             000012344588999999998876 5565655   3   35999999


Q ss_pred             cCCCccceeccCCCC---------------------------CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec
Q 012526          244 LTESSPVIAARRPTC---------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG  296 (461)
Q Consensus       244 ~tE~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~  296 (461)
                      +||++..++......                           ....++|+|.++..++++|++++++++.|+.|||+|+|
T Consensus       346 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~g  425 (631)
T PRK07769        346 MAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHG  425 (631)
T ss_pred             hhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecC
Confidence            999876655432211                           01247899999999999998889999999999999999


Q ss_pred             CCccccccCCchhhccccCC-----------------CCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCc
Q 012526          297 SQVMQGYFKNPSATKQALDE-----------------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG  359 (461)
Q Consensus       297 ~~~~~gy~~~~~~~~~~f~~-----------------~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G  359 (461)
                      |+++.|||++++.+++.|..                 ++||+|||+|+++           +|+++|+||.||+|++ +|
T Consensus       426 p~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-----------dG~l~i~GR~~d~Ik~-~G  493 (631)
T PRK07769        426 NNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-----------DGELYITGRVKDLVII-DG  493 (631)
T ss_pred             CCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-----------CCEEEEEcccccEEEE-CC
Confidence            99999999999999888842                 4899999999984           6999999999999997 89


Q ss_pred             eeecchhHHHHHhc-CccccE--EEEEeCCCC-----------------------eeEEEEEcChHHHHHHHHHcCCCcC
Q 012526          360 ENVEPLELEEAALR-SSLIRQ--IVVIGQDQR-----------------------RPGAIIVPDKEEVLMAAKRLSIVHA  413 (461)
Q Consensus       360 ~~v~~~eIE~~l~~-~p~V~~--a~V~~~~~~-----------------------~~~a~vv~~~~~~~~~~~~~~~~~~  413 (461)
                      ++|+|.|||++|.+ ||+|.+  ++|++.+++                       .+.+++++.++              
T Consensus       494 ~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~--------------  559 (631)
T PRK07769        494 RNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPG--------------  559 (631)
T ss_pred             eeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCc--------------
Confidence            99999999999997 899998  899988772                       35566665432              


Q ss_pred             CccccCcHHHHHHHHHHHHHH-hccCCCccccEEEec--CCCCCCCCccc
Q 012526          414 DASELSKEKTISLLYGELRKW-TSKCSFQIGPIHVVD--EPFTVNFLCLA  460 (461)
Q Consensus       414 ~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~--~~~~~~~g~~~  460 (461)
                       ....+.++|.++++++|..+ +    ..++++.+++  +.|.+.+||+.
T Consensus       560 -~~~~~~~~l~~~~~~~l~~~~~----~~p~~~~~v~~~~lP~t~~GKi~  604 (631)
T PRK07769        560 -AHKLDPQPIADDIRAAIAVRHG----VTVRDVLLVPAGSIPRTSSGKIA  604 (631)
T ss_pred             -cccccHHHHHHHHHHHHHHHcC----CCccEEEEECCCccccCCCcHHH
Confidence             02356789999999999963 3    1356888887  68999999973

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-44  Score=373.52  Aligned_cols=321  Identities=24%  Similarity=0.302  Sum_probs=272.8

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---ch
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV   99 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---~~   99 (461)
                      ..+++++++|||||||.||+|+++|++++.++......+++.++|+++...|++|..++...+.++..|+++++.   ++
T Consensus       141 ~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~  220 (487)
T PRK07638        141 VQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIP  220 (487)
T ss_pred             CCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCH
Confidence            346789999999999999999999999998888888888899999999999999998877777789999999885   58


Q ss_pred             hhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHH
Q 012526          100 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  179 (461)
Q Consensus       100 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (461)
                      ..+++.++++++|++.++|+++..+.+...                                                  
T Consensus       221 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------------------------------  250 (487)
T PRK07638        221 NQVLDKLETENISVMYTVPTMLESLYKENR--------------------------------------------------  250 (487)
T ss_pred             HHHHHHHHHcCCeEEEeCcHHHHHHHhCcC--------------------------------------------------
Confidence            899999999999999999999988865300                                                  


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccceeccCCC
Q 012526          180 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT  257 (461)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~  257 (461)
                                                   .....+.++++|+.+++.. ..+.+.+ +..+++.||+||++.++......
T Consensus       251 -----------------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  301 (487)
T PRK07638        251 -----------------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEE  301 (487)
T ss_pred             -----------------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccc
Confidence                                         0011145677888888776 5555666 78999999999999876654422


Q ss_pred             -CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCc
Q 012526          258 -CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  336 (461)
Q Consensus       258 -~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~  336 (461)
                       ....+++|+|+++++++|+| +.+.++++|+.|||+++|+.++.||++++..+...+ .+|||+|||++++++      
T Consensus       302 ~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~------  373 (487)
T PRK07638        302 SERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDE------  373 (487)
T ss_pred             cCCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcC------
Confidence             23457899999999999999 458889999999999999999999999988776655 689999999999998      


Q ss_pred             ccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCc
Q 012526          337 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  412 (461)
Q Consensus       337 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  412 (461)
                          +|.+++.||.+|+|++ +|++|+|.+||+++.+||+|.+++|++.+++    .+.++++.                
T Consensus       374 ----~g~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----------------  432 (487)
T PRK07638        374 ----EGFIYIVGREKNMILF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----------------  432 (487)
T ss_pred             ----CCeEEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----------------
Confidence                8999999999999997 8999999999999999999999999998765    34455542                


Q ss_pred             CCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          413 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       413 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                          ....++++++++++|+.|+     +++++.++++.|...+||+.
T Consensus       433 ----~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~GKv~  471 (487)
T PRK07638        433 ----SATKQQLKSFCLQRLSSFK-----IPKEWHFVDEIPYTNSGKIA  471 (487)
T ss_pred             ----CCCHHHHHHHHHHHhhccc-----CCcEEEEecccCCCCccccc
Confidence                2356789999999999886     66789999999999999974

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-44  Score=380.19  Aligned_cols=337  Identities=23%  Similarity=0.276  Sum_probs=265.7

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh----hhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY----DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY   96 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~----~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~   96 (461)
                      ...++++++++|||||||.||+|.++|+++.++.....    ..+....++++++.+|++|..++...+.++..|++++.
T Consensus       165 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~  244 (540)
T PRK05857        165 DQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT  244 (540)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEe
Confidence            34678999999999999999999999999977654332    12345678899999999999998877788888998877


Q ss_pred             c--chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           97 T--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        97 ~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                      .  ++..+++.++++++|.+.++|+++..+........                                          
T Consensus       245 ~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~------------------------------------------  282 (540)
T PRK05857        245 GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN------------------------------------------  282 (540)
T ss_pred             cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC------------------------------------------
Confidence            3  57789999999999999999999988876421110                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceecc
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                       ..+..+|.+++||++++....++.+.+++++++.||+||++......
T Consensus       283 ---------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~  329 (540)
T PRK05857        283 ---------------------------------ATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETGCTALCL  329 (540)
T ss_pred             ---------------------------------CcCccceEEEEcCccCCchhHHHHHHhCCeeecccCCCcCCceeeec
Confidence                                             12334588999999987766667777899999999999998654332


Q ss_pred             CCC-----CCCccccccCCCCeEEEEEeCCCCCcC-----CCCCceEEEEecCCccccccCCchhhccccCCCCcccCCc
Q 012526          255 RPT-----CNVLGSVGHPINHTEIKIVDAETNEVL-----PAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  324 (461)
Q Consensus       255 ~~~-----~~~~~~~G~~~~~~~i~i~d~~~~~~~-----~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGD  324 (461)
                      ...     ....+++|+|.++++++|+|+++..++     +.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||
T Consensus       330 ~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGD  408 (540)
T PRK05857        330 PTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGD  408 (540)
T ss_pred             ccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccc
Confidence            221     124578999999999999996655443     457899999999999999999999999888 489999999


Q ss_pred             eEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHH
Q 012526          325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  400 (461)
Q Consensus       325 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~  400 (461)
                      +|++++          +|.+++.||.||+|++ +|++|+|.+||++|..||+|.+|+|++.++.    .+.++++..++ 
T Consensus       409 lg~~d~----------~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~-  476 (540)
T PRK05857        409 LLERRE----------DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAE-  476 (540)
T ss_pred             eEEEcC----------CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCC-
Confidence            999998          8999999999999997 8999999999999999999999999998764    34455554321 


Q ss_pred             HHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          401 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                    ......+++++.+++.+.+...+. .+++++.++++.|.+.|||+.
T Consensus       477 --------------~~~~~~~~l~~~~~~~~~~~l~~~-~~P~~v~~~~~iP~t~~GKi~  521 (540)
T PRK05857        477 --------------LDESAARALKHTIAARFRRESEPM-ARPSTIVIVTDIPRTQSGKVM  521 (540)
T ss_pred             --------------CChhhHHHHHHHHHHHHHhhhccc-cCCeEEEEhhcCCCCCCccee
Confidence                          011123445555554444332222 278999999999999999974

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3e-44  Score=372.40  Aligned_cols=328  Identities=27%  Similarity=0.390  Sum_probs=279.5

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      ...+++++++++|||||||.||+|++||+++...+......++++++|++++.+|++|++++...+.++..|+++++.  
T Consensus       136 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~  215 (483)
T PRK03640        136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEK  215 (483)
T ss_pred             CCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCC
Confidence            345678999999999999999999999999988877777778999999999999999999988777888899999885  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++|++.++|+++..+.......                                             
T Consensus       216 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---------------------------------------------  250 (483)
T PRK03640        216 FDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG---------------------------------------------  250 (483)
T ss_pred             CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc---------------------------------------------
Confidence             5788999999999999999999998886532110                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                     .....+|.+++||+++++...+....+++++++.||+||++..+.....
T Consensus       251 -------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~  299 (483)
T PRK03640        251 -------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTLSP  299 (483)
T ss_pred             -------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCcccccccccCc
Confidence                                           0112348999999999998866666679999999999998764433222


Q ss_pred             C--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          257 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       257 ~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                      .  ....+++|+|.+++++++.++  +.+++.|+.|||+++|++++.||+++++.+...| .++||+|||++++++    
T Consensus       300 ~~~~~~~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~----  372 (483)
T PRK03640        300 EDALTKLGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDE----  372 (483)
T ss_pred             ccccccCCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcC----
Confidence            2  245688999999999999984  3788999999999999999999999999998888 589999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  410 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~  410 (461)
                            +|.+++.||.||+++. +|++|++.+||+++.++++|.+++|++.+++    .+.+++++.             
T Consensus       373 ------~g~l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~-------------  432 (483)
T PRK03640        373 ------EGFLYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS-------------  432 (483)
T ss_pred             ------CCCEEEeecccCeEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC-------------
Confidence                  8999999999999996 8999999999999999999999999988764    345556643             


Q ss_pred             CcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          411 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       411 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           ...+.++++++++++|+.|+     .+++|.++++.|.+.+||+.
T Consensus       433 -----~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gK~~  472 (483)
T PRK03640        433 -----GEVTEEELRHFCEEKLAKYK-----VPKRFYFVEELPRNASGKLL  472 (483)
T ss_pred             -----CCCCHHHHHHHHHHhccCCC-----CCcEEEEeCCCCCCCcccee
Confidence                 34567889999999998886     67899999999999999974

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-44  Score=378.52  Aligned_cols=330  Identities=23%  Similarity=0.337  Sum_probs=274.3

Q ss_pred             CCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhh-hhhhccCeEEEEc-----
Q 012526           24 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-----   97 (461)
Q Consensus        24 ~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~-~~~l~~G~~~~~~-----   97 (461)
                      ++|+++++|||||||.||+|.++|+++...+......+++.++|++++.+|++|.+++... +.++..|++++++     
T Consensus       175 ~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~  254 (534)
T PRK05852        175 RPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRF  254 (534)
T ss_pred             CCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCc
Confidence            4678999999999999999999999999988888888889999999999999999998764 4457888888763     


Q ss_pred             chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHH
Q 012526           98 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  177 (461)
Q Consensus        98 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (461)
                      ++..+++.++++++|.+.++|+++..+.+......                                             
T Consensus       255 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------  289 (534)
T PRK05852        255 SAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP---------------------------------------------  289 (534)
T ss_pred             CHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc---------------------------------------------
Confidence            46789999999999999999999988876421110                                             


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceeccCC
Q 012526          178 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                  .......+|.++++|+++++.+ +.+.+.++..+++.||+||++..++....
T Consensus       290 ----------------------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  341 (534)
T PRK05852        290 ----------------------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQI  341 (534)
T ss_pred             ----------------------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCc
Confidence                                        0012334599999999998887 44556689999999999999876654322


Q ss_pred             C-----CCCccccccC--CCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          257 T-----CNVLGSVGHP--INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       257 ~-----~~~~~~~G~~--~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      .     .....+.|.+  .++++++++|+ +++++++|+.|||+|+|+.++.||+++++.+...| .++||+|||+|+++
T Consensus       342 ~~~~~~~~~~~~~g~~g~~~g~~~~i~d~-~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d  419 (534)
T PRK05852        342 EGIGQTENPVVSTGLVGRSTGAQIRIVGS-DGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLS  419 (534)
T ss_pred             cccccccCcccccccCCCCCCCeEEEECC-CCCCCCCCCceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEe
Confidence            1     1111233444  69999999995 47889999999999999999999999999999888 47999999999999


Q ss_pred             cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHH
Q 012526          330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  405 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~  405 (461)
                      +          ||.+++.||.+|+|+. +|.+|+|.+||+++.+||+|.+|+|++.+++    .+.+++++++.      
T Consensus       420 ~----------dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~------  482 (534)
T PRK05852        420 A----------AGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRES------  482 (534)
T ss_pred             C----------CCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCC------
Confidence            8          8999999999999996 8999999999999999999999999999764    46677776432      


Q ss_pred             HHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          406 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ...+.+++.++++++|+.|+     +++.|.++++.|...+||+.
T Consensus       483 ----------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKi~  522 (534)
T PRK05852        483 ----------APPTAEELVQFCRERLAAFE-----IPASFQEASGLPHTAKGSLD  522 (534)
T ss_pred             ----------CCCCHHHHHHHHHHhccccc-----CCeEEEEhhhcCCCCCcccc
Confidence                      33567889999999998886     67789999999999999974

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-44  Score=376.21  Aligned_cols=334  Identities=31%  Similarity=0.494  Sum_probs=286.0

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT   97 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~   97 (461)
                      .....++++++++|||||||.||+|.++|+++...+..+...+++.++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus       160 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~  239 (513)
T PRK07656        160 APEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL  239 (513)
T ss_pred             cCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec
Confidence            34457789999999999999999999999999988888888889999999999999999999876 45568899998874


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|+++..+.+......                                          
T Consensus       240 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------------------  277 (513)
T PRK07656        240 PVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA------------------------------------------  277 (513)
T ss_pred             CcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC------------------------------------------
Confidence               57889999999999999999999988876422110                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCC-eeeeecccCCCcccee
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIA  252 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~-~v~~~YG~tE~~~~~~  252 (461)
                                                       ..+..+|.+++||+++++.+ +.+.+.++. .+++.||+||++++++
T Consensus       278 ---------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  324 (513)
T PRK07656        278 ---------------------------------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTT  324 (513)
T ss_pred             ---------------------------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCcee
Confidence                                             12334589999999999887 556667888 8999999999988777


Q ss_pred             ccCCCCC---CccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          253 ARRPTCN---VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       253 ~~~~~~~---~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      .+.....   .++++|.|.++++++++| +++.+++.|+.|||+++++.++.||++++..+...+..++||+|||+|+++
T Consensus       325 ~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~  403 (513)
T PRK07656        325 FNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLD  403 (513)
T ss_pred             ecCccccccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEc
Confidence            6654332   257899999999999999 458899999999999999999999999999999888779999999999999


Q ss_pred             cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHH
Q 012526          330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  405 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~  405 (461)
                      +          +|.++++||.||++++ +|.++++.+||++|.++++|.+++|++.+++    .+.++++.+..      
T Consensus       404 ~----------~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~------  466 (513)
T PRK07656        404 E----------EGYLYIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPG------  466 (513)
T ss_pred             C----------CeeEEEEecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCC------
Confidence            8          8999999999999997 8999999999999999999999999987654    45677776532      


Q ss_pred             HHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          406 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ...+.++++++++++|+.+.     .+..+.++++.|.+.+||+.
T Consensus       467 ----------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~gK~~  506 (513)
T PRK07656        467 ----------AELTEEELIAYCREHLAKYK-----VPRSIEFLDELPKNATGKVL  506 (513)
T ss_pred             ----------CCCCHHHHHHHHHhhccccc-----CCCEEEEecCCCCCCcccee
Confidence                      34567889999999998886     66789999999999999974

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=3.4e-44  Score=376.99  Aligned_cols=334  Identities=21%  Similarity=0.328  Sum_probs=280.7

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh--hhhhhccCeEEEE
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMY   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~l~~G~~~~~   96 (461)
                      .....++++++++|||||||.||+|++||+++..++......+++.++|++++.+|++|.+++..  .+.++..|+++++
T Consensus       176 ~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~  255 (536)
T PRK10946        176 ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVL  255 (536)
T ss_pred             cCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEE
Confidence            34457789999999999999999999999999999888888889999999999999999988753  4667889999887


Q ss_pred             c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      .   ++..++..+++++++++.++|..+..+++......                                         
T Consensus       256 ~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----------------------------------------  294 (536)
T PRK10946        256 APDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG-----------------------------------------  294 (536)
T ss_pred             CCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccC-----------------------------------------
Confidence            4   57788999999999999999999988876431110                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                      ....+.+++.+++||+++++.+ +.+.+.+++++++.||+||++....
T Consensus       295 --------------------------------~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~  342 (536)
T PRK10946        295 --------------------------------SRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYT  342 (536)
T ss_pred             --------------------------------ccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeee
Confidence                                            0022344589999999999887 5555667999999999999754432


Q ss_pred             cc-CCCCCCccccccCC-CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeecc
Q 012526          253 AR-RPTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  330 (461)
Q Consensus       253 ~~-~~~~~~~~~~G~~~-~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~  330 (461)
                      .. .......+++|+|+ +++.++++| +++++++.|+.|||+++|+.++.||+++++.+...|+.++||+|||+|++++
T Consensus       343 ~~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~  421 (536)
T PRK10946        343 RLDDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDP  421 (536)
T ss_pred             cCCCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECC
Confidence            21 12223457899998 789999999 5678999999999999999999999999999999998899999999999998


Q ss_pred             CCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHH
Q 012526          331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  406 (461)
Q Consensus       331 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~  406 (461)
                                +|.+++.||.+|+++. +|++|+|.+||++|.+||+|.+++|++.+++    .+.+++++++        
T Consensus       422 ----------~G~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~--------  482 (536)
T PRK10946        422 ----------DGYITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKE--------  482 (536)
T ss_pred             ----------CCcEEEeccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCC--------
Confidence                      8999999999999996 8999999999999999999999999998754    4567777642        


Q ss_pred             HcCCCcCCccccCcHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          407 RLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       407 ~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ..+.++++++++++ ++.|+     .+..|.++++.|...+||+.
T Consensus       483 ----------~~~~~~l~~~~~~~~l~~~~-----~P~~~~~~~~iP~t~~GKv~  522 (536)
T PRK10946        483 ----------PLKAVQLRRFLREQGIAEFK-----LPDRVECVDSLPLTAVGKVD  522 (536)
T ss_pred             ----------CCCHHHHHHHHHhCCccccc-----cCcEEEEeccCCCCCCCccc
Confidence                      25667889999876 88877     67899999999999999974

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4e-44  Score=376.70  Aligned_cols=329  Identities=22%  Similarity=0.373  Sum_probs=276.8

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc---
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~---   97 (461)
                      ..++++++++|||||||.||+|+++|+++...+......+++..+|++++.+|++|.+++.. .+.++..|+++++.   
T Consensus       192 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~  271 (538)
T TIGR03208       192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIW  271 (538)
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCcc
Confidence            46789999999999999999999999999998888888888999999999999999988765 55668889988874   


Q ss_pred             chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHH
Q 012526           98 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  177 (461)
Q Consensus        98 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (461)
                      ++..+++.+++++++++.++|.++..+........                                             
T Consensus       272 ~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~---------------------------------------------  306 (538)
T TIGR03208       272 NPARAAELIRETGVTFTMASTPFLTDLCRAVKESG---------------------------------------------  306 (538)
T ss_pred             CHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC---------------------------------------------
Confidence            68899999999999999999999988765322110                                             


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceeccCC
Q 012526          178 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                    ..+..+|.+++||+++++.+ ..+.+.+++.+++.||+||++.+......
T Consensus       307 ------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~  356 (538)
T TIGR03208       307 ------------------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPD  356 (538)
T ss_pred             ------------------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcc
Confidence                                          12234588999999998887 55566689999999999999877655443


Q ss_pred             CC--CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          257 TC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       257 ~~--~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                      ..  ....++|+|.++++++++|+ ++.+++.|+.|||+++|+.++.||+++|+.+.  ++.++||+|||+|++++    
T Consensus       357 ~~~~~~~~~~G~~~~g~~v~i~~~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~----  429 (538)
T TIGR03208       357 DALEKASTTDGRPLPGVEVKVIDA-NGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDA----  429 (538)
T ss_pred             cchhhccCcccccCCCCEEEEECC-CCCCCcCCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECC----
Confidence            21  22357899999999999994 57888999999999999999999999988765  34689999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  410 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~  410 (461)
                            +|.++++||.+|+|+. +|++|+|.+||++|.+||+|.+++|++.+++    .+.+++++..+           
T Consensus       430 ------~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~-----------  491 (538)
T TIGR03208       430 ------EGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPG-----------  491 (538)
T ss_pred             ------CCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCC-----------
Confidence                  8999999999999996 8999999999999999999999999998654    46678877532           


Q ss_pred             CcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          411 VHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       411 ~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           ...+.+++++++++ +++.++     .+++|.++++.|.+.+||+.
T Consensus       492 -----~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~gKv~  532 (538)
T TIGR03208       492 -----CTLDFAAMVAFLKAQKVALQY-----IPERLEVVDALPATPAGKIQ  532 (538)
T ss_pred             -----CCCCHHHHHHHHHhcchhhcc-----CCcEEEEeccCCCCCccccc
Confidence                 34566789999985 688876     66789999999999999974

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=2.3e-44  Score=378.76  Aligned_cols=328  Identities=23%  Similarity=0.284  Sum_probs=276.4

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---   97 (461)
                      ...++++++++|||||||.||+|.++|+++..........+++++++++++.+|++|.+++...+.++..|+++++.   
T Consensus       176 ~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~  255 (542)
T PRK06155        176 AVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRF  255 (542)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCCC
Confidence            44678999999999999999999999999988877777888999999999999999999998778889999999885   


Q ss_pred             chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHH
Q 012526           98 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  177 (461)
Q Consensus        98 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (461)
                      ++..+++.++++++|.+.++|+++..+.+......                                             
T Consensus       256 ~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------------------------  290 (542)
T PRK06155        256 SASGFWPAVRRHGATVTYLLGAMVSILLSQPARES---------------------------------------------  290 (542)
T ss_pred             CHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc---------------------------------------------
Confidence            58899999999999999999998877765321100                                             


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchh-HHHHHHHhCCeeeeecccCCCccceeccCC
Q 012526          178 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~-~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                    ....+++.++.||  +++. ...+.+.+++++++.||+||++..+.... 
T Consensus       291 ------------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-  337 (542)
T PRK06155        291 ------------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-  337 (542)
T ss_pred             ------------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-
Confidence                                          1122346666555  3444 46677778999999999999988766543 


Q ss_pred             CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecC---CccccccCCchhhccccCCCCcccCCceEeeccCCC
Q 012526          257 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  333 (461)
Q Consensus       257 ~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~  333 (461)
                      .....+++|.+.++++++|+|+ .+++++.|+.|||+++++   .++.||+++++.+...| .++||+|||+|++++   
T Consensus       338 ~~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~---  412 (542)
T PRK06155        338 GSQRPGSMGRLAPGFEARVVDE-HDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDA---  412 (542)
T ss_pred             CCCCCCCcCccCCCceEEEECC-CCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcC---
Confidence            2345678999999999999994 588899999999999998   69999999999998888 589999999999998   


Q ss_pred             CCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHHHHHcC
Q 012526          334 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLS  409 (461)
Q Consensus       334 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~~~~~~  409 (461)
                             +|.+++.||.+|+|+. +|++|+|.+||+++.+||+|.+++|++.++    ..+.+++++..+          
T Consensus       413 -------dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~----------  474 (542)
T PRK06155        413 -------DGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDG----------  474 (542)
T ss_pred             -------CceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCC----------
Confidence                   8999999999999996 899999999999999999999999998865    356677776532          


Q ss_pred             CCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          410 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       410 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                            ...+.++++++++++|+.++     .+..|.++++.|.+.+||+.
T Consensus       475 ------~~~~~~~~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKi~  514 (542)
T PRK06155        475 ------TALEPVALVRHCEPRLAYFA-----VPRYVEFVAALPKTENGKVQ  514 (542)
T ss_pred             ------CCCCHHHHHHHHHhhCcCcc-----CCcEEEEeccCCCCccccee
Confidence                  34577899999999998887     66789999999999999974

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=3.2e-44  Score=374.21  Aligned_cols=332  Identities=28%  Similarity=0.423  Sum_probs=280.8

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-   97 (461)
                      ....++++++++|||||||.||+|.++|+++...+......+++.++|++++.+|++|..++.. .+.++..|+++++. 
T Consensus       151 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~  230 (504)
T PRK07514        151 VPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLP  230 (504)
T ss_pred             ccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECC
Confidence            3456789999999999999999999999999998888777888999999999999999999865 45668999999885 


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.+  .++|.+.++|.++..++......                                            
T Consensus       231 ~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------  264 (504)
T PRK07514        231 KFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLT--------------------------------------------  264 (504)
T ss_pred             CCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCC--------------------------------------------
Confidence              567788888  37999999999998776521000                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceecc
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                     ...+.++|.+++||+++++.+ +.+.+.++.++++.||+||++......
T Consensus       265 -------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  313 (504)
T PRK07514        265 -------------------------------REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNP  313 (504)
T ss_pred             -------------------------------cccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCC
Confidence                                           012234589999999998877 555666789999999999998665543


Q ss_pred             CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                      .......+++|.|+++++++++|++++.+++.|+.|||+++|+.++.||+++++.+...|..++||+|||++++++    
T Consensus       314 ~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----  389 (504)
T PRK07514        314 YDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE----  389 (504)
T ss_pred             ccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcC----
Confidence            3333445789999999999999988899999999999999999999999999999999998789999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  410 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~  410 (461)
                            +|.+++.||.||+|+. +|++|+|.+||+++.++++|.+++|++.+++    .+.+++++.++           
T Consensus       390 ------~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~-----------  451 (504)
T PRK07514        390 ------RGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPG-----------  451 (504)
T ss_pred             ------CccEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCC-----------
Confidence                  8999999999999997 8999999999999999999999999998653    46677776532           


Q ss_pred             CcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          411 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       411 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           ...+.+++.++++++|+.++     .+++|.++++.|.+.+||+.
T Consensus       452 -----~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~p~t~~gK~~  491 (504)
T PRK07514        452 -----AALDEAAILAALKGRLARFK-----QPKRVFFVDELPRNTMGKVQ  491 (504)
T ss_pred             -----CCCCHHHHHHHHHhhcccCC-----CCcEEEEeccCCCCCCccee
Confidence                 33467889999999998886     66789999999999999974

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-44  Score=371.50  Aligned_cols=332  Identities=25%  Similarity=0.365  Sum_probs=272.5

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhh-hhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~-~~l~~G~~~~~~--   97 (461)
                      ...++++++++|||||||.||+|.+||+++...+..+.....+.++|++++.+|++|++++...+ .++..|+++++.  
T Consensus       131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~  210 (488)
T PRK09088        131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG  210 (488)
T ss_pred             CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence            34568899999999999999999999999988877777777788999999999999999987654 457888888874  


Q ss_pred             -chhhHHHHHh--HhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 -AVRNLKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 -~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                       .+..++..+.  ++++|++.++|.++..+.......                                           
T Consensus       211 ~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------  247 (488)
T PRK09088        211 FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFD-------------------------------------------  247 (488)
T ss_pred             CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcC-------------------------------------------
Confidence             4667777775  478999999999987775421000                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceecc
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                      ...+.+++.+++||++++......+...++++++.||+||++......
T Consensus       248 --------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  295 (488)
T PRK09088        248 --------------------------------AAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMS  295 (488)
T ss_pred             --------------------------------ccccccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccccccC
Confidence                                            012234589999999998765333334489999999999998754322


Q ss_pred             CC---CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          255 RP---TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       255 ~~---~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      ..   .....+++|.|.++++++++| +++.+++.|+.|||+|+|++++.||+++++.++..|+.++||+|||+|++++ 
T Consensus       296 ~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~-  373 (488)
T PRK09088        296 VDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDA-  373 (488)
T ss_pred             CCcccccccCCccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcC-
Confidence            11   123557899999999999999 4578889999999999999999999999999998888899999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.+++.||.||+|+. +|++|+|.+||++|.++|.|.+++|++.+++    ...+++++.++        
T Consensus       374 ---------~g~l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~--------  435 (488)
T PRK09088        374 ---------DGFFWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADG--------  435 (488)
T ss_pred             ---------CCcEEEeccccceEEe-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCC--------
Confidence                     8999999999999997 8999999999999999999999999998764    34566666532        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.+++.++++++++.|+     .+++|.++++.|.+.+||+.
T Consensus       436 --------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gKi~  475 (488)
T PRK09088        436 --------APLDLERIRSHLSTRLAKYK-----VPKHLRLVDALPRTASGKLQ  475 (488)
T ss_pred             --------CCCCHHHHHHHHHhhCcCCC-----CCCEEEEcccCCCCCCCcee
Confidence                    23466889999999888776     66789999999999999974

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.5e-44  Score=418.12  Aligned_cols=345  Identities=19%  Similarity=0.189  Sum_probs=277.0

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcc---
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~---   98 (461)
                      ..++|+++++|||||||.||||+++|+++.+.+.++...+++.++|+++...|++|..++...+.++..|+++++.+   
T Consensus       412 ~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~  491 (1389)
T TIGR03443       412 VGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADD  491 (1389)
T ss_pred             CCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhh
Confidence            45789999999999999999999999999999888888899999999999999999998888888999999998853   


Q ss_pred             ---hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           99 ---VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        99 ---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                         +..+++.++++++|++.++|+++..+....                                               
T Consensus       492 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~-----------------------------------------------  524 (1389)
T TIGR03443       492 IGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA-----------------------------------------------  524 (1389)
T ss_pred             ccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc-----------------------------------------------
Confidence               567899999999999999999987765310                                               


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHH-HHHHHh-CCeeeeecccCCCccceec
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~-~~~~~~-~~~v~~~YG~tE~~~~~~~  253 (461)
                                                     ...+.++|.+++||++++.... .+.+.. +.+++|.||+||++..++.
T Consensus       525 -------------------------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~  573 (1389)
T TIGR03443       525 -------------------------------TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSY  573 (1389)
T ss_pred             -------------------------------cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEE
Confidence                                           0123345889999999988764 444433 7899999999999876554


Q ss_pred             cCCCC-----------CCccccccCCCCeEEEEEeCC-CCCcCCCCCceEEEEecCCccccccCCchhhccccC------
Q 012526          254 RRPTC-----------NVLGSVGHPINHTEIKIVDAE-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------  315 (461)
Q Consensus       254 ~~~~~-----------~~~~~~G~~~~~~~i~i~d~~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~------  315 (461)
                      .....           ....++|+|+++++++|+|++ .+++++.|+.|||+|+||+++.||+++|+.|.+.|.      
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~  653 (1389)
T TIGR03443       574 FEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVD  653 (1389)
T ss_pred             EEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccC
Confidence            32110           123568999999999999964 357899999999999999999999999999998873      


Q ss_pred             ----------------------CCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhc
Q 012526          316 ----------------------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR  373 (461)
Q Consensus       316 ----------------------~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~  373 (461)
                                            .++||+|||+|++++          ||.++|+||.||+||+ +|++|+|.|||++|.+
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~----------dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~  722 (1389)
T TIGR03443       654 PSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLP----------DGNVECCGRADDQVKI-RGFRIELGEIDTHLSQ  722 (1389)
T ss_pred             cccccccccccccccccccCCCccceeecCCceeEcC----------CCCEEEecccCCEEEe-CcEEecHHHHHHHHHh
Confidence                                  257999999999999          8999999999999997 9999999999999999


Q ss_pred             CccccEEEEEeCCC----CeeEEEEEcChH--HHHHHHHHcC--CCcC------CccccCcHHHHHHHHHHHHHHhccCC
Q 012526          374 SSLIRQIVVIGQDQ----RRPGAIIVPDKE--EVLMAAKRLS--IVHA------DASELSKEKTISLLYGELRKWTSKCS  439 (461)
Q Consensus       374 ~p~V~~a~V~~~~~----~~~~a~vv~~~~--~~~~~~~~~~--~~~~------~~~~~~~~~l~~~~~~~l~~~~~~~~  439 (461)
                      ||.|.+++|++.++    +.+.+++|+..+  ..........  ....      .......++++++++++|+.|+    
T Consensus       723 ~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~----  798 (1389)
T TIGR03443       723 HPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYA----  798 (1389)
T ss_pred             CcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCccc----
Confidence            99999999987543    467888887621  1000000000  0000      0001124678899999999998    


Q ss_pred             CccccEEEecCCCCCCCCccc
Q 012526          440 FQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       440 ~~~~~~~~~~~~~~~~~g~~~  460 (461)
                       +|..|.++++.|.+.|||+.
T Consensus       799 -~P~~~~~~~~lP~t~~GKid  818 (1389)
T TIGR03443       799 -IPTVIVPLKKLPLNPNGKVD  818 (1389)
T ss_pred             -CCceEEEcccCCCCCCcccc
Confidence             56789999999999999984

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=4.7e-44  Score=377.75  Aligned_cols=332  Identities=28%  Similarity=0.455  Sum_probs=281.2

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhh-hhhhccCeEEEE----
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMY----   96 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~-~~~l~~G~~~~~----   96 (461)
                      ..++++++++|||||||.||+|.+||+++..++......+++.++|+++...|++|++++... +.++..|+++++    
T Consensus       196 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~  275 (559)
T PRK08315        196 LDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEG  275 (559)
T ss_pred             CCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCC
Confidence            467889999999999999999999999999888888888899999999999999999998764 556888998884    


Q ss_pred             cchhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           97 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        97 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                      +++..+++.++++++|.++++|+++..+........                                            
T Consensus       276 ~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~--------------------------------------------  311 (559)
T PRK08315        276 FDPLATLAAVEEERCTALYGVPTMFIAELDHPDFAR--------------------------------------------  311 (559)
T ss_pred             CCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCC--------------------------------------------
Confidence            367889999999999999999999977654211110                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCC-eeeeecccCCCccceecc
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~-~v~~~YG~tE~~~~~~~~  254 (461)
                                                     ..+..+|.++.||++++..+ +.+.+.++. ++++.||+||++.+++..
T Consensus       312 -------------------------------~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~  360 (559)
T PRK08315        312 -------------------------------FDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQT  360 (559)
T ss_pred             -------------------------------CCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeec
Confidence                                           11223488899999998876 566666765 499999999998776654


Q ss_pred             CCCC---CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          255 RPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       255 ~~~~---~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      ....   ....++|+|++++.++++|++++++++.|+.|||+|+|++++.||+++|+.+...|..++||+|||++++++ 
T Consensus       361 ~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~-  439 (559)
T PRK08315        361 RTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDE-  439 (559)
T ss_pred             CcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcC-
Confidence            3322   345789999999999999988789999999999999999999999999999998887789999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.++++||.+|+++. +|++|++.+||++|.++|+|.+++|++.+++    .+.++|++.++        
T Consensus       440 ---------dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--------  501 (559)
T PRK08315        440 ---------EGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPG--------  501 (559)
T ss_pred             ---------CceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCC--------
Confidence                     8999999999999996 8999999999999999999999999998654    45577776532        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.++++++++++++.|+     .++++.++++.|...+||+.
T Consensus       502 --------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GK~~  541 (559)
T PRK08315        502 --------ATLTEEDVRDFCRGKIAHYK-----IPRYIRFVDEFPMTVTGKIQ  541 (559)
T ss_pred             --------CCCCHHHHHHHHHhhccccc-----CCcEEEEcccCCCCCCCcee
Confidence                    33567889999999998886     66789999999999999974

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-44  Score=385.23  Aligned_cols=343  Identities=21%  Similarity=0.242  Sum_probs=268.5

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHH-HHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-   97 (461)
                      ...++++++++|||||||.||||+++|++++... ..+...+++.++|++++..|+.|+.+... .+.++..|+++++. 
T Consensus       229 ~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~  308 (629)
T PRK10524        229 WLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYE  308 (629)
T ss_pred             eeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEEC
Confidence            3567899999999999999999999999875443 34455678899999999999999887644 56678899988774 


Q ss_pred             ------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526           98 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus        98 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                            ++..+++.++++++|++.++|+++..+.+.....      .                                 
T Consensus       309 g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------~---------------------------------  349 (629)
T PRK10524        309 GLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL------L---------------------------------  349 (629)
T ss_pred             CCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc------c---------------------------------
Confidence                  3678999999999999999999998775421100      0                                 


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-HHhCCeeeeecccCCCccc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPV  250 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-~~~~~~v~~~YG~tE~~~~  250 (461)
                                                        ....+..+|.+++||+++++.+.++. +.+++++++.||+||++..
T Consensus       350 ----------------------------------~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~  395 (629)
T PRK10524        350 ----------------------------------RKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWP  395 (629)
T ss_pred             ----------------------------------cccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccch
Confidence                                              00122345999999999998875554 5579999999999999853


Q ss_pred             eeccCC----CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecC---CccccccCCchhhccccC---CCCcc
Q 012526          251 IAARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALD---EDGWL  320 (461)
Q Consensus       251 ~~~~~~----~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~f~---~~~~~  320 (461)
                      +.....    ....++++|.|.++++++|+|++++++++.|+.|||+++||   +++.||+++++.+...+.   .++||
T Consensus       396 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (629)
T PRK10524        396 ILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVY  475 (629)
T ss_pred             hhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEE
Confidence            322221    12346789999999999999975889999999999999998   578899999877765431   46899


Q ss_pred             cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEc
Q 012526          321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  396 (461)
Q Consensus       321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~  396 (461)
                      +|||+|++++          +|.++|+||.||+|++ +|++|+|.|||++|.+||+|.+++|++.+++    .+.+++++
T Consensus       476 ~TGDl~~~d~----------dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~  544 (629)
T PRK10524        476 STFDWGIRDA----------DGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVP  544 (629)
T ss_pred             EcCCcEEEcC----------CCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEE
Confidence            9999999998          8999999999999997 7999999999999999999999999998764    56688887


Q ss_pred             ChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          397 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +++...        ..........++++++++++|+.|+     .+++|.++++.|.+.|||+.
T Consensus       545 ~~~~~~--------~~~~~~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~T~sGKi~  595 (629)
T PRK10524        545 KDSDSL--------ADREARLALEKEIMALVDSQLGAVA-----RPARVWFVSALPKTRSGKLL  595 (629)
T ss_pred             CCCCcc--------ccccchHHHHHHHHHHHHhhcCCCc-----CCCEEEEcCCCCCCCCcchH
Confidence            642100        0000001123567777777777765     67899999999999999973

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.6e-44  Score=375.14  Aligned_cols=330  Identities=22%  Similarity=0.305  Sum_probs=276.3

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---ch
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV   99 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---~~   99 (461)
                      .++++++++|||||||.||+|+++|+++..++..+...+++.+++++++++|++|.+++...+.++..|+++++.   ++
T Consensus       179 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~  258 (540)
T PRK06164        179 DPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDA  258 (540)
T ss_pred             CCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCH
Confidence            468899999999999999999999999999988888888999999999999999999998778889999999884   57


Q ss_pred             hhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHH
Q 012526          100 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  179 (461)
Q Consensus       100 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (461)
                      ..+++.++++++|+++++|+++..+.+....                                                 
T Consensus       259 ~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~-------------------------------------------------  289 (540)
T PRK06164        259 ARTARALRRHRVTHTFGNDEMLRRILDTAGE-------------------------------------------------  289 (540)
T ss_pred             HHHHHHHHHhCCeeecCCHHHHHHHHHhhcc-------------------------------------------------
Confidence            7899999999999999999999888764100                                                 


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecc-CCCchhHHHHHHHhCCeeeeecccCCCccceeccCCCC
Q 012526          180 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG-GSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC  258 (461)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg-~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  258 (461)
                                                 ...+.+++.+.+++ .+....+..+....++++++.||+||++..++......
T Consensus       290 ---------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  342 (540)
T PRK06164        290 ---------------------------RADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPATD  342 (540)
T ss_pred             ---------------------------cCCCcceeeeeeccCCcchHHHHHHHhhcCCceecceeeccccceeeccCCCC
Confidence                                       01222335554444 44555555555555889999999999987765544322


Q ss_pred             ---CCccccccCC-CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          259 ---NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       259 ---~~~~~~G~~~-~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                         ......|.+. +++.++++|++++.+++.|+.|||+|+|++++.||+++++.+...|..++||+|||+|++++    
T Consensus       343 ~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~----  418 (540)
T PRK06164        343 PVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG----  418 (540)
T ss_pred             CCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcC----
Confidence               2234567775 78999999998999999999999999999999999999999999998899999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC---CCeeEEEEEcChHHHHHHHHHcCCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRLSIV  411 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~---~~~~~a~vv~~~~~~~~~~~~~~~~  411 (461)
                            +|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.+   ...+.++++++++            
T Consensus       419 ------~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~------------  479 (540)
T PRK06164        419 ------DGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDG------------  479 (540)
T ss_pred             ------CceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCC------------
Confidence                  8999999999999997 89999999999999999999999999864   3467788887543            


Q ss_pred             cCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCC---ccc
Q 012526          412 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFL---CLA  460 (461)
Q Consensus       412 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~  460 (461)
                          ...+.++++++++++|+.++     .++.|.++++.|...+|   |+.
T Consensus       480 ----~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~g~~~Ki~  522 (540)
T PRK06164        480 ----ASPDEAGLMAACREALAGFK-----VPARVQVVEAFPVTESANGAKIQ  522 (540)
T ss_pred             ----CCCCHHHHHHHHHhhcccCc-----CCcEEEEecCCCCCCCCcccccc
Confidence                33577899999999999886     66789999999998887   763

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-44  Score=371.55  Aligned_cols=331  Identities=24%  Similarity=0.348  Sum_probs=278.4

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~--   97 (461)
                      ...++++++++|||||||.||+|++||+++...+......+++..+++++..+|++|.+++.. .+..+..|+++++.  
T Consensus       145 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~  224 (497)
T PRK06145        145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHRE  224 (497)
T ss_pred             CCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCc
Confidence            356789999999999999999999999999877666667778999999999999999998865 35568888888773  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++|.+.++|+++..++.......                                            
T Consensus       225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~--------------------------------------------  260 (497)
T PRK06145        225 FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDR--------------------------------------------  260 (497)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccc--------------------------------------------
Confidence             67889999999999999999999988865321100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccceecc
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                     ..+..+|.+++||+++++.+ +.+.+.+ +..+++.||+||++...+..
T Consensus       261 -------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  309 (497)
T PRK06145        261 -------------------------------FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLM  309 (497)
T ss_pred             -------------------------------cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceec
Confidence                                           11233588999999999876 5555666 67899999999998765543


Q ss_pred             CC--CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCC
Q 012526          255 RP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  332 (461)
Q Consensus       255 ~~--~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~  332 (461)
                      ..  .....+++|.|.++++++++|+ ++..++.|+.|||+++|++++.||+++++.+...| .++||+|||++++++  
T Consensus       310 ~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~--  385 (497)
T PRK06145        310 EAGREIEKIGSTGRALAHVEIRIADG-AGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDE--  385 (497)
T ss_pred             cCccccccCCCcccCCCCceEEEECC-CCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcC--
Confidence            32  2234578999999999999995 57888999999999999999999999999999888 489999999999998  


Q ss_pred             CCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHc
Q 012526          333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  408 (461)
Q Consensus       333 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~  408 (461)
                              +|.++++||.||+|+. +|++|+|.+||++|.++|+|.+++|++.+++    .+.+++++.+.         
T Consensus       386 --------~g~l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  447 (497)
T PRK06145        386 --------EGFLYLTDRKKDMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPG---------  447 (497)
T ss_pred             --------CCcEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCC---------
Confidence                    8999999999999997 8999999999999999999999999998654    46677777532         


Q ss_pred             CCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          409 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                             ...+.++++++++++|+.+.     .+++|.++++.|.+.+||+.
T Consensus       448 -------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~GKi~  487 (497)
T PRK06145        448 -------ATLTLEALDRHCRQRLASFK-----VPRQLKVRDELPRNPSGKVL  487 (497)
T ss_pred             -------CCCCHHHHHHHHHHhhhcCC-----CCCEEEEeccCCCCCccccc
Confidence                   33567899999999999886     66789999999999999974

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.6e-44  Score=414.13  Aligned_cols=333  Identities=20%  Similarity=0.242  Sum_probs=282.9

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc----
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~----   97 (461)
                      ..+++++|++|||||||.||||+++|+++.+.+.+....++++++|++++..|++|..++...+.++..|+++++.    
T Consensus       595 ~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~  674 (1296)
T PRK10252        595 SQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEA  674 (1296)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhc
Confidence            3678999999999999999999999999999999999999999999999999999999988888899999999984    


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.++++++|++.++|+++..+.+......                                           
T Consensus       675 ~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~-------------------------------------------  711 (1296)
T PRK10252        675 HRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG-------------------------------------------  711 (1296)
T ss_pred             cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc-------------------------------------------
Confidence              46779999999999999999999988765321110                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceecc
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                    ....+..+|.+++||+++++++ +.+.+.++.+++|.||+||++..++..
T Consensus       712 ------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~  761 (1296)
T PRK10252        712 ------------------------------ARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWY  761 (1296)
T ss_pred             ------------------------------ccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeee
Confidence                                          0012344589999999999887 555555689999999999998766544


Q ss_pred             CCC-------CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCC------Cccc
Q 012526          255 RPT-------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------GWLN  321 (461)
Q Consensus       255 ~~~-------~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~------~~~~  321 (461)
                      ...       .....++|+|++++.++|+| +.+++++.|+.|||+|+|++++.||+++|+.|.+.|..+      +||+
T Consensus       762 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~  840 (1296)
T PRK10252        762 PAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYR  840 (1296)
T ss_pred             ecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEe
Confidence            322       12245789999999999999 678899999999999999999999999999999988543      4999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeC---------C-CCeeE
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ---------D-QRRPG  391 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~---------~-~~~~~  391 (461)
                      |||+|++++          ||.++++||.||+||+ +|++|++.|||++|.+||+|.+++|+..         + ...+.
T Consensus       841 TGDl~~~~~----------~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lv  909 (1296)
T PRK10252        841 TGDVARWLD----------DGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLV  909 (1296)
T ss_pred             cCceEEEcC----------CCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEE
Confidence            999999998          8999999999999998 8999999999999999999999977643         1 13688


Q ss_pred             EEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          392 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       392 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +++++..+                ...+.++++++++++|+.|+     .+..+..+++.|.+.|||+.
T Consensus       910 a~v~~~~~----------------~~~~~~~l~~~l~~~Lp~~~-----~P~~~~~~~~lP~t~~GKid  957 (1296)
T PRK10252        910 GYLVSQSG----------------LPLDTSALQAQLRERLPPHM-----VPVVLLQLDQLPLSANGKLD  957 (1296)
T ss_pred             EEEEcCCC----------------CCCCHHHHHHHHHhhCchhc-----CCcEEEEecCCCCCCCcChh
Confidence            88887532                23567899999999999998     56789999999999999984

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.5e-44  Score=374.69  Aligned_cols=329  Identities=21%  Similarity=0.286  Sum_probs=274.5

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhh-hhhccCeEEEE-
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMY-   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~-~~l~~G~~~~~-   96 (461)
                      .....++++++++|||||||.||+|++||+++..++..+...+++.++|++++.+|++|.+++...+ .++..|+++++ 
T Consensus       146 ~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~  225 (529)
T PRK07867        146 FRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALR  225 (529)
T ss_pred             cccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEec
Confidence            3345778999999999999999999999999998888888888999999999999999999987644 46888998887 


Q ss_pred             --cchhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           97 --TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        97 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                        +++..+++.++++++|++.++|+.+..+....+...                                          
T Consensus       226 ~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~------------------------------------------  263 (529)
T PRK07867        226 RKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPD------------------------------------------  263 (529)
T ss_pred             CCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCccc------------------------------------------
Confidence              468899999999999999999998876654211000                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceecc
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                       .....++ +++||+.+++...++.+.+|.++++.||+||++..+...
T Consensus       264 ---------------------------------~~~~~lr-~~~gg~~~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~  309 (529)
T PRK07867        264 ---------------------------------DADNPLR-IVYGNEGAPGDIARFARRFGCVVVDGFGSTEGGVAITRT  309 (529)
T ss_pred             ---------------------------------ccccceE-EEecCCCChHHHHHHHHHhCCcEEEeecccccccccccC
Confidence                                             0011235 456888888888888888899999999999998655432


Q ss_pred             CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCC------------ceEEEE-ecCCccccccCCchhhccccCCCCccc
Q 012526          255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS------------KGIVKV-RGSQVMQGYFKNPSATKQALDEDGWLN  321 (461)
Q Consensus       255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~------------~Gel~v-~~~~~~~gy~~~~~~~~~~f~~~~~~~  321 (461)
                      .  ....+++|.+.++  +++++++++.+++.|+            .|||++ +|++++.||+++++.+...| .+|||+
T Consensus       310 ~--~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~  384 (529)
T PRK07867        310 P--DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYW  384 (529)
T ss_pred             C--CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEe
Confidence            2  2345678999998  7788877888899988            999999 99999999999999998888 589999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcC
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  397 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~  397 (461)
                      |||++++++          +|.+++.||.||+|++ +|++|+|.+||++|.+||+|.+++|++.+++    .+.++++..
T Consensus       385 TGD~~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~  453 (529)
T PRK07867        385 SGDLAYRDA----------DGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLA  453 (529)
T ss_pred             eccEEEEeC----------CCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEEC
Confidence            999999998          8999999999999997 8999999999999999999999999998764    556777765


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHH--HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++                ...+.++++++++.+  |+.++     .+++|.++++.|.+.+||+.
T Consensus       454 ~~----------------~~~~~~~l~~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKv~  497 (529)
T PRK07867        454 PG----------------AKFDPDAFAEFLAAQPDLGPKQ-----WPSYVRVCAELPRTATFKVL  497 (529)
T ss_pred             CC----------------CCCCHHHHHHHHHhhccCCccc-----CCeEEEEeeccCCCCCccee
Confidence            33                346778888888764  66665     77899999999999999974

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.6e-44  Score=445.43  Aligned_cols=332  Identities=20%  Similarity=0.252  Sum_probs=286.8

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      .....+++++|++|||||||.||||+++|+++.+.+.+....++++++|+++++.|++|..+....+.++..|+++++. 
T Consensus      3231 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~ 3310 (3956)
T PRK12467       3231 STRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRD 3310 (3956)
T ss_pred             cccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECC
Confidence            3446789999999999999999999999999999999999999999999999999999999988889999999999885 


Q ss_pred             ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                          ++..+++.|.++++|++.++|+++..+.+....                                           
T Consensus      3311 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~------------------------------------------- 3347 (3956)
T PRK12467       3311 NDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG------------------------------------------- 3347 (3956)
T ss_pred             cccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc-------------------------------------------
Confidence                467899999999999999999999877652110                                           


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccce
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI  251 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~  251 (461)
                                                        ..+.++|.+++||+++++++ +++.+.+ +..++|.||+||++..+
T Consensus      3348 ----------------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 3393 (3956)
T PRK12467       3348 ----------------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTV 3393 (3956)
T ss_pred             ----------------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeee
Confidence                                              12334599999999998876 5555655 67899999999998766


Q ss_pred             eccCCCC-----CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCC-------c
Q 012526          252 AARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG-------W  319 (461)
Q Consensus       252 ~~~~~~~-----~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~-------~  319 (461)
                      +......     ....++|+|++|++++|+| +.++++|.|+.|||+|+|+++++||+++|+.|++.|..++       |
T Consensus      3394 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~ 3472 (3956)
T PRK12467       3394 TLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRL 3472 (3956)
T ss_pred             EEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCcee
Confidence            5433211     2235799999999999999 5688999999999999999999999999999999996654       5


Q ss_pred             ccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC---CCeeEEEEEc
Q 012526          320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVP  396 (461)
Q Consensus       320 ~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~---~~~~~a~vv~  396 (461)
                      |+|||+|++++          ||.++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+   .+.+++++++
T Consensus      3473 yrTGDl~~~~~----------dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~ 3541 (3956)
T PRK12467       3473 YRTGDLARYRA----------DGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVP 3541 (3956)
T ss_pred             eccchhheecC----------CCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeC
Confidence            99999999999          8999999999999998 89999999999999999999999999874   4578899987


Q ss_pred             ChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          397 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ..+                .....++++++++++|+.|+     .|..|.++++.|.+.|||+.
T Consensus      3542 ~~~----------------~~~~~~~l~~~l~~~Lp~y~-----vP~~~~~l~~lP~t~~GKid 3584 (3956)
T PRK12467       3542 ADP----------------QGDWRETLRDHLAASLPDYM-----VPAQLLVLAAMPLGPNGKVD 3584 (3956)
T ss_pred             CCC----------------CcccHHHHHHHHhccCChhh-----CCCeeeeeccCCCCCCCccc
Confidence            642                23466889999999999998     55688999999999999985

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=4.4e-44  Score=388.29  Aligned_cols=326  Identities=23%  Similarity=0.355  Sum_probs=264.1

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEcc-
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTA-   98 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~-   98 (461)
                      ...++|+++++|||||||.||||++||+++.+.+......++++++|++++.+|++|.+++.. .+.++..|+++++.+ 
T Consensus       361 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~  440 (718)
T PRK08043        361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS  440 (718)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC
Confidence            346789999999999999999999999999988888778888999999999999999999865 456688999998743 


Q ss_pred             ---hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           99 ---VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        99 ---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                         +..+++.++++++|++.++|+++..+.....                                              
T Consensus       441 ~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~----------------------------------------------  474 (718)
T PRK08043        441 PLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAN----------------------------------------------  474 (718)
T ss_pred             cccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcC----------------------------------------------
Confidence               4577889999999999999998865533100                                              


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceecc
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                     ...+.++|.+++||+++++++ +.+.+.+|+++++.||+||++..++..
T Consensus       475 -------------------------------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~  523 (718)
T PRK08043        475 -------------------------------PYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSIN  523 (718)
T ss_pred             -------------------------------cccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEec
Confidence                                           012334599999999999887 455566899999999999998776655


Q ss_pred             CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccC--Cchh-------hccccCCCCcccCCce
Q 012526          255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK--NPSA-------TKQALDEDGWLNTGDI  325 (461)
Q Consensus       255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~--~~~~-------~~~~f~~~~~~~TGDl  325 (461)
                      .+.....+++|+|.++++++++|.++     .++.|||+++|++++.||++  +++.       +...+..+|||+|||+
T Consensus       524 ~~~~~~~~svG~p~pg~~~~i~d~~~-----~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDl  598 (718)
T PRK08043        524 VPMAAKPGTVGRILPGMDARLLSVPG-----IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDI  598 (718)
T ss_pred             CCcccCCCCCCCcCCCCeeEEecCCC-----CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCE
Confidence            44445678999999999999998542     24569999999999999998  3442       2222335799999999


Q ss_pred             EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeEEEEEc-ChHHHHHH
Q 012526          326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVP-DKEEVLMA  404 (461)
Q Consensus       326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~-~~~~~~~~  404 (461)
                      |++++          ||++++.||.||+|++ +|++|+|.|||+++.+|+.+.+++|++.+++..+..++. ..+     
T Consensus       599 g~~d~----------dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~-----  662 (718)
T PRK08043        599 VRFDE----------QGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTD-----  662 (718)
T ss_pred             EEEcC----------CCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcC-----
Confidence            99998          8999999999999997 799999999999999999888888888876543322111 101     


Q ss_pred             HHHcCCCcCCccccCcHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          405 AKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                 ...+.++++++++++ |+.|+     .|++|.++++.|.+.+||+.
T Consensus       663 -----------~~~~~~~l~~~~~~~~l~~~~-----vP~~i~~v~~lP~t~~GKi~  703 (718)
T PRK08043        663 -----------SELTREKLQQYAREHGVPELA-----VPRDIRYLKQLPLLGSGKPD  703 (718)
T ss_pred             -----------cccCHHHHHHHHHhcCCCccc-----CCceEEEecccCcCCCCCcC
Confidence                       235667899999887 88887     66789999999999999974

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=7.2e-44  Score=375.36  Aligned_cols=336  Identities=28%  Similarity=0.409  Sum_probs=272.0

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC--CCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY   96 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~   96 (461)
                      ....++++++++|||||||.||+|+++|+++..++.......+  ....++.+.++|++|.+++.. .+.++..|+++++
T Consensus       179 ~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~  258 (546)
T PLN02330        179 EEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVV  258 (546)
T ss_pred             ccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEE
Confidence            3456789999999999999999999999999876543221111  223468899999999998764 4556888888877


Q ss_pred             c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      .   ++..++..++++++|.+.++|+++..+...........                                      
T Consensus       259 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~--------------------------------------  300 (546)
T PLN02330        259 MSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDL--------------------------------------  300 (546)
T ss_pred             ecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcccccccc--------------------------------------
Confidence            4   57889999999999999999999988765311100000                                      


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccce
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI  251 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~  251 (461)
                                                        ..+ .+|.+++||+++++.+ +.+.+.+ ++++++.||+||++.+.
T Consensus       301 ----------------------------------~~~-~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  345 (546)
T PLN02330        301 ----------------------------------SKL-KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCIT  345 (546)
T ss_pred             ----------------------------------chh-eeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccce
Confidence                                              000 2378999999999887 4455666 89999999999997654


Q ss_pred             eccC-CC----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceE
Q 012526          252 AARR-PT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG  326 (461)
Q Consensus       252 ~~~~-~~----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg  326 (461)
                      .... +.    ....+++|.|+++++++++|++++++++.|+.|||+++|+.++.||+++++.+...|+.++||+|||+|
T Consensus       346 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~  425 (546)
T PLN02330        346 LTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIG  425 (546)
T ss_pred             ecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEE
Confidence            4321 11    123467999999999999998889999999999999999999999999999999888889999999999


Q ss_pred             eeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHH
Q 012526          327 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVL  402 (461)
Q Consensus       327 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~  402 (461)
                      ++++          ||.+++.||.+|+|+. +|++|+|.+||++|.++|.|.+++|++.++    +.+.++|++.++   
T Consensus       426 ~~~~----------dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~---  491 (546)
T PLN02330        426 YIDD----------DGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPK---  491 (546)
T ss_pred             EEeC----------CCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCC---
Confidence            9998          8999999999999997 799999999999999999999999999765    346677776532   


Q ss_pred             HHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          403 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                   ...+.++++++++++|+.++     .|+.|.++++.|.+.+||+.
T Consensus       492 -------------~~~~~~~l~~~~~~~l~~~~-----~p~~~~~v~~iP~t~~GK~~  531 (546)
T PLN02330        492 -------------AKESEEDILNFVAANVAHYK-----KVRVVQFVDSIPKSLSGKIM  531 (546)
T ss_pred             -------------CCCCHHHHHHHHHHhccccc-----CceEEEEeccCCCCCCccee
Confidence                         23456889999999998887     66779999999999999974

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-43  Score=375.99  Aligned_cols=332  Identities=30%  Similarity=0.471  Sum_probs=276.8

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC-C-CCCcEEEEECChhhhHHHhhh-hhhhccCeEEEEc
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-A-ENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~-~-~~~d~~~~~~p~~~~~~~~~~-~~~l~~G~~~~~~   97 (461)
                      ...++++++++|||||||.||+|++||+++..++......+. + ..++++++.+|++|.+++... +.++..|++++..
T Consensus       215 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~  294 (573)
T PRK05605        215 RPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLL  294 (573)
T ss_pred             CCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEe
Confidence            356789999999999999999999999999877665444332 2 347899999999999998664 4568888888774


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|++++.+.+......                                          
T Consensus       295 ~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------  332 (573)
T PRK05605        295 PAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG------------------------------------------  332 (573)
T ss_pred             CCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC------------------------------------------
Confidence               57889999999999999999999988876432211                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceec
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~  253 (461)
                                                       ..+.++|.+++||+++++.+ +.+.+.++..+++.||+||++.++..
T Consensus       333 ---------------------------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  379 (573)
T PRK05605        333 ---------------------------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVG  379 (573)
T ss_pred             ---------------------------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhc
Confidence                                             11223489999999998877 55555678999999999999877665


Q ss_pred             cCCC-CCCccccccCCCCeEEEEEeCCC-CCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          254 RRPT-CNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       254 ~~~~-~~~~~~~G~~~~~~~i~i~d~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      .... ...++++|.|++++.++|+|+++ +.+++.|+.|||+++|+.++.||+++++.+...|. +|||+|||+|++++ 
T Consensus       380 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~-  457 (573)
T PRK05605        380 NPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEE-  457 (573)
T ss_pred             CCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhccc-CCCcccCCEEEEcC-
Confidence            5432 23457899999999999999776 68899999999999999999999999999998884 67999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.+++.||.||+++. +|++|+|.+||+++..|+.|.+++|++.++    +.+.+++++.++        
T Consensus       458 ---------~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~--------  519 (573)
T PRK05605        458 ---------DGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPG--------  519 (573)
T ss_pred             ---------CCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCC--------
Confidence                     8999999999999996 899999999999999999999999998754    466777777543        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.++++++++++|+.++     .++.|.++++.|.+.+||+.
T Consensus       520 --------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~GKi~  559 (573)
T PRK05605        520 --------AALDPEGLRAYCREHLTRYK-----VPRRFYHVDELPRDQLGKVR  559 (573)
T ss_pred             --------CCCCHHHHHHHHHHhCcccc-----CCcEEEEeccCCCCCccccc
Confidence                    34567889999999998876     66789999999999999974

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.4e-44  Score=448.97  Aligned_cols=332  Identities=20%  Similarity=0.254  Sum_probs=289.3

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      .....+++++|++|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|..++...+.++..|+++++. 
T Consensus       649 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~  728 (5163)
T PRK12316        649 GTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAA  728 (5163)
T ss_pred             CCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECC
Confidence            3445788999999999999999999999999999999999999999999999999999999998888999999999885 


Q ss_pred             -----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           98 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        98 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                           ++..+++.++++++|++.++|+++..+.+...                                           
T Consensus       729 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------------------------  765 (5163)
T PRK12316        729 PGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED-------------------------------------------  765 (5163)
T ss_pred             ccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc-------------------------------------------
Confidence                 47789999999999999999999988864210                                           


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccc
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPV  250 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~  250 (461)
                                                        ...+..+|.+++||+++++++ +.+.+.+ +.+++|.||+||++..
T Consensus       766 ----------------------------------~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~  811 (5163)
T PRK12316        766 ----------------------------------VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAID  811 (5163)
T ss_pred             ----------------------------------cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheee
Confidence                                              012344589999999999887 5555555 7899999999999865


Q ss_pred             eeccC--CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC------CCcccC
Q 012526          251 IAARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNT  322 (461)
Q Consensus       251 ~~~~~--~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~------~~~~~T  322 (461)
                      ++...  .......++|+|++|++++|+|+ .++++|.|+.|||+|+|++++.||+++|+.|++.|..      ++||+|
T Consensus       812 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~T  890 (5163)
T PRK12316        812 VTHWTCVEEGGDSVPIGRPIANLACYILDA-NLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRT  890 (5163)
T ss_pred             eeEEecccccCCCCCCccccCCCEEEEECC-CCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEec
Confidence            44322  22334567999999999999994 5789999999999999999999999999999998843      459999


Q ss_pred             CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeEEEEEcChHHHH
Q 012526          323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVL  402 (461)
Q Consensus       323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~~~~~  402 (461)
                      ||+|++++          ||.++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+.+.++|+|++.++   
T Consensus       891 GDl~~~~~----------dG~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~~~~lva~vv~~~~---  956 (5163)
T PRK12316        891 GDLARYRA----------DGVIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESE---  956 (5163)
T ss_pred             CccEEECC----------CCCEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcCCCeEEEEEEccCC---
Confidence            99999999          8999999999999998 899999999999999999999999999998899999998643   


Q ss_pred             HHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          403 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                   .....++++++++++|+.|+     .|..|.++++.|.+.|||+.
T Consensus       957 -------------~~~~~~~l~~~l~~~Lp~y~-----vP~~i~~v~~lP~t~~GKid  996 (5163)
T PRK12316        957 -------------GGDWREALKAHLAASLPEYM-----VPAQWLALERLPLTPNGKLD  996 (5163)
T ss_pred             -------------CCCCHHHHHHHHHhhCCCcc-----CCCeEEEHhhCCCCCCCChh
Confidence                         24567899999999999998     66789999999999999984

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.8e-44  Score=373.17  Aligned_cols=332  Identities=23%  Similarity=0.350  Sum_probs=271.4

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh-hc-CCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~-~~-~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~   96 (461)
                      .....++++++++|||||||.||+|+++|+++...+..... .+ +..++|+++.++|++|++++...+ .+..|++.++
T Consensus       157 ~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~  235 (528)
T PRK07470        157 NAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVL  235 (528)
T ss_pred             cccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEE
Confidence            34457789999999999999999999999998765544222 22 567889999999999999986544 4556666554


Q ss_pred             c-----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526           97 T-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus        97 ~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                      .     +++.+++.++++++|++.++|+++..+.+.....                                        
T Consensus       236 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------------  275 (528)
T PRK07470        236 LPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVD----------------------------------------  275 (528)
T ss_pred             ecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcC----------------------------------------
Confidence            3     5788999999999999999999998876521110                                        


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV  250 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~  250 (461)
                                                         ...+.++|.+++||+++++.. +.+.+.++..+++.||+||++..
T Consensus       276 -----------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~  320 (528)
T PRK07470        276 -----------------------------------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGN  320 (528)
T ss_pred             -----------------------------------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCc
Confidence                                               012344589999999998765 56667789999999999999876


Q ss_pred             eeccCC--------CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccC
Q 012526          251 IAARRP--------TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT  322 (461)
Q Consensus       251 ~~~~~~--------~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~T  322 (461)
                      +.....        .....+++|.|.++++++++|+ ++++++.|+.|||+++|+.++.||+++++.+...| .++||+|
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~T  398 (528)
T PRK07470        321 ITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDD-EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRT  398 (528)
T ss_pred             eeecchhhccccccccceeeccCcccCCcEEEEECC-CCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEec
Confidence            554322        1234578899999999999994 57889999999999999999999999999998888 5899999


Q ss_pred             CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcCh
Q 012526          323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDK  398 (461)
Q Consensus       323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~  398 (461)
                      ||+|++++          +|.+++.||.||+|+. +|++|+|.+||+++.++|.|.+++|++.+++.    ..++++..+
T Consensus       399 GDl~~~~~----------~g~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~  467 (528)
T PRK07470        399 GDLGHLDA----------RGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARD  467 (528)
T ss_pred             ceeEEEcc----------CCeEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECC
Confidence            99999998          8999999999999996 89999999999999999999999999987653    456666643


Q ss_pred             HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          399 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +                ...+.++++++++++|+.|+     .+..+.++++.|.+.|||+.
T Consensus       468 ~----------------~~~~~~~~~~~l~~~l~~~~-----~P~~~~~~~~iP~t~~GKi~  508 (528)
T PRK07470        468 G----------------APVDEAELLAWLDGKVARYK-----LPKRFFFWDALPKSGYGKIT  508 (528)
T ss_pred             C----------------CCCCHHHHHHHHHHhhhcCC-----CCcEEEEeccCCCCCccccc
Confidence            2                23567899999999999887     66789999999999999974

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-43  Score=374.05  Aligned_cols=331  Identities=26%  Similarity=0.409  Sum_probs=278.9

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhh-hhhhccCeEEEEc---
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~-~~~l~~G~~~~~~---   97 (461)
                      ..++++++++|||||||.||+|.++|+++..++......+++.++|++++..|++|.++.... +.++..|++++++   
T Consensus       198 ~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~  277 (558)
T PRK12583        198 LDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEA  277 (558)
T ss_pred             cCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCC
Confidence            457889999999999999999999999999888888888899999999999999999998764 4458888888863   


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..++..++++++|++.++|+++..+........                                            
T Consensus       278 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--------------------------------------------  313 (558)
T PRK12583        278 FDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGN--------------------------------------------  313 (558)
T ss_pred             CCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccC--------------------------------------------
Confidence             57788999999999999999999876654211100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC-CeeeeecccCCCccceecc
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~-~~v~~~YG~tE~~~~~~~~  254 (461)
                                                     ..+..+|.+++||+++++.+ +.+.+.++ ..+++.||+||++.++...
T Consensus       314 -------------------------------~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~  362 (558)
T PRK12583        314 -------------------------------FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQT  362 (558)
T ss_pred             -------------------------------CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceecc
Confidence                                           11233489999999998876 55666675 5799999999999876654


Q ss_pred             CCC---CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          255 RPT---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       255 ~~~---~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      ...   .....++|+|.+++.++++|++ +.+++.|+.|||+++|+.++.||+++++.+...|+.++||+|||+|++++ 
T Consensus       363 ~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~-  440 (558)
T PRK12583        363 TAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDE-  440 (558)
T ss_pred             CcccccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECC-
Confidence            322   2345789999999999999976 88999999999999999999999999999988887789999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.+++.||.+|+|+. +|++|+|.+||++|.+||+|.+++|++.+++    .+.++++..++        
T Consensus       441 ---------dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--------  502 (558)
T PRK12583        441 ---------QGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPG--------  502 (558)
T ss_pred             ---------CccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCC--------
Confidence                     8999999999999996 8999999999999999999999999997553    46677776532        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.++++++++++|+.+.     .+++|.++++.|.+.+||+.
T Consensus       503 --------~~~~~~~i~~~~~~~L~~~~-----~P~~i~~v~~lP~t~sGK~~  542 (558)
T PRK12583        503 --------HAASEEELREFCKARIAHFK-----VPRYFRFVDEFPMTVTGKVQ  542 (558)
T ss_pred             --------CCCCHHHHHHHHHhhcccCc-----CCcEEEEeccCCCCCCCCcc
Confidence                    23567889999999999886     66789999999999999973

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.8e-44  Score=382.85  Aligned_cols=336  Identities=17%  Similarity=0.111  Sum_probs=263.6

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHH-HHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT   97 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~   97 (461)
                      ....+++++++|+|||||||.||||+++|++++. .+......+++.++|++++..++.|+... ..+.++..|+++++.
T Consensus       257 ~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~  335 (655)
T PRK03584        257 FEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLY  335 (655)
T ss_pred             ceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEe
Confidence            3455779999999999999999999999998754 45556667889999999999998887543 345678899998874


Q ss_pred             -------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           98 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        98 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                             ++..+++.++++++|++.++|+++..+.+.....                                       
T Consensus       336 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------------------  376 (655)
T PRK03584        336 DGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVP---------------------------------------  376 (655)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCc---------------------------------------
Confidence                   4678999999999999999999998775421000                                       


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHH-HHHHHh--CCeeeeecccCCC
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI--GVKVQVGYGLTES  247 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~-~~~~~~--~~~v~~~YG~tE~  247 (461)
                                                        .....+.++|.+++||+++++++. .+.+.+  ++.+++.||+||+
T Consensus       377 ----------------------------------~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~  422 (655)
T PRK03584        377 ----------------------------------GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDI  422 (655)
T ss_pred             ----------------------------------cccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhh
Confidence                                              000223445999999999998874 445556  4789999999998


Q ss_pred             ccceecc-CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecC--CccccccCCchhhc--cc-cC-CCCcc
Q 012526          248 SPVIAAR-RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATK--QA-LD-EDGWL  320 (461)
Q Consensus       248 ~~~~~~~-~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~--~~~~gy~~~~~~~~--~~-f~-~~~~~  320 (461)
                      +...... .......+++|.|.++++++|+|+ ++.++ .|+.|||+|++|  +++.||+++++.+.  .. |. .++||
T Consensus       423 ~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~-~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~  500 (655)
T PRK03584        423 CSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDE-DGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVW  500 (655)
T ss_pred             hcccccCCCCCCcCCCccCCCcCCceeEEECC-CCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEe
Confidence            6543322 222345678999999999999995 56677 799999999996  79999999987543  22 21 15789


Q ss_pred             cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEc
Q 012526          321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVP  396 (461)
Q Consensus       321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~  396 (461)
                      +|||+|++++          ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.++    +.+.++|++
T Consensus       501 ~TGDl~~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~  569 (655)
T PRK03584        501 RHGDWIEITE----------HGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVL  569 (655)
T ss_pred             ecCCeEEECC----------CCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEE
Confidence            9999999998          8999999999999997 899999999999999999999999999876    467788887


Q ss_pred             ChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCcc
Q 012526          397 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  459 (461)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~  459 (461)
                      .++.             .......++++++++++|+.|+     .+++|.++++.|.+.|||+
T Consensus       570 ~~~~-------------~~~~~~~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~t~sGKi  614 (655)
T PRK03584        570 AEGV-------------TLDDALRARIRTTIRTNLSPRH-----VPDKIIAVPDIPRTLSGKK  614 (655)
T ss_pred             CCCC-------------CCcHHHHHHHHHHHHhhCCCCc-----CCCEEEECCCCCCCCCccc
Confidence            6430             0011112567777777777776     6789999999999999997

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.2e-43  Score=364.53  Aligned_cols=312  Identities=21%  Similarity=0.260  Sum_probs=254.7

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcch--
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV--   99 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~--   99 (461)
                      ..++++++++|||||||.||+|++||+++...+......+++.+ ++.++++|++|.+|+...+.++..|+++++.+.  
T Consensus       117 ~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~  195 (452)
T PRK07445        117 PNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKR  195 (452)
T ss_pred             CCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHh
Confidence            45689999999999999999999999999888877777777755 467889999999999877888999999988642  


Q ss_pred             -hhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHH
Q 012526          100 -RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  178 (461)
Q Consensus       100 -~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (461)
                       ........+++++++.++|+++..+.+...                                                 
T Consensus       196 ~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~~-------------------------------------------------  226 (452)
T PRK07445        196 LKSGQELPPNPSDFFLSLVPTQLQRLLQLRP-------------------------------------------------  226 (452)
T ss_pred             ccchhhhhhhcCceEEEehHHHHHHHHhhCh-------------------------------------------------
Confidence             222334457889999999999988764100                                                 


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCCCC
Q 012526          179 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC  258 (461)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  258 (461)
                                                   ..+.++|.+++||+++++.+.+....+++++++.||+||++..+....+..
T Consensus       227 -----------------------------~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~  277 (452)
T PRK07445        227 -----------------------------QWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPDD  277 (452)
T ss_pred             -----------------------------hhhhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCchh
Confidence                                         112334899999999988875555557899999999999876544333222


Q ss_pred             --CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCc
Q 012526          259 --NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  336 (461)
Q Consensus       259 --~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~  336 (461)
                        ...+++|+|.++++++|+         .|+.|||+|+++.++.||++++.      ..++||+|||+|++++      
T Consensus       278 ~~~~~~~~G~~~p~~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~------  336 (452)
T PRK07445        278 FLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDA------  336 (452)
T ss_pred             hccCCCcCCccCCCCeEEEc---------CCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcC------
Confidence              235679999999999997         35689999999999999997542      2479999999999998      


Q ss_pred             ccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCc
Q 012526          337 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  412 (461)
Q Consensus       337 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  412 (461)
                          ||++++.||.||+|+. +|++|+|.+||++|.+||+|.+|+|++.+++    .+.++++..+              
T Consensus       337 ----dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~--------------  397 (452)
T PRK07445        337 ----QGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKD--------------  397 (452)
T ss_pred             ----CCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCC--------------
Confidence                8999999999999996 8999999999999999999999999998765    4667777643              


Q ss_pred             CCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          413 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       413 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                         ...+.++++++++++|+.|+     .+++|.++++.|.+.+||+.
T Consensus       398 ---~~~~~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  437 (452)
T PRK07445        398 ---PSISLEELKTAIKDQLSPFK-----QPKHWIPVPQLPRNPQGKIN  437 (452)
T ss_pred             ---CCCCHHHHHHHHHHhCCccc-----CCeEEEEecCCCCCCCcccC
Confidence               23456889999999999887     66789999999999999974

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=9.6e-44  Score=405.03  Aligned_cols=331  Identities=27%  Similarity=0.412  Sum_probs=277.6

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-   97 (461)
                      ....++|+++++|||||||.||+|.+||+++..++......+++.++|++++.+|++|.+++.. .+.++..|+++++. 
T Consensus       777 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~  856 (1146)
T PRK08633        777 PTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHP  856 (1146)
T ss_pred             CCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeC
Confidence            3456799999999999999999999999999998888888888999999999999999999876 56678889888773 


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|++++.+.+.....                                           
T Consensus       857 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------  893 (1146)
T PRK08633        857 DPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLH-------------------------------------------  893 (1146)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccC-------------------------------------------
Confidence               5678999999999999999999998776531110                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceec
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~  253 (461)
                                                      ...+.++|.+++||+++++++ +.+.+.++.++++.||+||++..++.
T Consensus       894 --------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~  941 (1146)
T PRK08633        894 --------------------------------PLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASV  941 (1146)
T ss_pred             --------------------------------cccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEE
Confidence                                            022344599999999999887 55566789999999999999877654


Q ss_pred             cCCC----------CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC---CCcc
Q 012526          254 RRPT----------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWL  320 (461)
Q Consensus       254 ~~~~----------~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~---~~~~  320 (461)
                      ..+.          ....+++|+|.|+++++++|+++++++++|+.|||+++|++++.||+++|+.+++.|.+   ++||
T Consensus       942 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~ 1021 (1146)
T PRK08633        942 NLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWY 1021 (1146)
T ss_pred             ecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeE
Confidence            4321          12457899999999999999988999999999999999999999999999999888842   3899


Q ss_pred             cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCc--cccEEEEEeCCCCe----eEEEE
Q 012526          321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS--LIRQIVVIGQDQRR----PGAII  394 (461)
Q Consensus       321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p--~V~~a~V~~~~~~~----~~a~v  394 (461)
                      +|||+|++++          ||.+++.||.||+|++ +|++|+|.|||++|.+||  .+.+++|++.+++.    +.+++
T Consensus      1022 ~TGD~~~~~~----------~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v 1090 (1146)
T PRK08633       1022 VTGDKGHLDE----------DGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLH 1090 (1146)
T ss_pred             ECCCEEEEcC----------CceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEE
Confidence            9999999998          8999999999999997 899999999999999999  56789999987653    44555


Q ss_pred             EcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          395 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       395 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +..                   ..+.+++++++.+ ++++|+     .++.+.++++.|.+.|||+.
T Consensus      1091 ~~~-------------------~~~~~~l~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKi~ 1133 (1146)
T PRK08633       1091 TCG-------------------AEDVEELKRAIKESGLPNLW-----KPSRYFKVEALPLLGSGKLD 1133 (1146)
T ss_pred             ecC-------------------ccCHHHHHHHHHhcCCCccc-----CCcEEEEecCcCCCCCCCCc
Confidence            542                   2345677777764 466665     66789999999999999975

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-43  Score=377.62  Aligned_cols=337  Identities=20%  Similarity=0.288  Sum_probs=260.7

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC-CCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      ...++|+++++|||||||.||||+++|+++.+++......++ +.+++++++++|++|.+++...+.++..|++++..  
T Consensus       189 ~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~  268 (612)
T PRK12476        189 ELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSP  268 (612)
T ss_pred             CCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECH
Confidence            356789999999999999999999999999887777666677 78899999999999999987666554445544432  


Q ss_pred             -----chhhHHHHHh--HhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           98 -----AVRNLKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        98 -----~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                           ++..+++.++  +++++.+..+|.++..+.........                                     
T Consensus       269 ~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------------------  311 (612)
T PRK12476        269 TAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAE-------------------------------------  311 (612)
T ss_pred             HHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhh-------------------------------------
Confidence                 4567888884  48999999999988777542100000                                     


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh---CC---eeeeecc
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---GV---KVQVGYG  243 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~---~~---~v~~~YG  243 (461)
                                                        .....+.+++ +++||+++++.+ +.+.+.+   |+   .+++.||
T Consensus       312 ----------------------------------~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG  356 (612)
T PRK12476        312 ----------------------------------GDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYG  356 (612)
T ss_pred             ----------------------------------hcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence                                              0001123348 899999998876 4555555   43   4899999


Q ss_pred             cCCCccceeccCCCC---------------------------CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec
Q 012526          244 LTESSPVIAARRPTC---------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG  296 (461)
Q Consensus       244 ~tE~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~  296 (461)
                      +||++..++...+..                           ...+++|+|.++++++|+|++++++++.|+.|||+++|
T Consensus       357 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g  436 (612)
T PRK12476        357 IAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHG  436 (612)
T ss_pred             hhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcC
Confidence            999876544322110                           12357899999999999997768999999999999999


Q ss_pred             CCccccccCCchhhccccCC------------------CCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCC
Q 012526          297 SQVMQGYFKNPSATKQALDE------------------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLST  358 (461)
Q Consensus       297 ~~~~~gy~~~~~~~~~~f~~------------------~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~  358 (461)
                      ++++.||+++|+.|.+.|..                  ++||+|||+|++ +          +|+++|+||.||+|++ +
T Consensus       437 ~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~----------dG~l~i~GR~~d~I~~-~  504 (612)
T PRK12476        437 DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-L----------DGELYITGRIADLIVI-D  504 (612)
T ss_pred             CcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-E----------CCEEEEEeccCcEEEE-C
Confidence            99999999999999888841                  359999999987 4          6999999999999998 8


Q ss_pred             ceeecchhHHHHHhc-CccccE--EEEEeCCC---CeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHH
Q 012526          359 GENVEPLELEEAALR-SSLIRQ--IVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR  432 (461)
Q Consensus       359 G~~v~~~eIE~~l~~-~p~V~~--a~V~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  432 (461)
                      |++|+|.|||++|.+ ||.|.+  ++|++.++   +.+.++++..+.               ....+.+++.+++++++.
T Consensus       505 G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~~l~~~~~~~l~  569 (612)
T PRK12476        505 GRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAG---------------TSRADPAPAIDAIRAAVS  569 (612)
T ss_pred             CcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCC---------------cccccHHHHHHHHHHHHH
Confidence            999999999999985 899999  67777764   356777776532               012466889999999988


Q ss_pred             H-HhccCCCccccEEEec--CCCCCCCCccc
Q 012526          433 K-WTSKCSFQIGPIHVVD--EPFTVNFLCLA  460 (461)
Q Consensus       433 ~-~~~~~~~~~~~~~~~~--~~~~~~~g~~~  460 (461)
                      . ++    ..++.+.+++  +.|.+.|||+.
T Consensus       570 ~~~~----~~p~~v~~v~~~~lP~t~~GKi~  596 (612)
T PRK12476        570 RRHG----LAVADVRLVPAGAIPRTTSGKLA  596 (612)
T ss_pred             HhhC----CcceEEEEECCCCcCcCCchHHH
Confidence            5 43    1357888987  59999999974

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.3e-43  Score=367.41  Aligned_cols=330  Identities=23%  Similarity=0.313  Sum_probs=278.1

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---c
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---~   98 (461)
                      ...+++++++|||||||.||+|.+||+++...+......+++..+|++++.+|++|++++...+.++..|+++++.   +
T Consensus       158 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~  237 (515)
T TIGR03098       158 VIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLL  237 (515)
T ss_pred             CCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCCCC
Confidence            4567899999999999999999999999998888877888899999999999999999998888889999999875   5


Q ss_pred             hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHH
Q 012526           99 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  178 (461)
Q Consensus        99 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (461)
                      +..+++.++++++|++.++|+++..+......                                                
T Consensus       238 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------------------  269 (515)
T TIGR03098       238 PRDVLKALEKHGITGLAAVPPLWAQLAQLDWP------------------------------------------------  269 (515)
T ss_pred             HHHHHHHHHHcCCceEecChHHHHHHHhcccC------------------------------------------------
Confidence            78899999999999999999999877542100                                                


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccceeccCC
Q 012526          179 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                  ...+..+|.+++||+++++.+ ..+.+.+ +..+++.||+||++........
T Consensus       270 ----------------------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~  321 (515)
T TIGR03098       270 ----------------------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPE  321 (515)
T ss_pred             ----------------------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccc
Confidence                                        012234589999999999887 4555556 7889999999999765544322


Q ss_pred             -CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC-----------CCcccCCc
Q 012526          257 -TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-----------DGWLNTGD  324 (461)
Q Consensus       257 -~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~-----------~~~~~TGD  324 (461)
                       ....++++|+|++++++++++ +++.+++.|+.|||+++|+.++.||+++++.+...|..           ++||+|||
T Consensus       322 ~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD  400 (515)
T TIGR03098       322 EVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGD  400 (515)
T ss_pred             cccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccc
Confidence             134567899999999999999 56788899999999999999999999999888776643           34899999


Q ss_pred             eEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHH
Q 012526          325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  400 (461)
Q Consensus       325 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~  400 (461)
                      +|++++          +|.+++.||.+|+|+. +|++|+|.+||+++.+||.|.+++|++.+++    .+.++++.... 
T Consensus       401 ~~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~-  468 (515)
T TIGR03098       401 TVRRDE----------EGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGG-  468 (515)
T ss_pred             eEEEcC----------CceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCC-
Confidence            999998          8999999999999997 8999999999999999999999999997654    46666665322 


Q ss_pred             HHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          401 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                     ...+.++++++++++|+.++     .+..|.++++.|.+.+||+.
T Consensus       469 ---------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~iP~t~~GK~~  508 (515)
T TIGR03098       469 ---------------EELDRAALLAECRARLPNYM-----VPALIHVRQALPRNANGKID  508 (515)
T ss_pred             ---------------CCCCHHHHHHHHHhhCcccc-----CCCEEEEeccCCCCCCCCCc
Confidence                           34567889999999998886     67789999999999999974

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.8e-43  Score=371.15  Aligned_cols=331  Identities=28%  Similarity=0.454  Sum_probs=270.2

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC---------CCC-CcEEEEECChhhhHHHhhh-hhhhc
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP---------AEN-GDKFLSMLPPWHVYERACG-YFIFS   89 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~---------~~~-~d~~~~~~p~~~~~~~~~~-~~~l~   89 (461)
                      ....+++++++|||||||.||+|+++|+++..++......+.         +.. .+++++.+|++|.+++... +..+.
T Consensus       203 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~  282 (562)
T PRK12492        203 PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMV  282 (562)
T ss_pred             CCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhh
Confidence            456689999999999999999999999999777665544332         223 3577899999999998654 34467


Q ss_pred             cCeEEEEc----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccccc
Q 012526           90 RGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL  165 (461)
Q Consensus        90 ~G~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (461)
                      .|...++.    ++..++..++++++|.+.++|+++..+.+......                                 
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------------  329 (562)
T PRK12492        283 SGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKD---------------------------------  329 (562)
T ss_pred             cCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccc---------------------------------
Confidence            77766543    46788999999999999999999987765311100                                 


Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeeccc
Q 012526          166 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGL  244 (461)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~  244 (461)
                                                                ..+.++|.+++||+++++.+ +.+.+.+++++++.||+
T Consensus       330 ------------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~  367 (562)
T PRK12492        330 ------------------------------------------LDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGL  367 (562)
T ss_pred             ------------------------------------------ccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCc
Confidence                                                      11234589999999999887 45556679999999999


Q ss_pred             CCCccceeccCCC-CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCC
Q 012526          245 TESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG  323 (461)
Q Consensus       245 tE~~~~~~~~~~~-~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TG  323 (461)
                      ||++.+++..... ....+++|+|+++++++|+|+ ++.++++|+.|||+++|+.++.||+++++.+.+.|..++||+||
T Consensus       368 tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  446 (562)
T PRK12492        368 TETSPVASTNPYGELARLGTVGIPVPGTALKVIDD-DGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG  446 (562)
T ss_pred             cccCceeeecCCcccccCCccceecCCCEEEEECC-CCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecC
Confidence            9998776654432 234578999999999999995 57889999999999999999999999999999999778999999


Q ss_pred             ceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChH
Q 012526          324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  399 (461)
Q Consensus       324 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~  399 (461)
                      |+|++++          +|.+++.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.+++++.. 
T Consensus       447 D~g~~~~----------~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-  514 (562)
T PRK12492        447 DIAVIDP----------DGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARD-  514 (562)
T ss_pred             cEEEECC----------CCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC-
Confidence            9999998          8999999999999997 7999999999999999999999999998654    4556666542 


Q ss_pred             HHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          400 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                      ...+.++++++++++|+.|.     .+.+|.++++.|.+.+||+.
T Consensus       515 ----------------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~GK~~  554 (562)
T PRK12492        515 ----------------PGLSVEELKAYCKENFTGYK-----VPKHIVLRDSLPMTPVGKIL  554 (562)
T ss_pred             ----------------CCCCHHHHHHHHHHhccccc-----CCcEEEEeccCCCCCCCcee
Confidence                            23456889999999998886     67789999999999999973

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.2e-43  Score=380.64  Aligned_cols=333  Identities=18%  Similarity=0.146  Sum_probs=258.2

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHH-HHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      ...+++|+++|+|||||||.||||+++|++++. .+......+++.++|++++..|+.|+... ..+.++..|+++++. 
T Consensus       259 ~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~l~~G~t~vl~~  337 (652)
T TIGR01217       259 EQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN-WLVSGLATGATLVLYD  337 (652)
T ss_pred             eecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhhH-HHHHHHhcCcEEEEEC
Confidence            445678999999999999999999999998654 44455566789999999999999987543 344678999999874 


Q ss_pred             ------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526           98 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus        98 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                            ++..+++.++++++|++...|.++..+......    .                                    
T Consensus       338 g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~----~------------------------------------  377 (652)
T TIGR01217       338 GSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVH----P------------------------------------  377 (652)
T ss_pred             CCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCC----c------------------------------------
Confidence                  356899999999999987777766544321000    0                                    


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HHHHhC--CeeeeecccCCCc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIG--VKVQVGYGLTESS  248 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~~~~~--~~v~~~YG~tE~~  248 (461)
                                                       .....+.++|.+++||+++++++.+ +.+.++  ..+.+.||+||++
T Consensus       378 ---------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~  424 (652)
T TIGR01217       378 ---------------------------------ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDIC  424 (652)
T ss_pred             ---------------------------------cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHh
Confidence                                             0002334569999999999998744 445564  4577889999975


Q ss_pred             cceec-cCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecC--CccccccCCchhhc---cccC-CCCccc
Q 012526          249 PVIAA-RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATK---QALD-EDGWLN  321 (461)
Q Consensus       249 ~~~~~-~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~--~~~~gy~~~~~~~~---~~f~-~~~~~~  321 (461)
                      ..... .+......+++|.|.++++++++|+ +++++ +|+.|||++++|  +++.|||++++.+.   ..|. .+|||+
T Consensus       425 ~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~-~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~  502 (652)
T TIGR01217       425 SCFAGANPTLPVHIGEIQAPGLGTAVQSWDP-EGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWR  502 (652)
T ss_pred             ccccCCCCCCCCcCCccCCCcCCCceEEECC-CCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEE
Confidence            43322 2222334578899999999999995 46666 599999999996  68999999998654   2232 268999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcC
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  397 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~  397 (461)
                      |||+|++++          ||+++|+||.||+|+. +|++|+|.|||++|.+||+|.+|+|++.+++    .+.++|++.
T Consensus       503 tGDlg~~d~----------dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~  571 (652)
T TIGR01217       503 HGDWITLTP----------RGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLA  571 (652)
T ss_pred             cCCcEEECC----------CCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEEC
Confidence            999999999          8999999999999996 8999999999999999999999999998754    567888876


Q ss_pred             hHHHHHHHHHcCCCcCCccccC---cHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +.                ...+   .++++++++++|+.|+     .+++|.++++.|.+.|||+.
T Consensus       572 ~~----------------~~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~T~sGKi~  616 (652)
T TIGR01217       572 PG----------------ATLDDALLDRIKRTIRAGLSPRH-----VPDEIIEVPGIPHTLTGKRV  616 (652)
T ss_pred             CC----------------CCCCHHHHHHHHHHHHhhCCCCc-----CCCEEEECCCCCCCCCccCh
Confidence            42                1122   2577888888888876     67789999999999999973

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-43  Score=367.62  Aligned_cols=332  Identities=25%  Similarity=0.385  Sum_probs=281.0

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhh-hhccCeEEEEc-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~-~l~~G~~~~~~-   97 (461)
                      .....+++++++|||||||.||+|.+||+++...+......+++.++|++++.+|++|.+++...+. ++..|+++++. 
T Consensus       166 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~  245 (523)
T PRK08316        166 VELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD  245 (523)
T ss_pred             cCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEec
Confidence            3456789999999999999999999999999988888777888999999999999999999866444 47889998885 


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.++++++|++.++|.++..+++.....                                            
T Consensus       246 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------  281 (523)
T PRK08316        246 APDPELILRTIEAERITSFFAPPTVWISLLRHPDFD--------------------------------------------  281 (523)
T ss_pred             CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccc--------------------------------------------
Confidence              6888999999999999999999998776531110                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccceec
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~~  253 (461)
                                                     ...+..++.+++||+.++..+ ..+.+.+ +..+++.||+||++.++..
T Consensus       282 -------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  330 (523)
T PRK08316        282 -------------------------------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATV  330 (523)
T ss_pred             -------------------------------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccc
Confidence                                           012334588999999999887 5555556 7899999999999887665


Q ss_pred             cCCC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          254 RRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       254 ~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      ..+.  ....+++|+|.++++++|+| +++.+++.|+.|||+++|++++.||+++++.++..| .++||+|||+|++++ 
T Consensus       331 ~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~-  407 (523)
T PRK08316        331 LGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDE-  407 (523)
T ss_pred             cCccccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcC-
Confidence            4332  23457899999999999999 457889999999999999999999999999999888 589999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.+++.||.||+|+. +|++|+|.+||+.+.++++|.+++|++.+++.    +.+++++.++        
T Consensus       408 ---------~g~l~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--------  469 (523)
T PRK08316        408 ---------EGYITVVDRKKDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAG--------  469 (523)
T ss_pred             ---------CceEEEecccccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCC--------
Confidence                     8999999999999997 89999999999999999999999999986654    6677777532        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              .....+++.++++++|+.++     .+.++.++++.|.+.+||+.
T Consensus       470 --------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~p~t~~gKi~  509 (523)
T PRK08316        470 --------ATVTEDELIAHCRARLAGFK-----VPKRVIFVDELPRNPSGKIL  509 (523)
T ss_pred             --------CCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCCcccee
Confidence                    23566888999998888776     77889999999999999973

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.6e-43  Score=368.30  Aligned_cols=331  Identities=26%  Similarity=0.336  Sum_probs=278.0

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCC-CCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      ....+++++++|||||||.||+|.++|+++...+......+++ ..++++++..|++|.+++...+.++..|+++++.  
T Consensus       170 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~  249 (542)
T PRK07786        170 DIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPL  249 (542)
T ss_pred             CCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccC
Confidence            4556789999999999999999999999998888777777777 5788999999999999987778889999999874  


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|.+.++|+++..++.......                                          
T Consensus       250 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~------------------------------------------  287 (542)
T PRK07786        250 GAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP------------------------------------------  287 (542)
T ss_pred             CCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc------------------------------------------
Confidence               57889999999999999999999988876321100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCcccee
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~  252 (461)
                                                       ..+ .++.+++||+++++++ +.+.+.+ +..+++.||+||++.+.+
T Consensus       288 ---------------------------------~~~-~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~  333 (542)
T PRK07786        288 ---------------------------------RDL-ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTC  333 (542)
T ss_pred             ---------------------------------cCc-ceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceE
Confidence                                             000 2488999999998876 5555666 789999999999987665


Q ss_pred             ccCCC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeecc
Q 012526          253 ARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  330 (461)
Q Consensus       253 ~~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~  330 (461)
                      .....  ....+++|+|++++.++++| +++..++.|+.|||+++|+.++.||+++++.+...| .++||+|||++++++
T Consensus       334 ~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~  411 (542)
T PRK07786        334 MLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDE  411 (542)
T ss_pred             ecCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcC
Confidence            43322  13457899999999999999 557888999999999999999999999999999888 589999999999998


Q ss_pred             CCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHH
Q 012526          331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  406 (461)
Q Consensus       331 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~  406 (461)
                                +|.++++||.+|+|+. +|++|++.+||++|.+||.|.+++|++.+++    ...++++...+       
T Consensus       412 ----------~g~~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------  473 (542)
T PRK07786        412 ----------EGYVWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRND-------  473 (542)
T ss_pred             ----------CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCC-------
Confidence                      8999999999999997 8999999999999999999999999997643    45666665432       


Q ss_pred             HcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          407 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       407 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ......++++++++++++.|+     .+++|.++++.|...+||+.
T Consensus       474 --------~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~iP~t~~GKv~  514 (542)
T PRK07786        474 --------DAALTLEDLAEFLTDRLARYK-----HPKALEIVDALPRNPAGKVL  514 (542)
T ss_pred             --------CCCCCHHHHHHHHHhhccCCC-----CCCEEEEeccCCCCCccccc
Confidence                    122456889999999888886     67789999999999999974

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=4.6e-43  Score=366.77  Aligned_cols=331  Identities=27%  Similarity=0.395  Sum_probs=270.2

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~--   97 (461)
                      ...++++++++|||||||.||+|.++|+++............+.+++++++++|++|..+... .+.++..|+++++.  
T Consensus       169 ~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  248 (517)
T PRK08008        169 PLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEK  248 (517)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccc
Confidence            345689999999999999999999999999865443333445788999999999999877654 45568899999885  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++|++.++|+++..+........                                            
T Consensus       249 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------------------  284 (517)
T PRK08008        249 YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN--------------------------------------------  284 (517)
T ss_pred             cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc--------------------------------------------
Confidence             57889999999999999999999877754211000                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchh-HHHHHHHhCCeeeeecccCCCccceeccC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARR  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~-~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  255 (461)
                                                     .....++.+..++ ++++. ..++.+.+++++++.||+||++..+....
T Consensus       285 -------------------------------~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  332 (517)
T PRK08008        285 -------------------------------DRQHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDR  332 (517)
T ss_pred             -------------------------------cccccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCC
Confidence                                           0011125555554 55554 46677778999999999999987555433


Q ss_pred             C-CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec---CCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          256 P-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG---SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       256 ~-~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~---~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      + .....+++|.|.++++++++| +.+.+++.|+.|||+++|   +.++.||+++++.+++.|..+|||+|||+|++++ 
T Consensus       333 ~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~-  410 (517)
T PRK08008        333 PGDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE-  410 (517)
T ss_pred             ccccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECC-
Confidence            2 223456899999999999999 567899999999999998   5899999999999999998899999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.+++.||.+|+|+. +|++|+|.+||+++.+||.|.+++|++.++    +.+.++++++.+        
T Consensus       411 ---------~g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~--------  472 (517)
T PRK08008        411 ---------EGFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG--------  472 (517)
T ss_pred             ---------CCcEEEeecccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCC--------
Confidence                     8999999999999997 899999999999999999999999999864    356788887643        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.++++++++++++.|+     .+..+.++++.|.+.+||+.
T Consensus       473 --------~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~gK~~  512 (517)
T PRK08008        473 --------ETLSEEEFFAFCEQNMAKFK-----VPSYLEIRKDLPRNCSGKII  512 (517)
T ss_pred             --------CCCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCCcccee
Confidence                    34567899999999999886     66789999999999999974

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=5.7e-43  Score=368.64  Aligned_cols=333  Identities=28%  Similarity=0.392  Sum_probs=277.2

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhh-hhhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~-~~~l~~G~~~~~~--   97 (461)
                      ..+++|+++++|||||||.||+|+++|+++......+...+++.++|++++.+|++|.+++... +.++..|+++++.  
T Consensus       183 ~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~  262 (547)
T PRK06087        183 TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDI  262 (547)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCC
Confidence            3567899999999999999999999999998888887788889999999999999999998654 4558889888885  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++++++++|+.+..++......                                             
T Consensus       263 ~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------------------------------  297 (547)
T PRK06087        263 FTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ---------------------------------------------  297 (547)
T ss_pred             CCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------------------------------
Confidence             5788999999999999999888776665432110                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                    ...+..+|.+++||+++++.+.+....+++++++.||+||++.+......
T Consensus       298 ------------------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~  347 (547)
T PRK06087        298 ------------------------------PADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLD  347 (547)
T ss_pred             ------------------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEecccccCCccccCCC
Confidence                                          01233459999999999998866666679999999999999877665433


Q ss_pred             CC--CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          257 TC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       257 ~~--~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                      ..  ...+++|.|.+++.++++| +.+.+++.|+.|||+++|+.++.||+++++.+...|..++||+|||++++++    
T Consensus       348 ~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----  422 (547)
T PRK06087        348 DPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDE----  422 (547)
T ss_pred             cchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECC----
Confidence            22  2345789999999999999 5678889999999999999999999999999999887789999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  410 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~  410 (461)
                            +|.++++||.+|+|+. +|++|+|.+||++|.++|+|.+++|++.+++    .+.+++++..+           
T Consensus       423 ------~g~l~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------  484 (547)
T PRK06087        423 ------AGYIKITGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAP-----------  484 (547)
T ss_pred             ------CCCEEEEecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCC-----------
Confidence                  8999999999999996 8999999999999999999999999998654    46677776531           


Q ss_pred             CcCCccccCcHHHHHHHH-HHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          411 VHADASELSKEKTISLLY-GELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       411 ~~~~~~~~~~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                          ....+.+++.+++. +.++.++     .+.+|.++++.|...+||+.
T Consensus       485 ----~~~~~~~~~~~~~~~~~l~~~~-----~P~~i~~v~~iP~t~sGK~~  526 (547)
T PRK06087        485 ----HHSLTLEEVVAFFSRKRVAKYK-----YPEHIVVIDKLPRTASGKIQ  526 (547)
T ss_pred             ----CCCCCHHHHHHHHHhccccccC-----CCeEEEEeccCCCCCCCcCc
Confidence                12345567777765 3566665     77899999999999999974

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.4e-43  Score=365.40  Aligned_cols=333  Identities=32%  Similarity=0.556  Sum_probs=284.7

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      .....++++++++|||||||.||+|.++|+++..........+++.++|++++.+|++|.+++...+.++..|++++++ 
T Consensus       161 ~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~  240 (521)
T PRK06187        161 FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPR  240 (521)
T ss_pred             CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecC
Confidence            4456778999999999999999999999999998888888888999999999999999999998877799999999885 


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.++++++|+++++|+++..+.+......                                           
T Consensus       241 ~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~-------------------------------------------  277 (521)
T PRK06187        241 RFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYF-------------------------------------------  277 (521)
T ss_pred             CCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCc-------------------------------------------
Confidence              57889999999999999999999998876432210                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceecc
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                      ..+..+|.+++||++++..+ +.+.+.+++++++.||+||++.++...
T Consensus       278 --------------------------------~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  325 (521)
T PRK06187        278 --------------------------------VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVL  325 (521)
T ss_pred             --------------------------------cCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccC
Confidence                                            12234588999999999887 445555699999999999998776655


Q ss_pred             CCCCC------CccccccCCCCeEEEEEeCCCCCcCCC--CCceEEEEecCCccccccCCchhhccccCCCCcccCCceE
Q 012526          255 RPTCN------VLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG  326 (461)
Q Consensus       255 ~~~~~------~~~~~G~~~~~~~i~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg  326 (461)
                      .....      ..+++|.|.+++.++|+|++ +.+++.  |+.|||+++++.++.||+++++.+...| .++||+|||++
T Consensus       326 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~  403 (521)
T PRK06187        326 PPEDQLPGQWTKRRSAGRPLPGVEARIVDDD-GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVG  403 (521)
T ss_pred             CcccccccccccCCccccccCCeEEEEECCC-CCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceE
Confidence            43332      56789999999999999954 678888  9999999999999999999999998888 47799999999


Q ss_pred             eeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHH
Q 012526          327 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVL  402 (461)
Q Consensus       327 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~  402 (461)
                      ++++          +|.+++.||.+|++++ +|.++++.+||+++.++++|.+++|++.++    +.+.+++++.+.   
T Consensus       404 ~~~~----------~g~~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---  469 (521)
T PRK06187        404 YIDE----------DGYLYITDRIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPG---  469 (521)
T ss_pred             EEcC----------CCCEEEeecccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCC---
Confidence            9998          8999999999999997 899999999999999999999999998754    356677776532   


Q ss_pred             HHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          403 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                   ...+.++++++++++|+.+.     .+.++.++++.|.+.+||+.
T Consensus       470 -------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~~P~t~~gK~~  509 (521)
T PRK06187        470 -------------ATLDAKELRAFLRGRLAKFK-----LPKRIAFVDELPRTSVGKIL  509 (521)
T ss_pred             -------------CCCCHHHHHHHHHHhccCCC-----CceEEEEccCCCCCCCCCee
Confidence                         33567889999988888876     66789999999999999974

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.4e-43  Score=366.89  Aligned_cols=328  Identities=24%  Similarity=0.286  Sum_probs=279.0

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---ch
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV   99 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---~~   99 (461)
                      .++++++++|||||||.||+|.++|+++...+......+++..+|++++.+|++|..++. .+.++..|+++++.   ++
T Consensus       166 ~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~  244 (524)
T PRK06188        166 LPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDP  244 (524)
T ss_pred             CCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCH
Confidence            346799999999999999999999999999888888888999999999999999998874 45668889999885   57


Q ss_pred             hhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHH
Q 012526          100 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  179 (461)
Q Consensus       100 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (461)
                      ..+++.+++++++++.++|+++..+++......                                               
T Consensus       245 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-----------------------------------------------  277 (524)
T PRK06188        245 AEVLRAIEEQRITATFLVPTMIYALLDHPDLRT-----------------------------------------------  277 (524)
T ss_pred             HHHHHHHHHhCCEEEEehHHHHHHHHhCcCccC-----------------------------------------------
Confidence            889999999999999999999988866321110                                               


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceeccCCC-
Q 012526          180 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-  257 (461)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-  257 (461)
                                                  ..+.++|.+++||+++++.. ..+.+.++..+++.||+||++..++..... 
T Consensus       278 ----------------------------~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  329 (524)
T PRK06188        278 ----------------------------RDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRD  329 (524)
T ss_pred             ----------------------------CCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchh
Confidence                                        12334589999999998874 677777888899999999997655543321 


Q ss_pred             -----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCC
Q 012526          258 -----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  332 (461)
Q Consensus       258 -----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~  332 (461)
                           .....++|+|.++++++++|++ +.+++.|+.|||+++++.++.||++++..+...| .+|||+|||++++++  
T Consensus       330 ~~~~~~~~~~~~G~p~~g~~v~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~--  405 (524)
T PRK06188        330 HDPDDPKRLTSCGRPTPGLRVALLDED-GREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDE--  405 (524)
T ss_pred             ccccccccCCccccccCCcEEEEEcCC-CCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcC--
Confidence                 2345689999999999999954 8889999999999999999999999999998888 589999999999998  


Q ss_pred             CCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHc
Q 012526          333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  408 (461)
Q Consensus       333 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~  408 (461)
                              +|.+++.||.+|++++ +|++|+|.+||++|.+|++|.+++|++.+++    .+.+++++.++         
T Consensus       406 --------~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  467 (524)
T PRK06188        406 --------DGFYYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPG---------  467 (524)
T ss_pred             --------CccEEEEeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCC---------
Confidence                    8999999999999997 8999999999999999999999999998654    56677777542         


Q ss_pred             CCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          409 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                             ...+.++++++++++++.++     .+.+|.++++.|.+.+||+.
T Consensus       468 -------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~P~t~~gKi~  507 (524)
T PRK06188        468 -------AAVDAAELQAHVKERKGSVH-----APKQVDFVDSLPLTALGKPD  507 (524)
T ss_pred             -------CCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCcccccc
Confidence                   33467889999999888886     66789999999999999974

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.7e-43  Score=366.21  Aligned_cols=329  Identities=26%  Similarity=0.416  Sum_probs=268.2

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHH--HHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI--RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~--~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~   97 (461)
                      ....++++++++|||||||.||+|++||++++.+.  ..+...+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus       171 ~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~  250 (539)
T PRK07008        171 PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLP  250 (539)
T ss_pred             ccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEe
Confidence            34567889999999999999999999999986533  2333467788999999999999998877767778899999875


Q ss_pred             ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                          ++..+++.++++++|.+.++|+++..+.+......                                         
T Consensus       251 ~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-----------------------------------------  289 (539)
T PRK07008        251 GPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG-----------------------------------------  289 (539)
T ss_pred             cCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-----------------------------------------
Confidence                56889999999999999999999988876322110                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                        ..+.+++.+++||+++++.+ +.+.+.+++.+++.||+||++..+.
T Consensus       290 ----------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~  335 (539)
T PRK07008        290 ----------------------------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGT  335 (539)
T ss_pred             ----------------------------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccce
Confidence                                              12334588999999998886 5556778999999999999987654


Q ss_pred             ccCCCC-----------CCccccccCCCCeEEEEEeCCCCCcCCCC--CceEEEEecCCccccccCCchhhccccCCCCc
Q 012526          253 ARRPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGW  319 (461)
Q Consensus       253 ~~~~~~-----------~~~~~~G~~~~~~~i~i~d~~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~  319 (461)
                      ......           ....++|+|+++++++++|+ ++.+++.+  +.|||+++|++++.||++++.   ..+ .+||
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~  410 (539)
T PRK07008        336 LCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGD-DGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPL-VDGW  410 (539)
T ss_pred             ecccccccccCCchhhhhhcccCCccccceEEEEECC-CCCccCCCCCcceEEEEeCCccchhhcCChh---hhh-cCCC
Confidence            332110           11357899999999999995 56666643  579999999999999999873   334 3789


Q ss_pred             ccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEE
Q 012526          320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIV  395 (461)
Q Consensus       320 ~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv  395 (461)
                      |+|||++++++          ||.+++.||.+|+|+. +|++|+|.+||+++..||.|.+++|++.+++    .+.++|+
T Consensus       411 ~~TGD~~~~~~----------dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~  479 (539)
T PRK07008        411 FPTGDVATIDA----------DGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVV  479 (539)
T ss_pred             cccCceEEEcC----------CCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEE
Confidence            99999999998          8999999999999996 8999999999999999999999999998753    4566666


Q ss_pred             cChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          396 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ..++                ...+.++++++++++|+.|+     .++.|.++++.|.+.+||+.
T Consensus       480 ~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sgKi~  523 (539)
T PRK07008        480 KRPG----------------AEVTREELLAFYEGKVAKWW-----IPDDVVFVDAIPHTATGKLQ  523 (539)
T ss_pred             eCCC----------------CccCHHHHHHHHHhhccccc-----CCeEEEEecCCCCCCcccee
Confidence            5432                33567899999999998886     67899999999999999974

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=6.8e-43  Score=370.26  Aligned_cols=339  Identities=24%  Similarity=0.351  Sum_probs=262.1

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---c
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---~   98 (461)
                      ..++++++++|||||||.||+|+++|+++............+...+++++.+|++|..++...+.++..|+++++.   +
T Consensus       183 ~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~  262 (579)
T PLN03102        183 QDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVT  262 (579)
T ss_pred             CCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCC
Confidence            4568999999999999999999999999755444444445667788999999999999987767777788887764   5


Q ss_pred             hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHH
Q 012526           99 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  178 (461)
Q Consensus        99 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (461)
                      +..+++.|+++++|++.++|+++..+.+......                                              
T Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------------  296 (579)
T PLN03102        263 APEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL----------------------------------------------  296 (579)
T ss_pred             hHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc----------------------------------------------
Confidence            7789999999999999999999988876321100                                              


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCC--
Q 012526          179 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--  256 (461)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--  256 (461)
                                                   .....++.+++||+++++.+.++.+.++.++++.||+||++..+.....  
T Consensus       297 -----------------------------~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~  347 (579)
T PLN03102        297 -----------------------------SPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQD  347 (579)
T ss_pred             -----------------------------CCcccceEEEECCCCCCHHHHHHHHHcCCeEEeecCccccCcccccccccc
Confidence                                         0111236789999999998877777789999999999998764432110  


Q ss_pred             ------CC------CCccccccCCCCeEEEEEeCCCCCcCCC--CCceEEEEecCCccccccCCchhhccccCCCCcccC
Q 012526          257 ------TC------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT  322 (461)
Q Consensus       257 ------~~------~~~~~~G~~~~~~~i~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~T  322 (461)
                            ..      ...+..+.+.+  .+.+.+.+++++++.  ++.|||+++|++++.||+++|+.+...| .+|||+|
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~T  424 (579)
T PLN03102        348 EWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNT  424 (579)
T ss_pred             ccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh-ccCceec
Confidence                  00      11222233333  456667666777764  3689999999999999999999999998 4799999


Q ss_pred             CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcCh
Q 012526          323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDK  398 (461)
Q Consensus       323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~  398 (461)
                      ||+|++++          +|.+++.||.+|+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.++|++.+
T Consensus       425 GDlg~~d~----------dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~  493 (579)
T PLN03102        425 GDVGVIHP----------DGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEK  493 (579)
T ss_pred             CceEEEcC----------CCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecC
Confidence            99999998          8999999999999997 8999999999999999999999999998764    5667887654


Q ss_pred             HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          399 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +......+      ........++++++++++|+.|+     .+..|.++++.|.+.+||+.
T Consensus       494 ~~~~~~~~------~~~~~~~~~~l~~~~~~~L~~~~-----~P~~i~~~~~~P~t~~gKi~  544 (579)
T PLN03102        494 GETTKEDR------VDKLVTRERDLIEYCRENLPHFM-----CPRKVVFLQELPKNGNGKIL  544 (579)
T ss_pred             cccccccc------cccccccHHHHHHHHHhhccccc-----CCeEEEEcccCCCCCccccc
Confidence            31000000      00001245789999999999997     67889999999999999974

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.5e-43  Score=439.96  Aligned_cols=331  Identities=21%  Similarity=0.269  Sum_probs=288.6

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      .....+++++||+|||||||.||||+++|+++.+.+.++...++++++|+++++.|++|..+....+.++..|+++++. 
T Consensus      3190 ~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~i~~~L~~G~~l~~~~ 3269 (5163)
T PRK12316       3190 AIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAG 3269 (5163)
T ss_pred             CCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecCccHHHHHHHHHHHHhCCCEEEEcC
Confidence            3446789999999999999999999999999999999988999999999999999999999988889999999999985 


Q ss_pred             -----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           98 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        98 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                           ++..+.+.+++++++++..+|+++..+......                                          
T Consensus      3270 ~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~~------------------------------------------ 3307 (5163)
T PRK12316       3270 PEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDA------------------------------------------ 3307 (5163)
T ss_pred             hhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcccc------------------------------------------
Confidence                 356788999999999999999999877542100                                          


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCcccee
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                         ..+..+|.+++|||++++++.+.+. .+.+++|.||+||++..++
T Consensus      3308 -----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~-~~~~l~n~YG~TE~~~~~~ 3351 (5163)
T PRK12316       3308 -----------------------------------HRCTSLKRIVCGGEALPADLQQQVF-AGLPLYNLYGPTEATITVT 3351 (5163)
T ss_pred             -----------------------------------ccCCcceEEEEccccCCHHHHHHHH-hCCcEeeccCCCccEeeEe
Confidence                                               1233458999999999988755444 5788999999999998776


Q ss_pred             ccCC--CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCC------CcccCCc
Q 012526          253 ARRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------GWLNTGD  324 (461)
Q Consensus       253 ~~~~--~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~------~~~~TGD  324 (461)
                      ....  ......++|+|++|++++|+| +.++++|.|+.|||+|.|+++++||+++|+.|++.|..+      +||+|||
T Consensus      3352 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGD 3430 (5163)
T PRK12316       3352 HWQCVEEGKDAVPIGRPIANRACYILD-GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGD 3430 (5163)
T ss_pred             EEeccCCCCCCCccceecCCCEEEEEC-CCCCCCCCCCCceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEecCc
Confidence            5432  223457899999999999999 568899999999999999999999999999999999543      6999999


Q ss_pred             eEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeEEEEEcChHHHHHH
Q 012526          325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA  404 (461)
Q Consensus       325 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~~~~~~~  404 (461)
                      +|++++          ||.++++||.|++||+ +|++|++.|||++|.+||+|.+|+|++.+.+.++|+|++..+     
T Consensus      3431 l~~~~~----------dG~l~~~GR~d~qvKi-~G~rIel~eIE~~l~~~~~V~~a~v~~~~~~~l~a~vv~~~~----- 3494 (5163)
T PRK12316       3431 LARYRA----------DGVIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDE----- 3494 (5163)
T ss_pred             eEEECC----------CCCEEEecccCCeEee-CcEeeChHHHHHHHHhCCCcceEEEEEccCCeEEEEEEcCCc-----
Confidence            999998          8999999999999998 899999999999999999999999999988899999998643     


Q ss_pred             HHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          405 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                 .....++++++++++|+.|+     .+..|.++++.|.+.|||+.
T Consensus      3495 -----------~~~~~~~l~~~l~~~Lp~ym-----vP~~~~~~~~lP~t~~GKvd 3534 (5163)
T PRK12316       3495 -----------AGDLREALKAHLKASLPEYM-----VPAHLLFLERMPLTPNGKLD 3534 (5163)
T ss_pred             -----------CcccHHHHHHHHHhhCCccc-----CcceeeeHhhcCCCCCcchh
Confidence                       23456789999999999998     55679999999999999985

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=6e-43  Score=431.43  Aligned_cols=337  Identities=20%  Similarity=0.255  Sum_probs=285.1

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      .....+++++|++|||||||.||||+++|+++.+.+.+....+++.++|+++++.|++|..+....+.++..|+++++. 
T Consensus       650 ~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lv~~~  729 (3956)
T PRK12467        650 EVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLP  729 (3956)
T ss_pred             CCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHHHHHhCCCEEEEcC
Confidence            3456789999999999999999999999999999999988899999999999999999999998889999999999985 


Q ss_pred             -----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           98 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        98 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                           ++..+++.|+++++|++.++|+++..+.+....                                          
T Consensus       730 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------------------------------------  767 (3956)
T PRK12467        730 PDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV------------------------------------------  767 (3956)
T ss_pred             ccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhcc------------------------------------------
Confidence                 467899999999999999999999888653211                                          


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccc
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPV  250 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~  250 (461)
                                                         .....+|.+++||+++++.+ +.+.+.+ +++++|.||+||++..
T Consensus       768 -----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~  812 (3956)
T PRK12467        768 -----------------------------------ALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVG  812 (3956)
T ss_pred             -----------------------------------ccCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhh
Confidence                                               11122388999999999887 4555554 6899999999999877


Q ss_pred             eeccCCCCC----CccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC-------CCc
Q 012526          251 IAARRPTCN----VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGW  319 (461)
Q Consensus       251 ~~~~~~~~~----~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~-------~~~  319 (461)
                      ++.......    ...++|+|+++++++|+| +.++++|.|+.|||+|+|+++++||+++|+.|.+.|..       ++|
T Consensus       813 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~  891 (3956)
T PRK12467        813 VSTYELSDEERDFGNVPIGQPLANLGLYILD-HYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRL  891 (3956)
T ss_pred             eeeEecccccccCCCCcccCCcCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCcee
Confidence            665433221    235699999999999999 45789999999999999999999999999999998843       349


Q ss_pred             ccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC---CCeeEEEEEc
Q 012526          320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVP  396 (461)
Q Consensus       320 ~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~---~~~~~a~vv~  396 (461)
                      |+|||+|++++          ||.++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+   .+.+++++++
T Consensus       892 yrTGDl~~~~~----------dG~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~  960 (3956)
T PRK12467        892 YRTGDLARYRA----------DGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVP  960 (3956)
T ss_pred             EecCceeEEcC----------CCcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEe
Confidence            99999999998          8999999999999998 89999999999999999999999999854   3478888886


Q ss_pred             ChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          397 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ....           .........++++++++++|+.|+     .+..|.++++.|.+.|||+.
T Consensus       961 ~~~~-----------~~~~~~~~~~~l~~~l~~~Lp~y~-----vP~~~~~l~~lP~t~~GKid 1008 (3956)
T PRK12467        961 AAVA-----------DGAEHQATRDELKAQLRQVLPDYM-----VPAHLLLLDSLPLTPNGKLD 1008 (3956)
T ss_pred             cccc-----------cccccccCHHHHHHHHHhhCchhc-----CCceEeeecccCCCCCCCcC
Confidence            4210           011123566899999999999998     56689999999999999985

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-42  Score=366.63  Aligned_cols=335  Identities=27%  Similarity=0.413  Sum_probs=271.1

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHH--hhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL--YDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~   97 (461)
                      ....++++++++|||||||.||+|.++|+++.......  .+.+++.++|++++.+|++|.+++...+.++..|.++++.
T Consensus       176 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~  255 (576)
T PRK05620        176 PELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFP  255 (576)
T ss_pred             CCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEec
Confidence            34577899999999999999999999999986554432  3456788999999999999999998888889999998874


Q ss_pred             ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                          ++..+++.+++++++.+.++|+++..+........                                         
T Consensus       256 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------------  294 (576)
T PRK05620        256 GPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-----------------------------------------  294 (576)
T ss_pred             CCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-----------------------------------------
Confidence                57889999999999999999999987765321110                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                        ....++|.+++||+++++.+ +.+.+.+++++++.||+||++..+.
T Consensus       295 ----------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  340 (576)
T PRK05620        295 ----------------------------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGT  340 (576)
T ss_pred             ----------------------------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeecccccccccee
Confidence                                              00113488999999998877 5556667999999999999987655


Q ss_pred             ccCCCC--------CCccccccCCCCeEEEEEeCCCCCcCC--CCCceEEEEecCCccccccCCchhh------------
Q 012526          253 ARRPTC--------NVLGSVGHPINHTEIKIVDAETNEVLP--AGSKGIVKVRGSQVMQGYFKNPSAT------------  310 (461)
Q Consensus       253 ~~~~~~--------~~~~~~G~~~~~~~i~i~d~~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~------------  310 (461)
                      ...+..        ....++|++.++++++++|+  +..++  .+..|||+++|+.++.||+++++.+            
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~  418 (576)
T PRK05620        341 VARPPSGVSGEARWAYRVSQGRFPASLEYRIVND--GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGED  418 (576)
T ss_pred             eeccCCccccccccccccccCCcCCceeEEEecC--CccccCCCCCceEEEEEcCcccccccCCcccccccccccccccc
Confidence            433211        11246799999999999984  55543  5789999999999999999999887            


Q ss_pred             ----ccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC
Q 012526          311 ----KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD  386 (461)
Q Consensus       311 ----~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~  386 (461)
                          ...|..++||+|||++++++          +|.+++.||.+|+|+. +|++|++.+||++|.+||.|.+|+|++.+
T Consensus       419 ~~~~~~~~~~~g~~~TGD~~~~~~----------dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~  487 (576)
T PRK05620        419 VEDANDRFTADGWLRTGDVGSVTR----------DGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYP  487 (576)
T ss_pred             chhhhcccccCCcEecCceEEEcC----------CceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEecc
Confidence                23344578999999999998          8999999999999995 89999999999999999999999999987


Q ss_pred             CC----eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          387 QR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       387 ~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++    .+.++++..++             ....+...++++++++++|+.|+     .|+.|.++++.|.+.+||+.
T Consensus       488 ~~~~g~~~~a~v~~~~~-------------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~~P~t~~GKv~  547 (576)
T PRK05620        488 DDKWGERPLAVTVLAPG-------------IEPTRETAERLRDQLRDRLPNWM-----LPEYWTFVDEIDKTSVGKFD  547 (576)
T ss_pred             CCCcCceeEEEEEecCC-------------CCcccccHHHHHHHHHhhCcccc-----CCeEEEEeccCCCCCcccCc
Confidence            64    34566665432             11123456899999999999997     66789999999999999974

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.4e-42  Score=374.67  Aligned_cols=336  Identities=16%  Similarity=0.114  Sum_probs=264.3

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcc---
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~---   98 (461)
                      .+++++++|+|||||||.||||+++|++++..+......+++.++|++++..|+.|+++....+.++..|+++++.+   
T Consensus       353 ~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p  432 (728)
T PLN03052        353 QPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSP  432 (728)
T ss_pred             cCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCC
Confidence            46689999999999999999999999998777666666678899999999999999999877778899999998853   


Q ss_pred             -hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHH
Q 012526           99 -VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  177 (461)
Q Consensus        99 -~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (461)
                       +..+++.++++++|++.++|+++..+.+.....                                              
T Consensus       433 ~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~----------------------------------------------  466 (728)
T PLN03052        433 LGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMA----------------------------------------------  466 (728)
T ss_pred             CCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcc----------------------------------------------
Confidence             467999999999999999999998775421000                                              


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-HHhC-CeeeeecccCCCccceecc-
Q 012526          178 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIG-VKVQVGYGLTESSPVIAAR-  254 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-~~~~-~~v~~~YG~tE~~~~~~~~-  254 (461)
                                                   ...+.++|.+++||++++++...+. +.++ ..+++.||+||+++.+... 
T Consensus       467 -----------------------------~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~  517 (728)
T PLN03052        467 -----------------------------GLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGS  517 (728)
T ss_pred             -----------------------------cCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCC
Confidence                                         0123345999999999988765444 4444 5799999999987644332 


Q ss_pred             CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCC--ceEEEEecCC--ccccccCCchhhccccC------CCCcccCCc
Q 012526          255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRGSQ--VMQGYFKNPSATKQALD------EDGWLNTGD  324 (461)
Q Consensus       255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~--~Gel~v~~~~--~~~gy~~~~~~~~~~f~------~~~~~~TGD  324 (461)
                      +.....++++|.|.+|++++|+| +++++++.|+  .|||+++++.  ...+|+++. .+...|.      .+.||+|||
T Consensus       518 ~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGD  595 (728)
T PLN03052        518 LLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGD  595 (728)
T ss_pred             CCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCc
Confidence            22234567899999999999999 5688889885  5999998653  334666653 2333331      223899999


Q ss_pred             eEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHh-cCccccEEEEEeCCC-----CeeEEEEEcCh
Q 012526          325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL-RSSLIRQIVVIGQDQ-----RRPGAIIVPDK  398 (461)
Q Consensus       325 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~-~~p~V~~a~V~~~~~-----~~~~a~vv~~~  398 (461)
                      ++++++          +|.++|+||.||+|++ +|++|++.|||++|. .||+|.+++|++.++     +.+.++||++.
T Consensus       596 l~~~d~----------dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~  664 (728)
T PLN03052        596 IFERTS----------GGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKD  664 (728)
T ss_pred             eEEECC----------CCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEec
Confidence            999999          8999999999999997 899999999999995 799999999999854     45778888751


Q ss_pred             HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          399 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +              +....+.++|++++++.|.+...+.. .+++|.++++.|.+.|||+.
T Consensus       665 ~--------------~g~~~~~~~L~~~i~~~i~~~l~~~~-~p~~i~~v~~lP~T~sGKi~  711 (728)
T PLN03052        665 P--------------PGSNPDLNELKKIFNSAIQKKLNPLF-KVSAVVIVPSFPRTASNKVM  711 (728)
T ss_pred             C--------------CCCCCCHHHHHHHHHHHHHhhcCCcc-CCCEEEEcCCCCCCCchHHH
Confidence            0              01234567888888888877655443 67899999999999999973

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.6e-44  Score=335.77  Aligned_cols=335  Identities=21%  Similarity=0.322  Sum_probs=290.9

Q ss_pred             cccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh--hhhhhccCe
Q 012526           15 KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGI   92 (461)
Q Consensus        15 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~l~~G~   92 (461)
                      ..-+..+.+++++++..-+.||||.||.+..+|....-++..-.+..+++..+++++.+|.-|-+.+.+  .+..++.|+
T Consensus       179 ~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG  258 (542)
T COG1021         179 LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGG  258 (542)
T ss_pred             cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeecc
Confidence            334456678889999999999999999999999999888888888899999999999999999999876  455699999


Q ss_pred             EEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCC
Q 012526           93 ELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  169 (461)
Q Consensus        93 ~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      ++|+.   ++.....+|+++++|+...+|.....+++..+...                                     
T Consensus       259 ~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~-------------------------------------  301 (542)
T COG1021         259 TVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER-------------------------------------  301 (542)
T ss_pred             EEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc-------------------------------------
Confidence            99994   57888999999999999999999988887654421                                     


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCc
Q 012526          170 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESS  248 (461)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~  248 (461)
                                                            ..++++|.+-+||+.+++++ ++....+|+.+.+.|||.|.-
T Consensus       302 --------------------------------------~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGL  343 (542)
T COG1021         302 --------------------------------------ADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGL  343 (542)
T ss_pred             --------------------------------------CCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhh
Confidence                                                  45566799999999999887 666677899999999999964


Q ss_pred             cceeccCCCC---CCccccccCC-CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCc
Q 012526          249 PVIAARRPTC---NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  324 (461)
Q Consensus       249 ~~~~~~~~~~---~~~~~~G~~~-~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGD  324 (461)
                      .  .+.+.++   .-..+-|+|+ |.=+++|+| ++++++++|++|+|.++||..++||++.|++++..|+.+|+|+|||
T Consensus       344 v--nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD  420 (542)
T COG1021         344 V--NYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGD  420 (542)
T ss_pred             h--cccccCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCc
Confidence            3  2333222   2234668988 678999999 5689999999999999999999999999999999999999999999


Q ss_pred             eEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHH
Q 012526          325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEE  400 (461)
Q Consensus       325 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~  400 (461)
                      ++++++          +|++.+.||.||+|+ .+|++|..+|||+.|.+||.|.+|++++.+|+.    .+|+||+++  
T Consensus       421 ~V~~~~----------dGyl~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~--  487 (542)
T COG1021         421 LVRRDP----------DGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE--  487 (542)
T ss_pred             eeEecC----------CceEEEEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecC--
Confidence            999999          999999999999999 599999999999999999999999999999865    458888874  


Q ss_pred             HHHHHHHcCCCcCCccccCcHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          401 VLMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                     ...+..+++.++++. |..|+     .+++|.+++..|.+.-||++
T Consensus       488 ---------------~~~~~~qlr~~L~~~GlAa~K-----~PDrie~v~~~P~T~VGKId  528 (542)
T COG1021         488 ---------------PPLRAAQLRRFLRERGLAAFK-----LPDRIEFVDSLPLTAVGKID  528 (542)
T ss_pred             ---------------CCCCHHHHHHHHHHcchhhhc-----CCcceeecccCCCccccccc
Confidence                           246788999999887 88887     77899999999999999985

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2.5e-42  Score=360.42  Aligned_cols=335  Identities=22%  Similarity=0.334  Sum_probs=276.1

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHH-HhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~   97 (461)
                      ....++++++++|||||||.||+|+++|+++...+.. ....+++.++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus       156 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~  235 (508)
T TIGR02262       156 AATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLM  235 (508)
T ss_pred             CCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEe
Confidence            3456789999999999999999999999999877665 455678899999999999999999865 44568889888774


Q ss_pred             ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                          ++..+++.+++++++++.++|.++..+.......                                          
T Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~------------------------------------------  273 (508)
T TIGR02262       236 GERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLP------------------------------------------  273 (508)
T ss_pred             CCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccc------------------------------------------
Confidence                4788999999999999999999887664321000                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                       ......+|.+++||+++++++ +.+.+.+++++++.||+||++..+.
T Consensus       274 ---------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~  320 (508)
T TIGR02262       274 ---------------------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFL  320 (508)
T ss_pred             ---------------------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceee
Confidence                                             011223488999999999887 5566678999999999999987666


Q ss_pred             ccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCC
Q 012526          253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  332 (461)
Q Consensus       253 ~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~  332 (461)
                      .+.......+++|+|.+++.++++| +++.++++|+.|||+++|+.++.||+++++.+...| .++||+|||++++++  
T Consensus       321 ~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~--  396 (508)
T TIGR02262       321 SNLPGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRND--  396 (508)
T ss_pred             cCCccCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcC--
Confidence            5444444567899999999999999 778999999999999999999999999999998888 579999999999988  


Q ss_pred             CCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHHHHHc
Q 012526          333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRL  408 (461)
Q Consensus       333 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~~~~~  408 (461)
                              +|.+++.||.+|+|++ +|.+|+|.+||++|.++++|.++++++.++    ..+.+++++.++.        
T Consensus       397 --------~g~~~~~gR~~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~--------  459 (508)
T TIGR02262       397 --------DGSYTYAGRTDDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQ--------  459 (508)
T ss_pred             --------CccEEEeccccceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCC--------
Confidence                    8999999999999997 799999999999999999999999999754    3456777765320        


Q ss_pred             CCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          409 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           .......++++++++++|+.++     .++.+.++++.|...+||+.
T Consensus       460 -----~~~~~~~~~i~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gKi~  501 (508)
T TIGR02262       460 -----DIDTALETELKEHVKDRLAPYK-----YPRWIVFVDDLPKTATGKIQ  501 (508)
T ss_pred             -----ccccccHHHHHHHHHHhcccCC-----CCceEEEecCCCCCCCCcEe
Confidence                 0112346788888888888876     56788999999999999974

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-42  Score=363.50  Aligned_cols=328  Identities=21%  Similarity=0.318  Sum_probs=261.9

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhh-hhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~-~l~~G~~~~~~--   97 (461)
                      ...++++++++|||||||.||+|.++|+++...+......+++.++|++++.+|++|.+++...+. ++..|+++++.  
T Consensus       146 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~  225 (540)
T PRK13388        146 EVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAK  225 (540)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCC
Confidence            356799999999999999999999999999988888888889999999999999999998876544 68899999874  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.+++++++++..+|..+..+.......                                             
T Consensus       226 ~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~---------------------------------------------  260 (540)
T PRK13388        226 FSASGFLDDVRRYGATYFNYVGKPLAYILATPERP---------------------------------------------  260 (540)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCc---------------------------------------------
Confidence             5788999999999999999999887665321000                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                    ......++ +.+||+..+.....+.+.++.++++.||+||++.++.... 
T Consensus       261 ------------------------------~~~~~~l~-~~~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-  308 (540)
T PRK13388        261 ------------------------------DDADNPLR-VAFGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP-  308 (540)
T ss_pred             ------------------------------cccccceE-EEECCCCCHHHHHHHHHHhCCceecccccccccceeecCC-
Confidence                                          00011124 3345555555567777888999999999999987665432 


Q ss_pred             CCCCccccccCCCCeEEE-----------EEeCCCCCcC-CCCCceEEEEe-cCCccccccCCchhhccccCCCCcccCC
Q 012526          257 TCNVLGSVGHPINHTEIK-----------IVDAETNEVL-PAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTG  323 (461)
Q Consensus       257 ~~~~~~~~G~~~~~~~i~-----------i~d~~~~~~~-~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~f~~~~~~~TG  323 (461)
                       ....+++|+|.+++++.           ++| +++.++ +.++.|||+++ |++++.||+++|+.+.+.| .+|||+||
T Consensus       309 -~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TG  385 (540)
T PRK13388        309 -GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSG  385 (540)
T ss_pred             -CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceecc
Confidence             23457899999997642           233 233333 45679999998 9999999999999999888 57999999


Q ss_pred             ceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChH
Q 012526          324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  399 (461)
Q Consensus       324 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~  399 (461)
                      |+|++++          +|.+++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    .+.+++++.++
T Consensus       386 D~~~~~~----------dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~  454 (540)
T PRK13388        386 DLAYRDA----------DGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDG  454 (540)
T ss_pred             ceEEEcC----------CCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCC
Confidence            9999998          8999999999999997 8999999999999999999999999998754    45566666432


Q ss_pred             HHHHHHHHcCCCcCCccccCcHHHHHHHHHH--HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          400 EVLMAAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                      ...+.++++++++.+  |+.++     .+..+.++++.|.+.+||+.
T Consensus       455 ----------------~~~~~~~l~~~l~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKv~  496 (540)
T PRK13388        455 ----------------ATFDPDAFAAFLAAQPDLGTKA-----WPRYVRIAADLPSTATNKVL  496 (540)
T ss_pred             ----------------CcCCHHHHHHHHHhhccCCccc-----CCcEEEEeccCCCCCcceee
Confidence                            345667888888754  66665     66789999999999999974

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.6e-42  Score=363.79  Aligned_cols=330  Identities=31%  Similarity=0.466  Sum_probs=269.3

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh-hhcCCCC-CcEEEEECChhhhHHHhh-hhhhhccCeEEEEc--
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY-DIVPAEN-GDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--   97 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~-~~~~~~~-~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~--   97 (461)
                      .++++++++|||||||.||+|.++|+++..+..... ..++... ++++++++|++|.+++.. .+.++..|+++++.  
T Consensus       204 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  283 (563)
T PRK06710        204 PENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK  283 (563)
T ss_pred             CCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence            357899999999999999999999999876543322 2234443 468899999999998865 44568888888874  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++|++.++|+++..+.+......                                            
T Consensus       284 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------------------  319 (563)
T PRK06710        284 FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKE--------------------------------------------  319 (563)
T ss_pred             CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcccc--------------------------------------------
Confidence             57889999999999999999999987764211000                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHH-HHHhCCeeeeecccCCCccceeccC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARR  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~-~~~~~~~v~~~YG~tE~~~~~~~~~  255 (461)
                                                     ..+..+|.+++||+++++.+.+. .+.++..+++.||+||++.++....
T Consensus       320 -------------------------------~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  368 (563)
T PRK06710        320 -------------------------------YDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNF  368 (563)
T ss_pred             -------------------------------CChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCc
Confidence                                           01122378999999999887544 4557899999999999987654332


Q ss_pred             C-CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          256 P-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       256 ~-~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                      . ....++++|++.+++.+++++++++.+++.|+.|||+++|+.++.||+++++.+...| .+|||+|||++++++    
T Consensus       369 ~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~----  443 (563)
T PRK06710        369 LWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDE----  443 (563)
T ss_pred             ccccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcC----
Confidence            2 2234568999999999999998889999999999999999999999999999998888 589999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  410 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~  410 (461)
                            +|.++++||.||+|++ +|.+|+|.+||++|.+||.|.+++|++.+++    .+.++++..+.           
T Consensus       444 ------~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------  505 (563)
T PRK06710        444 ------DGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEG-----------  505 (563)
T ss_pred             ------CCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCC-----------
Confidence                  8999999999999997 8999999999999999999999999998653    45677776532           


Q ss_pred             CcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          411 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       411 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           ...+.++++++++++|+.++     .++.|.++++.|.+.+||+.
T Consensus       506 -----~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKi~  545 (563)
T PRK06710        506 -----TECSEEELNQFARKYLAAYK-----VPKVYEFRDELPKTTVGKIL  545 (563)
T ss_pred             -----CCCCHHHHHHHHHHhccccc-----CCcEEEEcccCCCCccchhh
Confidence                 33567889999999888886     56789999999999999974

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.3e-42  Score=361.48  Aligned_cols=332  Identities=26%  Similarity=0.448  Sum_probs=268.5

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC----CC---CCcEEEEECChhhhHHHhh-hhhhhccC
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP----AE---NGDKFLSMLPPWHVYERAC-GYFIFSRG   91 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~----~~---~~d~~~~~~p~~~~~~~~~-~~~~l~~G   91 (461)
                      ....++++++++|||||||.||+|+++|++++.++......+.    ..   ..+.+++.+|++|.+++.. .+.++..|
T Consensus       199 ~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g  278 (557)
T PRK07059        199 VKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTG  278 (557)
T ss_pred             CCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhc
Confidence            4456789999999999999999999999999876544332221    11   2356788899999988754 44556777


Q ss_pred             eEEEEc----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccccccc
Q 012526           92 IELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR  167 (461)
Q Consensus        92 ~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      ++.++.    ++..+++.+++++++.+.++|.++..+........                                   
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~-----------------------------------  323 (557)
T PRK07059        279 GRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDK-----------------------------------  323 (557)
T ss_pred             ceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCc-----------------------------------
Confidence            766553    46778999999999999999999988765311100                                   


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCC
Q 012526          168 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTE  246 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE  246 (461)
                                                              ..+..++.++.||+++++.+ +++.+.+++++++.||+||
T Consensus       324 ----------------------------------------~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE  363 (557)
T PRK07059        324 ----------------------------------------LDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE  363 (557)
T ss_pred             ----------------------------------------CCchhheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence                                                    01223488899999998876 5566678999999999999


Q ss_pred             CccceeccCCC-CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCce
Q 012526          247 SSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  325 (461)
Q Consensus       247 ~~~~~~~~~~~-~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDl  325 (461)
                      ++.+++..... ....+++|.|+++++++++| +.+.+++.|+.|||+++|+.++.||+++++.+...|..+|||+|||+
T Consensus       364 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl  442 (557)
T PRK07059        364 TSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDV  442 (557)
T ss_pred             ccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcE
Confidence            98876654432 23457899999999999999 45788999999999999999999999999999988878999999999


Q ss_pred             EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHH
Q 012526          326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  401 (461)
Q Consensus       326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~  401 (461)
                      +++++          +|.+++.||.+|+|+. +|++|+|.+||+++.+||+|.+++|++.+++    .+.++++..+   
T Consensus       443 ~~~~~----------~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~---  508 (557)
T PRK07059        443 GVMDE----------RGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD---  508 (557)
T ss_pred             EEEcC----------CCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC---
Confidence            99998          8999999999999997 8999999999999999999999999987653    4556666432   


Q ss_pred             HHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          402 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                    ...+.++++++++++++.+.     ++.++.++++.|.+.+||+.
T Consensus       509 --------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~~P~t~~GK~~  548 (557)
T PRK07059        509 --------------PALTEEDVKAFCKERLTNYK-----RPKFVEFRTELPKTNVGKIL  548 (557)
T ss_pred             --------------CCCCHHHHHHHHHHhccccc-----CCcEEEEeccCCCCccccee
Confidence                          23566789999999998886     66789999999999999974

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-42  Score=359.01  Aligned_cols=331  Identities=21%  Similarity=0.265  Sum_probs=262.6

Q ss_pred             CeEEEEecCCCCCCchhhee--chHHHHHHH----HHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           26 DIATYVYTSGTTGNPKGVML--THKNLLHQI----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        26 ~~a~i~~TSGTTG~PK~v~~--sh~~l~~~~----~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      ++++++|||||||.||+|++  +|.++....    ......+.+..+|++++.+|++|.+++...+..+..|+++++.  
T Consensus       149 ~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~  228 (501)
T PRK13390        149 CGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKR  228 (501)
T ss_pred             ccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCC
Confidence            56999999999999999995  455544321    1123356788899999999999999886655566778888874  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++|.+.++|+++..+.........                                           
T Consensus       229 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------------------------  265 (501)
T PRK13390        229 FDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRT-------------------------------------------  265 (501)
T ss_pred             cCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcc-------------------------------------------
Confidence             578999999999999999999999888653211000                                           


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HHHHhCCeeeeecccCCCccceeccC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARR  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~~~~~~~v~~~YG~tE~~~~~~~~~  255 (461)
                                                    ...+..+|.+++||+++++.+.+ +.+.++..+++.||+||++.++....
T Consensus       266 ------------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  315 (501)
T PRK13390        266 ------------------------------RYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDS  315 (501)
T ss_pred             ------------------------------cCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecc
Confidence                                          00122348899999999988744 44557889999999999987654433


Q ss_pred             CC-CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC--CCcccCCceEeeccCC
Q 012526          256 PT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE--DGWLNTGDIGWIAPHH  332 (461)
Q Consensus       256 ~~-~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~--~~~~~TGDlg~~~~~~  332 (461)
                      .. ....+++|+|.++ .++++| ++++++++|+.|||++++++++.||+++|+.+...|..  ++||+|||+|++++  
T Consensus       316 ~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~--  391 (501)
T PRK13390        316 PDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDE--  391 (501)
T ss_pred             hhhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECC--
Confidence            22 2345789999999 699999 56889999999999999999999999999999888743  68999999999998  


Q ss_pred             CCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHc
Q 012526          333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  408 (461)
Q Consensus       333 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~  408 (461)
                              +|.+++.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.+++++..+.        
T Consensus       392 --------dg~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~--------  454 (501)
T PRK13390        392 --------DGYLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGI--------  454 (501)
T ss_pred             --------CCeEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCC--------
Confidence                    8999999999999997 8999999999999999999999999998754    455666654320        


Q ss_pred             CCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          409 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           .......++++++++++|+.|+     .++++.++++.|.+.+||+.
T Consensus       455 -----~~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~~~~iP~t~~GKi~  496 (501)
T PRK13390        455 -----RGSDELARELIDYTRSRIAHYK-----APRSVEFVDELPRTPTGKLV  496 (501)
T ss_pred             -----CcchhhHHHHHHHHHHhcccCC-----CCcEEEEeccCCCCCcccee
Confidence                 0011224678888998888876     67799999999999999974

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.7e-42  Score=351.75  Aligned_cols=346  Identities=19%  Similarity=0.222  Sum_probs=290.9

Q ss_pred             cccCcccCCCCCCCCCeEEEEecCCCCCCchhheechHHH-HHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhh
Q 012526           11 VIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIF   88 (461)
Q Consensus        11 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l   88 (461)
                      ..+.+..+++.++.+||.+|+|||||||.||++++++... +..+.....++.++++|++++.....++.+..+ .+.++
T Consensus       225 ~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl  304 (626)
T KOG1175|consen  225 KKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPL  304 (626)
T ss_pred             hhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhh
Confidence            3566777799999999999999999999999999998854 455566777889999999999999999888876 45579


Q ss_pred             ccCeEEEEc-----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012526           89 SRGIELMYT-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGF  163 (461)
Q Consensus        89 ~~G~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (461)
                      ..|++++++     ++..+++.+.++++|.+.+.|+.++.+.+.......                              
T Consensus       305 ~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~------------------------------  354 (626)
T KOG1175|consen  305 LNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVT------------------------------  354 (626)
T ss_pred             hcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccc------------------------------
Confidence            999999984     578899999999999999999999888664332210                              


Q ss_pred             ccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCC-eeeee
Q 012526          164 CLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVG  241 (461)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~-~v~~~  241 (461)
                                                                 ..++.++|.+.++||++.++. ..+.+.++. .|++.
T Consensus       355 -------------------------------------------~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~  391 (626)
T KOG1175|consen  355 -------------------------------------------SYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYET  391 (626)
T ss_pred             -------------------------------------------ccccceEEEEeecCccCCcchHHHHHHhcCccchhhc
Confidence                                                       022244699999999997776 555566777 59999


Q ss_pred             cccCCCccceeccCCCC--CCccccccCCCCeEEEEEeCCCCCcCCCC-CceEEEEecC---CccccccCCchhhccccC
Q 012526          242 YGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAG-SKGIVKVRGS---QVMQGYFKNPSATKQALD  315 (461)
Q Consensus       242 YG~tE~~~~~~~~~~~~--~~~~~~G~~~~~~~i~i~d~~~~~~~~~g-~~Gel~v~~~---~~~~gy~~~~~~~~~~f~  315 (461)
                      ||+||+|..+..+.+..  ..+++.+.|..++.+.|+|+ .+..++.+ +.|+|+++.+   +++++||+|++.......
T Consensus       392 ~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de-~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf  470 (626)
T KOG1175|consen  392 YGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDE-NGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYF  470 (626)
T ss_pred             eeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECC-CCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhc
Confidence            99999999888777666  78899999999999999995 67777766 8999999884   789999999985544432


Q ss_pred             C--CCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----e
Q 012526          316 E--DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----R  389 (461)
Q Consensus       316 ~--~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~  389 (461)
                      .  .|+|.|||.+++|+          ||+++++||.||+|++ +|.++++.|||+++..||.|.|++|+|.+++    .
T Consensus       471 ~k~pg~y~tGD~~~rd~----------dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~  539 (626)
T KOG1175|consen  471 KKFPGYYFTGDGGRRDE----------DGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEV  539 (626)
T ss_pred             ccCCceEEecCceEEcC----------CceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeE
Confidence            3  79999999999998          9999999999999997 8999999999999999999999999999765    5


Q ss_pred             eEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCcc
Q 012526          390 PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  459 (461)
Q Consensus       390 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~  459 (461)
                      +.|||++++.                 ..+.++|++.++..+++...|.. .+++|.++++.|++-|||+
T Consensus       540 v~aFvvl~~g-----------------~~~~~~L~kel~~~VR~~igp~a-~P~~I~~v~~LPkTrSGKi  591 (626)
T KOG1175|consen  540 VLAFVVLKSG-----------------SHDPEQLTKELVKHVRSVIGPYA-VPRLIVFVPGLPKTRSGKI  591 (626)
T ss_pred             EEEEEEEcCC-----------------CCChHHHHHHHHHHHHhhcCccc-ccceeEecCCCCccccchh
Confidence            6689988753                 45667777777777777777766 8899999999999999996

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.2e-42  Score=356.94  Aligned_cols=328  Identities=21%  Similarity=0.260  Sum_probs=266.3

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHH--HHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE---c
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLL--HQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---T   97 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~--~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~---~   97 (461)
                      ..++.++++|||||||.||+|+++|....  .........+++.++|++++.+|++|.+++...+.++..|++++.   +
T Consensus       172 ~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~  251 (516)
T PRK13383        172 VAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHF  251 (516)
T ss_pred             CCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCC
Confidence            34567899999999999999999997432  122223345678899999999999999999877778889999887   3


Q ss_pred             chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHH
Q 012526           98 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  177 (461)
Q Consensus        98 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (461)
                      ++..+++.++++++|.+.++|+++..+.+......                                             
T Consensus       252 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------  286 (516)
T PRK13383        252 DAEAALAQASLHRADAFTAVPVVLARILELPPRVR---------------------------------------------  286 (516)
T ss_pred             CHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc---------------------------------------------
Confidence            67889999999999999999999988765321100                                             


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceeccCC
Q 012526          178 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                  ....+..+|.+++||+++++++ +.+.+.++..+++.||+||++..+.....
T Consensus       287 ----------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~  338 (516)
T PRK13383        287 ----------------------------ARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPA  338 (516)
T ss_pred             ----------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceecccc
Confidence                                        0012344589999999998877 55667789999999999999866554332


Q ss_pred             C-CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCC
Q 012526          257 T-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  335 (461)
Q Consensus       257 ~-~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~  335 (461)
                      . ....+++|+|.++++++|+| ++++++++|+.|||+++|+.++.||++++..   .+ .+|||+|||+|++++     
T Consensus       339 ~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~-----  408 (516)
T PRK13383        339 DLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDN-----  408 (516)
T ss_pred             ccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchh---he-ecCceecceeEEEcC-----
Confidence            2 23457899999999999999 4578899999999999999999999987542   22 479999999999998     


Q ss_pred             cccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCC
Q 012526          336 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  411 (461)
Q Consensus       336 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~  411 (461)
                           +|++++.||.||+|++ +|++|+|.+||++|.+||.|.+++|++.+++    .+.++|++++.            
T Consensus       409 -----~G~l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~------------  470 (516)
T PRK13383        409 -----AGRLFIVGREDDMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPG------------  470 (516)
T ss_pred             -----CccEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC------------
Confidence                 8999999999999997 8999999999999999999999999997654    45677776532            


Q ss_pred             cCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          412 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       412 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                          ...+.++++++++++++.|+     ++.+|.++++.|.+.+||+.
T Consensus       471 ----~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~gKi~  510 (516)
T PRK13383        471 ----SGVDAAQLRDYLKDRVSRFE-----QPRDINIVSSIPRNPTGKVL  510 (516)
T ss_pred             ----CCCCHHHHHHHHHHhcccCC-----CCcEEEEeCCCCCCCCCcCc
Confidence                23456789999998888775     67799999999999999974

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=9.1e-42  Score=360.50  Aligned_cols=332  Identities=28%  Similarity=0.428  Sum_probs=269.5

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC----CCCC-cEEEEECChhhhHHHhh-hhhhhccCeE
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP----AENG-DKFLSMLPPWHVYERAC-GYFIFSRGIE   93 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~----~~~~-d~~~~~~p~~~~~~~~~-~~~~l~~G~~   93 (461)
                      ....++++++++|||||||.||+|+++|+++...+......++    +.++ +++++.+|++|.+++.. .+.++..|++
T Consensus       203 ~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  282 (560)
T PRK08751        203 LQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGC  282 (560)
T ss_pred             CCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccce
Confidence            3456789999999999999999999999999887766555443    3333 56778899999999754 3445566666


Q ss_pred             EEEc----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCC
Q 012526           94 LMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  169 (461)
Q Consensus        94 ~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      .++.    ++..+++.++++++|++.++|.++..+.+......                                     
T Consensus       283 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------------------------  325 (560)
T PRK08751        283 NHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQ-------------------------------------  325 (560)
T ss_pred             EEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCC-------------------------------------
Confidence            5542    46789999999999999999999977765211000                                     


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCc
Q 012526          170 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESS  248 (461)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~  248 (461)
                                                            ..+.++|.+++||+++++.+ ..+.+.+++.+++.||+||++
T Consensus       326 --------------------------------------~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  367 (560)
T PRK08751        326 --------------------------------------IDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETS  367 (560)
T ss_pred             --------------------------------------cchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCC
Confidence                                                  01223488999999998887 455555789999999999998


Q ss_pred             cceeccCCC-CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEe
Q 012526          249 PVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  327 (461)
Q Consensus       249 ~~~~~~~~~-~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~  327 (461)
                      ..++.+... ....+++|.|.+++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...|..+|||+|||+|+
T Consensus       368 ~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~  446 (560)
T PRK08751        368 PAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIAR  446 (560)
T ss_pred             CceecccccccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEE
Confidence            776554322 23457899999999999999 5678899999999999999999999999999999998889999999999


Q ss_pred             eccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHH
Q 012526          328 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  403 (461)
Q Consensus       328 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~  403 (461)
                      +++          +|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.+++    .+.++++...     
T Consensus       447 ~~~----------~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~-----  510 (560)
T PRK08751        447 MDE----------QGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKD-----  510 (560)
T ss_pred             EcC----------CceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCC-----
Confidence            998          8999999999999997 8999999999999999999999999998654    3444554331     


Q ss_pred             HHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          404 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                  ...+.++++++++++++.|+     .++.|.++++.|.+.+||+.
T Consensus       511 ------------~~~~~~~l~~~~~~~l~~~~-----~P~~v~~v~~lP~t~~gKv~  550 (560)
T PRK08751        511 ------------PALTAEDVKAHARANLTGYK-----QPRIIEFRKELPKTNVGKIL  550 (560)
T ss_pred             ------------CCCCHHHHHHHHHHhhhhcc-----CCeEEEEhhhCCCCcccccc
Confidence                        23567889999999999987     66789999999999999973

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.1e-41  Score=354.85  Aligned_cols=334  Identities=24%  Similarity=0.272  Sum_probs=271.1

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc----
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~----   97 (461)
                      ..++++++++|||||||.||+|+++|+++...+.+....+++..++++++..|++|..++...+.++..|+++++.    
T Consensus       138 ~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~  217 (502)
T TIGR01734       138 VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDI  217 (502)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHH
Confidence            4678999999999999999999999999998888888888899999999999999999988788889999999874    


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.+.+++++.+.++|.++..+.......                                            
T Consensus       218 ~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~--------------------------------------------  253 (502)
T TIGR01734       218 TNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN--------------------------------------------  253 (502)
T ss_pred             hcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc--------------------------------------------
Confidence              3577899999999999999999987664321000                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccceec
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~~  253 (461)
                                                     ...+..++.++++|+++++.. +.+.+.+ ++.+++.||+||++..+..
T Consensus       254 -------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~  302 (502)
T TIGR01734       254 -------------------------------QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTS  302 (502)
T ss_pred             -------------------------------cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEE
Confidence                                           012334588899999998876 5556666 7899999999998764432


Q ss_pred             cCC-----CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccC---CCCcccCCce
Q 012526          254 RRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD---EDGWLNTGDI  325 (461)
Q Consensus       254 ~~~-----~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~---~~~~~~TGDl  325 (461)
                      ...     ......++|.+.++++++|+|+ .+.+++.|+.|||+++|+.++.||+++++.+...|.   ..+||+|||+
T Consensus       303 ~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDl  381 (502)
T TIGR01734       303 VKITQEILDQYPRLPIGFAKPDMNLFIMDE-EGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDA  381 (502)
T ss_pred             EEccccccccCCccccccccCCCEEEEECC-CCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCE
Confidence            211     1122357899999999999995 478889999999999999999999999998887762   2469999999


Q ss_pred             EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC-----CCeeEEEEEcChHH
Q 012526          326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-----QRRPGAIIVPDKEE  400 (461)
Q Consensus       326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~-----~~~~~a~vv~~~~~  400 (461)
                      |++++          + .+++.||.+|+|++ +|++|+|.+||+++.++|.|++++|++..     .+.+.+++++..+.
T Consensus       382 g~~~~----------~-~l~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~  449 (502)
T TIGR01734       382 GTITD----------G-QLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETED  449 (502)
T ss_pred             EEEEC----------C-EEEEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccc
Confidence            99997          5 99999999999997 89999999999999999999999999842     23567777775431


Q ss_pred             HHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          401 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      .            .....-.++++++++++|+.+.     .++++.++++.|.+.+||+.
T Consensus       450 ~------------~~~~~~~~~i~~~~~~~l~~~~-----~P~~~~~v~~lP~t~~gKv~  492 (502)
T TIGR01734       450 F------------EKEFQLTKAIKKELKKSLPAYM-----IPRKFIYRDQLPLTANGKID  492 (502)
T ss_pred             c------------ccchhhHHHHHHHHhhhChhhc-----CCcEEEEccccCCCCCCccc
Confidence            0            0001112667888888888775     77899999999999999974

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.8e-41  Score=338.49  Aligned_cols=310  Identities=26%  Similarity=0.320  Sum_probs=249.1

Q ss_pred             ccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEE
Q 012526           16 HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM   95 (461)
Q Consensus        16 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~   95 (461)
                      ........++|+++++|||||||.||+|+++|+++..........+  ...++++..+|++|.+++...+.++..|++.+
T Consensus        26 ~~~~~~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v  103 (358)
T PRK07824         26 ALRVGEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV  103 (358)
T ss_pred             hhhcCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence            3444455678999999999999999999999999988777655544  34578889999999999887777888888877


Q ss_pred             E------cchhhHHHHHhHhC--CcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccccccc
Q 012526           96 Y------TAVRNLKDDLQRYQ--PHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR  167 (461)
Q Consensus        96 ~------~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .      +++..+++.+++++  .++...+|..+..+.....                                      
T Consensus       104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~--------------------------------------  145 (358)
T PRK07824        104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA--------------------------------------  145 (358)
T ss_pred             ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc--------------------------------------
Confidence            6      35788999999998  4455556766644432100                                      


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCC
Q 012526          168 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTES  247 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~  247 (461)
                                                            ....+.+++.+++||+++++.+.+....+++++++.||+||+
T Consensus       146 --------------------------------------~~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~  187 (358)
T PRK07824        146 --------------------------------------ATAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSET  187 (358)
T ss_pred             --------------------------------------ccCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCcc
Confidence                                                  002234458999999999998866666679999999999998


Q ss_pred             ccceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEe
Q 012526          248 SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  327 (461)
Q Consensus       248 ~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~  327 (461)
                      +..+.          ..|.|.+++++++.+            |||+++|+.++.||++++..+  .|..++||+|||+|+
T Consensus       188 ~~~~~----------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~  243 (358)
T PRK07824        188 SGGCV----------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGA  243 (358)
T ss_pred             CCCcC----------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCCceecccEEE
Confidence            75432          248899999999833            899999999999999987643  455678999999999


Q ss_pred             eccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHH
Q 012526          328 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  403 (461)
Q Consensus       328 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~  403 (461)
                      + +          +|.+++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    .+.++++...+    
T Consensus       244 ~-~----------~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~----  307 (358)
T PRK07824        244 L-D----------DGVLTVLGRADDAIST-GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGG----  307 (358)
T ss_pred             E-e----------CCEEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCC----
Confidence            9 6          7999999999999997 8999999999999999999999999998764    34566655421    


Q ss_pred             HHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          404 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                  .....++++++++++|+.|+     .+++|.++++.|.+.+||+.
T Consensus       308 ------------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~  347 (358)
T PRK07824        308 ------------PAPTLEALRAHVARTLDRTA-----APRELHVVDELPRRGIGKVD  347 (358)
T ss_pred             ------------CCcCHHHHHHHHHhhCcccc-----CCCEEEEecCCCCCCCcccc
Confidence                        34577889999999999886     66789999999999999974

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=6.6e-42  Score=425.51  Aligned_cols=333  Identities=22%  Similarity=0.234  Sum_probs=283.0

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      ....+++++||+|||||||.||||+++|+++.+.+.+....++++++|+++...+++|..+....+.++..|+++++.  
T Consensus      3864 ~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~ 3943 (4334)
T PRK05691       3864 IYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPN 3943 (4334)
T ss_pred             CCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCc
Confidence            345788999999999999999999999999999999888899999999999999999999999999999999999885  


Q ss_pred             ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                          ++..+++.++++++|++.++|+++..+.....                                            
T Consensus      3944 ~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~-------------------------------------------- 3979 (4334)
T PRK05691       3944 AIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDR-------------------------------------------- 3979 (4334)
T ss_pred             cccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc--------------------------------------------
Confidence                36789999999999999999999987754210                                            


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccce
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI  251 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~  251 (461)
                                                        ..+..+|.+++||+++++++ +.|.+.+ +++++|.||+||++..+
T Consensus      3980 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~ 4025 (4334)
T PRK05691       3980 ----------------------------------QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDV 4025 (4334)
T ss_pred             ----------------------------------ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEE
Confidence                                              12334589999999999876 6666664 78999999999998876


Q ss_pred             eccCCCC----CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC-------CCcc
Q 012526          252 AARRPTC----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGWL  320 (461)
Q Consensus       252 ~~~~~~~----~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~-------~~~~  320 (461)
                      +......    ....++|+|++|+.+.|+| +.++++|.|..|||+|+|+++++||+++|+.|++.|..       ++||
T Consensus      4026 ~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~y 4104 (4334)
T PRK05691       4026 AFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLY 4104 (4334)
T ss_pred             EEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceee
Confidence            5433211    2234699999999999999 66889999999999999999999999999999999843       4699


Q ss_pred             cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeC---CCCeeEEEEEcC
Q 012526          321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ---DQRRPGAIIVPD  397 (461)
Q Consensus       321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~---~~~~~~a~vv~~  397 (461)
                      +|||+|++++          ||.++++||.|++||+ +|++|++.|||++|.++|+|.+|+|+..   ..+.+.|++++.
T Consensus      4105 rTGDl~~~~~----------dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~ 4173 (4334)
T PRK05691       4105 RTGDLARRRS----------DGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPH 4173 (4334)
T ss_pred             ccCcceeecC----------CCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCC
Confidence            9999999998          8999999999999998 8999999999999999999999988743   345788898875


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ...             .......++++++++++|+.|+     .|..|..+++.|.+.|||+.
T Consensus      4174 ~~~-------------~~~~~~~~~l~~~l~~~Lp~ym-----vP~~~~~~~~lP~t~~GKid 4218 (4334)
T PRK05691       4174 QTV-------------LAQGALLERIKQRLRAELPDYM-----VPLHWLWLDRLPLNANGKLD 4218 (4334)
T ss_pred             ccc-------------ccchHHHHHHHHHHHhhCChhh-----cCcceeecccCCCCCCCccc
Confidence            431             0011234678999999999999     55678889999999999975

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-41  Score=352.89  Aligned_cols=332  Identities=22%  Similarity=0.258  Sum_probs=272.2

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHH---HHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l---~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      ..++++++++|||||||.||+|.++|.+.   ..........+++.+++++++.+|++|..+....+.++..|+++++. 
T Consensus       149 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~  228 (509)
T PRK12406        149 PPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP  228 (509)
T ss_pred             CCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEcc
Confidence            35689999999999999999999876654   33334455677889999999999999998887777788889988874 


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.++++++|++.++|+++..++.......                                           
T Consensus       229 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------------------  265 (509)
T PRK12406        229 RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVR-------------------------------------------  265 (509)
T ss_pred             CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhc-------------------------------------------
Confidence              57889999999999999999999988765321100                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HHHHhCCeeeeecccCCCccceecc
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                    ....+..+|.+++||+++++++.+ +.+.++..+++.||+||++.++...
T Consensus       266 ------------------------------~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  315 (509)
T PRK12406        266 ------------------------------AKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFAT  315 (509)
T ss_pred             ------------------------------ccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecC
Confidence                                          001234458999999999988754 4455689999999999999866544


Q ss_pred             CCC-CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccc-cccCCchhhccccCCCCcccCCceEeeccCC
Q 012526          255 RPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQ-GYFKNPSATKQALDEDGWLNTGDIGWIAPHH  332 (461)
Q Consensus       255 ~~~-~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~-gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~  332 (461)
                      ... ...++++|.+.++++++++| +++++++.|+.|||+++++.++. +|+++++.+...+ .++||+|||++++++  
T Consensus       316 ~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~--  391 (509)
T PRK12406        316 SEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDA--  391 (509)
T ss_pred             cccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcC--
Confidence            322 24557899999999999999 45788999999999999998765 9999998887766 689999999999998  


Q ss_pred             CCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHc
Q 012526          333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  408 (461)
Q Consensus       333 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~  408 (461)
                              +|.+++.||.||+|+. +|++|++.+||++|.++|+|.+++|++.+++    .+.+++++...         
T Consensus       392 --------~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  453 (509)
T PRK12406        392 --------DGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG---------  453 (509)
T ss_pred             --------CceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCC---------
Confidence                    8999999999999996 8999999999999999999999999998654    35567766432         


Q ss_pred             CCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          409 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                             .....++++++++++++.|+     .+..+.++++.|.+.+||+.
T Consensus       454 -------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~t~~GK~~  493 (509)
T PRK12406        454 -------ATLDEADIRAQLKARLAGYK-----VPKHIEIMAELPREDSGKIF  493 (509)
T ss_pred             -------CCCCHHHHHHHHHHhcccCC-----CCcEEEEeccCCCCCccchh
Confidence                   23467889999999999886     66789999999999999973

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2.6e-41  Score=355.62  Aligned_cols=333  Identities=27%  Similarity=0.433  Sum_probs=269.7

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh-----hcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEE
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIEL   94 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~-----~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~   94 (461)
                      ...++++++++|||||||.||+|+++|+++.........     .+.....+++++.+|++|.+++.. .+.++..|+++
T Consensus       188 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~  267 (541)
T TIGR03205       188 AVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLI  267 (541)
T ss_pred             CCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEE
Confidence            456789999999999999999999999998765442211     122334578999999999988766 44568888888


Q ss_pred             EEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526           95 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus        95 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                      +..   ++..+++.|+++++|++.++|+++..+.+.....                                        
T Consensus       268 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------------  307 (541)
T TIGR03205       268 SLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLE----------------------------------------  307 (541)
T ss_pred             EecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcccc----------------------------------------
Confidence            774   5788999999999999999999998775421000                                        


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-HHhCCeeeeecccCCCccc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPV  250 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-~~~~~~v~~~YG~tE~~~~  250 (461)
                                                         ...+..++.++.||+++++.+.++. +.++..+++.||+||++..
T Consensus       308 -----------------------------------~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  352 (541)
T TIGR03205       308 -----------------------------------KRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSP  352 (541)
T ss_pred             -----------------------------------ccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcc
Confidence                                               0112334899999999998875554 4579999999999999877


Q ss_pred             eeccCCC-CCCccccccCCCCeEEEEEe-CCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEee
Q 012526          251 IAARRPT-CNVLGSVGHPINHTEIKIVD-AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  328 (461)
Q Consensus       251 ~~~~~~~-~~~~~~~G~~~~~~~i~i~d-~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~  328 (461)
                      ++..... ...++++|.+.+++.+++.+ .+.+++++.|+.|||+++|++++.||+++|+.+++.|. ++||+|||++++
T Consensus       353 ~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~  431 (541)
T TIGR03205       353 GTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTGDIGYM  431 (541)
T ss_pred             cccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhc-cCCcccCceEEE
Confidence            6654332 23457899999999998865 35678899999999999999999999999999988884 789999999999


Q ss_pred             ccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHH
Q 012526          329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  404 (461)
Q Consensus       329 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~  404 (461)
                      ++          +|.+++.||.||+|+. +|++|+|.+||+++.+|+.|.+++|++.+++    .+.+++++.++     
T Consensus       432 ~~----------~g~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-----  495 (541)
T TIGR03205       432 DT----------DGYFFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPG-----  495 (541)
T ss_pred             cC----------CceEEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCC-----
Confidence            98          8999999999999996 8999999999999999999999999998654    45677776532     


Q ss_pred             HHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          405 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ....+.++++++++++|+.|+     .+++|.++++.|...+||+.
T Consensus       496 ----------~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~gK~~  536 (541)
T TIGR03205       496 ----------AKPFSLDELRAFLAGKLGKHE-----LPVAVEFVDELPRTPVGKLS  536 (541)
T ss_pred             ----------CCcCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCccccee
Confidence                      122467889999999999886     66799999999999999974

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.2e-41  Score=348.84  Aligned_cols=309  Identities=26%  Similarity=0.387  Sum_probs=261.7

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcchh
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVR  100 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~  100 (461)
                      ...++++++++|||||||.||+|.+||++++..+......+++.++|++++.+|++|.+++...+.++..|+++++.+..
T Consensus       131 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~~  210 (458)
T PRK09029        131 AWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDKQ  210 (458)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCChH
Confidence            45678999999999999999999999999999988888888999999999999999999987777789999999998767


Q ss_pred             hHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHHH
Q 012526          101 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  180 (461)
Q Consensus       101 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (461)
                      .++..+.  +++.+..+|+++..+......                                                  
T Consensus       211 ~~~~~i~--~~t~~~~~P~~~~~l~~~~~~--------------------------------------------------  238 (458)
T PRK09029        211 PLEQALA--GCTHASLVPTQLWRLLDNRSE--------------------------------------------------  238 (458)
T ss_pred             HHHHHHh--hceeeecChHHHHHHHhcccc--------------------------------------------------
Confidence            7777774  788888899988777542110                                                  


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCCCCCC
Q 012526          181 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV  260 (461)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  260 (461)
                                                   ...++.+++||+++++.+.+....++.++++.||+||++...+.....  .
T Consensus       239 -----------------------------~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~--~  287 (458)
T PRK09029        239 -----------------------------PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMASTVCAKRAD--G  287 (458)
T ss_pred             -----------------------------CCcceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCcceeccCCC--C
Confidence                                         112488999999999988666667799999999999998765543322  2


Q ss_pred             ccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCccccc
Q 012526          261 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC  340 (461)
Q Consensus       261 ~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~  340 (461)
                      ..++|+|++++++++++            |||+++|+.++.||+++++.+.... .++||+|||+|+++           
T Consensus       288 ~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-----------  343 (458)
T PRK09029        288 LAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-----------  343 (458)
T ss_pred             CCCCCCCCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-----------
Confidence            34689999999999976            7999999999999999988876544 58999999999998           


Q ss_pred             CCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCcCCcc
Q 012526          341 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADAS  416 (461)
Q Consensus       341 ~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~  416 (461)
                      +|.+++.||.||+|++ +|++|+|.+||++|.+||+|.+++|++.+++    .+.++|+.+                  .
T Consensus       344 ~g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~------------------~  404 (458)
T PRK09029        344 NGELTILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESD------------------S  404 (458)
T ss_pred             CCEEEEecccccceee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcC------------------c
Confidence            4999999999999997 8999999999999999999999999998765    456777654                  2


Q ss_pred             ccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          417 ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       417 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ..+.++++++++++|+.|+     +|.++.++++.|.+.+||+.
T Consensus       405 ~~~~~~l~~~~~~~l~~~~-----~P~~~~~~~~~p~t~~gKi~  443 (458)
T PRK09029        405 EAAVVNLAEWLQDKLARFQ-----QPVAYYLLPPELKNGGIKIS  443 (458)
T ss_pred             ccCHHHHHHHHHhhchhcc-----CCeEEEEecccccCcCCCcC
Confidence            2467899999999999997     67789999988999999974

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=8.2e-42  Score=424.68  Aligned_cols=330  Identities=21%  Similarity=0.297  Sum_probs=283.8

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---   97 (461)
                      ...+++++|++|||||||.||||+++|+++.+.+.+....++++++|++++..|++|..+....+.++..|+++++.   
T Consensus      1269 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~ 1348 (4334)
T PRK05691       1269 HLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPG 1348 (4334)
T ss_pred             CCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCcc
Confidence            45678999999999999999999999999999998888889999999999999999999988888999999999985   


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|+++..+......                                            
T Consensus      1349 ~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~-------------------------------------------- 1384 (4334)
T PRK05691       1349 EHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA-------------------------------------------- 1384 (4334)
T ss_pred             ccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc--------------------------------------------
Confidence               467899999999999999999999887542100                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCcccee
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~  252 (461)
                                                       ..+..+|.+++||+++++.+ +.+.+.+ +++++|.||+||++..++
T Consensus      1385 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 1431 (4334)
T PRK05691       1385 ---------------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVT 1431 (4334)
T ss_pred             ---------------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeee
Confidence                                             12334589999999999887 5566666 789999999999987665


Q ss_pred             ccC--CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC-------CCcccCC
Q 012526          253 ARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGWLNTG  323 (461)
Q Consensus       253 ~~~--~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~-------~~~~~TG  323 (461)
                      ...  .......++|+|++++.++|+| +.++++|.|+.|||+|+|+++++||+++|+.|.+.|..       .+||+||
T Consensus      1432 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1510 (4334)
T PRK05691       1432 HWQCQAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTG 1510 (4334)
T ss_pred             eeecccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEcc
Confidence            432  2233456899999999999999 55889999999999999999999999999999998843       3599999


Q ss_pred             ceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC---CeeEEEEEcChHH
Q 012526          324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEE  400 (461)
Q Consensus       324 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~---~~~~a~vv~~~~~  400 (461)
                      |+|++++          ||.++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++   +.+.++++...+ 
T Consensus      1511 Dl~~~~~----------dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~- 1578 (4334)
T PRK05691       1511 DRARWNA----------DGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAG- 1578 (4334)
T ss_pred             ceEEECC----------CCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCC-
Confidence            9999999          8999999999999998 899999999999999999999999997643   467788876532 


Q ss_pred             HHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          401 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                     .....++++++++++|+.|+     .|..|..+++.|.+.|||+.
T Consensus      1579 ---------------~~~~~~~l~~~l~~~Lp~y~-----vP~~~~~~~~lP~t~~GKid 1618 (4334)
T PRK05691       1579 ---------------QEAEAERLKAALAAELPEYM-----VPAQLIRLDQMPLGPSGKLD 1618 (4334)
T ss_pred             ---------------CCCCHHHHHHHHHHhCcccc-----CCcEEEEccccCCCCCCCcC
Confidence                           33456799999999999998     55689999999999999985

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-41  Score=357.47  Aligned_cols=331  Identities=25%  Similarity=0.332  Sum_probs=265.2

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh-hcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-   97 (461)
                      ...++++++++|||||||.||+|.+||+++...+..... ...+.++|++++++|++|++++.. .+.++..|+++++. 
T Consensus       205 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~  284 (567)
T PRK06178        205 PPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA  284 (567)
T ss_pred             CCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC
Confidence            356789999999999999999999999999876655433 356788999999999999999864 55668999999884 


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..++..+++++++.+.++|..+..+........                                           
T Consensus       285 ~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~-------------------------------------------  321 (567)
T PRK06178        285 RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAE-------------------------------------------  321 (567)
T ss_pred             CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCC-------------------------------------------
Confidence              57889999999999999999988877654210000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeE--EeccCCCchhHH-HHHHHhCCeeee-ecccCCCccce
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAG--VSGGGSLPMHID-LFYEAIGVKVQV-GYGLTESSPVI  251 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i--~~gg~~l~~~~~-~~~~~~~~~v~~-~YG~tE~~~~~  251 (461)
                                                      ..+..++.+  .+.++.++++.. .+.+.++..++. .||+||++..+
T Consensus       322 --------------------------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~  369 (567)
T PRK06178        322 --------------------------------YDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCD  369 (567)
T ss_pred             --------------------------------CCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccc
Confidence                                            001112443  334577877764 445556776665 79999987654


Q ss_pred             eccCC---C----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCc
Q 012526          252 AARRP---T----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  324 (461)
Q Consensus       252 ~~~~~---~----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGD  324 (461)
                      .....   .    ...++++|.|++|++++++|++++++++.|+.|||+++|++++.||+++++.+...| .+|||+|||
T Consensus       370 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGD  448 (567)
T PRK06178        370 TFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGD  448 (567)
T ss_pred             eeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCCceeecc
Confidence            43221   1    123467899999999999998889999999999999999999999999999998888 588999999


Q ss_pred             eEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHH
Q 012526          325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  400 (461)
Q Consensus       325 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~  400 (461)
                      ++++++          +|.++++||.+|+|+. +|++|+|.+||+++.++|+|.+++|++.+++    .+.+++++.++ 
T Consensus       449 l~~~~~----------~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-  516 (567)
T PRK06178        449 IGKIDE----------QGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPG-  516 (567)
T ss_pred             eEEEec----------CCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCC-
Confidence            999998          8999999999999997 8999999999999999999999999997653    46677777532 


Q ss_pred             HHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          401 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                     ...+.++++++++++++.++     .+ .+.++++.|.+.+||+.
T Consensus       517 ---------------~~~~~~~l~~~~~~~l~~~~-----~p-~i~~v~~iP~t~~GKv~  555 (567)
T PRK06178        517 ---------------ADLTAAALQAWCRENMAVYK-----VP-EIRIVDALPMTATGKVR  555 (567)
T ss_pred             ---------------CcCCHHHHHHHHHhcCcccC-----Cc-eEEEeccCCCCCcccee
Confidence                           23567889999999988876     33 48889999999999974

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=3e-41  Score=384.06  Aligned_cols=323  Identities=23%  Similarity=0.332  Sum_probs=265.7

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEcc--
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTA--   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~--   98 (461)
                      ..++|+++++|||||||.||+|++||+++..++......++++++|++++.+|++|.+++.. .+.++..|.++++.+  
T Consensus       790 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~  869 (1140)
T PRK06814        790 RDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSP  869 (1140)
T ss_pred             CCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCc
Confidence            57799999999999999999999999999998888888889999999999999999999854 556788999988743  


Q ss_pred             --hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           99 --VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        99 --~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                        ...+.+.++++++|++.++|+++..+.+....                                              
T Consensus       870 ~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~----------------------------------------------  903 (1140)
T PRK06814        870 LHYRIIPELIYDTNATILFGTDTFLNGYARYAHP----------------------------------------------  903 (1140)
T ss_pred             ccHHHHHHHHHhcCCEEEEecHHHHHHHHhhccc----------------------------------------------
Confidence              35678899999999999999998776542100                                              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceeccC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~~~  255 (461)
                                                     ..+.++|.+++||+++++++ +.+.+.++.++++.||+||++..+..+.
T Consensus       904 -------------------------------~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  952 (1140)
T PRK06814        904 -------------------------------YDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNT  952 (1140)
T ss_pred             -------------------------------ccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecC
Confidence                                           12334589999999999887 4556668999999999999988776655


Q ss_pred             CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCC
Q 012526          256 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  335 (461)
Q Consensus       256 ~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~  335 (461)
                      +.....+++|+|.+++++++.+.+     +.|+.|||+++|++++.||+++++.......++|||+|||+|++++     
T Consensus       953 ~~~~~~~~vG~p~~g~~~~~~~~~-----~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~----- 1022 (1140)
T PRK06814        953 PMHNKAGTVGRLLPGIEYRLEPVP-----GIDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDE----- 1022 (1140)
T ss_pred             CCCCCCCcCCccCCCCeEEEeecC-----CCCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECC-----
Confidence            444567899999999999998743     1367899999999999999987654332223589999999999998     


Q ss_pred             cccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeE---EEEEcChHHHHHHHHHcCCCc
Q 012526          336 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG---AIIVPDKEEVLMAAKRLSIVH  412 (461)
Q Consensus       336 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~---a~vv~~~~~~~~~~~~~~~~~  412 (461)
                           ||.+++.||.||+|++ +|++|+|.|||+++.+|+.|.+++|++.+++..+   +.++..               
T Consensus      1023 -----dG~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~--------------- 1081 (1140)
T PRK06814       1023 -----EGFITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTA--------------- 1081 (1140)
T ss_pred             -----CCeEEEEecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcC---------------
Confidence                 8999999999999997 8999999999999999999999999998765433   122221               


Q ss_pred             CCccccCcHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          413 ADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       413 ~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                         .+.+.+++.++++++ ++.|+     .+++|.++++.|.+.|||+.
T Consensus      1082 ---~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~ 1122 (1140)
T PRK06814       1082 ---SDATRAAFLAHAKAAGASELM-----VPAEIITIDEIPLLGTGKID 1122 (1140)
T ss_pred             ---CCcCHHHHHHHHHHcCCCccc-----CCcEEEEecCcCCCCCCCCc
Confidence               234567888888864 77776     66789999999999999985

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.6e-41  Score=353.76  Aligned_cols=329  Identities=27%  Similarity=0.415  Sum_probs=265.5

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHH-H-HHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLL-H-QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~-~-~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      ...++++++++|||||||.||+|++||++++ + ........+++.++|+++...|++|.+++...+.++..|+++++. 
T Consensus       173 ~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~  252 (542)
T PRK06018        173 TFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPG  252 (542)
T ss_pred             cCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccC
Confidence            4466789999999999999999999999743 2 223344567788999999999999999988777788899998874 


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|+++..+........                                          
T Consensus       253 ~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------------------  290 (542)
T PRK06018        253 AKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG------------------------------------------  290 (542)
T ss_pred             cCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC------------------------------------------
Confidence               46788999999999999999999988876432211                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceecc
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                       ..+..+|.+++||+++++++.+.++.++.++++.||+||++.+++..
T Consensus       291 ---------------------------------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  337 (542)
T PRK06018        291 ---------------------------------LKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLA  337 (542)
T ss_pred             ---------------------------------CCcccceEEEEcCCCCCHHHHHHHHHhCCCeEeeecccccCcccccc
Confidence                                             11223489999999999887444434899999999999998765543


Q ss_pred             CCCC-----------CCccccccCCCCeEEEEEeCCCCCcCCCC--CceEEEEecCCccccccCCchhhccccCCCCccc
Q 012526          255 RPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN  321 (461)
Q Consensus       255 ~~~~-----------~~~~~~G~~~~~~~i~i~d~~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~  321 (461)
                      ....           ....++|+|.++++++++|+ +++.++.+  ..|||+++|++++.||+++   +...++.++||+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~-~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~  413 (542)
T PRK06018        338 ALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD-AGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFD  413 (542)
T ss_pred             cCccccccCCchhhhhccccCCCCCCCcEEEEECC-CCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEE
Confidence            2110           11356899999999999995 56666653  5799999999999999984   234455689999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcC
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  397 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~  397 (461)
                      |||++++++          +|.+++.||.+|+|+. +|++|++.+||+++.+||+|.+|+|++.+++    ...++|++.
T Consensus       414 TGDl~~~~~----------~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  482 (542)
T PRK06018        414 TGDVATIDA----------YGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLK  482 (542)
T ss_pred             cCCEEEEcC----------CccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeC
Confidence            999999998          8999999999999996 8999999999999999999999999998654    455666654


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++                ...+.+++.++++++++.|.     .+.+|.++++.|.+.+||+.
T Consensus       483 ~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKi~  524 (542)
T PRK06018        483 PG----------------ETATREEILKYMDGKIAKWW-----MPDDVAFVDAIPHTATGKIL  524 (542)
T ss_pred             CC----------------CCCCHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCcchhh
Confidence            32                34566889999999998875     67889999999999999973

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=8.4e-41  Score=348.15  Aligned_cols=335  Identities=22%  Similarity=0.281  Sum_probs=271.6

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---   97 (461)
                      ...++++++++|||||||.||+|.++|+++...+......+++..++++++..|++|..++...+.++..|+++++.   
T Consensus       139 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~  218 (503)
T PRK04813        139 AVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKD  218 (503)
T ss_pred             cCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChh
Confidence            45678899999999999999999999999998888877888899999999999999999987777789999998874   


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.+++++++.+.++|+++..+.......                                           
T Consensus       219 ~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-------------------------------------------  255 (503)
T PRK04813        219 MTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN-------------------------------------------  255 (503)
T ss_pred             hhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC-------------------------------------------
Confidence               4677899999999999999999987654321100                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCcccee
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~  252 (461)
                                                      ...+..++.++++|+++++.+ +.+.+.+ +..+++.||+||++..++
T Consensus       256 --------------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  303 (503)
T PRK04813        256 --------------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVT  303 (503)
T ss_pred             --------------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEE
Confidence                                            022344589999999998876 5566667 789999999999976544


Q ss_pred             ccCC-----CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC---CCcccCCc
Q 012526          253 ARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWLNTGD  324 (461)
Q Consensus       253 ~~~~-----~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~---~~~~~TGD  324 (461)
                      ....     ......++|++.++++++|+| +++.+++.|+.|||+++++.++.||+++++.+...|..   .+||+|||
T Consensus       304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD  382 (503)
T PRK04813        304 SIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGD  382 (503)
T ss_pred             EEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCc
Confidence            3211     113345789999999999999 56788899999999999999999999999999887732   35999999


Q ss_pred             eEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHH
Q 012526          325 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE  400 (461)
Q Consensus       325 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~  400 (461)
                      +|++ +          +|.+++.||.+|+|+. +|++|++.+||+++.++|+|.+++|++.++    +.+.+++++.++.
T Consensus       383 ~~~~-~----------~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  450 (503)
T PRK04813        383 AGYL-E----------DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEED  450 (503)
T ss_pred             eEEe-e----------CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccc
Confidence            9999 7          8999999999999997 899999999999999999999999998643    4577777775421


Q ss_pred             HHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          401 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      .            +....-.++++++++++++.+.     .+++|.++++.|...|||+.
T Consensus       451 ~------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~gKv~  493 (503)
T PRK04813        451 F------------EREFELTKAIKKELKERLMEYM-----IPRKFIYRDSLPLTPNGKID  493 (503)
T ss_pred             c------------cccchhHHHHHHHHHhhCcccc-----CCeEEEEeccCCCCCCCCCc
Confidence            0            0001112456777777676665     77899999999999999984

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.6e-40  Score=339.98  Aligned_cols=320  Identities=26%  Similarity=0.366  Sum_probs=268.5

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcc-h
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-V   99 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~   99 (461)
                      ....+++++++|||||||.||+|+++|+++...+......+++.++|++++.+|++|.+++...+.++..|+++++.+ .
T Consensus       107 ~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~  186 (436)
T TIGR01923       107 SFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF  186 (436)
T ss_pred             cCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH
Confidence            346689999999999999999999999999998888888899999999999999999999877777899999998864 4


Q ss_pred             hhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHH
Q 012526          100 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  179 (461)
Q Consensus       100 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (461)
                      ..+++.++++++|++.++|+++..+.+....                                                 
T Consensus       187 ~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~-------------------------------------------------  217 (436)
T TIGR01923       187 NQLLEMIANERVTHISLVPTQLNRLLDEGGH-------------------------------------------------  217 (436)
T ss_pred             HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC-------------------------------------------------
Confidence            5889999999999999999999877652110                                                 


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCCCC-
Q 012526          180 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-  258 (461)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-  258 (461)
                                                    ...+|.+++||+++++.+.+....++..+++.||+||++...+...... 
T Consensus       218 ------------------------------~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  267 (436)
T TIGR01923       218 ------------------------------NENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEML  267 (436)
T ss_pred             ------------------------------CCceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCcccc
Confidence                                          0224889999999999886666667999999999999987655433222 


Q ss_pred             CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCccc
Q 012526          259 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  338 (461)
Q Consensus       259 ~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~  338 (461)
                      ....++|.+++++++++...+.      ++.|||+++++.++.||+++++.+...+ .++||+|||++++++        
T Consensus       268 ~~~~~~G~~~~~~~~~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~--------  332 (436)
T TIGR01923       268 HARPDVGRPLAGREIKIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDG--------  332 (436)
T ss_pred             ccccCCCccCCCcEEEEEeCCC------CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcC--------
Confidence            2223489999999999844222      2689999999999999999888776655 579999999999998        


Q ss_pred             ccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCcCC
Q 012526          339 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  414 (461)
Q Consensus       339 ~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  414 (461)
                        +|.+++.||.+|+++. +|++|++.+||++|.++|.|.+++|++.+++    .+.++++..+                
T Consensus       333 --dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~----------------  393 (436)
T TIGR01923       333 --EGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES----------------  393 (436)
T ss_pred             --CCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC----------------
Confidence              8999999999999997 8999999999999999999999999998654    4556666542                


Q ss_pred             ccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          415 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       415 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                        ..+.+++.+++++.|+.++     .+.+|.++++.|.+.+||+.
T Consensus       394 --~~~~~~l~~~l~~~l~~~~-----~p~~i~~~~~iP~t~~GK~~  432 (436)
T TIGR01923       394 --DISQAKLIAYLTEKLAKYK-----VPIAFEKLDELPYNASGKIL  432 (436)
T ss_pred             --CCCHHHHHHHHHHhhhCCC-----CCeEEEEecCCCCCCCCcee
Confidence              2456789999999998886     56789999999999999974

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-40  Score=351.68  Aligned_cols=329  Identities=27%  Similarity=0.453  Sum_probs=267.0

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC---CCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP---AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~   97 (461)
                      ..++++++++|||||||.||+|.++|+++..++......+.   ...++.++..+|++|.+++.. .+..+..|+++++.
T Consensus       203 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~  282 (560)
T PRK08974        203 LVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLI  282 (560)
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEe
Confidence            46789999999999999999999999999877655433332   344678889999999998765 44557788776653


Q ss_pred             ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                          ++..++..++++++|.+.++|+++..+.......                                          
T Consensus       283 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------------------  320 (560)
T PRK08974        283 TNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQ------------------------------------------  320 (560)
T ss_pred             cCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcc------------------------------------------
Confidence                4667889999999999999999998886521100                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                       ...+..+|.+++||+++++.+ ..+.+.+|..+++.||+||++..++
T Consensus       321 ---------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~  367 (560)
T PRK08974        321 ---------------------------------ELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVS  367 (560)
T ss_pred             ---------------------------------cCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceee
Confidence                                             011233488999999999887 4455557999999999999988766


Q ss_pred             ccCCCC-CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          253 ARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       253 ~~~~~~-~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      .+.... ...+++|.|++++.++++|+ ++.+++.|+.|||+++|+.++.||+++++.+...| .+|||+|||++++++ 
T Consensus       368 ~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~-  444 (560)
T PRK08974        368 VNPYDLDYYSGSIGLPVPSTEIKLVDD-DGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE-  444 (560)
T ss_pred             ccCCCCcccCCccccCcCCCEEEEECC-CCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC-
Confidence            554322 34578999999999999995 57889999999999999999999999999998888 689999999999988 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.++++||.+|+|++ +|.+|+|.+||++|.+||.|.+++|++.+++.    +.++++...         
T Consensus       445 ---------~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~---------  505 (560)
T PRK08974        445 ---------EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD---------  505 (560)
T ss_pred             ---------CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC---------
Confidence                     8999999999999997 79999999999999999999999999986643    334444321         


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              .....++++++++++|+.|.     .+.++.++++.|.+.+||+.
T Consensus       506 --------~~~~~~~l~~~l~~~l~~~~-----~P~~~~~~~~lP~t~~GK~~  545 (560)
T PRK08974        506 --------PSLTEEELITHCRRHLTGYK-----VPKLVEFRDELPKSNVGKIL  545 (560)
T ss_pred             --------CCCCHHHHHHHHHhhccccc-----CCcEEEEhhhCCCCCCCcEe
Confidence                    23456789999999998876     66789999999999999974

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-41  Score=357.48  Aligned_cols=328  Identities=23%  Similarity=0.301  Sum_probs=255.2

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhh-hhccCeEEEEc-
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~-~l~~G~~~~~~-   97 (461)
                      ....++++++++|||||||.||+|++||+++..++..+...+++.++|++++.+|++|.+++...+. ++..|+++++. 
T Consensus       194 ~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  273 (600)
T PRK08279        194 SGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR  273 (600)
T ss_pred             cCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC
Confidence            3346789999999999999999999999999999988888899999999999999999999887655 47788888874 


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.++++++|++.++|++++.+........                                           
T Consensus       274 ~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~-------------------------------------------  310 (600)
T PRK08279        274 KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT-------------------------------------------  310 (600)
T ss_pred             CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc-------------------------------------------
Confidence              57889999999999999999999877764211000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCC-eeeeecccCCCccceec
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAA  253 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~-~v~~~YG~tE~~~~~~~  253 (461)
                                                      ....+++.  ++|+.+++.+ +++.+.++. .+++.||+||++.....
T Consensus       311 --------------------------------~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~  356 (600)
T PRK08279        311 --------------------------------DRDHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFIN  356 (600)
T ss_pred             --------------------------------ccCcceeE--EecCCCCHHHHHHHHHHhCcceeeeeecccccceeecc
Confidence                                            01112243  3456676654 677777865 59999999998754332


Q ss_pred             cCCCCCCccccccCCC----CeEEEEEeCCCC----------CcCCCCCceEEE--EecCCccccccCCchhhccccC--
Q 012526          254 RRPTCNVLGSVGHPIN----HTEIKIVDAETN----------EVLPAGSKGIVK--VRGSQVMQGYFKNPSATKQALD--  315 (461)
Q Consensus       254 ~~~~~~~~~~~G~~~~----~~~i~i~d~~~~----------~~~~~g~~Gel~--v~~~~~~~gy~~~~~~~~~~f~--  315 (461)
                      .   ....+++|.+.+    +..+...+.+.+          ..+++|+.||++  +.++.++.|| +++..+...|.  
T Consensus       357 ~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~  432 (600)
T PRK08279        357 V---FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRD  432 (600)
T ss_pred             c---CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhc
Confidence            1   223456676555    333322221111          357889999998  7789999999 88888877652  


Q ss_pred             ----CCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC---
Q 012526          316 ----EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR---  388 (461)
Q Consensus       316 ----~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~---  388 (461)
                          .++||+|||+|++++          +|.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++   
T Consensus       433 ~~~~~~~~~~TGDlg~~~~----------dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~  501 (600)
T PRK08279        433 VFKKGDAWFNTGDLMRDDG----------FGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTD  501 (600)
T ss_pred             ccCCCCceEeecceEEEcC----------CccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCC
Confidence                358999999999998          8999999999999997 8999999999999999999999999987532   


Q ss_pred             --eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          389 --RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       389 --~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                        ...++++...+                ...+.++++++++++|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       502 ~~~~~~~vv~~~~----------------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  554 (600)
T PRK08279        502 GRAGMAAIVLADG----------------AEFDLAALAAHLYERLPAYA-----VPLFVRLVPELETTGTFKYR  554 (600)
T ss_pred             CccceeEEEecCC----------------ccCCHHHHHHHHHhhCcccc-----CCeEEEeecCCCCCcchhhh
Confidence              23344544321                34567899999999999998     66789999999999999974

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.1e-40  Score=352.85  Aligned_cols=334  Identities=22%  Similarity=0.331  Sum_probs=260.7

Q ss_pred             CCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhh-hhccCeEEEE--cchh
Q 012526           24 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMY--TAVR  100 (461)
Q Consensus        24 ~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~-~l~~G~~~~~--~~~~  100 (461)
                      .+++++++|||||||.||+|.+||+++..........+++..++++++.+|++|++++...+. .+..|..+++  +++.
T Consensus       194 ~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~  273 (567)
T PLN02479        194 EWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAK  273 (567)
T ss_pred             cccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHH
Confidence            346788999999999999999999998766655556677889999999999999999765543 3566666655  3688


Q ss_pred             hHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHHH
Q 012526          101 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  180 (461)
Q Consensus       101 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (461)
                      .+++.++++++|++.++|+++..+.+......                                                
T Consensus       274 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------------  305 (567)
T PLN02479        274 AIYSAIANYGVTHFCAAPVVLNTIVNAPKSET------------------------------------------------  305 (567)
T ss_pred             HHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc------------------------------------------------
Confidence            99999999999999999999988865321100                                                


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccC-----
Q 012526          181 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR-----  255 (461)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-----  255 (461)
                                                ...+..++.++++|+++++.+.+.++..+.++++.||+||+++.+....     
T Consensus       306 --------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~  359 (567)
T PLN02479        306 --------------------------ILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEW  359 (567)
T ss_pred             --------------------------cccccceeEEEEcCCCCCHHHHHHHHhcCCceecccccccccccccceeccccc
Confidence                                      0112334778999999988875555556889999999999865433221     


Q ss_pred             ----CCC--CCccccccCCCCeE-EEEEeCCCCCcCCCC--CceEEEEecCCccccccCCchhhccccCCCCcccCCceE
Q 012526          256 ----PTC--NVLGSVGHPINHTE-IKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG  326 (461)
Q Consensus       256 ----~~~--~~~~~~G~~~~~~~-i~i~d~~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg  326 (461)
                          ...  ....+.|.+.++.. ++++|++++.+++.+  +.|||+++|++++.||+++|+.+.+.| .++||+|||+|
T Consensus       360 ~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~  438 (567)
T PLN02479        360 DSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLG  438 (567)
T ss_pred             cccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchh-cCCceecceeE
Confidence                000  01135677888775 888987778888754  679999999999999999999999998 48999999999


Q ss_pred             eeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHH
Q 012526          327 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  402 (461)
Q Consensus       327 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~  402 (461)
                      ++++          +|.+++.||.||+|+. +|++|+|.+||.+|.+||.|.+++|++.+++    .+.+++++.++.. 
T Consensus       439 ~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-  506 (567)
T PLN02479        439 VKHP----------DGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVD-  506 (567)
T ss_pred             EEcC----------CccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccc-
Confidence            9998          8999999999999997 8999999999999999999999999998653    5778888764310 


Q ss_pred             HHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          403 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                .+......+++.++++++|+.|+     .|+.+.+ .+.|.+.+||+.
T Consensus       507 ----------~~~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~-~~iP~t~~gKv~  548 (567)
T PLN02479        507 ----------KSDEAALAEDIMKFCRERLPAYW-----VPKSVVF-GPLPKTATGKIQ  548 (567)
T ss_pred             ----------ccchhhhHHHHHHHHHhhccccc-----CCceEEe-ccCCCCCccCee
Confidence                      00012345678888888888887     5555655 568889999973

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-40  Score=352.26  Aligned_cols=334  Identities=24%  Similarity=0.365  Sum_probs=258.5

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh-hcCCCCCcEEEEECChhhhHHHhhhh-hhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~~~~~~~-~~l~~G~~~~~~   97 (461)
                      ....++++++++|||||||.||+|+++|++++..+..... .+++.++|++++++|++|.+++...+ .++..|+++++.
T Consensus       171 ~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~  250 (579)
T PRK09192        171 PRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL  250 (579)
T ss_pred             CCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEee
Confidence            3456789999999999999999999999999988887776 78899999999999999999987544 457788887653


Q ss_pred             -------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           98 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        98 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                             ++..+++.+.+++++++...|..+..+.........                                     
T Consensus       251 ~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~-------------------------------------  293 (579)
T PRK09192        251 PTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDL-------------------------------------  293 (579)
T ss_pred             CHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccc-------------------------------------
Confidence                   366788999999998776644444333221100000                                     


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC------Ceeeeecc
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG------VKVQVGYG  243 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~------~~v~~~YG  243 (461)
                                                         ....+..+|.+++||+++++.+ ..+.+.++      ..+++.||
T Consensus       294 -----------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG  338 (579)
T PRK09192        294 -----------------------------------AELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYG  338 (579)
T ss_pred             -----------------------------------cccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccc
Confidence                                               0012233488999999999876 44444442      24899999


Q ss_pred             cCCCccceeccCCCC----------------------------CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEe
Q 012526          244 LTESSPVIAARRPTC----------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR  295 (461)
Q Consensus       244 ~tE~~~~~~~~~~~~----------------------------~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~  295 (461)
                      +||++..++......                            ...+++|.+.++++++++|+ ++..++.|+.|||+++
T Consensus       339 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~-~~~~~~~g~~Gel~i~  417 (579)
T PRK09192        339 LAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNE-AGMPLPERVVGHICVR  417 (579)
T ss_pred             cccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECC-CCCCCCCCCEEEEEec
Confidence            999976655432211                            11247899999999999994 5788899999999999


Q ss_pred             cCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCc
Q 012526          296 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  375 (461)
Q Consensus       296 ~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p  375 (461)
                      |+.++.||+++ ..+...+..++||+|||+|++ +          +|+++++||.||+|++ +|++|+|.|||++|.+||
T Consensus       418 g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~----------~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p  484 (579)
T PRK09192        418 GPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-L----------DGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEP  484 (579)
T ss_pred             CCchhhhhcCC-ccccccccCCceeeccceeeE-E----------CCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcC
Confidence            99999999999 667777778999999999998 6          7999999999999997 899999999999999999


Q ss_pred             ccc--EEEEEeCCCC---eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHH-HhccCCCccccEEEec
Q 012526          376 LIR--QIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVD  449 (461)
Q Consensus       376 ~V~--~a~V~~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~  449 (461)
                      +|.  +++|++.+++   .+.++++....                ...+.+++++++++.+.. ++     .+..+.+++
T Consensus       485 ~V~~~~~~v~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~~-----~~~~i~~~~  543 (579)
T PRK09192        485 ELRSGDAAAFSIAQENGEKIVLLVQCRIS----------------DEERRGQLIHALAALVRSEFG-----VEAAVELVP  543 (579)
T ss_pred             CccCCcEEEEEeccCCCeeEEEEEEecCC----------------ChHHHHHHHHHHHHHHHHHhC-----CCceEEEeC
Confidence            998  8999987654   45566655321                234567899999998864 54     445677775


Q ss_pred             --CCCCCCCCccc
Q 012526          450 --EPFTVNFLCLA  460 (461)
Q Consensus       450 --~~~~~~~g~~~  460 (461)
                        +.|.+.+||+.
T Consensus       544 ~~~lP~t~~GKv~  556 (579)
T PRK09192        544 PHSLPRTSSGKLS  556 (579)
T ss_pred             CCCcCCCCCcchh
Confidence              78889999973

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-40  Score=347.20  Aligned_cols=334  Identities=22%  Similarity=0.310  Sum_probs=267.1

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHH------HHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI------RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY   96 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~------~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~   96 (461)
                      ...+.++++|||||||.||+|+++|.++....      ...........++++++.+|++|.+++...+.++..|+++++
T Consensus       138 ~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~  217 (502)
T PRK08276        138 DETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVV  217 (502)
T ss_pred             CCCcceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEE
Confidence            44678999999999999999999987754321      222222333577899999999999998887778899999887


Q ss_pred             c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      .   ++..+++.++++++|++.++|+++..+.........                                        
T Consensus       218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------------------------  257 (502)
T PRK08276        218 MEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRA----------------------------------------  257 (502)
T ss_pred             cCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCC----------------------------------------
Confidence            5   588899999999999999999999888653211000                                        


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HHHHhCCeeeeecccCCCcccee
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                       ...+.++|.+++||++++.++.+ +.+.++..+++.||+||++.++.
T Consensus       258 ---------------------------------~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  304 (502)
T PRK08276        258 ---------------------------------RYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTV  304 (502)
T ss_pred             ---------------------------------CCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeE
Confidence                                             01233459999999999998844 44556888999999999988655


Q ss_pred             ccCCC-CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          253 ARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       253 ~~~~~-~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      ..... ....+++|.|+ +++++++| +++.+++.|+.|||+++|+.++.||+++++.+...+.+++||+|||++++++ 
T Consensus       305 ~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~-  381 (502)
T PRK08276        305 ITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE-  381 (502)
T ss_pred             ecCccccccCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcC-
Confidence            44332 24457899999 88999999 4578899999999999999999999999999999997779999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~  407 (461)
                               +|.+++.||.||+++. +|++|++.+||.+|.++|+|.+++|++..++    .+.+++++.+..       
T Consensus       382 ---------~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-------  444 (502)
T PRK08276        382 ---------DGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGA-------  444 (502)
T ss_pred             ---------CcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCC-------
Confidence                     8999999999999997 8999999999999999999999999988654    577888875420       


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                            .......++++++++++|+.++     .+..+.++++.|.+.+||+.
T Consensus       445 ------~~~~~~~~~i~~~~~~~l~~~~-----~p~~i~~~~~lP~t~~GKi~  486 (502)
T PRK08276        445 ------DAGDALAAELIAWLRGRLAHYK-----CPRSIDFEDELPRTPTGKLY  486 (502)
T ss_pred             ------CCChhhHHHHHHHHHhhccCCC-----CCcEEEEecCCCCCcccchh
Confidence                  0011123467777777776665     67889999999999999973

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-40  Score=345.01  Aligned_cols=331  Identities=20%  Similarity=0.263  Sum_probs=265.9

Q ss_pred             CCeEEEEecCCCCCCchhhee--chHHHHH---HHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           25 DDIATYVYTSGTTGNPKGVML--THKNLLH---QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        25 ~~~a~i~~TSGTTG~PK~v~~--sh~~l~~---~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      .+.++++|||||||.||+|.+  +|.++..   ........+++.+++++++.+|++|.+++...+.++..|+++++.  
T Consensus       154 ~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~  233 (511)
T PRK13391        154 SLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEH  233 (511)
T ss_pred             ccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCC
Confidence            457899999999999999995  4665532   233345567788899999999999999988777788889988884  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++|++.++|+++..+.+......                                            
T Consensus       234 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------------------------------  269 (511)
T PRK13391        234 FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR--------------------------------------------  269 (511)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc--------------------------------------------
Confidence             67899999999999999999999887764211100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHH-HHHHHhCCeeeeecccCCCccceeccC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARR  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~-~~~~~~~~~v~~~YG~tE~~~~~~~~~  255 (461)
                                                   ....+.+++.+++||+++++.+. .+.+.++..+++.||+||++.++....
T Consensus       270 -----------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~  320 (511)
T PRK13391        270 -----------------------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDS  320 (511)
T ss_pred             -----------------------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecC
Confidence                                         00123345899999999998874 444557889999999999987655433


Q ss_pred             CC-CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCC-CcccCCceEeeccCCC
Q 012526          256 PT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-GWLNTGDIGWIAPHHS  333 (461)
Q Consensus       256 ~~-~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~-~~~~TGDlg~~~~~~~  333 (461)
                      .. ....+++|+|.++ .++++| +++++++.|+.|||+++++ ++.||+++++.+...|..+ +||+|||+|++++   
T Consensus       321 ~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~---  394 (511)
T PRK13391        321 EEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDE---  394 (511)
T ss_pred             ccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECC---
Confidence            22 2445789999999 589998 5688889999999999999 8889999999998888654 9999999999998   


Q ss_pred             CCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcC
Q 012526          334 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  409 (461)
Q Consensus       334 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~  409 (461)
                             +|.+++.||.||+++. +|++|++.+||+++.+||.|.+++|++.+++    .+.+++++.++          
T Consensus       395 -------~g~l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~----------  456 (511)
T PRK13391        395 -------DGYLYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDG----------  456 (511)
T ss_pred             -------CccEEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCC----------
Confidence                   8999999999999996 8999999999999999999999999988654    35566665432          


Q ss_pred             CCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          410 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       410 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                         ........++++++++++++.|+     .++.|.++++.|.+.|||+.
T Consensus       457 ---~~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~gKv~  499 (511)
T PRK13391        457 ---VDPGPALAAELIAFCRQRLSRQK-----CPRSIDFEDELPRLPTGKLY  499 (511)
T ss_pred             ---CCcccchHHHHHHHHHhhcccCc-----CCcEEEEeecCCCCCcccee
Confidence               00112235788899998888886     67799999999999999974

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-39  Score=343.78  Aligned_cols=328  Identities=24%  Similarity=0.342  Sum_probs=256.3

Q ss_pred             CCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhh-hccCeEEEE--cchh
Q 012526           24 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY--TAVR  100 (461)
Q Consensus        24 ~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~-l~~G~~~~~--~~~~  100 (461)
                      ..++++++|||||||.||+|+++|+++..++......+++..++++++.+|++|.+++...+.. +..|..++.  +++.
T Consensus       181 ~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~  260 (545)
T PRK08162        181 EWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPK  260 (545)
T ss_pred             CCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCHH
Confidence            3578999999999999999999999887666555556678888999999999999988665444 444444444  3688


Q ss_pred             hHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHHH
Q 012526          101 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  180 (461)
Q Consensus       101 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (461)
                      .+++.++++++|++.++|+++..|++......                                                
T Consensus       261 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------------  292 (545)
T PRK08162        261 LIFDLIREHGVTHYCGAPIVLSALINAPAEWR------------------------------------------------  292 (545)
T ss_pred             HHHHHHHHcCCeEEEechHHHHHHHhCccccc------------------------------------------------
Confidence            99999999999999999999998875311100                                                


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCCCC--
Q 012526          181 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC--  258 (461)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--  258 (461)
                                                 ..+...+.++++|+.+++.+.+..+.++.++++.||+||+++.+..+....  
T Consensus       293 ---------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  345 (545)
T PRK08162        293 ---------------------------AGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEW  345 (545)
T ss_pred             ---------------------------cCCccceEEEECCCCCCHHHHHHHHHhCCceeecccccccCcceeeccccccc
Confidence                                       011122556788888888876666667999999999999865444322110  


Q ss_pred             ---------CCccccccCCC-CeEEEEEeCCCCCcCCC-C-CceEEEEecCCccccccCCchhhccccCCCCcccCCceE
Q 012526          259 ---------NVLGSVGHPIN-HTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG  326 (461)
Q Consensus       259 ---------~~~~~~G~~~~-~~~i~i~d~~~~~~~~~-g-~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg  326 (461)
                               ...++.|.+.+ +..++++|++++.+++. | +.|||+++|+.++.||+++++.+...| .++||+|||+|
T Consensus       346 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~  424 (545)
T PRK08162        346 DALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLA  424 (545)
T ss_pred             ccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceE
Confidence                     11234566554 34578889777888876 3 469999999999999999999999988 57999999999


Q ss_pred             eeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHH
Q 012526          327 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  402 (461)
Q Consensus       327 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~  402 (461)
                      ++++          +|.+++.||.||+++. +|++|+|.+||+.|.+||+|.+++|++.+++    .+.+++++.++   
T Consensus       425 ~~d~----------dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~---  490 (545)
T PRK08162        425 VLHP----------DGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDG---  490 (545)
T ss_pred             EEcC----------CccEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCC---
Confidence            9998          8999999999999996 8999999999999999999999999987643    46677776532   


Q ss_pred             HHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          403 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                   ...+.++++++++++|+.|.     .++.+.+ .+.|...|||+.
T Consensus       491 -------------~~~~~~~l~~~~~~~l~~~~-----~P~~~~~-~~iP~t~~gK~~  529 (545)
T PRK08162        491 -------------ASATEEEIIAHCREHLAGFK-----VPKAVVF-GELPKTSTGKIQ  529 (545)
T ss_pred             -------------CCCCHHHHHHHHHHhccccc-----CCcEEEe-cccCCCCCcCCc
Confidence                         23467899999999999887     4455654 578889999974

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-39  Score=328.08  Aligned_cols=298  Identities=20%  Similarity=0.238  Sum_probs=247.9

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc---
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~---   97 (461)
                      ..++++++++|||||||.||+|.+||+++.+++..+...+++..+|+.+..+|++|.+++.. .+.++..|+++++.   
T Consensus        98 ~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~  177 (414)
T PRK08308         98 YLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNK  177 (414)
T ss_pred             CCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCC
Confidence            46789999999999999999999999999998888888888899999999999999999865 55668899988874   


Q ss_pred             chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHH
Q 012526           98 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  177 (461)
Q Consensus        98 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (461)
                      ++..+++.+++++++++.++|+.+..+.+....                                               
T Consensus       178 ~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------------------------  210 (414)
T PRK08308        178 NPKFALNILRNTPQHILYAVPLMLHILGRLLPG-----------------------------------------------  210 (414)
T ss_pred             CHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc-----------------------------------------------
Confidence            578899999999999999999999887652110                                               


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCCC
Q 012526          178 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT  257 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  257 (461)
                                                     . ..++.+++||+++++.+.+.++..+.++++.||+||++.+....  .
T Consensus       211 -------------------------------~-~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~--~  256 (414)
T PRK08308        211 -------------------------------T-FQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICP--D  256 (414)
T ss_pred             -------------------------------c-ccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecC--C
Confidence                                           0 01267889999999887555555567899999999998654422  2


Q ss_pred             CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcc
Q 012526          258 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  337 (461)
Q Consensus       258 ~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~  337 (461)
                      ...++++|+|.+++++++.+.       .++.||+++++                   .++||+|||+|++++       
T Consensus       257 ~~~~~~~G~p~~~~~~~~~~~-------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~-------  303 (414)
T PRK08308        257 MKSHLDLGNPLPHVSVSAGSD-------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSE-------  303 (414)
T ss_pred             CCCCCccCccCCCeEEEEecC-------CCCCceEEEEc-------------------CCceEECCceEEECC-------
Confidence            234578999999999998752       35679999974                   267999999999998       


Q ss_pred             cccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCcC
Q 012526          338 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  413 (461)
Q Consensus       338 ~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  413 (461)
                         +|.++++||.||+|++ +|++|+|.+||+++.++|+|.+|+|++.+++    .+.++++.+                
T Consensus       304 ---dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~----------------  363 (414)
T PRK08308        304 ---RGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISH----------------  363 (414)
T ss_pred             ---CccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeC----------------
Confidence               8999999999999997 8999999999999999999999999998765    345666653                


Q ss_pred             CccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          414 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       414 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                        ...+.++++++++++|+.|+     .+.++.++++.|.+.+||+.
T Consensus       364 --~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~iP~t~~GKi~  403 (414)
T PRK08308        364 --EEIDPVQLREWCIQHLAPYQ-----VPHEIESVTEIPKNANGKVS  403 (414)
T ss_pred             --CCCCHHHHHHHHHHhCcccc-----CCcEEEEeccCCCCCCcCee
Confidence              23567889999999999887     56789999999999999974

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-38  Score=335.10  Aligned_cols=339  Identities=23%  Similarity=0.335  Sum_probs=256.3

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCC-cEEEEECChhhhHHHhhhh-hhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG-DKFLSMLPPWHVYERACGY-FIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~-d~~~~~~p~~~~~~~~~~~-~~l~~G~~~~~~   97 (461)
                      ....++++++++|||||||.||+|+++|+++...+..+...+++.++ |++++.+|++|.+++...+ .++..|++++..
T Consensus       147 ~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~  226 (545)
T PRK07768        147 VETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKV  226 (545)
T ss_pred             CCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEe
Confidence            34567899999999999999999999999999888887777888876 8999999999999987644 458889988775


Q ss_pred             -------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           98 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        98 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                             ++..+++.+++++++++.+.|..+..+.....+....                                    
T Consensus       227 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------------------  270 (545)
T PRK07768        227 TPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP------------------------------------  270 (545)
T ss_pred             CHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc------------------------------------
Confidence                   3556788999999999877777776655432111000                                    


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHH-HHH---hCC---eeeeecc
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEA---IGV---KVQVGYG  243 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~-~~~---~~~---~v~~~YG  243 (461)
                                                         -...+..+|.+++||+++++...+. .+.   ++.   .+++.||
T Consensus       271 -----------------------------------~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG  315 (545)
T PRK07768        271 -----------------------------------GAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYG  315 (545)
T ss_pred             -----------------------------------cCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence                                               0012234589999999998887444 332   454   4999999


Q ss_pred             cCCCccceeccCCC--------------------------CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecC
Q 012526          244 LTESSPVIAARRPT--------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS  297 (461)
Q Consensus       244 ~tE~~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~  297 (461)
                      +||++..++.....                          ...++++|+|.++++++++| ++++++++|+.|||+++|+
T Consensus       316 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~  394 (545)
T PRK07768        316 MAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGE  394 (545)
T ss_pred             ccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccC
Confidence            99998765433221                          12345789999999999999 5678899999999999999


Q ss_pred             CccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccc
Q 012526          298 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLI  377 (461)
Q Consensus       298 ~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V  377 (461)
                      .++.||++++... ..+..++||+|||++++++          +|.++++||.||+|++ +|++|++.+||++|.+||+|
T Consensus       395 ~~~~gy~~~~~~~-~~~~~~g~~~TGDl~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v  462 (545)
T PRK07768        395 SVTPGYLTMDGFI-PAQDADGWLDTGDLGYLTE----------EGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGV  462 (545)
T ss_pred             cccccccCCCCCc-ccccCCCeeeccceEEEec----------CCEEEEEccccceEEE-CCEecCHHHHHHHHHhCccc
Confidence            9999999865443 3344688999999999998          8999999999999998 89999999999999999999


Q ss_pred             cEEEEEeCC--CC----eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEec--
Q 012526          378 RQIVVIGQD--QR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--  449 (461)
Q Consensus       378 ~~a~V~~~~--~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--  449 (461)
                      .+++|++.+  +.    ...++++....               .......++.+++++.+.+...   .+++++.+++  
T Consensus       463 ~~~~vv~~~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~~l~~~~~~~l~~~~~---~~p~~v~~v~~~  524 (545)
T PRK07768        463 RPGNAVAVRLDAGHSREGFAVAVESNAF---------------EDPAEVRRIRHQVAHEVVAEVG---VRPRNVVVLGPG  524 (545)
T ss_pred             ccceEEEEEecCCCCceEEEEEEEeccc---------------ccHHHHHHHHHHHHHHHHHHhC---CCccEEEEeCCC
Confidence            998777542  22    23333332211               0112234566777777666532   2677899997  


Q ss_pred             CCCCCCCCccc
Q 012526          450 EPFTVNFLCLA  460 (461)
Q Consensus       450 ~~~~~~~g~~~  460 (461)
                      +.|...+||+.
T Consensus       525 ~lP~t~~GKi~  535 (545)
T PRK07768        525 SIPKTPSGKLR  535 (545)
T ss_pred             cCCCCCchhHH
Confidence            78888999873

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1e-37  Score=348.87  Aligned_cols=366  Identities=17%  Similarity=0.150  Sum_probs=271.9

Q ss_pred             CCCCCCeEEEEe---cCCCCCCchhheechHHHHHHHHHHhhhc---CCCCCcEEEEECChhhhHHHhhhhhhhccCeEE
Q 012526           21 TIGSDDIATYVY---TSGTTGNPKGVMLTHKNLLHQIRSLYDIV---PAENGDKFLSMLPPWHVYERACGYFIFSRGIEL   94 (461)
Q Consensus        21 ~~~~~~~a~i~~---TSGTTG~PK~v~~sh~~l~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~   94 (461)
                      ...++|++.|+|   ||||||.||||++||+|++.++.......   ...++|++++++|++|+++....+.++..|+++
T Consensus       594 ~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I  673 (1452)
T PTZ00297        594 HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAV  673 (1452)
T ss_pred             CCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEE
Confidence            346788999986   99999999999999999999888765432   356789999999999999987777789999999


Q ss_pred             EEcchhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           95 MYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        95 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                      .++++..+++.+++++||+++++|.+|+.+.....+.......+++.+..+..+....      ....            
T Consensus       674 ~~~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~------~~~~------------  735 (1452)
T PTZ00297        674 ATVDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSR------LINI------------  735 (1452)
T ss_pred             EeCCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH------HHhc------------
Confidence            9889999999999999999999999999998877655443333333322222211100      0000            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCC-ceeEEeccC--CCchhHHHHHHHhCCeeeeecccCCCccce
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGI-SKAGVSGGG--SLPMHIDLFYEAIGVKVQVGYGLTESSPVI  251 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~i~~gg~--~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~  251 (461)
                                      ......++++++++++++.+|. +|.+++||+  +++..     ...++++..+||+||+.   
T Consensus       736 ----------------g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~-----l~~~i~i~~g~glTE~~---  791 (1452)
T PTZ00297        736 ----------------HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFS-----LLEHISVCYVPCLREVF---  791 (1452)
T ss_pred             ----------------CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChH-----HhCCceEEEecceEEee---
Confidence                            0112235678999999999985 788888874  34422     22367888999999953   


Q ss_pred             eccCCCCCCccccccCCCCeEEEEEeC-CCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeecc
Q 012526          252 AARRPTCNVLGSVGHPINHTEIKIVDA-ETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  330 (461)
Q Consensus       252 ~~~~~~~~~~~~~G~~~~~~~i~i~d~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~  330 (461)
                      +.+.+.....  .|.|+|+++++|.+. +.+.   .+..|||+++       |+++|+.|.+.+  +||+         +
T Consensus       792 ~~~~~~~~~~--~G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~  848 (1452)
T PTZ00297        792 FLPSEGVFCV--DGTPAPSLQVDLEPFDEPSD---GAGIGQLVLA-------KKGEPRRTLPIA--AQWK---------R  848 (1452)
T ss_pred             eecCCCCccc--CCeecCceEEEEcccccccC---CCCCCeEEEE-------ECCChHHHHHhh--CcCc---------c
Confidence            3344443332  399999999999873 3222   1236999995       458899998743  5775         3


Q ss_pred             CCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeEEEEEcChHHHH-HHHHHcC
Q 012526          331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVL-MAAKRLS  409 (461)
Q Consensus       331 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~~~~~-~~~~~~~  409 (461)
                                ||.++|.||.||+|++++|++|.|..||+++..+|.|.+++|+|.+++.++|+||++.+.+. .++++++
T Consensus       849 ----------dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~lvALVvpd~e~l~~~wa~~~g  918 (1452)
T PTZ00297        849 ----------DRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRPIIAIVSPNRDTVEFEWRQSHC  918 (1452)
T ss_pred             ----------CCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCceEEEEEeCHHHHHHHHHHHcC
Confidence                      79999999999999999999999999999999999999999999988889999999999998 8898887


Q ss_pred             CCcC--CccccCcHHH----HHHHHHH---HHHHhccCC-CccccEEEecCCCCCCCCcccC
Q 012526          410 IVHA--DASELSKEKT----ISLLYGE---LRKWTSKCS-FQIGPIHVVDEPFTVNFLCLAL  461 (461)
Q Consensus       410 ~~~~--~~~~~~~~~l----~~~~~~~---l~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~  461 (461)
                      +...  +....+.+++    .+.+.+.   +.+.+.... +.++.|++++++|+++||+||+
T Consensus       919 i~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTP  980 (1452)
T PTZ00297        919 MGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTP  980 (1452)
T ss_pred             CCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCCh
Confidence            6532  1111222222    1233333   444444332 5556789999999999999985

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-38  Score=335.70  Aligned_cols=340  Identities=23%  Similarity=0.302  Sum_probs=243.1

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh-cC-----CCCCcEEEEECChhhhHHHhh-hhhhhccCeE
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-VP-----AENGDKFLSMLPPWHVYERAC-GYFIFSRGIE   93 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~-~~-----~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~   93 (461)
                      ...++++++++|||||||.||+|++||+++++++...... +.     ..+++++++++|++|.+++.. .+.++..|++
T Consensus       156 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~  235 (578)
T PRK05850        156 PRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCP  235 (578)
T ss_pred             CCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCc
Confidence            3467899999999999999999999999998876654432 22     356789999999999999876 5566899999


Q ss_pred             EEEc-------chhhHHHHHhHhCCcEEEechhHHHHHHHH-HHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccccc
Q 012526           94 LMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSG-IQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL  165 (461)
Q Consensus        94 ~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (461)
                      +++.       ++..+++.+.++++++. .+|..+..+... ......                                
T Consensus       236 ~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~--------------------------------  282 (578)
T PRK05850        236 AVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDM--------------------------------  282 (578)
T ss_pred             EEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhh--------------------------------
Confidence            8875       36778899999998854 566654333221 000000                                


Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh---C---Cee
Q 012526          166 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---G---VKV  238 (461)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~---~---~~v  238 (461)
                                                              ....+..+|.+++||+++++.+ +++.+.+   +   ..+
T Consensus       283 ----------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  322 (578)
T PRK05850        283 ----------------------------------------AGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAI  322 (578)
T ss_pred             ----------------------------------------cCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccc
Confidence                                                    0011223488999999998876 5555555   2   368


Q ss_pred             eeecccCCCccceeccCCCCC-------------------------CccccccCCCCeEEEEEeCCCCCcCCCCCceEEE
Q 012526          239 QVGYGLTESSPVIAARRPTCN-------------------------VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK  293 (461)
Q Consensus       239 ~~~YG~tE~~~~~~~~~~~~~-------------------------~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~  293 (461)
                      ++.||+||++..+........                         ....+|.|. +.+++++|++++.+++.|+.|||+
T Consensus       323 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~  401 (578)
T PRK05850        323 RPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIW  401 (578)
T ss_pred             cCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEE
Confidence            999999998765443221100                         011345543 578999998888899999999999


Q ss_pred             EecCCccccccCCchhhccccC-----------CCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceee
Q 012526          294 VRGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV  362 (461)
Q Consensus       294 v~~~~~~~gy~~~~~~~~~~f~-----------~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v  362 (461)
                      |+|++++.||+++|+.+++.|.           .++||+|||+|+++           +|++++.||.||+|++ +|++|
T Consensus       402 v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-----------~G~l~~~GR~~d~i~~-~G~~i  469 (578)
T PRK05850        402 VHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-----------EGELFIVGRIKDLLIV-DGRNH  469 (578)
T ss_pred             EecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-----------CCEEEEEcccccEEEE-CCeec
Confidence            9999999999999999998884           25799999999876           5999999999999997 89999


Q ss_pred             cchhHHHHHhcCccccEEEEEeCCCC---eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCC
Q 012526          363 EPLELEEAALRSSLIRQIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS  439 (461)
Q Consensus       363 ~~~eIE~~l~~~p~V~~a~V~~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  439 (461)
                      +|.|||++|.+||.+. ++|++.+++   .+.++|+.++...          .........+++++.+...+.++.   .
T Consensus       470 ~p~eIE~~l~~~~~~~-~~v~~v~~~~~~~~~a~v~~~~~~~----------~~~~~~~~~~~l~~~v~~~l~~~~---~  535 (578)
T PRK05850        470 YPDDIEATIQEITGGR-VAAISVPDDGTEKLVAIIELKKRGD----------SDEEAMDRLRTVKREVTSAISKSH---G  535 (578)
T ss_pred             CHHHHHHHHHHhcCCc-EEEEEecCCCceEEEEEEEeccccC----------cchhhhhhHHHHHHHHHHHHHHHh---C
Confidence            9999999999999964 777777643   5667777653200          000000012334444444444332   2


Q ss_pred             CccccEEEec--CCCCCCCCccc
Q 012526          440 FQIGPIHVVD--EPFTVNFLCLA  460 (461)
Q Consensus       440 ~~~~~~~~~~--~~~~~~~g~~~  460 (461)
                      .++..+.+++  +.|.+.+||+.
T Consensus       536 ~~~~~~~~~~~~~iP~t~~GKi~  558 (578)
T PRK05850        536 LSVADLVLVAPGSIPITTSGKIR  558 (578)
T ss_pred             CCceEEEEeCCCCcCCCCCchHH
Confidence            3566787886  67889999973

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-38  Score=327.85  Aligned_cols=326  Identities=19%  Similarity=0.213  Sum_probs=257.3

Q ss_pred             CCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhc---------CC------CCCcEEEEECChhhhHHHhhhhhhhc
Q 012526           25 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV---------PA------ENGDKFLSMLPPWHVYERACGYFIFS   89 (461)
Q Consensus        25 ~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~---------~~------~~~d~~~~~~p~~~~~~~~~~~~~l~   89 (461)
                      .|.++++|||||||.||+|+++|+++..........+         .+      ..+++++..+|++|..++...+.++.
T Consensus       163 ~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~  242 (533)
T PRK07798        163 PDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALF  242 (533)
T ss_pred             CCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHh
Confidence            4567999999999999999999999876544322211         11      56789999999999999988888899


Q ss_pred             cCeEEEEcc-----hhhHHHHHhHhCCcEEEechhHHHH-HHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012526           90 RGIELMYTA-----VRNLKDDLQRYQPHYMISVPLVYET-LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGF  163 (461)
Q Consensus        90 ~G~~~~~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (461)
                      .|+++++.+     +..+++.++++++|.+.++|..+.. +......                                 
T Consensus       243 ~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------------------  289 (533)
T PRK07798        243 SGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEA---------------------------------  289 (533)
T ss_pred             cCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcc---------------------------------
Confidence            999998864     7789999999999999999877643 2221110                                 


Q ss_pred             ccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeee
Q 012526          164 CLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVG  241 (461)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~  241 (461)
                                                               .....+..+|.+++||+++++.+ .++.+.+ +..+++.
T Consensus       290 -----------------------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~  328 (533)
T PRK07798        290 -----------------------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDS  328 (533)
T ss_pred             -----------------------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEee
Confidence                                                     00012334599999999999887 4555556 7899999


Q ss_pred             cccCCCccceeccCCCCCCccccc--cCCCCeEEEEEeCCCCCcCCCCCc--eEEEEecCCccccccCCchhhccccCC-
Q 012526          242 YGLTESSPVIAARRPTCNVLGSVG--HPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDE-  316 (461)
Q Consensus       242 YG~tE~~~~~~~~~~~~~~~~~~G--~~~~~~~i~i~d~~~~~~~~~g~~--Gel~v~~~~~~~gy~~~~~~~~~~f~~-  316 (461)
                      ||+||++..........  ....|  .+.++..+++++++ +++++.|+.  |+++. ++.++.||+++++.+...|.. 
T Consensus       329 YG~tE~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~~~-~~~~~~g~~~~g~l~~-~~~~~~gy~~~~~~t~~~f~~~  404 (533)
T PRK07798        329 IGSSETGFGGSGTVAKG--AVHTGGPRFTIGPRTVVLDED-GNPVEPGSGEIGWIAR-RGHIPLGYYKDPEKTAETFPTI  404 (533)
T ss_pred             ecccccccccccCCCCC--CccCCCCccCCCceEEEECCC-CCCCCCCCCCeeEEEe-ecCccccccCChhhhHHhhccC
Confidence            99999976554332211  12233  78889999999954 668888887  76664 568999999999999888743 


Q ss_pred             --CCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----ee
Q 012526          317 --DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RP  390 (461)
Q Consensus       317 --~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~  390 (461)
                        ++||+|||++++++          +|.+++.||.||+|+. +|++|++.+||+++.++|.|.+++|++.+++    .+
T Consensus       405 ~~~~~~~TGD~~~~~~----------~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  473 (533)
T PRK07798        405 DGVRYAIPGDRARVEA----------DGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEV  473 (533)
T ss_pred             CCCceEEcCcEEEEcC----------CCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceE
Confidence              46999999999998          8999999999999996 8999999999999999999999999998654    46


Q ss_pred             EEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          391 GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       391 ~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      .+++++.++                ...+.++++++++++|+.|.     .+..+.++++.|.+.+||+.
T Consensus       474 ~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~t~~GK~~  522 (533)
T PRK07798        474 VAVVQLREG----------------ARPDLAELRAHCRSSLAGYK-----VPRAIWFVDEVQRSPAGKAD  522 (533)
T ss_pred             EEEEEECCC----------------CCCCHHHHHHHHhhhcccCC-----CCeEEEEcccCCCCCcchhh
Confidence            677776532                34577899999999998876     66789999999999999974

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-38  Score=353.50  Aligned_cols=320  Identities=14%  Similarity=0.124  Sum_probs=245.2

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhh-hccCeEEEEc---c
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT---A   98 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~-l~~G~~~~~~---~   98 (461)
                      .++|+++|+|| ||||.||++.++|.+...........++++++|++++.+|++|.+++...+.+ +..|.++++.   +
T Consensus       604 ~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~  682 (994)
T PRK07868        604 LARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLD  682 (994)
T ss_pred             CCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCC
Confidence            36899999999 57888888888887765544445556788999999999999999999776555 5666666553   5


Q ss_pred             hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHH
Q 012526           99 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  178 (461)
Q Consensus        99 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (461)
                      +..+++.|+++++|++.++|+++..+.+.....                                               
T Consensus       683 ~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~-----------------------------------------------  715 (994)
T PRK07868        683 PDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV-----------------------------------------------  715 (994)
T ss_pred             HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc-----------------------------------------------
Confidence            889999999999999999999998876521000                                               


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC-CeeeeecccCCCccceeccCC
Q 012526          179 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                  ...+.++|.++ |+ .+++.+ +++.+.++ +.+++.||+||++..... . 
T Consensus       716 ----------------------------~~~~~slr~~~-g~-gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~-~-  763 (994)
T PRK07868        716 ----------------------------LHGNHPVRLFI-GS-GMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN-V-  763 (994)
T ss_pred             ----------------------------cCCCCceEEEe-cC-CCCHHHHHHHHHHhCchheeeeeecccccccccc-c-
Confidence                                        01122346655 43 377665 66777775 789999999998755432 2 


Q ss_pred             CCCCccccccCCCCe-EEEEE--eC--------CCC--CcCCCCCceEEEEecCCccccccCCchhhc--cccC-CCCcc
Q 012526          257 TCNVLGSVGHPINHT-EIKIV--DA--------ETN--EVLPAGSKGIVKVRGSQVMQGYFKNPSATK--QALD-EDGWL  320 (461)
Q Consensus       257 ~~~~~~~~G~~~~~~-~i~i~--d~--------~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~--~~f~-~~~~~  320 (461)
                      ....++++|+|++++ +++|.  |+        +.+  +.++.|+.|||++++++.    + +|+.+.  ..|. .+|||
T Consensus       764 ~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~  838 (994)
T PRK07868        764 SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWI  838 (994)
T ss_pred             CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEE
Confidence            234567899999997 66654  21        334  457889999999998864    2 344332  2342 48999


Q ss_pred             cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC---eeEEEEEcC
Q 012526          321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR---RPGAIIVPD  397 (461)
Q Consensus       321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~---~~~a~vv~~  397 (461)
                      +|||+|++++          ||+++|+||.||+|++ +|.+|+|.|||++|.+||+|.+|+|++.+++   .+.++|+++
T Consensus       839 ~TGDlg~~d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~  907 (994)
T PRK07868        839 STEYLFRRDD----------DGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLR  907 (994)
T ss_pred             eccceEEEcC----------CCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeC
Confidence            9999999999          9999999999999997 7889999999999999999999999998754   567888875


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++                ...+.++|++++++ ++.|+     .|+.|.++++.|.+.|||+.
T Consensus       908 ~~----------------~~~~~~~L~~~l~~-l~~y~-----vP~~i~~v~~lP~T~sGKi~  948 (994)
T PRK07868        908 PG----------------AAITAADLTEALAS-LPVGL-----GPDIVHVVPEIPLSATYRPT  948 (994)
T ss_pred             CC----------------CcCCHHHHHHHHHh-CCCCc-----CCeEEEEeCCCCCCccccEe
Confidence            43                34677889999984 77776     67899999999999999873

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.5e-38  Score=320.70  Aligned_cols=271  Identities=25%  Similarity=0.357  Sum_probs=235.2

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcc---
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---   98 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~---   98 (461)
                      ..++++++++|||||||.||+|.+||+++...+......+++.++|++++..|++|.+++...+.++..|+++++.+   
T Consensus       117 ~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~  196 (408)
T TIGR01733       117 SGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDE  196 (408)
T ss_pred             CCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhh
Confidence            35789999999999999999999999999998888888889999999999999999999888888899999998852   


Q ss_pred             ---hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           99 ---VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        99 ---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                         +..+...+++++++.+.++|.+++.+.+...                                              
T Consensus       197 ~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~----------------------------------------------  230 (408)
T TIGR01733       197 ERDAALLAALIAEHPVTVLNLTPSLLALLAAALP----------------------------------------------  230 (408)
T ss_pred             ccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh----------------------------------------------
Confidence               4678888999999999999999998876422                                              


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC-CeeeeecccCCCccceec
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~-~~v~~~YG~tE~~~~~~~  253 (461)
                                                      ..+..+|.+++||+++++.+ +.+.+.++ ..+++.||+||++..+..
T Consensus       231 --------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~  278 (408)
T TIGR01733       231 --------------------------------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTA  278 (408)
T ss_pred             --------------------------------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEE
Confidence                                            12233589999999999887 56666776 899999999999887753


Q ss_pred             cCCCC---C--CccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCC------C--cc
Q 012526          254 RRPTC---N--VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------G--WL  320 (461)
Q Consensus       254 ~~~~~---~--~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~------~--~~  320 (461)
                      .....   .  ...++|.|.++++++|++++ +++++.|+.|||++++++++.||+++++.+...|..+      +  ||
T Consensus       279 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~  357 (408)
T TIGR01733       279 TLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLY  357 (408)
T ss_pred             EEcCccccCCccccccCcccCCceEEEECCC-CCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEE
Confidence            22111   1  26679999999999999976 8889999999999999999999999999998887433      2  99


Q ss_pred             cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEE
Q 012526          321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  382 (461)
Q Consensus       321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V  382 (461)
                      +|||++++++          +|.+++.||.+|+|+. +|++|+|.+||+++.+||.|.+|+|
T Consensus       358 ~TGDl~~~d~----------~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       358 RTGDLVRYLP----------DGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             ECCceEEEcC----------CCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhcC
Confidence            9999999998          8999999999999997 8999999999999999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=3.6e-38  Score=320.72  Aligned_cols=251  Identities=35%  Similarity=0.591  Sum_probs=209.2

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh--hhcCCCCCcEEEEECChhhhHHH-hhhhhhhccCeEEEEcc-
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYER-ACGYFIFSRGIELMYTA-   98 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~~~-~~~~~~l~~G~~~~~~~-   98 (461)
                      .++++++++|||||||.||+|.++|+++...+..+.  ..++++  |++++++|++|.+++ ...+.++..|+++++.+ 
T Consensus       153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  230 (417)
T PF00501_consen  153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSP  230 (417)
T ss_dssp             TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESS
T ss_pred             CccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccccccccccc
Confidence            579999999999999999999999999998877754  223334  699999999999999 66778899999999964 


Q ss_pred             -----hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           99 -----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        99 -----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                           +..+++.+++++++++.++|.++..+.+ ..+...                                        
T Consensus       231 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~-~~~~~~----------------------------------------  269 (417)
T PF00501_consen  231 FDLFDPESLLELISRYKPTILFAVPSMLEALLQ-SPEEKT----------------------------------------  269 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHH-HHHTTH----------------------------------------
T ss_pred             ccccccccchhcccccccccccccccccccccc-cccccc----------------------------------------
Confidence                 3457899999999999999999999876 222100                                        


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCC-eeeeecccCCCccce
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVI  251 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~-~v~~~YG~tE~~~~~  251 (461)
                                                    ......+..+|.+++||+++++++ +.+.+.++. ++++.||+||++.++
T Consensus       270 ------------------------------~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  319 (417)
T PF00501_consen  270 ------------------------------KISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIA  319 (417)
T ss_dssp             ------------------------------HGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEE
T ss_pred             ------------------------------cccccccccccccccccccCChhhccccccccccccceecccccccceee
Confidence                                          000124455699999999999987 555566776 999999999999998


Q ss_pred             eccC--CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          252 AARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       252 ~~~~--~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      +...  ......+++|.|+++++++|+|+++++++++|+.|||+|+|++++.||+++|+.+.+.|.++|||+|||+|+++
T Consensus       320 ~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d  399 (417)
T PF00501_consen  320 TIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLD  399 (417)
T ss_dssp             EEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecceEEEEC
Confidence            7653  22246778999999999999998889999999999999999999999999999999999766899999999999


Q ss_pred             cCCCCCcccccCCeEEEeccccceEEc
Q 012526          330 PHHSRGRSRRCGGVLVLEGRAKDTIVL  356 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~  356 (461)
                      +          +|.++++||.||+||+
T Consensus       400 ~----------~G~~~~~GR~~~~i~~  416 (417)
T PF00501_consen  400 E----------DGYLYILGRSDDMIKV  416 (417)
T ss_dssp             T----------TSEEEEEEEGSCEEEE
T ss_pred             C----------CCeEEEEEeeCCEEEe
Confidence            8          8999999999999986

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=1.2e-34  Score=290.12  Aligned_cols=287  Identities=19%  Similarity=0.149  Sum_probs=215.2

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCC--CCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc--
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--   97 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~--~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~--   97 (461)
                      ..++.++++|||||||.||+|.+||+++.+.+..+...++++  +.|++++++|++|++++.. .+.++..|++++..  
T Consensus        93 ~~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~  172 (386)
T TIGR02372        93 STPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA  172 (386)
T ss_pred             CCCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC
Confidence            335689999999999999999999999998887777777764  3468999999999999754 45678889999875  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++.+  ++++++|+++..+.+..                                                
T Consensus       173 ~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~------------------------------------------------  202 (386)
T TIGR02372       173 APASGIMRHARPG--DLIVGTPFIWEQLADLD------------------------------------------------  202 (386)
T ss_pred             CChHHHHHhhccC--CEEEECcHHHHHHHhhC------------------------------------------------
Confidence             455666666533  78999999998875421                                                


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCC-eeeeecccCCCccceeccC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARR  255 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~  255 (461)
                                                     ..+.+++. ++||+++++++.+.+...+. .+++.||+||++.++....
T Consensus       203 -------------------------------~~l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~~~~  250 (386)
T TIGR02372       203 -------------------------------YRLPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGLREA  250 (386)
T ss_pred             -------------------------------cCCCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccccccC
Confidence                                           01112254 67899999887555544554 6999999999987654322


Q ss_pred             CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCC
Q 012526          256 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  335 (461)
Q Consensus       256 ~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~  335 (461)
                           ++..|.+.|++++.+ +  ++.        +   .|+                   ..|++|||++++++     
T Consensus       251 -----~~~~~~~~p~~~~~~-~--~~~--------~---~g~-------------------~~~~~tgD~g~~d~-----  287 (386)
T TIGR02372       251 -----PDDPFRLLPDLACFA-D--TLS--------S---AGL-------------------ARRLDLQDRLAWDK-----  287 (386)
T ss_pred             -----CCCCcccCCCccccC-C--Ccc--------C---CCc-------------------cceeecCceEEEcC-----
Confidence                 223567777766533 1  110        0   011                   23689999999998     


Q ss_pred             cccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeEEEEEcChHHHHHHHHHcCCCcCCc
Q 012526          336 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADA  415 (461)
Q Consensus       336 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~  415 (461)
                           +|+++|.||.||+|++ +|++|+|.+||++|.+||+|.+++|+.. .+.+.++||++++.              .
T Consensus       288 -----~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~~~v~~~-g~~~~a~vv~~~~~--------------~  346 (386)
T TIGR02372       288 -----DGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPRVRAAAVRLD-GRRLKAFIVVAEDA--------------D  346 (386)
T ss_pred             -----CCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCCceEEEEEcC-CceEEEEEEECCCC--------------C
Confidence                 8999999999999997 8999999999999999999999999754 45778888876420              0


Q ss_pred             cccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          416 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       416 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      .....++++++++++|+.|+     +|+.|.++++.|.+.+||+.
T Consensus       347 ~~~~~~~l~~~~~~~L~~~~-----~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       347 EAELEIELRATAARHLPAPA-----RPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             hHHHHHHHHHHHHHhCCCCC-----CCcEEEEcccCCCCCCCCcC
Confidence            01124577888888887776     77899999999999999973

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=2.3e-34  Score=293.49  Aligned_cols=300  Identities=20%  Similarity=0.225  Sum_probs=216.3

Q ss_pred             ccccccccccccCcccCC--CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHH---HhhhcCCCCCcEEEEECChh
Q 012526            2 LFSLPILTPVIAGKHYKY--ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS---LYDIVPAENGDKFLSMLPPW   76 (461)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~---~~~~~~~~~~d~~~~~~p~~   76 (461)
                      |..||+++|.....+++.  ...+.++++++++||||||.||+|.++|.++......   ....+++.++|++++..+..
T Consensus        50 l~~lP~~~K~~l~~~~~~~~~~~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~  129 (422)
T TIGR02155        50 LAKFPFTQKHDLRDNYPFGLFAVPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYG  129 (422)
T ss_pred             HHHCCCCcHHHHhhcCCCcccCCChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCcc
Confidence            457899999866666543  2346678899999999999999999999988655333   33446889999998876543


Q ss_pred             hhHH-HhhhhhhhccCeEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHH
Q 012526           77 HVYE-RACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFA  152 (461)
Q Consensus        77 ~~~~-~~~~~~~l~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (461)
                      +..+ +...+.....|++++..   ++..+++.|++++|+++.++|+++..|++..++...+.                 
T Consensus       130 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~-----------------  192 (422)
T TIGR02155       130 LFTGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP-----------------  192 (422)
T ss_pred             ccchhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc-----------------
Confidence            3222 22233456778887764   46789999999999999999999999887543321110                 


Q ss_pred             HHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HH
Q 012526          153 YTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FY  231 (461)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~  231 (461)
                                                                              ....+|.+++||+++++++.+ +.
T Consensus       193 --------------------------------------------------------~~~~lr~i~~~ge~l~~~~~~~i~  216 (422)
T TIGR02155       193 --------------------------------------------------------AQTSLQVGIFGAEPWTNAMRKEIE  216 (422)
T ss_pred             --------------------------------------------------------ccCceEEEEEeCCcCCHHHHHHHH
Confidence                                                                    011348999999999988754 44


Q ss_pred             HHhCCeeeeecccCCCcc--ceeccCCCCCCccccccCC--CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCc
Q 012526          232 EAIGVKVQVGYGLTESSP--VIAARRPTCNVLGSVGHPI--NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNP  307 (461)
Q Consensus       232 ~~~~~~v~~~YG~tE~~~--~~~~~~~~~~~~~~~G~~~--~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~  307 (461)
                      +.||+++++.||+||+++  ++..+..  .   ..|.+.  +++.++|+|+++++++++|+.|||++++.          
T Consensus       217 ~~~g~~v~~~YG~tE~~~~~~~~~~~~--~---~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~----------  281 (422)
T TIGR02155       217 ARLGMKATDIYGLSEVIGPGVAMECVE--T---QDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL----------  281 (422)
T ss_pred             HHhCCceEecccchhhcCCceeecccc--c---CCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC----------
Confidence            567999999999999853  2221111  1   112233  35778899988899999999999999963          


Q ss_pred             hhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCcccc-EEEEEeCC
Q 012526          308 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR-QIVVIGQD  386 (461)
Q Consensus       308 ~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~-~a~V~~~~  386 (461)
                        +...| +.+||+|||++++++  .||+..  ...+++.||.+|+|++ +|.+|+|.+||.+|.+||+|. +++++...
T Consensus       282 --~~~~~-p~~ry~TGDl~~~~~--~~Gr~~--~~~~~i~GR~~d~i~~-~G~~v~p~eie~~l~~~~~v~~~~q~~~~~  353 (422)
T TIGR02155       282 --TKEAL-PVIRYRTRDLTRLLP--GTARTM--RRMDRITGRSDDMLII-RGVNVFPTQLEEVILKMDELSPHYQLELTR  353 (422)
T ss_pred             --Ccccc-ceeeEEcCcEEEEEC--CCCCcc--cccccccCccCCeEEE-CCEEECHHHHHHHHHhCcCcCCCEEEEEEc
Confidence              22334 467999999999976  233221  1256899999999997 799999999999999999997 66665443


Q ss_pred             C---CeeEEEEEcC
Q 012526          387 Q---RRPGAIIVPD  397 (461)
Q Consensus       387 ~---~~~~a~vv~~  397 (461)
                      .   +.+.+.|+..
T Consensus       354 ~~~~~~~~~~v~~~  367 (422)
T TIGR02155       354 NGHMDELTLKVELK  367 (422)
T ss_pred             CCCccEEEEEEEEe
Confidence            2   2555666654

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=6.5e-33  Score=272.10  Aligned_cols=311  Identities=25%  Similarity=0.324  Sum_probs=238.5

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhh-hhccCeEEEE---cc
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMY---TA   98 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~-~l~~G~~~~~---~~   98 (461)
                      +-.++++++|||||||.||+.+++|.........+...++++++|+++..+|++|+++.+++.. ++..|+++++   ++
T Consensus       240 ~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFS  319 (649)
T KOG1179|consen  240 TFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFS  319 (649)
T ss_pred             cccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccc
Confidence            4568999999999999999999999999988888888899999999999999999999998765 4899999998   68


Q ss_pred             hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHH
Q 012526           99 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  178 (461)
Q Consensus        99 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (461)
                      ...||++..+|++|++.-.-.+.+-|+.    +.....                                          
T Consensus       320 AS~FW~DC~k~~~Tv~QYIGElcRYLl~----~p~~~~------------------------------------------  353 (649)
T KOG1179|consen  320 ASNFWDDCRKYNVTVIQYIGELCRYLLN----QPPSPE------------------------------------------  353 (649)
T ss_pred             hhhhHHHHHHhCCeeeehHHHHHHHHHc----CCCChh------------------------------------------
Confidence            9999999999999998754433333332    211000                                          


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCe-eeeecccCCCccceeccCCC
Q 012526          179 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVK-VQVGYGLTESSPVIAARRPT  257 (461)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~-v~~~YG~tE~~~~~~~~~~~  257 (461)
                                                   ++-.. -.+..|.+.-++-++++.+.||+. |.+.||+||...-....   
T Consensus       354 -----------------------------er~Hk-VRla~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~---  400 (649)
T KOG1179|consen  354 -----------------------------ERQHK-VRLAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY---  400 (649)
T ss_pred             -----------------------------hcCce-EEEEecCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee---
Confidence                                         00011 234556666677789999999765 99999999986543322   


Q ss_pred             CCCcccccc------CCCCeEEEEEeCCCCCc----------CCCCCceEEE--EecCCc---cccccCCchhhcccc--
Q 012526          258 CNVLGSVGH------PINHTEIKIVDAETNEV----------LPAGSKGIVK--VRGSQV---MQGYFKNPSATKQAL--  314 (461)
Q Consensus       258 ~~~~~~~G~------~~~~~~i~i~d~~~~~~----------~~~g~~Gel~--v~~~~~---~~gy~~~~~~~~~~f--  314 (461)
                      +.+.|.+|.      -+.-+++--.|++++++          |++||+|.++  |.....   |.||.+..++++...  
T Consensus       401 d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~r  480 (649)
T KOG1179|consen  401 DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLR  480 (649)
T ss_pred             cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHH
Confidence            222233322      22234444456677764          5899999775  333344   999999888887654  


Q ss_pred             ----CCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC--
Q 012526          315 ----DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR--  388 (461)
Q Consensus       315 ----~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~--  388 (461)
                          ..|-||+|||+-..|+          .|++||.+|..|++.. +|++|+..|||++|.....+.|+.|+|+.-+  
T Consensus       481 DVFkkGD~~f~tGDlLv~D~----------~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~  549 (649)
T KOG1179|consen  481 DVFKKGDVYFNTGDLLVADE----------LGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGY  549 (649)
T ss_pred             hhhccCcEEEeeCcEEEEec----------CCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCc
Confidence                2256999999999998          8999999999999997 9999999999999999999999999998422  


Q ss_pred             --eeE-EEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCC
Q 012526          389 --RPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS  439 (461)
Q Consensus       389 --~~~-a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  439 (461)
                        +.+ |.|+.+++                .+.+.+++-.+++..||.|.+|..
T Consensus       550 EGRaGMAaI~~~p~----------------~~~d~~~l~~~l~~~LP~YA~P~F  587 (649)
T KOG1179|consen  550 EGRAGMAAIVLDPT----------------TEKDLEKLYQHLRENLPSYARPRF  587 (649)
T ss_pred             cCccceEEEEecCc----------------ccchHHHHHHHHHhhCccccchHH
Confidence              232 55554433                578899999999999999997755

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.98  E-value=1.8e-30  Score=265.74  Aligned_cols=286  Identities=18%  Similarity=0.206  Sum_probs=203.9

Q ss_pred             ccccccccccccCcccC-------CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh---hcCCCCCcEEEE
Q 012526            2 LFSLPILTPVIAGKHYK-------YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLS   71 (461)
Q Consensus         2 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~---~~~~~~~d~~~~   71 (461)
                      |..||+++|......++       ....+.++++.+.+||||||.||+|.+||.++......+.+   ..++.++|+++.
T Consensus        56 l~~lP~~~k~~lr~~~p~~~~~~~~~~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~  135 (445)
T TIGR03335        56 LLELPVISGEVIRKNQPPVTDDFMFKSADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVI  135 (445)
T ss_pred             HHHCCCCCHHHHHhcCCccccccccccCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Confidence            35789999986555543       44557788999999999999999999999998766544433   348899999999


Q ss_pred             ECChhhhHHHhh-hhhhhccCeEEEEcc-hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 012526           72 MLPPWHVYERAC-GYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRI  149 (461)
Q Consensus        72 ~~p~~~~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  149 (461)
                      ..+..+..+... .+.+...|++++... ....++.+++++++.+.++|+.+..+++.+++.+.+.              
T Consensus       136 ~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~--------------  201 (445)
T TIGR03335       136 CASYGMNVGANTMTLAAREVGMSIIPEGKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP--------------  201 (445)
T ss_pred             EecCCcchhHHHHHHHHHHcCCEEEcCCchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc--------------
Confidence            988776655433 334467787776543 3567899999999999999999887776544322110              


Q ss_pred             hHHHHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH
Q 012526          150 SFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL  229 (461)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~  229 (461)
                                                                                 ....+|.+++||+++++.+++
T Consensus       202 -----------------------------------------------------------~~~~lr~ii~gGE~l~~~~r~  222 (445)
T TIGR03335       202 -----------------------------------------------------------AESSIRRLVVGGESFADESRN  222 (445)
T ss_pred             -----------------------------------------------------------ccCcceEEEEcCCCCCHHHHH
Confidence                                                                       012348999999999988755


Q ss_pred             H-HHHhCCeeeeecccCCCccceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCch
Q 012526          230 F-YEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS  308 (461)
Q Consensus       230 ~-~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~  308 (461)
                      . .+.+|+++++.||+||++. +..+..    ....+.+.+.+.++|+|+++++++++|+.|||++++.......     
T Consensus       223 ~ie~~~g~~v~~~YG~TE~~~-~~~c~~----~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~r-----  292 (445)
T TIGR03335       223 YVEELWGCEVYNTYGSTEGTM-CGECQA----VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGER-----  292 (445)
T ss_pred             HHHHHhCCcEEecCChhhhhh-eEEecC----CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCcc-----
Confidence            4 4567999999999999863 222211    1112333456789999999999999999999999975321000     


Q ss_pred             hhccccCCCCcccCCceEeec--cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcC---cccc
Q 012526          309 ATKQALDEDGWLNTGDIGWIA--PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS---SLIR  378 (461)
Q Consensus       309 ~~~~~f~~~~~~~TGDlg~~~--~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~---p~V~  378 (461)
                       ....+   --|+|||++++.  +.|.||+..   -.+...||.||++++ +|.+|+|.+||++|.++   +++.
T Consensus       293 -~~~Pl---iRYrtgD~~~~~~~~~C~CGr~~---~r~~~~gR~dd~~~~-~g~~~~p~~ie~~l~~~~~~~~~~  359 (445)
T TIGR03335       293 -CGSLL---INYDTEDTTVVISRDRCPCGRTH---MRILNPEREAETIWI-SGVPFNRVDVERAVFQRENMDSLT  359 (445)
T ss_pred             -CCceE---EEeecCceEEEecCCCCCCCCCc---ceeCCCcccCceEEE-CCEEeCHHHHHHHHhccCCCCCCC
Confidence             00001   129999999873  334455432   224456999999998 89999999999999995   5553

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=2.6e-27  Score=254.34  Aligned_cols=270  Identities=22%  Similarity=0.301  Sum_probs=226.1

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---   97 (461)
                      ...+++.+|++|||||||.||||..+|+++.+.+.+....++++.+|+++...++.+..+....+.++..|++++..   
T Consensus       362 ~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~  441 (642)
T COG1020         362 ALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPAL  441 (642)
T ss_pred             cCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCcc
Confidence            34568999999999999999999999999999888888889999999999999998888888889999999999885   


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+.+.+.+++++.+..+|..+..+........                                          
T Consensus       442 ~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~------------------------------------------  479 (642)
T COG1020         442 LQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD------------------------------------------  479 (642)
T ss_pred             ccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc------------------------------------------
Confidence               46788899999999999999999988876411100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh--CCeeeeecccCCCccce
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI--GVKVQVGYGLTESSPVI  251 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~--~~~v~~~YG~tE~~~~~  251 (461)
                                                     .......++.+++||+.++..+ .++....  ...+.+.||.||+....
T Consensus       480 -------------------------------~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~  528 (642)
T COG1020         480 -------------------------------LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDA  528 (642)
T ss_pred             -------------------------------ccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhhe
Confidence                                           0011112488999999998876 4455544  46899999999976655


Q ss_pred             eccCCCCCC--ccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          252 AARRPTCNV--LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       252 ~~~~~~~~~--~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      .........  ..++|+|++|.++.++| +..+++|.|..||+++.|.++..||+++|+.|...|..+.+|+|||++++.
T Consensus       529 ~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~  607 (642)
T COG1020         529 PSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPL  607 (642)
T ss_pred             eeEEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeEC
Confidence            433322211  35799999999999999 779999999999999999999999999999999999654599999999988


Q ss_pred             cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCc
Q 012526          330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  375 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p  375 (461)
                      +          +|.+.++||.|+++|+ +|.+|.+.|||..+.++|
T Consensus       608 ~----------dg~~e~lgr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         608 A----------DGALEYLGRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             C----------CCeEEEeccccceeEe-ceEecCcHHHHHHHhcCC
Confidence            8          8999999999999997 899999999999998875

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.95  E-value=1.9e-26  Score=226.30  Aligned_cols=303  Identities=21%  Similarity=0.207  Sum_probs=221.5

Q ss_pred             ccccccccccccCcccC--CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh---hcCCCCCcEEEEECCh-
Q 012526            2 LFSLPILTPVIAGKHYK--YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPP-   75 (461)
Q Consensus         2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~---~~~~~~~d~~~~~~p~-   75 (461)
                      |..||+++|...++.+|  ..+.+.++...|-.||||||.|+-+.+++..+......+.+   ..+...+|++..+.-. 
T Consensus        65 l~klP~t~K~~lre~ypf~~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yG  144 (438)
T COG1541          65 LAKLPFTTKDDLRENYPFGDFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYG  144 (438)
T ss_pred             HHhCCCCcHHHHHHhCCcccccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeec
Confidence            46799999998888887  34456677777888999999999999999877555444443   3577889988765541 


Q ss_pred             hhhHHHhhhhhhhccCeEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHH
Q 012526           76 WHVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFA  152 (461)
Q Consensus        76 ~~~~~~~~~~~~l~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (461)
                      .+..|+..-+.+-..|++++-.   +.+..++.++.++++++.++|+.+..|++.+.+.+.+...               
T Consensus       145 l~tgg~~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~---------------  209 (438)
T COG1541         145 LFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDK---------------  209 (438)
T ss_pred             cccCCchhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhh---------------
Confidence            1122222223334466666665   3567889999999999999999999999988776422111               


Q ss_pred             HHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-
Q 012526          153 YTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-  231 (461)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-  231 (461)
                                                                                -++|.++.|+|++++++++.. 
T Consensus       210 ----------------------------------------------------------~~lk~~i~gaE~~see~R~~ie  231 (438)
T COG1541         210 ----------------------------------------------------------LSLKKGIFGAEPWSEEMRKVIE  231 (438)
T ss_pred             ----------------------------------------------------------cceeEEEEecccCCHHHHHHHH
Confidence                                                                      123899999999999986655 


Q ss_pred             HHhCCeeeeecccCCCccce-eccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhh
Q 012526          232 EAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT  310 (461)
Q Consensus       232 ~~~~~~v~~~YG~tE~~~~~-~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~  310 (461)
                      +.||+.+++.||+||..+.. ..|....    -.....++..++++||++++.++.|+.|||+++.-.            
T Consensus       232 ~~~g~~~~diYGltE~~g~g~~eC~~~~----glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~------------  295 (438)
T COG1541         232 NRFGCKAFDIYGLTEGFGPGAGECTERN----GLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLT------------  295 (438)
T ss_pred             HHhCCceeeccccccccCCccccccccc----CCCcchhhceeeeecCCcCccCCCCCeeEEEEEecc------------
Confidence            55799999999999986653 2222111    233445678899999999999999999999998642            


Q ss_pred             ccccCCCCcccCCceEeeccCCC-CCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCcccc-EEEEEeCC--
Q 012526          311 KQALDEDGWLNTGDIGWIAPHHS-RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR-QIVVIGQD--  386 (461)
Q Consensus       311 ~~~f~~~~~~~TGDlg~~~~~~~-~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~-~a~V~~~~--  386 (461)
                      +..+ +---|+|||+..+.+.+| |||  ..--...|.||.||++.+ .|.+|+|.+||.+|.+++.+. +..++...  
T Consensus       296 ~~~~-PlIRYrtgDit~i~~~~C~cGr--~~~ri~~I~GR~dD~l~~-~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~  371 (438)
T COG1541         296 KEGM-PLIRYRTGDITVILSDPCGCGR--THRRIERIEGRSDDMLIV-RGVNVFPSQIERVLLQIPEVTPHYQIILTRNG  371 (438)
T ss_pred             ccCc-ceEEEEcCCeeEecccCCCCCC--ccccccccCcccccEEEE-CCEEeCHHHHHHHHhcccCCCceEEEEEecCC
Confidence            1111 111399999999987663 333  222345799999999998 799999999999999999999 55555544  


Q ss_pred             -CCeeEEEEEcC
Q 012526          387 -QRRPGAIIVPD  397 (461)
Q Consensus       387 -~~~~~a~vv~~  397 (461)
                       .+.+.+-|+..
T Consensus       372 ~~d~L~V~vE~~  383 (438)
T COG1541         372 GLDELTVRVELE  383 (438)
T ss_pred             CCceEEEEEEec
Confidence             56677777765

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.83  E-value=1.6e-18  Score=174.54  Aligned_cols=285  Identities=16%  Similarity=0.142  Sum_probs=180.1

Q ss_pred             ccccccccccccCcccCCCC---CCCC-------------------CeEEEEecCCCCCCchhheechHHHHHHHHHH-h
Q 012526            2 LFSLPILTPVIAGKHYKYET---IGSD-------------------DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-Y   58 (461)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~-~   58 (461)
                      |.++|+++|....+++..-.   ++.+                   ....+..||||||.|-.+..+........+.. .
T Consensus        54 l~~lPvl~K~~~~~~fd~~~t~~l~~~~~~~~a~~~e~~r~f~~~~~~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~  133 (430)
T TIGR02304        54 FNQWPMMDKALMMEHFDELNTAGLKKDEALDCAMRSEKTRDFKPCVGNISVGLSSGTSGRRGLFVVSPEEQQMWAGGILA  133 (430)
T ss_pred             HHHCCCcCHHHHHHHHHHhhccCCChhhhhHHhhhhhhhcccccccCcEEEEECCCCCCCceEEEECHHHHHHHHHHHHh
Confidence            45789998875555443222   1222                   24567789999999999999988654332222 2


Q ss_pred             --hhcCCCCCcEEEEECC-hhhhHHHhhhhhhhccCeEEEE----cchhhHHHHHhHhCCcEEEechhHHHHHHHHHHHH
Q 012526           59 --DIVPAENGDKFLSMLP-PWHVYERACGYFIFSRGIELMY----TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQ  131 (461)
Q Consensus        59 --~~~~~~~~d~~~~~~p-~~~~~~~~~~~~~l~~G~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  131 (461)
                        ...++..+++++..+. -.+.+.....     ....+.+    -+.+..++.|++++|+++.++|+.+..|++..++.
T Consensus       134 ~~~~~g~~~g~r~a~~~~~~~~ly~~~~~-----~~~~~~~~~l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~  208 (430)
T TIGR02304       134 KVLPDGLFAKHRIAFFLRADNNLYQSVNN-----RWISLDFFDLLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEG  208 (430)
T ss_pred             hhCccccccCCcEEEEEccChhHHHHHHh-----ccceeeecCCCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhc
Confidence              2235566777665531 1122211100     1111111    25778999999999999999999999999876553


Q ss_pred             hhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC
Q 012526          132 IFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG  211 (461)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  211 (461)
                      ...                                                                            -
T Consensus       209 ~l~----------------------------------------------------------------------------~  212 (430)
T TIGR02304       209 ELT----------------------------------------------------------------------------I  212 (430)
T ss_pred             CCC----------------------------------------------------------------------------C
Confidence            211                                                                            0


Q ss_pred             CceeEEeccCCCchhHHHH-HHHhCCeeeeecccCCCccceeccCCCCCCccccccCCCCeEEE--EEeCCCCCcCCCCC
Q 012526          212 ISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK--IVDAETNEVLPAGS  288 (461)
Q Consensus       212 ~~~~i~~gg~~l~~~~~~~-~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~i~--i~d~~~~~~~~~g~  288 (461)
                      .++.++++||.+++..++. .+.||++|++.||+|| |.++..+..     +.++.--..+-++  ++|+++ .      
T Consensus       213 ~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~-----g~lHl~ed~~~vE~~ivD~~~-~------  279 (430)
T TIGR02304       213 KPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRC-----GTLHLNEDLVHIEKQYLDEHK-R------  279 (430)
T ss_pred             CceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCC-----CCEEEccccEEEEeeEECCCC-c------
Confidence            1288999999999988655 5578999999999999 555443322     2222223334444  788542 2      


Q ss_pred             ceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCC-CCcccccCCeE-EEeccccceEEc--CCcee--e
Q 012526          289 KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS-RGRSRRCGGVL-VLEGRAKDTIVL--STGEN--V  362 (461)
Q Consensus       289 ~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~-~~~~~~~~G~l-~i~GR~~d~i~~--~~G~~--v  362 (461)
                       ++.+|++-.-.          ...+.   -|+|||++.+.+.+| ||+..   -.+ .|.||.+|++++  .+|..  |
T Consensus       280 -~~~ViT~L~n~----------~~PlI---RYrtGD~~~~~~~~C~CGr~~---~~i~~I~GR~dD~l~~~~~~G~~v~v  342 (430)
T TIGR02304       280 -FVPIITDFTRT----------TQPIV---RYRLNDILVESEQPCSCGSAT---MAIERIEGRQDDIFQLITRSGDEQTV  342 (430)
T ss_pred             -eEEEEecCCCc----------cceEE---eeeCCCEEEeCCCCCCCCCcc---cccCCccCccCCEEEEecCCCCeEEe
Confidence             34466542110          01111   299999988765444 44322   234 489999999984  35555  4


Q ss_pred             cchhHHHHHh-cCccccEEEEEeCCCCeeEEEEEcC
Q 012526          363 EPLELEEAAL-RSSLIRQIVVIGQDQRRPGAIIVPD  397 (461)
Q Consensus       363 ~~~eIE~~l~-~~p~V~~a~V~~~~~~~~~a~vv~~  397 (461)
                      +|..++.++. ..+.|.+..+++...+.+...+++.
T Consensus       343 ~p~~~~~~i~~~~~~i~~yQi~Q~~~~~l~v~~~~~  378 (430)
T TIGR02304       343 FPDFIRRVILFTLPLIVEYRVLQTGSAQLELIADCE  378 (430)
T ss_pred             CHHHHHHHHHhcCCCCceEEEEEccCCeEEEEEEeC
Confidence            8899988855 5889999999988877777777664

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.76  E-value=7.7e-18  Score=180.99  Aligned_cols=342  Identities=18%  Similarity=0.171  Sum_probs=220.7

Q ss_pred             CCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECCh--hhhHHHhhhhhhhccCeEEEEc--
Q 012526           22 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP--WHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        22 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~--~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      ..++..+++.||||+||.||+|.-+|..+.....++...+..+..++. .+.+.  .+..-.......+..|..+..+  
T Consensus       193 ~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~  271 (1032)
T KOG1178|consen  193 GGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLLVPTA  271 (1032)
T ss_pred             ecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHHHHhhHhhcCceeecccc
Confidence            356678899999999999999999999999988888888888877765 33221  1111111222234455545543  


Q ss_pred             ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                          .+.++.+.++++.++....+|+..+.++...... ..                                       
T Consensus       272 ~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~-~~---------------------------------------  311 (1032)
T KOG1178|consen  272 TIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTS-LP---------------------------------------  311 (1032)
T ss_pred             cCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcc-hh---------------------------------------
Confidence                2678999999999999999999988776643221 00                                       


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HHHHh--CCeeeeecccCCCccc
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI--GVKVQVGYGLTESSPV  250 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~~~~--~~~v~~~YG~tE~~~~  250 (461)
                                            .+......++.......++..+.+|++.+..+.- +...+  +...+ -|++++..+.
T Consensus       312 ----------------------~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~-~y~s~~~~~~  368 (1032)
T KOG1178|consen  312 ----------------------LLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGL-PYLSTDPTGL  368 (1032)
T ss_pred             ----------------------hhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeee-cccCCCCccc
Confidence                                  0001111222333334568999999999887643 33322  22222 2888887665


Q ss_pred             eeccCCCCC-------CccccccCCC----CeEEEEEeCCCCCcCCCCCceEEEE----ecCCccccccCCchhhcccc-
Q 012526          251 IAARRPTCN-------VLGSVGHPIN----HTEIKIVDAETNEVLPAGSKGIVKV----RGSQVMQGYFKNPSATKQAL-  314 (461)
Q Consensus       251 ~~~~~~~~~-------~~~~~G~~~~----~~~i~i~d~~~~~~~~~g~~Gel~v----~~~~~~~gy~~~~~~~~~~f-  314 (461)
                      .........       ....+..-..    ........ ..+.+.+.++.+....    .+..+..| +..++.....+ 
T Consensus       369 ~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~  446 (1032)
T KOG1178|consen  369 VSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFL  446 (1032)
T ss_pred             eeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCccc
Confidence            543221110       0000111000    11122222 2333333333332222    22333444 23333322222 


Q ss_pred             ----CCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe-
Q 012526          315 ----DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR-  389 (461)
Q Consensus       315 ----~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~-  389 (461)
                          ..+.+|+|||+|+.-.          +|.+.+.||.|++||. +|.++...+|+.++..||.|.++++....+.. 
T Consensus       447 ~~d~~~~r~y~tgD~gr~l~----------ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~  515 (1032)
T KOG1178|consen  447 TVDGVKARIYRTGDNGRSLK----------NGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTV  515 (1032)
T ss_pred             ccccchhhcccccccceeec----------CCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeecccc
Confidence                2246899999998887          8999999999999998 89999999999999999999999999887655 


Q ss_pred             ---eEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          390 ---PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       390 ---~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                         +.+|+++..+               .+.....+++.++..+|+.|+.|     -.+..+++.|...|||++
T Consensus       516 ~~~l~aFvv~~~~---------------~~~~~~~~i~~~l~~~La~y~vP-----s~~V~l~~vPl~~~GKvD  569 (1032)
T KOG1178|consen  516 GQTLLAFVVERGG---------------SKSVLIRDIRNYLKKELASYMLP-----SLVVPLAKVPLNPNGKVD  569 (1032)
T ss_pred             CceEEEEEeccCC---------------CCchhHHHHHHhhcccccceecc-----eEEEEhhhCCcCCCCCcC
Confidence               8899998743               12334678999999999999855     478889999999999986

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.67  E-value=3.6e-15  Score=156.46  Aligned_cols=331  Identities=17%  Similarity=0.153  Sum_probs=215.1

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHh-hhhhhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~~--   97 (461)
                      ...++.+|++-|.--++|.--++.+||..+++.+........+.+..-++...+.+.+.|+. ++++.++.|+..++.  
T Consensus       939 ~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p 1018 (1363)
T KOG3628|consen  939 LNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISP 1018 (1363)
T ss_pred             ccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCH
Confidence            34668899999999999999999999999999999999998888888888888777777765 477889999998775  


Q ss_pred             -----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           98 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        98 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                           ++..+++.++++++.-.+.+-..+..+.........+......           +       ....++       
T Consensus      1019 ~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gn-----------n-------~s~s~v------- 1073 (1363)
T KOG3628|consen 1019 MDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGN-----------N-------TSSSIV------- 1073 (1363)
T ss_pred             HHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhc-----------c-------ccccee-------
Confidence                 4678899999999988888777776665543332211111100           0       000111       


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCc-eeEEec-cCCCchhHHHHHHH-hCCeeeeec----ccC
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSG-GGSLPMHIDLFYEA-IGVKVQVGY----GLT  245 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~i~~g-g~~l~~~~~~~~~~-~~~~v~~~Y----G~t  245 (461)
                                      .....+.+.+...++.+....+++. +.+-+. +.++.+.+  .++. .|..-...|    ...
T Consensus      1074 ----------------v~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~I--c~r~~sg~~Pt~~y~D~raLR 1135 (1363)
T KOG3628|consen 1074 ----------------VPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFI--CLRSYSGPEPTTVYLDARALR 1135 (1363)
T ss_pred             ----------------eecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHh--hhccccCCCCcceeechhhhh
Confidence                            1112233445555566666655542 111110 11111110  0010 011100111    011


Q ss_pred             CCcccee-ccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCc-hhhcccc---------
Q 012526          246 ESSPVIA-ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNP-SATKQAL---------  314 (461)
Q Consensus       246 E~~~~~~-~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~-~~~~~~f---------  314 (461)
                      |.-.-.. ...+........|...+++++.|++||+..+|..|+.||||+.+.+-+.+|+.-. +.....|         
T Consensus      1136 ~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~ 1215 (1363)
T KOG3628|consen 1136 EGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDL 1215 (1363)
T ss_pred             ccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhcccccc
Confidence            1000000 0011112223458889999999999999999999999999999999988887531 1222222         


Q ss_pred             CCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhc-CccccEEEEEeCCCCeeEEE
Q 012526          315 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQRRPGAI  393 (461)
Q Consensus       315 ~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~-~p~V~~a~V~~~~~~~~~a~  393 (461)
                      ....|-||||+|++....+..........+|++|-.++.+.+ +|.+.+|.+||+.+.+ ||.|..|+|+.-.. .++++
T Consensus      1216 ~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-lvVvv 1293 (1363)
T KOG3628|consen 1216 LGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERVHPSIGGCAVFQATG-LVVVV 1293 (1363)
T ss_pred             ccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHhcccccceeeEeeCC-eEEEE
Confidence            234699999999998644444444445579999999999998 9999999999999997 99999999998653 33333


Q ss_pred             EEc
Q 012526          394 IVP  396 (461)
Q Consensus       394 vv~  396 (461)
                      +..
T Consensus      1294 iE~ 1296 (1363)
T KOG3628|consen 1294 IEC 1296 (1363)
T ss_pred             EEe
Confidence            433

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.60  E-value=2.9e-15  Score=147.64  Aligned_cols=104  Identities=14%  Similarity=0.102  Sum_probs=90.4

Q ss_pred             CCCcccCCceEee-ccCCCCCcccccCCeEEEeccccceEEcCCc---eeecchhHHHHHhcCccccEEEEEeCCCC---
Q 012526          316 EDGWLNTGDIGWI-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTG---ENVEPLELEEAALRSSLIRQIVVIGQDQR---  388 (461)
Q Consensus       316 ~~~~~~TGDlg~~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G---~~v~~~eIE~~l~~~p~V~~a~V~~~~~~---  388 (461)
                      .+|||+|||+|++ ++          +|+++|.||.+      +|   ++|+|. ||++|.+||+|.+|+|++.+++   
T Consensus       207 ~dgW~~TGDlg~~~d~----------dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~g  269 (365)
T PRK09188        207 SRIWLATGKKVYNFIT----------RGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKG  269 (365)
T ss_pred             cCcEEeCCCEEEEEcC----------CCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCC
Confidence            5899999999998 57          89999999986      57   799999 9999999999999999998765   


Q ss_pred             -eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          389 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       389 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                       .+.|+|++.                  ...+.++++++++++|+. +     .|++|.++++.|.+.|||+.
T Consensus       270 e~v~A~Vv~~------------------~~~~~~el~~~l~~~L~~-k-----vP~~v~~v~~lP~t~~GKi~  318 (365)
T PRK09188        270 VGLYAFVEAE------------------LPADEKSLRARLAGAKPP-K-----PPEHIQPVAALPRDADGTVR  318 (365)
T ss_pred             eEEEEEEEEC------------------CCCCHHHHHHHHHhhchh-c-----CCcEEEEECCCCCCCCCCcc
Confidence             455777764                  134668999999999998 7     66789999999999999973

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.29  E-value=4.2e-10  Score=111.20  Aligned_cols=260  Identities=21%  Similarity=0.268  Sum_probs=147.2

Q ss_pred             ccccccccccCcccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhc----CCCCC-cEEEEECChhh-
Q 012526            4 SLPILTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV----PAENG-DKFLSMLPPWH-   77 (461)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~----~~~~~-d~~~~~~p~~~-   77 (461)
                      +.|++ |....+.+.-...+++++..++.||||||.|--+.+.+..+..+...+...+    +.... -.++...|-.. 
T Consensus        69 dIP~l-Pi~~FK~~~L~S~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~  147 (365)
T PF04443_consen   69 DIPFL-PIRFFKEHELLSVPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPEN  147 (365)
T ss_pred             HCCcc-hHHHHhhceeeecChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCccc
Confidence            34442 3334444555555677888899999999998777777666655443333222    22211 22333334211 


Q ss_pred             ---hHHHhh-hhhhhccCeEEEE----cchhhHHHHH----hHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHH
Q 012526           78 ---VYERAC-GYFIFSRGIELMY----TAVRNLKDDL----QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARA  145 (461)
Q Consensus        78 ---~~~~~~-~~~~l~~G~~~~~----~~~~~~~~~i----~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  145 (461)
                         +..... .......+....+    ++.+.++..+    .+.++..++++|.++-.++...++....           
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~-----------  216 (365)
T PF04443_consen  148 RNSFSARYAGILGELFFGSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR-----------  216 (365)
T ss_pred             ccchHHHHHHHHhhcccCceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc-----------
Confidence               111111 1112233444222    1344444433    4567888999888777666655443211           


Q ss_pred             HHHHhHHHHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEecc----
Q 012526          146 LIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGG----  220 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~gg----  220 (461)
                                                                                    -.+. ..+.+-.||    
T Consensus       217 --------------------------------------------------------------~~L~~~s~vi~~GGwK~~  234 (365)
T PF04443_consen  217 --------------------------------------------------------------FRLPKGSIVIHGGGWKGR  234 (365)
T ss_pred             --------------------------------------------------------------ccCCCCCEEEeCCCCCcc
Confidence                                                                          0111 113344443    


Q ss_pred             --CCCc-hhHH-HHHHHhCC----eeeeecccCCCccceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEE
Q 012526          221 --GSLP-MHID-LFYEAIGV----KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV  292 (461)
Q Consensus       221 --~~l~-~~~~-~~~~~~~~----~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel  292 (461)
                        +.++ ++.. .+.+.+|+    ++++.||+||.....+.+..     +.  .+.|.. +.+.|+++-++++.|+.|-|
T Consensus       235 ~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~-----~~--~~~p~w-V~iRDp~tl~~~~~Ge~Gli  306 (365)
T PF04443_consen  235 RKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH-----GH--FHVPPW-VIIRDPETLEPLPPGETGLI  306 (365)
T ss_pred             ccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC-----Cc--ccCCCe-EEEECCCCCcCCCCCCeeEE
Confidence              2343 3443 34455787    69999999997655443311     11  123333 77779999999999999999


Q ss_pred             EEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeec
Q 012526          293 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  363 (461)
Q Consensus       293 ~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  363 (461)
                      -+-.+... .|             .+..-|.|+|.+..+++|+|  .....+.|+||.+..=.  +|+...
T Consensus       307 ~vidl~~~-s~-------------p~~IlTeDlGvl~~~~~c~c--r~g~~f~vlGR~~~ae~--RGCs~~  359 (365)
T PF04443_consen  307 QVIDLANT-SY-------------PGFILTEDLGVLHGDDDCGC--RKGKYFEVLGRADGAEI--RGCSLT  359 (365)
T ss_pred             EEEccccc-CC-------------CcEEEEcceeeecCCCCCCC--ccCCEEEEEeCCCCCcc--CCcHHH
Confidence            88765432 11             23367999999888777777  22358999999876542  576543

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.15  E-value=7e-10  Score=117.40  Aligned_cols=293  Identities=15%  Similarity=0.184  Sum_probs=188.1

Q ss_pred             eEEEEecCCCCCCchhheechHHHHHHHHHHh--------------------hhcCCCCCcEEEEECChhhhHHHhhh-h
Q 012526           27 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--------------------DIVPAENGDKFLSMLPPWHVYERACG-Y   85 (461)
Q Consensus        27 ~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~--------------------~~~~~~~~d~~~~~~p~~~~~~~~~~-~   85 (461)
                      .++|-||++++|.--|++++|. ++.+.+.+.                    ..++....+.++..+.+....|++++ +
T Consensus       252 ~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~  330 (1363)
T KOG3628|consen  252 YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVL  330 (1363)
T ss_pred             eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhh
Confidence            7899999999999999999998 433322211                    11234556777777888888888875 4


Q ss_pred             hhhccCeEEEEc------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHH
Q 012526           86 FIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  159 (461)
Q Consensus        86 ~~l~~G~~~~~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (461)
                      .++..|.+.+..      ++..+...+.++|.+++..-...+......+++...                          
T Consensus       331 ~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~--------------------------  384 (1363)
T KOG3628|consen  331 VALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPK--------------------------  384 (1363)
T ss_pred             hhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcc--------------------------
Confidence            568888888774      467889999999999988765555444333322111                          


Q ss_pred             hcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhcCCceeEEeccCCCchhH-----HHHHHH
Q 012526          160 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ-SAIGISKAGVSGGGSLPMHI-----DLFYEA  233 (461)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~i~~gg~~l~~~~-----~~~~~~  233 (461)
                                                             ..+++++.. -.++++|.+.+.-..+..+.     ..|++.
T Consensus       385 ---------------------------------------a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~  425 (1363)
T KOG3628|consen  385 ---------------------------------------ATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKP  425 (1363)
T ss_pred             ---------------------------------------cccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhccc
Confidence                                                   011222222 24455566666665554443     222221


Q ss_pred             ------------------hCCeeeeecccCCCccceeccCCCC------------------------------CCccccc
Q 012526          234 ------------------IGVKVQVGYGLTESSPVIAARRPTC------------------------------NVLGSVG  265 (461)
Q Consensus       234 ------------------~~~~v~~~YG~tE~~~~~~~~~~~~------------------------------~~~~~~G  265 (461)
                                        +|.-....-+++|.+......+...                              .....+|
T Consensus       426 lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~  505 (1363)
T KOG3628|consen  426 LGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVL  505 (1363)
T ss_pred             ccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccc
Confidence                              1222222233444443332221100                              0112345


Q ss_pred             cCCCC-eEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccC------------CCCcccCCceEeeccCC
Q 012526          266 HPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------------EDGWLNTGDIGWIAPHH  332 (461)
Q Consensus       266 ~~~~~-~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~------------~~~~~~TGDlg~~~~~~  332 (461)
                      ...++ +.+.+++++++..|.++++|||||.++++..+||..+..|...|.            ...+.|||-+|++.+  
T Consensus       506 ~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~--  583 (1363)
T KOG3628|consen  506 CIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHN--  583 (1363)
T ss_pred             eecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeC--
Confidence            55554 678889999999999999999999999999999999888888771            124899999999996  


Q ss_pred             CCCcccccCCeEEEeccccceEEcCCceeecchh----------HHHHHhcCccccEEEEEeCCCCeeEEEEEcCh
Q 012526          333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE----------LEEAALRSSLIRQIVVIGQDQRRPGAIIVPDK  398 (461)
Q Consensus       333 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~e----------IE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~  398 (461)
                               |.++++|-++|++..-.|...+..+          |+.+.+..+.|.++.++-  ++...++++-++
T Consensus       584 ---------gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~--~E~~~Vv~~esP  648 (1363)
T KOG3628|consen  584 ---------GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE--DEHIVVVVLESP  648 (1363)
T ss_pred             ---------CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee--cceEEEEEEeCc
Confidence                     7788777666665433565555444          445556688899999987  555555555443

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.59  E-value=2.7e-06  Score=88.93  Aligned_cols=158  Identities=20%  Similarity=0.248  Sum_probs=89.8

Q ss_pred             CCce-eEEeccCCCchhHHHHHHHhC-Ce-eeeecccCCCccceeccCCCCCCccccccCCCCeEEEEEeCCC-------
Q 012526          211 GISK-AGVSGGGSLPMHIDLFYEAIG-VK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAET-------  280 (461)
Q Consensus       211 ~~~~-~i~~gg~~l~~~~~~~~~~~~-~~-v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~-------  280 (461)
                      ..++ ....+|+.+.+-...+.+.++ .. +-.+|++||+-...... ++.  .+..-.|-.+ -.+.++.+.       
T Consensus       267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~~~--~~~~l~~~~~-ffEFip~~~~~~~~~~  342 (528)
T PF03321_consen  267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-PED--PGYVLAPDSG-FFEFIPVDEDEQNPSE  342 (528)
T ss_dssp             TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--CCC----EEE-TTSS-EEEEEE-STT------
T ss_pred             CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-CCC--CceEeecCCe-EEEEEeccCCcccccC
Confidence            3446 456666777777777777774 33 44589999964333222 111  1111112222 345555432       


Q ss_pred             -CC-----cCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCC--eEEEeccccc
Q 012526          281 -NE-----VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG--VLVLEGRAKD  352 (461)
Q Consensus       281 -~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G--~l~i~GR~~d  352 (461)
                       .+     .+..|+.=||+|+..   .|.|.              |+.||++++....        ++  .+.|+||.+.
T Consensus       343 ~~~~l~~~ele~G~~YelviTt~---~GLyR--------------Y~iGDvVrv~gf~--------~~~P~i~F~~R~~~  397 (528)
T PF03321_consen  343 QPKTLLLHELEVGEEYELVITTN---SGLYR--------------YRIGDVVRVTGFY--------NQTPRIEFVGRRGQ  397 (528)
T ss_dssp             -SSSEEGGG--TT-EEEEEEEST---TS-SS--------------EEECEEEEEEEEE--------TTEEEEEEEEETTE
T ss_pred             CCceecHHHhcCCCeEEEEEecc---cceee--------------eecCCEEEEeecc--------CCCcEEEEeccCCc
Confidence             12     245667778888853   34432              9999999887521        34  6999999999


Q ss_pred             eEEcCCceeecchhHHHHHhcC-----ccccEEEEEeC----CCCeeEEEEEcCh
Q 012526          353 TIVLSTGENVEPLELEEAALRS-----SLIRQIVVIGQ----DQRRPGAIIVPDK  398 (461)
Q Consensus       353 ~i~~~~G~~v~~~eIE~~l~~~-----p~V~~a~V~~~----~~~~~~a~vv~~~  398 (461)
                      ++.+ .|++++-.+|++++.+.     -.+.+..+...    ..+....++....
T Consensus       398 ~l~l-~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~  451 (528)
T PF03321_consen  398 VLSL-FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEG  451 (528)
T ss_dssp             EE-S-SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS
T ss_pred             eeec-ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCC
Confidence            9998 79999999999999874     34667777765    2345555665543

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=98.55  E-value=2.6e-07  Score=85.96  Aligned_cols=78  Identities=13%  Similarity=-0.004  Sum_probs=64.8

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE---
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY---   96 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~---   96 (461)
                      ...++|++.++||||+         +|++++.+.    ...+++++|+++ .+|++|.+|+.. .+.++..|+++++   
T Consensus       146 ~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~r  211 (227)
T TIGR03089       146 PPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTH  211 (227)
T ss_pred             CCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecC
Confidence            4567899999999986         566655543    556789999999 999999999976 4566999999888   


Q ss_pred             cchhhHHHHHhHhCCc
Q 012526           97 TAVRNLKDDLQRYQPH  112 (461)
Q Consensus        97 ~~~~~~~~~i~~~~~t  112 (461)
                      +++..+++.|+++|+|
T Consensus       212 Fd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       212 PDPARLDQIAETERVT  227 (227)
T ss_pred             CCHHHHHHHHHhhcCC
Confidence            4799999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.39  E-value=6.5e-07  Score=67.38  Aligned_cols=68  Identities=18%  Similarity=0.102  Sum_probs=53.0

Q ss_pred             hHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCc
Q 012526          366 ELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQ  441 (461)
Q Consensus       366 eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  441 (461)
                      |||++|.+||+|.+|+|++.+++    .+.|++++                      +.++++++++++|+.|+.|.  .
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~----------------------~~~~i~~~~~~~l~~~~~P~--~   56 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL----------------------DEEEIRDHLRDKLPPYMVPR--R   56 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE----------------------HHHHHHHHHHHHS-GGGS-S--E
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe----------------------eecccccchhhhCCCcceee--E
Confidence            79999999999999999999754    66788876                      12889999999999999662  1


Q ss_pred             cccEEEecC-CCCCCCCc
Q 012526          442 IGPIHVVDE-PFTVNFLC  458 (461)
Q Consensus       442 ~~~~~~~~~-~~~~~~g~  458 (461)
                       ..|..+++ .|.+.|||
T Consensus        57 -~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen   57 -IRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             -EEEEEESSSEEBETTSS
T ss_pred             -EEEccccCcCCCCCCCC
Confidence             34444466 89999997

...

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.96  E-value=0.00098  Score=70.28  Aligned_cols=77  Identities=12%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             CCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecc
Q 012526          285 PAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEP  364 (461)
Q Consensus       285 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~  364 (461)
                      ..|+.=+|+|+.   ..|.|.              |+.||.+++......      --.|.|+||.+..+.+ .|+++.-
T Consensus       392 e~G~~Y~lVvTT---~~GLyR--------------Y~iGDvVrvtgf~~~------~P~i~F~gR~~~~ls~-~GEKl~e  447 (597)
T PLN02249        392 EVGKEYELVITT---YAGLYR--------------YRVGDILRVTGFHNS------APQFKFIRRKNVLLSI-ESDKTDE  447 (597)
T ss_pred             CCCCeEEEEEEc---ccceeE--------------eecCCEEEEeeccCC------CcEEEEEccCCcceec-ccccCCH
Confidence            455666777764   334332              999999998763211      2468999999999997 8999999


Q ss_pred             hhHHHHHhc---C-----ccccEEEEEeC
Q 012526          365 LELEEAALR---S-----SLIRQIVVIGQ  385 (461)
Q Consensus       365 ~eIE~~l~~---~-----p~V~~a~V~~~  385 (461)
                      .+++.++.+   .     -.|.|..++..
T Consensus       448 ~~v~~Av~~a~~~~~~~~~~v~eft~~~~  476 (597)
T PLN02249        448 ADLQKAVENASRLLAEQGTRVIEYTSYAE  476 (597)
T ss_pred             HHHHHHHHHHHHHhhhcCceEEEeEEecC
Confidence            999998887   1     23456666543

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.94  E-value=0.0016  Score=68.26  Aligned_cols=67  Identities=13%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             CCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeec
Q 012526          284 LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  363 (461)
Q Consensus       284 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  363 (461)
                      +..|+.=||+|+.   +.|.+.              ||.||+.+....+.      ..-.+.|++|.+.+..+ .|+|.+
T Consensus       398 vk~G~~YelVvTt---~~GLYR--------------YrlGDvv~V~GF~n------~~P~~~Fv~R~~~vlsi-~gEK~t  453 (606)
T PLN02247        398 VKVGHYYELVVTT---FTGLYR--------------YRVGDILMVTGFYN------NAPQFRFVQRRNVVLSI-DTDKTN  453 (606)
T ss_pred             ccCCCeEEEEEEe---cCceEE--------------EecCCEEEEeeecC------CCceEEEEecCCceeec-ccccCC
Confidence            3456666788774   333332              99999998775221      13469999999999998 899999


Q ss_pred             chhHHHHHhcC
Q 012526          364 PLELEEAALRS  374 (461)
Q Consensus       364 ~~eIE~~l~~~  374 (461)
                      -.++..++.+.
T Consensus       454 E~~l~~Av~~a  464 (606)
T PLN02247        454 EEDLLKAVTQA  464 (606)
T ss_pred             HHHHHHHHHHH
Confidence            99998888773

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.82  E-value=0.003  Score=66.18  Aligned_cols=67  Identities=15%  Similarity=0.256  Sum_probs=49.0

Q ss_pred             CCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeec
Q 012526          284 LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  363 (461)
Q Consensus       284 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  363 (461)
                      +..|+.=||+|+.   +.|.+.              |+.||+.+....+.      ..-.+.|++|.+.+..+ .|+|.+
T Consensus       404 v~~G~~YelvvTt---~~GLyR--------------YrlGDvv~V~Gf~n------~~P~~~Fv~R~~~~lsi-~gEK~t  459 (612)
T PLN02620        404 VKLGQEYELVVTT---YAGLYR--------------YRVGDVLRVAGFKN------KAPQFSFICRKNVVLSI-DSDKTD  459 (612)
T ss_pred             ccCCCeEEEEEEe---cCceEE--------------EecCCEEEEeeecC------CCceEEEEeecCceeec-ccccCC
Confidence            3556666888874   333332              99999998775221      13469999999999997 899999


Q ss_pred             chhHHHHHhcC
Q 012526          364 PLELEEAALRS  374 (461)
Q Consensus       364 ~~eIE~~l~~~  374 (461)
                      -.++..++.+.
T Consensus       460 E~~l~~Av~~a  470 (612)
T PLN02620        460 EVELQNAVKNA  470 (612)
T ss_pred             HHHHHHHHHHH
Confidence            99998887763

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=92.99  E-value=0.22  Score=39.34  Aligned_cols=75  Identities=12%  Similarity=0.071  Sum_probs=46.4

Q ss_pred             ceeecchhHHHHHhcCcccc-EEEEEeC---CCCeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHH
Q 012526          359 GENVEPLELEEAALRSSLIR-QIVVIGQ---DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW  434 (461)
Q Consensus       359 G~~v~~~eIE~~l~~~p~V~-~a~V~~~---~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  434 (461)
                      |.+|+|.+||++|.++|++. +..++-.   ..+.+...|...++             ........+++.+.+.++|...
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~-------------~~~~~~~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPG-------------FSDDAEDLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTT-------------CCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCc-------------cCcchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999998 5555533   23456666666532             0001123567777888877776


Q ss_pred             hccCCCccccEEEecC
Q 012526          435 TSKCSFQIGPIHVVDE  450 (461)
Q Consensus       435 ~~~~~~~~~~~~~~~~  450 (461)
                      ..-   .+ ++.+++.
T Consensus        68 lgv---~~-~V~lv~~   79 (96)
T PF14535_consen   68 LGV---RP-EVELVPP   79 (96)
T ss_dssp             HSS----E-EEEEE-T
T ss_pred             cCc---eE-EEEEECC
Confidence            422   22 6666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	461
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-14
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		4e-14
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-13
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-13
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-13
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		3e-12
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-11
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		8e-11
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		8e-10
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		3e-09
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-08
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-08
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		3e-08
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		6e-07
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		6e-07
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		9e-07
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-06
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-06
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		2e-06
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		2e-06
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		4e-06
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-05
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-05
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-05
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		9e-05
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		9e-05
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		1e-04
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-04
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		3e-04
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		3e-04
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		5e-04
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		6e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 237 KVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 291
           K+  GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD +T + L     G 
Sbjct: 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431
Query: 292 VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 322
           + +RG Q+M+GY  NP+AT + +D+DGWL+T
Sbjct: 432 ICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 241 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 295
           GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD ET   LP    G + +R
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIR 388
Query: 296 GSQVMQGYFKNPSATKQALDEDGWLNTG 323
           G Q+M+GY  +P AT + +D++GWL+TG
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKEGWLHTG 416

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 238 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGP 400
Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 238 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 238 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 400
Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 238 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 238 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 238 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 238 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 238 VQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 296
           ++ GYGLTE+ S +I   R   +  G+ G  +     KIVD +T + L    +G + V+G
Sbjct: 370 IRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKG 429
Query: 297 SQVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
             +M+GY  NP AT   +D+DGWL++GDI +
Sbjct: 430 PMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 217 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA-----------ARRPTCNVLGSVG 265
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+            +      +    G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358
Query: 266 HPINHTEIKIVDAETNEVLPAGSK-GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 324
            PI    +++ D E   V   G   G V+++G  +  GY+ N  AT+ AL  DG+  TGD
Sbjct: 359 LPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 418
Query: 325 IG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVI 383
           I  W    +           + ++ R KD ++ S GE +              +++  V+
Sbjct: 419 IAVWDEEGY-----------VEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVV 466
Query: 384 G----QDQRRPGAIIVPDKEE 400
                + Q RP A++VP  E+
Sbjct: 467 AIPHPKWQERPLAVVVPRGEK 487

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 221 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 277
           GS P+  D   E     G  V   YG TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 278 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 337
            ET + LP G  G ++V+G  V +GY++ P  TK    +DG+  TGD+G I         
Sbjct: 336 PETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKI--------- 386
Query: 338 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AI 393
                V +L GR KD +V++ G NV P            + +  VIG      G    A+
Sbjct: 387 DERGYVHIL-GRGKD-LVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV 444
Query: 394 IVPDKEEVLMAAKRLSIVHADASELSKEK 422
           +V DK   +  A+   ++H    +L+K K
Sbjct: 445 VVRDKGATIDEAQ---VLHGLDGQLAKFK 470

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 217 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 274
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 290 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 349
Query: 275 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXX 334
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I      
Sbjct: 350 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGY- 405
Query: 335 XXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG--- 391
                    L ++ R KD I+ S GENV P            + ++ VIG    + G   
Sbjct: 406 ---------LYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIA 455
Query: 392 -AIIVPDKEEV 401
            AI+V D+ EV
Sbjct: 456 AAIVVADQNEV 466

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 195 HLLAEKL-VYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 252
           H +AE L    ++  A+  ++  VSG  +LP+H  +    A G +V   YG+TE+    +
Sbjct: 255 HRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS 314
Query: 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSAT 310
            R       G+VG P+   E+++V+ +   +  L   S G ++VRG  +   Y   P AT
Sbjct: 315 VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 311 KQALDEDGWLNTGDI 325
             A  EDG+  TGD+
Sbjct: 375 AAAFTEDGFFRTGDM 389

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 221 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 277
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 278 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 221 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 277
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 278 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 221 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 277
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 278 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 263 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 322
           S G P+    + +VDAE +  LP G  G + +RG  V +GY+ N +AT+ A   +GW +T
Sbjct: 322 SAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHT 379
Query: 323 GDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLST-GENVEPXXXXXXXXRSSLIRQIV 381
           GD+G                 L   GRA +  ++ T GENV P        +   I   V
Sbjct: 380 GDMGRF----------DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429
Query: 382 VIG 384
           VIG
Sbjct: 430 VIG 432

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 235 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 292
           G KV  GYG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVN-GYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 293 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 351
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 352 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 404
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 235 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 292
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAXNSLYXRQPKT---GTEXAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 293 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 351
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 352 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 404
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DXII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 190 ILWPLHLLAEKLVYK-KIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS 248
           I+W    L +   YK +IQS   +   G S   SL   +    E +  K+Q  +G+ E  
Sbjct: 293 IMW----LEKAAQYKDQIQSLKLLQVGGASFPESLARQVP---EVLNCKLQQVFGMAEGL 345
Query: 249 PVIAARRPTCN--VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK 305
            V   R    +  +  + G PI+   EIKIVD +  EV P G  G++  RG     GY++
Sbjct: 346 -VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQ 403
Query: 306 NPSATKQALDEDGWLNTGDIGWIAP 330
           +P    Q  DED +  +GD+    P
Sbjct: 404 SPEHNSQVFDEDNYYYSGDLVQRTP 428

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 235 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 292
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 293 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 351
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 352 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 404
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 235 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 292
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 293 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 351
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 352 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 404
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 235 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 292
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 293 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 351
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVP 402
Query: 352 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 404
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 235 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 292
           G KV   YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVN-AYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 293 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 351
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 352 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 404
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 217 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 274
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 276 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 335
Query: 275 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I
Sbjct: 336 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 386

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 242 YGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 300
           +G TE+ P +    P   +   + G P +  E+K++  E    L  G  G + +RG  + 
Sbjct: 335 WGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIF 394
Query: 301 QGYFKNPSATKQA--LDEDG--WLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVL 356
           +GY+K     ++    DE G  +  TGD+G+I               L  + R K+ I  
Sbjct: 395 KGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEE----------GFLHFQDRVKEVIKY 444
Query: 357 STGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADAS 416
             G  + P        +   +  + VIG+     G   VP    VL    R  +   D  
Sbjct: 445 K-GYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGE--VPKAFIVLKPEYRGKVDEEDII 501
Query: 417 ELSKEK 422
           E  +E+
Sbjct: 502 EWVRER 507

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 21  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 77
           +I S+DIA   YTSG+T +PKGV ++H NLL  +  ++      +     S LPP H
Sbjct: 163 SIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHH 219

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 234 IGVKVQVGYGLTESSPVIAARR---PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSK 289
           IG ++Q  +G+ E   ++   R       ++ + G+P+    E+ + DAE N  LP G  
Sbjct: 326 IGCQLQQVFGMAEG--LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP-LPQGEV 382
Query: 290 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGR 349
           G +  RG    +GY+K+P     A D +G+  +GD+  I P             + ++GR
Sbjct: 383 GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE----------GYITVQGR 432
Query: 350 AKDTI 354
            KD I
Sbjct: 433 EKDQI 437

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL---SMLPPWHVY 79
           G++D+A  +YTSGTTGNPKGV + H N+L  +     +      D++L   S+   + V+
Sbjct: 173 GAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVW 232
Query: 80  ERACGYFIFSRGIELM 95
           E    +  FS G EL+
Sbjct: 233 EI---WGAFSTGAELV 245

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-YDIVPAENGDKFLSMLPPWH 77
           +DIA   YTSG+T  P+GV++TH+ +   +R++ +D +    GD+ +S LP +H
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYH 228

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 215 AGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 274
           A V+G    P   + F E  G+K+  G+G TE+   IA         GS+G P    +I+
Sbjct: 346 AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIE 405
Query: 275 IVDAETN--EVLPAGSKGIVKVRGSQV--MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
           ++D +    EV   G   I  + G  V     Y K+P  T++    DG+ +TGD+ W+  
Sbjct: 406 LMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM-- 462
Query: 331 HHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRP 390
                        L   GRA D I+ ++G  V P        +   + +  + G      
Sbjct: 463 --------DEDGYLWFVGRADD-IIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVR 513
Query: 391 GAII 394
           G +I
Sbjct: 514 GQVI 517

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 14/171 (8%)
Query: 218 SGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV 276
           S G +LP  I + F    G ++  G G TE   +  + R      G+ G P+   EI++ 
Sbjct: 307 SAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELR 366
Query: 277 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXX 336
           D E    +P G  G + ++G      Y+ N   ++     + W+ +GD     P+     
Sbjct: 367 D-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPN----- 419
Query: 337 XXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQ 387
                   V  GR+ D + +S G+ V P        +   + +  V+G D 
Sbjct: 420 -----GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 219 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 278
           G   LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D 
Sbjct: 331 GESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDD 390
Query: 279 ETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHX 333
           + N VLP G++G + +R   +       GY  NP  T   +  D WL  GD G       
Sbjct: 391 KGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG------- 441
Query: 334 XXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAI 393
                         GRA D I+ S+G  + P            + +  VI       G +
Sbjct: 442 ---IKDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497
Query: 394 IVPDKEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 433
           +   K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 498 V---KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 219 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 278
           G   LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D 
Sbjct: 331 GESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDD 390
Query: 279 ETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHX 333
           + N VLP G++G + +R   +       GY  NP  T   +  D WL  GD G       
Sbjct: 391 KGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG------- 441
Query: 334 XXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAI 393
                         GRA D I+ S+G  + P            + +  VI       G +
Sbjct: 442 ---IKDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497
Query: 394 IVPDKEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 433
           +   K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 498 V---KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 24  SDDIATYVYTSGTTGNPKGVMLTHKNL 50
           S D+A  +YTSGTTGNPKG ML HK +
Sbjct: 181 STDLAYVIYTSGTTGNPKGTMLEHKGI 207

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 256 PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 314
           P   ++ + G P++ + E ++ D    +V P G  G +  RG   ++GY+K       + 
Sbjct: 345 PEEIIVNTQGKPMSPYDESRVWDDHDRDVKP-GETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 315 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 354
            EDG+  TGDI                  +V+EGRAKD I
Sbjct: 404 TEDGFYRTGDI----------VRLTRDGYIVVEGRAKDQI 433

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-43
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-15
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-39
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	9e-16
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	2e-38
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-14
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-38
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-14
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	4e-38
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-14
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-37
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-12
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-36
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-11
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	6e-36
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-11
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	8e-36
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-11
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-35
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-16
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	5e-35
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-17
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-34
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	3e-14
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-34
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	7e-16
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-33
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-16
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-32
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-15
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	3e-31
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	5e-07
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-22
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-12
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-20
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-14
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-15
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	6e-07
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-15
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	4e-13
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	3e-12
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-05
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	4e-11
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	5e-09
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-09
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	4e-08
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	6e-08
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  159 bits (404), Expect = 1e-43
 Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 45/246 (18%)

Query: 214 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 272
           +  +SG   L       +    G  V   YG+TE++   +       V G+VG  +    
Sbjct: 271 RLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330

Query: 273 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 332
            ++ D ET + LP G  G+++V+G  V +GY++ P  TK    +DG+  TGD+G I    
Sbjct: 331 ARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDER- 389

Query: 333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 392
                    G + + GR KD ++ + G NV P E+E        + +  VIG        
Sbjct: 390 ---------GYVHILGRGKDLVI-TGGFNVYPKEIESEIDAMPGVVESAVIG-------- 431

Query: 393 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP------ 444
             VP  +  E + A     +V    + + +         ++         Q+        
Sbjct: 432 --VPHADFGEGVTAV----VVRDKGATIDEA--------QVLHG---LDGQLAKFKMPKK 474

Query: 445 IHVVDE 450
           +  VD+
Sbjct: 475 VIFVDD 480

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 76.9 bits (190), Expect = 3e-15
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 79
              G+DD+A  +YTSGTTG  KG ML+H NL     +L D       D  +  LP +H +
Sbjct: 150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTH 209

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  148 bits (375), Expect = 1e-39
 Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 19/192 (9%)

Query: 216 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 274
            VSG  +LP+H  +    A G +V   YG+TE+    + R       G+VG P+   E++
Sbjct: 277 LVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELR 336

Query: 275 IVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 332
           +V+ +   +  L   S G ++VRG  +   Y   P AT  A  EDG+  TGD+    P  
Sbjct: 337 LVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPD- 395

Query: 333 SRGRSRRCGGVLVLEGR-AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR-- 388
                    G + + GR A D I  S G  +   E+E A L    +R+  V G+ D    
Sbjct: 396 ---------GYVRIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLG 445

Query: 389 -RPGAIIVPDKE 399
            R  A IVP   
Sbjct: 446 ERIVAWIVPADP 457

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 78.4 bits (194), Expect = 9e-16
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 79
           +     D A  VYTSGTTG PKG ++  + L   + +L D       D  +  LP +HV+
Sbjct: 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVH 209

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  145 bits (369), Expect = 2e-38
 Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 37/228 (16%)

Query: 214 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 271
               SGG  L     +          V+ GYGLTE++  I       +  G+ G  +   
Sbjct: 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLF 371

Query: 272 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331
           + K++D +T + L    +G V V+G  +M+GY  NP ATK+ +DE+GWL+TGDIG+    
Sbjct: 372 KAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEE 431

Query: 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 391
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 432 ----------KHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSIFDAGVAG------- 473

Query: 392 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 437
              VPD    E+  A     +V      ++++        E+  + + 
Sbjct: 474 ---VPDPVAGELPGAV----VVLESGKNMTEK--------EVMDYVAS 506

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 75.3 bits (186), Expect = 1e-14
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPW 76
           E    + +A  + +SG+TG PKGV LTH+N+       R          G   L+++P  
Sbjct: 187 EVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFH 246

Query: 77  HVYERACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVY 121
           H +           G  ++    +     LK  LQ Y+   +I VP ++
Sbjct: 247 HGFGMFTTLGYLICGFRVVMLTKFDEETFLK-TLQDYKCTSVILVPTLF 294

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  145 bits (368), Expect = 2e-38
 Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 37/228 (16%)

Query: 214 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 271
               SGG  L     +   +      ++ GYGLTE++  I       +  G+VG  +   
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF 369

Query: 272 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331
           E K+VD +T + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +    
Sbjct: 370 EAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDED 429

Query: 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 391
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 430 ----------EHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAG------- 471

Query: 392 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 437
              +PD +  E+  A     +V      ++++        E+  + + 
Sbjct: 472 ---LPDDDAGELPAAV----VVLEHGKTMTEK--------EIVDYVAS 504

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHV 78
                IA  + +SG+TG PKGV L H+         R              LS++P  H 
Sbjct: 187 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 246

Query: 79  YERACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVY 121
           +           G  ++    +     L+  LQ Y+    + VP ++
Sbjct: 247 FGMFTTLGYLICGFRVVLMYRFEEELFLR-SLQDYKIQSALLVPTLF 292

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  144 bits (366), Expect = 4e-38
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 42/230 (18%)

Query: 217 VSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 269
            SGG  L   + D         ++  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 270 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 329
           + E+KIVD ET   LP    G + +RG Q+M+GY  +P AT + +D++GWL+TGDIG+I 
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422

Query: 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 389
                         L +  R K+ I    G  V P ELE   +    I    V+G     
Sbjct: 423 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIAHPEISDAAVVG----- 466

Query: 390 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 437
                + D++  EV +A     +V ++ S+ +++        E++++ SK
Sbjct: 467 -----LKDEDAGEVPVAF----VVKSEKSQATED--------EIKQYISK 499

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL----LHQIRSLYDIVPAENGDK 68
                    I  DD+    Y+SGTTG PKGVMLTHK L      Q+      +   + D 
Sbjct: 166 DENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDV 225

Query: 69  FLSMLPPWHVY-ERACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVY 121
            L +LP +H+Y   +        G  ++    +     L   +++Y+      VP V 
Sbjct: 226 ILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLG-LIEKYKVSIAPVVPPVM 282

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  141 bits (358), Expect = 3e-37
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 43/227 (18%)

Query: 214 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 272
           +     G ++P   ++  ++ +  +    YG TE+   +  R+P     G+   P   +E
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK---TGTEMAPGFFSE 331

Query: 273 IKIVDAET--NEVLPAGSKGIVKVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 329
           ++IV      +E++  G +G + V  S     GY   P AT + L  DGW  T D+    
Sbjct: 332 VRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWT 390

Query: 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 389
           P           G + + GR  D I+ S GEN+ P E+E     +  + ++VVIG     
Sbjct: 391 PE----------GTVRILGRVDDMII-SGGENIHPSEIERVLGTAPGVTEVVVIG----- 434

Query: 390 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 434
                + D+   + + A     +V      LS +         L  +
Sbjct: 435 -----LADQRWGQSVTAC----VVPRLGETLSAD--------ALDTF 464

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG--DKFLSMLPPWHVY 79
                 A   YTSGTTG PK  ++  +    ++  +   V   +G  +  L ++P +HV 
Sbjct: 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209

Query: 80  ERACG 84
                
Sbjct: 210 GFFAV 214

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  140 bits (355), Expect = 2e-36
 Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 19/199 (9%)

Query: 214 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 270
           K    GG S P  +     E +  K+Q  +G+ E              +  + G PI+  
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369

Query: 271 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
            EIKIVD +  EV P G  G++  RG     GY+++P    Q  DED +  +GD+    P
Sbjct: 370 DEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP 428

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 388
                      G L + GR KD I    GE +   E+E+  L    +    ++   D++ 
Sbjct: 429 D----------GNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHPEVMHAALVAIVDEQF 477

Query: 389 --RPGAIIVPDKEEVLMAA 405
             +  A IV    E+    
Sbjct: 478 GEKSCAFIVSRNPELKAVV 496

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 19  YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 78
           + +  +D++A +  + G+TG PK +  TH +  + +R+  +I    +  + L  LP  H 
Sbjct: 185 FSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHN 244

Query: 79  Y 79
           +
Sbjct: 245 F 245

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  139 bits (352), Expect = 6e-36
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 29/193 (15%)

Query: 216 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPI 268
              GG  L   +       IG ++Q  +G+ E          T        ++ + G+P+
Sbjct: 307 LQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNY-----TRLDDSAEKIIHTQGYPM 361

Query: 269 N-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
               E+ + DAE N + P G  G +  RG    +GY+K+P     A D +G+  +GD+  
Sbjct: 362 CPDDEVWVADAEGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420

Query: 328 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QD 386
           I P           G + ++GR KD I    GE +   E+E   LR   +    ++  +D
Sbjct: 421 IDPE----------GYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAVIYAALVSMED 469

Query: 387 QR---RPGAIIVP 396
           +    +  A +V 
Sbjct: 470 ELMGEKSCAYLVV 482

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 79
               +D++A +  + GTTG PK +  TH +  + +R   +I       ++L  +P  H Y
Sbjct: 179 TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  138 bits (349), Expect = 8e-36
 Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 19/195 (9%)

Query: 214 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 270
           +    GG               G  +Q  +G+ E          P   ++ + G P++ +
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPY 360

Query: 271 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
            E ++ D    +V   G  G +  RG   ++GY+K       +  EDG+  TGDI  +  
Sbjct: 361 DESRVWDDHDRDV-KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 388
                      G +V+EGRAKD I    GE V   E+E   L    +    ++   DQ  
Sbjct: 420 D----------GYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468

Query: 389 --RPGAIIVPDKEEV 401
             R    I+P  E  
Sbjct: 469 GERSCVFIIPRDEAP 483

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 79
             + S D+A    + G+TG  K +  TH + ++ ++   ++   ++   +L+ LP  H Y
Sbjct: 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNY 236

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  136 bits (344), Expect = 4e-35
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 214 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHT 271
           +  ++GG  +P  +   Y A  ++V  GY LTES                GS G     T
Sbjct: 287 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFT 346

Query: 272 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331
           ++ +   +       G   +V ++   +++ Y+  P AT+ A D +GW  TGDIG I   
Sbjct: 347 DVAVRGDDGVIR-EHGEGEVV-IKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDE 403

Query: 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR- 389
                     G L ++ R KD I+ S GENV P E+E   +    + ++ VIG  D++  
Sbjct: 404 ----------GYLYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452

Query: 390 --PGAIIVPDKEEV 401
               AI+V D+ EV
Sbjct: 453 EIAAAIVVADQNEV 466

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 79.9 bits (198), Expect = 3e-16
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER 81
            G DD    +YTSGTTG+PKGV+ TH+++     S    +     D+ L  LP +HV   
Sbjct: 167 CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL 226

Query: 82  ACGYFIFSRG----IELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 124
               F   RG        + A +     +   +     +VP +   +
Sbjct: 227 TTVIFSAMRGVTLISMPQFDATKVW-SLIVEERVCIGGAVPAILNFM 272

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  135 bits (343), Expect = 5e-35
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 43/231 (18%)

Query: 214 KAGVSGGGSLPMHI-DLFYEAIGVKVQV-------GYGLTESSPVIAARRPT-CNVLGSV 264
           K   +G   +   + +   +    K           +G+TE+ P++    P   +   + 
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358

Query: 265 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL----DEDGWL 320
           G P++  E+K++  E    L  G  G + +RG  + +GY+K     ++          + 
Sbjct: 359 GVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418

Query: 321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 380
            TGD+G+I             G L  + R K+ I    G  + P ELE   ++   +  +
Sbjct: 419 RTGDVGFIDEE----------GFLHFQDRVKEVIKYK-GYTIAPFELEALLMKHEAVMDV 467

Query: 381 VVIGQ-DQRR---PGAIIVP--------DKEEVL------MAA-KRLSIVH 412
            VIG+ D+     P A IV         D+E+++      ++  KR+  V 
Sbjct: 468 AVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVE 518

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 83.0 bits (206), Expect = 3e-17
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 20  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 79
           +    +D+A   YT GTTG PKGVMLTH NL      L       + D  +  +P +H  
Sbjct: 175 KVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSA 234

Query: 80  ERACGYFIFSRGIELMYTAVRNLK---DDLQRYQPHYMISVPLVYETLYSGIQK 130
           E      + + G E +   + N +   +++++Y+  +  +VP       + +  
Sbjct: 235 EFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVP----PALNVLVN 284

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  136 bits (345), Expect = 1e-34
 Identities = 66/214 (30%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 217 VSGGGSLPMH-IDLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 269
            SG   L     D         K+  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVR 409

Query: 270 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 329
           + E+KIVD +T + L     G + +RG Q+M+GY  NP+AT + +D+DGWL+TGDIG I 
Sbjct: 410 NAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469

Query: 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 389
                         L +  R K+ I    G  V P ELE   +    I  + V+      
Sbjct: 470 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIGHPDITDVAVVA----- 513

Query: 390 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKE 421
                + ++   EV +A     +V +  SELS++
Sbjct: 514 -----MKEEAAGEVPVAF----VVKSKDSELSED 538

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL----LHQIRSLYDIVPAENGDK 68
           A +      I  DD+    Y+SGTTG PKGVMLTHK L      Q+      +   + D 
Sbjct: 213 ASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDV 272

Query: 69  FLSMLPPWHVY 79
            L +LP +H+Y
Sbjct: 273 ILCVLPMFHIY 283

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  133 bits (338), Expect = 2e-34
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 217 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIK 274
           + GG  L   +        + +   +G+TE+        P        +VG P  + ++K
Sbjct: 280 LLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339

Query: 275 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 334
           I +            G + ++G+ VM GY      T     E+G+ NTGDI  I      
Sbjct: 340 IKNPNKEGH------GELMIKGANVMNGYLYPTDLTG-TF-ENGYFNTGDIAEIDHE--- 388

Query: 335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR---P 390
                  G +++  R KD I+ S GEN+ P ++E  A +   I   V +G  D      P
Sbjct: 389 -------GYVMIYDRRKDLII-SGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVP 440

Query: 391 GAIIVPDKE 399
               V + +
Sbjct: 441 KLYFVSESD 449

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 78.8 bits (195), Expect = 7e-16
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 8   LTPVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGD 67
           + P  +  +    +   DDIA+ ++TSGTTG  K V  T +N         + +  +   
Sbjct: 146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDT 205

Query: 68  KFLSMLPPWHVYERACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVYET 123
            +LS+LP +H+   +        G  +     + A + L   ++  +  ++  VP     
Sbjct: 206 NWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQIL-TMIKNERITHISLVPQTLNW 264

Query: 124 L 124
           L
Sbjct: 265 L 265

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  131 bits (333), Expect = 1e-33
 Identities = 59/203 (29%), Positives = 85/203 (41%), Gaps = 31/203 (15%)

Query: 214 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVI----AARRPTCNVLGSVGHPI 268
           +A        P  I+ F            +G +E+S +        RP      S G P+
Sbjct: 275 RAVTGLDT--PETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP-----KSAGRPL 327

Query: 269 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328
               + +VDAE   + P G  G + +RG  V +GY+ N +AT+ A   +GW +TGD+G  
Sbjct: 328 FWRTVAVVDAEDRPL-PPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRF 385

Query: 329 APHHSRGRSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ- 385
                        G L   GRA  K+ I  + GENV P E+E A  +   I   VVIG  
Sbjct: 386 DAD----------GYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVP 434

Query: 386 DQRR---PGAIIVPDKEEVLMAA 405
           D +      A+ V    E + A 
Sbjct: 435 DPQWSEAIKAVCVCKPGESIAAD 457

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 80.3 bits (199), Expect = 2e-16
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 22  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER 81
            G+ D    ++T+   G P+G +++  NLL    SL D       D  L MLP +HV   
Sbjct: 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL 216

Query: 82  ACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVYETL 124
                +   G   +    +   +    D++ ++   M     +   +
Sbjct: 217 GLMLTLQQAGGASVIAAKFDPAQAA-RDIEAHKVTVMAEFAPMLGNI 262

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  128 bits (323), Expect = 2e-32
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 17/187 (9%)

Query: 214 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 272
           +   S G +LP    + F    G ++  G G TE   +  + R      G+ G P+   E
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYE 362

Query: 273 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 332
           I++ D   + V P G  G + ++G      Y+ N   ++       W+ +GD     P+ 
Sbjct: 363 IELRDEAGHAV-PDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLPN- 419

Query: 333 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRR-- 389
                    G  V  GR+ D + +S G+ V P+E+E   ++   + +  V+G        
Sbjct: 420 ---------GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVK 469

Query: 390 PGAIIVP 396
             A +V 
Sbjct: 470 TRAFVVL 476

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 76.1 bits (188), Expect = 5e-15
 Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI----RSLYDIVPAENGDK 68
           A    K    G DDIA ++Y+SG+TG PKG + TH NL        + +  I      D 
Sbjct: 171 AAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAE---NDV 227

Query: 69  FLSMLPPWHVYERACG-YFIFSRGIELMYTAVR----NLKDDLQRYQPHYMISVPLVYET 123
             S    +  Y    G  F  S G   +  A R     +   L  ++P     VP    T
Sbjct: 228 VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP----T 283

Query: 124 LYSGI 128
           LY+ +
Sbjct: 284 LYANM 288

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  124 bits (315), Expect = 3e-31
 Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 45/235 (19%)

Query: 217 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG-----------SVG 265
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+       ++               G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358

Query: 266 HPINHTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 323
            PI    +++ D E   V P  G + G V+++G  +  GY+ N  AT+ AL  DG+  TG
Sbjct: 359 LPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 417

Query: 324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 383
           DI                G + ++ R KD I  S GE +  ++LE A +    +++  V+
Sbjct: 418 DIAVWDEE----------GYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKEAAVV 466

Query: 384 GQ-DQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 434
                +   RP A++VP                       +E    LL     KW
Sbjct: 467 AIPHPKWQERPLAVVVP----------------RGEKPTPEELNEHLLKAGFAKW 505

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNL-LHQIR-SLYDIVPAENGDKFLSMLPPWHV 78
                  YT+GTTG PKGV+ +H+ L LH +  SL D       D  L ++P +HV
Sbjct: 176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 231

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 41/210 (19%)

Query: 250 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 309
                 P    L S G+PI   E+KI+D +T         G + V+ + V +GY+  P  
Sbjct: 362 FADDNSPGSYKLVSSGNPI--QEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEE 419

Query: 310 TKQAL--------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 361
           T+ A             +L TGD+G++               L + GR KD I++  G+N
Sbjct: 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIIIY-GKN 467

Query: 362 VEPLELEEAALRSSLIRQIVVIGQDQRRPG---AIIVPDKEEVLMAAKRLSIVHADASEL 418
             P ++E + + S                G   A ++ ++ E      +L+++    +  
Sbjct: 468 HYPQDIEFSLMHSP----------LHHVLGKCAAFVIQEEHE-----YKLTVMCEVKNRF 512

Query: 419 SKEKTISLLYGELRKWTSKCSFQIGPIHVV 448
             +     L+ E+ +   + + Q+    +V
Sbjct: 513 MDDVAQDNLFNEIFELVYE-NHQLEVHTIV 541

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 10  PVIAGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKF 69
            +     ++  +I S+DIA   YTSG+T +PKGVM++H NLL  +  ++      +    
Sbjct: 152 ELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETII 211

Query: 70  LSMLPPWHV 78
            S LPP H 
Sbjct: 212 FSWLPPHHD 220

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 47/222 (21%)

Query: 217 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 275
           V+ G SL P  ++ +    G+ ++  YG TE+       +      G +G   +  +++I
Sbjct: 328 VTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQI 387

Query: 276 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 330
           +D + N + P G++G + +R   +       GY  NP  T   +    +   GD G    
Sbjct: 388 IDDKGNVL-PPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDE 445

Query: 331 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 390
                      G     GRA D I  S+G  + P E+E A +    + +  VI       
Sbjct: 446 D----------GYFQFMGRADDIIN-SSGYRIGPSEVENALMEHPAVVETAVIS------ 488

Query: 391 GAIIVPDKEEVLMAAKRLSIVHA-----------DASELSKE 421
                PD         R  +V A           D  +L+KE
Sbjct: 489 ----SPDPV-------RGEVVKAFVVLASQFLSHDPEQLTKE 519

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 72
           A   +     GS + +   +TSGT+G PK    ++ +L  + +        +  D   ++
Sbjct: 194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTI 253

Query: 73  LPP-W 76
               W
Sbjct: 254 SDTGW 258

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 23/111 (20%)

Query: 250 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 309
                      L S   P     ++IVD++T    P G+ G + V G  V  GY++ P  
Sbjct: 382 AKPCAGGGATSLISYMLPR-SPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDE 440

Query: 310 TKQAL-----------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 349
           +++              E  WL TGD G++             G + + GR
Sbjct: 441 SERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR 480

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD------IVPAENG 66
           A   Y ++       A   YTSG+T  P GV+++H+N+      L               
Sbjct: 171 APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPN 230

Query: 67  DKFLSMLPPWHV 78
              +S LP +H 
Sbjct: 231 SALVSWLPFYHD 242

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)

Query: 227 IDLFYEAIGVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETN 281
            + F E  G+K+  G+G TE+   IA       +P     GS+G P    +I+++D +  
Sbjct: 358 FNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKP-----GSIGKPTPGYKIELMDRDGR 412

Query: 282 EVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 336
                G +G + +         +   Y K+P  T++    DG+ +TGD+ W+        
Sbjct: 413 LC-EVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDED----- 465

Query: 337 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEA 370
                G L   GRA D I  ++G  V P E+E A
Sbjct: 466 -----GYLWFVGRADDII-KTSGYKVGPFEVESA 493

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 33/118 (27%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL------------ 70
            ++DI    ++SGT G PK V   +   L  I +       E+                 
Sbjct: 223 KNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVW 282

Query: 71  -SMLPPWH------VYERACGYFIFSRGIELM--Y---------TAVRNL-KDDLQRY 109
             +   W       VY+     F     +E    Y         T  R L K+DL  Y
Sbjct: 283 GKLYGQWIAGCAVFVYDY--DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHY 338

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 63.2 bits (153), Expect = 4e-11
 Identities = 44/330 (13%), Positives = 75/330 (22%), Gaps = 59/330 (17%)

Query: 23  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 82
            +D       + GTTG PK V+     +   I           G        P      A
Sbjct: 89  PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPG-------RPSGNTLAA 141

Query: 83  CGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVV 142
                   G      A+R             +   P   +   S              V 
Sbjct: 142 IPTGPHIVGAINKERALR------LGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVD 195

Query: 143 ARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLV 202
                         + I            P  L                    LL    V
Sbjct: 196 QVQNT------LMNQDIRFLVTT------PPVL------------------RELLKRPEV 225

Query: 203 YKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-----GVKVQVGYGLTESSPVIAAR-RP 256
             +++ ++        GG    +++D             +    YG T +  V  +    
Sbjct: 226 VLQMKQSL---AQITLGGT--ELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT 280

Query: 257 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV---RGSQVMQGYFKNPSATKQA 313
           + +               +VD+ T + +  G +G V V             +  +A +  
Sbjct: 281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIR-L 339

Query: 314 LDEDGWLNTGDIGWIAPHHSRGRSRRCGGV 343
               G+        I P       +   GV
Sbjct: 340 PGVSGFAGDRLAD-IEPLKISEGRKVIEGV 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 57.1 bits (139), Expect = 5e-09
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 21  TIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 70
              S D+A YV YTSGTTGNPKG ML HK + +      + +     D+  
Sbjct: 178 PSKSTDLA-YVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIG 227

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 56.7 bits (138), Expect = 7e-09
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 21  TIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 70
            +  D+   Y+ YTSG+TGNPKGV +T+  L+   +   +    + G  FL
Sbjct: 140 AVKGDENF-YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 56.7 bits (138), Expect = 8e-09
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 21  TIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 70
            +   +   Y+ YTSG+TGNPKGV ++  NL      +    P   G  FL
Sbjct: 139 WVKEHETF-YIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFL 188

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 23  GSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKF 69
             +  A Y+ YTSG+TG PKGV ++  NL     +   ++        
Sbjct: 173 PENLDA-YLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSL 219

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 22  IGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 70
           I  +D A Y+ YTSGTTG PKG + TH N+   ++ + D +   + D FL
Sbjct: 604 IDPNDPA-YIMYTSGTTGKPKGNITTHANIQGLVKHV-DYMAFSDQDTFL 651

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 21  TIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYD 59
           ++  DD   Y+ +TSGTTG PKGV ++H NLL     + +
Sbjct: 141 SVKGDDNY-YIIFTSGTTGQPKGVQISHDNLLSFTNWMIE 179

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 21  TIGSDDIATYV-YTSGTTGNPKGVMLTHKNL--LHQIRSLYDIVPAENGDKFL 70
              +D IA Y+ ++SGTTG PK +  TH  +  L   +S     P     +FL
Sbjct: 160 CFAADQIA-YINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAP---QMRFL 208

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 64/432 (14%), Positives = 126/432 (29%), Gaps = 136/432 (31%)

Query: 50  LLHQIRSLYDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMYTAVRNLKDDLQR 108
           L+  I++     P+     ++      ++  +    Y + SR ++        L+  L  
Sbjct: 94  LMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SR-LQP----YLKLRQALLE 146

Query: 109 YQPHYMISVPLVYETLY--SGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT 166
            +P   +        +    G  K             +   ++ F         + F L 
Sbjct: 147 LRPAKNV-------LIDGVLGSGKTWVALDVCLS--YKVQCKMDF---------KIFWLN 188

Query: 167 -RNQKQPSYLVALIDWLWARI----------ICAILWPLHLLAEKL-------VYKKIQS 208
            +N   P  ++ ++  L  +I             I   +H +  +L        Y+    
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--- 245

Query: 209 AIGISKAGVSGGGSL--------PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV 260
                         L            + F   +  K+ +    T    V        + 
Sbjct: 246 -------------CLLVLLNVQNAKAWNAF--NLSCKILL---TTRFKQVT-------DF 280

Query: 261 LGS--VGH-PINHTEIKIVDAETNEVLPAGSKGIVKVRGS----QVMQGYFKNPSATKQ- 312
           L +    H  ++H  + +   E   +L    K  +  R      +V+     NP      
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLL---LK-YLDCRPQDLPREVLTT---NPRRLSII 333

Query: 313 -ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 371
                D  L T D  W   H              +      TI+ S+   +EP E  +  
Sbjct: 334 AESIRD-GLATWD-NW--KH--------------VNCDKLTTIIESSLNVLEPAEYRK-- 373

Query: 372 LRSSLIRQIVVIGQDQRRPGAIIV-----PDKEEVLMAAKRL---SIVHADASELSKEKT 423
               +  ++ V       P  ++        K +V++   +L   S+V        KE T
Sbjct: 374 ----MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ----PKEST 425

Query: 424 ISL--LYGELRK 433
           IS+  +Y EL+ 
Sbjct: 426 ISIPSIYLELKV 437

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	461
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.97
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.89
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.87
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.82
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.78

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.8e-54  Score=449.94  Aligned_cols=335  Identities=27%  Similarity=0.403  Sum_probs=289.2

Q ss_pred             cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEE
Q 012526           17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELM   95 (461)
Q Consensus        17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~   95 (461)
                      .......++|+++++|||||||.||+|+++|+++.+++......++++++|++++.+|++|.+++.. .+.++..|++++
T Consensus       147 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~  226 (503)
T 4fuq_A          147 FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMI  226 (503)
T ss_dssp             CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEE
T ss_pred             cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEE
Confidence            3344567899999999999999999999999999999999889999999999999999999999765 456688888888


Q ss_pred             Ec---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           96 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        96 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                      +.   ++..+++.++  ++|++.++|+++..+++.....                                         
T Consensus       227 ~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~-----------------------------------------  263 (503)
T 4fuq_A          227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLT-----------------------------------------  263 (503)
T ss_dssp             ECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCS-----------------------------------------
T ss_pred             EcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCcc-----------------------------------------
Confidence            74   6788888888  8999999999998886521100                                         


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccce
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI  251 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~  251 (461)
                                                        ...++++|.+++||+++++++ +.+.+.++.++++.||+||++..+
T Consensus       264 ----------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  309 (503)
T 4fuq_A          264 ----------------------------------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNT  309 (503)
T ss_dssp             ----------------------------------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECB
T ss_pred             ----------------------------------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCccc
Confidence                                              023445699999999998887 556667799999999999998776


Q ss_pred             eccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          252 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       252 ~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      ..........+++|+|+++++++|+|+++++++++|+.|||+|+|++++.||+++|+.|.+.|..+|||+|||+|++++ 
T Consensus       310 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~-  388 (503)
T 4fuq_A          310 SNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE-  388 (503)
T ss_dssp             CCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT-
T ss_pred             ccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC-
Confidence            5444445567889999999999999988999999999999999999999999999999999998899999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~  407 (461)
                               ||.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.++|++.++        
T Consensus       389 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~--------  450 (503)
T 4fuq_A          389 ---------RGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG--------  450 (503)
T ss_dssp             ---------TCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--------
T ss_pred             ---------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC--------
Confidence                     8999999999999997 8999999999999999999999999987654    46678887643        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.++++++++++|+.|+     .|++|.++++.|.+.|||+.
T Consensus       451 --------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  490 (503)
T 4fuq_A          451 --------ATIDEAQVLHGLDGQLAKFK-----MPKKVIFVDDLPRNTMGKVQ  490 (503)
T ss_dssp             --------CCCCHHHHHHHHBTTBCGGG-----CCSEEEEESCCCBCTTSCBC
T ss_pred             --------CCCCHHHHHHHHHhhcccCC-----CCCEEEEECCCCCCccccee
Confidence                    45678899999999999998     66789999999999999984

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=6.2e-54  Score=449.35  Aligned_cols=337  Identities=28%  Similarity=0.457  Sum_probs=290.0

Q ss_pred             cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh----hcCCCCCcEEEEECChhhhHHHhh-hhhhhccC
Q 012526           17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRG   91 (461)
Q Consensus        17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G   91 (461)
                      .+.....++|+++|+|||||||.||+|+++|+++++.+.....    .+++.++|++++.+|++|.+++.. .+.++..|
T Consensus       170 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G  249 (536)
T 3ni2_A          170 APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVG  249 (536)
T ss_dssp             CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHT
T ss_pred             cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcC
Confidence            3444567899999999999999999999999999887766543    456889999999999999999865 46678999


Q ss_pred             eEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526           92 IELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  168 (461)
Q Consensus        92 ~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      +++++.   ++..+++.++++++|++.++|+++..+.+.....                                     
T Consensus       250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------  292 (536)
T 3ni2_A          250 APILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD-------------------------------------  292 (536)
T ss_dssp             CCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGG-------------------------------------
T ss_pred             CEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccc-------------------------------------
Confidence            999885   5788999999999999999999998876521110                                     


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCC
Q 012526          169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTE  246 (461)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE  246 (461)
                                                            ...+.++|.+++||+++++++ +.+.+.+ ++++++.||+||
T Consensus       293 --------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE  334 (536)
T 3ni2_A          293 --------------------------------------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE  334 (536)
T ss_dssp             --------------------------------------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGG
T ss_pred             --------------------------------------cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccc
Confidence                                                  123456699999999999987 4555667 899999999999


Q ss_pred             CccceeccC-----CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCccc
Q 012526          247 SSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN  321 (461)
Q Consensus       247 ~~~~~~~~~-----~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~  321 (461)
                      ++.+++.+.     ......+++|+|+++++++|+|++++.+++.|+.|||+|+|++++.||+++|+.|...|+.+|||+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~  414 (536)
T 3ni2_A          335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH  414 (536)
T ss_dssp             GSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred             cchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceE
Confidence            987665431     223456889999999999999998999999999999999999999999999999999998899999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcC
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD  397 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~  397 (461)
                      |||+|++++          ||.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.++    +.+.|+|+..
T Consensus       415 TGDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~  483 (536)
T 3ni2_A          415 TGDIGYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKS  483 (536)
T ss_dssp             EEEEEEECT----------TSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred             cccEEEEcC----------CceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEec
Confidence            999999998          8999999999999998 899999999999999999999999998754    3566888875


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++                ...+.++++++++++|+.|+     .|++|.++++.|.+.|||+.
T Consensus       484 ~~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi~  525 (536)
T 3ni2_A          484 EK----------------SQATEDEIKQYISKQVIFYK-----RIKRVFFIEAIPKAPSGKIL  525 (536)
T ss_dssp             TT----------------CCCCHHHHHHHHHTTSCGGG-----CCSEEEECSCCCBCTTSCBC
T ss_pred             CC----------------CCCCHHHHHHHHHHhccCCc-----cccEEEEEecCCCCCCCCee
Confidence            43                45677899999999999998     66789999999999999974

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.3e-53  Score=447.96  Aligned_cols=329  Identities=26%  Similarity=0.410  Sum_probs=286.2

Q ss_pred             CCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh---cCCCCCcEEEEECChhhhHHHhhhh-hhhccCeEEEEc--
Q 012526           24 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT--   97 (461)
Q Consensus        24 ~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~-~~l~~G~~~~~~--   97 (461)
                      ++|+++++|||||||.||+|++||+++.+.+......   ++++++|++++.+|++|.+++...+ .++ .|+++++.  
T Consensus       191 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~  269 (548)
T 2d1s_A          191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK  269 (548)
T ss_dssp             TTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC
T ss_pred             CCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC
Confidence            3899999999999999999999999999888877666   6888999999999999999987644 446 99999884  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++|+++++|+++..+.+.....                                             
T Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  304 (548)
T 2d1s_A          270 FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLN---------------------------------------------  304 (548)
T ss_dssp             CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGG---------------------------------------------
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccc---------------------------------------------
Confidence             5889999999999999999999998886521100                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccceecc
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                    ...+.++|.+++||+++++++ +.+.+.+ +..+++.||+||++..++..
T Consensus       305 ------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~  354 (548)
T 2d1s_A          305 ------------------------------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT  354 (548)
T ss_dssp             ------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred             ------------------------------cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeec
Confidence                                          023445699999999999887 5555667 68899999999998877765


Q ss_pred             CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                      .......+++|+|+++++++|+|+++++++++|+.|||+|+|++++.||+++|+.|.+.|+.+|||+|||+|++++    
T Consensus       355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----  430 (548)
T 2d1s_A          355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----  430 (548)
T ss_dssp             CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred             CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----
Confidence            5445567899999999999999988899999999999999999999999999999999998899999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  410 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~  410 (461)
                            +|.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|+|++.++           
T Consensus       431 ------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~-----------  492 (548)
T 2d1s_A          431 ------EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG-----------  492 (548)
T ss_dssp             ------TCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-----------
T ss_pred             ------CCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCC-----------
Confidence                  8999999999999997 9999999999999999999999999998654    56688887643           


Q ss_pred             CcCCccccCcHHHHHHHHHHHHHHhccCCCccc-cEEEecCCCCCCCCccc
Q 012526          411 VHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       411 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~  460 (461)
                           ...+.++++++++++|+.|+     .++ +|.++++.|.+.|||+.
T Consensus       493 -----~~~~~~~l~~~~~~~l~~~~-----~p~~~i~~v~~lP~t~~GKi~  533 (548)
T 2d1s_A          493 -----KNMTEKEVMDYVASQVSNAK-----RLRGGVRFVDEVPKGLTGKID  533 (548)
T ss_dssp             -----CCCCHHHHHHHHHTTSCGGG-----SCTTCEEECSSCCBCTTSCBC
T ss_pred             -----CCCCHHHHHHHHHHhccccc-----cccccEEEccCCCCCCcchhH
Confidence                 34577899999999999997     555 89999999999999974

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=4.7e-53  Score=439.40  Aligned_cols=338  Identities=26%  Similarity=0.358  Sum_probs=280.2

Q ss_pred             CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526           18 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY   96 (461)
Q Consensus        18 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~   96 (461)
                      +.....++|+++++|||||||.||+|+++|+++.+.+..+...+++.++|++++.+|++|..++.. .+.++..|+++++
T Consensus       148 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~  227 (505)
T 3nyq_A          148 PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH  227 (505)
T ss_dssp             CCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred             CCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence            344567899999999999999999999999999999999888899999999999999999999875 5667999999988


Q ss_pred             c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      .   ++..+++.+ ++++|+++++|+++..+.+......                                         
T Consensus       228 ~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------------  265 (505)
T 3nyq_A          228 LGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP-----------------------------------------  265 (505)
T ss_dssp             CSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH-----------------------------------------
T ss_pred             CCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc-----------------------------------------
Confidence            5   577788888 8899999999999998876432110                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                     .....+.++|.+++||+++++++ +.+.+.+++++++.||+||++..++
T Consensus       266 -------------------------------~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  314 (505)
T 3nyq_A          266 -------------------------------ELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS  314 (505)
T ss_dssp             -------------------------------HHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred             -------------------------------hhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccc
Confidence                                           00012233489999999999887 5555667999999999999998777


Q ss_pred             ccCCCCCCccccccCCCCeEEEEEeCCCCCcCCC---CCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       253 ~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      .........+++|+|+++++++|+|+ ++.+++.   |+.|||+|+|++++.||+++|+.|.+.|..++||+|||+|+++
T Consensus       315 ~~~~~~~~~~~vG~p~~~~~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~  393 (505)
T 3nyq_A          315 VRADGEPRAGTVGVPLPGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD  393 (505)
T ss_dssp             CCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred             cCCCCCCCCCCcccCCCCCEEEEECC-CCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC
Confidence            66665666789999999999999995 4677665   8999999999999999999999999999889999999999999


Q ss_pred             cCCCCCcccccCCeEEEeccc-cceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHH
Q 012526          330 PHHSRGRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMA  404 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~  404 (461)
                      +          ||.++++||. ||+|++ +|++|+|.|||++|.+||+|.+|+|++.++    +.+.|+|++.++     
T Consensus       394 ~----------dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~-----  457 (505)
T 3nyq_A          394 P----------DGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP-----  457 (505)
T ss_dssp             T----------TSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST-----
T ss_pred             C----------CccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC-----
Confidence            8          8999999997 589997 899999999999999999999999998865    357788887632     


Q ss_pred             HHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          405 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ....+.++++++++++|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       458 ----------~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  498 (505)
T 3nyq_A          458 ----------AAPPALGTLADHVAARLAPHK-----RPRVVRYLDAVPRNDMGKIM  498 (505)
T ss_dssp             ----------TSCCCHHHHHHHHHHHTCGGG-----SCSEEEECSCCCC-------
T ss_pred             ----------CCCCCHHHHHHHHHhhCCCCc-----CccEEEEECCCCCCCCcCee
Confidence                      134567899999999999998     66789999999999999984

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=3.4e-53  Score=443.95  Aligned_cols=332  Identities=19%  Similarity=0.296  Sum_probs=284.8

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh--hhhhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~l~~G~~~~~~   97 (461)
                      ....++|+++++|||||||.||||+++|+++.+.+......++++++|++++.+|++|.+++..  .+.++..|+++++.
T Consensus       177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  256 (539)
T 1mdb_A          177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS  256 (539)
T ss_dssp             CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence            3457899999999999999999999999999999888888889999999999999999999875  56679999999985


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|+++..+.+.....                                           
T Consensus       257 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------  293 (539)
T 1mdb_A          257 PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------------------------  293 (539)
T ss_dssp             SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------------------------
T ss_pred             CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------------------------
Confidence               5789999999999999999999998887643221                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceec
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~  253 (461)
                                                      ...+.++|.+++||+++++++ +.+.+.+++++++.||+||++..+..
T Consensus       294 --------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  341 (539)
T 1mdb_A          294 --------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTR  341 (539)
T ss_dssp             --------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECC
T ss_pred             --------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccC
Confidence                                            123455699999999999887 45556689999999999997543332


Q ss_pred             cCC-CCCCccccccCCCC-eEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          254 RRP-TCNVLGSVGHPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       254 ~~~-~~~~~~~~G~~~~~-~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      ... .....+++|+|+++ .+++|+| ++++++++|+.|||+|+||+++.||+++|+.|.+.|..+|||+|||+|++++ 
T Consensus       342 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~-  419 (539)
T 1mdb_A          342 LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR-  419 (539)
T ss_dssp             TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT-
T ss_pred             CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC-
Confidence            111 11234689999976 5899999 5688999999999999999999999999999999998899999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~  407 (461)
                               ||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|+|++..         
T Consensus       420 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~---------  480 (539)
T 1mdb_A          420 ---------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD---------  480 (539)
T ss_dssp             ---------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS---------
T ss_pred             ---------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC---------
Confidence                     8999999999999996 9999999999999999999999999998654    4668888752         


Q ss_pred             cCCCcCCccccCcHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.++++++++++ |+.|+     .|++|.++++.|.+.|||+.
T Consensus       481 --------~~~~~~~l~~~l~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  521 (539)
T 1mdb_A          481 --------EAPKAAELKAFLRERGLAAYK-----IPDRVEFVESFPQTGVGKVS  521 (539)
T ss_dssp             --------SCCCHHHHHHHHHHTTCCGGG-----SCSEEEECSSCCBCTTSCBC
T ss_pred             --------CCCCHHHHHHHHHhCCCCccc-----CCCEEEEeccCCCCCCcCEe
Confidence                    235678999999997 99998     56789999999999999984

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.4e-53  Score=448.09  Aligned_cols=331  Identities=25%  Similarity=0.363  Sum_probs=207.0

Q ss_pred             CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh---cCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      .++|+++|+|||||||.||+|+++|+++...+......   +++.++|++++.+|++|.+++...+.++..|+++++.  
T Consensus       188 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~  267 (550)
T 3rix_A          188 RDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYR  267 (550)
T ss_dssp             TTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             CCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence            45789999999999999999999999998887776554   5788999999999999999998888889999999985  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++|++.++|+++..+.+.....                                             
T Consensus       268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  302 (550)
T 3rix_A          268 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID---------------------------------------------  302 (550)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG---------------------------------------------
T ss_pred             CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccc---------------------------------------------
Confidence             6889999999999999999999998886531110                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCe-eeeecccCCCccceecc
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAAR  254 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~-v~~~YG~tE~~~~~~~~  254 (461)
                                                    ...+.++|.+++||+++++++ +.+.+.++.. +++.||+||++..++..
T Consensus       303 ------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  352 (550)
T 3rix_A          303 ------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT  352 (550)
T ss_dssp             ------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred             ------------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecC
Confidence                                          123455699999999999887 5555677765 99999999999888877


Q ss_pred             CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                      .......+++|+|.++++++|+|+++++++++|+.|||+|+|++++.||+++|+.|...|+.+|||+|||+|++++    
T Consensus       353 ~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----  428 (550)
T 3rix_A          353 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----  428 (550)
T ss_dssp             CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred             CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----
Confidence            7766778899999999999999988899999999999999999999999999999999998899999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHHcCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSI  410 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~~~~  410 (461)
                            ||.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++.    +.++|++.++           
T Consensus       429 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-----------  490 (550)
T 3rix_A          429 ------DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG-----------  490 (550)
T ss_dssp             ------TCCEEEC-------------------------------------------------------------------
T ss_pred             ------CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC-----------
Confidence                  8999999999999997 89999999999999999999999999987653    4566666543           


Q ss_pred             CcCCccccCcHHHHHHHHHHHHHHhccCCCccc-cEEEecCCCCCCCCccc
Q 012526          411 VHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       411 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~  460 (461)
                           ...+.++++++++++|+.++     .++ .|.++++.|.+.|||+.
T Consensus       491 -----~~~~~~~l~~~~~~~l~~~~-----~~~~~i~~v~~lP~t~~GKi~  531 (550)
T 3rix_A          491 -----KTMTEKEIVDYVASQVTTAK-----KLRGGVVFVDEVPKGLTGKLD  531 (550)
T ss_dssp             ---------------------------------------------------
T ss_pred             -----CCCCHHHHHHHHHHhccccc-----ccCCceEEEeecCCCCCccee
Confidence                 34567889999999999876     444 59999999999999974

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=3.9e-53  Score=444.58  Aligned_cols=338  Identities=24%  Similarity=0.404  Sum_probs=267.4

Q ss_pred             CCCCC-CCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           20 ETIGS-DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        20 ~~~~~-~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      ....+ +|+++|+|||||||.||||+++|+++.+++..+...+++.++|++++.+|++|.+++...+.++..|+++++. 
T Consensus       174 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~  253 (549)
T 3g7s_A          174 VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG  253 (549)
T ss_dssp             CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES
T ss_pred             ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC
Confidence            33444 8999999999999999999999999999998888889999999999999999999988877788999999884 


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.++++++|+++++|+++..+.+.......                                          
T Consensus       254 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------  291 (549)
T 3g7s_A          254 MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------------------------------------  291 (549)
T ss_dssp             SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred             CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc------------------------------------------
Confidence              688999999999999999999999998775433210                                          


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHH----hC---CeeeeecccCCC
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA----IG---VKVQVGYGLTES  247 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~----~~---~~v~~~YG~tE~  247 (461)
                                                     ...+..+|.+++||+++++++ +.+.+.    ++   +++++.||+||+
T Consensus       292 -------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~  340 (549)
T 3g7s_A          292 -------------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA  340 (549)
T ss_dssp             -------------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGG
T ss_pred             -------------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEecccc
Confidence                                           013345699999999999877 444444    56   899999999999


Q ss_pred             ccceeccCCCC-CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccC--CCC--cccC
Q 012526          248 SPVIAARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNT  322 (461)
Q Consensus       248 ~~~~~~~~~~~-~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~--~~~--~~~T  322 (461)
                      +.+++...... ...+++|+|+++++++|+|++++++++.|+.|||+|+||+++.||+++|+.+.+.|.  .+|  ||+|
T Consensus       341 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~T  420 (549)
T 3g7s_A          341 CPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRT  420 (549)
T ss_dssp             SSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEE
T ss_pred             chhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEcc
Confidence            98877655433 456789999999999999988899999999999999999999999999999999883  567  9999


Q ss_pred             CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcCh
Q 012526          323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDK  398 (461)
Q Consensus       323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~  398 (461)
                      ||+|++++          ||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|+|++.+
T Consensus       421 GDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~  489 (549)
T 3g7s_A          421 GDVGFIDE----------EGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKP  489 (549)
T ss_dssp             EEEEEECT----------TSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECS
T ss_pred             CcEEEEcC----------CceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECC
Confidence            99999998          8999999999999997 8999999999999999999999999998765    4568888764


Q ss_pred             HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          399 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +.              ....+.++++++++++|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       490 ~~--------------~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  532 (549)
T 3g7s_A          490 EY--------------RGKVDEEDIIEWVRERISGYK-----RVREVEFVEELPRTASGKLL  532 (549)
T ss_dssp             TT--------------TTSCCHHHHHHHHHTTCC----------CCCCEEEECC--------
T ss_pred             Cc--------------cCcCCHHHHHHHHHHhccCcc-----cceEEEEeccCCCCCCcCEe
Confidence            30              134678999999999999998     55689999999999999984

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.9e-52  Score=436.14  Aligned_cols=333  Identities=25%  Similarity=0.359  Sum_probs=284.6

Q ss_pred             cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE
Q 012526           17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY   96 (461)
Q Consensus        17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~   96 (461)
                      .+.....++|+++|+|||||||.||+|++||+++.+.+..+...+++.++|++++.+|++|.+++...+.++..|+++++
T Consensus       162 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~  241 (517)
T 3r44_A          162 EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLIS  241 (517)
T ss_dssp             CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEE
Confidence            34455678999999999999999999999999999999998888999999999999999999999876666668999888


Q ss_pred             c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      .   ++..+++.++++++|++.++|+++..+.+.....                                          
T Consensus       242 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------  279 (517)
T 3r44_A          242 MPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------------------------  279 (517)
T ss_dssp             CSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------------------------
T ss_pred             eCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------------------------
Confidence            5   6889999999999999999999998887642211                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceec
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  253 (461)
                                                       ...+.++|.+++||+++++++.+.+...++++++.||+||++..++.
T Consensus       280 ---------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  326 (517)
T 3r44_A          280 ---------------------------------ELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTL  326 (517)
T ss_dssp             ---------------------------------HCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEE
T ss_pred             ---------------------------------cCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceee
Confidence                                             12344569999999999999866666669999999999999887665


Q ss_pred             cCCC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          254 RRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       254 ~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      ....  ....+++|+|.++++++++| +++.+++.| .|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++++ 
T Consensus       327 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~-  402 (517)
T 3r44_A          327 LLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDD-  402 (517)
T ss_dssp             ECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECT-
T ss_pred             cCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcC-
Confidence            4432  34567899999999999999 567888888 89999999999999999999999999 689999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~  407 (461)
                               ||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++.    +.++++.. +        
T Consensus       403 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~-~--------  463 (517)
T 3r44_A          403 ---------EGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD-Q--------  463 (517)
T ss_dssp             ---------TSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC-T--------
T ss_pred             ---------CeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECC-C--------
Confidence                     8999999999999997 89999999999999999999999999986543    34555322 1        


Q ss_pred             cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.++++++++++|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       464 --------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  503 (517)
T 3r44_A          464 --------NEVSEQQIVEYCGTRLARYK-----LPKKVIFAEAIPRNPTGKIL  503 (517)
T ss_dssp             --------TTCCHHHHHHHHHHHSCGGG-----SCSEEEECSCCCBCTTCCBC
T ss_pred             --------CCCCHHHHHHHHHHhCCCCC-----CCCEEEEECCCCCCCCcCcc
Confidence                    34677999999999999998     66789999999999999984

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.7e-52  Score=433.68  Aligned_cols=332  Identities=21%  Similarity=0.283  Sum_probs=281.1

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCC--CCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY   96 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~   96 (461)
                      ....++|+++++|||||||.||+|+++|+++.+.+..+...+++  .++|++++.+|++|.+++.. .+.++..|+++++
T Consensus       148 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  227 (504)
T 1t5h_X          148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV  227 (504)
T ss_dssp             CCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence            44578999999999999999999999999999988888777888  88999999999999999854 5667899999998


Q ss_pred             c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      .   ++..+++.++++++|+++++|+++..+.+......                                         
T Consensus       228 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------------  266 (504)
T 1t5h_X          228 VEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG-----------------------------------------  266 (504)
T ss_dssp             CSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT-----------------------------------------
T ss_pred             CCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc-----------------------------------------
Confidence            5   57889999999999999999999988876421100                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                      ....+.++|.+++||+++++++ +.+.+.++..+++.||+||++....
T Consensus       267 --------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  314 (504)
T 1t5h_X          267 --------------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLY  314 (504)
T ss_dssp             --------------------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEE
T ss_pred             --------------------------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccccc
Confidence                                            0013455699999999999887 5556667999999999999943322


Q ss_pred             ccCCCCCCccccccCCCCeEEEEEeCCCC--CcCCCCCceEEEEe-cCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          253 ARRPTCNVLGSVGHPINHTEIKIVDAETN--EVLPAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       253 ~~~~~~~~~~~~G~~~~~~~i~i~d~~~~--~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      ..   ....+++|.|.++++++++|.+++  ++++.|+.|||+|+ |++++.||+++|+.|.+.| .+|||+|||+|+++
T Consensus       315 ~~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~  390 (504)
T 1t5h_X          315 MR---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWT  390 (504)
T ss_dssp             EE---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEEC
T ss_pred             cc---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEEC
Confidence            21   344578999999999999995432  88999999999999 8999999999999999999 68999999999999


Q ss_pred             cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHH
Q 012526          330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  405 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~  405 (461)
                      +          ||.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|+|+++++      
T Consensus       391 ~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~------  453 (504)
T 1t5h_X          391 P----------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG------  453 (504)
T ss_dssp             T----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT------
T ss_pred             C----------CceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC------
Confidence            8          8999999999999997 9999999999999999999999999998654    57788887643      


Q ss_pred             HHcCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          406 KRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ...+.+++++++++ +|+.|+     .|++|.++++.|.+.|||+.
T Consensus       454 ----------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  494 (504)
T 1t5h_X          454 ----------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKVL  494 (504)
T ss_dssp             ----------CCCCHHHHHHHHHTSSCCGGG-----SCSEEEECSCCCBCTTSCBC
T ss_pred             ----------cCcCHHHHHHHHhhccCcccc-----cceEEEEhhhCCCCCCCCEe
Confidence                      34577899999998 899997     66799999999999999984

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=8.9e-52  Score=442.36  Aligned_cols=339  Identities=17%  Similarity=0.177  Sum_probs=282.9

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHH-HHhhhcCCCCCcEEEEECChhhhHHH-hhhhhhhccCeEEEE
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYER-ACGYFIFSRGIELMY   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~~~-~~~~~~l~~G~~~~~   96 (461)
                      .....++|+++|+|||||||.||||+++|++++..+. .+...+++.++|++++.+|++|+++. ...+.++..|+++++
T Consensus       250 ~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl  329 (652)
T 1pg4_A          250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM  329 (652)
T ss_dssp             CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred             ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence            3445689999999999999999999999999877653 45567889999999999999999998 456778999999987


Q ss_pred             c-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCC
Q 012526           97 T-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  169 (461)
Q Consensus        97 ~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      .       ++..+++.++++++|+++++|+++..+.+......                                     
T Consensus       330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------------  372 (652)
T 1pg4_A          330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI-------------------------------------  372 (652)
T ss_dssp             ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT-------------------------------------
T ss_pred             ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc-------------------------------------
Confidence            4       46789999999999999999999988865321100                                     


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC---CeeeeecccC
Q 012526          170 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLT  245 (461)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~---~~v~~~YG~t  245 (461)
                                                          ....+.++|.+++||+++++++ +.+.+.++   +++++.||+|
T Consensus       373 ------------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T  416 (652)
T 1pg4_A          373 ------------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT  416 (652)
T ss_dssp             ------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred             ------------------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCc
Confidence                                                0023456799999999999887 45556677   8999999999


Q ss_pred             CCccceeccCCC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec--CCccccccCCchhhccccC--CCCc
Q 012526          246 ESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGW  319 (461)
Q Consensus       246 E~~~~~~~~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~f~--~~~~  319 (461)
                      |++..++...+.  ....+++|+|+++++++|+| +++++++.|+.|||+|+|  |+++.|||++|+.+.+.|.  .+||
T Consensus       417 E~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~  495 (652)
T 1pg4_A          417 ETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM  495 (652)
T ss_dssp             GGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred             ccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence            998766654432  34568999999999999999 458899999999999999  7999999999998877763  3789


Q ss_pred             ccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEE
Q 012526          320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIV  395 (461)
Q Consensus       320 ~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv  395 (461)
                      |+|||+|++++          ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.++    +.+.|+|+
T Consensus       496 y~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv  564 (652)
T 1pg4_A          496 YFSGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVT  564 (652)
T ss_dssp             EEEEEEEEECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             EECCcEEEEcC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEE
Confidence            99999999998          8999999999999998 899999999999999999999999999754    35778898


Q ss_pred             cChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          396 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++++.             .......++|+++++++|+.|+     .++.|.++++.|.+.|||+.
T Consensus       565 ~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~T~sGKi~  611 (652)
T 1pg4_A          565 LNHGE-------------EPSPELYAEVRNWVRKEIGPLA-----TPDVLHWTDSLPKTRSGKIM  611 (652)
T ss_dssp             ECTTC-------------CCCHHHHHHHHHHHHHHTCGGG-----CCSEEEECSCCCBCTTSCBC
T ss_pred             ECCCC-------------CCCHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCCccch
Confidence            86430             0011124788999999999988     66789999999999999984

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.5e-52  Score=439.60  Aligned_cols=332  Identities=23%  Similarity=0.325  Sum_probs=210.7

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh--hhhhhccCeEEEEc
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~l~~G~~~~~~   97 (461)
                      ....++|+++++|||||||.||+|+++|+++.+.+......+++.++|++++.+|++|.+++..  .+.++..|+++++.
T Consensus       186 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  265 (544)
T 3o83_A          186 SSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA  265 (544)
T ss_dssp             CCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             ccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence            4567899999999999999999999999999999999989999999999999999999999875  56678999999985


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|+++..+++.....                                           
T Consensus       266 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------  302 (544)
T 3o83_A          266 PNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY-------------------------------------------  302 (544)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT-------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc-------------------------------------------
Confidence               5788999999999999999999998887643221                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceec
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~  253 (461)
                                                      ...+.++|.+++||+++++++ +.+.+.+++++++.||+||++..+..
T Consensus       303 --------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  350 (544)
T 3o83_A          303 --------------------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTR  350 (544)
T ss_dssp             --------------------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECC
T ss_pred             --------------------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeec
Confidence                                            123445699999999999887 45556679999999999998755443


Q ss_pred             cCCC-CCCccccccCC-CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          254 RRPT-CNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       254 ~~~~-~~~~~~~G~~~-~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      .... ....+++|+|+ ++++++|+| ++++++++|+.|||+|+||+++.||+++|+.+.+.|+.+|||+|||+|++++ 
T Consensus       351 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~-  428 (544)
T 3o83_A          351 LDDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP-  428 (544)
T ss_dssp             TTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT-
T ss_pred             CCCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC-
Confidence            2221 12346789996 899999999 6788999999999999999999999999999999998899999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR  407 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~  407 (461)
                               ||.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++.    +.|+|+..+         
T Consensus       429 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~---------  489 (544)
T 3o83_A          429 ---------DGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN---------  489 (544)
T ss_dssp             ---------TSCEEEEEEEC------------------------------------------------------------
T ss_pred             ---------CCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC---------
Confidence                     8999999999999996 99999999999999999999999999987653    456666543         


Q ss_pred             cCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          408 LSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ...+.+++++++++ +|+.|+     .+++|.++++.|.+.|||+.
T Consensus       490 --------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~  530 (544)
T 3o83_A          490 --------PELKAVVLRRHLMELGIAQYK-----LPDQIKLIESLPLTAVGKVD  530 (544)
T ss_dssp             ------------------------------------------------------
T ss_pred             --------CCCCHHHHHHHHHhCCCCccc-----CCcEEEEeccCCCCCCCCCc
Confidence                    23466788899998 799998     56789999999999999974

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1.7e-52  Score=438.88  Aligned_cols=331  Identities=26%  Similarity=0.395  Sum_probs=246.0

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHH--HhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS--LYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      ...++++++++|||||||.||||++||+++......  ....++++++|++++.+|++|.+++...+.++..|+++++. 
T Consensus       172 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~  251 (541)
T 1v25_A          172 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPG  251 (541)
T ss_dssp             CCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECT
T ss_pred             cCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeC
Confidence            456789999999999999999999999999877655  33556788999999999999999987777788999999884 


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|+++..+++......                                          
T Consensus       252 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------  289 (541)
T 1v25_A          252 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG------------------------------------------  289 (541)
T ss_dssp             TCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT------------------------------------------
T ss_pred             CCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC------------------------------------------
Confidence               57889999999999999999999998877533211                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceecc
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                       ..+..+|.+++||+++++++.+.++.+++++++.||+||++.+++..
T Consensus       290 ---------------------------------~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~  336 (541)
T 1v25_A          290 ---------------------------------HRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQN  336 (541)
T ss_dssp             ---------------------------------CCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEEC
T ss_pred             ---------------------------------CcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecc
Confidence                                             23455699999999999987555577899999999999998877665


Q ss_pred             CCCC-----------CCccccccCCCCeEEEEEeCCCCCcCCC--CCceEEEEecCCccccccCCchhhccccCCCCccc
Q 012526          255 RPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN  321 (461)
Q Consensus       255 ~~~~-----------~~~~~~G~~~~~~~i~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~  321 (461)
                      ....           ...+++|+|+++++++|+|+ ++++++.  ++.|||+|+||+++.||+++|+.|++.|..+|||+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~  415 (541)
T 1v25_A          337 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFR  415 (541)
T ss_dssp             CCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEE
T ss_pred             cccccccccCccccccccCCCCCcCCCcEEEEECC-CCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeE
Confidence            4321           12468999999999999995 5677774  36899999999999999999999999998799999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcC
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  397 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~  397 (461)
                      |||+|++++          ||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|+|++.
T Consensus       416 TGDlg~~d~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~  484 (541)
T 1v25_A          416 TGDIAVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR  484 (541)
T ss_dssp             EEEEEEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---
T ss_pred             cCCEEEEcC----------CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC
Confidence            999999998          8999999999999997 9999999999999999999999999998654    466777654


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      .                 ...+.+++++++++ +|+.|+     .++.|.++++.|.+.|||+.
T Consensus       485 ~-----------------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  526 (541)
T 1v25_A          485 G-----------------EKPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGKFL  526 (541)
T ss_dssp             ---------------------------------CCCTTT-----SCSBC--------------C
T ss_pred             C-----------------CCCCHHHHHHHHHhccCcccc-----CCcEEEEeCCCCCCCccCee
Confidence            1                 23456788888888 788887     66788999999999999984

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.2e-51  Score=435.64  Aligned_cols=333  Identities=22%  Similarity=0.272  Sum_probs=275.5

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc--
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~--   97 (461)
                      ...++|+++++|||||||.||+|.++|.+++..+......+++.+++++++..|+.|..+.+. .+.++..|+++++.  
T Consensus       221 ~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~  300 (580)
T 3etc_A          221 STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDY  300 (580)
T ss_dssp             SCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEEC
T ss_pred             CCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecC
Confidence            467899999999999999999999999999888777777788999999999999999888765 55668889988774  


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|+++..|.+...                                             
T Consensus       301 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------------------------------------  335 (580)
T 3etc_A          301 DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL---------------------------------------------  335 (580)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc---------------------------------------------
Confidence               57889999999999999999999988765200                                             


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceec
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~  253 (461)
                                                     ....+.++|.+++||+++++++ +++.+.+++++++.||+||++..++.
T Consensus       336 -------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~  384 (580)
T 3etc_A          336 -------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT  384 (580)
T ss_dssp             ----------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred             -------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence                                           0023455699999999999887 55666689999999999999887776


Q ss_pred             cCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec-----CCccccccCCchhhccccCCCCcccCCceEee
Q 012526          254 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  328 (461)
Q Consensus       254 ~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~-----~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~  328 (461)
                      .+.....++++|+|+++++++|+|+ +++++++|+.|||+|++     ++++.||+++|+.|.+.| .+|||+|||+|++
T Consensus       385 ~~~~~~~~~~~G~p~~~~~v~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~  462 (580)
T 3etc_A          385 FPWMEPKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM  462 (580)
T ss_dssp             CTTSCCCTTCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEE
T ss_pred             CCCCCCCCCccccCCCCCEEEEECC-CCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEE
Confidence            6655667889999999999999995 58899999999999997     789999999999999999 5899999999999


Q ss_pred             ccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHH
Q 012526          329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  404 (461)
Q Consensus       329 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~  404 (461)
                      ++          ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|+|++.++     
T Consensus       463 d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~-----  526 (580)
T 3etc_A          463 DE----------DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKD-----  526 (580)
T ss_dssp             CT----------TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-----
T ss_pred             CC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCC-----
Confidence            98          8999999999999998 7999999999999999999999999998654    45678887643     


Q ss_pred             HHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          405 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                              ........++|+++++++|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       527 --------~~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~sGKi~  569 (580)
T 3etc_A          527 --------YTPSDSLKNELQDHVKNVTAPYK-----YPRIIEFVPELPKTISGKIR  569 (580)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHSCGGG-----CCSEEEEECC----------
T ss_pred             --------CCCCHHHHHHHHHHHHhhCCCcc-----CCeEEEEeCCCCCCCCcCCc
Confidence                    00112234688899999998887     66789999999999999974

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.5e-51  Score=433.42  Aligned_cols=323  Identities=21%  Similarity=0.242  Sum_probs=273.8

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---   97 (461)
                      ...++|+++++|||||||.||||++||+++.+.+......++++++|++++++|++|.+++...+.++..|+++++.   
T Consensus       178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~  257 (563)
T 1amu_A          178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD  257 (563)
T ss_dssp             CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence            45678999999999999999999999999998888888888999999999999999999988778889999999884   


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|+++..+..                                                
T Consensus       258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~------------------------------------------------  289 (563)
T 1amu_A          258 TINDFVKFEQYINQKEITVITLPPTYVVHLDP------------------------------------------------  289 (563)
T ss_dssp             HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------------------------------------------------
T ss_pred             hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh------------------------------------------------
Confidence               46778999999999999999998755421                                                


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceecc
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  254 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  254 (461)
                                                       ..+.++|.+++||+++++++.+.+.. .+.+++.||+||++..++..
T Consensus       290 ---------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~  335 (563)
T 1amu_A          290 ---------------------------------ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTW  335 (563)
T ss_dssp             ---------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEE
T ss_pred             ---------------------------------cccccccEEEEEEecCCHHHHHHHHh-CCeEEEEECcCHHhHhheee
Confidence                                             12334589999999999887554433 47899999999998766543


Q ss_pred             CCCC---CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC------CCcccCCce
Q 012526          255 RPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDI  325 (461)
Q Consensus       255 ~~~~---~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~------~~~~~TGDl  325 (461)
                      ....   ....++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|..      ++||+|||+
T Consensus       336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl  414 (563)
T 1amu_A          336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ  414 (563)
T ss_dssp             ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred             ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence            3221   2456899999999999999 56889999999999999999999999999999988843      469999999


Q ss_pred             EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHH
Q 012526          326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  401 (461)
Q Consensus       326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~  401 (461)
                      |++++          ||+++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|+|++.    
T Consensus       415 g~~d~----------dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~----  479 (563)
T 1amu_A          415 ARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE----  479 (563)
T ss_dssp             EEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEES----
T ss_pred             EEEcC----------CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeC----
Confidence            99998          8999999999999997 9999999999999999999999999988643    567788764    


Q ss_pred             HHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          402 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                    ...+.++++++++++|+.|+     .+++|.++++.|.+.|||+.
T Consensus       480 --------------~~~~~~~l~~~l~~~L~~y~-----~P~~i~~v~~lP~t~~GKi~  519 (563)
T 1amu_A          480 --------------KHIPLEQLRQFSSEELPTYM-----IPSYFIQLDKMPLTSNGKID  519 (563)
T ss_dssp             --------------SCCCHHHHHHHHHHHSCGGG-----SCSEEEECSSCCBCTTSSBC
T ss_pred             --------------CCCCHHHHHHHHHhhCchhh-----CCcEEEEecccCCCCCcChh
Confidence                          23567899999999999998     66789999999999999984

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2e-51  Score=427.81  Aligned_cols=337  Identities=24%  Similarity=0.266  Sum_probs=282.2

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-   97 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-   97 (461)
                      .....++|+++++|||||||.||+|++||+++.+.+......+++.++|++++.+|++|.+++...+.++..|+++++. 
T Consensus       137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~  216 (511)
T 3e7w_A          137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVT  216 (511)
T ss_dssp             GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred             cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence            3445788999999999999999999999999999999888889999999999999999999988888889999999884 


Q ss_pred             -----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           98 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        98 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                           ++..+++.++++++|++.++|+++..++.....                                          
T Consensus       217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------------  254 (511)
T 3e7w_A          217 KDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF------------------------------------------  254 (511)
T ss_dssp             HHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC------------------------------------------
T ss_pred             hhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc------------------------------------------
Confidence                 467899999999999999999999877642110                                          


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccc
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPV  250 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~  250 (461)
                                                       ....+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++..
T Consensus       255 ---------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~  301 (511)
T 3e7w_A          255 ---------------------------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVA  301 (511)
T ss_dssp             ---------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSC
T ss_pred             ---------------------------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheee
Confidence                                             0123455689999999999887 5556667 8999999999999877


Q ss_pred             eeccCC-----CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC-CC--cccC
Q 012526          251 IAARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNT  322 (461)
Q Consensus       251 ~~~~~~-----~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~-~~--~~~T  322 (461)
                      ++....     ......++|+|.++++++|+|+ +++++++|+.|||+|+||+++.||+++|+.+.+.|.. ++  ||+|
T Consensus       302 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~T  380 (511)
T 3e7w_A          302 VTSVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRT  380 (511)
T ss_dssp             SEEEEECHHHHTTCSSCCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEE
T ss_pred             eeEEeccccccccCCcCCCcceeCCCEEEEECC-CCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeC
Confidence            654322     1234467999999999999994 5899999999999999999999999999999998832 23  7999


Q ss_pred             CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcCh
Q 012526          323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDK  398 (461)
Q Consensus       323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~  398 (461)
                      ||+|++ +          ||.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|++++.+
T Consensus       381 GDlg~~-~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~  448 (511)
T 3e7w_A          381 GDAGFI-Q----------DGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEE  448 (511)
T ss_dssp             EEEEEE-E----------TTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECC
T ss_pred             CCeEEc-c----------CCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecc
Confidence            999998 5          7999999999999998 8999999999999999999999999987543    5778888764


Q ss_pred             HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          399 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +.            ........++++++++++|+.|+     .|++|.++++.|.+.|||+.
T Consensus       449 ~~------------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~v~~lP~t~~GKi~  493 (511)
T 3e7w_A          449 HE------------FEKEFQLTSAIKKELAASLPAYM-----IPRKFIYQDHIQMTANGKID  493 (511)
T ss_dssp             CC------------CSSHHHHHHHHHHHHHHHSCGGG-----SCSEEEECSCCCBCTTSCBC
T ss_pred             cc------------ccchhhHHHHHHHHHHhhCchhh-----CCeeEEEeccCCCCCCcCcc
Confidence            20            00001123678888888888887     66789999999999999984

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.3e-51  Score=429.51  Aligned_cols=338  Identities=22%  Similarity=0.235  Sum_probs=279.8

Q ss_pred             CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc
Q 012526           18 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT   97 (461)
Q Consensus        18 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~   97 (461)
                      +.....++|+++++|||||||.||+|++||+++.+.+......+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus       137 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~  216 (512)
T 3fce_A          137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI  216 (512)
T ss_dssp             GGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred             ccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence            34456789999999999999999999999999999998888889999999999999999999988888889999999884


Q ss_pred             ------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526           98 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus        98 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                            ++..+++.++++++|++.++|+++..++......                                        
T Consensus       217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------------  256 (512)
T 3fce_A          217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS----------------------------------------  256 (512)
T ss_dssp             CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCS----------------------------------------
T ss_pred             CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcccc----------------------------------------
Confidence                  4678999999999999999999997775421100                                        


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCcc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSP  249 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~  249 (461)
                                                         ...+.++|.+++||+++++++ +.+.+.+ ++++++.||+||++.
T Consensus       257 -----------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~  301 (512)
T 3fce_A          257 -----------------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATV  301 (512)
T ss_dssp             -----------------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred             -----------------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhh
Confidence                                               123455699999999999887 5566677 899999999999988


Q ss_pred             ceeccCCCC-----CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhcccc---CCCCccc
Q 012526          250 VIAARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLN  321 (461)
Q Consensus       250 ~~~~~~~~~-----~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f---~~~~~~~  321 (461)
                      .++......     ....++|+|.++++++++| +++.++++|+.|||+|+||+++.||+++|+.+.+.|   +.++||+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~  380 (512)
T 3fce_A          302 AVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYK  380 (512)
T ss_dssp             CSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEE
T ss_pred             heeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEe
Confidence            765433221     2456789999999999999 678999999999999999999999999999999988   3467999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcC
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD  397 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~  397 (461)
                      |||+|++ +          ||.++|.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++    +.+.|+|++.
T Consensus       381 TGDlg~~-~----------dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~  448 (512)
T 3fce_A          381 TGDAGYV-E----------NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPG  448 (512)
T ss_dssp             EEEEEEE-E----------TTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCceEEe-c----------CCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecC
Confidence            9999998 6          7999999999999998 999999999999999999999999997654    3567888876


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++.            ........++++++++++|+.|+     .+++|.++++.|.+.|||+.
T Consensus       449 ~~~------------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~~~~lP~t~~GKi~  494 (512)
T 3fce_A          449 EHS------------FEKEFKLTSAIKKELNERLPNYM-----IPRKFMYQSSIPMTPNGKVD  494 (512)
T ss_dssp             SCC------------CSSHHHHHHHHHHHHHTTSCGGG-----SCSEEEECSCCCBCTTSSBC
T ss_pred             Ccc------------ccchhhhHHHHHHHHHhhCchhc-----CCeEEEEecccCCCCCcChH
Confidence            420            00001123578888888888887     66789999999999999984

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=5.7e-51  Score=429.69  Aligned_cols=334  Identities=19%  Similarity=0.246  Sum_probs=279.8

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHH--HHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH--QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY   96 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~--~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~   96 (461)
                      ....++|+++|+|||||||.||+|+++|+ ++.  ..... ..++++++|++++.+|++|.+++.. .+.++..|+++++
T Consensus       201 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  278 (570)
T 3c5e_A          201 VETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV  278 (570)
T ss_dssp             CCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred             cCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence            44678999999999999999999999999 444  33344 6778999999999999999999874 6667889998887


Q ss_pred             c-----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526           97 T-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus        97 ~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                      .     ++..+++.++++++|+++++|+++..+.+..    .                                      
T Consensus       279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----~--------------------------------------  316 (570)
T 3c5e_A          279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD----L--------------------------------------  316 (570)
T ss_dssp             ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----T--------------------------------------
T ss_pred             ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----c--------------------------------------
Confidence            4     5788999999999999999999998886520    0                                      


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV  250 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~  250 (461)
                                                        ....+..+|.+++||+++++++ +.+.+.+++++++.||+||++..
T Consensus       317 ----------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~  362 (570)
T 3c5e_A          317 ----------------------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLT  362 (570)
T ss_dssp             ----------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEE
T ss_pred             ----------------------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccc
Confidence                                              0013445699999999998886 55666689999999999999877


Q ss_pred             eeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEe-----cCCccccccCCchhhccccCCCCcccCCce
Q 012526          251 IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR-----GSQVMQGYFKNPSATKQALDEDGWLNTGDI  325 (461)
Q Consensus       251 ~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~-----~~~~~~gy~~~~~~~~~~f~~~~~~~TGDl  325 (461)
                      ++.........+++|+|+++++++|+| +++++++.|+.|||+|+     |++++.||+++|+.|...| .++||+|||+
T Consensus       363 ~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDl  440 (570)
T 3c5e_A          363 CMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDR  440 (570)
T ss_dssp             EECCTTSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEE
T ss_pred             eecCcccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCcccccee
Confidence            665544445678999999999999999 45889999999999999     9999999999999999999 4899999999


Q ss_pred             EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHH
Q 012526          326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  401 (461)
Q Consensus       326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~  401 (461)
                      |++++          ||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|+|++.++..
T Consensus       441 g~~d~----------dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~  509 (570)
T 3c5e_A          441 GIKDE----------DGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL  509 (570)
T ss_dssp             EEECT----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT
T ss_pred             EEEcC----------CceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc
Confidence            99998          8999999999999997 8999999999999999999999999998653    4668888764310


Q ss_pred             HHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          402 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                 ........++|+++++++|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       510 -----------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  552 (570)
T 3c5e_A          510 -----------SHDPEQLTKELQQHVKSVTAPYK-----YPRKIEFVLNLPKTVTGKIQ  552 (570)
T ss_dssp             -----------TSCHHHHHHHHHHHHHHHSCGGG-----SCSEEEEESCCCBCTTCCBC
T ss_pred             -----------CcchHHHHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCCcCCc
Confidence                       00112235788888888888887     66789999999999999984

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=7.8e-51  Score=432.75  Aligned_cols=335  Identities=21%  Similarity=0.328  Sum_probs=286.7

Q ss_pred             CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh--hhhhhccCeEEE
Q 012526           18 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELM   95 (461)
Q Consensus        18 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~l~~G~~~~   95 (461)
                      ......++|++|++|||||||.||||+++|+++.+.+......+++.++|++++++|++|.+++..  .+.++..|++++
T Consensus       177 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v  256 (617)
T 3rg2_A          177 TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV  256 (617)
T ss_dssp             CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEE
T ss_pred             CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEE
Confidence            344567899999999999999999999999999999999888899999999999999999998865  667789999999


Q ss_pred             Ec---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           96 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        96 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                      +.   ++..+++.++++++|++.++|+++..+.+......                                        
T Consensus       257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------  296 (617)
T 3rg2_A          257 LAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE----------------------------------------  296 (617)
T ss_dssp             ECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC----------------------------------------
T ss_pred             EeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc----------------------------------------
Confidence            85   57788999999999999999999988876532210                                        


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccce
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI  251 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~  251 (461)
                                                       ....+..+|.+++||+++++++ +.+.+.++++++|.||+||++..+
T Consensus       297 ---------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  343 (617)
T 3rg2_A          297 ---------------------------------SRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNY  343 (617)
T ss_dssp             ---------------------------------CTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEE
T ss_pred             ---------------------------------ccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeec
Confidence                                             0123455699999999999887 555566799999999999987654


Q ss_pred             eccCCCC-CCccccccCC-CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          252 AARRPTC-NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       252 ~~~~~~~-~~~~~~G~~~-~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      +...... ....++|.|+ ++.+++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|..++||+|||+|+++
T Consensus       344 ~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~  422 (617)
T 3rg2_A          344 TRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID  422 (617)
T ss_dssp             CCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred             ccCCCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEc
Confidence            4322211 2235789997 788999999 668999999999999999999999999999999999989999999999999


Q ss_pred             cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHHH
Q 012526          330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAA  405 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~~  405 (461)
                      +          ||.++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++    +.+.++++..        
T Consensus       423 ~----------dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~--------  483 (617)
T 3rg2_A          423 P----------EGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK--------  483 (617)
T ss_dssp             T----------TSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--------
T ss_pred             C----------CceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeC--------
Confidence            8          8999999999999997 899999999999999999999999998754    3566788775        


Q ss_pred             HHcCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          406 KRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ...+.+++++++++ .|+.|+     .+..|.++++.|.+.|||+.
T Consensus       484 ----------~~~~~~~l~~~l~~~~lp~~~-----vP~~~~~v~~lP~t~~GKid  524 (617)
T 3rg2_A          484 ----------EPLRAVQVRRFLREQGIAEFK-----LPDRVECVDSLPLTAVGKVD  524 (617)
T ss_dssp             ----------SCCCHHHHHHHHHTTTCCGGG-----SCSEEEECSCCCBCTTSSBC
T ss_pred             ----------CCCCHHHHHHHHHhCCCcccc-----CCcEEEEecccCCCCCCCCc
Confidence                      23567889999998 699998     56789999999999999984

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.1e-51  Score=435.47  Aligned_cols=330  Identities=22%  Similarity=0.262  Sum_probs=203.6

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      ....++|+++|+|||||||.||||+++|+++.+.+.. ...++++++|++++++|++|..+....+.++..|+++++.  
T Consensus       209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~  287 (570)
T 4gr5_A          209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG  287 (570)
T ss_dssp             CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred             CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence            4467899999999999999999999999999776554 4556789999999999999877777777789999988884  


Q ss_pred             ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526           98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  174 (461)
Q Consensus        98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (461)
                         ++..+++.++++++|++.++|+++..+.+..                                              
T Consensus       288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------------------------------------  321 (570)
T 4gr5_A          288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV----------------------------------------------  321 (570)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----------------------------------------------
T ss_pred             ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc----------------------------------------------
Confidence               4778999999999999999999998886521                                              


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCcccee
Q 012526          175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~  252 (461)
                                                      ...+.++|.+++||++++... +++.+.+ ++++++.||+||++.+++
T Consensus       322 --------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  369 (570)
T 4gr5_A          322 --------------------------------PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTT  369 (570)
T ss_dssp             --------------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred             --------------------------------hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeee
Confidence                                            123445699999999998654 6676766 899999999999987765


Q ss_pred             ccCCC----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCC--------Ccc
Q 012526          253 ARRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED--------GWL  320 (461)
Q Consensus       253 ~~~~~----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~--------~~~  320 (461)
                      .....    .....++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|..+        +||
T Consensus       370 ~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~  448 (570)
T 4gr5_A          370 HHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMY  448 (570)
T ss_dssp             EEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEE
T ss_pred             eeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEE
Confidence            44321    23345689999999999999 568899999999999999999999999999999988543        799


Q ss_pred             cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEc
Q 012526          321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  396 (461)
Q Consensus       321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~  396 (461)
                      +|||+|++++          ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.|+|++
T Consensus       449 ~TGDlg~~d~----------dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~  517 (570)
T 4gr5_A          449 RTGDLARRRA----------DGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVA  517 (570)
T ss_dssp             EEEEEEEECT----------TSCEEEEEC---------------------------------------------------
T ss_pred             eCCCeEEECC----------CCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEe
Confidence            9999999998          8999999999999997 9999999999999999999999999998654    56677776


Q ss_pred             ChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          397 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ..+               ....+.++|+++++++|+.|+     .+++|.++++.|.+.|||+.
T Consensus       518 ~~~---------------~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~  561 (570)
T 4gr5_A          518 ERA---------------DAPPDAAELRRHVAEALPAYM-----VPVECVPVDELPRTPNGKLD  561 (570)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             cCC---------------CCCcCHHHHHHHHHhhCcccc-----CCcEEEEcccCCCCCCcCcc
Confidence            532               134567899999999999998     56789999999999999974

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=9.9e-52  Score=429.99  Aligned_cols=331  Identities=23%  Similarity=0.327  Sum_probs=205.5

Q ss_pred             ccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhh-ccCeEE
Q 012526           16 HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIF-SRGIEL   94 (461)
Q Consensus        16 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l-~~G~~~   94 (461)
                      ..+.....++|+++|+|||||||.||+|+++|+++.+.+......++++++|++++.+|++|.+++...+.++ ..|+.+
T Consensus       151 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~  230 (509)
T 3ivr_A          151 PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASV  230 (509)
T ss_dssp             CCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEE
Confidence            3444566889999999999999999999999999999999988899999999999999999999998777654 445555


Q ss_pred             EE--cchhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           95 MY--TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        95 ~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                      +.  +++..+++.++++++|++.++|+++..+++...                                           
T Consensus       231 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------------------------------------------  267 (509)
T 3ivr_A          231 IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-------------------------------------------  267 (509)
T ss_dssp             ECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-------------------------------------------
T ss_pred             EecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-------------------------------------------
Confidence            44  378899999999999999999999988876320                                           


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHh-CCeeeeecccCCCccce
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVI  251 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~-~~~v~~~YG~tE~~~~~  251 (461)
                                                        ...+..++.++.+|++  ...+.+.+.+ ++++++.||+||++.++
T Consensus       268 ----------------------------------~~~l~~lr~~~~~g~~--~~~~~~~~~~~~~~~~~~YG~TE~~~~~  311 (509)
T 3ivr_A          268 ----------------------------------PAQLASLRAVTGLDTP--ETIERFEATCPNATFWATFGQSETSGLS  311 (509)
T ss_dssp             ----------------------------------GGGGTTCCEEEEECCH--HHHHHHHHHCTTCEEEEEEEEGGGTEEE
T ss_pred             ----------------------------------ccchhhhheecccCCh--HHHHHHHHhcCCCeEEcccCcccccccc
Confidence                                              0234455888889887  5557777777 89999999999999876


Q ss_pred             eccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          252 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       252 ~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      +...... ...++|+|+++++++|+|+ +++++++|+.|||+|+|++++.||+++|+.+.+.|. +|||+|||+|++++ 
T Consensus       312 ~~~~~~~-~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~-  387 (509)
T 3ivr_A          312 TFAPYRD-RPKSAGRPLFWRTVAVVDA-EDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDA-  387 (509)
T ss_dssp             EEEEGGG-STTSCCEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECT-
T ss_pred             ccCcccc-CCCcccccCCCcEEEEECC-CCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEECC-
Confidence            6544322 2345899999999999995 589999999999999999999999999999999994 89999999999998 


Q ss_pred             CCCCcccccCCeEEEeccc--cceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHH
Q 012526          332 HSRGRSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAA  405 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~--~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~  405 (461)
                               ||.+++.||.  ||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++.    +.+++++.++      
T Consensus       388 ---------dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~------  451 (509)
T 3ivr_A          388 ---------DGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG------  451 (509)
T ss_dssp             ---------TSCEEEEEEC-------------------------------------------------------------
T ss_pred             ---------CceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC------
Confidence                     8999999999  999996 99999999999999999999999999987654    5567766543      


Q ss_pred             HHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          406 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ...+.++++++++++|+.|+     .|++|.++++.|.+.|||+.
T Consensus       452 ----------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKid  491 (509)
T 3ivr_A          452 ----------ESIAADALAEFVASLIARYK-----KPKHVVFVEALPKDAKGAID  491 (509)
T ss_dssp             -------------------------------------------------------
T ss_pred             ----------CCCCHHHHHHHHHhhCcccC-----CCcEEEEecCCCCCCCCCcc
Confidence                      34567899999999999998     56789999999999999974

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6.1e-51  Score=423.18  Aligned_cols=321  Identities=24%  Similarity=0.316  Sum_probs=272.2

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      ....++|+++++|||||||.||+|++||+++.+.+......++++++|++++.+|++|.+++...+.++..|+++++.  
T Consensus       158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~  237 (501)
T 3ipl_A          158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK  237 (501)
T ss_dssp             CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence            345789999999999999999999999999999998888889999999999999999999998888889999999985  


Q ss_pred             -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526           98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  176 (461)
Q Consensus        98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (461)
                       ++..+++.++++++|++.++|+++..+.+....                                              
T Consensus       238 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------------------  271 (501)
T 3ipl_A          238 FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------------------------  271 (501)
T ss_dssp             CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------------------
T ss_pred             CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------------------
Confidence             688999999999999999999999888653110                                              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCC
Q 012526          177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  256 (461)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  256 (461)
                                                      ...++|.+++||+++++++.+....+++++++.||+||++..+.....
T Consensus       272 --------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  319 (501)
T 3ipl_A          272 --------------------------------EPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATP  319 (501)
T ss_dssp             --------------------------------SCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECH
T ss_pred             --------------------------------CcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCc
Confidence                                            001348999999999998866666689999999999999876554332


Q ss_pred             C--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526          257 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  334 (461)
Q Consensus       257 ~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~  334 (461)
                      .  ....+++|+|+++++++++|++      +|+.|||+|+|++++.||+++|+.+.. | .+|||+|||+|++++    
T Consensus       320 ~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~----  387 (501)
T 3ipl_A          320 EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDH----  387 (501)
T ss_dssp             HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECT----
T ss_pred             cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcC----
Confidence            2  2345789999999999999964      466899999999999999999999887 6 689999999999998    


Q ss_pred             CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHHcCC
Q 012526          335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSI  410 (461)
Q Consensus       335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~~~~  410 (461)
                            +|.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++.    +.++++..             
T Consensus       388 ------~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~-------------  447 (501)
T 3ipl_A          388 ------EGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE-------------  447 (501)
T ss_dssp             ------TSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-------------
T ss_pred             ------CCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC-------------
Confidence                  8999999999999996 99999999999999999999999999986553    45666653             


Q ss_pred             CcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          411 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       411 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           ...+.++++++++++|+.|+     .+++|.++++.|.+.|||+.
T Consensus       448 -----~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  487 (501)
T 3ipl_A          448 -----SDISKAQLIAYLSKHLAKYK-----VPKHFEKVDTLPYTSTGKLQ  487 (501)
T ss_dssp             -----SCCCHHHHHHHHHHHSCGGG-----SCSEEEECSSCC--------
T ss_pred             -----CCCCHHHHHHHHHhhCcccc-----CCCEEEEecccCCCCCCCEe
Confidence                 34578999999999999998     66789999999999999974

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=6.5e-51  Score=432.71  Aligned_cols=323  Identities=18%  Similarity=0.186  Sum_probs=269.6

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---   97 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~---   97 (461)
                      ...++|++||+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+|++|..++...+.++..|+++++.   
T Consensus       160 ~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~  238 (620)
T 4dg8_A          160 CFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG  238 (620)
T ss_dssp             CCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred             CCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence            346899999999999999999999999999877655 5567889999999999999999998888899999999884   


Q ss_pred             --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526           98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  175 (461)
Q Consensus        98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                        ++..+++.++++++|++.++|+++..+.+..                                               
T Consensus       239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-----------------------------------------------  271 (620)
T 4dg8_A          239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDLD-----------------------------------------------  271 (620)
T ss_dssp             SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-----------------------------------------------
T ss_pred             cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-----------------------------------------------
Confidence              5788999999999999999999998876420                                               


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchh-HHHHHHHh-CCeeeeecccCCCccceec
Q 012526          176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAI-GVKVQVGYGLTESSPVIAA  253 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~-~~~~~~~~-~~~v~~~YG~tE~~~~~~~  253 (461)
                                                     ...+.++|.+++||++++.. ++++.+.+ +++++|.||+||++.+++.
T Consensus       272 -------------------------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~  320 (620)
T 4dg8_A          272 -------------------------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC  320 (620)
T ss_dssp             -------------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred             -------------------------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence                                           02344569999999999865 56676665 8999999999999887654


Q ss_pred             cCCC----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCC-------CcccC
Q 012526          254 RRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-------GWLNT  322 (461)
Q Consensus       254 ~~~~----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~-------~~~~T  322 (461)
                      ....    .....++|+|+++++++|+|+++...++.|+.|||+|+|++++.||+++|+.|++.|..+       +||+|
T Consensus       321 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrT  400 (620)
T 4dg8_A          321 HVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRT  400 (620)
T ss_dssp             EECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEE
T ss_pred             EeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeC
Confidence            3322    134568999999999999997766668999999999999999999999999999999653       79999


Q ss_pred             CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeE---EEEEcChH
Q 012526          323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG---AIIVPDKE  399 (461)
Q Consensus       323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~---a~vv~~~~  399 (461)
                      ||+|++++          ||.++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++...   ++++..  
T Consensus       401 GDl~~~~~----------dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~--  467 (620)
T 4dg8_A          401 GDRARYDE----------QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGK--  467 (620)
T ss_dssp             EEEEEECT----------TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             CCEEEECC----------CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecC--
Confidence            99999998          8999999999999998 8999999999999999999999999988665433   333322  


Q ss_pred             HHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          400 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                          .++++++++++|+.|+     .++.|.++++.|.+.|||+.
T Consensus       468 --------------------~~~~~~~l~~~Lp~y~-----~P~~~~~v~~lP~t~~GKid  503 (620)
T 4dg8_A          468 --------------------ADASPQALLRQLPTWQ-----RPHACVRVEALPLTAHGKLD  503 (620)
T ss_dssp             --------------------TTCCCHHHHHHSCGGG-----SCSEEEECSSCCCC----CC
T ss_pred             --------------------hHHHHHHHHHhChhhc-----CCcEEEEECcCCCCcccCHh
Confidence                                1223456778899998     56789999999999999984

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=4.2e-51  Score=427.24  Aligned_cols=336  Identities=24%  Similarity=0.368  Sum_probs=271.7

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHH-HHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~   96 (461)
                      .....++|+++++|||||||.||+|+++|+++ ..........+++.++|++++.+|++|.+++.. .+.++..|+++++
T Consensus       177 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  256 (529)
T 2v7b_A          177 AAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAIL  256 (529)
T ss_dssp             CCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEEC
T ss_pred             ccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEE
Confidence            34567899999999999999999999999999 666655566678899999999999999999875 4567899999887


Q ss_pred             c----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           97 T----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        97 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                      .    ++..+++.++++++|++.++|+++..++......                                         
T Consensus       257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------------  295 (529)
T 2v7b_A          257 MAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLP-----------------------------------------  295 (529)
T ss_dssp             CCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCC-----------------------------------------
T ss_pred             ecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccc-----------------------------------------
Confidence            4    5788999999999999999999998776421000                                         


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccce
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI  251 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~  251 (461)
                                                      .  .....+|.+++||+++++++ +.+.+.+++++++.||+||++.++
T Consensus       296 --------------------------------~--~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~  341 (529)
T 2v7b_A          296 --------------------------------A--RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIF  341 (529)
T ss_dssp             --------------------------------C--GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEE
T ss_pred             --------------------------------c--ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCcee
Confidence                                            0  00114589999999999887 555566799999999999997766


Q ss_pred             eccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526          252 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  331 (461)
Q Consensus       252 ~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~  331 (461)
                      ..........+++|+|.++++++|+| ++++++++|+.|||+|+|++++.||+++|+.+...|. ++||+|||+|++++ 
T Consensus       342 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~-  418 (529)
T 2v7b_A          342 LSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLP-  418 (529)
T ss_dssp             EECCTTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECT-
T ss_pred             eccccCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECC-
Confidence            65555555678899999999999999 5688999999999999999999999999999999994 89999999999998 


Q ss_pred             CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC---CCeeEEEEEcChHHHHHHHHHc
Q 012526          332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRL  408 (461)
Q Consensus       332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~---~~~~~a~vv~~~~~~~~~~~~~  408 (461)
                               +|.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++..   .+.+.|++++.++.        
T Consensus       419 ---------~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~--------  480 (529)
T 2v7b_A          419 ---------NGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF--------  480 (529)
T ss_dssp             ---------TSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC--------
T ss_pred             ---------CccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC--------
Confidence                     8999999999999997 89999999999999999999999999972   23567888876420        


Q ss_pred             CCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          409 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                           .......++++++++++|+.|+     .+++|.++++.|.+.|||+.
T Consensus       481 -----~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  522 (529)
T 2v7b_A          481 -----APSEILAEELKAFVKDRLAPHK-----YPRDIVFVDDLPKTATGKIQ  522 (529)
T ss_dssp             -----CCCHHHHHHHHHHHHTTSCTTT-----SCSEEEEESCCCBCTTSCBC
T ss_pred             -----CcchhHHHHHHHHHHhhcchhh-----CCeEEEEeccCCCCCccchh
Confidence                 0011123578888888888776     67789999999999999974

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=6.9e-51  Score=435.94  Aligned_cols=349  Identities=19%  Similarity=0.213  Sum_probs=282.5

Q ss_pred             cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHH-HHhhhcCCCCCcEEEEECChhhhHHH-hhhhhhhccCeEE
Q 012526           17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYER-ACGYFIFSRGIEL   94 (461)
Q Consensus        17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~~~-~~~~~~l~~G~~~   94 (461)
                      .+.....++|+++|+|||||||.||||+++|++++..+. .+...+++.++|++++.+|++|+.+. ...+.++..|+++
T Consensus       254 ~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~  333 (663)
T 1ry2_A          254 YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCAT  333 (663)
T ss_dssp             CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEE
T ss_pred             CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEE
Confidence            334456789999999999999999999999999876654 45567889999999999999999998 4567789999998


Q ss_pred             EEc-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccccccc
Q 012526           95 MYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR  167 (461)
Q Consensus        95 ~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      ++.       ++..+++.|+++++|+++++|+++..+.+......                                   
T Consensus       334 v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-----------------------------------  378 (663)
T 1ry2_A          334 LVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI-----------------------------------  378 (663)
T ss_dssp             EEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS-----------------------------------
T ss_pred             EEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcccc-----------------------------------
Confidence            874       46789999999999999999999987754211000                                   


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHH-HHHhC---Ceeeeecc
Q 012526          168 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIG---VKVQVGYG  243 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~-~~~~~---~~v~~~YG  243 (461)
                                                            ....+.++|.+++||+++++++.++ .+.+|   +++++.||
T Consensus       379 --------------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG  420 (663)
T 1ry2_A          379 --------------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYW  420 (663)
T ss_dssp             --------------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBC
T ss_pred             --------------------------------------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeEC
Confidence                                                  0023456799999999999987554 45577   89999999


Q ss_pred             cCCCccceeccCC---CCCCccccccCCCCeEEEEEeCCCCCcCCC-CCceEEEEec--CCccccccCCchhhccccCC-
Q 012526          244 LTESSPVIAARRP---TCNVLGSVGHPINHTEIKIVDAETNEVLPA-GSKGIVKVRG--SQVMQGYFKNPSATKQALDE-  316 (461)
Q Consensus       244 ~tE~~~~~~~~~~---~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~-g~~Gel~v~~--~~~~~gy~~~~~~~~~~f~~-  316 (461)
                      +||++..++...+   ....++++|+|+++++++|+|++++++++. |+.|||+|++  |+++.|||++|+.+.+.|.. 
T Consensus       421 ~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~  500 (663)
T 1ry2_A          421 QTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP  500 (663)
T ss_dssp             CTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS
T ss_pred             CccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcC
Confidence            9999876655443   234678999999999999999757888888 9999999999  58999999999998887643 


Q ss_pred             -CCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeE
Q 012526          317 -DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPG  391 (461)
Q Consensus       317 -~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~  391 (461)
                       +|||+|||+|++++          ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.++    +.+.
T Consensus       501 ~~g~y~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~  569 (663)
T 1ry2_A          501 YPGYYFTGDGAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVA  569 (663)
T ss_dssp             STTSEEEEEEEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCE
T ss_pred             CCCEEEcCCEEEEcC----------CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEE
Confidence             78999999999998          8999999999999997 899999999999999999999999999865    3678


Q ss_pred             EEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          392 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       392 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      |+|+++++......      ..+......++|+++++++|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       570 a~Vv~~~~~~~~~~------~~~~~~~l~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~T~sGKi~  627 (663)
T 1ry2_A          570 AFVVLKNKSSWSTA------TDDELQDIKKHLVFTVRKDIGPFA-----APKLIILVDDLPKTRSGKIM  627 (663)
T ss_dssp             EEEEEC------------------CCSHHHHHHHHHHHHTCTTT-----SCSEEEECSCCCBCTTSCBC
T ss_pred             EEEEEcCCCccccc------cchhHHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCccCch
Confidence            99998754210000      000000125788888998888887     66789999999999999974

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=7.9e-51  Score=454.08  Aligned_cols=337  Identities=29%  Similarity=0.455  Sum_probs=215.1

Q ss_pred             cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh----hcCCCCCcEEEEECChhhhHHHhh-hhhhhccC
Q 012526           17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRG   91 (461)
Q Consensus        17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G   91 (461)
                      .+.....++|+++|+|||||||.||+|+++|+++++.+.....    .+++.++|++++.+|++|.+++.. .+.++..|
T Consensus       217 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G  296 (979)
T 3tsy_A          217 IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVG  296 (979)
T ss_dssp             SCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHT
T ss_pred             CCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcC
Confidence            3444568899999999999999999999999999888766543    456889999999999999999865 45678999


Q ss_pred             eEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526           92 IELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  168 (461)
Q Consensus        92 ~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      +++++.   ++..+++.++++++|++.++|+++..+.+.....                                     
T Consensus       297 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------  339 (979)
T 3tsy_A          297 AAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE-------------------------------------  339 (979)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG-------------------------------------
T ss_pred             cEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc-------------------------------------
Confidence            999985   5788999999999999999999998886532111                                     


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHH-HHHHHh-CCeeeeecccCC
Q 012526          169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTE  246 (461)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~-~~~~~~-~~~v~~~YG~tE  246 (461)
                                                            ...+.++|.+++||+++++++. .+.+.+ ++++++.||+||
T Consensus       340 --------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE  381 (979)
T 3tsy_A          340 --------------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE  381 (979)
T ss_dssp             --------------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGG
T ss_pred             --------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhh
Confidence                                                  1234556999999999998874 455666 899999999999


Q ss_pred             CccceeccC-----CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCccc
Q 012526          247 SSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN  321 (461)
Q Consensus       247 ~~~~~~~~~-----~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~  321 (461)
                      ++.+++...     +.....+++|+|+++++++|+|+++++++++|+.|||+|+|++++.||+++|+.|.+.|+.++||+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~  461 (979)
T 3tsy_A          382 AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH  461 (979)
T ss_dssp             GCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred             hhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEE
Confidence            987765431     223456789999999999999998899999999999999999999999999999999998899999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcC
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  397 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~  397 (461)
                      |||+|++++          ||.++|+||.||+||+ +|++|+|.|||++|.+||+|.+++|++.+++    .+.++|++.
T Consensus       462 TGDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~  530 (979)
T 3tsy_A          462 TGDIGLIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKS  530 (979)
T ss_dssp             EEEEEEECT----------TSCEEEEEESCC-------------------------------------------------
T ss_pred             cCCEEEEcC----------CceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEEC
Confidence            999999998          8999999999999997 8999999999999999999999999997654    456777765


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      ++                ...+.++++++++++|+.|+     .|++|.++++.|.+.|||+.
T Consensus       531 ~~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi~  572 (979)
T 3tsy_A          531 KD----------------SELSEDDVKQFVSKQVVFYK-----RINKVFFTESIPKAPSGKIL  572 (979)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CC----------------CCCCHHHHHHHHHHhccccc-----CCeEEEEeCCcCcCCCCCee
Confidence            43                34567899999999999998     56689999999999999974

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.5e-50  Score=422.22  Aligned_cols=341  Identities=20%  Similarity=0.218  Sum_probs=273.3

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh--cCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY   96 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~   96 (461)
                      .....++|+++++|||||||.||+|++||+++.+.+......  +++.+++++++..|++|..++...+.++..|+++++
T Consensus       139 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~  218 (521)
T 3l8c_A          139 THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFA  218 (521)
T ss_dssp             SSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEE
Confidence            445678999999999999999999999999999887776655  678899999999999999998777778999999988


Q ss_pred             c------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           97 T------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        97 ~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                      .      ++..+++.+.+++++++.++|+++..+......                                        
T Consensus       219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------------  258 (521)
T 3l8c_A          219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF----------------------------------------  258 (521)
T ss_dssp             CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC----------------------------------------
T ss_pred             cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc----------------------------------------
Confidence            5      467899999999999999999998776542100                                        


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCc
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESS  248 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~  248 (461)
                                                         ....+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++
T Consensus       259 -----------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~  303 (521)
T 3l8c_A          259 -----------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEAT  303 (521)
T ss_dssp             -----------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGS
T ss_pred             -----------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHh
Confidence                                               0123455699999999998876 6666777 89999999999998


Q ss_pred             cceeccCCC-----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhcccc---CCCCcc
Q 012526          249 PVIAARRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWL  320 (461)
Q Consensus       249 ~~~~~~~~~-----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f---~~~~~~  320 (461)
                      ..++.....     .....++|+|.++++++|+| +++.++++|+.|||+|+||+++.||+++|+.+.+.|   +.++||
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~  382 (521)
T 3l8c_A          304 VALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY  382 (521)
T ss_dssp             SCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred             hhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence            776543321     12446799999999999999 568899999999999999999999999999999988   457899


Q ss_pred             cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC-----CeeEEEEE
Q 012526          321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-----RRPGAIIV  395 (461)
Q Consensus       321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~-----~~~~a~vv  395 (461)
                      +|||+|++++          +|.+++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++..+     +.+.|+|+
T Consensus       383 ~TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv  451 (521)
T 3l8c_A          383 HTGDIGSLTE----------DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIV  451 (521)
T ss_dssp             EEEEEEEECS----------SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEE
T ss_pred             eCCCEEEEeC----------CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEE
Confidence            9999999998          8999999999999997 899999999999999999999999998743     35678888


Q ss_pred             cChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          396 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +.++...         ..+......++++++++++|+.|+     .+++|.++++.|.+.|||+.
T Consensus       452 ~~~~~~~---------~~~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GKid  502 (521)
T 3l8c_A          452 VKDGVKE---------RFDRELELTKAIKASVKDHMMSYM-----MPSKFLYRDSLPLTPNGKID  502 (521)
T ss_dssp             ECTTSGG---------GCSSHHHHHHHHHHHSGGGSCGGG-----SCSEEEECSSCCBCTTSSBC
T ss_pred             ecCcccc---------ccccchhhHHHHHHHHHhhCcccc-----CCeEEEEecccCCCCCcCcc
Confidence            8653100         000000124678888888888887     66789999999999999984

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=5.4e-48  Score=441.96  Aligned_cols=327  Identities=22%  Similarity=0.270  Sum_probs=281.2

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--   97 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--   97 (461)
                      ....+++++||+|||||||.||||+++|+++.+. ......++++++|+++++.|++|..+....+.++..|+++++.  
T Consensus       602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~  680 (1304)
T 2vsq_A          602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE  680 (1304)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence            3457899999999999999999999999999866 4555678889999999999999999988888899999999985  


Q ss_pred             ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526           98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  173 (461)
Q Consensus        98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                          ++..+.+.++++++|++.++|+++..+.+...                                            
T Consensus       681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~--------------------------------------------  716 (1304)
T 2vsq_A          681 HTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE--------------------------------------------  716 (1304)
T ss_dssp             GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS--------------------------------------------
T ss_pred             hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch--------------------------------------------
Confidence                46789999999999999999999988764210                                            


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccce
Q 012526          174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI  251 (461)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~  251 (461)
                                                        ..+..+|.+++||++++... +++.+.+ +.+++|.||+||++..+
T Consensus       717 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  762 (1304)
T 2vsq_A          717 ----------------------------------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA  762 (1304)
T ss_dssp             ----------------------------------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred             ----------------------------------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence                                              01123489999999998765 6677776 47899999999998876


Q ss_pred             eccCC----CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC------CCccc
Q 012526          252 AARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLN  321 (461)
Q Consensus       252 ~~~~~----~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~------~~~~~  321 (461)
                      +....    ......++|+|++|++++|+| +.++++|.|+.|||+|+|+++++||+++|+.|++.|..      ++||+
T Consensus       763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yr  841 (1304)
T 2vsq_A          763 TAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYR  841 (1304)
T ss_dssp             EEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEE
T ss_pred             eeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEe
Confidence            65432    223446799999999999999 55889999999999999999999999999999999843      45999


Q ss_pred             CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcC
Q 012526          322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD  397 (461)
Q Consensus       322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~  397 (461)
                      |||+|++++          ||.++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++    ..+.|+++..
T Consensus       842 TGDl~~~~~----------dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~  910 (1304)
T 2vsq_A          842 TGDLARWLP----------DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR  910 (1304)
T ss_dssp             EEEEEEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS
T ss_pred             cCCeEEEcC----------CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC
Confidence            999999999          8999999999999998 899999999999999999999999998753    4678888875


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                        ...+.++++++++++|+.|+     .|..|.++++.|.+.|||+.
T Consensus       911 ------------------~~~~~~~l~~~l~~~Lp~ym-----vP~~~~~l~~lP~t~~GKid  950 (1304)
T 2vsq_A          911 ------------------TQLSAEDVKAHLKKQLPAYM-----VPQTFTFLDELPLTTNGKVN  950 (1304)
T ss_dssp             ------------------SSSCHHHHHHHHHHHSCGGG-----SCSEEEEESCCCCCSSCSSC
T ss_pred             ------------------CCCCHHHHHHHHHHhChHhh-----hccEEEEecccCCCCCcccC
Confidence                              23567899999999999998     55689999999999999985

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.6e-48  Score=411.33  Aligned_cols=340  Identities=21%  Similarity=0.317  Sum_probs=276.8

Q ss_pred             cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEE
Q 012526           17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELM   95 (461)
Q Consensus        17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~   95 (461)
                      .......++|+++|+|||||||.||||++||+++++.+......++++++|++++++|++|.+++.. .+.++..|++++
T Consensus       159 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v  238 (590)
T 3kxw_A          159 WQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAI  238 (590)
T ss_dssp             CCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEE
T ss_pred             CCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEE
Confidence            3445668899999999999999999999999999999999888999999999999999999999986 666789999998


Q ss_pred             Ec-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526           96 YT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  168 (461)
Q Consensus        96 ~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      +.       ++..+++.++++++|++.++|.++..+.+.......                                   
T Consensus       239 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-----------------------------------  283 (590)
T 3kxw_A          239 MMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK-----------------------------------  283 (590)
T ss_dssp             ECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG-----------------------------------
T ss_pred             EeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc-----------------------------------
Confidence            84       467899999999999999999999888764221100                                   


Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh------CCeeeee
Q 012526          169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVG  241 (461)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~------~~~v~~~  241 (461)
                                                           ....+.++|.+++||+++++++ +.+.+.+      +.++++.
T Consensus       284 -------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~  326 (590)
T 3kxw_A          284 -------------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPC  326 (590)
T ss_dssp             -------------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEE
T ss_pred             -------------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccc
Confidence                                                 0124456799999999999876 5555665      2479999


Q ss_pred             cccCCCccceeccCCC---------------------------CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEE
Q 012526          242 YGLTESSPVIAARRPT---------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV  294 (461)
Q Consensus       242 YG~tE~~~~~~~~~~~---------------------------~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v  294 (461)
                      ||+||++..++...+.                           ....+++|+|+++  ++|+|++++.++++|+.|||+|
T Consensus       327 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v  404 (590)
T 3kxw_A          327 YGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWV  404 (590)
T ss_dssp             EECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEE
T ss_pred             cccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEE
Confidence            9999999877654321                           1234678999998  8889988899999999999999


Q ss_pred             ecCCccccccCCchhhccccCC------CC--cccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchh
Q 012526          295 RGSQVMQGYFKNPSATKQALDE------DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE  366 (461)
Q Consensus       295 ~~~~~~~gy~~~~~~~~~~f~~------~~--~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~e  366 (461)
                      +||+++.||+++|+.|++.|..      +|  ||+|||+|+++           +|.++|.||.||+|++ +|++|+|.|
T Consensus       405 ~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----------dG~l~~~GR~dd~Ik~-~G~~v~p~e  472 (590)
T 3kxw_A          405 QSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIII-YGKNHYPQD  472 (590)
T ss_dssp             ESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----------TTEEEEEEESSCHHHH-HHHTTHHHH
T ss_pred             eCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----------CCEEEEEcCccceEEE-CCEecCHHH
Confidence            9999999999999999999853      24  99999999888           4999999999999998 899999999


Q ss_pred             HHHHH-hcCcccc--EEEEEeCCC---CeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHH-HhccCC
Q 012526          367 LEEAA-LRSSLIR--QIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCS  439 (461)
Q Consensus       367 IE~~l-~~~p~V~--~a~V~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~  439 (461)
                      ||++| ..||+|.  +|+|++.++   +.+.+++++.+.              .....+.+++.++++++|.+ ++.+. 
T Consensus       473 IE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~l~~~l~~~l~~~~~~p~-  537 (590)
T 3kxw_A          473 IEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNR--------------FMDDVAQDNLFNEIFELVYENHQLEV-  537 (590)
T ss_dssp             HHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCT--------------TCCHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred             HHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccc--------------cccchhHHHHHHHHHHHHHHHcCCce-
Confidence            99999 7899998  789888643   355677766532              00234668899999999996 55332 


Q ss_pred             CccccEEEe--cCCCCCCCCccc
Q 012526          440 FQIGPIHVV--DEPFTVNFLCLA  460 (461)
Q Consensus       440 ~~~~~~~~~--~~~~~~~~g~~~  460 (461)
                         ..+.++  ++.|.+.|||+.
T Consensus       538 ---~~i~~v~~~~lP~t~sGKi~  557 (590)
T 3kxw_A          538 ---HTIVLIPLKAMPHTTSGKIR  557 (590)
T ss_dssp             ---CEEEEEETTCSCCCSCHHHH
T ss_pred             ---eEEEEECCCccCcCCCcHHH
Confidence               145666  689999999973

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=6e-48  Score=406.26  Aligned_cols=341  Identities=17%  Similarity=0.152  Sum_probs=199.1

Q ss_pred             CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh--------cCCCCCcEEEEECChhhhHHHhhhhhhhccC
Q 012526           20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--------VPAENGDKFLSMLPPWHVYERACGYFIFSRG   91 (461)
Q Consensus        20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~--------~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G   91 (461)
                      ...+++++++|+|||||||.||||+++|+++.+.+..+...        +.+...+++++..|++|..++...+.++..|
T Consensus       170 ~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  249 (562)
T 3ite_A          170 NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFG  249 (562)
T ss_dssp             CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTT
T ss_pred             cCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcc
Confidence            34567889999999999999999999999998877654432        4577889999999999998888778889999


Q ss_pred             eEEEEcc----hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccccccc
Q 012526           92 IELMYTA----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR  167 (461)
Q Consensus        92 ~~~~~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      +++++.+    +..+++.++++++|++.++|+++..+...                                        
T Consensus       250 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----------------------------------------  289 (562)
T 3ite_A          250 LCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----------------------------------------  289 (562)
T ss_dssp             CEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----------------------------------------
T ss_pred             cEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----------------------------------------
Confidence            9998853    46788999999999999999987544210                                        


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-HHhCCeeeeecccCC
Q 012526          168 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTE  246 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-~~~~~~v~~~YG~tE  246 (461)
                                                             ...+.++|.+++||+++++++.+.+ +.+++.+++.||+||
T Consensus       290 ---------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE  330 (562)
T 3ite_A          290 ---------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE  330 (562)
T ss_dssp             ---------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGG
T ss_pred             ---------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccch
Confidence                                                   0234556999999999999885555 445899999999999


Q ss_pred             CccceeccCC-CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCC--cccCC
Q 012526          247 SSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTG  323 (461)
Q Consensus       247 ~~~~~~~~~~-~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~--~~~TG  323 (461)
                      ++..++.... .....+++|+|+++++++++|+++++++++|+.|||+|+|++++.|||++|+.+...+ .+|  ||+||
T Consensus       331 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TG  409 (562)
T 3ite_A          331 VTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTG  409 (562)
T ss_dssp             GCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEE
T ss_pred             heeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-CCCCEEEecC
Confidence            9876655432 3345678999999999999998889999999999999999999999999999988766 355  99999


Q ss_pred             ceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcC-ccccEEEEEeCCCCeeE----EEEEcC-
Q 012526          324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQDQRRPG----AIIVPD-  397 (461)
Q Consensus       324 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~-p~V~~a~V~~~~~~~~~----a~vv~~-  397 (461)
                      |+|++++          ||+++|.||.||+|++ +|++|+|.|||++|.+| |.+.+++|++.+++..+    +.++.. 
T Consensus       410 Dlg~~d~----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~  478 (562)
T 3ite_A          410 DIVRMDA----------DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASS  478 (562)
T ss_dssp             EEEEECT----------TSCEEEEEEC-----------------------------------------------------
T ss_pred             CEEEEcC----------CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecc
Confidence            9999998          8999999999999997 99999999999999998 78889998887765432    233322 


Q ss_pred             hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCC-CCCccc
Q 012526          398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV-NFLCLA  460 (461)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~  460 (461)
                      ........    ...........++|+++|+++|+.|+     .|+.|.++++.|.. .|||+.
T Consensus       479 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~L~~y~-----~P~~i~~v~~lP~t~~~GKi~  533 (562)
T 3ite_A          479 GAAVRGEL----RWINENYKEINNSLRQACEQTLPAYM-----VPDFIIPISFIPLRDTSAKTD  533 (562)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             cccccccc----cccccchhhHHHHHHHHHHhhCCccc-----CCcEEEEeccCCCCCCCCcch
Confidence            21111000    00011122345689999999999998     66789999999966 899974

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=5.6e-48  Score=383.63  Aligned_cols=300  Identities=14%  Similarity=0.119  Sum_probs=251.8

Q ss_pred             CCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcc-hhhH
Q 012526           24 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNL  102 (461)
Q Consensus        24 ~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~  102 (461)
                      .+|++||+|||||||.||||++||+++.+++......++++++|++++++|++|++++...+.++..|+++++.+ ....
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~  115 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP  115 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH
Confidence            478999999999999999999999999999999999999999999999999999999988888888898888753 3456


Q ss_pred             HHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHHHHH
Q 012526          103 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  182 (461)
Q Consensus       103 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (461)
                      ++.++++++|++.++|+++..+++....                                                    
T Consensus       116 ~~~i~~~~~t~~~~~P~~l~~ll~~~~~----------------------------------------------------  143 (358)
T 4gs5_A          116 LAGLDHADFDFVAMVPMQLQSILENSAT----------------------------------------------------  143 (358)
T ss_dssp             TTTCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------------------
T ss_pred             HHHHHHhCCeEEEcChHHHHHhhccccc----------------------------------------------------
Confidence            7789999999999999999888653111                                                    


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCCCCCCcc
Q 012526          183 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG  262 (461)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  262 (461)
                                              ...+.++|.+++||+++++++.+..+.+++++++.||+||++..++.........+
T Consensus       144 ------------------------~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g  199 (358)
T 4gs5_A          144 ------------------------SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEAS  199 (358)
T ss_dssp             ------------------------GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCC
T ss_pred             ------------------------cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccccccccc
Confidence                                    02334458999999999999877777789999999999999988887776666778


Q ss_pred             ccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCC
Q 012526          263 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG  342 (461)
Q Consensus       263 ~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G  342 (461)
                      .+|.+.|++++.+.+           .|||+++++..                .++||+|||+|++++          +|
T Consensus       200 ~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~~d~----------~g  242 (358)
T 4gs5_A          200 ELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVEIHG----------NA  242 (358)
T ss_dssp             SCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEEECS----------SE
T ss_pred             eeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcccccc----------Cc
Confidence            899999999887643           58999987532                478999999999998          67


Q ss_pred             eEEEeccccceEEcCCceeecchhHHHHH---hcCccccEEEEE-eCCCC----eeEEEEEcChHHHHHHHHHcCCCcCC
Q 012526          343 VLVLEGRAKDTIVLSTGENVEPLELEEAA---LRSSLIRQIVVI-GQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  414 (461)
Q Consensus       343 ~l~i~GR~~d~i~~~~G~~v~~~eIE~~l---~~~p~V~~a~V~-~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  414 (461)
                       ++++||.||+|++ +|++|+|.|||++|   .+||+|.+|+|+ +.+++    .+.++|+...                
T Consensus       243 -~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~----------------  304 (358)
T 4gs5_A          243 -FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM----------------  304 (358)
T ss_dssp             -EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC----------------
T ss_pred             -eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC----------------
Confidence             6777999999997 89999999999877   468999998877 44444    4556666542                


Q ss_pred             ccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          415 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       415 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                       .....++|+++++++|+.|+     .|++|.++++.|.+.|||+.
T Consensus       305 -~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  344 (358)
T 4gs5_A          305 -PEALTERLTAEIRSRVSTYE-----NPKHIYFAKAFAKTQTDKID  344 (358)
T ss_dssp             -CHHHHHHHHHHHHHHSCGGG-----SCSCEEEESSCCBCTTSCBC
T ss_pred             -CCcCHHHHHHHHHhhCCCCC-----CceEEEEECCcCCCCCCChh
Confidence             23456789999999999998     66789999999999999984

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=7.9e-45  Score=370.71  Aligned_cols=346  Identities=16%  Similarity=0.118  Sum_probs=260.0

Q ss_pred             ccccccccccccCccc--CCCCCCC-CCeEEEEecCCCCCCchhheechHHHHHHHHHH---hhhcCCCCCcEEEEECCh
Q 012526            2 LFSLPILTPVIAGKHY--KYETIGS-DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPP   75 (461)
Q Consensus         2 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~---~~~~~~~~~d~~~~~~p~   75 (461)
                      |..+|++++......+  .....++ +++++++|||||||.||+|+++|+++.+.+..+   ...+++.++|++++.+|+
T Consensus        60 l~~lP~~~~~~l~~~~p~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  139 (436)
T 3qov_A           60 IRKIPFTTKSDMRANYPFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGY  139 (436)
T ss_dssp             GGGSCCBCHHHHHHTTTTTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCC
T ss_pred             HHHCCCCCHHHHHhcCCCccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECccc
Confidence            3456777665433332  3334566 899999999999999999999999997766554   344588999999999998


Q ss_pred             hhhHHHh-hhhhhhccCeEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhH
Q 012526           76 WHVYERA-CGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF  151 (461)
Q Consensus        76 ~~~~~~~-~~~~~l~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (461)
                      .|..+.. ..+.++..|+++++.   ++..+++.++++++|+++++|+++..|++.......+                 
T Consensus       140 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-----------------  202 (436)
T 3qov_A          140 GMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID-----------------  202 (436)
T ss_dssp             TTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-----------------
T ss_pred             ccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-----------------
Confidence            6655544 456678899998875   5788999999999999999999999998765442211                 


Q ss_pred             HHHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHH
Q 012526          152 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF  230 (461)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~  230 (461)
                                                                              ..+..+|.+++||+++++++ +.+
T Consensus       203 --------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~  226 (436)
T 3qov_A          203 --------------------------------------------------------PRETTLKTLVIGAEPHTDEQRRKI  226 (436)
T ss_dssp             --------------------------------------------------------TTSSSCCEEEEESSCCCHHHHHHH
T ss_pred             --------------------------------------------------------cccCCccEEEEeCCcCCHHHHHHH
Confidence                                                                    12345699999999999987 445


Q ss_pred             HHHhCCeeeeecccCCCccc-eeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchh
Q 012526          231 YEAIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA  309 (461)
Q Consensus       231 ~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~  309 (461)
                      .+.+|+++++.||+||+++. ......   .....|.+.+++.++|+|+++++++++|+.|||+|+|+            
T Consensus       227 ~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------  291 (436)
T 3qov_A          227 ERMLNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------  291 (436)
T ss_dssp             HHHHTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------
T ss_pred             HHHhCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------
Confidence            55679999999999999544 333221   11236777889999999988999999999999999983            


Q ss_pred             hccccCCCCcccCCceEeeccCCC-CCcccccCCe---EEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeC
Q 012526          310 TKQALDEDGWLNTGDIGWIAPHHS-RGRSRRCGGV---LVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ  385 (461)
Q Consensus       310 ~~~~f~~~~~~~TGDlg~~~~~~~-~~~~~~~~G~---l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~  385 (461)
                      +...| .++||+|||+|+++++.| ||+     .+   ++|.||.||+|++ +|++|+|.+||++|.+||+|.+++|++.
T Consensus       292 ~~~~~-~~~~y~TGDl~~~~~~gc~cG~-----~~~~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~  364 (436)
T 3qov_A          292 DREMM-PLIRYRTRDLTRILPGKCPCGR-----THLRIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITL  364 (436)
T ss_dssp             SCCSS-CCCSEEEEEEECEECSCCTTCC-----CSCEECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEE
T ss_pred             CcCCc-eEEEEEcCCEEEEcCCCCCCCC-----CccccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEE
Confidence            23334 578999999999997422 221     13   5999999999998 8999999999999999999999999987


Q ss_pred             CC----CeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCCCCCcc
Q 012526          386 DQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  459 (461)
Q Consensus       386 ~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~  459 (461)
                      ++    +.+.++|+++ +.            ......+.++++++++++|+++..    .+..+.+++  +.|.+. ||+
T Consensus       365 ~~~~~~~~l~a~v~~~-~~------------~~~~~~~~~~l~~~l~~~l~~~~~----~p~~i~~v~~~~lP~t~-GKi  426 (436)
T 3qov_A          365 ETVNNQDEMIVEVELS-DL------------STDNYIELEKIRRDIIRQLKDEIL----VTPKVKLVKKGSLPQSE-GKA  426 (436)
T ss_dssp             EEETTEEEEEEEEEEC-TT------------CCCCHHHHHHHHHHHHHHHHHHHS----SCCEEEEECTTCCC-------
T ss_pred             EcCCCCcEEEEEEEEc-Cc------------cccchhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCcccCcC-Ccc
Confidence            53    5778888886 30            000112357899999999999931    345899999  889888 997


Q ss_pred             c
Q 012526          460 A  460 (461)
Q Consensus       460 ~  460 (461)
                      .
T Consensus       427 ~  427 (436)
T 3qov_A          427 V  427 (436)
T ss_dssp             -
T ss_pred             e
Confidence            4

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=1.4e-44  Score=369.53  Aligned_cols=342  Identities=18%  Similarity=0.169  Sum_probs=264.7

Q ss_pred             cccccccccccCcccC--CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECCh-h
Q 012526            3 FSLPILTPVIAGKHYK--YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-W   76 (461)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~-~   76 (461)
                      .++|++++......++  ....+++++++++|||||||.||+|+++|+++...+..+.   ..+++.++|++++.+|+ +
T Consensus        68 ~~lP~~~~~~l~~~~p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~  147 (443)
T 2y4o_A           68 AKFPFSTKNDLRDNYPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGL  147 (443)
T ss_dssp             GGSCCBCHHHHHTTTTTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred             HHCCCCcHHHHHhhCCCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcc
Confidence            3577777654333332  3445778999999999999999999999999877654433   36788999999999998 5


Q ss_pred             hhHHHhhhhhhhccCeEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHH
Q 012526           77 HVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  153 (461)
Q Consensus        77 ~~~~~~~~~~~l~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (461)
                      |..++...+.++..|++++..   ++..+++.++++++|++.++|+++..|++.......+                   
T Consensus       148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------------------  208 (443)
T 2y4o_A          148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD-------------------  208 (443)
T ss_dssp             SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred             cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence            777776677778899998875   5788999999999999999999999988754332110                   


Q ss_pred             HHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HHH
Q 012526          154 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYE  232 (461)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~~  232 (461)
                                                                            ..+..+|.+++||+++++++.+ +.+
T Consensus       209 ------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~  234 (443)
T 2y4o_A          209 ------------------------------------------------------PAESSLKIGIFGAEPWTQALRNEVET  234 (443)
T ss_dssp             ------------------------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHH
T ss_pred             ------------------------------------------------------cccCCceEEEECCCcCCHHHHHHHHH
Confidence                                                                  0124458999999999998744 445


Q ss_pred             HhCCeeeeecccCCCccc-eeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhc
Q 012526          233 AIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  311 (461)
Q Consensus       233 ~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~  311 (461)
                      .+|+++++.||+||+++. ......... .+ .+.+.+++.++|+|+++++++++|+.|||+|++.            +.
T Consensus       235 ~~g~~v~~~YG~TE~~g~~~~~~~~~~~-~g-~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~  300 (443)
T 2y4o_A          235 RVGIDALDIYGLSEVMGPGVACECVETK-DG-PVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TK  300 (443)
T ss_dssp             HHTCEEEEEEEETTTTEEEEEEECTTTC-CS-EEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SC
T ss_pred             HhCcCEEeccCchhhcCCeEEeccCCCC-Cc-eEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------Cc
Confidence            679999999999997432 332222111 12 4557789999999988899999999999999973            23


Q ss_pred             cccCCCCcccCCceEeeccCCCCCcccccC-CeE-----EEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeC
Q 012526          312 QALDEDGWLNTGDIGWIAPHHSRGRSRRCG-GVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ  385 (461)
Q Consensus       312 ~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~  385 (461)
                      ..| +++||+|||+|++++          + |.+     ++.||.||+|++ +|++|+|.+||++|.+||+|.+++|++.
T Consensus       301 ~~~-p~~~y~TGDl~~~~~----------~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~  368 (443)
T 2y4o_A          301 EAM-PVIRYRTRDLTALLP----------PTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITL  368 (443)
T ss_dssp             SSS-CCSSEEEEEEECEEC----------CSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred             ccC-hhheeecCCEEEEcC----------CCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEE
Confidence            344 578999999999998          5 775     899999999997 8999999999999999999999988875


Q ss_pred             C----CCeeEEEEEcCh--HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEe--cCCCCCCCC
Q 012526          386 D----QRRPGAIIVPDK--EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFL  457 (461)
Q Consensus       386 ~----~~~~~a~vv~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~g  457 (461)
                      +    .+.+.++|++.+  +.             .....+.++++++++++|+.+..    .+.++.++  ++.|.+.||
T Consensus       369 ~~~~~~~~~~a~v~~~~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~~G  431 (443)
T 2y4o_A          369 SRDGHMDRLDLAVELRSEAAA-------------SVTDGERAALARELQHRIKTMVG----VSSGVTVLAAGGIPATATG  431 (443)
T ss_dssp             EEETTEEEEEEEEEECHHHHT-------------TCCHHHHHHHHHHHHHHHHHHTC----CCCEEEEECTTCSCCCTTS
T ss_pred             ecCCCCceEEEEEEECCcccc-------------cchhhHHHHHHHHHHHHHHHHhC----CceEEEEeCCCcccCccCC
Confidence            3    356778888765  20             00123457899999999998751    23567888  489999999


Q ss_pred             ccc
Q 012526          458 CLA  460 (461)
Q Consensus       458 ~~~  460 (461)
                      |+.
T Consensus       432 Ki~  434 (443)
T 2y4o_A          432 KAR  434 (443)
T ss_dssp             CCC
T ss_pred             cce
Confidence            974

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=3.1e-44  Score=366.40  Aligned_cols=342  Identities=19%  Similarity=0.177  Sum_probs=262.9

Q ss_pred             cccccccccccCccc--CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECCh-h
Q 012526            3 FSLPILTPVIAGKHY--KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-W   76 (461)
Q Consensus         3 ~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~-~   76 (461)
                      ..+|++++......+  .....+++++++++|||||||.||+|+++|+++...+..+.   ..+++.++|++++.+|+ +
T Consensus        66 ~~lP~~~~~~l~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  145 (437)
T 2y27_A           66 SRFPFTTKGDLRDSYPFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGL  145 (437)
T ss_dssp             GGSCCBCHHHHHHTTTTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred             HHCCCCCHHHHHhcCCCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccc
Confidence            356777665333322  23455778999999999999999999999999877654433   35788999999999998 7


Q ss_pred             hhHHHhhhhhhhccCeEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHH
Q 012526           77 HVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  153 (461)
Q Consensus        77 ~~~~~~~~~~~l~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (461)
                      |..++...+.++..|++++..   ++..+++.++++++|+++++|+++..|++.......+                   
T Consensus       146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------------------  206 (437)
T 2y27_A          146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD-------------------  206 (437)
T ss_dssp             SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred             cccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence            888877777788999998874   5788999999999999999999999998754332110                   


Q ss_pred             HHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-H
Q 012526          154 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-E  232 (461)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-~  232 (461)
                                                                            ..+..+|.+++||+++++++.+.. +
T Consensus       207 ------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~  232 (437)
T 2y27_A          207 ------------------------------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQ  232 (437)
T ss_dssp             ------------------------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHH
T ss_pred             ------------------------------------------------------cccCCeeEEEEcCccCCHHHHHHHHH
Confidence                                                                  012345899999999999875544 5


Q ss_pred             HhCCeeeeecccCCCccc-eeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhc
Q 012526          233 AIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  311 (461)
Q Consensus       233 ~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~  311 (461)
                      .+|+++++.||+||+++. ++....... . ..+.+.+++.++|+|+++++++++|+.|||+|++.            +.
T Consensus       233 ~~g~~v~~~YG~TE~~g~~~~~~~~~~~-~-g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~  298 (437)
T 2y27_A          233 RMGIDAVDIYGLSEVMGPGVASECVETK-D-GPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TK  298 (437)
T ss_dssp             HHTSEEEEEEEETTTTEEEEEECCTTTC-S-SCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SC
T ss_pred             HHCcCEEecCCchhhcCCeeEEecCCCC-C-ceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------Cc
Confidence            679999999999998432 333222111 1 25667789999999988899999999999999973            23


Q ss_pred             cccCCCCcccCCceEeeccCCCCCcccccCCeE-----EEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC
Q 012526          312 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD  386 (461)
Q Consensus       312 ~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l-----~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~  386 (461)
                      ..| +++||+|||+|+++++         +|.+     ++.||.||+|++ +|++|+|.+||++|.+||+|.+++|++.+
T Consensus       299 ~~~-~~~~y~TGDl~~~~~~---------~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~  367 (437)
T 2y27_A          299 EAL-PIIRYRTRDLTRLLPG---------TARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLT  367 (437)
T ss_dssp             SSS-CCCSEEEEEEECEECC---------SSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEE
T ss_pred             CCc-hhheeecCCEEEEeCC---------CCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEe
Confidence            344 5789999999999872         2774     899999999997 89999999999999999999988888743


Q ss_pred             ----CCeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCCCCCccc
Q 012526          387 ----QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCLA  460 (461)
Q Consensus       387 ----~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~  460 (461)
                          .+.+.++|++.++.             .....+.++++++++++|+.+..    .+..+.+++  +.|.+. ||+.
T Consensus       368 ~~~~~~~l~a~v~~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~-GKi~  429 (437)
T 2y27_A          368 KEGPLDVLTLNVEPCPET-------------APDTAAIQVAKQALAYDIKSLIG----VTAVINVLPVNGIERSV-GKAR  429 (437)
T ss_dssp             EETTEEEEEEEECBCTTT-------------TTCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCTTCSCCCS-SSCC
T ss_pred             ecCCCceEEEEEEECCCc-------------cchhhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCCccCCC-Ccce
Confidence                45677888876430             00113457899999999999851    335688884  778777 9974

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.3e-38  Score=328.41  Aligned_cols=249  Identities=23%  Similarity=0.326  Sum_probs=199.6

Q ss_pred             cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCC------CcEEEEECChhhhHHHhh-hhhhhc
Q 012526           17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN------GDKFLSMLPPWHVYERAC-GYFIFS   89 (461)
Q Consensus        17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~------~d~~~~~~p~~~~~~~~~-~~~~l~   89 (461)
                      .......++++++|+|||||||.||||++||+++.+++......+++.+      +|++++++|++|.+++.. .+.++.
T Consensus       175 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~  254 (480)
T 3t5a_A          175 YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPIL  254 (480)
T ss_dssp             -CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHH
T ss_pred             CCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHH
Confidence            3445567889999999999999999999999999998888888788777      999999999999999765 567799


Q ss_pred             cCeEEEEc-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012526           90 RGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEG  162 (461)
Q Consensus        90 ~G~~~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (461)
                      .|+++++.       ++..+++.++++++| +.++|+++..++.......                              
T Consensus       255 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~------------------------------  303 (480)
T 3t5a_A          255 GGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD------------------------------  303 (480)
T ss_dssp             HTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG------------------------------
T ss_pred             cCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc------------------------------
Confidence            99999884       567889999999999 8889998877765321000                              


Q ss_pred             cccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC------
Q 012526          163 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG------  235 (461)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~------  235 (461)
                                                               ......+.++|.+++||+++++++ +++.+.++      
T Consensus       304 -----------------------------------------~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~  342 (480)
T 3t5a_A          304 -----------------------------------------DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQE  342 (480)
T ss_dssp             -----------------------------------------GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCG
T ss_pred             -----------------------------------------cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCCh
Confidence                                                     000134566799999999999886 56666663      


Q ss_pred             CeeeeecccCCCccceeccCCCC-------------------------CCccccccCCCCeEEEEEeCCCCCcCCCCCce
Q 012526          236 VKVQVGYGLTESSPVIAARRPTC-------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKG  290 (461)
Q Consensus       236 ~~v~~~YG~tE~~~~~~~~~~~~-------------------------~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~G  290 (461)
                      ..+++.||+||++..++......                         ...+++|+|++ ++++|+|++++++++.|+.|
T Consensus       343 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~G  421 (480)
T 3t5a_A          343 RVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVG  421 (480)
T ss_dssp             GGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCE
T ss_pred             hhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEE
Confidence            47999999999998777654321                         23458999999 99999998889999999999


Q ss_pred             EEEEecCCccccccCCchhhccccC-----------CCCcccCCceEeeccCCCCCcccccCCeEEEecc
Q 012526          291 IVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR  349 (461)
Q Consensus       291 el~v~~~~~~~gy~~~~~~~~~~f~-----------~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR  349 (461)
                      ||+|+||+++.||+++|+.|++.|+           .++||+|||+|+++           ||+++|+||
T Consensus       422 El~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-----------dG~l~~~GR  480 (480)
T 3t5a_A          422 EIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR  480 (480)
T ss_dssp             EEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-----------TTEEEECC-
T ss_pred             EEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-----------CCEEEEeCC
Confidence            9999999999999999999999985           56799999999984           699999998

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=1.6e-30  Score=259.05  Aligned_cols=244  Identities=18%  Similarity=0.159  Sum_probs=174.9

Q ss_pred             CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHH---hhhcCCCCCcEEEEECCh-hhhHHHhhhhhhhccCeEEEE
Q 012526           21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMY   96 (461)
Q Consensus        21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~---~~~~~~~~~d~~~~~~p~-~~~~~~~~~~~~l~~G~~~~~   96 (461)
                      ..+++++++++|||||||.||+|+++|+++...+..+   ...+++.++|++++.+|+ +|..++...+.++..|+.++.
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~  166 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS  166 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence            4578899999999999999999999999998887744   355678899999999999 999999887777888884443


Q ss_pred             c--chh-----------------------hHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhH
Q 012526           97 T--AVR-----------------------NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF  151 (461)
Q Consensus        97 ~--~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (461)
                      .  ++.                       .+++.++++++|++.++|+++..|++......                   
T Consensus       167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~-------------------  227 (369)
T 3hgu_A          167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVL-------------------  227 (369)
T ss_dssp             CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHH-------------------
T ss_pred             ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhc-------------------
Confidence            2  344                       77779999999999999999998876421110                   


Q ss_pred             HHHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHH
Q 012526          152 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF  230 (461)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~  230 (461)
                                                                              ..+.++|.+++||+++++++ +.+
T Consensus       228 --------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~  251 (369)
T 3hgu_A          228 --------------------------------------------------------QMKQSLAQITLGGTELNLDEIKFI  251 (369)
T ss_dssp             --------------------------------------------------------HHHHHCSEEEEESSCCCHHHHHHH
T ss_pred             --------------------------------------------------------cccCCeeEEEECCccCCHHHHHHH
Confidence                                                                    11122489999999999887 555


Q ss_pred             H-HHh-CCeeeeecccCCCccceeccCCCCCCccccccC------CCCeEEEEEeCCCCCcCCCCCceEEEEecCCcccc
Q 012526          231 Y-EAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP------INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG  302 (461)
Q Consensus       231 ~-~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~------~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~g  302 (461)
                      . +.+ ++++++.||+||+++++..++..     ++|++      .++++++|+|+++++++++|+.|||+|++..-...
T Consensus       252 ~~~~~p~~~v~~~YG~TE~~~~~~~~~~~-----~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~  326 (369)
T 3hgu_A          252 ASEILPDCEFSASYGSTSALGVSRSLLIT-----SESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAF  326 (369)
T ss_dssp             HHHTCTTSEEEEEEEEGGGTEEEEECCBC-----TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEE
T ss_pred             HHHhCCCcEEEcccCchhhhcceeccccc-----cCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCcccc
Confidence            5 567 89999999999998766443211     47888      99999999998789999999999999997421111


Q ss_pred             ccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCce
Q 012526          303 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE  360 (461)
Q Consensus       303 y~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~  360 (461)
                      +              ..|+|||+++..+. ..+..++....+..++|.++..++ .|.
T Consensus       327 l--------------~ry~tgD~~~~~~~-~~g~~~d~~~~v~~~~~~~~~~~i-~gv  368 (369)
T 3hgu_A          327 Y--------------PRVAERDTAIRLPG-VSGFAGDRLADIEPLKISEGRKVI-EGV  368 (369)
T ss_dssp             E--------------EEEEEEEEEEEECC-STTCSSCEEEEEEECC------------
T ss_pred             c--------------ccccCCceEEEecC-CCCCcCcccccceeccccCCCcee-eec
Confidence            1              13899999988752 223333223356677888877776 553

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.97  E-value=1.5e-09  Score=87.60  Aligned_cols=93  Identities=13%  Similarity=0.035  Sum_probs=64.4

Q ss_pred             ccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHH
Q 012526          348 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT  423 (461)
Q Consensus       348 GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l  423 (461)
                      .|.||+|++ +|.||+|.|||++|.+||+|.++++++.+++    .+.++++..+.             ........+++
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~-------------~~~~~~~~~~l   66 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQL-------------FTDDYGRLQAL   66 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTT-------------CCCCHHHHHHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeec-------------cccccchhhhh
Confidence            489999998 8999999999999999999999999987543    45566666532             11112234567


Q ss_pred             HHHHHHHHHHHhccCCCccccEEEec--CCCCCCCCcc
Q 012526          424 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  459 (461)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~  459 (461)
                      .+.+++++..+..-   . .++.+++  +.|++ +||+
T Consensus        67 ~~~i~~~l~~~~gv---~-~~v~~v~~~~lPrt-sGKi   99 (109)
T 3lax_A           67 TREITRQLKDEILV---T-PRVKLVPKGALPKS-EGKA   99 (109)
T ss_dssp             HHHHHHHHHHHHSS---C-CEEEEECTTCSCCC----C
T ss_pred             HHHHHHHHHHHhCC---c-cceEEEcCCeecCC-CCCc
Confidence            77788888776521   1 3577775  57775 7996

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.87  E-value=9.5e-09  Score=106.22  Aligned_cols=145  Identities=13%  Similarity=0.163  Sum_probs=90.3

Q ss_pred             ceeEEeccCCCchhHHHHHHHh-CCeee-eecccCCCccceeccCCCCCCcccccc-CCCC-eEEEEEeCCCC-------
Q 012526          213 SKAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN-------  281 (461)
Q Consensus       213 ~~~i~~gg~~l~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~d~~~~-------  281 (461)
                      +..++.||  +.+-...+..-+ +.+++ ..|++||+- ++....+.+ .++..+. ..++ .-.+.++.+..       
T Consensus       307 l~~~~tG~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~-~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~  382 (609)
T 4b2g_A          307 LDVIVTGA--MAQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMS-KPSEVSYTIMPNMAYFEFLPHEHSSIPLSRD  382 (609)
T ss_dssp             EEEECSGG--GGGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTS-CGGGCCEEECTTSCEEEEEEGGGTTSCCCSS
T ss_pred             EEEEccCC--hHHHHHHHHHHcCCCccccCccccccee-eeeecCCCC-CcccCceeecCCcEEEEEEeccccccccccC
Confidence            34555555  444444444333 56666 899999963 333222221 1111121 1222 44556653322       


Q ss_pred             --------CcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccce
Q 012526          282 --------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT  353 (461)
Q Consensus       282 --------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~  353 (461)
                              ..+..|+.+||+|+..   .|+|.              |++||++++.....      ....+.|.||.+++
T Consensus       383 ~~~~~v~l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~------~~p~i~~~gR~~~~  439 (609)
T 4b2g_A          383 SPPRLVDLAHVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGFHN------SAPQFHFVRRKNVL  439 (609)
T ss_dssp             SCCCCEEGGGCCTTCEEEEEEECT---TSCCS--------------EEEEEEEEEEEEET------TEEEEEEEEETTCC
T ss_pred             CCCccccHhHcCCCCeEEEehhhh---hhhhh--------------eecCCEEEEeecCC------CCcEEEEEEecCCe
Confidence                    2467899999999864   35543              99999999874110      13689999999999


Q ss_pred             EEcCCceeecchhHHHHHhcC------c--cccEEEEEeC
Q 012526          354 IVLSTGENVEPLELEEAALRS------S--LIRQIVVIGQ  385 (461)
Q Consensus       354 i~~~~G~~v~~~eIE~~l~~~------p--~V~~a~V~~~  385 (461)
                      |.+ .|+++++.+||+++.+.      .  .|.+..++..
T Consensus       440 l~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d  478 (609)
T 4b2g_A          440 LSI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFAD  478 (609)
T ss_dssp             BCS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEE
T ss_pred             EEc-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecC
Confidence            997 89999999999999842      2  3567776543

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.82  E-value=1.9e-07  Score=96.13  Aligned_cols=138  Identities=11%  Similarity=0.089  Sum_probs=85.4

Q ss_pred             CCchhHHHHHHHh-CCeee-eecccCCCccceeccCCCCCCcccccc-CCCC-eEEEEEeCCCC----------CcCCCC
Q 012526          222 SLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN----------EVLPAG  287 (461)
Q Consensus       222 ~l~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~d~~~~----------~~~~~g  287 (461)
                      .+.+-...+..-+ +.+++ ..|++||+ .+.....+.+. ++..+. ..|+ .-.+.++.+..          ..+..|
T Consensus       314 ~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~-~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G  391 (581)
T 4epl_A          314 SMEPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRLS-PEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIG  391 (581)
T ss_dssp             GGGGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTSC-TTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTT
T ss_pred             ChHHHHHHHHHHcCCCccccCceeccce-eeeeecCCCCC-ccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCC
Confidence            3444444444434 56766 89999996 33332222211 111111 2222 33455542211          246789


Q ss_pred             CceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhH
Q 012526          288 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL  367 (461)
Q Consensus       288 ~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eI  367 (461)
                      +.+||+|+...   |.|.              |++||++++...+..      ...+.|.||.++++.+ .|++++..+|
T Consensus       392 ~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~------~p~~~~~gR~~~~l~~-~Ge~~~~~~v  447 (581)
T 4epl_A          392 EEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNN------TPQLKFICRRNLILSI-NIDKNTERDL  447 (581)
T ss_dssp             CEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETT------EEEEEEEEETTCCBCS-SSCCBCHHHH
T ss_pred             CeEEEEEeecc---ceee--------------EEcCCEEEEecccCC------CcEEEEEeecCCeEEe-eeeECCHHHH
Confidence            99999998652   4332              999999998752110      2479999999999998 8999999999


Q ss_pred             HHHHhcC------c--cccEEEEEeC
Q 012526          368 EEAALRS------S--LIRQIVVIGQ  385 (461)
Q Consensus       368 E~~l~~~------p--~V~~a~V~~~  385 (461)
                      |+++.+.      .  .|.+..++..
T Consensus       448 ~~al~~a~~~l~~~~~~l~eft~~~d  473 (581)
T 4epl_A          448 QLSVESAAKRLSEEKIEVIDFSSYID  473 (581)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred             HHHHHHHHHhhcccCCeEEEEEEecC
Confidence            9999852      2  3667776654

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.78  E-value=3.6e-07  Score=94.31  Aligned_cols=145  Identities=12%  Similarity=0.188  Sum_probs=87.1

Q ss_pred             ceeEEeccCCCchhHHHHHHHh-CCeee-eecccCCCccceeccCCCCCCcccccc-CCCC-eEEEEEeCCCC-------
Q 012526          213 SKAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN-------  281 (461)
Q Consensus       213 ~~~i~~gg~~l~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~d~~~~-------  281 (461)
                      +..++.||  +.+-...+..-+ +.+++ ..|++||+ .+.....+.+ .+...+. ..++ +-.+.++.+..       
T Consensus       302 l~~~~~G~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~-~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~  377 (581)
T 4eql_A          302 IETVVTGS--MGQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLC-KPEDVSYTFMPNMSYFEFIPMDGGDKNDVVD  377 (581)
T ss_dssp             EEEECSGG--GGGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTS-CGGGCCEEECTTSSEEEEEECSTTCCSSCEE
T ss_pred             EEEEcCCC--hHHHHHHHHHHcCCCccccCccccccc-eeeeccCCCC-CcccCceeecCCcEEEEEEeccccCCCcEeC
Confidence            45566666  444444444434 56766 89999995 3332222221 1111221 1222 44566653221       


Q ss_pred             -CcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCce
Q 012526          282 -EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE  360 (461)
Q Consensus       282 -~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~  360 (461)
                       ..+..|+.+||+|+..   .|.|.              |++||++++...+..      ...+.|.||.+++|.+ .|+
T Consensus       378 l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~------~p~i~f~gR~~~~l~~-~Ge  433 (581)
T 4eql_A          378 LEDVKLGCTYEPVVTNF---AGLYR--------------MRVGDIVLVTGFYNN------APQFKFVRRENVVLSI-DSD  433 (581)
T ss_dssp             GGGCCTTCEEEEEEECS---SSCCS--------------EECCEEEEEEEEETT------EEEEEEEEETTEEECS-SSC
T ss_pred             HHHcCCCceEEEEEeec---cceee--------------EEcCCEEEEcccCCC------CcEEEEEEecCCEEEe-eee
Confidence             2356889999999865   23332              999999988741111      2579999999999997 899


Q ss_pred             eecchhHHHHHhcCc--------cccEEEEEeC
Q 012526          361 NVEPLELEEAALRSS--------LIRQIVVIGQ  385 (461)
Q Consensus       361 ~v~~~eIE~~l~~~p--------~V~~a~V~~~  385 (461)
                      +++..+||+++.+..        .|.+..++..
T Consensus       434 kl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~  466 (581)
T 4eql_A          434 KTNEEDLFKAVSQAKLVLESSGLDLKDFTSYAD  466 (581)
T ss_dssp             CEEHHHHHHHHHHC--------------CEEEE
T ss_pred             ECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecC
Confidence            999999999999643        2556655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	461
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	8e-43
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-34
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-05
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	8e-33
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-04
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	5e-24
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-09
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	5e-21
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	3e-20
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-19

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  157 bits (399), Expect = 8e-43
 Identities = 82/463 (17%), Positives = 141/463 (30%), Gaps = 119/463 (25%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL-HQIRSLYDIVPAENGDKFLS 71
           A   ++ E + ++D    +YTSG+TG PKGV+ T    L +   +   +     GD +  
Sbjct: 240 ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 299

Query: 72  MLPPWHVYERACGYF--IFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQ 129
                 V   +   +  +      LM+  V N                      +   + 
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTP----------------ARMCQVVD 343

Query: 130 KQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICA 189
           K                 +++  YTA                P+ + AL+      I   
Sbjct: 344 KH----------------QVNILYTA----------------PTAIRALMAEGDKAIEGT 371

Query: 190 ILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIG---VKVQVGYGLT 245
               L +L                    S G  +     + +++ IG     V   +  T
Sbjct: 372 DRSSLRIL-------------------GSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 412

Query: 246 ESSPVIAARRPTCNVL--GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ--VMQ 301
           E+   +    P    L  GS   P    +  +VD E +      ++G + +  S     +
Sbjct: 413 ETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQ-EGATEGNLVITDSWPGQAR 471

Query: 302 GYFKNPSATKQALDE--DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 359
             F +    +Q           +GD                 G   + GR  D + +S G
Sbjct: 472 TLFGDHERFEQTYFSTFKNMYFSGDGARRDED----------GYYWITGRVDDVLNVS-G 520

Query: 360 ENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELS 419
             +   E+E A +    I +  V+G             K + + A     +      E S
Sbjct: 521 HRLGTAEIESALVAHPKIAEAAVVGIPH--------AIKGQAIYAY----VTLNHGEEPS 568

Query: 420 KEKTISLLYGELRKWTSKCSFQIGP------IHVVDE-PFTVN 455
            E     LY E+R W      +IGP      +H  D  P T +
Sbjct: 569 PE-----LYAEVRNW---VRKEIGPLATPDVLHWTDSLPKTRS 603

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  133 bits (334), Expect = 2e-34
 Identities = 73/390 (18%), Positives = 139/390 (35%), Gaps = 30/390 (7%)

Query: 43  VMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---V 99
           V+L   NLL  + ++   +        +    P             +  + +   A   +
Sbjct: 115 VLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGM 174

Query: 100 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 159
                     +        LV  +L + +      S     +    +  ++     +   
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 234

Query: 160 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 219
             G        +      +  +    +      P   LA     +     +   +  V G
Sbjct: 235 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVG 294

Query: 220 GGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV-----------LGSVGHPI 268
           G + P  +   +E +GV+V+ GYGLTE+SPV+       ++               G PI
Sbjct: 295 GSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 354

Query: 269 NHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 327
               +++ D E   V     + G V+++G  +  GY+ N  AT+ AL  DG+  TGDI  
Sbjct: 355 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV 414

Query: 328 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG--- 384
                         G + ++ R KD ++ S GE +  ++LE A +    +++  V+    
Sbjct: 415 WDE----------EGYVEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVVAIPH 463

Query: 385 -QDQRRPGAIIVPDKEEVLMAAKRLSIVHA 413
            + Q RP A++VP  E+         ++ A
Sbjct: 464 PKWQERPLAVVVPRGEKPTPEELNEHLLKA 493

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 26  DIATYVYTSGTTGNPKGVMLTHKNLLHQIR--SLYDIVPAENGDKFLSMLPPWHVYERAC 83
                 YT+GTTG PKGV+ +H+ L+      SL D       D  L ++P +HV     
Sbjct: 170 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 229

Query: 84  GYFIFSRGIELMYTAVRNLKDD----LQRYQPHYMISVPLVYETLYSGIQKQIFTSSAAR 139
            Y     G + +    R                +   VP V+  L   ++         R
Sbjct: 230 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 289

Query: 140 RVV 142
           R+V
Sbjct: 290 RLV 292

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  128 bits (322), Expect = 8e-33
 Identities = 64/267 (23%), Positives = 106/267 (39%), Gaps = 21/267 (7%)

Query: 163 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS 222
             L    ++  +L +L D+     +             L+ K   S   + +    G   
Sbjct: 259 VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS--NLHEIASGGAPL 316

Query: 223 LPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN 281
                +   +   +  ++ GYGLTE++  I       +  G+VG  +   E K+VD +T 
Sbjct: 317 SKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG 376

Query: 282 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCG 341
           + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +              
Sbjct: 377 KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH-------- 428

Query: 342 GVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPD 397
               +  R K  I    G  V P ELE   L+   I    V G         P A++V +
Sbjct: 429 --FFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLE 485

Query: 398 KEEVLMAAKRLSIVHADASELSKEKTI 424
             + +   +   IV   AS+++  K +
Sbjct: 486 HGKTMTEKE---IVDYVASQVTTAKKL 509

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 12/154 (7%)

Query: 25  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG 84
             IA  + +SG+TG PKGV L H+    +     D +         ++L     +     
Sbjct: 187 KTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 246

Query: 85  YFIFS------RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA 138
           +          R + +           LQ Y+    + VP ++           +  S  
Sbjct: 247 FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNL 306

Query: 139 RRVVA------RALIRISFAYTAFKRIYEGFCLT 166
             + +      + +            I +G+ LT
Sbjct: 307 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 340

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (256), Expect = 5e-24
 Identities = 44/250 (17%), Positives = 83/250 (33%), Gaps = 27/250 (10%)

Query: 172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF 230
            S    +ID             L LL           ++   +   S G  +   + + +
Sbjct: 322 YSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY 381

Query: 231 YEAIG---VKVQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVL 284
            E IG   + +   Y  TES   +             GS   P    +  ++D  T E L
Sbjct: 382 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 441

Query: 285 -PAGSKGIVKVRGS--QVMQGYFKNPSATKQAL--DEDGWLNTGDIGWIAPHHSRGRSRR 339
             + ++G++ V+ +     +  +KN             G+  TGD               
Sbjct: 442 NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKD-------- 493

Query: 340 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIV 395
             G + + GR  D + +S G  +   E+E A +   ++ +  V+G +     +   A +V
Sbjct: 494 --GYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVV 550

Query: 396 PDKEEVLMAA 405
              +     A
Sbjct: 551 LKNKSSWSTA 560

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (136), Expect = 3e-09
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 9/121 (7%)

Query: 13  AGKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKN-LLHQIRSLYDIVPAENGDKFLS 71
              +Y    + S+D    +YTSG+TG PKGV  +    LL  + ++         D F +
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFT 286

Query: 72  MLPPWHVYER--------ACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 123
                 +             G           Y       D +  ++       P     
Sbjct: 287 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRL 346

Query: 124 L 124
           L
Sbjct: 347 L 347

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 93.2 bits (230), Expect = 5e-21
 Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 17/260 (6%)

Query: 160 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 219
            +G  +   + +P   + L+       + A    L  LA    +      +   +     
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280

Query: 220 GGSLP-MHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 278
           G ++P   ++  ++ +  +    YG TE+   +  R+P      + G       ++I   
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG 340

Query: 279 ETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR 338
               V       ++         GY   P AT + L +DGW  T D+    P        
Sbjct: 341 VDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE------- 392

Query: 339 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AII 394
              G + + GR  D I+   GEN+ P E+E     +  + ++VVIG   +R G    A +
Sbjct: 393 ---GTVRILGRVDDMIISG-GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACV 448

Query: 395 VPDKEEVLMAAKRLSIVHAD 414
           VP   E L A    +   + 
Sbjct: 449 VPRLGETLSADALDTFCRSS 468

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 90.7 bits (224), Expect = 3e-20
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 14/226 (6%)

Query: 181 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQV 240
             + + I      +  L    V       I   +  ++ G +    +   ++   V    
Sbjct: 247 VKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKE-KVTYIN 305

Query: 241 GYGLTESSPVIAARRPTCNVLG---SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 297
            YG TE++        T   +G    +G PI +T+I IVD E  ++   G  G + + G 
Sbjct: 306 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGE 364

Query: 298 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 357
            + +GY+K P  T Q   ++ ++  G+  +     +R       G +   GR  + + + 
Sbjct: 365 GLARGYWKRPELTSQKFVDNPFV-PGEKLYKTGDQAR---WLSDGNIEYLGRIDNQVKIR 420

Query: 358 TGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPGAIIVPDKE 399
            G  VE  E+E   L+   I +  V      Q+Q    A  V +K 
Sbjct: 421 -GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH 465

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 86.6 bits (213), Expect = 8e-19
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 17/241 (7%)

Query: 172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY 231
           P     LI+     I   +     +        +      +    V G            
Sbjct: 261 PDDAFPLIEREKVTITALVPPLAMVW-MDAASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319

Query: 232 EAIGVKVQVGYGLTESSPVIAARRPTCNV-LGSVGHPINHTEIKIVDAETNEVLPAGSKG 290
              G  +Q  +G+ E             + + + G P++  +   V  + +  +  G  G
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETG 379

Query: 291 IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRA 350
            +  RG   ++GY+K       +  EDG+  TGDI  +             G +V+EGRA
Sbjct: 380 HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD----------GYIVVEGRA 429

Query: 351 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK 406
           KD I    GE V   E+E   L    +    ++    +    R    I+P  E    A  
Sbjct: 430 KDQINRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAEL 488

Query: 407 R 407
           +
Sbjct: 489 K 489

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	461
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=6.7e-51  Score=432.18  Aligned_cols=344  Identities=17%  Similarity=0.174  Sum_probs=282.8

Q ss_pred             CcccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHH-HHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccC
Q 012526           14 GKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ-IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRG   91 (461)
Q Consensus        14 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~-~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G   91 (461)
                      .+...+...+++|+++|+|||||||.||||++||++++.. ...+...+++.++|++++.+|++|++++.. .+.++..|
T Consensus       241 ~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G  320 (643)
T d1pg4a_         241 SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG  320 (643)
T ss_dssp             CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTT
T ss_pred             CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhC
Confidence            3445556678899999999999999999999999997654 444566788999999999999999999875 45669999


Q ss_pred             eEEEEc-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012526           92 IELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFC  164 (461)
Q Consensus        92 ~~~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (461)
                      +++++.       ++..+++.++++++|++.++|+++..|.+......                                
T Consensus       321 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~--------------------------------  368 (643)
T d1pg4a_         321 ATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI--------------------------------  368 (643)
T ss_dssp             CEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT--------------------------------
T ss_pred             CEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc--------------------------------
Confidence            999873       46789999999999999999999988865321110                                


Q ss_pred             cccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh---CCeeee
Q 012526          165 LTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---GVKVQV  240 (461)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~---~~~v~~  240 (461)
                                                               ....+.++|.+++||+++++++ +.+.+.+   ++.+++
T Consensus       369 -----------------------------------------~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~  407 (643)
T d1pg4a_         369 -----------------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD  407 (643)
T ss_dssp             -----------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE
T ss_pred             -----------------------------------------cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEE
Confidence                                                     0123556799999999999887 4555666   467999


Q ss_pred             ecccCCCccceeccCCC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec--CCccccccCCchhhcccc--
Q 012526          241 GYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQAL--  314 (461)
Q Consensus       241 ~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~f--  314 (461)
                      .||+||++..+....+.  ..+.+++|+|++|++++++|+ .+++++.|+.|||+|++  |+++.||+++++.+.+.+  
T Consensus       408 ~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~-~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~  486 (643)
T d1pg4a_         408 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS  486 (643)
T ss_dssp             EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS
T ss_pred             eechhhccceEEecCCCccCCCCCccccccCCCEEEEECC-CCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcc
Confidence            99999998876654433  345789999999999999994 57889999999999999  578999999998877665  


Q ss_pred             CCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----Cee
Q 012526          315 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRP  390 (461)
Q Consensus       315 ~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~  390 (461)
                      ..+|||+|||+|++++          ||.++++||+||+|++ +|++|+|.|||++|.+||+|.+|+|++.++    +.+
T Consensus       487 ~~~g~~~TGDl~~~d~----------dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~  555 (643)
T d1pg4a_         487 TFKNMYFSGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI  555 (643)
T ss_dssp             SSTTSEEEEEEEEECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEE
T ss_pred             cCCCeEEcCCEEEECC----------CceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEE
Confidence            3489999999999999          8999999999999997 899999999999999999999999999854    357


Q ss_pred             EEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          391 GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       391 ~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      +|+|+++++.             .......++|+++++++|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       556 ~a~Vv~~~~~-------------~~~~~~~~~i~~~~~~~L~~~~-----vP~~i~~v~~lP~T~sGKi~  607 (643)
T d1pg4a_         556 YAYVTLNHGE-------------EPSPELYAEVRNWVRKEIGPLA-----TPDVLHWTDSLPKTRSGKIM  607 (643)
T ss_dssp             EEEEEECTTC-------------CCCHHHHHHHHHHHHHHTCGGG-----CCSEEEECSCCCBCTTSCBC
T ss_pred             EEEEEECCCC-------------CCCHHHHHHHHHHHHhhCCccc-----CccEEEEECCCCCCCCcCcc
Confidence            7899887530             0011123478889999998887     66789999999999999973

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.8e-48  Score=404.67  Aligned_cols=337  Identities=25%  Similarity=0.339  Sum_probs=269.8

Q ss_pred             CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh---cCCCCCcEEEEECChhhhHHHhhhhhhhccCeEE
Q 012526           18 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIEL   94 (461)
Q Consensus        18 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~   94 (461)
                      +.....++++++++|||||||.||+|+++|++++.........   ..+.+++++++++|++|..+....+..+..++..
T Consensus       180 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  259 (541)
T d1lcia_         180 PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRV  259 (541)
T ss_dssp             CCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEE
T ss_pred             ccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccccccccc
Confidence            3444567899999999999999999999999998776665543   3567899999999999999998888887777777


Q ss_pred             EEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526           95 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  171 (461)
Q Consensus        95 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (461)
                      +..   +.......+..++++.+..+|..+..+.......                                        
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~----------------------------------------  299 (541)
T d1lcia_         260 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID----------------------------------------  299 (541)
T ss_dssp             EECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG----------------------------------------
T ss_pred             ccccccccchhHHHHhhhhccccccCcccccccccccccc----------------------------------------
Confidence            763   5677889999999999999999988776532111                                        


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC-CeeeeecccCCCcc
Q 012526          172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSP  249 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~-~~v~~~YG~tE~~~  249 (461)
                                                         ...+..++.+++||+++++.. ..+.+.++ ..++++||+||++.
T Consensus       300 -----------------------------------~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~  344 (541)
T d1lcia_         300 -----------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS  344 (541)
T ss_dssp             -----------------------------------GSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSS
T ss_pred             -----------------------------------ccccccceEEEecccccccccccccccccCCceeeecCCccccCc
Confidence                                               123345699999999998876 55666675 46899999999999


Q ss_pred             ceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526          250 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  329 (461)
Q Consensus       250 ~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~  329 (461)
                      .++.........+++|+|+++++++|+|+|++++++.|+.|||+|+|++++.||+++++.+...+..++||+|||+|+++
T Consensus       345 ~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~  424 (541)
T d1lcia_         345 AILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD  424 (541)
T ss_dssp             CSEECCCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred             eEEecCcccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEc
Confidence            88888777788899999999999999999999999999999999999999999999999999888889999999999999


Q ss_pred             cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHHH
Q 012526          330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAA  405 (461)
Q Consensus       330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~~  405 (461)
                      +          +|.+++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++    +.+.++|+++++      
T Consensus       425 ~----------~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~------  487 (541)
T d1lcia_         425 E----------DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG------  487 (541)
T ss_dssp             T----------TCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT------
T ss_pred             C----------CeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCC------
Confidence            8          8999999999999997 899999999999999999999999998654    356788887643      


Q ss_pred             HHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          406 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                ...+.++++++++++|..+.    ..++.|.++++.|.+.+||+.
T Consensus       488 ----------~~~~~~~l~~~~~~~l~~~~----~~p~~i~~v~~lP~t~~GKi~  528 (541)
T d1lcia_         488 ----------KTMTEKEIVDYVASQVTTAK----KLRGGVVFVDEVPKGLTGKLD  528 (541)
T ss_dssp             ----------CCCCHHHHHHHHHHHSCGGG----SCTTEEEEESSCCC-----CC
T ss_pred             ----------CCCCHHHHHHHHHHhCCccc----cCCcEEEEeCCCCcCCCcCcc
Confidence                      45677899999999987765    135679999999999999974

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-48  Score=414.35  Aligned_cols=350  Identities=18%  Similarity=0.217  Sum_probs=277.3

Q ss_pred             ccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHH-HhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeE
Q 012526           16 HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIE   93 (461)
Q Consensus        16 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~   93 (461)
                      ........++|+++|+|||||||.||||+++|++++.+... ....+.+.++|++++.+|++|++++.. .+.++..|++
T Consensus       230 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~  309 (640)
T d1ry2a_         230 YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCA  309 (640)
T ss_dssp             CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSE
T ss_pred             ccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCE
Confidence            34445567789999999999999999999999998776544 445678899999999999999999765 5567899988


Q ss_pred             EEEc-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccc
Q 012526           94 LMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT  166 (461)
Q Consensus        94 ~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (461)
                      +++.       ++..+++.|+++++|.+.++|+++..|.+......                                  
T Consensus       310 ~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------------  355 (640)
T d1ry2a_         310 TLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI----------------------------------  355 (640)
T ss_dssp             EEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS----------------------------------
T ss_pred             EEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccccc----------------------------------
Confidence            8763       46789999999999999999999987754211100                                  


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC---Ceeeeec
Q 012526          167 RNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGY  242 (461)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~---~~v~~~Y  242 (461)
                                                             ....+.++|.+++||+++++++ +.+.+.++   ..+++.|
T Consensus       356 ---------------------------------------~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~y  396 (640)
T d1ry2a_         356 ---------------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTY  396 (640)
T ss_dssp             ---------------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECB
T ss_pred             ---------------------------------------ccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeee
Confidence                                                   0124566799999999999987 55556664   5699999


Q ss_pred             ccCCCccceeccCCC---CCCccccccCCCCeEEEEEeCCCCCcC-CCCCceEEEEec--CCccccccCCchhhcccc--
Q 012526          243 GLTESSPVIAARRPT---CNVLGSVGHPINHTEIKIVDAETNEVL-PAGSKGIVKVRG--SQVMQGYFKNPSATKQAL--  314 (461)
Q Consensus       243 G~tE~~~~~~~~~~~---~~~~~~~G~~~~~~~i~i~d~~~~~~~-~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~f--  314 (461)
                      |+||++.........   ...++++|+|+++++++|+|+++++.+ +.++.|||++++  |+++.||+++++.+.+.|  
T Consensus       397 g~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~  476 (640)
T d1ry2a_         397 WQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN  476 (640)
T ss_dssp             CCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS
T ss_pred             cccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhcc
Confidence            999998876654432   245689999999999999998777655 455679999998  689999999999998877  


Q ss_pred             CCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----ee
Q 012526          315 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RP  390 (461)
Q Consensus       315 ~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~  390 (461)
                      +.+|||+|||+|++++          ||+++|+||.||+|+. +|++|+|.|||++|.+||+|.+|+|+|.+++    .+
T Consensus       477 ~~~gw~~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~  545 (640)
T d1ry2a_         477 PYPGYYFTGDGAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV  545 (640)
T ss_dssp             SSTTSEEEEEEEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCC
T ss_pred             CCCCeEEcCCceeECC----------CCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEE
Confidence            3469999999999998          8999999999999996 8999999999999999999999999998654    57


Q ss_pred             EEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          391 GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       391 ~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      .|+||+++......+.      .+....-.++++++++++|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       546 ~a~Vv~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~T~sGKi~  604 (640)
T d1ry2a_         546 AAFVVLKNKSSWSTAT------DDELQDIKKHLVFTVRKDIGPFA-----APKLIILVDDLPKTRSGKIM  604 (640)
T ss_dssp             EEEEEEC------------------CCSHHHHHHHHHHHHTCTTT-----SCSEEEECSCCCBCTTSCBC
T ss_pred             EEEEEEcCCCCccccc------hHHHHHHHHHHHHHHHhhCCCCC-----CceEEEEeCCCCCCCCcCcc
Confidence            8999987642211100      00001123567788888888887     66789999999999999974

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-47  Score=398.89  Aligned_cols=336  Identities=26%  Similarity=0.388  Sum_probs=246.6

Q ss_pred             cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHH--hhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEE
Q 012526           17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL--YDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIEL   94 (461)
Q Consensus        17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~   94 (461)
                      .+.....++++++++|||||||.||+|.++|.+++.+....  ...+....+|++++.+|++|.+++...+..+..|+..
T Consensus       161 ~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~  240 (534)
T d1v25a_         161 ADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQ  240 (534)
T ss_dssp             CCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEE
T ss_pred             ccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeeccee
Confidence            34555678899999999999999999999999998665443  3445567899999999999999999988888787777


Q ss_pred             EEc----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           95 MYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        95 ~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                      ++.    ++..+...+.++++|.+.++|.++..+........                                      
T Consensus       241 v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~--------------------------------------  282 (534)
T d1v25a_         241 VLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG--------------------------------------  282 (534)
T ss_dssp             EECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT--------------------------------------
T ss_pred             eeccccccccccchhhhhccccccccCchhhhhhhhhhcccc--------------------------------------
Confidence            763    57789999999999999999999988876533321                                      


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccc
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV  250 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~  250 (461)
                                                           ..+.++|.+++||+++++...+.++.++.++++.||+||++..
T Consensus       283 -------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~te~~~~  325 (534)
T d1v25a_         283 -------------------------------------HRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPV  325 (534)
T ss_dssp             -------------------------------------CCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSE
T ss_pred             -------------------------------------ccccceeEEEEecCCCCHHHHHHHHHhCCeeeeeccccccccc
Confidence                                                 2445569999999999999888888889999999999999998


Q ss_pred             eeccCCCC-----------CCccccccCCCCeEEEEEeCCCCCcCCC--CCceEEEEecCCccccccCCchhhccccCCC
Q 012526          251 IAARRPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDED  317 (461)
Q Consensus       251 ~~~~~~~~-----------~~~~~~G~~~~~~~i~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~  317 (461)
                      +.......           ...+++|+|++|++++|+|++ ++.++.  |+.|||+|+|++++.||+++++.+...|..+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~-~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~d  404 (534)
T d1v25a_         326 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD  404 (534)
T ss_dssp             EEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTT-SCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTT
T ss_pred             eeecccCccccccCccccccccccceeccCCcEEEEECCC-CCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccC
Confidence            77654322           123689999999999999954 555554  6799999999999999999999999999899


Q ss_pred             CcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEE
Q 012526          318 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAI  393 (461)
Q Consensus       318 ~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~  393 (461)
                      |||+|||+|++++          ||.+++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    .+.|+
T Consensus       405 g~~~TGDlg~~~~----------~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~  473 (534)
T d1v25a_         405 GFFRTGDIAVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV  473 (534)
T ss_dssp             SCEEEEEEEEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEEC
T ss_pred             CCCccCceeEECC----------CccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEE
Confidence            9999999999998          8999999999999997 8999999999999999999999999987544    46677


Q ss_pred             EEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          394 IVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       394 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                      |+++.+                ....++.++..+++.|+.|+     .|+.|.++++.|.+.|||+.
T Consensus       474 vv~~~~----------------~~~~~~~~~~~~~~~l~~~~-----~P~~i~~~~~lP~t~~GKi~  519 (534)
T d1v25a_         474 VVPRGE----------------KPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGKFL  519 (534)
T ss_dssp             C-----------------------------------CCCTTT-----SCSBC--------------C
T ss_pred             EEeCCC----------------CCCHHHHHHHHHHhcCCcCC-----CccEEEEECCCCCCCCcccc
Confidence            776543                12233334444666677765     67789999999999999974

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=8.2e-44  Score=367.40  Aligned_cols=325  Identities=22%  Similarity=0.236  Sum_probs=269.6

Q ss_pred             CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcc
Q 012526           19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA   98 (461)
Q Consensus        19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~   98 (461)
                      ..+..++|+++++|||||||.||+|.+||+++..........++..++|++++..|++|..++...+..+..|+++++..
T Consensus       160 ~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~  239 (514)
T d1amua_         160 HVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIIL  239 (514)
T ss_dssp             CCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECC
T ss_pred             CCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccccccccc
Confidence            34457889999999999999999999999999999999999999999999999999999999998888888888888743


Q ss_pred             ------hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526           99 ------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  172 (461)
Q Consensus        99 ------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (461)
                            ....++.+..+.++.+...|.......                                               
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------  272 (514)
T d1amua_         240 KDTINDFVKFEQYINQKEITVITLPPTYVVHLD-----------------------------------------------  272 (514)
T ss_dssp             HHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC-----------------------------------------------
T ss_pred             cccccchhhhhhhhhhhhcccccceeeeccccc-----------------------------------------------
Confidence                  355678888899999888876532110                                               


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCcccee
Q 012526          173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA  252 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~  252 (461)
                                                        ...+..++.+++||+++++++...... +..+++.||+||++..++
T Consensus       273 ----------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~  317 (514)
T d1amua_         273 ----------------------------------PERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICAT  317 (514)
T ss_dssp             ----------------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSE
T ss_pred             ----------------------------------ccccccccEEEEecccCCHHHhhhhcc-ceeEEEeeccccCceeee
Confidence                                              123455688999999998876433322 689999999999998776


Q ss_pred             ccCCCC---CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhcccc------CCCCcccCC
Q 012526          253 ARRPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL------DEDGWLNTG  323 (461)
Q Consensus       253 ~~~~~~---~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f------~~~~~~~TG  323 (461)
                      ......   ...++.+.+.++..+.+.| +++++++.|+.|||+|+||.++.||++++..+...|      +.++||+||
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TG  396 (514)
T d1amua_         318 TWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG  396 (514)
T ss_dssp             EEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEE
T ss_pred             eccccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEEC
Confidence            554333   3345678899999999999 678899999999999999999999999999888776      347899999


Q ss_pred             ceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChH
Q 012526          324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  399 (461)
Q Consensus       324 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~  399 (461)
                      |+|++++          +|++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    .+.|+|++++ 
T Consensus       397 D~g~~d~----------~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~-  464 (514)
T d1amua_         397 DQARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK-  464 (514)
T ss_dssp             EEEEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS-
T ss_pred             CEEEECC----------CCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCC-
Confidence            9999999          8999999999999997 8999999999999999999999999997543    5677887753 


Q ss_pred             HHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          400 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                       ..+.++++++++++|+.|+     +|+.|.++++.|.+.+||+.
T Consensus       465 -----------------~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~lP~t~~GKi~  503 (514)
T d1amua_         465 -----------------HIPLEQLRQFSSEELPTYM-----IPSYFIQLDKMPLTSNGKID  503 (514)
T ss_dssp             -----------------CCCHHHHHHHHHHHSCGGG-----SCSEEEECSSCCBCTTSSBC
T ss_pred             -----------------CCCHHHHHHHHHhhCCccc-----CceEEEEeCCCCCCCCcChh
Confidence                             3567899999999999887     66789999999999999973

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.6e-43  Score=366.59  Aligned_cols=337  Identities=19%  Similarity=0.280  Sum_probs=281.2

Q ss_pred             ccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhh--hhccCeE
Q 012526           16 HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF--IFSRGIE   93 (461)
Q Consensus        16 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~--~l~~G~~   93 (461)
                      ........++|+++++|||||||.||+|++||+++..++......+++.++|++++..|++|.+++...+.  .+..|.+
T Consensus       173 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~  252 (536)
T d1mdba_         173 PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGR  252 (536)
T ss_dssp             CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCE
T ss_pred             CcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccccccccc
Confidence            34455678899999999999999999999999999999999999999999999999999999999765333  3455677


Q ss_pred             EEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526           94 LMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  170 (461)
Q Consensus        94 ~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                      ++..   ++..++..+++++++.+..+|..+..+.......                                       
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  293 (536)
T d1mdba_         253 VVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR---------------------------------------  293 (536)
T ss_dssp             EEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC---------------------------------------
T ss_pred             ccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccc---------------------------------------
Confidence            7663   5788999999999999999999887776543221                                       


Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcc
Q 012526          171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSP  249 (461)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~  249 (461)
                                                          ...+..++.+++||+++++.. ..+.+.++...+..|+.+|.+.
T Consensus       294 ------------------------------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (536)
T d1mdba_         294 ------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV  337 (536)
T ss_dssp             ------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCE
T ss_pred             ------------------------------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccc
Confidence                                                123344589999999998876 5556667999999999988766


Q ss_pred             ceeccCC-CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEee
Q 012526          250 VIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  328 (461)
Q Consensus       250 ~~~~~~~-~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~  328 (461)
                      ....... .....+++|.|.++....+++.++++.++.++.|||+++|+.++.||++++..+...+.+++||+|||++++
T Consensus       338 ~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~  417 (536)
T d1mdba_         338 NYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRL  417 (536)
T ss_dssp             EECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEE
T ss_pred             cccccccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCccccc
Confidence            5544332 223457889998776666666688999999999999999999999999999999999988999999999999


Q ss_pred             ccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHH
Q 012526          329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  404 (461)
Q Consensus       329 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~  404 (461)
                      ++          ||.+++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    .+.|+|++++      
T Consensus       418 ~~----------dG~l~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~------  480 (536)
T d1mdba_         418 TR----------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD------  480 (536)
T ss_dssp             CT----------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS------
T ss_pred             cC----------CCceecCCCcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC------
Confidence            99          8999999999999997 8999999999999999999999999987543    4678888763      


Q ss_pred             HHHcCCCcCCccccCcHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          405 AKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                 ...+.++++++++++ |+.|+     .|+.|.++++.|.+.+||+.
T Consensus       481 -----------~~~~~~~l~~~l~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~  521 (536)
T d1mdba_         481 -----------EAPKAAELKAFLRERGLAAYK-----IPDRVEFVESFPQTGVGKVS  521 (536)
T ss_dssp             -----------SCCCHHHHHHHHHHTTCCGGG-----SCSEEEECSSCCBCTTSCBC
T ss_pred             -----------CCCCHHHHHHHHHhcCCCcCc-----CccEEEEECCCCcCCCcCcc
Confidence                       245678899999875 77876     66789999999999999974

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=3.8e-39  Score=329.65  Aligned_cols=340  Identities=21%  Similarity=0.277  Sum_probs=271.7

Q ss_pred             CcccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcC--CCCCcEEEEECChhhhHHHhhh-hhhhcc
Q 012526           14 GKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERACG-YFIFSR   90 (461)
Q Consensus        14 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~~~~~~-~~~l~~   90 (461)
                      .+........++++++++|||||||.||+|.++|+++...+......+.  ....+++++.+|++|..+.... +.+...
T Consensus       142 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  221 (503)
T d3cw9a1         142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALAL  221 (503)
T ss_dssp             SCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHT
T ss_pred             CCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccc
Confidence            3445556678899999999999999999999999999988877766544  4556899999999888887654 444556


Q ss_pred             CeEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccccccc
Q 012526           91 GIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR  167 (461)
Q Consensus        91 G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      ++.++..   ++..+...+..++++.+..+|..+..+.........                                  
T Consensus       222 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  267 (503)
T d3cw9a1         222 DGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS----------------------------------  267 (503)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT----------------------------------
T ss_pred             ccccccccccChHHhhhhhhhceeeccccccccccccccccccccc----------------------------------
Confidence            6666653   578899999999999999999998777654332210                                  


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCC
Q 012526          168 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTE  246 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE  246 (461)
                                                             ...+..+|.+++||++++++. ..+.+.++..+.+.||++|
T Consensus       268 ---------------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e  308 (503)
T d3cw9a1         268 ---------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE  308 (503)
T ss_dssp             ---------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETT
T ss_pred             ---------------------------------------cccccceEEEEeccccccccccccccccccccccccccccc
Confidence                                                   022345699999999998886 5555566889999999999


Q ss_pred             CccceeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecC-CccccccCCchhhccccCCCCcccCCce
Q 012526          247 SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDI  325 (461)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~-~~~~gy~~~~~~~~~~f~~~~~~~TGDl  325 (461)
                      ++..+.............+.+.+.....+.+ +.++.++.|+.|++.+.+. ....+|++++..+.+.| .+|||+|||+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~  386 (503)
T d3cw9a1         309 AMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDV  386 (503)
T ss_dssp             TEEEEEEESCSSSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEE
T ss_pred             cceeeeeccccccccccccccccceeeeeec-ccCcccCCCccccccccccccccccccCChhhhHHHh-cCCceecccc
Confidence            9888777665555545555555544444444 7788899999998877764 66777888999998888 5899999999


Q ss_pred             EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHH
Q 012526          326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  401 (461)
Q Consensus       326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~  401 (461)
                      |++++          ||.++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    .+.|+|+++..  
T Consensus       387 g~~~~----------dG~l~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~--  453 (503)
T d3cw9a1         387 AVWTP----------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG--  453 (503)
T ss_dssp             EEECT----------TSCEEEEEESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--
T ss_pred             ccccc----------CCeEEeCCCcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCC--
Confidence            99999          8999999999999997 8999999999999999999999999987543    57788888643  


Q ss_pred             HHHHHHcCCCcCCccccCcHHHHHHHH-HHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526          402 LMAAKRLSIVHADASELSKEKTISLLY-GELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  460 (461)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  460 (461)
                                    ...+.++++++++ ++|+.|+     +|+.|.++++.|.+.+||+.
T Consensus       454 --------------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~~P~t~~GKi~  494 (503)
T d3cw9a1         454 --------------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKVL  494 (503)
T ss_dssp             --------------CCCCHHHHHHHHHHSSSCGGG-----SCSEEEECSCCCBCTTSCBC
T ss_pred             --------------CCCCHHHHHHHHHhcCCCCCC-----CccEEEEECCCCcCCCcCcc
Confidence                          5677889999996 4688886     66789999999999999973